LOCUS       DASFRC010000001        56413 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.001, whole genome shotgun sequence.
ACCESSION   DASFRC010000001 DASFRC010000000
VERSION     DASFRC010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 56413)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 56413)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..56413
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.001"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..141
                     /gene="deoA"
                     /locus_tag="U1087_000001"
     CDS             <1..141
                     /gene="deoA"
                     /locus_tag="U1087_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940851.1"
                     /note="Catalyzes the reversible phosphorolysis of
                     thymidine, deoxyuridine and their analogues to their
                     respective bases and 2-deoxyribose 1-phosphate; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine-nucleoside phosphorylase"
                     /protein_id="HEM4754536.1"
                     /translation="AVSKGEQIATIYANENISENMLTNFRKNVKIDKESVKTKEIIEI
                     IS"
     gene            157..819
                     /gene="deoC"
                     /locus_tag="U1087_000002"
     CDS             157..819
                     /gene="deoC"
                     /locus_tag="U1087_000002"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011836882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HEM4754537.1"
                     /translation="MKLNKYIDHTILKPETTQEQVEKILAEAKEYDFASVCVNPTWVA
                     LAAESLKDSDVKVCTVIGFPLGANTPAVKAFETKDAISNGADEIDMVINIGALKTGNY
                     DLVLEDIKAVVAASGDKLVKVIIEACLLTDDEKVKACQLSQEAGADYVKTSTGFSTGG
                     ATVADVALMRKTVGPDMGVKASGGARSYEDAIAFIEAGASRIGASSGVAIMNGAQADG
                     DY"
     gene            806..1195
                     /locus_tag="U1087_000003"
     CDS             806..1195
                     /locus_tag="U1087_000003"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HEM4754538.1"
                     /translation="METIDLIELAVKNSQKAYVPYSKFPVSAVLVAKTGEIFTGVNIE
                     NASFGLTNCAERTAIFKAISEGVKDFSEIIIYGETEKPISPCGACRQVMAEFFDKDLK
                     VTLVAKDKSTVEMTVGELLPYSFTDLT"
     gene            1276..2343
                     /locus_tag="U1087_000004"
     CDS             1276..2343
                     /locus_tag="U1087_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMP family protein"
                     /protein_id="HEM4754539.1"
                     /translation="MNKKLVGLGLAAVAAVSLAACGNRASKSSSSEASSSADTSVKAA
                     IVTDIGGVDDRSFNQSAWEGLQEWGNAAGLSKGNGYDYFQSANESEYITNLDSAVAGG
                     YNLVFGIGFALESAIAEVAPNNPDTHYVIVDSVVPDQDNVVSVGFADHEASYLAGVAA
                     AKSTKTNHVGFIGGMEGVIIDRFEAGFVAGAKSVNKDIKITVDYAGSFGDAAKGQTLA
                     AAQYAAGADVIFHASGGTGNGVFAAAKAENETRNEADKVWVIGVDRDQSAEGEYTSKD
                     GKSSNFVLASTLKQVGTSVKDIATKAVAGEFPGGQVLQFSLKDKGVELAETNLSEDAS
                     KAVADAKQAILDGKVEVPEKP"
     gene            2538..4073
                     /locus_tag="U1087_000005"
     CDS             2538..4073
                     /locus_tag="U1087_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4754540.1"
                     /translation="MTKDYVIEMRNITKIFGEFVANDHINLNVRRGEIHALLGENGAG
                     KSTLMNMLAGLLEPTSGEIVINGQSVKIDSPSKAAQLGIGMVHQHFMLVDAFTVAENI
                     ILGSETTKGGVIDLKKAIAEIKELSAKYGLEVDPTAKVADISVGAQQRVEILKTLYRG
                     ADLLIFDEPTAVLTPAEIAELLKIMKALVEEGKSIILITHKLDEIRAVADSVTVIRRG
                     KSIETVAVEGATNQDLAEWMVGRSVSFKTEKVEASPKEVILSIKDLVVNENRGIPAVK
                     GLSLDVRAGEVVGIAGIDGNGQSELIQAITGLRKVKSGSITIKGEEVVGKTPRKITEM
                     QVSHVPEDRHRDGLVLPMTVAENFALQTYYKEPISKNGILNYNIINEKARALMEEFDV
                     RGASELVPIKALSGGNQQKAIIAREIDRNPDLFIVSQPTRGLDVGAIEYIRKRLIAER
                     DKGKAVLVVSFELDEILDVSDRIAVIHDGVIHGIVEPAKTNKQELGVLMAGGHIEKGE
                     EHA"
     gene            4066..5127
                     /locus_tag="U1087_000006"
     CDS             4066..5127
                     /locus_tag="U1087_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM4754541.1"
                     /translation="MLNKYKNLALPLMAVVSGILLGAIVMLVFGYDPIWGYEELFYSA
                     FGNIKSIGEIFRAMAPLVFTALGFAVASRAGFFNVGLSGQAYVGWVFAGWFALANPDL
                     PRPVLILGTVLIAMLAGGIAGAIPGILRAYLGTSEVVVTIMMNYILLYSCNYIIRDVF
                     ADSLMKNTDSTVNVSANASYQTEWLRALTDNSRMNIGIFFAIIAVFVIWFLLTKTTLG
                     FEIRSVGLNPTASDYAGMSAKRTIILSMIISGALAGLGGAIQGLGTFQNVYIQSGNLD
                     IGFNGMSVALLASNSPLGIPLAAFLFGVLSVGAPGMVRAQIPPELINVVTASIIFFIG
                     VKFIFEQLLKSRNKAKGAK"
     gene            5129..6082
                     /locus_tag="U1087_000007"
     CDS             5129..6082
                     /locus_tag="U1087_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000060306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM4754542.1"
                     /translation="MNVSILALLISQMLIYSAPLIFTSLGGVFSERGGIVNVGLEGIM
                     VIGAFAGVVFNIEFAGTFGNATPLLAVIVGGLAGVVFAAIHAMATINFRADHVVSGTV
                     LNLLAPALGVFLVKVIYNKGQTDSITESFGKFSFPVLADIPIIGEIFFKNTSLMGYVA
                     IATAFLAWFILYKTKFGLRLRSVGEHPQAADTLGINVYAMRYAGVLIAGFLGGVGGAV
                     SAQSVNINFSATTIVGSGFIALAAVIFGKWNPIGAMLASLFFGLSQSLAVVGGQLPGL
                     KDIPTVYLQIAPYLITVIALSAFFGKAVAPKADGINYIKSK"
     gene            complement(6261..7244)
                     /locus_tag="U1087_000008"
     CDS             complement(6261..7244)
                     /locus_tag="U1087_000008"
                     /EC_number="1.1.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003050541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HEM4754543.1"
                     /translation="MTATKQHKKVILVGDGAVGSAYAYALVNQGIGQELGIIDINKDR
                     TQGDAEDLSHALAFTFPKKIYSAEYSDAHDADLVVLTAGLPQKPGETRLELVEKNLRI
                     NQQIVTEIVNSGFNGIFLVAANPVDVLTYSTWKFSGFPKERVIGSGTSLDSARFRQAL
                     AEKIGIDARSVHAYIMGEHGDSEFAVWSHANVAGVKLYDWLQDNRDIDEQGLVDLFVS
                     VRDAAYSIINKKGATYYGIGVALARITKAIFDDENAVLPLSVYQAGQYEGVEDVFIGQ
                     PAIIGAHGIVRPVNIPLSEAELQKMQASAKQLKDIIDDAFANPEIAAGVKN"
     gene            7433..9877
                     /gene="gyrA"
                     /locus_tag="U1087_000009"
     CDS             7433..9877
                     /gene="gyrA"
                     /locus_tag="U1087_000009"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003244540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HEM4754544.1"
                     /translation="MQDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHR
                     RILYGMNELGITPDKPHKKSARITGDVMGKYHPHGDGAIYEAMVRMAQWWSYRHMLVD
                     GHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPAR
                     FPNLLVNGTTGIAVGMATNIPPHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTG
                     ALVMGKSGIHRAYETGKGSIVLRSRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVK
                     LVQEKRIEGITAVRDESNREGVRFVIEVRRDASANVILNNLFKQTQLQTNFSFNMLAI
                     QNGVPKILSVRQILESYIEHQKEVVTRRTRFDKEKAEARAHILEGLLIALDHIDEVIR
                     IIRNSETDALAQAELMEKFDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIAD
                     LADILAKPERVVQIIKDELEEVKRKYADPRRTELMVGEVLSLEDEDLIEETDVLITLS
                     NQGYIKRLAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRL
                     KGYEIPEYGRTAKGLPVVNLLKLEENEAIQTIINVTKDQEADSYLFFATRQGVVKRTS
                     VSEFANIRQSGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTETDVRNMGRT
                     ATGVRGINLREGDQLVGATMISDDQEVLVLTEKGFGKRTPASEYPTKGRGGKGIKTLK
                     VAEKNGSLAGLTTVSGDEDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLNDEAKI
                     MTFALVDAAEIKEEKE"
     gene            9884..10633
                     /locus_tag="U1087_000010"
     CDS             9884..10633
                     /locus_tag="U1087_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class A sortase"
                     /protein_id="HEM4754545.1"
                     /translation="MSKRENKKKRKGSFWRNLLTVVLILISLALIFNTSIRNFIIGWN
                     TNKYQISNVTTEDIEKNKQAETTFDFDQVQSISTEAILAAQWDAQRLPVIGGIAVPEL
                     GINLPIFKGVFNTSLMYGAGTMKENQEMGKGNYALASHHIFGVTGAADVLFSPLDRAK
                     NGMKIYITDKTNVYTYVIDSVEIVSPESVYVIDDVEGRTEVTLVTCTDYNATQRIIVK
                     GVLESTTPYNETAKDILDSFNKSYNQYDYGQ"
     gene            10746..11426
                     /gene="radC"
                     /locus_tag="U1087_000011"
     CDS             10746..11426
                     /gene="radC"
                     /locus_tag="U1087_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HEM4754546.1"
                     /translation="MYQIEFKEEAILPRERLVEVGAERLSNQELLAIFIRTGTKKEPV
                     SILSNKLLNRLESLAALRELSIEELQSLTGIGRVKAIEIKAMIELGKRINQSELLLNE
                     RILGSEKLGRKMIHEIGHKKQEHLVALYLNTQNQIISQKTIFIGSVNRSIAEPREILH
                     YAVKCMATSIIIVHNHPSGSVQPSRNDLLFTENLKESCEKLGLVLLDHLIVGNKDYYS
                     FREESELF"
     gene            complement(11423..12115)
                     /locus_tag="U1087_000012"
     CDS             complement(11423..12115)
                     /locus_tag="U1087_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEM4754547.1"
                     /translation="MKKPVIGISGNEYKTGDHTEPLLSYTQTCLVQAIEDAGGLPLIL
                     PATEPDLAKYYIHLIDKLILTGGQNVQPSYYHEERTIDSDNYLPKRDEFELALIRAAQ
                     EDQKPIFGICRGLQLYNVAQGGSLHQSISEHWQDIDGQEVSQTIQLTQNSPLYDIYES
                     DPSVNSFHRQAIKDLAPDLEIIALSDNQQIIEAVHSAYPTKFLGVQWHPELLYGKREI
                     EKDLFHYIVNKL"
     gene            complement(12119..12757)
                     /locus_tag="U1087_000013"
     CDS             complement(12119..12757)
                     /locus_tag="U1087_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensing transcriptional repressor Rex"
                     /protein_id="HEM4754548.1"
                     /translation="MKNDKKSNIPRATAKRLSLYYRIFKRFYAGNIEKASSKEIAEAI
                     GIDSATVRRDFSYFGELGRRGFGYNVKELMDFFADILNDTSITNVMLVGVGNMGRALL
                     HYRFHERNKMKIVMAFEADDNPAVGTTDENIPIHAISEIKERISEANSQTAILTVPSV
                     KAQEVTDILVEAGVKGILSFSPVNLSVPKDVVVQYVDLTSELQTLLYFMRKG"
     gene            complement(12892..13095)
                     /locus_tag="U1087_000014"
     CDS             complement(12892..13095)
                     /locus_tag="U1087_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4649 family protein"
                     /protein_id="HEM4754549.1"
                     /translation="MIEIHYLDAYKQERIQTFENKDVAILAFAGCLTLPDYYPVTSIT
                     QDGQALDYKGTIGDLYRYLQTLD"
     gene            complement(13097..13441)
                     /locus_tag="U1087_000015"
     CDS             complement(13097..13441)
                     /locus_tag="U1087_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1831 domain-containing protein"
                     /protein_id="HEM4754550.1"
                     /translation="MAFQQSVTLKDCNFTYHISPAIKKYTLRDNTFEQTKAGHYQLTR
                     LLEEIPNSNQGFLLKIIINQDLTGFKINITDKSGLHLVNIFKPESNKVIQEKFYFLMD
                     SLIDRDIFTKEA"
     gene            complement(13443..14558)
                     /locus_tag="U1087_000016"
     CDS             complement(13443..14558)
                     /locus_tag="U1087_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEM4754551.1"
                     /translation="MIYLDNAATTALSPTALQRMMEVAQENYGNPSSIHQSGRKANQC
                     LRQSRQEIAQILSASPEQIIFTSGGSEADTLAIQGYALAQQSKGKHLITTAIEHHAVL
                     HAMQYLEDRFGFEVTYIQPVNQVITAQQIQDALRSDTILVSVMFANNETGQLLPIKEI
                     GELLADHQAVFHVDAVQAIGKIAFSPSDYGIDLLAASAHKFHGPKGTGFLYSKVHKFD
                     SLIHGGKQEQQHRAGTENLPAIAAMATALTEQYESLDMHHKHVSELRQHIIEGLSGLN
                     YYLNQAGPHLPHVLNIGFPGKLNEQLLMQLDLAGIAVSSGSACTAGVVQNSHVLEAMY
                     GKDSHRLKESIRISLSEINTKEEIDTLIIELKKILGG"
     gene            complement(14569..15546)
                     /locus_tag="U1087_000017"
     CDS             complement(14569..15546)
                     /locus_tag="U1087_000017"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HEM4754552.1"
                     /translation="MVQPLGEHNIKLFSLNSNRDIAEKIADSAGIPLGKLSSRQFSDG
                     EIQINIEESVRGVDVYIIQSTSYPVNNHLWELLIMIDACKRASANTITAVIPYFGYAR
                     QDRTASPREPITAKLVANMLVKAGVDRVLTLDLHASQIQGFFDIPVDNLLTEPLFAAY
                     YMEKGLCGEDVVIVSPKNSGIKRARNIAEFLNAPIAIIDYAQDDSERSEGYIIGDVAG
                     KKAILVDDILNTGRTFSQASKIVQEGGATEIYAVASHGLFAGTAAQLLDEAPIKEILV
                     TDSVASKEQHPKNIAFLTASDLIADAIHRIQEHQPLSPLFKFTSPEKEN"
     gene            complement(15690..16256)
                     /locus_tag="U1087_000018"
     CDS             complement(15690..16256)
                     /locus_tag="U1087_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HEM4754553.1"
                     /translation="MKNHLEIEYKTLLTKSEYKRLLTDFSDVSPILQTNHYIDTPDLD
                     MKNHRFSLRIRTFKDSAELTLKIPQEVGNQEYNQVLDIQTAHHLLENFQLPAGQISDI
                     ISATEIPLDKLAVWGILTTKRYEKQTSIGLMALDENDYVGQKDYELEVEVTDADAGKI
                     LFDEFLKKKSIQFKYASSKVARTAAHMK"
     gene            16343..17014
                     /locus_tag="U1087_000019"
     CDS             16343..17014
                     /locus_tag="U1087_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase family protein"
                     /protein_id="HEM4754554.1"
                     /translation="MDFNWEEFLDPYIQTVGELKIKLRGIRKQYRKANRHSPIEFVTG
                     RVKPIESIKEKMALRHIKLENLAQDMQDIAGLRIMVQFVDDIEEVLAILRKRKDMQIV
                     HERDYINNMKASGYRSYHVVIEYPVDTINGNETVLAEIQIRTLSMNFWATIEHSLNYK
                     YKGNFPEEIKKRLEVTAKIAYELDEEMRKIRNDIQEAQALFDPAYRKLNDGVGNSDDT
                     DEEYR"
     gene            16989..17816
                     /locus_tag="U1087_000020"
     CDS             16989..17816
                     /locus_tag="U1087_000020"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002933692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HEM4754555.1"
                     /translation="MIQMKNTGRKKIALLASRNPKSEAVSKELWTKLKEANFILTPKN
                     PDIVISIGGDGMLLSAFHKYEKLIDRVRFVGIHTGHLGFYTDYRDFEVDKLIENLKLD
                     TGARVSYPILNVKVKMTDGRIVEARALNEATVKRLSKTMVADIIINNVPFERFRGDGI
                     SVSTPTGSTAYNKSLGGAVLHPTIEALQIAEVASLNNRVYRTLGSSVVVPKKDKIVIE
                     PKHSDRYSIAVDNKTFVYDSIESIEYQIDNSKIHFVATPSHTSFWNRVKDAFIGEVE"
     gene            17816..18709
                     /locus_tag="U1087_000021"
     CDS             17816..18709
                     /locus_tag="U1087_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEM4754556.1"
                     /translation="MRFEFIADQHTKIKTFLKKHGVSKGLLAKIKYTGGNIWVNDIER
                     NATYLLDIGDRVTIDIPAEEDLTGSLKPISFSLDIVYEDDHFLAINKPVGYASIPSAL
                     HSSTIANFVKGYLIEQNYENKQVHIVTRLDRDTSGVMLFAKHGYAHARLDKQLQAKLI
                     HKRYYALVKGNGQLEETGDIIAPIGRPEDSIITRCVTKNGKYAHTSYRVVQSWGDIHL
                     VDIQLHTGRTHQIRVHFSHIGFPLLGDDMYGGSLECGIERQALHCHNLAFDNPFSAER
                     IDLEAPLPEDFQAVINQLISK"
     gene            18727..19701
                     /gene="pta"
                     /locus_tag="U1087_000022"
     CDS             18727..19701
                     /gene="pta"
                     /locus_tag="U1087_000022"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HEM4754557.1"
                     /translation="MKIFEQLATKLEGKKVRIVLPEGEEPRILQATKRLVNESDVVPV
                     LLGNPDRIKIYLDIEGITEGFEIIDPAHYDRYDEMVAALVERRKGKVSEEQAHELLKD
                     VNYFGVMLVYMGVVEGMVSGAIHSTASTVRPALQIIKTEPGVSKTSGAFLMVKGEERY
                     IFGDCAINIDPDAQTLAEIAINSARTAKMFGIDPKVAMLSYSTKGSGAGPKVDKVVEA
                     TKIAQKLRPELDLDGELQFDAAFVPTTGKLKAPGSSVAGQATVFIFPGISAGNIGYKI
                     AERMGGFAAVGPVLQGLNQPVNDLSRGCNPDDVYNLTLITAVQALEHR"
     gene            19703..21442
                     /locus_tag="U1087_000023"
     CDS             19703..21442
                     /locus_tag="U1087_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4754558.1"
                     /translation="MKFLSRYFKDYIKESILGPVFKLLEACFELLVPLIIAYIVDTII
                     PNGSQGNLVAMLFLLVGIACIGIIVSLIAQYYSAKAAVGVTKELTNDLYQKVLSLPKS
                     SRDILSSSSLLTRLTSDTLQIQTGINTFLRLFLRAPIVVFGSLIMAFYISPSLSAYFL
                     GMIILLIFIVTVISVMTSRIYQSMRKELDGLVGQVRETVTGWRVIRAFGQREREIKAF
                     QGINQIYKKQQLQAGFWSSLLSPLTFLVVNGTLLILIWQGNIAISHNLLEQGMLVALI
                     NYLLQILVELVKMILVVSTLNQTYISAQRIQEVFDQTSEDVESSLPRVVSEDKEIIFS
                     VRHLSFSYPKSAEESLSDIAFDLRKGQFMGIIGGTGSGKSTLVDLLQALYSVPTNQLS
                     LFIDGKSPKNLKEWRQQIAIVPQQAQLFAGTIRSNLSLGLEEISDSDLWSALEIAQAK
                     SFIEDKGGLDSPVEAFGKNFSGGQRQRLTIARAVLQKAPILILDDATSALDYLTESRL
                     LAAIRQELPGQNLIMVSQRTNSLRTANQILVLEQGRQVGLGRHEDLLRSSAIYQEIHQ
                     SQQQGEEDSYETI"
     gene            21429..23171
                     /locus_tag="U1087_000024"
     CDS             21429..23171
                     /locus_tag="U1087_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4754559.1"
                     /translation="MRQSSFKELVRLVLHQPLRMSLMLVGTLVQVLLTVYLPILIGQA
                     VDAVLIANGQVLLGILGKMVMVILLNTLMQWYLPLVTNRLVYGMVADLREQVYVKLHQ
                     MPLSYLDRQSVGDLVARFSSDSEQLTNGLLMIFNQFFIGILTIFLTIFTMARLDLTMM
                     LVVVALTPVSLLVARYIAKKSYGYYRQQTQARGKQSQLLEESISQLTLVQSFNAQEQF
                     TQGFQVVNDQYATYSQQAIFASSTVNPSTRFINAIIYALLAGLGALRIMAGNFTVGSL
                     TTFLNYASQYSKPFNDISSVLSELQSALACADRLFAILDLDSIDDQAERKIDSEELKG
                     AISFDNVSFSYSPDRSLIEHLDIDVKAGQKVAIVGPTGAGKSTMINLLMRFYDVTAGQ
                     IVLDGVPISQYSREDLRRQIGMVLQETWIKSGTIHDNIAYGYPNATRELVIEAAKAAN
                     ADFFIRQLPQGYDTVLADGGEGLSQGQRQLLSIARVFVKIPKILILDEATSSIDTRTE
                     ILVQEAFAKLMEGRTSFIIAHRLSTIQSADLILVMVDGKIVEQGNHEALMAEQGVYYQ
                     MQTSQQTEEDESVR"
     gene            23155..23547
                     /locus_tag="U1087_000025"
     CDS             23155..23547
                     /locus_tag="U1087_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HEM4754560.1"
                     /translation="MKVLDKLNLQPITVLDDYQATMLNEKEVLLTTKVTEKSLNPYGM
                     AHGGFLFTLADSVAGLTTVARGSYSVTLQSNIHYMKAAKLGDTLSVIGSCTHDGSRTK
                     VVEVKIENQDKQLLASASFTMFVTGKVE"
     gene            23725..24885
                     /gene="mutY"
                     /locus_tag="U1087_000026"
     CDS             23725..24885
                     /gene="mutY"
                     /locus_tag="U1087_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HEM4754561.1"
                     /translation="MLNLKEYGIEMWPEEKIQAFRKALLDWYDANKRDLPWRRTKDPY
                     AIWVSEIMLQQTRVDTVIPYYERFLYHLPTISDLAQAPEEVILKLWEGLGYYSRVRNM
                     QKAAQQMVEDFDGQFPTTHAAISSLKGIGPYTAGAISSIAFNLPEPAVDGNVMRVLSR
                     LFEVDYDIGLPANRKIFQAMMELLIDPERPGDFNQALMDLGSDIESPVNPRPQDSPVK
                     AFSAAYLNGTMDKYPIKAPKKKPISVAYQGFLIRNKDNQFLLEKNNEAGLLSGFWSFP
                     LLEKGAIVDKQVSLFEVAEEVVQPDIRQSFTELYGLAVDWQEQEFGIVQHIFSHRKWQ
                     IEMVEGVAETLNLPESKELKWVSVEDFPTYPFAKPQQKMWENFIKEKEKQKS"
     gene            complement(25568..26368)
                     /locus_tag="U1087_000027"
     CDS             complement(25568..26368)
                     /locus_tag="U1087_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM4754562.1"
                     /translation="MILGDILKEYRSKNKLSMDKFAELSGLTKGYISILEKNQHPKTK
                     KALLPTMDTLEKVAKGMAISVGELIEQLDSNQDIALTITPSQFKLFQQPIHPEVQTLD
                     NELKGDFHAQWLTFGQEQLAAMQTTSVTPSASILHLDDYREQIELPVPGKVSAGTGYW
                     QDTDMNNLVSFYNDEIPDNQSYDTIAQVVGDSMAPHIEDGDYLFIRLAPHIPLNTIGI
                     FSVNGENFVKKFKGNYLQSLNPDYDDIYFSPEDDIRPIGQVVDIYSPD"
     gene            26499..26969
                     /locus_tag="U1087_000028"
     CDS             26499..26969
                     /locus_tag="U1087_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754563.1"
                     /translation="MKRMTEISWNDIYKEWETYANHFGLTTPINTEKLRDQKSKDFGK
                     GSLITLDLLADYDTDSEKTAAIWVASFCRDLIQDYAYLLNGRAYLTVNQIYFQALKQF
                     QSEAVIWSKPLTRLQPKLFVSYRLLENLDLSHYSCVVELAMLQASLVRTQILEK"
     gene            26989..27531
                     /locus_tag="U1087_000029"
     CDS             26989..27531
                     /locus_tag="U1087_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754564.1"
                     /translation="MFNLLNKKAEVSKVAEYWNDTLIERGILSADELLEGKCWRCKSS
                     HGVAVCQIVSSKWSKDTSLANQMVLCLSCQHEKPDVADTEIVWQWLEVENNERYWTLQ
                     GMAEYEKMYKKSVLQELWDMGIRDGEEVETLVNKVTSLSRKNDIVLNRATLAGLFRCE
                     IEQMRRKAFLNWTGMFKLVS"
     gene            complement(27757..28800)
                     /locus_tag="U1087_000030"
     CDS             complement(27757..28800)
                     /locus_tag="U1087_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004269878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEM4754565.1"
                     /translation="MATITKRGNSYRATVSLYKKGKYKRETKTFSNRKDAELWTLEME
                     LEKGRGKNIAERSTLFPDFYRNWVHTVKKTDVREATFINYKRTLVIVDDLFDGIQLKH
                     LDDLIMQKKIDQYAETHSKKTVKELVLKIRGSLKYAYARGLISNDFGHLLKSKGQEQP
                     KRNILSITKLKKLRQYCLSHTEDEFNVLVALALETGARRGELLGIKKEDIFEYGIKIL
                     RSISPTNDDTQLKTKHSKRDISINEGVYQAVTKLAQTKEGYIFDWNGFKQASQLQKLL
                     KQLGLTKTTFHGLRDTHASFLFSKDISLDYISRRLGHNSILTTQQYYLELIPEKKHQQ
                     DADALSLLNDLSL"
     gene            complement(29168..29584)
                     /locus_tag="U1087_000031"
                     /pseudo
     CDS             complement(29168..29584)
                     /locus_tag="U1087_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909915.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(29707..30048)
                     /locus_tag="U1087_000032"
                     /pseudo
     CDS             complement(29707..30048)
                     /locus_tag="U1087_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909915.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            30327..31094
                     /locus_tag="U1087_000033"
     CDS             30327..31094
                     /locus_tag="U1087_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEM4754566.1"
                     /translation="MNKRERLEEITRLVNKKGTVRISEIVELLNVTDMTVRRDFIELE
                     EQGVLTKIHGGARSNKAFQYREYSHSEKHIQNKEAKQEIAERAAQLIEDGDTVFLGPG
                     TTVAFLAEAIKNPRLTVITNCMPVFTILSQKKTEEFQVFLLGGEYRQVTESFVGEITN
                     TSLEKMRFSKIFFSGNGLKGTDVMTSTLAEAYTQNIAIKHSLEKYLLLDASKIGKDDF
                     TSFCDLNDVTALVTDMNAKDENYQLLSKHIEIITTKS"
     gene            31300..31722
                     /gene="lacA"
                     /locus_tag="U1087_000034"
     CDS             31300..31722
                     /gene="lacA"
                     /locus_tag="U1087_000034"
                     /EC_number="5.3.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002982747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-6-phosphate isomerase subunit LacA"
                     /protein_id="HEM4754567.1"
                     /translation="MTIIIGADPAGSKLKDIIKDYLLEKSYDFKDVSDGSDFVDTTLA
                     VVAEVNQQEGNLGIVIDAYGVGPFMTATKVKGMIAAEVSDERSAYMTRGHNNSRIITI
                     GSEIVGEGIAKNIVKGFVEGEYDGGRHQIRVDMLNKMC"
     gene            31749..32264
                     /gene="lacB"
                     /locus_tag="U1087_000035"
     CDS             31749..32264
                     /gene="lacB"
                     /locus_tag="U1087_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-6-phosphate isomerase subunit LacB"
                     /protein_id="HEM4754568.1"
                     /translation="MKIAIGCDHIVTYEKIAVVDYLKNQGYEVLDFGTYDNVRTHYPI
                     FGKKVGEAVASGQADLGICICGTGVGINNAVNKVPGVRSALVRDMTSALYAKEELNAN
                     VIGFGGKITGELLMCDIIEAFIKAEYKPTEANKRLIEKIAAVETLNQEQANPEFFTEF
                     LDKWECGEYHD"
     gene            32274..33206
                     /locus_tag="U1087_000036"
     CDS             32274..33206
                     /locus_tag="U1087_000036"
                     /EC_number="2.7.1.144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016250260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-6-phosphate kinase"
                     /protein_id="HEM4754569.1"
                     /translation="MILTITLNPSVDIAYQLDTFHLDTVNRVENVQKTAGGKGLNVTR
                     VLKQIGEDVVATGFIGGEIGSYVKKQLTRNDVKNSFVEIGSETRNCIAVLHDGKQTEI
                     LEQGPTIQEHEALNFIEHLEIVLNNVDVVVISGSLPKGLASNYYVQLVELCKKFGIAV
                     VLDCSGEALKNVLESQQKPTVIKPNTEELSQLIGKEVTDDIQELKSVLSGQLFQGIDW
                     IVVSLGAQGAFAKHNDKFYRVRIPKIKVVNPVGSGDSTVAGIAAGLVHALPDAELLKN
                     ANVLGMLNAQEEQTGYVNLENAESLYSQIEVEEV"
     gene            33208..34185
                     /gene="lacD"
                     /locus_tag="U1087_000037"
     CDS             33208..34185
                     /gene="lacD"
                     /locus_tag="U1087_000037"
                     /EC_number="4.1.2.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018376130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase"
                     /protein_id="HEM4754570.1"
                     /translation="MVVTADKRKYMEKVSNEAGIISALAFDQRGALKKMMAKHQAEEP
                     TVEQMEELKTLVSEELTQFSSSILLDPEFGLPASRARDEQCGLLLAYEKTGYDTSSTS
                     RLPDCLVEWSVKRLKEEGADAIKFLLYYDVDGDSYVNLQKQAYIERLGSECQAEGLPF
                     FLEILSYDETIEDNASVEFAKVKPRKVNEAMRVFSDERFGVDVLKVEVPVNMNFVEGF
                     GTGEVVYTKEEAAEYFRQQEASTHLPYIYLSAGVSAKLFQDTLVFAHEAGAKFNGVLC
                     GRATWAGVVPVYIEQGEEAAREWLRTVGRENIEGLDAVLSQTATSWLEK"
     gene            34374..35207
                     /locus_tag="U1087_000038"
     CDS             34374..35207
                     /locus_tag="U1087_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017770255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
                     /protein_id="HEM4754571.1"
                     /translation="MFRIIQSLNNNAALVKNEHGEQAVVMGLGITFQKKKGDLIVKDK
                     IENIFSLKNDEAKENFLTLLKDIPLDFISATYTVINHLVETYHYPVQEYLYVTLTDHI
                     YCAYQAVLKNAYQESKLPNISAEYPLEYKMAREALAMFREKLLNDFPNDETGKIALHL
                     INAKGETIHPTSEEHDISKKIIAEVEQILIENGIKRSKENSNFYDRFMIHLSYFLNYL
                     DRSHQSNESIASLEQYIKLQNPRAHQVGSQIFEMITSLVDEPVNDSERFYIVLHIQRL
                     L"
     gene            35389..35706
                     /locus_tag="U1087_000039"
     CDS             35389..35706
                     /locus_tag="U1087_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009730102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HEM4754572.1"
                     /translation="MNREEITLLGFEIVAFAGDARSRLMEALAAAQKGDYAKAEELVE
                     AANACIVEAHHAQTSLLQKEAAGEDLAFSVTLMHGQDHLMTTLLLKDMMSHMIELYKR
                     GDK"
     gene            35706..37385
                     /locus_tag="U1087_000040"
     CDS             35706..37385
                     /locus_tag="U1087_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003048452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose transporter subunit IIBC"
                     /protein_id="HEM4754573.1"
                     /translation="MNKLIEFIEKGKPFFEKISRNPYLRAIRDGFIAAMPVILFSTLF
                     LMVAFVPNIFGFTWSDEAVAAIMKPYGYTMGIVAVLVAGTTAKSLTDAFNRQLPKTNQ
                     INFISTMIASISGFLLLASDGIEGGFANGYMGTKGLLTAFLAAFITVNIYKVCVKNNV
                     TIRMPDEVPPNVSQAFKDVIPYALSIFVLYGIDLVTRQFLGTNVAEAILKLFEPLFTA
                     ADGYVGITIIFGAYALFWFVGIHGPSIVEPAIAAITYANIETNFQLLQAGQHADKILT
                     SGTQMFIVTMGGTGATLVVPFMFMWLTKSKRNKAIGRASVVPTFFGVNEPILFGAPLV
                     LNPVFFVPFILAPIANVWIFKFFVDTLKMNSFSVNLAWTTPGPLGIVMGTNFAPLAFA
                     LAILLVFVDVLIYYPFLKVYDEQILAEEQSGKVENSLKEKVAANFNTAQADAILEKAA
                     VDTEISEQTNVLVLCAGGGTSGLLANALTKAAKEYGVPVTATAGSYGAHREILPEYQL
                     VILAPQVASNYDDIKQETDALGIKLAKTEGAQYIKLTRDGQGALDFVKQQF"
     gene            37456..38862
                     /gene="lacG"
                     /locus_tag="U1087_000041"
     CDS             37456..38862
                     /gene="lacG"
                     /locus_tag="U1087_000041"
                     /EC_number="3.2.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003060941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-galactosidase"
                     /protein_id="HEM4754574.1"
                     /translation="MVKTLPKDFIFGGATAAYQAEGATQTDGKGRVAWDKYLEDNYWY
                     TAEPASDFYNRYPVDLELSEQFGVNGIRISIAWSRIFPTGFGAVNPKGVEYYHKLFAE
                     CHKRHVEPFVTLHHFDTPETLHSNGDFLNRDNIEHFVNYAAFCFKEFPEVNYWTTFNE
                     IGPIGDGQYLVGKFPPGIQYDLAKVFQSHHNMMVSHAKAVKLYKDAGYSGEIGVVHAL
                     PTKYPYDPSNPDDVRAAELEDIIHNKFILDATYLGYYSEKTLEGVRHILKVNGGELDL
                     RDEDFAALDAAKDLNDFLGINYYMSDWMRAHDGETEIIHNGKGEKGSSKYQIKGVGRR
                     ESPVDIPKTDWDWIIYPQGLYDQIMRVKNDYPNYKKIYITENGLGYKDEFVDGTVYDD
                     GRIDYVKKHLEVISDAISDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFETQERY
                     PKKSAYWYKKVAETQVIE"
     gene            38927..39820
                     /locus_tag="U1087_000042"
     CDS             38927..39820
                     /locus_tag="U1087_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase family protein"
                     /protein_id="HEM4754575.1"
                     /translation="MFELKNENLTVQFSELGGQIISIKDKDGIEYLWQGDPTYWSGQA
                     PVLFPICGSLRNDWAIYEPAERPTFTGTIPRHGLVRKMLFKNVSSTENSLEFSISSNE
                     ETVKNYPFEFELSINYSLLGNTIRTEYRVKNLEGHRKLPYFIGGHPGFNCPLLDGESY
                     EDYYLEFEKVESCTVPRSFPETGLLDLRDRRPFLENQKTLDLSYKLFEHDAITLDQLA
                     SRKVTLKSKNHQKKLSIAFDDFPYLVIWSTTNQSPFIALEPWSGLSTSLEESDIFNAK
                     RNISYVAPKEVDKKHFDIIIE"
     gene            40156..40776
                     /locus_tag="U1087_000043"
     CDS             40156..40776
                     /locus_tag="U1087_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016250587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754576.1"
                     /translation="MNDCDFKDFVGKNFADELPDDDSKIMIHFHTMILELGSIIAALE
                     IVKIVNDEWHDRVVQSSIRYDIVRNVTYESLFYRVVFGITKIFDVREKNGIFKILSKL
                     RHSTKDRSLLSILSTIQEGIDKEQKNIDEIKLLRDKHLAHLDKEMVFSTERLDIGILY
                     YYFEAIEIKSIYTACIELYNTLYGDNQQQVELPKREIILKRFFLEE"
     gene            complement(41073..41309)
                     /locus_tag="U1087_000044"
     CDS             complement(41073..41309)
                     /locus_tag="U1087_000044"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754577.1"
                     /translation="MDTKQALKCPKCKSIKLQTYVPTQKRYSRKAGMIGHAINGIEGA
                     MFAMLYEADRTYYRCQHCGYRFSRKENRFISNIE"
     gene            41573..42853
                     /locus_tag="U1087_000045"
     CDS             41573..42853
                     /locus_tag="U1087_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015604466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase/cysteine synthase"
                     /protein_id="HEM4754578.1"
                     /translation="MTREFSFETLQLHAGQEVDSASKSRAVPIYQTTSYVFEDAQEAE
                     DLFALRKSGNIYTRITNPTVSTFENRVAALEGGIGALATSSGMAAITYTILALAHAGD
                     HIVVATTLYGGTFNLFKETLPRYGITTSFVDIDDFEAVEAAIKDNTKLVFIETLGNPV
                     INIPDLEKLAEIAHNHHIPLVSDNTFATPYLINVFSHGVDISVHSATKFIGGHGTTIG
                     GVIVDSGKFDWAASGKFPQFVEEDPSYHNISYTRDIGAAAFIVAVRVQLLRDTGAALS
                     PFNAFLLLQGLETLSLRVERHVSNAEKIVDFLLSHPQVESVNYPSLPDSPYKALADKY
                     LPKGVGSIFSFQVKGGAEEARKVIDSLEIFSNLANVADAKSLVVHPATTTHAQLAPED
                     LLAAGVTPNQIRLSVGLENINDLIEDLQLALDKL"
     gene            complement(42931..44463)
                     /locus_tag="U1087_000046"
     CDS             complement(42931..44463)
                     /locus_tag="U1087_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM4754579.1"
                     /translation="MLLATQHLTLDHQKDLRNLVHDLNFIVNPGDKIAIIGEEGNGKS
                     SLLLTLMDSTLVADYLLISGSIHRYFHSPVYIPQGLPLKMAELTLNDYFFGDMGSNID
                     YHLLYLYADQLQFDSERFSSQQLIGSLSGGEKLKIQLIKSLATPSDIIFLDEPSNDLD
                     LDTLLWLENYIITSPKTILFVSHDEDFLSRTATKIIHLESVKKKTLAQTKVEELGYQD
                     YALKRHQAYQKQVQQARNDQKEFDKAMNKHLRQKSQVRHTLLNTHDATLGRLIAKKMK
                     NVLSREKRYERMKENLTQVPFHEDAISLFFSDISPLPARKQVLHLENFQLNIGGRQLV
                     QNIHFNLNGQEKIGIIGQNGIGKSSFLKIIYQKLRQRADINLGYMPQHYTEVLDESKT
                     PLDFLLENGNREQERLILTHLASLQFTRQEVHHKICELSGGQKAKLLLLKMVLEQVNF
                     LLLDEPSRNFSPTSQPYIRQLFADYPGGLVCVSHDRRFLKEVCQRIYRLTENGLEELE
                     QI"
     gene            44763..45254
                     /locus_tag="U1087_000047"
     CDS             44763..45254
                     /locus_tag="U1087_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM4754580.1"
                     /translation="MAITGIEQADILEIDKQVRLRRYDGQHDFAFEWHQDLELVWLID
                     GDQERYSLDLLDRMYDYLSKNGECYFIEIFEDGQFIPIGDVTLFADDFAIAIGDKRYW
                     EKGIGTKVLHRMIERARDVGLEEILVEEIYDWNTGSHKLFEKCGFEAVEKTKKGWSYK
                     MIL"
     gene            complement(45310..46050)
                     /locus_tag="U1087_000048"
     CDS             complement(45310..46050)
                     /locus_tag="U1087_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004254183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM4754581.1"
                     /translation="MAQLKINVHDLHKSYGKNEVLKGITAKFYEGDVVCIIGPSGSGK
                     STFLRTMNLLETITSGQVTVDGYDLTDPKTDVDAFRSNVGMVFQHFNLFPHMSVLDNI
                     TFAPIEHKLMDKSEAEKVGMELLEKVGLADKRDAMPDSLSGGQKQRVAIARALAMNPD
                     IMLFDEPTSALDPEMVGDVLNVMKDLAEQGMTMLIVTHEMGFARKVANRVIFTDGGEF
                     LEDGTPEQIFDNPQHPRLQDFLDKVLNV"
     gene            complement(46050..48248)
                     /locus_tag="U1087_000049"
     CDS             complement(46050..48248)
                     /locus_tag="U1087_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding
                     protein/permease"
                     /protein_id="HEM4754582.1"
                     /translation="MKKKLLMLLASILPVFFIFTGVKADDTIDVVFDNAYAPFEFKDS
                     DQIYKGLDVDIINEVAKRSGWTMTQSFPGFDAAVNAVQAGSADALMAGTTITEARKKV
                     FTFSDPYFDTKIVIATTKANTISSYKDLKGKTVGVKNGTAAQNFLEENKDKYGYNVKT
                     FDTGDLMYNSLSAGAVDAVMDDEAVIQYAIQQGQDLSIDIEGEAIGSFGFSVKKGSQY
                     EYLVEDFNKALAEMKKDGTYETIMNKWLGASTTSAESTDYSSRLSLTGNASAKATPVK
                     SSYTIVADSSFAPFEYQDELGNYVGIDMELIKAIAEQQGFTITIQNPGFDAALNAVQA
                     GQADAVIAGMSITDARKEIFDFSNAYYTSNILLAVKNGSDIASYEDLKGKTVGAKNGT
                     ASYSFLEENKAKYGYTLKAFDEASSMYDSLNSGSIDALMDDEAVLLYAIQQGRNFATP
                     IPGEKSGEYGFAVKKGANPELIEMFNNGLAALVESGKYDEILNKYFNSTEEASTTTST
                     VDETTIVGLLKNNYGQLLSGLGITIGLALLSFAIAIVIGIIFGMFAVSPVKALRVTSS
                     VFVDVVRGIPLMIVAAFIFWGIPNLIESITGQQSPINDFVAGTIALSLNSGAYIAEIV
                     RGGIQAVPVGQMEASRSLGISYGTTMRKIILPQAGKIMLPNFINQFVITLKDTTIISA
                     IGLVELFQAGKIIIARNYQSFRMYAILAIIYLVVITLLTRLARKLEKGGK"
     gene            48446..50431
                     /gene="uvrB"
                     /locus_tag="U1087_000050"
     CDS             48446..50431
                     /gene="uvrB"
                     /locus_tag="U1087_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit B"
                     /protein_id="HEM4754583.1"
                     /translation="MINRNTENQFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILMG
                     ATGTGKTYTMSQVIARVNKPTLVIAHNKTLAGQLYSEFKEFFPENAVEYFVSYYDYYQ
                     PEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYS
                     DSVVSLRPGQEISRDQLLNSLVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFR
                     VEFFGDEIDRIREIESLTGKVLGDVDHLAIFPATHFVTNDDHMETAIAKIQAELEEQL
                     KVFEAEGKLLEAQRLKQRTDYDIEMLREIGYTNGVENYSRHMDGRSEGEPPYTLLDFF
                     PEDYLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVH
                     QIVYVSATPGDYEMEQTDTVVEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINARVEKG
                     ERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLERTEIIRDLRLGVFDVLIGIN
                     LLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADKVTESMR
                     KAMDETARRRQIQMAYNEEHGIIPQTIKKEIRDLISVTKAVTQDKEEVVDFNALNKDE
                     RKAMIKKLEGQMQEAAEVLDFELAAQIRDMVIELKNM"
     gene            50665..56410
                     /locus_tag="U1087_000051"
                     /pseudo
     CDS             50665..56410
                     /locus_tag="U1087_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775141.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="G5 domain-containing protein"
BASE COUNT        16931 a        10068 c        12365 g        17049 t
ORIGIN      
        1 gctgtttcta agggtgaaca aatcgcaacg atttatgcca atgaaaatat ttcggaaaac
       61 atgcttacaa atttccgaaa aaatgttaaa atagataaag aaagtgtaaa aacgaaagaa
      121 atcatagaga ttatttctta atgtacggag aaaactatga aattgaataa atatattgac
      181 catacaatct tgaaacctga gacaacacaa gagcaggttg aaaagatttt ggcagaagca
      241 aaagaatatg attttgcaag tgtttgtgtt aacccaactt gggttgcttt agcagctgaa
      301 agcttgaaag atagtgatgt aaaagtttgt acggttattg gtttccctct cggagcaaac
      361 acccctgctg taaaagcatt cgaaacaaaa gatgcaattt caaatggagc agatgagatt
      421 gacatggtta tcaatatcgg tgctctgaaa actggaaatt acgatttggt tttggaggat
      481 attaaagctg ttgtagcagc aagtggtgat aaactagtca aagttatcat cgaagcatgc
      541 ctccttactg atgatgagaa agtgaaagct tgtcaattat ctcaagaagc tggtgcggac
      601 tatgttaaaa catctacagg attttctaca ggcggtgcta cagtagcgga tgttgcctta
      661 atgagaaaaa cagtgggtcc tgacatggga gtgaaggctt ccggtggtgc acgttcgtat
      721 gaagatgcca ttgcctttat cgaagcagga gcgtctcgta ttggtgcgtc atcaggcgtg
      781 gcaatcatga atggagcaca ggcggatgga gactattgat ttaattgaat tagctgtaaa
      841 aaacagtcaa aaagcatacg taccgtactc aaagtttcca gttagtgcag ttcttgtagc
      901 taagacaggg gaaatattta cgggtgtaaa cattgaaaat gcaagctttg gtttgaccaa
      961 ttgcgctgaa aggacagcta ttttcaaggc catttctgaa ggtgtgaaag atttttctga
     1021 gatcattatt tatggtgaaa cagaaaagcc aatatctcct tgtggagctt gtcgccaagt
     1081 tatggcagaa ttttttgata aggatttaaa agtgaccttg gtcgctaaag ataaatcgac
     1141 agtcgagatg acagtcgggg aattacttcc atattccttt acagacttaa cctagtctgt
     1201 atgacagtca tttgactgta gcaatattac tctgcaacaa tgtagttgca aaaagatttt
     1261 taggagggtt cagaaatgaa caagaaactt gttggacttg gtctagcagc tgttgcggct
     1321 gtatctttgg ctgcatgtgg taaccgtgct tcaaaaagca gtagctcaga agcatcttca
     1381 tcagcggaca catctgtgaa agctgctatc gttactgaca ttggtggtgt tgatgaccgt
     1441 tcatttaacc aatctgcttg ggaaggtctt caagaatggg gtaatgcagc tggtctttct
     1501 aaaggtaatg gctacgatta cttccaatca gctaatgaat cagaatacat tacaaacctt
     1561 gattcagctg ttgctggtgg ttacaacctt gtgttcggta ttggttttgc cttggagagt
     1621 gcgattgctg aggtagcacc aaataatcct gacacacact atgtaatcgt ggatagtgtt
     1681 gttccagatc aagacaacgt agttagcgta ggtttcgcag accatgaagc atcatatctt
     1741 gctggtgttg ctgcagctaa gtcaactaag acaaaccatg taggtttcat cggtggtatg
     1801 gaaggtgtta tcatcgatcg ctttgaagct ggtttcgttg caggtgctaa gtctgtaaac
     1861 aaagacatca agattacagt tgactatgca ggttcatttg gtgatgctgc taaaggtcaa
     1921 actcttgcag ctgctcaata tgctgcaggt gcagacgtga tcttccacgc ttctggtggt
     1981 actggtaacg gcgtatttgc tgctgctaaa gcagaaaatg aaactcgtaa tgaagcagat
     2041 aaagtttggg taatcggtgt tgaccgtgac caatcagcag aaggtgaata cacttctaaa
     2101 gatggtaagt cttctaactt tgtattggct tcaacattga aacaagttgg tacttcagtt
     2161 aaagatattg caactaaagc tgttgcaggt gaattccctg gtggtcaagt acttcaattc
     2221 tcattgaaag ataaaggtgt tgaattggca gaaactaacc tttcagaaga tgcttctaaa
     2281 gcagttgcag atgctaagca agctatcttg gatggtaaag tagaagttcc tgaaaaacct
     2341 taatgaattt cttttcgaca attccgattc ggcgacccga cggggtcgcc gttttcgggc
     2401 tgagattttt ctcagtaaag cctatcagct atggtaggtt ttactgacaa aaatggtata
     2461 gttgatgaag aattttaagg tactaaagtg gtactgaaga attttcagaa ggctatagtc
     2521 agaaaggata atagattatg actaaggatt atgtcattga aatgcgcaat atcactaaga
     2581 tatttggtga atttgtagca aatgaccaca tcaatttgaa tgtcagacgt ggtgaaatcc
     2641 atgcccttct tggtgagaat ggtgcgggta aatctactct gatgaatatg cttgctggct
     2701 tgttggaacc tacaagcggt gaaattgtta tcaacggtca atccgtgaag attgactctc
     2761 catccaaagc agcccaattg ggtattggta tggtgcacca acactttatg ttggttgatg
     2821 ctttcacagt tgctgagaac atcattcttg gttctgaaac caccaaaggt ggcgtgattg
     2881 accttaaaaa agctatcgca gaaattaaag aactttctgc taaatatggt cttgaagttg
     2941 atccaactgc aaaggttgca gatatttctg tgggtgcaca gcaacgtgta gaaatcctta
     3001 aaacacttta ccgtggagca gaccttttaa tttttgatga gccgacagct gtattgaccc
     3061 ctgcggaaat tgcagagctc ttgaaaatta tgaaagcctt ggttgaagaa ggtaaatcta
     3121 ttattttgat tacgcacaaa ttggatgaaa ttcgtgcagt tgccgatagt gtaacagtta
     3181 ttcgtcgagg taaatcaatc gaaacagttg ccgttgaggg agcaacaaac caagatttgg
     3241 ctgagtggat ggttggacgt tccgtttcct ttaaaacaga gaaagttgaa gcgagtccta
     3301 aagaagttat tttgtcaatt aaggatttgg ttgtcaatga aaaccgtggt attccagcag
     3361 ttaagggctt gtcgcttgat gttcgagcag gtgaggttgt tggtattgcc ggtatcgacg
     3421 gaaatggtca aagtgagttg attcaggcaa tcactggttt acgtaaggta aaatctggct
     3481 caatcactat caaaggtgag gaagtagttg gtaaaactcc acgtaaaatt acagaaatgc
     3541 aagtgagcca cgttcccgaa gatcgtcatc gcgatggact cgttcttccg atgactgttg
     3601 ctgagaactt tgcgcttcaa acttactata aagaaccgat ttcaaaaaat ggtatcttga
     3661 actataatat cattaatgaa aaagcacgcg cgttaatgga agaatttgac gttcgtgggg
     3721 caagtgaact cgtcccaatc aaggctcttt caggcggtaa ccagcaaaaa gctatcatcg
     3781 cgcgtgaaat cgatcgcaac ccagaccttt tcattgttag ccaaccaaca cgcggtttgg
     3841 acgttggtgc tattgagtat attcgtaaac gtctcattgc agaacgtgat aagggtaagg
     3901 ctgttcttgt tgtcagcttc gaattggatg aaattttgga tgtatcagat agaattgctg
     3961 ttatccatga tggtgtcatc catggtattg ttgaacctgc taagaccaat aaacaagagt
     4021 taggtgtctt gatggcaggt ggacatattg agaagggaga agaacatgct taataaatat
     4081 aagaatttgg cccttccatt aatggctgtg gtcagcggta tcctacttgg agcgattgtc
     4141 atgcttgttt ttggctacga tccaatttgg ggctatgaag agttattcta ttcagctttt
     4201 ggtaatataa aatcaattgg tgaaattttc cgtgcaatgg caccacttgt tttcactgct
     4261 ctcggtttcg cagtagctag tcgtgcaggt ttcttcaacg ttggtttgtc tggtcaggcc
     4321 tatgttggtt gggtttttgc tggatggttt gccttggcaa atcctgactt accacgtcca
     4381 gttttgattt tgggaacagt cttaattgcc atgttggcag gcggtattgc tggagctatt
     4441 ccaggtattc tacgtgccta tttgggaaca agtgaagttg tcgttacgat tatgatgaac
     4501 tacatcttac tctattcatg taactatatc attcgtgatg tatttgcaga tagtttgatg
     4561 aagaatacag actcgacagt taacgtgtca gcaaatgcct cttaccaaac agagtggctc
     4621 cgtgcattga cagataactc acgtatgaat attggtattt tctttgccat tattgcagtt
     4681 tttgtgattt ggttcctatt gaccaaaacg actcttggtt ttgagattcg ctcagtgggg
     4741 cttaacccaa cagcatcgga ttatgcgggt atgtctgcga aacgtacgat tattctatct
     4801 atgattattt caggtgctct tgcgggtctt gggggagcta tccaaggttt gggtactttc
     4861 caaaacgttt atatccaaag cggtaacttg gatattggtt ttaatggtat gtcagtagcg
     4921 cttttagctt ctaattcacc gttaggtatt ccattggctg cctttctatt cggtgttctt
     4981 tctgtcggtg ccccaggtat ggtacgtgca cagattccac ctgaattgat caacgttgtt
     5041 acggcatcaa tcattttctt tatcggtgtg aaatttattt ttgaacaatt attaaaatct
     5101 agaaataaag cgaaaggagc gaaataagat gaatgtttca attcttgcct tactcatttc
     5161 gcaaatgttg atttattcag cacccttaat ctttaccagt cttggaggag ttttctctga
     5221 acgcggtggt attgtaaacg ttggtctaga aggaatcatg gttatcggtg cctttgctgg
     5281 tgttgttttc aatatcgaat ttgcagggac atttggtaat gctactccat tattagctgt
     5341 tattgtagga ggtcttgctg gtgttgtttt tgccgctatt catgcgatgg cgacgattaa
     5401 tttccgtgca gaccacgttg tatcaggtac ggtgttgaac cttttggctc cagcattggg
     5461 agtttttcta gtcaaggtta tctataataa gggtcaaact gatagtatta ctgaatcatt
     5521 tggtaaattt tcattccctg tcttggcaga tattccaatc attggtgaaa ttttcttcaa
     5581 aaatacaagc ttgatgggtt atgtagctat tgcaacagca tttcttgctt ggttcatcct
     5641 ttataaaacc aagttcggtt tgcgccttcg ttcagtaggt gaacatccgc aagcagcgga
     5701 tactttggga atcaatgtct acgctatgcg ttatgcaggt gtgttgattg ctggtttcct
     5761 tggtggtgtt ggtggagctg taagtgctca atcagtgaat atcaacttct ctgcaacaac
     5821 aatcgtaggt tcaggtttca tcgctctagc agctgtgatt ttcggtaagt ggaatccaat
     5881 tggcgctatg cttgccagtc tattctttgg tctttcgcaa agtttggcag tagtgggtgg
     5941 acaattacca ggattgaaag atattccaac ggtttatctt caaattgcac catatttgat
     6001 tactgttatt gctctgtctg ctttctttgg taaagcagtc gctcctaaag cagacggtat
     6061 caactatatc aaatctaaat aaaaaggtcc actggacctt tttatcatgt tctttgctgt
     6121 acaggaaatg aataattgtc ctattcaaag gaagaggagt tatagagtca actgtcacag
     6181 atggaattgc tatgttacgt tatgatatta gaaggtaaaa aaggcgagct attgctcacc
     6241 ttttttacta ttttatataa ttagttttta acaccagctg caatttctgg gtttgcgaaa
     6301 gcatcatcga tgatgtcttt caattgttta gcagatgctt gcattttttg caattcagct
     6361 tcgctcaatg ggatattgac tggacgaacg ataccgtggg caccgatgat agcaggttga
     6421 ccgatgaaga catcttcaac accttcgtat tggccagctt ggtaaacaga caatggaagt
     6481 actgcatttt catcatcaaa gattgcttta gtgatacgtg caagtgcaac accgataccg
     6541 tagtaagttg cgcctttttt gttgatgatt gagtaggctg catcacgaac agatacaaac
     6601 aagtcaacaa gaccttgctc atcaatatcg cggttatctt gcaaccagtc gtacaatttc
     6661 acaccagcaa cgttggcatg tgaccaaact gcaaattctg agtcaccgtg ctcacccatg
     6721 atgtaagcgt gaactgaacg tgcgtcgata ccgattttct cagccaatgc ttgacggaaa
     6781 cgagctgagt caagagaagt accagaaccg ataacacgct ctttagggaa accagagaat
     6841 ttccaagttg agtaagtcaa tacgtcaaca gggttagcgg caacaaggaa gataccgttg
     6901 aaaccagagt taacgatttc tgtaacgatt tgttggttga tacgaaggtt tttctctacc
     6961 aattcaaggc gagtttcacc tggtttttgt ggcaaaccag ctgtcaaaac aaccaagtct
     7021 gcgtcatgag catctgaata ctcagcagaa tagatttttt tagggaatgt gaaggccaat
     7081 gcgtggctca agtcttctgc atcaccttga gtacggtctt tgttgatatc gatgataccc
     7141 aattcttgac caatcccttg gttaacaaga gcataagcat aagcagaacc tacggcaccg
     7201 tcaccgacaa ggattacttt tttgtgttgt ttagttgcag tcattgctaa acatctcctt
     7261 agttttattt ggggatgact tcatcccgac cataatacat tctagcatgt tttaagcttt
     7321 ttgtcacttg tgaaagcgcc tttgaaaatg tttacatgct agtttccaac aaagaaattt
     7381 attcgccaat atggtataat agaagcacaa tgactgttga aagaggcata taatgcaaga
     7441 taaaaactta gtaacggtta atctgaccaa tgagatgaaa tcatccttca tcgactatgc
     7501 gatgagtgtt atcgtttcac gtgctctgcc tgatgtacgt gatggtctga agccggttca
     7561 tcgccgtatt ttgtatggaa tgaatgaatt aggaattaca ccggataaac cacataaaaa
     7621 atcagcccgt atcacagggg atgttatggg taaatatcac ccgcatggag atggtgcgat
     7681 ttacgaagca atggttcgta tggcgcaatg gtggagctat cgtcacatgt tagttgatgg
     7741 tcacggaaac tttggttcca tggatggcga cggagcagcc gctcagcgtt atacagaagc
     7801 tcgtatgagc aagattgcgc ttgaaatgct tcgtgatatt aacaagaaca cggtaaattt
     7861 tgcggataac tatgacgcga gtgaacgtga gcctgaggtt ttacctgctc gtttccctaa
     7921 ccttctggtt aacggaacga ctggtatcgc cgttggtatg gctaccaaca ttcctccaca
     7981 caacttgggt gagactatcg aggcagttaa gctggttatg gacaatcccg aggtaacaac
     8041 acgtgagatt atggaagtct tgcctggacc agattttccg acaggtgcct tggttatggg
     8101 gaaatctgga attcaccgtg cttatgaaac tggtaaaggt tcaatagttc ttcgttcccg
     8161 cacagaaatt gaagaatatg gaaatggtcg tgaacgcatt gttgttacag agtttccata
     8221 tatggtcaat aagtccaagg ttcaagaaca tattgtcaaa ttagtccaag aaaaacgtat
     8281 tgaaggaatc actgctgttc gagacgaatc caaccgtgag ggtgtacgat ttgttatcga
     8341 agttcgtcgt gatgcttctg ctaacgttat tttgaataac ctattcaagc aaacacagct
     8401 tcaaaccaac tttagtttca acatgttggc catccaaaat ggtgtaccga aaatcctttc
     8461 tgtacgtcag attctagagt cttatattga acaccaaaaa gaagtagtca ctcgtcgtac
     8521 acgatttgat aaagaaaagg ctgaggcgcg tgctcatatc ttagaaggct tgctgattgc
     8581 tcttgaccat attgatgaag tcatacgtat cattcgtaat tcagaaacgg atgcacttgc
     8641 tcaagctgaa ttgatggaga aatttgacct ttctgaacgt cagagtcagg ctattcttga
     8701 tatgcgtctt cgtcgtttga caggtttgga acgcgacaag attcaatcag aatatgatga
     8761 gttagtggcc ttgattgcag atttggctga cattctagct aagcctgagc gtgttgttca
     8821 gattattaaa gacgaattag aagaagtcaa acgtaaatat gctgacccac gccgtacaga
     8881 attgatggtt ggtgaagttc tttcccttga agatgaggac ttgattgaag aaacggatgt
     8941 tttaatcacc ttgtcaaacc aaggctacat caagcgtttg gcacaggatg agtttcaagc
     9001 tcagaagcgt ggaggacgtg gggttcaagg aactggcgtc aaggatgatg attttgtacg
     9061 agaattagtc tctacaagca ctcatgatcg cttgctcttc ttcactaaca agggacgtgt
     9121 ctaccgtctc aaaggctatg aaatcccaga atatggtcgt actgcaaagg gacttccagt
     9181 ggtcaatttg cttaaattgg aagaaaacga ggcaattcaa accattatca atgtaactaa
     9241 ggaccaggag gcagatagct atctcttctt tgcaacccgc caaggtgttg taaaacggac
     9301 tagtgtgtca gaatttgcca atattcgcca gagcggtctg aaagctttga atttgaaaga
     9361 agacgatgaa ctcatcaatg ttttcttaac aaatggtcaa gcagacatta ttatggggac
     9421 taagttcggt tattctgtcc gtttcactga aacagatgtt cgtaatatgg gccgtacagc
     9481 aacaggtgtt cgtggtatca atttacgcga gggagaccag ttagttggcg ctactatgat
     9541 ttctgatgac caagaagtac tcgtattgac ggaaaaaggt tttggtaaac gtacgccagc
     9601 tagtgagtat ccaaccaaag gtcgtggtgg taagggtatc aagactctta aagttgctga
     9661 gaagaatggt tctctagcag gtttgacaac ggtatctggt gatgaagata ttatggttat
     9721 taccgatact ggcgttatta ttcgtacaag tgttgccaat atctctcaaa ctggtcgttc
     9781 aaccatgggt gtaaaagtga tgcgcttgaa tgatgaagcg aaaatcatga cctttgcctt
     9841 ggtagatgct gccgaaatta aagaagaaaa ggaataaata gtcatgtcaa aacgtgaaaa
     9901 caagaagaag cgtaaaggtt ctttttggcg caatctttta acagttgtat tgatactgat
     9961 ttccctagcg ttgatattca acacctctat ccgtaatttt attatcggct ggaatacgaa
    10021 taaataccag attagcaatg ttacgacaga ggatatcgaa aagaataaac aggctgaaac
    10081 aacatttgat ttcgatcagg ttcagtctat ttctacagag gctattttag cagctcagtg
    10141 ggatgcacaa cgcttacctg taattggtgg aattgcggtt cccgagcttg gtatcaacct
    10201 tcctattttt aaaggagtct tcaatacttc gctcatgtat ggagctggta ctatgaagga
    10261 aaaccaagag atggggaaag gaaattatgc gttggccagc catcatattt ttggtgtaac
    10321 cggtgcggca gatgttctct tttcaccgct tgatcgtgct aaaaacggca tgaaaatcta
    10381 tattactgac aagaccaatg tttacaccta cgttattgat agtgtggaaa ttgtttcgcc
    10441 tgaaagtgtc tatgtcattg atgatgtaga aggacgtaca gaagttacgt tggtaacatg
    10501 tacggactat aatgcaacgc aacgtatcat tgtaaaagga gttcttgaat caacaactcc
    10561 atataatgaa actgcaaaag acatcttaga ttccttcaat aagagttata atcagtatga
    10621 ttatggacaa taaaacatct atatattaag gataaagaag tggtataaga ctggggagat
    10681 aatctttggt tttatatggc ttcttttttg caagatttta cgaatagata ggtgaggagg
    10741 aaattatgta tcaaattgaa tttaaagaag aggccattct acctagagaa cgtttagtag
    10801 aagttggagc tgagcgtctc agtaatcagg aactactagc aatttttatt agaactggga
    10861 caaaaaaaga acctgtttct attctctcca ataaattatt gaatcgtttg gagagtttag
    10921 cggctctaag agaactatca attgaagaat tgcaaagttt gactggaatt gggcgcgtca
    10981 aggcgattga aattaaggct atgattgaac ttggaaaacg tatcaatcaa tcagagctac
    11041 tcttaaatga gagaattttg ggaagtgaga agttgggacg taagatgatt catgaaatcg
    11101 ggcataagaa gcaggagcat ctagttgcac tttatctcaa tacccagaac cagattatca
    11161 gtcaaaaaac gatttttatt gggagtgtta atcgtagcat tgcagaacca cgtgaaattt
    11221 tgcattacgc agtaaaatgt atggcaacat cgattatcat cgttcataac cacccgtcgg
    11281 gttcagtaca acctagtagg aatgatttgc tatttacgga gaatttaaaa gagtcctgcg
    11341 aaaagctagg actggtatta ttagatcatt taattgttgg aaacaaggat tactattctt
    11401 ttagagaaga aagtgagtta ttttaaagtt tattgacaat atagtggaag aggtcttttt
    11461 caatctcacg tttaccgtag agtagttcag gatgccattg aacccctaaa aatttagttg
    11521 ggtaggctga atgaactgct tcaataatct gttgattatc tgatagtgca atgatttcta
    11581 agtcaggggc taagtctttg atagcctgac ggtgaaatga gtttacactt ggatcggact
    11641 catatatgtc gtaaagtgga ctattttgag tcagttgaat cgtttgactg acttcttgtc
    11701 cgtctatgtc ttgccaatgt tcagaaattg attgatgaag gctaccacct tgagctacat
    11761 tgtagagctg tagacctcgg cagataccga agataggttt ctgatcttcc tgggcagccc
    11821 ttatgagggc caattcaaac tcgtcacgct ttggtagata attatcgctg tcaatagttc
    11881 tttcttcgtg atagtaactt ggctggacat tttgtcctcc tgttaggatg agtttgtcaa
    11941 taagatggat ataatatttt gccaaatctg gctctgtagc tggaaggatg agtgggagcc
    12001 caccagcatc ttcaatagct tgtacgaggc aagtctgggt ataagaaagc aggggttctg
    12061 tatgatcccc tgttttatat tcatttccag aaataccaat aactggtttt ttcattgctt
    12121 atccttttcg cataaagtag agtagtgtct gtaattcact agtcaaatca acatactgga
    12181 caacgacatc ttttgggaca gacaagttaa ctggtgaaaa gctcagaatt cccttgacac
    12241 cagcttccac aagaatatcg gtcacttctt gtgccttgac gctgggtacc gttagaatgg
    12301 ctgtctgaga gtttgcttcg ctgatacgtt ccttgatttc tgagattgca tggattggga
    12361 tattttcatc tgtcgttcca acagctggat tatcatctgc ttcaaaagcc atgactattt
    12421 tcattttatt tcgttcgtgg aagcgatagt gtagcaaggc ccgccccata ttcccaactc
    12481 caacaagcat aacattggtg atggaggtat catttagaat atccgcaaag aaatccatca
    12541 actctttgac gttgtagcca aagccacgac gcccaagctc tccaaaatag gaaaaatctc
    12601 ggcggacggt agctgaatcg attccgatag cttcggcaat ttcttttgaa ctagcttttt
    12661 caatatttcc tgcatagaaa cgtttaaaaa tgcgataata gagggataga cgtttggcag
    12721 tagcgcgtgg aatattagat tttttatcgt ttttcacttt agactccttt atttcgatag
    12781 aatacgcttt atcgattatt tatatattaa acagttcttt attctattct agtccaagtt
    12841 tgtgaaaaaa tcaacagatt gattttaaaa aaagattaaa caggaaactg tctaatctag
    12901 tgtttgtaaa tagcgataga gatctccgat tgtccctttg taatccagag cttgtccgtc
    12961 ttgtgtaatg ctggtaactg gataatagtc tgggagggtt aagcaaccgg caaaagccag
    13021 aatggctaca tctttattct caaatgtttg gatacgttct tgcttataag cgtcaagata
    13081 gtgaatttca atcatactaa gcctcttttg taaagatgtc acggtcaatc aagctatcca
    13141 tgaggaaata gaatttttct tggataacct tgttactttc tggcttaaaa atgtttacca
    13201 gatgaagacc agacttgtcg gtaatgttaa ttttaaaacc agttaggtct tgattgataa
    13261 taattttcaa gaggaatcct tggtttgaat ttggaatttc ttccagaaga cgtgtaagct
    13321 gatagtgacc tgctttggtt tgttcaaagg tgttatcacg gagtgtatat tttttgatag
    13381 cagggctaat gtgataagta aaattacaat cttttaaggt aactgattgt tggaatgcca
    13441 ttttaacctc caagtatttt ctttagttcg atgataagag tatctatctc ttcttttgta
    13501 ttgatttcag ataggctgat acgaatggat tctttcagac gatgggagtc ttttccatac
    13561 atagcttcta aaacatggct attttggaca acacctgccg tacatgcaga accgctagaa
    13621 acagcgatac ctgccaaatc tagttgcatg agtagttgtt cattaagttt accaggaaaa
    13681 ccgatattaa ggacatgagg gagatgaggt ccagcctgat tgagataata gtttaagcca
    13741 gacaatccct caataatatg ttgtcgcagt tcactgacat gcttatgatg catatctaag
    13801 gactcatatt gttctgttag ggcagtcgcc atagcagcaa tagcagggag attctcagta
    13861 cctgctcgat gttgctgttc ctgctttccg ccgtggatca aggaatcaaa tttatgaact
    13921 ttactataca ggaatcccgt cccctttgga ccatggaatt tatgggcaga ggccgcgagc
    13981 aagtcaattc cgtagtcaga gggagaaaat gcaatttttc caattgcttg gacagcatct
    14041 acatgaaaga cggcctgatg atcggctaga agctctccaa tttccttgat gggaagtagc
    14101 tgaccggtct cattgttagc aaacatgacg ctgactaaaa tagtatctga ccgaagggca
    14161 tcctgaattt gttgagcggt gattacttga ttgactggtt ggatataggt tacctcgaac
    14221 ccaaaccgat cctctagata ctgcatggca tggaggacag catggtgttc gatagccgta
    14281 gtaatcaggt gttttccttt ggattgttgc gcaagtgcat agccttgaat agctaaagta
    14341 tcagcttcgg agcctccaga tgtgaaaata atttgttcgg gagaggcgga gagaatctga
    14401 gcaatctctt gacgactttg tctaagacat tgattggctt tccgaccgct ttgatgaata
    14461 ctggaggggt ttccataatt ttcttgagcc acttccatca tccgttggag tgcagtagga
    14521 gatagagcag tggttgctgc attatctaaa taaatcaaag agttactcct agttttcttt
    14581 ttcaggacta gtaaatttga aaagtgggct gagtggctga tgttcttgga tgcggtggat
    14641 ggcatctgca atcaagtcac tagctgttag gaaggcgata tttttaggat gctgttcttt
    14701 gcttgcaaca gaatcggtaa ctaatatttc tttgattggt gcttcatcta agagttgggc
    14761 tgcagttcct gcaaagagac catggctggc aactgcataa atttcagtag caccaccttc
    14821 ttggacaatt tttgaagctt gtgagaaagt gcgaccagta ttgagaatat cgtccaccaa
    14881 aatagctttt ttaccagcaa catcacctat aatatagcct tcagaacgct cagaatcatc
    14941 ttgagcgtag tcgataatcg caatcggtgc atttagaaat tcagcgatat tacgcgcgcg
    15001 tttgatacca gaatttttag gactcacaat gacgacatct tcaccgcaga gtcctttttc
    15061 catgtagtag gctgcaaaaa gtggttctgt aaggagattg tctactggaa tatcaaagaa
    15121 accttgaatt tgtgaagcgt gcaaatcaag agtcaataca cggtcgacac cagctttaac
    15181 cagcatattt gcaactaatt tagctgtaat tggttcgcgt ggagaagcgg tacggtcttg
    15241 acgagcatag ccgaaataag ggatgaccgc tgtaatggtg ttggcactag cacgtttaca
    15301 agcatcgatc ataatcaata attcccacaa gtgattattg accggatagc ttgttgattg
    15361 gataatgtag acgtctacgc cacgtacaga ttcttcaatg ttaatttgaa tctcaccatc
    15421 agaaaactga cgagaagaca gctttccaag aggaattcca gcagaatcag caattttttc
    15481 agcaatatca cggttgctat tgagtgagaa taatttaatg ttatgttcac cgagtggttg
    15541 taccatttta aagtaactcc ttttacacac tgagctttta tgatgacata aaagtatttt
    15601 tacaatagat agttctattc tatcaaaaaa atgaaaaatt ttcagtagtg aaactaaaaa
    15661 atcaacctta tttggctgat tttttatagt tatttcatgt gggcagcagt tcgtgcgacc
    15721 ttactactag catatttgaa ttgaattgat ttcttcttca ggaattcatc aaaaagaatt
    15781 ttccctgcat ctgcatcggt cacttcgact tctaattcgt aatctttttg tcccacataa
    15841 tcattttcat cgagggccat aaggcctata gatgtctgtt tctcatagcg ttttgtcgtg
    15901 aggattcccc agacagcaag tttatcaagt ggaatttcgg ttgcagaaat aatgtcagaa
    15961 atttgtccgg ctggtagttg aaaattttcc agtaaatgat gagcagtttg gatgtctaga
    16021 acttggttat attcttgatt tccgacttct tgtggaattt ttaaggttag ttctgctgag
    16081 tccttaaatg tacgaatacg gagtgaaaag cggtgattct tcatatctag gtctggggta
    16141 tcaatgtagt ggtttgtttg aagaattggg ctcacatctg aaaagtcagt aagcaggcgt
    16201 ttgtattcgg atttagtcag taaggtttta tactcaattt caaggtggtt tttcatgcag
    16261 taaacccttt caatgtgtta taatagatta gtctttgtgt tattctaata caatttaaaa
    16321 gttttgacaa gaaaggggcc gtatggactt taactgggaa gaatttttag acccctatat
    16381 tcagacagtt ggtgaattga aaatcaaact acgggggatt cgcaagcagt atcgcaaggc
    16441 taatcggcat tctccaattg agtttgtcac aggacgggta aaaccgattg aatccattaa
    16501 agaaaagatg gccctgcgac atatcaaatt ggaaaatctt gctcaagata tgcaagatat
    16561 tgccggtctt cggattatgg ttcaatttgt ggacgacatt gaagaagtat tagctatttt
    16621 gcggaaacgc aaggatatgc aaattgtgca tgaacgggat tatatcaata atatgaaagc
    16681 ctctggttac cgttcatatc atgtggtgat tgagtatcct gtggatacta taaatggcaa
    16741 cgagacggtt ctggcagaaa tccagattcg aaccctttca atgaatttct gggctacaat
    16801 tgaacattct ctgaattata aatataaggg gaattttcca gaagaaatca agaaacgctt
    16861 ggaagttaca gcaaaaattg cctatgaatt agatgaggag atgcgaaaaa tccgcaacga
    16921 cattcaagaa gcgcaggcct tatttgatcc tgcctatcgc aaactgaatg acggtgtggg
    16981 caacagtgat gatacagatg aagaatacag gtagaaaaaa aatcgctctg ctcgctagtc
    17041 gaaatcctaa gagtgaagcg gtgtccaaag aattatggac aaagttaaaa gaagcaaatt
    17101 ttattttgac tcctaaaaat ccagatattg tcatttctat cggtggagat gggatgcttt
    17161 tatctgcttt tcacaaatat gaaaagttga ttgatcgtgt acgttttgta ggaattcaca
    17221 cgggtcattt ggggttttat acagattatc gcgattttga agtggacaag ctgattgaaa
    17281 atcttaagct tgatacaggt gctagagtat cgtatccgat tttaaatgtt aaggtcaaga
    17341 tgacagatgg tcgcattgtc gaggcgcgtg ccttaaatga ggcgacagta aaacgtcttt
    17401 ctaagaccat ggtcgcagat attattatta acaatgtgcc ctttgaacgc ttcagagggg
    17461 atggaatttc ggtttcaacg ccgacaggct caacagccta taacaagtca ttaggtggtg
    17521 ctgttttaca tccaacaatc gaggcattgc agattgcaga agtggcaagt ttgaacaatc
    17581 gtgtttaccg caccttgggt tcatccgttg ttgtccctaa aaaagacaag attgtgattg
    17641 aaccaaagca tagtgaccgt tactcgattg cggtagacaa taagactttt gtctatgata
    17701 gtattgaaag tatagagtat cagatagaca atagtaagat tcattttgtt gcaacaccga
    17761 gtcatactag tttttggaat cgggttaagg acgcctttat tggagaggtg gagtaatgcg
    17821 gtttgaattc attgctgacc agcatacgaa aataaagact ttccttaaaa aacacggtgt
    17881 ctctaaaggc ctattagcga agattaagta cactggtggt aatatttggg ttaatgacat
    17941 cgagcgcaat gcaacttact tgcttgatat tggagatagg gttacaattg acataccagc
    18001 tgaggaggat ttaacgggaa gtttgaaacc gatttccttt tcgttggata ttgtctatga
    18061 agatgatcat tttctggcga taaataagcc ggttggctac gcctccattc cttctgcctt
    18121 gcattcatcc acaatcgcaa attttgtaaa aggttatctt attgagcaga attatgagaa
    18181 taagcaggtt catattgtga ctcgtctgga tagggataca tcaggcgtta tgctgtttgc
    18241 caagcacggc tatgcccatg cacgactcga taagcagtta caggccaagc ttattcataa
    18301 acgttattat gctttggtga aggggaatgg gcagctagaa gagacagggg atattattgc
    18361 ccctatcggt cgtccagaag acagcatcat tacccgttgt gtgacaaaga atggaaaata
    18421 tgctcatact tcctatcgtg ttgtgcaatc gtggggagat attcatttgg tagatattca
    18481 actacatact gggcggactc atcagattcg tgttcatttt tctcacattg gatttccatt
    18541 gttaggagat gatatgtatg gtggaagttt ggaatgtggg atagaacgtc aagccttaca
    18601 ttgtcataat ttggccttcg acaatccttt ttcagccgaa aggattgatt tggaagcacc
    18661 gcttcctgag gattttcagg ctgtcatcaa tcagttaata agtaaataaa tttaaggagt
    18721 ttgttcatga aaatttttga gcaattagct acaaagctag agggtaaaaa agtacgtatc
    18781 gtattgccag aaggtgaaga accacgtatc ttgcaggcga caaaacgttt ggtaaatgag
    18841 tcggatgtag tacccgtctt gcttggaaac ccagatcgta ttaagattta ccttgacatt
    18901 gaagggatta cagaaggttt tgaaattatt gacccagctc attatgatag atatgatgag
    18961 atggtagctg ctttggtaga gcgccgtaaa ggtaaggtat cagaagagca ggcacatgag
    19021 ttgttgaaag atgttaacta ctttggtgtt atgttggtat atatgggcgt agtagaaggt
    19081 atggtatctg gtgcgattca ttcaaccgct tcaacagttc gtccagctct tcaaatcatt
    19141 aaaacagagc caggtgtatc gaaaacatca ggtgccttct tgatggtaaa aggtgaagag
    19201 cgttatattt ttggtgactg tgctatcaac attgatccag atgctcaaac cctggcagaa
    19261 atcgctatca actcagcacg tactgctaaa atgtttggta ttgatccaaa agttgcaatg
    19321 ctcagctatt caacaaaagg ctctggtgct ggtcctaaag tagataaggt tgttgaagct
    19381 acaaaaattg ctcaaaaatt gcgtccggag ttggatttgg acggtgaatt gcaatttgat
    19441 gctgcctttg ttcctaccac aggtaaatta aaagcaccag gttcgagtgt tgctggtcaa
    19501 gcgactgtat ttatcttccc aggtatctca gctggtaata ttggttataa aattgccgaa
    19561 cgtatgggag gatttgcagc ggtaggtcct gttttacaag gtttgaatca gcctgtaaac
    19621 gacttgtctc gtggttgtaa ccctgatgat gtttacaact tgaccttgat tactgcggtt
    19681 caggctttgg agcaccgtta atatgaaatt tttatcacga tattttaagg actatattaa
    19741 ggaatccata ttaggtccag tttttaaact attggaagct tgttttgagc ttttggtacc
    19801 attaattatc gcctatatcg ttgatacaat tattccaaat ggcagccagg gaaacctggt
    19861 tgctatgctt tttttactgg ttggtatagc atgtattgga attattgttt cactaatagc
    19921 gcaatattat tcagctaaag cagcggttgg agtgactaaa gagctgacga atgacttgta
    19981 tcagaaggtt ctttcccttc ccaagtctag ccgagatatt ctttcctcat ccagtttgct
    20041 gacacgattg accagtgaca ctttacaaat tcaaacgggt attaatactt ttcttcgttt
    20101 gtttttacgt gctccaattg tcgtatttgg ttcgctcatc atggcattct atattagccc
    20161 aagtctatct gcctattttc taggaatgat tatcctattg atttttatag tgacagtcat
    20221 ttctgttatg accagccgta tttatcaatc gatgcgaaaa gaattagatg gtttggtggg
    20281 gcaggtacgt gagacagtga ctggttggcg agtgattcgt gcatttggac aaagagagcg
    20341 agaaattaag gcttttcaag gcataaatca gatttataag aagcaacagt tgcaggctgg
    20401 tttttggtct agtcttttat caccattaac atttttagtg gtcaatggca ccttgctcat
    20461 tctcatctgg cagggaaata tagccatttc acacaatttg ttggaacagg ggatgttggt
    20521 cgctcttatc aactaccttc ttcaaatttt agtcgaattg gtcaagatga ttttggtcgt
    20581 gtctactctc aaccagacct atatttcagc gcaacgtatt caagaggttt ttgaccaaac
    20641 atctgaggat gtagagtcta gtttgccaag agtggttagt gaggataagg aaatcatctt
    20701 ttctgtgcgt catctttcct tttcttatcc aaaatctgct gaggagtccc tgtctgacat
    20761 tgcttttgac ttacgtaagg gacagtttat gggaattatc gggggaactg ggtcaggtaa
    20821 gtccacccta gtagatttat tgcaggcact ctattcagtg ccaacaaatc agctctctct
    20881 cttcattgat ggaaaaagtc ctaagaattt aaaagagtgg cggcagcaaa ttgccatcgt
    20941 tccgcaacag gctcagcttt ttgctggaac tattcgttct aatttatctt taggattgga
    21001 agaaatatct gatagtgacc tatggtctgc tttagaaatt gcacaggcta aatctttcat
    21061 agaggataaa ggtggtttgg atagccctgt cgaagccttt gggaagaatt tttctggtgg
    21121 acagcgtcaa cgtttgacca ttgcacgcgc tgttttacag aaagcaccga ttttaatctt
    21181 agatgatgcg acctctgctc tggattattt gacggagagt cgattattag ctgctattcg
    21241 ccaggaatta ccaggtcaga acttaatcat ggtgtcacaa agaaccaata gtttacggac
    21301 agctaatcag attttagtct tggaacaagg gcgtcaagtt ggacttggtc gccatgagga
    21361 cttgctgaga agctctgcta tttatcaaga aattcaccaa tcgcaacaac aaggagagga
    21421 ggatagctat gagacaatct agttttaagg aactggtcag attggtttta caccagcccc
    21481 ttcgaatgtc cttgatgttg gtgggaactt tggtgcaagt ccttctgaca gtttatctgc
    21541 ctatcttgat tggtcaggca gtcgatgcag tattgatagc aaatggtcag gtcttgctcg
    21601 gtatcttagg caaaatggtg atggttatct tgcttaatac gctgatgcaa tggtacttac
    21661 ctttggtaac caatcgcttg gtttatggaa tggtggccga cttgcgtgaa caggtttatg
    21721 ttaagctaca ccagatgccc ctatcttatc tggatcgtca atcagtcggt gatttggtgg
    21781 ctcgtttttc aagtgatagt gagcaattaa caaatggtct cttgatgatt ttcaatcaat
    21841 ttttcattgg tatcttgacc attttcctaa ccattttcac tatggctagg cttgacttga
    21901 ccatgatgtt ggttgttgtt gccctgactc cagtttctct gcttgtggca cgctatatcg
    21961 ctaagaaatc ctatggttat tatagacaac agactcaggc acgtgggaag caatctcagc
    22021 ttttggaaga gtccatcagt caattgacac tggttcaatc tttcaatgct caagagcaat
    22081 ttacgcaagg ttttcaagtt gtgaatgacc agtatgcgac ctattctcaa caggctatct
    22141 ttgcctcttc aacggtcaat ccaagtacgc ggtttatcaa tgctattatt tatgccttac
    22201 ttgcaggact tggagcgctg agaattatgg caggaaattt tacagtggga tccctgacaa
    22261 ccttcctcaa ttatgctagt cagtacagca agccttttaa tgatatttcc tcggtcctat
    22321 cggaattgca gagcgcctta gcttgtgcag acaggctgtt tgctatcttg gatctagata
    22381 gcattgacga tcaggctgag cggaaaattg attcagagga gttgaaggga gctatttcct
    22441 ttgataatgt gtctttctcc tatagccctg accgttctct gatagaacat ctggacattg
    22501 atgtcaaagc tggacaaaag gtagccattg ttggacctac tggtgctggt aaatccacca
    22561 tgatcaatct tctcatgcgt ttctacgatg tgacggctgg tcagattgtc ttagatgggg
    22621 ttccgattag ccagtacagt cgtgaggatc tccgcagaca gattgggatg gttttacagg
    22681 agacatggat caaatctggt accattcatg ataatattgc ctatggctat ccaaatgcca
    22741 cgcgggaatt ggtcattgag gcggctaagg cagctaatgc agacttcttt attcgtcagc
    22801 ttccacaggg ttacgatacg gttttggcag atggaggaga aggcttatcc cagggacaac
    22861 gtcagctttt gtctattgcg cgtgtctttg tcaagatacc taaaatcctg attttagatg
    22921 aggcgacttc ctctattgat acacggacag aaattttagt acaggaagca tttgccaaat
    22981 tgatggaagg acggaccagt tttattattg ctcatcgcct atcaaccatt caatcagctg
    23041 acttgatttt ggtcatggtg gatggaaaaa ttgttgaaca agggaatcat gaagcgttga
    23101 tggctgaaca aggcgtttat tatcaaatgc aaacaagtca gcagacagag gaggatgaaa
    23161 gtgttagata aattaaactt acaaccgatt acggttttag atgactatca agctacaatg
    23221 ctcaatgaga aagaggtgct actgactaca aaggtgacgg aaaaatctct caatccatac
    23281 ggtatggcac atggaggctt tcttttcaca ttggcagatt cagttgcagg tctgacaacg
    23341 gtagcaaggg gttcttattc tgtcacccta cagtccaata tccattatat gaaggcagct
    23401 aaacttggtg ataccttatc agtaataggc tcttgcacac atgatggaag tagaacaaag
    23461 gtcgttgaag tgaagataga aaaccaagat aaacagctac ttgcttcagc aagttttacc
    23521 atgtttgtaa caggaaaagt agaataatac tcaacgaaca tcaaaaacag acagtcttgg
    23581 ctagatttag agaaacaaat tcgtttgctt tatttcctat ctcccaagtt tccccaaacc
    23641 tttggagcta gtttgatttt gattataaac gatataaggg agttggcaaa agctggctcc
    23701 ctttctttgt gttatactag atgtatgtta aatttgaaag aatatggaat cgaaatgtgg
    23761 ccggaggaaa agattcaagc ttttcgcaag gcactcttag attggtatga tgccaataaa
    23821 cgtgatttgc cttggagacg gaccaaggat ccgtatgcta tatgggtttc tgaaatcatg
    23881 cttcaacaga caagagtaga cacggtcatt ccttattatg aacgttttct ctatcacttg
    23941 cctacgatta gtgatttagc acaagcacca gaggaggtca ttctcaaact ctgggaggga
    24001 ttgggctatt attcgcgcgt gcggaatatg caaaaggcgg ctcagcaaat ggtagaagat
    24061 tttgatgggc aatttccgac cacgcatgca gccatttcaa gcctaaaggg cattggtccc
    24121 tatactgctg gagcaatttc cagtattgct tttaatttgc cagaaccagc ggtagatggc
    24181 aatgtgatgc gggttctcag ccgcttgttt gaggttgatt atgacattgg tcttcctgcc
    24241 aatcgtaaga ttttccaagc gatgatggag ctattgattg atccagagcg accgggcgat
    24301 ttcaaccaag ccctgatgga tctggggtcg gatattgaat cgccagttaa tccacgtccc
    24361 caggacagcc cagtcaaagc ctttagcgca gcctacttaa acggtacaat ggataagtat
    24421 ccaatcaaag caccaaagaa aaagccgatt tccgtggcct accagggatt tctcatcaga
    24481 aataaagaca atcaattttt attggaaaaa aataatgaag caggtcttct atcaggtttt
    24541 tggtcttttc cgcttttgga aaaaggagca atcgttgaca aacaagtctc tctttttgaa
    24601 gttgcagaag aagttgttca gccagatatt cggcagagct ttacggaact ttatggtctg
    24661 gctgttgatt ggcaagagca agaatttggc atcgtccagc acatttttag tcaccgcaaa
    24721 tggcagatag aaatggtaga aggtgtggca gaaacactta accttccaga atcaaaagaa
    24781 ttgaaatggg tttctgtaga agattttcct acctacccat ttgctaagcc gcaacaaaaa
    24841 atgtgggaaa actttatcaa ggaaaaagaa aagcaaaaaa gttgactttg gagcacataa
    24901 ttatttgaaa gcgttttata atagtggtat aatctaattg aaaaaaggaa atagttagtt
    24961 aagatgttga acgccatctg aattgttgaa aggagttctt tagcgttcgt agaagtgtat
    25021 atactattag ccatctttct ctaataaaaa gagagggatg ctagtagggg aaaagtccgt
    25081 tatccctgtt ttatatctat ttgtgatatc cattgtcaaa tgcgtagcat aacttacaat
    25141 tagccttgct acccggttca atcagaagta ggctaagatt attcgtgtcg taactactat
    25201 gtgttcaaga tgttgtaact tttgaacata accttagaaa atcacaaaaa cctatagaga
    25261 aaatcacaaa aacctctagc gattttcatc ataataagca atctccacac tttagacaaa
    25321 tagtaagagg acaatcaaag acataagggt agcagaataa ttatttaatc attaacttgt
    25381 tgtcaaataa ctatctggta atggactttt ccaatttgac atataaaagg gaggctgtca
    25441 tagcctcctt ttactgtgct tttcagtttg ttttcagtag gaaaaaacgc cagctatacg
    25501 aacagacttt ccaaaactag atggatgaat gtagccaata taactagtga ttaactaggc
    25561 ttagaaatca atctggacta taaatatcta caacttgacc aataggtcga atatcgtctt
    25621 ctgggctaaa atagatatca tcatagtctg gatttaagga ttgtaggtag ttacctttga
    25681 atttcttaac aaaattttct ccgtttactg aaaaaattcc aattgtattt agaggaatat
    25741 gaggagctag gcgaatgaag agatagtctc catcctcgat atgcggagcc atagaatctc
    25801 ccacaacctg agcgattgta tcataagatt ggttatctgg aatctcatcg ttatagaatg
    25861 atacaagatt gttcatatct gtatcctgcc agtaacctgt accggcagaa accttaccag
    25921 gaacaggtaa ttcgatttgc tcccgatagt catccaagtg aagaatagaa gcagaaggag
    25981 taactgaggt agtttgcata gctgctaact gttcttgacc aaaagttaac cattgtgcat
    26041 ggaaatcacc ttttaattca ttgtccaagg tttgaacctc tggatgaata ggctgttgaa
    26101 agagtttaaa ctgggaagga gtaatcgtta aagcaatatc ctgattagaa tctagttgct
    26161 cgattagctc accaaccgat atagccatgc ccttagcgac tttttctagc gtatccatcg
    26221 ttggcaggag agctttttta gttttgggat gctggttctt ttccaagata gaaatataac
    26281 cttttgttaa accagataat tcagcgaatt tatccattga taatttattc ttgcttcggt
    26341 attcttttaa aatatcacct aaaatcatgg ttgtctcctt atctgtttaa ctaattatac
    26401 cattaaaaaa tattttttgc aaattttgtt taacgtgttt gacaaaaaat caaaacggtg
    26461 ttatgataat ctcacaaaaa gaaaaatagg agtcgcaaat gaaaaggatg acagagattt
    26521 cttggaatga tatttataaa gagtgggaaa cctatgctaa tcattttggt ttgacgactc
    26581 cgataaatac tgaaaaattg cgagatcaga aatcgaagga ttttggaaaa ggaagtctga
    26641 ttacgctgga cttattagcc gattacgata ctgattctga gaagaccgca gctatttggg
    26701 tagcttcatt ttgtagagat ttaatacaag attacgcata tttactaaat ggtagagcct
    26761 atcttacagt caatcagatt tattttcagg cactcaaaca atttcagtca gaagcggtaa
    26821 tatggtcaaa acctctcaca cgattacaac cgaagttatt tgtatcttat cgtttgttgg
    26881 aaaatcttga tttgagtcat tattcttgtg tagttgagtt agcaatgttg caggctagtc
    26941 tggttcggac acagatatta gaaaagtaat tatagtagga gaatgaaaat gtttaatttg
    27001 ttgaataaga aagctgaagt atcgaaagtt gcagagtatt ggaatgatac tttgatagaa
    27061 agaggaattt tgagcgcgga tgaattgctt gaaggaaaat gctggagatg taaaagttct
    27121 catggtgtag ctgtgtgtca gattgtatca agtaaatgga gcaaggatac gagcctggct
    27181 aatcagatgg tcctctgtct atcctgtcag catgaaaaac ctgatgtagc tgatacagaa
    27241 attgtgtggc aatggttaga agttgagaat aatgaacgtt actggactct acaaggtatg
    27301 gcagaatatg agaaaatgta taaaaaatca gtacttcaag agttatggga tatgggaatt
    27361 agagatggtg aagaagtcga gacgcttgta aataaagtaa ctagcctttc tcgtaagaat
    27421 gatattgttt taaatagagc aaccttagca ggattatttc gctgtgaaat cgaacaaatg
    27481 cgtcgaaagg catttctaaa ttggacagga atgtttaagc tagtcagtta accgatacag
    27541 ttgtaggaaa acatctcatg ctgattggag taacagataa ataaaaagcg catcagctta
    27601 gaatcttaaa gaaagaagtc taatgatgcg tttataggat tatatttcag ctaataaaaa
    27661 ttggagtgaa tgtttttgaa ttatagttca aaaacgttaa tcaaaacctt attataccaa
    27721 cgattatggc gcttttttgg tgccagttgg tgttaattat aatgataagt cgtttaagag
    27781 acttaaagca tcggcatctt gctggtgctt tttttctggt atcaattcta gataatactg
    27841 ttgtgttgtt aagatagagt tatgacctag acgacgagaa atatagtcta ggctaatatc
    27901 ttttgaaaag agaaatgagg catgcgtgtc acgaagtcca tgaaatgtcg tttttgttaa
    27961 tcccaactgt tttaacagct tttgaagttg actagcttgc ttgaatccat tccaatcaaa
    28021 gatatagcct tcttttgttt gtgcaagttt tgtcacagct tgataaacac cttcgttgat
    28081 ggaaatatca cgcttagaat gtttggtttt aagctgggta tcgtcattag ttggactaat
    28141 tgatcgaaga attttgatac catattcaaa aatatcttct tttttaattc ctaaaagttc
    28201 tccacgcctt gctcctgtct caagggcgag agcaacaaga acattaaatt catcctcagt
    28261 atgacttagg cagtattgtc tgagtttttt taattttgtg atagatagta tatttcgttt
    28321 aggttgttct tgtccttttg atttcaaaag atgaccaaag tcattactaa tcaaaccacg
    28381 agcatacgca tatttcaatg aaccacggat tttaagaaca agttctttta ctgttttttt
    28441 agagtgagtt tcagcgtatt ggtcgatttt cttttgcatg atgagatcgt caagatgttt
    28501 aagttgaata ccatcaaaaa ggtcatcaac tattacgaga gttcgtttat agttaataaa
    28561 ggtggcttcg cgaacgtcag ttttcttgac cgtatggacc caatttctat aaaaatcagg
    28621 aaatagggtg gagcgttcgg caatgttttt gccacgacct ttttcaagtt ccatttctaa
    28681 tgtccaaagc tcagcatctt ttctgttgct aaaggtttta gtttctcgtt tatattttcc
    28741 tttcttataa agtgatacag ttgcacggta agagttacca cgttttgtta ttgttgccat
    28801 tttatcagcc tttctataaa aaatgattga taaaatagac tagtcacata taggatatat
    28861 gaaaaatcta attttatcaa tcattatccg tcaatcgcag tggctttcaa taaatttaac
    28921 cagttttgac ttcaaatagc gctcttgttt tcccaccata aagcattgaa agtctgggtg
    28981 acttctgatg tacttatcaa atgatttagg atctattcca agtagttccg ctgcttgttg
    29041 tctatttaac agaagaggag aattattttg aggtaacata tagaattcct ttcattttct
    29101 agatacaagt attatgccac atgcgtaatg aattgaggct agatttttga aaattgttca
    29161 atgttaccta acgtttcaat aaaatataag cgtaggaacg aggaaattcc tctggtctat
    29221 tgtgtcccag agcctttgtt acaattttac aagcttttct gtcgagtgag atgtcaacta
    29281 actctttacg cagatggata acttctttac gatttctaat cttggaaatt tcgcgtgcta
    29341 cactgcgata aacacgctct gcatactctg caggatattt gtgtgacttt aatgctgttg
    29401 gaactttctt tccatcaaaa tcgtcgagga ttaaatcttt gggaacatga aagactttct
    29461 tttctcctgc tcgttggaaa atagcgacta accactcttc ctcctcttga ctagtggcca
    29521 tgattggaga ccagcgatct ctgcgttctt ttgtgtgatg cttatggccg gctaaattta
    29581 aatatagtga cttgaattag gaaagggata attttaagtt atagtgttaa taacccactc
    29641 ctaaaataac tttagagttc tcaaattgac aaacttagat atgtcctgtt tctatttcac
    29701 tcgactatac caacggccat cacggccgcg ttgcagagca tcgccagtga cgtggatcaa
    29761 ttcacttttg cgtaagcctg tcgcggtaac tactttatgc cagtagtcgt tatttttgtt
    29821 ggataaacga tagtctttat gcaatacacg attgttcata cgattcgcac gagtacgtgg
    29881 ttgtgtagcg atgaaattag ttgaggaaac tccgagaact ttggccaatg ctactttgta
    29941 ggtcgcttgt gtatatggac ttaaaccaat ctctatacaa tattgtaagt attgattgac
    30001 aagttctatc caaccttccg tatctttttc aacattacct aatgccatta actgttctgg
    30061 cgaaatgtta attgaaaccc attttgcaaa acaatgctat gaacctgaat agttatggag
    30121 tgtacgatga gtgtggatta actcaatgct ttcttttttc cttgcagtcg gttctaacga
    30181 accgatgttt tgcgaaccgc gcaaaacctg ctcgcgaaga ttgctagcat aataaagttg
    30241 taattatcat ttaaaataat gtttaaaatt ccaacatatt cttgtttatt tttgatataa
    30301 tgtaaaaaaa caacaaagga ttaaacatga ataaacgaga acgactagaa gaaattacac
    30361 gattggtaaa caaaaaaggc acagttcgaa tttctgagat tgttgaattg ctaaatgtta
    30421 ctgatatgac tgttcgacgt gattttattg aattggaaga gcaaggtgtc ttaacaaaaa
    30481 ttcacggcgg tgctagaagt aataaggctt ttcaatatcg ggaatattcc cattctgaga
    30541 aacacattca gaataaggaa gccaagcaag agatagcaga aagggctgcc caactgatag
    30601 aagatggaga cacggtgttc ttaggcccag gaacaacagt ggcctttctg gctgaggcca
    30661 ttaaaaatcc tcgcctaaca gtcatcacaa actgtatgcc tgtttttacc atcctatctc
    30721 aaaaaaagac cgaggagttt caagtctttc tcttgggggg agaatatcgc caagtgacag
    30781 aatcttttgt aggagaaatt accaatacaa gtttagaaaa aatgcgattc agcaagattt
    30841 tcttttcagg taacggactt aagggaactg atgtcatgac ctccacccta gctgaagcct
    30901 atacgcaaaa tattgccatt aaacattcgt tagaaaaata tctactgcta gatgcctcaa
    30961 aaattggaaa agatgatttt acttcttttt gtgatttgaa tgatgtaact gctctagtga
    31021 cagatatgaa tgcaaaggat gaaaattacc aattattaag taagcacatc gaaattatca
    31081 ctacaaaatc ataaagttat caaaaccaac agcaaaatgt tggttttttg tttttatacg
    31141 aaaaaaataa acaaaaatga aacaaaatat gttgactttg tggttgtttg gttgtataat
    31201 ttaaacataa aaagcgaaaa cgctttttct aagttttgca aaacaaagat tttctgccaa
    31261 atatggctac aactttctat ttttgttagg agataggtta tgacaatcat tatcggtgct
    31321 gatccagcgg gttcaaaact aaaagacatt attaaagatt atttgctaga aaaatcatat
    31381 gactttaaag atgttagtga tggaagtgat tttgttgata caactttggc agtagttgca
    31441 gaagttaatc aacaggaagg aaatcttggc attgtgattg atgcttatgg tgttggtcca
    31501 tttatgaccg caactaaagt caaaggcatg attgctgcag aagtttcaga cgaacgttct
    31561 gcctatatga caagaggaca caacaattcg cgtattatta caatcggtag tgagattgta
    31621 ggagaaggaa ttgctaaaaa tatcgttaaa ggatttgttg aaggtgagta tgatggcggc
    31681 cgtcaccaaa ttcgtgtcga tatgctaaat aaaatgtgct aattgttgta aacaaaggag
    31741 aataagagat gaaaattgca atcggttgtg accacattgt aacctatgaa aaaatcgctg
    31801 tggtagatta tttgaaaaat caaggatatg aagtgttgga ctttgggact tatgacaatg
    31861 ttcgtactca ttacccaatc tttggtaaaa aagttggtga agctgttgca agcggacaag
    31921 cagatttggg aatttgtatt tgtggaacag gtgttggaat caacaatgct gtaaacaagg
    31981 tacctggcgt tcgatcagcc ctggttcgtg atatgacctc tgcactctat gcaaaagaag
    32041 agttaaatgc caacgtcatt ggttttggag gaaagattac aggtgagttg ctcatgtgcg
    32101 acatcattga agccttcatt aaagcagaat acaaaccaac tgaagcaaac aaacgtttga
    32161 ttgaaaagat tgctgcagtt gaaacgctca atcaagagca ggctaatcca gagttcttta
    32221 cggaatttct tgataagtgg gagtgtggag aataccacga ctaggaggct cacatgattt
    32281 tgacaatcac tttaaatccg tccgttgata ttgcctatca actggatacc tttcatttgg
    32341 atacggtcaa tcgagtagaa aacgttcaaa aaacagctgg aggcaagggg ctcaatgtca
    32401 cacgagtttt gaaacaaatc ggtgaagatg ttgtagcaac aggctttatt ggcggtgaga
    32461 ttggaagtta tgtaaagaaa caactcactc gaaatgatgt taaaaactcc tttgtggaaa
    32521 ttgggagcga aacacgtaac tgtattgcgg ttcttcatga tggcaaacag acggagattt
    32581 tagaacaagg cccaactatt caagaacatg aagccttgaa ttttatcgaa caccttgaaa
    32641 tcgtcctgaa caatgtagat gtagttgtta tttcaggaag tttgcctaag ggacttgcta
    32701 gcaattatta tgttcagctt gtagagcttt gtaaaaaatt tggcatagct gttgttttgg
    32761 attgttctgg tgaggcgctg aaaaacgttt tagaaagcca gcagaagccg acagttatta
    32821 agccgaatac agaagagtta tcacaactga ttggtaaaga agttactgat gatattcaag
    32881 agttgaaatc agttttgtct ggtcaacttt tccaaggaat tgattggata gtcgtctcat
    32941 taggggcaca gggggctttt gccaagcaca atgacaagtt ctatcgtgtc agaattccaa
    33001 aaatcaaagt cgtcaatcca gtaggatcag gagattcaac tgttgcaggt attgcagcag
    33061 gtttggtaca cgctttacct gatgcagaat tactaaaaaa tgctaatgtt ttaggcatgt
    33121 taaatgccca ggaagaacag acgggttacg tcaatttaga aaatgcagaa tcgttgtatt
    33181 ctcaaatcga agtcgaagag gtataatatg gtagtaacag cagacaaaag aaaatacatg
    33241 gaaaaagtaa gcaatgaagc aggtattatt tcagctttag ctttcgacca acgtggagcc
    33301 ctgaaaaaaa tgatggcaaa acatcaggca gaagaaccta ctgtggaaca gatggaagaa
    33361 ctaaaaactc tagtttctga agaattaaca cagttttctt cctcaattct gttagatcct
    33421 gaatttggtt tgccagcatc acgggcccgt gacgagcagt gcggtttgct tttggcttat
    33481 gaaaaaactg gctatgatac cagctctact agtcgcttac cagattgcct agtagagtgg
    33541 tctgtgaaac gactaaaaga agaaggtgca gatgccatta aattcctact ctattatgat
    33601 gtggatggag attcatacgt caatcttcaa aaacaggcct atattgaacg attgggttca
    33661 gaatgtcagg ctgaaggttt accattcttc ttggaaattt tgagctatga tgaaacgatt
    33721 gaagacaatg ccagtgtgga atttgcaaaa gtcaaacctc gaaaagtaaa tgaggctatg
    33781 agagtttttt cggatgaacg atttggagtg gatgttctca aggtagaagt acctgtgaat
    33841 atgaattttg tagaaggctt tggaacagga gaagtcgtct atacaaaaga agaagcagct
    33901 gaatatttcc gtcaacaaga agcatcaact catttgcctt atatttatct aagtgcaggt
    33961 gtttctgcaa aactcttcca agatactcta gtgtttgcac atgaagcagg tgctaaattt
    34021 aacggtgttc tttgcggtcg tgcaacatgg gcaggtgttg tgccagtcta tattgaacaa
    34081 ggtgaagaag ctgcgcgtga atggttacgt actgttggtc gtgaaaatat tgagggactt
    34141 gatgcagtct tgtctcaaac agcaacttct tggctagaaa aataattgaa aaaataacca
    34201 ttttcttaaa agaaagggtt tacattttct gagaatatgc tataataatc tcatcagcaa
    34261 gaatagagtg gattgtaact aattcgatta ggcaagacta caaatggatt tgagagtagg
    34321 atattctcgg tttgtttgta gtcttttttt gcttaaaaat ataggaggga tatatgttta
    34381 ggattataca gtcactaaat aataacgctg ccctggtgaa aaatgaacat ggggaacagg
    34441 cagtcgtgat gggattaggt ataacctttc aaaagaagaa aggggattta attgttaagg
    34501 acaagataga aaatattttt tcgctaaaaa atgatgaagc taaagaaaat tttctaacct
    34561 tattaaaaga tataccctta gattttattt cggcaaccta cacggtgatt aatcatctgg
    34621 tagaaactta tcattaccct gtacaagaat atctatatgt gacattgaca gatcatatct
    34681 attgtgcata tcaggcggtt ttaaagaatg cttaccaaga aagtaagcta cccaatattt
    34741 cagccgaata tccattggaa tataaaatgg cgcgcgaagc cttagctatg tttcgtgaaa
    34801 agttgctaaa tgattttcca aatgatgaga ctggtaaaat tgcacttcac ttaatcaatg
    34861 caaagggtga aacaattcat cccacaagtg aagaacatga catcagtaag aaaattattg
    34921 ctgaggttga acaaattttg atagagaatg ggattaaacg ctctaaagaa aatagcaatt
    34981 tttatgatcg ctttatgatt catttgtcct attttctgaa ttacttagat agatcccatc
    35041 agtcaaatga atcgattgct agtttggaac agtacattaa gctccagaat ccaagagccc
    35101 atcaggttgg aagtcagatt tttgagatga ttacatcatt ggttgatgag ccagtaaatg
    35161 atagtgaaag gttctatatt gtactacata ttcaacggtt attgtaaatc atactcttcg
    35221 taaatccaat tcagacgttg ttgccttaac ttgatgagtg aaaagctcca gtggaggttt
    35281 tcagcctgtt ccattgagat gagaggggaa cagagttcta cctacgtttt cgtcgcctag
    35341 tctgaatggt atttccattg agtacataaa aaataggagg ttcatgttat gaacagagaa
    35401 gaaattactt tattaggttt tgagattgtt gcattcgctg gtgatgctcg ttctcgtttg
    35461 atggaggcac tggctgctgc tcaaaaaggt gattacgcaa aagcagaaga actagttgaa
    35521 gctgccaatg cttgtattgt tgaagcccac catgctcaga caagtttgtt gcagaaagaa
    35581 gcggctggtg aggatttagc ctttagtgtg acgctcatgc atggccaaga ccatctcatg
    35641 acgacattat tattgaaaga tatgatgagc catatgattg aactttacaa acgaggtgat
    35701 aagtaatgaa taaattgatt gaattcattg agaaagggaa gcctttcttt gaaaagattt
    35761 cgagaaaccc ttatttaagg gctatccgtg atggttttat cgctgccatg ccggttatct
    35821 tgttctcaac tctctttcta atggtagcat ttgtacctaa tatctttgga tttacttggt
    35881 ctgatgaagc agttgcggct atcatgaaac cttacggtta tacaatgggt attgtagctg
    35941 tcttagttgc aggaacgacc gcaaaatctt tgacagatgc gtttaaccgt caattgccaa
    36001 aaaccaatca gattaacttc atttcaacca tgattgcctc aatttcaggt ttcttattac
    36061 tggcttctga tggtattgaa ggtggatttg ccaatggtta catgggaact aagggacttt
    36121 tgacagcctt tctggcagct ttcattacgg ttaatatcta taaggtctgt gtgaaaaaca
    36181 atgttaccat tcgtatgcca gacgaagttc caccgaacgt atcccaggca tttaaagatg
    36241 tgattccata tgcattgtct atctttgtct tgtatggaat tgatcttgtg acacgtcaat
    36301 tccttggaac aaacgttgct gaggcgatcc tgaaattatt tgagcctcta tttacagccg
    36361 cagatggtta tgttggtatt acaattatct ttggtgccta tgctttgttc tggtttgtag
    36421 ggattcatgg tccatctatt gtggaaccag caattgcagc cattacttat gccaatattg
    36481 aaaccaactt ccagctttta caggcgggtc aacatgcgga caaaatcctg acttcaggta
    36541 ctcaaatgtt tatcgtgaca atgggtggta caggtgctac cttggttgtg ccattcatgt
    36601 ttatgtggtt gactaagtct aaacgaaata aagcaattgg acgtgcttca gttgttccaa
    36661 cattctttgg tgtaaacgaa ccgatcttgt tcggtgcacc acttgtactc aacccagtat
    36721 tttttgttcc attcatctta gctccaattg ctaacgtatg gattttcaaa ttctttgttg
    36781 atacgttaaa aatgaacagt ttcagcgtca acttagcatg gacaactcca ggaccattgg
    36841 ggattgtaat gggaacaaac tttgctccac ttgcctttgc actagcaatc ttgttggtat
    36901 ttgtagatgt acttatctat tatccattct tgaaagttta cgatgagcaa attcttgctg
    36961 aagaacaatc agggaaagtt gaaaatagct tgaaagagaa agtggcggct aactttaata
    37021 ctgcccaagc ggatgctatt cttgaaaaag ctgcagtcga caccgaaatt tctgaacaaa
    37081 ccaatgtttt ggtactttgt gcagggggtg gtacaagtgg attgcttgcc aacgctctaa
    37141 ctaaagctgc aaaagaatat ggtgttccag ttacagctac agcaggaagc tatggggcac
    37201 accgtgagat tttgccagag tatcaattag ttatccttgc acctcaagta gcatcaaact
    37261 acgatgacat taaacaagaa accgatgcat tgggcattaa acttgccaaa actgaggggg
    37321 ctcaatacat taaactcaca cgtgatggtc aaggtgctct tgactttgtc aaacaacagt
    37381 tttaatcaaa gggggtggga gtgaaatctt caactcctac ccctatattt atttttgata
    37441 gaagaaggta ggcatatggt taaaacatta ccgaaagatt ttatatttgg tggagcaact
    37501 gctgcatatc aagcagaggg tgctacacag acggatggaa aaggtcgtgt tgcgtgggac
    37561 aagtatctag aagataatta ctggtacact gcggaacctg cttctgattt ttataatcgt
    37621 tatccagttg atttagaact aagtgaacag tttggtgtga atggcattcg gatttcaatt
    37681 gcgtggtctc gtattttccc aacaggcttt ggagcagtga atccaaaggg agtagagtat
    37741 taccataaat tatttgcgga atgccataaa cgtcacgtag aaccatttgt aacgcttcac
    37801 cattttgata caccagaaac gctacattct aatggtgact ttctaaatcg tgataacatt
    37861 gagcactttg tcaattacgc agcgttttgc ttcaaagaat tccctgaagt taattactgg
    37921 acaaccttta acgaaatcgg tccaattggt gatggacagt atcttgtagg taagttccca
    37981 ccagggattc agtatgactt agctaaggta ttccaatctc accacaatat gatggtttca
    38041 catgccaagg cagttaagct ctacaaggat gctggttata gtggagaaat tggtgttgta
    38101 cacgcattgc caacgaaata tccttatgat ccaagcaacc ctgacgatgt acgtgcagcg
    38161 gaactagaag atattattca taataaattt atcctagatg caacatactt gggttactat
    38221 tctgaaaaaa cgcttgaagg tgttcgacat attctgaaag taaatggcgg ggaattagac
    38281 cttcgagatg aagacttcgc tgccttagat gccgcaaaag atttgaacga cttcttgggc
    38341 atcaattact atatgagtga ttggatgagg gctcatgatg gagaaactga gattatccat
    38401 aatggtaaag gggaaaaggg aagttctaag tatcaaatca aaggagtcgg tcgtagagag
    38461 tctccagttg atattccaaa aacggactgg gattggatta tctatccgca aggcctttat
    38521 gatcaaatca tgcgtgtgaa aaatgactat ccaaactata agaaaatcta catcactgaa
    38581 aacggcctag gctataaaga tgagtttgta gatggtacag tctatgacga tggtcgaatc
    38641 gactacgtga aaaagcatct agaagtgatt tcagatgcca tctcagatgg tgccaacgtt
    38701 aaaggttatt ttatctggtc cttgatggat gtattttctt ggtcaaatgg atacgagaaa
    38761 cgatatggat tattctatgt tgactttgag acccaagaac gttatccaaa gaaaagtgct
    38821 tattggtata aaaaagtagc agaaacacag gttattgaat aaaactaata caaggatgcc
    38881 tagctcaagt tagcatcctt gttttcatat aagggaggta gtttttatgt tcgaattaaa
    38941 aaatgagaac ttaacagtac aattttctga attaggtggg caaattattt ctattaaaga
    39001 caaggatggt atcgagtatc tttggcaagg agatccgacc tattggagcg gtcaagcacc
    39061 agttctattt ccgatttgtg gaagtttacg aaatgattgg gctatctatg aacctgcaga
    39121 aagaccgaca tttacaggca caattccaag gcatggactt gttcgaaaaa tgctgttcaa
    39181 aaatgtaagt agtaccgaaa actctttgga attttctatt tcatcaaacg aagaaaccgt
    39241 aaaaaattac ccttttgaat ttgaactttc cattaactac tcactacttg gcaatacaat
    39301 tcgaactgaa tatcgggtga aaaaccttga gggacataga aagctacctt actttattgg
    39361 aggtcaccca ggttttaatt gtcccttgtt ggatggtgag agttatgaag actattattt
    39421 agaatttgaa aaagtagaat cttgtacagt acctagaagt tttccagaaa ctggcttact
    39481 tgatctgcga gatcgccggc cattcttgga aaatcagaag accttggact tgtcctataa
    39541 actgtttgag catgatgcca tcacattgga tcaattagca tcacgaaagg taaccttgaa
    39601 atcaaaaaat catcagaaga aactttcgat tgcatttgat gattttccat atttagtgat
    39661 ttggtcaact acaaatcaga gtccctttat cgcattagaa ccatggagcg gactctctac
    39721 atcactggaa gaatctgaca tattcaatgc caaacgaaat attagttacg tcgctccaaa
    39781 agaggttgat aaaaaacatt ttgatattat tattgagtaa ataccatagt taagtaattt
    39841 aaatattcta cggaaatcac tcaaaaactc cactggctga atataagtca gtggggttta
    39901 ttgcttaatt taatattatg aaaaattaaa ttaagtgttg aaggggttca gctgtatttt
    39961 gagaaatctt tatcaatgaa ttaattacaa gatgataaag cgatacaaaa atcgtagtag
    40021 atgtattcct atggggtatg atatacttag tgagagagga cattacatat gcttgtaatc
    40081 tcgaaaatat ttttaagcag aatgaattat caatttgagt aaaagtaaga agatttatta
    40141 aataggtgtt agcttatgaa tgattgtgat ttcaaagatt ttgtaggaaa gaatttcgct
    40201 gatgaattac cagatgatga ctctaaaata atgattcatt ttcatactat gatacttgaa
    40261 cttggatcaa taattgctgc acttgaaata gtaaaaattg taaacgatga gtggcatgat
    40321 agagtagtgc aatcatctat tagatatgat atagtacgaa atgtaacata tgaatctttg
    40381 ttttatagag ttgtcttcgg tataactaaa atttttgatg tcagagaaaa aaatggtatt
    40441 tttaagattc tatctaagtt gagacatagt accaaagata gatctctttt atcaattttg
    40501 agtaccattc aagagggtat tgataaagaa caaaaaaata ttgatgaaat caaattgctt
    40561 cgcgacaaac acttggctca cttagataaa gagatggtct tttcaacaga aagattagac
    40621 attggtattc tatattatta ttttgaggcg atagaaatta agtccatata tacagcttgt
    40681 atcgagttat ataatacttt atatggagat aatcagcaac aagtcgaact tcctaaaaga
    40741 gaaataattt tgaaaagatt ttttcttgaa gaataactcg tattgattag tttttttgtc
    40801 ttcttatacc gataaattta taaaatactt gacctatcat tttgaatttg attaataaat
    40861 tatccatcta taagataaag taggtcaaat tagtttgacc tactgatgac tagtctattt
    40921 tatggtgtta attggtgtcg attttatcca aatcagagga ttttagtcca ttttcatgga
    40981 agtttcattt tcgtaaatgt tgatataacg ggatttgtaa ggggtgataa ttcttcgttt
    41041 tcaatagcga aattctctaa aaattaggga ggttattcga tgttagaaat aaaacgattc
    41101 tcctttctag aaaatcggta accgcaatgt tgacaacgat aataagtccg atcagcttca
    41161 tagagcattg caaacatagc tccctctatg ccattgattg catgaccaat cataccggct
    41221 ttacgagaat atcttttttg tgttggaacg taagtttgca gttttattga cttacatttt
    41281 ggacatttga gcgcttgttt agtgtccata ttattaggat ggcatctgcg atagatgcta
    41341 taagagatta ttagtactat gaggatagtc ggaccgatat attctattaa ggtattcata
    41401 atcttattgt aaatcgtgtc cttattttat tcaaggaaaa tgaatactat tttttctaga
    41461 atggctgatc ctatggctat agttgttaac tatacatatc tctaatattt aagtattagt
    41521 caagacggta aaaatgaggt agaatacaga aaaagaccaa aggagtacct ttatgactag
    41581 agaattttca tttgaaaccc ttcaactcca tgctggacaa gaagttgatt ctgcttcaaa
    41641 atcacgtgct gtacccatct atcaaaccac ttcctatgtt tttgaagatg ctcaagaagc
    41701 agaagattta tttgccttgc gtaaatcagg gaatatctat actcgtatca ctaatccgac
    41761 ggtctctact tttgaaaatc gtgtagcagc tttagagggt gggattggtg ccttggccac
    41821 ttcttcagga atggcagcca tcacatacac tattctagca ttagcgcatg ctggtgatca
    41881 cattgtggtg gcaacgacac tctatggtgg gacttttaac ctattcaaag aaacccttcc
    41941 tcgctatggt attacaacaa gctttgtaga tattgatgac tttgaagcgg tagaagctgc
    42001 gattaaagat aatacaaaac tggtatttat tgaaaccttg ggaaatcctg ttatcaatat
    42061 tcctgatctt gaaaaattgg cagaaattgc acacaaccac cacatcccgc ttgtttcaga
    42121 taataccttc gcaactccat atttgattaa tgtattttct catggtgttg atatctcagt
    42181 tcattctgca accaagttta tcggcgggca tggtacgacc attggcggtg tgattgtcga
    42241 tagcggcaag tttgattggg cggcatctgg taagtttccg caatttgttg aagaagatcc
    42301 aagctatcat aacattagtt atactcgtga tattggtgct gcagcattta ttgtagcagt
    42361 tcgtgtacaa ttgcttcgcg atacaggtgc tgccctttct ccattcaacg ccttcttgct
    42421 tttgcaaggg ttagaaacct tgtctctccg tgtagagcgt catgtatcta atgctgaaaa
    42481 aattgttgac tttttactta gccatcctca ggtagagtcg gtcaattatc catcacttcc
    42541 agatagtcct tataaggctt tggcggataa gtacctgcct aagggagttg gctctatttt
    42601 ctctttccaa gtaaaaggcg gagcagaaga agcccgtaag gttattgata gtttggaaat
    42661 cttttctaat ctagcaaacg ttgccgatgc caaatcacta gtagttcatc cagctacaac
    42721 cacgcatgct cagttagctc cggaagattt acttgctgct ggggtcacac caaatcaaat
    42781 ccgcctatct gttggtcttg aaaatatcaa tgatttgatt gaagatttgc aacttgctct
    42841 tgataaatta taggttgtga atcgaatagc atgacttcat tctttatgaa taaataaaag
    42901 gaaatttggc gtgtgtgtca ttttcctttt ttatatctgt tctagttctt ccagtccatt
    42961 ttcagttagt cgatagattc tttgacaaac ttctttcaaa aatcgtctgt cgtgtgatac
    43021 gcataccaaa ccacctggat aatcggcaaa tagttgacga atatatggct gagaagtagg
    43081 cgagaagttt cgactgggtt catctaataa gagaaaattg acttgttcaa gaaccatttt
    43141 taacaagagt aacttggctt tttgtccccc cgaaagttca cagatcttgt gatgaacttc
    43201 ttgtcgtgta aactgcagac tggctagatg cgttaagata agtcgttcct gctcacgatt
    43261 gccattttct aataaaaaat caagtggagt tttagactca tcaaggactt ctgtatagtg
    43321 ctggggcatg tagcccaagt ttatatctgc tcgttgcctg agtttctgat agatgatttt
    43381 tagaaagctg gatttaccta ttccattttg tccaatgatg ccaattttct cttgtccatt
    43441 taagttgaaa tggatatttt gaactaattg tcgccctcca atgttcaatt ggaagttttc
    43501 taagtgaagc acttgttttc tagctggtag tggtgaaata tctgagaaga agagggaaat
    43561 ggcatcttca tgaaaaggaa cttgtgtaag attttccttc attctttcat agcgtttttc
    43621 acgtgataag acattcttca ttttcttggc tatgagccgt cctagtgtgg catcatgggt
    43681 gttgagcaag gtatgacgaa cctgtgattt ttgacgtagg tgcttgttca tagctttgtc
    43741 aaattctttt tggtcattcc gagcttgctg gacctgcttc tgataagctt gatggcgctt
    43801 caatgcgtaa tcctggtagc ccagttcttc aaccttggtt tgagcaagtg ttttcttttt
    43861 aacagattct aggtgaatga tttttgtagc tgttctgcta agaaagtctt catcgtggga
    43921 aacaaataga atggttttag gactagtaat gatatagttt tcaagccaaa gtaaggtatc
    43981 taaatccaag tcattggacg gctcatccag aaaaataata tcagatggag ttgctagaga
    44041 tttgattaac tgaattttta atttttcgcc acctgacagg cttccaatca attgttgact
    44101 ggaaaatcgc tcgctatcaa actggagttg gtcagcatag agatagagta ggtggtaatc
    44161 aatgttactg cccatatctc cgaagaagta gtcgttcaag gttagctctg ccattttcaa
    44221 tggaagacct tggggaatgt agactggcga gtgaaaatat cggtgaatgc tgcctgatat
    44281 gagtaggtag tcggcgacaa gagttgaatc catcaaggtt agtaatagac tagatttgcc
    44341 atttccttct tccccgatga tggctatttt atcgccaggg ttgacaatga agtttaggtc
    44401 atgaaccaga tttctcaaat ctttttgatg gtcgagggtt aggtgttgag tggctagtag
    44461 cataaggcct cctttacaag aaaaaacaca ctacctattt agtagtgtgt cgaaatctgc
    44521 tcaaaaagac cctattcaag gaatagaggg aacagaaaaa tggacgcaag aaaactacta
    44581 aataagtata gaacttaaat tgagtttact tgttattgtc catttctcct tacctcgcat
    44641 actttattta ttttaatata gcatatcgat agaatcttgt caatcagcgt gctataatat
    44701 tcatagattt cgatagagat atatgttaaa atgaacttat tgtaaatgag agaggatccg
    44761 aaatggcaat cactggaatt gagcaagcag atattttaga aatagacaaa caagtccgtt
    44821 tacgtcggta tgatggtcag catgattttg cttttgaatg gcaccaagat ctagaattgg
    44881 tctggctgat tgatggtgat caagaacgtt atagtcttga cttgctcgat cgtatgtatg
    44941 attatttgtc taaaaatggc gaatgttact ttattgaaat ttttgaagac ggtcagttta
    45001 tcccaattgg tgatgtgacg ctgtttgcag atgattttgc cattgccatt ggagataagc
    45061 ggtattggga aaagggaatc gggactaagg tgttacatcg aatgatcgag cgtgcaaggg
    45121 atgtgggtct tgaggaaata cttgtcgaag aaatttatga ctggaatacg ggctcccata
    45181 aactatttga gaaatgtggc tttgaagctg ttgaaaagac aaagaaaggt tggtcctata
    45241 agatgatatt gtaaattcat ttggagatac caaaaaaacc ttgatgcaag tcaaggcttt
    45301 tcgtttagct tagacgttca agaccttatc aaggaagtct tgtaaacgtg gatgttgtgg
    45361 gttgtcaaag atttgctctg gtgtaccatc ttcaaggaac tcaccgccat cagtgaagat
    45421 aacgcgatta gcaaccttgc gggcaaagcc catctcgtgt gtgacgatta acatggtcat
    45481 accttgctca gccaagtctt tcataacgtt gagtacatcg ccaaccattt cagggtcaag
    45541 ggcagaagtt ggttcgtcaa agagcatgat gtctgggttc atagcgaggg cacgagcgat
    45601 ggcaacacgt tgcttctgac cacctgaaag gctgtctggc atagcgtcgc gtttgtctgc
    45661 caatccaact ttttccaata attccatgcc gaccttttca gcttcagact tgtccatcaa
    45721 tttgtgttcg attggcgcaa atgtgatatt gtctaggact gacatgtgtg ggaaaaggtt
    45781 aaagtgctgg aataccattc cgacatttga acggaaggca tcaacatctg ttttaggatc
    45841 ggttaagtca tatccatcga cagttacttg accacttgta atggtttcaa gtaagttcat
    45901 tgtacgaagg aaggtcgatt tacctgaacc agaaggaccg atgatacaaa caacatcgcc
    45961 ttcatagaac ttagcagtaa tacctttgag gacctcgttt ttaccataag acttgtgtaa
    46021 gtcatggacg ttgattttta attgagccat tatttgcctc ctttttcgag tttgcgtgct
    46081 aagcgagtca agagtgtgat aactaccaag taaatgatgg caagaattgc atacatacgg
    46141 aaggattggt agttacgtgc aataatgatt ttacctgctt ggaagagttc gaccaaacca
    46201 atcgcagaaa tgatagtggt atctttcaga gtaataacaa actggttgat aaagttaggc
    46261 aacataattt taccagcttg aggtaggata atcttacgca tggttgttcc gtaggaaata
    46321 cccaaactgc gagatgcttc catttgacca acaggaactg cctgaatacc gccacgaaca
    46381 atctcggcaa tataggcacc agagttgagg gatagggcga tcgtaccagc gacaaagtca
    46441 ttgattggag attgttgacc agtaatcgac tcgattaagt ttggaatacc ccagaagatg
    46501 aatgcagcga caatcatgag cggaatacca cgaacaacat ctacaaagac agatgaagta
    46561 acacggagtg ctttaactgg gctgacagca aacataccga agataatacc gatcacaatt
    46621 gcaatagcaa atgatagaag ggcaagtcca attgtgatac caagacctga gagtaattga
    46681 ccgtagttgt ttttcaaaag accaacaatc gttgtctcat caacagttga agtcgttgtg
    46741 cttgcttctt cagttgagtt gaaatactta ttaaggattt catcatactt gcctgattca
    46801 actagggcag ctaagccgtt gttaaacatt tcaattaatt ctgggttggc acctttttta
    46861 acggcaaatc cgtactcacc tgatttttcg ccaggaattg gtgttgcaaa gttgcgacct
    46921 tgttggatgg catatagaag aaccgcttcg tcatccataa gagcatcaat agaaccagag
    46981 tttaaactgt catacatact tgaagcttca tcgaaggctt ttagggtgta accatatttt
    47041 gccttgtttt cttctaagaa actatatgaa gctgtaccat ttttagctcc aacagttttc
    47101 ccttttaagt cttcgtaaga agcgatgtca ctaccatttt taacagctaa taggatgttt
    47161 gaagtatagt aggcgtttga gaagtcaaag atttccttac gagcatctgt gatagacata
    47221 ccggcaataa ctgcatcagc ttgtccagct tgaacagcat ttagtgcagc gtcgaaacca
    47281 gggttttgaa tagtaatggt aaatccttgt tgttcagcga ttgccttgat taattccata
    47341 tcgattccga catagttacc taattcatct tggtattcaa atggagcaaa agaagaatct
    47401 gccacaattg tgtagcttga tttgacaggt gttgctttag ctgatgcgtt tcctgttaag
    47461 cttaaacgag atgagtaatc tgtactttcg gcagaagtgg tagaagctcc taaccatttg
    47521 ttcatgattg tttcgtaggt gccatctttc ttcatctcag ctaaagcctt gttaaagtct
    47581 tcaacaagat attcatattg gctacctttt tttacagaga aaccaaatga accgattgct
    47641 tcgccttcga tgtcaatgct taggtcttga ccttgttgga tagcgtattg aataaccgct
    47701 tcgtcgtcca tgacagcatc aacagcacca gcagaaaggc tattatacat caaatcgcca
    47761 gtatcaaaag tttttacgtt gtatccgtac ttgtctttgt tttcttctag gaagttttgg
    47821 gctgcagtac cgtttttgac accgacagtc ttgcctttaa ggtccttata tgaagagatg
    47881 gtatttgctt ttgtggtagc gataacgatt ttggtgtcga agtaagggtc tgagaaagta
    47941 aatactttct tacgcgcttc ggtgatagtt gtacctgcca ttagggcgtc tgcagatcca
    48001 gcctgtacag cgtttacagc tgcatcaaat cctgggaagc tttgagtcat ggtccaacct
    48061 gagcgcttgg ctacttcgtt gatgatgtca acatctaatc ctttataaat ttgatctgag
    48121 tctttaaact cgaatggggc gtaagcattg tcaaatacga catcaatagt atcgtcagct
    48181 ttaacgccag taaaaataaa gaatactggc agaatgcttg ccaataacat gagtaatttt
    48241 ttcttcattt ccatactcct tctattataa aataactgtc ctagtatatc atattctgaa
    48301 aattaatgca aaattgaggt ttttataatg tcagaatttc tgacatacaa agtcattaaa
    48361 atgtgagaaa atttaatatt ttggacatag ttgtgaatgg tttagaatgt ttctccatta
    48421 gtcgaactta tgataaaata ggagtatgat caatcgaaat actgaaaacc aatttaaact
    48481 tgtatctaaa tactcaccgt ctggtgatca gccccaagcc attgaaacct tggttgataa
    48541 catcgagggg ggcgaaaaag cccagattct catgggggcg actggtacgg gcaagaccta
    48601 caccatgagt caggtcattg cccgtgtcaa taagcccact ctagtcatcg cccacaacaa
    48661 gactctagct ggtcagcttt acagcgagtt caaggaattc ttcccagaaa atgcggtcga
    48721 atacttcgta tcttactatg attactacca gccagaggcc tatgtaccgt ctagcgatac
    48781 ctatatcgag aaggacagtt cggtcaatga tgagattgac aaactccgtc actcagcgac
    48841 gtcagctctt ctcgaacgaa atgatgtcat cgttgtggct tcggtttcct gtatctacgg
    48901 tttgggatcg cccaaggaat attcagatag cgtggttagt ctgcgacccg gccaggagat
    48961 ttcccgagac cagttgctca attccttggt agatatccag tttgagcgca acgacatcga
    49021 cttccaacgg ggacgcttcc gtgtacgtgg agatgtggtg gagattttcc cagcttctcg
    49081 tgatgaacac gccttccgtg tggagttttt cggggatgaa attgaccgca ttcgtgagat
    49141 tgaaagcctg acaggtaagg ttttgggcga tgtggaccac ttggcgattt tccctgccac
    49201 ccacttcgtg accaacgatg accatatgga aacggctatt gccaagattc aggcggaact
    49261 ggaagagcag ctcaaggtct ttgaggcaga aggaaaactc ttagaagctc agcgattgaa
    49321 acaacggacc gactacgaca tcgagatgct tcgggaaata ggttacacca acggagttga
    49381 gaactattca cgacacatgg acgggcgaag cgagggcgag cctccgtaca cactgctgga
    49441 ctttttccct gaagactacc tgattatgat tgacgagagc cacatgacca tggggcagat
    49501 taaggggatg tacaatggtg accgctcacg caaggagatg ttggtcaact atggcttccg
    49561 cctcccgagt gcactggaca atcgtccgct gcgcagggaa gaatttgaga gccatgtcca
    49621 ccagattgtc tatgtatctg cgacgccggg tgactatgaa atggagcaga ccgataccgt
    49681 tgtcgagcag atcattcggc cgacagggct tctggatcca gaagtggaag tccgtccaac
    49741 catgggccaa atggatgacc tcttgggcga aatcaatgcc cgtgttgaga aaggtgagcg
    49801 gacctttatc actaccctga ccaagaaaat ggcagaggac ttgactgact acctgaaaga
    49861 aatgggcgtc aaggtcaagt atatgcactc ggatatcaag accttggagc gtacggagat
    49921 tattcgtgat ttgcgtttgg gcgtctttga tgtcttgata gggattaacc tcttgcgtga
    49981 agggattgac gtgccagaag tcagtctggt tgctatctta gacgcagaca aggaaggctt
    50041 cctccgtaat gagcgtggac tcatccagac aattggtcgt gcggcccgta actctgaagg
    50101 tcatgtcatt atgtatgcgg acaaggtcac cgagtccatg cgcaaggcta tggacgaaac
    50161 agcccgccgc cgtcaaatcc agatggctta taatgaagaa catggtatta tcccacaaac
    50221 tatcaagaag gaaatccgtg acctgattag cgtaaccaag gctgtcactc aggacaagga
    50281 agaagtggtg gacttcaatg ccctcaacaa agacgaacgc aaggctatga tcaagaaact
    50341 ggaaggtcaa atgcaggaag ctgcagaagt gcttgacttt gaactggcag cccagattcg
    50401 tgatatggtc atcgagttga agaatatgta gtaagagttg ctaagttcag tgatttaagt
    50461 aggatgaaat tacaagaggc ggcaggtaga aattgacctg ccacctttta taatacttaa
    50521 aatttttact tggggactta gggacaaaaa atttgtccct gtccctataa aaggttataa
    50581 tggtttctat actatttagg gaataggggg agtttttatg aaaaatattt tggtgaaaaa
    50641 cgacagcggt tcggttttcg gaaactgtcg attggacttg tctcggcagc tgtagcaagt
    50701 ttgttttttg cgtcatcggt cgcagcagca ccgtcagcta gtgctcagtc tatcaattat
    50761 tcctatgtga cagagcaaga attgacagat gcagaaaagg agttgattat tcgtgacttg
    50821 cctggcttag ctcaggaaac ggatgcaaat tattacctga tctatcgtcc agctactggc
    50881 acaacatcta ctccatcgac gagcacgtct caagttttgc caaatactgg ctctgtagaa
    50941 accggactat tggtggcggg tggagtgtct cttctgttat tggctgttag atttggtaaa
    51001 aaaggtaaga aggagttggc aggtgtcatc cttttgacag ctacgggagc aagcttcttc
    51061 ggtccaacta gctccgcatt gacgagtcaa attttggctc gatataacca tgcaatcgaa
    51121 atatctgccg gacaagcgtt accggcccca gctgagattg atggctacgt ttatgtagga
    51181 tatttgaagg atagcaaagc tattgaacaa actacttcgg aagaggaaaa aacagcggaa
    51241 ttcccagctt cagaaggaat ccgtacagaa actattgtca acaagacaga ggccattcca
    51301 ttcgaaattc aaaccgtaga aaatcctcaa ttatctgcgg ggacagagcg agtggtacaa
    51361 gaaggacagg atggggagcg tattgtaacg attaaacaag tccattcaaa aggtcaaatt
    51421 atttcggaag aagagatttc ctcgacggtt acaaaaactg ctgttccaaa gattgttgaa
    51481 gttggtacaa aacaagcaac cgatgatatt gttacagaag taccagatac agaaccaagt
    51541 tatgaaaact cgacgaattc tttaacagaa gaaacagtta ctcataccga agtctttgcc
    51601 tttgatgtgc aagaaatcta tgatgtaaac ttggcagaag gtagtcgtga agttgaacag
    51661 aagggacaag atggtgttcg gacaatcgag actaggaatt attatgccga tggtgtactg
    51721 attaaatccg aacaagtttc agatgtagtg acaaaagaac cagtaacaga agttgtaaga
    51781 gtaggcacga agacaacaga tgttattggt tctgaaacca ttgtaacaac agaagagctt
    51841 ccgtttgaaa cgacagtcac agaaacagaa gaactttatg ttggggaaga aaaattcatt
    51901 actgaaggta aggttggttc taaggaagtt accactactt atcagacaat caacggagtc
    51961 agtcaaccaa acccaacagt gactgagaaa gtccttgaag agccaacaac gaaagaggtt
    52021 ctcaaaggaa caaaaccaat agaaggtacg gaaatcgaaa ctaatcaagt tgaaattgcc
    52081 tttgaaacag agtatgttga tgacccgaca ttgttagaag gtaagaccaa agttgtaacg
    52141 gcgggtgtaa atggctctaa gacagttaca acaacttacc agactatcaa gggagttcgt
    52201 caggaaaatc ctactgtaac agaagaaatc acaaaacaac ctgttaagca agtcattgcg
    52261 cgtggtacaa aagttgagaa agttccacaa gtgattatca cagatttggt ggaaaatgac
    52321 gatgccaagt cagcgacaat cagctacaat cagctacaag ttgacagacg aaaccgctaa
    52381 tttccaacga gctgttgctc tcctctatga taatacaggt gccttggttc aagaacagac
    52441 cattacagat ccaaatggcc agttgacact tgaaaatctt gatttctaca cagattacac
    52501 tgttaagact aagattttct acacaatggc agagcaggaa caaagttcgg aacaagaagc
    52561 tattcttgaa agcatgcgca aatttgattt ggtctacaag aagattgaaa tcaaggatat
    52621 tgatgcggtg actgtttacc gtcgtaagaa tggtagctac atcggtcaag aattcttgga
    52681 agaactgcca gcatccacag atgaattgtt tatcaaggtg acttcagatc gcttcaagga
    52741 ggtataccta cctgtgtcaa gtattgaaga aactaccttg aatggcaagg cagccttcaa
    52801 actagtttca tcctttgatg aattggtaca ggataaggat gcccaatacg ttgccaatcg
    52861 tgaattctac attcctaaga tggcgactga tgcaaatacc tacacatcct tcaaagcttt
    52921 gctcgacgct atgaaggcaa atccaagtgg tacctttaaa ctaggagcgc atttggacgc
    52981 aagtgaagtt cctgttggag atgttgcatc gtatgtgacc aactttagcg ggactttgga
    53041 tggcttaaat gtcggctacg ccttttctat cagcaatttg aaagcaccat tgttctttaa
    53101 ccttggtggt aaagttcaaa acttggatat caagaatgcc agcctgaata caagctctaa
    53161 gaacccactt gcgacaattg cgattaatgc caatggagca actattacaa acgtagcagt
    53221 agaagcatct atcaaaggtc cacaaaacgt atcaggtctg gttcattctg caaccaactc
    53281 tactatcaag gatgtatcct tcaagggtag tattgaagta actgggactg atgcaagcct
    53341 cactggtggt atcttgggta acggtacgat ggcaagtgtt ggaaatgcca aggttgatgc
    53401 gaccattacc cttccaggta cagagaatca agtagctggt ggtatcgtcg gtcgtaccat
    53461 gcttgtctac gatgtaccag gaagtgtcta tcattcgtac gcaacaggtt caatcgtgac
    53521 aaatggtaca gaggcaacca tcggtggaat tgctggttcc aaccaagtga caggtgccta
    53581 tgctccacat agcggtaatg tcaacaacgt tgtcagcgat atgactggta cgaaaagcat
    53641 tatcggtcaa cccgcaaatc caactggtaa gattaaagac ggtttcacta caacatctga
    53701 tagcttgacc aacgtcactg ttatcactga tgaagaagcg caagcaaaag tagaagctat
    53761 ggctattcaa gcgacaattg atgattctgt accgcttaat ctcaatcatt attcagtaga
    53821 ctacttgacc ttggataagg cacaggctga ccatgaaact gcctactaca acatggagaa
    53881 aatcttgcca ttctacaaca aggaacttct tgtctattat ggaaacaaga ttgcgacaga
    53941 cgataagctc aacaaggtcc gtttgctgga tgttgtacca atgaaggaca atgctgtagt
    54001 tgctgacgtc tacgctgaga aggctaatat caataagatt atgcttcact atgctgatgg
    54061 cactgtggac tacaagacag tttcttatct agaagacttc aagaataatc atgtggtcga
    54121 gtataccatt tcaggtacgg acttgattta cacgccagaa tcattcttga atgacagaag
    54181 tgcccttgtc aatgacttgg taagcagcct ttcttctgtt gtcctcgact cggatgccat
    54241 gaaggctgtt atcaattatc caacaaaatt aaatgcggat actcagactg gcacagctaa
    54301 agacttctac tttggtgaca gctataacca agtaatggct aacctagaaa gcaacgttcg
    54361 taagattttg gttgctagtc taaatggtca aggtcaggct tctgaagact acatcaaaga
    54421 gaaaatcacc aataacaaag cagcctttgt gctcggtttg acttacttga accgttggta
    54481 tgacatcaac ttcggagaga tgaataccaa agacttgacc atctttgaac ctgacttctt
    54541 cggaaatgat gtagcatctg cccttgatat gattcttgca attggtaatg gtggctatga
    54601 tgttcttcgt gcccacaata acgtgaccac ttttgcatcc atcattggta aacaaaataa
    54661 tcagaccaag cttttcgata tgctggaaga ttatcgtcag ctcttcttgc cagaaatgac
    54721 caacaatgaa tggttcaagc aaacaaccaa ggcatatgtt gttgaaggta agtccttgat
    54781 tccagaagta gctgcaaagc aggaaacgac agatacttat agcaagtaca atgttggagc
    54841 ttatagcaag attgtgaatg atacggtatc taacccagct tggaagtaca atcacatgct
    54901 cttgccactt ttgaccttgc cacaagagaa tatctttatc atcactaaca tgaataccat
    54961 cgcgattggt tcttatgaac actacgtaga tgattattcg acagtggaaa atcgtgataa
    55021 ggttcgtcag atggttgatt tggcggcaga acgtcagcgt gataatgcag acttctggta
    55081 taagattttg gatgaaacca accgtgacaa gctattcaga tctgtcctca ataacgaagg
    55141 ttatgtgatg tatggtaaag atggtacgaa gtcttatcgc aacttgacag ctgatgttga
    55201 tgctatccaa gatttctacg gtccgatcaa caagtggtat cgtgagcatc cgtctattaa
    55261 gactgccttt gcggatggaa gtgagaccta ctatatcact tacgatatgt tgacggatta
    55321 cggtacagct ctttataccc acgaaatggt tcacaaccaa gatggtgata tttatctgaa
    55381 aggctatggc cgccgtattg gtcaaggtat ggaagtttac gcccaaggtc ttctacaaaa
    55441 tgtcttcaat gttactgaga tgaaccttgg attcaacgct gtctataata gcgatgatgc
    55501 caaccgtgtc catgtcggag acccagttgc acgtttcaat agcgaagctg atttcaatga
    55561 gtattacctt aaccaatttg atgtacttta cttgctggat tacctagaag gtacaagcat
    55621 cttggctcaa tcagatgcta acaagaaagc ttggttgcgt aatattgaaa actactatgt
    55681 ccaaaataat ggtgttgata cccaagctgg aaactctgcg cgtgcattga cagatgccga
    55741 agtggcaagc ttgaagtcct tcaatgattt gattgatcag agcattattg ttcaacgcca
    55801 atatgtcaac aatccaacta acacaagcaa gaagtgggat agaaacagtt atgtcagcgt
    55861 tccaatgttt gcagctaact tctcagccct ttcaaactca aacggttctc caggcgacat
    55921 catgttccgc cgtatggcct ttgaattgat tgcagctaaa ggctacacag atggttttgt
    55981 gccgtatgct tccggacaat tatccgacct agccatggaa aaaggttcta agatttacga
    56041 tacatggact aaaaaagatg ttggtttgat tacagacaat cttgtcttag aatatgtctt
    56101 ccaaggtcaa tatacttcat gggctgagtt caagaaagcc atgtttactg agcgtttgga
    56161 aaaagcagca gcaggccaac tcaagccgtt taccatgcag tatgaacttg atgttgctga
    56221 ttcaaccaag gaagtaacta tcacaagctt tgagcagttg caaaacttga tgaaagaggc
    56281 catggaagca gacatccaag caaatagttt aaacttgaac aacagtcgtg ttcatgcact
    56341 caaagtgaaa gtttatcaag ccttgatgaa ctctacaaat gacttcagaa catcgatttt
    56401 taacccataa tca
//
LOCUS       DASFRC010000002        35784 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.002, whole genome shotgun sequence.
ACCESSION   DASFRC010000002 DASFRC010000000
VERSION     DASFRC010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 35784)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35784)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35784
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.002"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            86..2575
                     /locus_tag="U1087_000052"
     CDS             86..2575
                     /locus_tag="U1087_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2',3'-cyclic-nucleotide
                     2'-phosphodiesterase/3'-nucleotidase"
                     /protein_id="HEM4754584.1"
                     /translation="MKFRFSKCALTLSLALLASTNNALVSAEETSTDTPVLKTETEIS
                     SSVATSQAEATTGEVATPTTTETTAGEAVTPTTETTDQSVTPVTEEAAPVVETSNTPV
                     NDTTASPVTATRAAATETTTPVEGQSVDVRILATTDLHTNLVNYDYYQDKPVETLGLA
                     KTAVLIEEAKKENPNVVLVDNGDTIQGTPLGNYKSIVDPIEEGEQHPMYAALETLGFD
                     VGTLGNHEFNYGLAYLEKVIRTANMPLVNANVLDPTTKDFLYTPYTIVKKTFTDTEGK
                     KVTLNVGVTGIVPPQILNWDKAYLEGKVIVRDAVEAVRDIIPTMRENGADIVLVLSHS
                     GIGDDQYEVGEENVGYQIASLSGVDAVITGHSHAEFPGTAEKPSFYAKYSGVDDTNGK
                     INGTPVTMAGKYGEHLGVIDLNLVFKDGKWTTTSSKAAIRKIDTKSSVADGRIIDLAK
                     EAHNETINYVRQQVGETTAPINSFFALVQDDPSVQIVNNAQIWYAKQQLAGTSEANLP
                     ILSAAAPFKAGTRGDASAYTDIPAGPIAIKNVADLYLYDNVVAILKVNGAQLKEWLEM
                     SAGQFNQVDPSSTEPQNLVNTDFRTYNFDVIDGVTYQYDITQPNKYDRNGKVVNETAS
                     RVRNLQYNGQDVTADQEFIVVTNNYRANGTFPGVREASVNYLLNLENRQAIINYIIAE
                     KVINPTADNNWTFTDSIKGLDLRFLTADRAKELVANQEGLVYLQASAENEGFGEFKFV
                     YTEPKVATPDEQQSDQGNTGQDIVLESGQRITLPAVNPPAPAPQHKLASPHSQASTKT
                     LPATGEATSMLSLLGLTLIGFVGAWTKKKEH"
     gene            complement(2696..3253)
                     /locus_tag="U1087_000053"
     CDS             complement(2696..3253)
                     /locus_tag="U1087_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754585.1"
                     /translation="MKRLSTPIFAALGFFLIVFVALNQFGRVPGTSYQIISELVLYNQ
                     ATEQTYEFENHEVRKAFIRQLSSTSSRGFQASDSRTSLETTYHETIMSENLISSIYGG
                     EEGRIMEFSRPRKSTLGNLVFASESVSYLVFARKYGNIRLETTILCQEFRVEQRLANQ
                     SNWVDLGTYTVKSPKETRYVPIYWE"
     gene            complement(3494..4209)
                     /locus_tag="U1087_000054"
                     /pseudo
     CDS             complement(3494..4209)
                     /locus_tag="U1087_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636729.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF554 domain-containing protein"
     gene            complement(4219..5481)
                     /locus_tag="U1087_000055"
     CDS             complement(4219..5481)
                     /locus_tag="U1087_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754586.1"
                     /translation="MSELEQKEHRELIVSDDCFALIQKMSELDSSAYQRYEITNPNIL
                     AHVEKIVQPALKHHLKKAGQPNIPKGLFKVDLPIGDLHKIKGETDKYRAFVKGAEGKF
                     KAHAILTPAQVEIAKGAKAAAAVSGAMQVAAMVVGQYYMAEINGQLDSMKETLNDVKD
                     FQVREFKGTVRALIVNISQLSKFSADYVENAELARLKLMECANFRAEVTKLLEQVNLA
                     IEESITKGKGLSFEKYEQLIDKLSTNLFYQQTLLRLLAELSKLDLVFSQGVASEDSSY
                     YVYEYYLNNCNSLGEKIANWHKDKIKFFQIDTKRNRRTQEGPMKVVADIAKELDKNAH
                     VAAGVGFLGGLVGAAAGFGIGKAAGELNKAIRYIDVRKRTVKLISEQETVSYQSSKRL
                     SVNNYGENVKLLVEDGKVYYLLPDDSES"
     gene            complement(5495..6241)
                     /locus_tag="U1087_000056"
     CDS             complement(5495..6241)
                     /locus_tag="U1087_000056"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HEM4754587.1"
                     /translation="MQQYFINGRAPQGVFQISDKDTAKHMFSVMRLQADEQIVLVFDD
                     GIKRLARVVDSQNQSVEIIEELSDNVELPVSVTIAMGFPKGDKLEFVAQKATELGMAA
                     LWAFPADWSVVKWDGKKLGKKAEKLEKIAQGAAEQSKRNRIPAVRLFEKKVDFLAQLA
                     GFDQIILAYEEAAKEGEQANLVKILSGLEIGQSVLVIVGPEGGVSPEEVAAFEGAGAV
                     KTGLGPRILRAETAPLYALSAISYATELLR"
     gene            complement(6243..7196)
                     /locus_tag="U1087_000057"
     CDS             complement(6243..7196)
                     /locus_tag="U1087_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001099287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HEM4754588.1"
                     /translation="MNSWQELTIHVHRDAEEAVSNLMIETGSQGVAISDSADYVGQED
                     RFGELYPEVEQSDMIVITAYYPDTVDIEEVKADLATRLADLTGFGLETGQVSLESQEL
                     AEEDWADNWKKYYEPARISHDLTIVPSWTDYEATAGEKIIRLDPGMAFGTGTHPTTKM
                     SLFALSQVLRGGETVIDVGTGSGVLSIASSLLGAKEIYAYDLDEVAVRVAQENIDLNA
                     NTSNIHVAAGDLLRGVDIKAEVIVANILADILIHLTEDAYRLVKDEGYLIMSGIIADK
                     WDMVRASAEAAGFFLETHMIQGEWNCCVFKKTADRSGVIGG"
     gene            complement(7792..8145)
                     /locus_tag="U1087_000058"
     CDS             complement(7792..8145)
                     /locus_tag="U1087_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HEM4754589.1"
                     /translation="MVHEMLLAPKPFEMMKSGQKTIELRLYDEKRKHIQIGDRIRFYC
                     TENQTQTIEVQVLDLHIFDNFAQLYKELDLLSCGYTQSSIRGAKPEDMEDYYSREQLE
                     QYGAVGIELRVIDSI"
     gene            complement(8147..8617)
                     /locus_tag="U1087_000059"
     CDS             complement(8147..8617)
                     /locus_tag="U1087_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005591596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3013 family protein"
                     /protein_id="HEM4754590.1"
                     /translation="MAKHGFLDVLEAALDKHFTYDYELNWDKKNHAVELAFILEAQNV
                     AGIETVDDEGNASSEDIFLEEYVLFYNQDKSRFDEEDYLVALPFDAKKGFSAEFLTYF
                     AGFLKDTADQGLDDLMDFLVDPEAQDFAISWDGEAFEKGRADLLEGEFYPYPRY"
     gene            8691..9977
                     /locus_tag="U1087_000060"
     CDS             8691..9977
                     /locus_tag="U1087_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HEM4754591.1"
                     /translation="MPANLALRMRPKSIDEVIGQEHLVGPGKIIRRMIDANMLSSMIL
                     YGPPGIGKTSIASAIAGTTKYAFRTFNATTDNQKRLQEIAEEAKFSGGLVLMLDEIHR
                     LNKTKQDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELQPLKTSHIRQALE
                     LALTDSERGFDFPVTIEPEALDFLANATNGDLRAAYNSLELAVLSTKESDDGSRHIDL
                     DAVENSLQKSYISMDKNGDAHYDILSALQKSIRGSDVNASLHYAARLIEAEDLPSLAR
                     RLTVIAYEDIGLANPEAQIHTVTALEAAQKIGFPEARILIANVVIDLALSPKSNSAYL
                     AMDAALADLRKNGHLPIPNHLRDGHYAGSKELGNAIGYQYPHAYPEKWVDQQYLPDKL
                     LAADYFTANDTGKYERALGMTQEKIKNLKKNRRQNP"
     gene            10079..10272
                     /gene="ssrS"
                     /locus_tag="U1087_000061"
     ncRNA           10079..10272
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="U1087_000061"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            10281..10353
                     /locus_tag="U1087_000062"
     tRNA            10281..10353
                     /locus_tag="U1087_000062"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10314..10316,aa:Lys,seq:ctt)
     gene            complement(10458..11015)
                     /gene="nrdG"
                     /locus_tag="U1087_000063"
     CDS             complement(10458..11015)
                     /gene="nrdG"
                     /locus_tag="U1087_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014639014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase
                     activating protein"
                     /protein_id="HEM4754592.1"
                     /translation="MNNPKPQEWKSEELSQGRIMDYKAFNFVDGEGVRCSLYVSGCLF
                     HCEGCYNVATWSFKAGIPYTKELEDRILADLGQPYVQGLTLLGGEPFLNTGTVLPLVK
                     RIRKELPEKDIWSWTGYTWEEMMLETPDKLELLSYLDILVDGRYDRTKRNLMLQFRGS
                     SNQRIIDVQKSLQEKRVVLWDKLKK"
     gene            complement(11202..11696)
                     /locus_tag="U1087_000064"
     CDS             complement(11202..11696)
                     /locus_tag="U1087_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM4754593.1"
                     /translation="MELRRPTIADKETILEMLAEFEAAGSAMDGGFISKDVDFEEWIF
                     RNKDYEAGLNLPDGFVPSIQYVSFDQTGRALGFLSLRLRLNDFLLNKGGHIGYSIRPT
                     ERGKGYAKDQLRLGLQEAATKNISKVLVTCSTDNQASRRTIVACGGVLEDVRDGVERY
                     WIED"
     gene            complement(11698..13044)
                     /locus_tag="U1087_000065"
     CDS             complement(11698..13044)
                     /locus_tag="U1087_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase C-terminal domain-containing
                     protein"
                     /protein_id="HEM4754594.1"
                     /translation="MDYTDISILHTNDMHSYMENFPKKAQLIANIRARNEKEGVPTFV
                     FDSGDLFSGNIFFNMYRGVKEIELMNQIGCQAMTLGNHEFDHGDELISRLDDYAQFPI
                     VSSNLRYQDVEVADELVPLEDVLEFDMNGKNLYVFGLTTLETQEVASPSENVIFEDHK
                     QALRRLVDQIVSQNPSAHLVLLSHLGYDEDVHLAKDFPELNVILGGHTHTILKQPSQI
                     GGVSICQAGQYGRFVGHLSLRCFADGRHEVQAYDLIEVEKLTQEDRAVKAIIDQMKSE
                     RDAAFSKPIAILPQALDGERDSIRQGLSTLAPVICQALFEQASQLGLQADGAVINGFG
                     IRASLSAGPIFYSDLVKVLPFSKRVLLVRIKGRDLLSSLQTGLHPQMWGIVQSGEDLL
                     VNGRAVESDKDYQIVTNSFVWSGKDNYDDFHKAEIVQDLGLDIDIISEFFKRQYGG"
     gene            complement(13273..15444)
                     /gene="nrdD"
                     /locus_tag="U1087_000066"
     CDS             complement(13273..15444)
                     /gene="nrdD"
                     /locus_tag="U1087_000066"
                     /EC_number="1.17.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HEM4754595.1"
                     /translation="MNVQENVLPSIELLVLKRDGRTVSFDQDKIFSALRRANQELEHP
                     VSEAGLKIVLEAVLAEIGRRFEKDVQIYEIQTVVEQELLKAHLYDLAELYIQYRTRRD
                     FRRHQATDINFEIHKLLSKDQSVVNENANKDADVFNTQRDLTAGIVGKSIGLKLLPAH
                     VANAHQKGDIHYHDLDYSPYTPMTNCCLIDFKGMLAQGFKIGNADVESPKSIQTATAQ
                     ISQIIANVASSQYGGCSADRIDEVLAPYAELNYQKHLKDAKDWVLPDKQEEYARAKTQ
                     KDIYDAMQSLEYEINTLFTSNGQTPFTSLGFGLGTSWFEREIQKAILNIRIKGLGREG
                     RTAIFPKLIFTVKRGLNLEPDSPNYDIKQLAIECATKRMYPDMLSYDKIVELTGSFKV
                     PMGCRSFLQGWKDENGQDVTSGRMNLGVVTVNLPRIAMESAGDKDKFWEIFVERMAIA
                     KDALVYRVERVKEATPANAPILYQYGAFGKRLAKTDAVDEVFKNRRATVSLGYIGLYE
                     VATVFYGGEWETNPEAKDFTVDIIKKMKALVEDWSDEYGYHFSVYSTPSESLTDRFCR
                     MDTEKFGIVKDITDKEYYTNSFHYDVRKNPTPFEKLDFEKIYPAVGASGGFIHYCEYP
                     VLQQNPKALEAVWDYAYDRVGYLGTNTPIDHCYACDFEGDFEPTERGFKCPNCGNSDP
                     KSVDVVKRTCGYLGNPQARPMVKGRHKEISARVKHMNGSSL"
     gene            complement(15750..16493)
                     /locus_tag="U1087_000067"
     CDS             complement(15750..16493)
                     /locus_tag="U1087_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM4754596.1"
                     /translation="MIKIRNLVKEFSGQKVLDGIDMDIEKGQVIALVGPSGAGKSTIL
                     RSLNYLEQADAGSIEIDGFTVDFTNISKEEILTLRRKLAMVFQQFNLFERKTALDNVK
                     EGLKIVKRMDDASATALAKEELRKVGLSERENHYPRHLSGGQKQRVALARALAMQPDI
                     LLLDEPTSALDPELVGEVERSIADAAKTGQTMILVSHDMNFIYQVADKVLFLENGRIL
                     EQGTPEELFHHPKEERTREFFASYSNPQF"
     gene            complement(16493..17296)
                     /locus_tag="U1087_000068"
     CDS             complement(16493..17296)
                     /locus_tag="U1087_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM4754597.1"
                     /translation="MIGVLGITGPAWYQGFLEWLPDGKLFSIRAVFDALPSIIERLPI
                     TIGLTLAGAFFGLILGLVFAIVKINRVRFLYPVQAVFVSFLRGTPILVQLMLTYYGIP
                     LVLRGLNQEYGLDWNINAIPAAVFAITAFAFNEAAYMSESIRAAIQAVSPGEIEAARS
                     LGMTSGQVYRRIIIPNAAVIATPSLINTLIGLTKGTSLAFSAGIVEVYAQAQIQGGAD
                     YRYFERYISVSLVYWALSVLIESFGRFLENKMAIQAPESVDISGVGGDR"
     gene            complement(17482..18333)
                     /locus_tag="U1087_000069"
     CDS             complement(17482..18333)
                     /locus_tag="U1087_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002962793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM4754598.1"
                     /translation="MKLRTILSLAGITALATVALAACSSTSNSSNTSSSEADKKETIV
                     MGTVGTTKPFSYRDENGELTGFDIELARAIFDGSDQYELTFETTDGSGQFPGLDSGRF
                     DLLGNNTSYTKERGEKYLYSYPTASTPSVLAVPKDTDIQSYDDIGGHSTQVVTGTTTA
                     AQLEEYNTQHTDKPVDINYTGENITQILTNINDGKYDFKIFDAPTVNAIIADQNLTNL
                     KTIELEAAEKPFIYYVFSSDNTALQSFVNDRIKALNEDGTIAKLTEQFFGKDYAPTAE
                     ELAVPNE"
     gene            complement(18366..19052)
                     /locus_tag="U1087_000070"
     CDS             complement(18366..19052)
                     /locus_tag="U1087_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEM4754599.1"
                     /translation="MGKPIIGITSNEKPVAEGIPIMNLSLSRNFADGIKRAGGLPFYI
                     PLSGETDVVDYVSAIDKLLLTGGQHVLPQFYGQEKLIESDDYFKERDEFELKLVHEAL
                     RQEKPILGICRGMQLFNVARGGTLKQAVEGHRSLPFDLIHQVECKEATPLASIFGQRV
                     AVNSIHSQAIENLGQGLEAIVHSVDDGIIEAVRSMDETRFLGVQWHPELLIDQSGGNQ
                     KLFDYFVQTL"
     gene            complement(19166..19339)
                     /locus_tag="U1087_000071"
     CDS             complement(19166..19339)
                     /locus_tag="U1087_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754600.1"
                     /translation="MKIILTIVYSLGVVWNILFLAVNVGRIPVINLLWPAVILVACAI
                     NLYFLWTRKQESE"
     gene            complement(19592..22132)
                     /gene="mutS"
                     /locus_tag="U1087_000072"
     CDS             complement(19592..22132)
                     /gene="mutS"
                     /locus_tag="U1087_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HEM4754601.1"
                     /translation="MATEKISPGMQQYLDIKANYPDAFLLFRMGDFYELFYEDAVEAA
                     QILELSLTSRNKNAENPIPMAGVPYHAAQQYIDTLVELGHKVAIAEQMEDPKQAVGVV
                     KREVVQVITPGTVTDSSKMGADSNYLVAIDRQGVQFALSYMDVSTGQFFVTSLDDFTS
                     LCGEIRNLRARELVIGYALSEEEEQVFSNQMNLLLSFEDEVTEDVQLIDNSLTDLEKA
                     AAGKLLSYLHRTQMRDLSHLQKVVHYEIKDYLQMDYATKSSLDLLENGRTGKKHGSLY
                     WLLDETKTAMGMRLLRTWIDRPLIDLKRIENRQAVVQVFLDYFFERSDLVEALKGVYD
                     IERLASRVSFGKTMPKDLLQLSQTLGNIPAIKNILQQINEPALGNLVAGLDPIPELHA
                     LISSAIDPEAQGAITDGNIIRTGFDETLDQYRLVMREGAGWIAEVEAKEREASGINNL
                     KIDYNKKDGYYFHVTNSNLGNVPSHFFRKATLKNSERYGTEELAKIEGQMLEARDKSS
                     NLEYEIFMRIRQEVEKYIGRLQKLARTIATIDVLQAFAVVAEQQHLVCPRFTDQRELT
                     INRGRHAVVEKVMGKQTYIPNSIHLNTDTHMQLITGPNMSGKSTYMRQLAVIVIMAQM
                     GSYVPADQAELPIFDAIFTRIGAADDLVSGQSTFMVEMMEANKAVRLATDQSLILFDE
                     LGRGTATYDGMALAQSIIEYIHDKIGAKTLFATHYHELTDLSQTLEHLENVHVSTLEK
                     DGQVTFLHKIAQGPADKSYGIHVAKIAGMPEELLQRADRILQTLENQAPTAPAKPAPS
                     VVAEPSGQIDLFADTPSHPVLKELEKLDIYNMTPMEVMMAVAELKKKI"
     gene            complement(22147..22587)
                     /gene="argR"
                     /locus_tag="U1087_000073"
     CDS             complement(22147..22587)
                     /gene="argR"
                     /locus_tag="U1087_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine repressor"
                     /protein_id="HEM4754602.1"
                     /translation="MNKAGRHDLIKSMIRQEKIGRQTDIQQGLEARGVVVTQTTLSRD
                     LRELGVIKIHENGQSFYSLAIEEERVNFIQLLAQYAYKVDRASFILVLHSELGEAALM
                     ANIIDAEKPETILGTLAGANTLLVICRDDVAAQQVEAEINYYLN"
     gene            22694..24382
                     /locus_tag="U1087_000074"
     CDS             22694..24382
                     /locus_tag="U1087_000074"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005591476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEM4754603.1"
                     /translation="MNQKQVIAERLAAILPSLEVEAIYNLLEKPKSSEMGDIAFPAFS
                     LAKVERKAPQAIAADIVEKLDTTGFEKVVATGPYVNFFLDKAAISHQVLTDVITEKDQ
                     YGKLNIGQGRNVTIDMSSPNIAKPFSVGHLRSTVIGDALANIHEKLGYKPIRINHLGD
                     WGKQFGMLIVAYKLWGDKAAVEADPISELLKLYVRINAEAEEKPELDDEARQWFKKLE
                     DGDPEAHELWQWFRDESLVEFNRIYDKLDVTFDSYNGEAFYNDKMDEGIQILEEKGLL
                     QESKGARIVDLESYNLPPALIMKTDGATLYITRDMATAMYRKRTYDFVKSIYVVGQEQ
                     INHFKQLKAVLKEMDFDWSDDMTHVTFGLVTKDKKKLSTRKGNIILLEPTLDEAISRA
                     LTQIEAKNPDLENKEEVAHAVGVGAVKFYDLKTDRDNGYDFDLEAMVSFEGETGPYVQ
                     YAYARIQSILRKANFVPNAENDYKLADAESWDIIKHIQNFSNVVERAGDKFDPSLIAK
                     YAINLAQAFNKYYAHTRILDESPERDSRLALAYATGLVLKEALRLLGVKAPEKM"
     gene            24562..25476
                     /locus_tag="U1087_000075"
     CDS             24562..25476
                     /locus_tag="U1087_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEM4754604.1"
                     /translation="MKTFLRRKGIACQLLAAIFIVGINLQSPPSASANARGDDYPYTA
                     VDAVDPWRLYTRQCTSFVAFRLSKVNGFEIPPAYGNADVWGYRAQREGYRVDMSPAVG
                     SVAWWETPMHVAWVSAVNGDTVEIEEYNYGVRYTYGRRVIPKNAVSGYIHFKNLGAGT
                     TNSQPAVAPSGTYTFTSQLAIKSQASLSSPTLDYYYAGESVRYDKVLEADGQRWISYI
                     SYSGARRYIAIQPTITQSTNNSLPASGSYTIQSYSSVRNNPSLSSPEITFYGAGSVVR
                     YDKVITAEGRTWISYISYSGARRYIAIS"
     gene            complement(25530..26054)
                     /locus_tag="U1087_000076"
     CDS             complement(25530..26054)
                     /locus_tag="U1087_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754605.1"
                     /translation="MKRPIHLYIFVVLSSIASVLRGFNVFFAKYDEAVVRQLLQNFNV
                     EGLDEVYFTYMRESVNFQTNLVNKAFAVVLLLAVIATIVLLFLKKNEQASYTYLGYLF
                     VTLLFSTYAFIGEKGLSQIYTDSVMRQSVEAQAMMNYIIRVVLFAIYFGVTVFFHLRK
                     PKEKPSTAINSTDI"
     gene            26166..26348
                     /locus_tag="U1087_000077"
     CDS             26166..26348
                     /locus_tag="U1087_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754606.1"
                     /translation="MKKLPTYIGVIIFVVTLLINWLLPSLAKVLNTFFIWTIVACLLY
                     TIYYWIRYWLYVRKQR"
     gene            complement(26388..27908)
                     /gene="malQ"
                     /locus_tag="U1087_000078"
     CDS             complement(26388..27908)
                     /gene="malQ"
                     /locus_tag="U1087_000078"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HEM4754607.1"
                     /translation="MKVRQSGVLMHISSLPGKYGIGSMGQSAYEFVDFLVRTKQRYWQ
                     ILPLGTTSYGDSPYQSFSAFAGNTHFIDFDILIDKGWLAAEDLHGVDFGQNPTEVDYA
                     AIFYARRPLLEKVVANMKAQGLPEDYWMFLGENDFWIHTFAEYMAIKEHFDLKPWTEW
                     EDQGARLRYHDTLEYYRHLLADQIDYHRITQYLFFSQWKALKAYANAKGVEFVGDMPI
                     YIAADSADMWANPHFFKTDEEGKPSVVAGCPPDAFSEIGQLWGNPIYDWEAMKHDGFT
                     WWVARLRESFKIYDMVRIDHFIGFASFWEIPAGEETAVNGYRVEAPGFELFDTIKREL
                     GDLNIIAEDLGSVTDKVIQLRDTTGFPGMKVLQFAFDPEGDSIEMPHNHPNNVVAYTG
                     THDNDTILGWYENETTKESRAFLDKYSNRREGETVSHALFRLLFGSPAFMAVATMQDL
                     LGLDGSARMNLPNTLGGNWTWRMTADQLTPEIEAELLDLTETYRRVNVHLVDEKSE"
     gene            28224..29483
                     /locus_tag="U1087_000079"
     CDS             28224..29483
                     /locus_tag="U1087_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEM4754608.1"
                     /translation="MKYNLLKSVALLAASTAVLAACSNSGSSTEASKSAEGSKELTVY
                     VDQGYESYINDVKADFEKENGVTVTVKTGDALTGLDNLSLDNQSGSAPDVMMAPYDRV
                     GSLGSEGQLSELTLADDSKADDTTTALVTNGGKVYGSPAVIETLVLYYNKDLLTEAPK
                     TFAELETLAKDSKYAFAGEEGKTSAFLADWTNFYYTYGLLSGYGGYVFGENGTNPKDI
                     GLANEGAIKAIEYAKTWYEKWPQGLQDGTAANNLINTQFTDGKAAAIIEGPWKAASYK
                     EAGVNYGVATIPTLVNGKNYSAFGGGKAWVVPAGAKNQEMAQKFVDFLTATDQQKALY
                     DATNEVPANTEAREYAVSKKDELTTAVINQFASAQPMPNISEMGSVWTPAGNMLFEAA
                     SGSKDAKTAATDAVKAIADEIAQKHSN"
     gene            29696..30991
                     /locus_tag="U1087_000080"
     CDS             29696..30991
                     /locus_tag="U1087_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003027817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM4754609.1"
                     /translation="MTMKQNPGKALLLSLIPGLGQIYNKQKAKGYIFLGVTLAFLVYF
                     IAIAAGELGNLITLGSVRGQDNSLFMLIRGSFHLIITVVYLAFYALNLKDARDTAKRW
                     NSGMPVATTLKEMVKGIYENGFPYLLIIPSYIAMTFAIIFPVVVTLFIAFTNYDFKHL
                     PPSALLDWIGITNFTNIWKLSTFRTAFGSVLGWTIIWALCASTAQIVIGILTAIIANQ
                     PFIKGKRIFGVIFLLPWAVPAFVTILTFSNMFNDSVGAINTQVLPFLSKFLPFIDNFL
                     IPWKTDPFWTKVALIMMQAWLGFPYIYVLTLGILQSIPNDLYEAAYIDGASAIQKFRN
                     ITLPMILAVAAPTLISQYTFNFNNFSIIYLFNNGGPGSVGGGAGSTDILISWIYKLTT
                     GTSPQYSMAAAVTLIISMIVISISMIAFKKLNAFEMEDV"
     gene            30993..31835
                     /locus_tag="U1087_000081"
     CDS             30993..31835
                     /locus_tag="U1087_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001065636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM4754610.1"
                     /translation="MKVSVKTRRILNQTLTYLYLIVLSVIIIYPLLITIMSAFKSGNV
                     VAFKLDSNINFTLDNFSKLFSETLYGTWYFNTLIIALLTMVIQTSIVVLAGYAYSRYN
                     FIARKQSLVFFLIIQMVPTMAALTAFFVMALMLNALNQSWFLIFLYVGGGIPMNAWLM
                     KGYFDTVPISLDESAKLDGAGHFRRFWQIVLPLVRPMIAVQALWAFMGPFGDYILSKF
                     LLREKEFYTVAVGLQTFISDVKNMKIAYFAAGAILIALPISILFFFLQKNFVSGLTSG
                     GDKG"
     gene            31895..32677
                     /locus_tag="U1087_000082"
     CDS             31895..32677
                     /locus_tag="U1087_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754611.1"
                     /translation="MLPYPFSYFSSIFSPRNMFANRRLMNLWQRLFTTLFLVALLLIP
                     SSLQTVNLETYPLENFVEGVYAPLTDQVVDDLRQYAVIENNHLTYTGNTNWEQVTFGD
                     TVSSSSDFTYQFANQSLTIRKGSDILSELTYEGLNTDDFASKETLTATISKKWYQANR
                     AAVGLSITLISTFILTTKLLFILLGASFFLFLTKKSRFFHFETFAECYNFALNCLGLP
                     TLIACLIGLFGQPVTTLLTIQNILFVLCLLWVFFKTKFRDEI"
     gene            32687..33670
                     /locus_tag="U1087_000083"
     CDS             32687..33670
                     /locus_tag="U1087_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM4754612.1"
                     /translation="MRATIKDVAKLAGVSPSTVTRVIQNSSAISQKTKDLVRKAMADL
                     NYHPNLNARSLVSSYTQVIGLVLPDDSDVFYQNPFFPTALRGISQVAADHNYAIQIST
                     GKNEEQRLEAISQMVYGKRVDGLIFLYSKPDDPLVQLAIQHKFPFLILGKADSPFISL
                     VDNDNIQAGFEATNYFINKGYKNIAFVAGNKELVVSQDRYTGYKNALKSHNIPLDENK
                     VKFVSGFLLEDSAYKISKKLLKQDLDAIVTTDTSVAEGVVKYLNEVGVKLPIISFDSV
                     KPKLDIEAYVDVHAIKLGRVAFNTLHQIINDNKEDKQVCYRRVIPHTITEL"
     gene            33694..35745
                     /gene="pulA"
                     /locus_tag="U1087_000084"
     CDS             33694..35745
                     /gene="pulA"
                     /locus_tag="U1087_000084"
                     /EC_number="3.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015445376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pullulanase"
                     /protein_id="HEM4754613.1"
                     /translation="MALRQFQASLDDVATIRLVMEKRFDSEHMSFSLESNDATSQLFI
                     HSCLEVDNLVIYYLTSLHALTLDKDYTIYDQDRNKTELGYGHIVRSTLFEQSYTYNGQ
                     DLGATYRPEATTFKLWAPISKQVFLVLEGNPHAMTKGAKGVWEITVEGDLEAHSYHYL
                     HKVNSEWISVHDPYALSSTANSGDSYVINPDKLHKIRRAKTQRPISQAIIYEMSVRDF
                     SWQKEAGFKHRSQFLGLTESPTMDGMKLGMDYIRELGVTHIQLLPVYDFGSVDENKPQ
                     AVYNWGYDPMQYNLPEGSYSSQPNDPYARILELQEAIQAYHDADISVIMDVVYNHVYH
                     AEKYAFELIVPGYFYRYDDHGMRTDGTFCGNDVASERSMVRNYIKQSLRQWLELYGFD
                     GFRFDLMGILDSETINQIQIELSAIHPNVYLYGEGWKMATGLEFEKLAHQYNAEQLPE
                     ISFFNDDYRDTFKKLLLNPNRLVDKQLHEKVQHLLTGSRLSHFLTPQQSLNYIECHDN
                     ATAFDYFHIENPNWTPQQQKRAASFGLQLILISQGMAFIHSGQEFFRTKDEIDNTYNV
                     PDRINHLDWTRAIRYKEHIEFIQELITFRKNNPILSQDNYESIQETCDFYWLTEYVLR
                     YQVTSEEKTIQFIINFADSDFTYEREKDKAVLYNYPPVEERDQQEITIAGQSICILED
                     K"
BASE COUNT        10368 a         8664 c         6842 g         9910 t
ORIGIN      
        1 ttcttttgtg ttttcgtaga aaccgttgat gttttcgttt tcaatatgta taatattctt
       61 gagattatat caaatggagg ttctcatgaa atttcgtttt agtaagtgtg ccctaaccct
      121 cagcctagct ttactggcta gcaccaacaa cgcccttgtc tctgctgaag aaaccagcac
      181 agatacccct gttttgaaga ctgaaacaga aatcagtagc tctgtagcaa ccagccaagc
      241 cgaagcaacg actggtgagg ttgccacacc gacaactacc gaaactacag ccggtgaggc
      301 tgtcacgcca actacagaaa ccactgacca gtctgttaca ccagtaacag aagaagctgc
      361 tcctgttgta gaaaccagca atactccagt taacgacaca acagctagcc ctgttacagc
      421 aacacgcgca gcggctactg agactacaac tcctgtcgaa ggccagtctg ttgatgttcg
      481 tatcctcgca acaactgacc tccatacgaa cttggtcaac tatgactatt accaggataa
      541 acctgtagaa acactgggtc tagccaaaac agctgttctt atcgaagagg caaaaaaaga
      601 aaatccaaat gtcgtattgg tagataatgg agacaccatt caaggtactc ctcttggaaa
      661 ttacaagtct atcgttgatc ctattgaaga aggtgaacaa catcctatgt acgccgcctt
      721 agagactctg ggatttgatg tcggcacact tggcaaccac gaatttaact acggccttgc
      781 ctacctcgaa aaagtaattc gtacagccaa catgcctcta gtcaatgcta atgtcctcga
      841 tccgactaca aaagactttc tctacacccc ttataccatt gtgaaaaaga cattcacaga
      901 caccgagggt aaaaaggtta cactaaatgt cggtgttaca gggattgttc cccctcaaat
      961 tcttaactgg gacaaagctt atctagaagg aaaagtgatt gttcgtgatg cagttgaagc
     1021 cgttcgcgat attatcccaa ccatgcgaga aaatggcgca gacatcgttc tggtcctttc
     1081 ccactcaggt atcggggatg accaatatga agtcggcgag gaaaatgtcg gttaccaaat
     1141 cgccagcttg tcaggagttg atgcggttat cacaggtcac tcccacgcag aattcccagg
     1201 aactgccgaa aaaccaagct tctatgctaa atactctggc gtggatgata caaatggtaa
     1261 aatcaacggt actcctgtca ccatggcggg taaatacggt gaacacctcg gcgtcatcga
     1321 cctcaatctg gtctttaaag atggcaaatg gacaactact tctagcaaag cggctattcg
     1381 taaaatcgat acaaaatcat ctgtagcaga tggtcgcatc atcgaccttg ctaaagaagc
     1441 ccataacgaa accatcaact atgtgcgcca acaagtcggt gagacaactg ctccaatcaa
     1501 cagcttcttt gcccttgttc aagatgatcc ttctgtacag attgttaaca atgcacagat
     1561 ttggtatgca aaacaacagt tggcgggtac ttcagaagct aatctaccaa tcctatctgc
     1621 ggctgcacca tttaaggctg gtactcgagg cgatgcttca gcctatacag acattcctgc
     1681 tggcccaatc gccatcaaga acgtagcaga cctttacctc tacgacaacg ttgtagccat
     1741 cttaaaagtc aacggtgccc aactcaaaga atggttggaa atgtccgcag ggcaattcaa
     1801 ccaagttgac ccaagctcaa cagagccaca aaacctagtc aacacagatt tccgcactta
     1861 caattttgac gttattgacg gagtaactta tcagtacgat attacgcaac caaataaata
     1921 cgatcgtaac ggtaaggtag tcaacgaaac tgccagcaga gttcggaatc tgcaatacaa
     1981 tgggcaagat gtgacagctg atcaagaatt catcgtggtg accaacaact accgtgcaaa
     2041 cggtactttc cctggggtcc gcgaagcttc tgtcaattac ttgctcaatc tggaaaaccg
     2101 ccaagccatc atcaattata ttatcgctga gaaagttatc aaccctacag cagacaataa
     2161 ctggaccttt acagatagca tcaagggact cgacctccgc ttcttgacag cagatcgtgc
     2221 aaaagaattg gtagctaatc aagaagggct ggtttacctc caagcctcag ctgaaaacga
     2281 aggatttggc gaattcaaat ttgtctacac tgagccaaaa gtagcgactc cagatgaaca
     2341 gcagtcagat caaggtaaca caggtcaaga tattgtactc gaatctggtc aacgaattac
     2401 tcttccagcg gtaaatccac ctgctcctgc tccacaacat aaattggcta gtccacattc
     2461 acaagcgagc accaagacac tccctgcaac aggagaagct acttctatgc ttagtctgct
     2521 cggtctcact ttgattggtt ttgtcggcgc atggactaag aaaaaagaac attaaaataa
     2581 tcaagagctt gttttttcaa gctctttttt accctcatac actctctaga taaattaatc
     2641 aaagcatata aaaatagctc gaagacgtac tcgagctatt tttatcttta tatcgctact
     2701 cccaataaat cggtacatag cgggtttctt tgggactttt tactgtatag gttcccaaat
     2761 ctacccagtt tgattggttc gccaaccgct gttctactct aaactcctga caaaggatcg
     2821 ttgtttctaa gcgaatgttt ccatacttcc ttgcaaaaac aaggtaagaa acgctttctg
     2881 aagcaaagac gagattcccc aaagtcgatt ttctaggacg actaaactcc ataattctac
     2941 cttcttctcc accataaatc gaagaaatca gattttcgct cataatggtt tcatgatagg
     3001 ttgtttcgag agaagtacga ctatcagacg cttgaaaacc tcgactagac gtactcgata
     3061 gttgacgaat aaaagccttt ctcacttcat gattttcaaa ctcataggtc tgctctgttg
     3121 cttgattata caaaaccaat tccgagataa tctgatagct agtccctgga actctaccga
     3181 attgattaag agcaacaaag actatcaaga aaaatccaag agcagcaaaa ataggggtac
     3241 tcaatctttt catgggcaat ctccatcaca tatctcctca atcttcgcta attgcaacga
     3301 ccattgagct atgaacgaat ccatcacgat cctgtttatt cgaatcgttc agagcgatac
     3361 attcactatt tgctaacgtg tgttcgagac tattttctct ctttagatga taaatcattc
     3421 actttattac aataatagta tatcaatatg atttttaaaa aacaactaat caggtatgaa
     3481 aatgtaaacc agatcatgta aaatatgacc aaataactgc aatcacgatg gctggcaaca
     3541 tattggccac acgaatcttt ttgtcccaga tgatattgac accgacacag aagatgaggg
     3601 cggagccgat aaaggagaga ttggcaaggg cctgatccgt catcaaaggt tcaatcaggc
     3661 gggccaaaag agtcacagag ccttgaaaga gaaaaacggg tactgctgaa aagcctgctc
     3721 ccttgtccaa actcgaggtc ataatcaaaa tgataataaa gtccagaata ctcttaacgg
     3781 ccaacaagcg ataatcaccc gtcaatccat cttggatggc tcctagtatg gccatagcac
     3841 cgatacagac ggtcaaagaa gctgtcagga agcatctaag aattgaccat cttggctgtt
     3901 tcctgacctt tctcggagcc agatacccaa gcgctcaaac caaccttcga tatgcagtac
     3961 ttccccaatc aaggtcccca gggctagact aagaaccaaa agcatgctat tttgactttt
     4021 gagttgacca tcaacgactg tcagcagtcc ttctaaacta cctgaaattc ctagaaataa
     4081 aacagctagc ccgctcgcca ccgttagtcc tgactgatgc cgttctttca gtaaatggcc
     4141 aaaccaagat cctagcaaac ctgctagggc aatggccacc gtattgataa tggttcctaa
     4201 tgcgaacatg atcctccttt atgattcact atcatctggc aatagataat aaacttttcc
     4261 atcttcaacc aacaatttca cattctcccc ataattgtta acagacaatc gcttactaga
     4321 ttgataggaa acagtttctt gttctgaaat tagcttaact gtccgttttc gaacatcaat
     4381 gtaacgaatg gccttattta gctctccagc cgctttacca attccaaaac ctgctgctgc
     4441 accgacaagg cctccaagaa agcctactcc agcagcaaca tgggcattct tatccaactc
     4501 ttttgcaata tctgcaacta ctttcatagg accctcttgg gtacgtctat tgcgcttagt
     4561 gtcaatttgg aaaaatttta tcttatcttt gtgccaattg gctatctttt cacctagact
     4621 attacaattg tttagatagt actcatacac atagtaacta ctatcctctg acgccactcc
     4681 ttgcgagaag actagatcta gcttactaag ttccgctaat aatctcaaca aggtttgttg
     4741 atagaataaa ttagtactta acttatcaat taactgttca tacttttcaa aagataatcc
     4801 ttttccctta gtgatactct cttcaatagc tagattgacc tgttctagta acttggttac
     4861 ttcagcacgg aagttagcac actccatcaa ctttagtctt gcaagttcag cattttcgac
     4921 atagtctgct gaaaattttg atagttgaga aatattaact atcaaagcgc gaacagtccc
     4981 tttaaattcc cttacttgaa aatccttaac atcgttcaac gtttctttca ttgaatcaag
     5041 ctgaccattg atttcagcca tataatactg accaactacc atagcagcga cctgcatagc
     5101 tcctgaaaca gcagctgcag cttttgctcc ttttgcaatt tcaacttgag caggagttag
     5161 tattgcatga gccttaaatt ttccttccgc acctttaaca aaagcacgat acttatccgt
     5221 ttcccctttg attttgtgca aatcgcctat cggcaaatcc actttaaaca atcccttagg
     5281 aatattaggc tgtccggctt tcttaagatg atgtttaagt gctggttgaa ctatcttttc
     5341 aacatgagcc aaaatattcg gattcgtaat ttcatatctc tgatatgctg atgaatccaa
     5401 ctcactcatt ttctgaatga gagcaaagca atcatccgaa acaatcaatt ctcggtgttc
     5461 cttttgttct aattcactca tctcccgatt ctccttacct caacaattcc gtcgcgtaac
     5521 taatagcaga aagggcgtag aggggagccg tttctgctcg caagatacga ggaccaagac
     5581 ctgtcttgac cgctcctgct ccttcaaatg cggctacttc ctcaggcgac acgccacctt
     5641 ctggaccgac gatgacaagg actgattggc cgatttctaa gccagacaag attttcacca
     5701 ggttggcttg ttcgccctct tttgcggcct cttcgtaggc taagataatc tggtcaaagc
     5761 ctgctagttg agctaggaaa tccacttttt tctcaaataa acgaacagct ggaatgcgat
     5821 tgcgtttgct ctgctcggct gcgccttggg caattttttc taacttttct gcttttttgc
     5881 ctaatttttt accgtcccat ttgaccacgg accagtccgc tggaaaggcc cagagggctg
     5941 ccatgcctaa ctccgttgcc ttttgggcga caaattcgag cttatctccc ttgggaaagc
     6001 ccatggctat agtgacggaa acaggtaatt cgacattgtc tgacagttct tcgatgattt
     6061 caacagattg gttctggcta tctaccacgc gcgccaagcg tttaatcccg tcgtcaaaga
     6121 ctaggacaat ctgttcatct gcctgcaagc gcatgacaga aaacatatgc ttggcggtgt
     6181 ccttatcgct tatctggaac acgccctgcg gtgctctgcc attgataaaa tactgctgca
     6241 tcctagcctc caatcacacc tgagcggtca gccgtcttct taaagacaca gcaattccac
     6301 tcgccctgaa tcatatgggt ctcaaggaag aaaccagccg cctccgcaga tgctcgcacc
     6361 atgtcccact tatccgcgat gatgccgctc ataatcaggt agccttcgtc cttgaccaga
     6421 cggtaggcat cctcggtcag atggatgaga atgtccgcca agatgttggc aacgataact
     6481 tctgctttaa tatctacgcc acgaagcaaa tcgcccgctg caacatgaat attgctagta
     6541 ttagcgttga ggtcaatatt ttcctgagcc acacgcaccg caacttcatc caagtcatag
     6601 gcataaatct ccttggcacc taggagggag ctagcaatag aaaggacacc tgaacctgtg
     6661 ccgacatcaa tgactgtctc gccaccacgc aagacctgag aaagagcaaa gaggctcatc
     6721 ttggtcgtcg ggtgggttcc tgtaccgaaa gccatgcctg gatccaagcg gataatcttc
     6781 tccccagctg tcgcctcata gtcggtccaa gacggtacaa tggtcaaatc gtggctaatg
     6841 cgggctggct catagtattt cttccagttg tccgcccagt cttcctctgc caattcctga
     6901 ctttctaggc tgacctgacc tgtttccaag ccaaagcctg tcaaatccgc caagcgagtc
     6961 gccaagtctg ccttaacttc ctcaatatct acagtatcag gataataggc cgtaatcaca
     7021 atcatatccg actgttccac ctcgggatag agttcaccaa aacggtcctc ctgccccaca
     7081 tagtcagccg agtcgctaat agccaccccc tgactgcccg tttcaatcat gagatttgaa
     7141 actgcttctt ctgcatcacg atgcacgtga atcgttaatt cttgccatga gttcatgttt
     7201 gttgttcctt ttcttttcta tgcgtcaatc actgtattat tgtaccgatt tctagcctat
     7261 tttacaagtt aatgttacgc gatggagccc taataatact ttttcgaaaa ttttctaatc
     7321 gcactgcgaa taaacatgtg taggaaagtt tgagacggtg gttccaagtt tctgaacgga
     7381 ggtgatgccc atgaaagtgg atagcaaatc tgctagaaag gctagctcat gccagatggt
     7441 aagtaaactt actcatctgg caacgacaaa tcctataaga tttgtctagg gcacgcacta
     7501 gctcgagttt tgaaaaatat cgtttcaaaa ctctcacgtc ggagaactct ggatttatat
     7561 ttatcaagtc tacttgttga aatgctgagc ttgataatcg tcatcatttt agctattcga
     7621 gataaaaaat aaccgtcagc aaactttgac acagttctga cggttattta atctaacgaa
     7681 ctgaaccatc gttatggtcc tgtcagggcg ttgagctgga actcaacgcc ttttctattt
     7741 ttataatagc aaaagtttcg cctgcagtca agcaagaaag aaaacggaat gtcaaataga
     7801 atctattacc ctcaattcta taccaactgc accgtactgt tctaattgtt ctcgtgaata
     7861 gtaatcttcc atatcttcgg gtttcgcgcc tctgatactg ctttgcgtat acccacaaga
     7921 caataaatcc agttctttgt ataactgagc aaaattatca aatatgtgaa gatctaatac
     7981 ttgcacctcg atcgtttgtg tctgattttc tgtacaataa aaacggatgc gatctccaat
     8041 ttgtatatgc ttgcgcttct cgtcataaag tcgtagctca atggtcttct gaccagactt
     8101 catcatttca aaaggttttg gagccagtaa catttcatga accaactcaa tacctcggat
     8161 atgggtaaaa ttctccctcc aacaagtctg ctctgccttt ttcaaaagcc tctccgtccc
     8221 aagaaatcgc aaaatcttgg gcttctgggt ccaccaaaaa atccatgagg tcatctaaac
     8281 cttggtcggc ggtatctttg agaaagcctg cgaagtaggt cagaaactcc gctgaaaagc
     8341 ccttcttggc gtcaaatggc agagcgacca ggtagtcttc ctcgtcaaag cgagacttgt
     8401 cctggttgta gaaaaggaca tactcctcta ggaaaatatc ctcagaagac gcattacctt
     8461 cgtcgtccac cgtttcaatc ccagccacat tttgcgcttc caagataaaa gccaactcaa
     8521 ctgcgtggtt tttcttgtcc cagttgagct cgtaatcgta ggtaaaatgt ttgtccagtg
     8581 ccgcttccag cacatctaaa aatccatgtt ttgccatgtc agtcctcttt cgattttgtg
     8641 ttataataag tgtaccataa tcagctaaca aaagaaacga aaggaagcct atgccagcca
     8701 atctcgccct tcgtatgcgg cccaaatcca ttgatgaagt catcggtcag gaacacctgg
     8761 tcggtcctgg aaagattatc cgtcgcatga ttgatgccaa tatgctgtcg tccatgattc
     8821 tctacggtcc gccagggatt ggtaagacct cgattgcgtc cgccattgct ggtacgacca
     8881 agtatgcctt tcgaaccttt aatgccacga cagacaacca aaaacgcctg caggaaatcg
     8941 ctgaagaagc taaattttct ggtggcctgg tcctcatgct cgatgaaatc caccgcctca
     9001 acaagactaa acaggacttc ctgcttcctc ttttggaaaa cggcaatatc atcatgattg
     9061 gagcaacgac ggaaaatccc ttcttctcaa ttttgcctgc cattcgcagt cgggtgcaga
     9121 tttttgaatt acaacctttg aaaaccagtc acatccgaca ggccttggaa ctggctctga
     9181 cagacagcga acgtggtttt gattttcccg tcaccattga acctgaggcc ctggattttc
     9241 tggcaaatgc gacaaacggt gaccttcgtg ccgcttacaa ttctctagaa ctggctgtgc
     9301 tttcgaccaa ggaaagtgac gacggtagcc gccacattga tctggacgcc gtggaaaata
     9361 gcctgcaaaa gtcctacatc agcatggaca agaacggcga tgcccactac gatatcctct
     9421 ccgccctaca aaaatccatt cgaggtagcg atgtcaatgc cagcctccac tacgccgctc
     9481 gtttgattga ggccgaagat ctgcctagtc tggcccgtcg cttgacggtc attgcctacg
     9541 aagacatcgg cttggccaat ccagaggctc agattcatac ggtgacggcc cttgaagccg
     9601 cccagaaaat tggctttcca gaggcacgca ttttgattgc caatgtggtg attgatttgg
     9661 ctctttctcc caagtccaat tctgcctatc tggctatgga tgcagctctg gctgatttgc
     9721 ggaaaaacgg ccatctgccc attccaaatc atcttcggga tggccactat gctggcagca
     9781 aggagctggg aaatgctatt ggctaccagt atccgcatgc ctatcctgaa aaatgggtgg
     9841 accagcaata cctgcccgat aagttactag ctgcggacta cttcaccgcc aacgacactg
     9901 gaaaatacga gcgtgccttg ggcatgacac aagaaaagat aaaaaatttg aaaaaaaata
     9961 gacgccaaaa tccttgatag aactggtttt tgggtacaca cgctttgaca ccgcttacat
    10021 ttttgccatt tttctcttga tttttcaaaa aaaagtggta ttattaaatc ataaataaga
    10081 actgctgtgg tatacgaatt catacctatg tgttgaccga ctatttttgt attactaggg
    10141 agacaaagat cctctaacag tatgcaagct ggcacaccca gaagcaacta agttagaaac
    10201 gcgtcaccca cctgctttta gcgtgcggga tcaatacaat ccatggataa ccggtaccaa
    10261 tacagcattt ttatttttta ccttccttag ctcagctggc agagcagcgg actcttaatc
    10321 cgtgggtcgt aggttcgatc cctacaggga ggattggttg atatgaggaa agtcttgatt
    10381 tatcaaggct ttttctcgtt ttttgagtga atttggtcaa aatttggtca aaaagaatcc
    10441 tttcacattg tgaagggcta tttttttaac ttatcccaca ggacaacacg tttttcctgt
    10501 aatgatttct gtacatcgat gatgcgttgg ttggaagagc ctcgaaattg cagcataaga
    10561 ttgcgcttgg tacggtcata acggccgtca actagaatat ctaaatagga tagtaactct
    10621 aacttatccg gagtttctaa catcatttct tcccatgtgt agcctgtcca agaccaaatg
    10681 tccttttctg gcagttcttt ccgaattcgc tttacgagtg ggaggaccgt gcctgtgttc
    10741 agaaaaggct cgccacccaa gagagttaag ccctgcacat agggctggcc caagtctgct
    10801 aaaatgcggt cttcaagctc cttggtatag ggaatccctg ctttaaaaga ccaggttgca
    10861 acattgtagc agccctcaca gtgaaacaga cagccactaa catatagaga gcaacggact
    10921 ccttctccat ccacaaagtt aaaggctttg tagtccatta ttcgcccttg gctaagttcc
    10981 tcgctcttcc attcttgtgg tttaggatta ttcatttcaa atacttgagc ataagcaaat
    11041 gaaatctgat cgtttggatg aattccgttt taccagtaca cagactgttt ttatccataa
    11101 atggtacttc caatgcttta gctcggattg atcccagcaa gcttagtgcg gaaccaatct
    11161 caattccttt cctgttttga ttcagcagtt tgtcactccc attaatcctc aatccagtat
    11221 ctttctactc cgtctcgaac atcttccaaa acgccaccac aagccacaat cgtgcgacgg
    11281 ctggcttgat tgtctgtcga gcaagtcaca aggaccttgg aaatattttt ggttgcggct
    11341 tcctgtaaac caagtcgcag ctggtccttg gcatagccct ttcctcgctc ggtcggacga
    11401 atggaatatc cgatatgacc gcctttattg agcaggaaat cattgagccg taggcgtaga
    11461 ctgagaaaac caagggctcg accagtctgg tcaaatgaca catattgaat ggaaggaaca
    11521 aaaccgtctg gcagattgag acctgcctca tagtctttgt ttctaaaaat ccattcttca
    11581 aagtccacat ctttggagat aaagcctccg tccatagctg agcctgccgc ttcaaactct
    11641 gccagcattt ccaaaatcgt ttccttatcc gctatagtcg gtcttcttag ttccattcta
    11701 gcctccatat tgtctcttga aaaattcact gatgatgtct atatccagtc ccaagtcctg
    11761 cacaatttct gccttgtgga aatcatcata gttgtcctta ccgctccaaa caaaagaatt
    11821 ggtcacaatc tgatagtcct tatctgactc gactgctctg ccattgacca aaagatcctc
    11881 accgctttgg acaatgcccc acatctgagg gtggaggcct gtctggagac tggagagtaa
    11941 gtctctgccc ttgatacgaa ctaagagtac tcgcttggaa aagggcaaga ccttgaccaa
    12001 gtccgaataa aagattggtc ccgccgacaa ggaagctcga ataccgaagc cgttgatgac
    12061 cgctccatcc gcctgcaaac ctagttgact cgcctgttca aataaagcct gacaaataac
    12121 aggggccaga gttgataacc cttgacgaat gctgtctcgc tctccgtcta gtgcctgagg
    12181 taaaatcgct atcggtttgg aaaaagctgc gtcacgttcc gatttcatct ggtcgataat
    12241 agccttgacc gccctgtctt cttgggtcag tttctccacc tcaatcaagt cataagcctg
    12301 aacctcgtgc cgtccatctg caaaacaccg cagggataga tgaccgacaa agcgaccata
    12361 ctgaccagct tggcagatac taactccgcc aatctgacta ggttgtttta gaatggtatg
    12421 ggtatgtccg cccaaaatca cgttaagctc agggaaatcc ttggccaaat gcacatcctc
    12481 atcgtatccc agatgactga gcaagaccag atgagccgat ggattctgac tcacaatctg
    12541 atccaccaat cgccgcagag cttgtttatg gtcttcaaaa atcacattct ccgacggtga
    12601 cgcaacctcc tgggtttcca aggtagtcaa accgaagaca tagaggtttt tcccattcat
    12661 atcaaattca aggacatcct caagcggcac caactcatct gccacctcca catcctgata
    12721 gcggagattg gaggacacaa ttggaaactg ggcatagtca tccaagcgac taatcaactc
    12781 atctccgtgg tcaaactcat gattgcccaa ggtcatagcc tgacaaccaa tttgattcat
    12841 tagctcgatt tccttgactc ctcggtacat attgaaaaag atattacccg aaaagagatc
    12901 gccgctgtca aagacaaagg tcggaactcc ctctttttca ttcctagccc gaatgttcgc
    12961 aatcagttgc gccttctttg gaaaattctc catgtaggaa tgcatatcat tggtatggag
    13021 aatgctaata tctgtatagt ccatactatt ttttcttatt ttttgcttgt ttgagcaatt
    13081 cctgcacacg cgctttttta tcctgcttca cattagaatt cttctcgtga tagcgtgtca
    13141 ccagggcctt ccccttatcg tctaattgat attttcccat tgttttctcc tcttttttta
    13201 tctcttattt gtttataata aacttccaca gctaactgga actgtggaag ctctacatag
    13261 tctgtttatt acttataagc tcgacccatt catgtgtttc acacgcgccg aaatttcctt
    13321 gtgacggcct tttaccatcg gacgggcctg tggattgcct agataaccac aagttcgttt
    13381 aacaacatcc accgacttag gatcgctatt cccgcaattt ggacacttga agccacgctc
    13441 cgtcggctca aaatcacctt caaaatcgca agcgtaacaa tggtcaattg gagtattggt
    13501 tcccaagtaa ccaacacggt cataagcata gtcccaaaca gcttccaagg cctttggatt
    13561 ttgttgcagc acagggtatt cacagtaatg gataaatcca ccactggcac ctacagcagg
    13621 ataaattttc tcaaagtcca gtttttcaaa cggtgttgga tttttgcgta catcataatg
    13681 gaaactgtta gtgtaatatt ctttatccgt aatgtcctta acgatgccaa atttctctgt
    13741 atccatacgg cagaagcggt ctgtcaggct ttcagatggt gtcgaataaa ctgagaaatg
    13801 ataaccatat tcatccgacc aatcttcaac caaggctttc attttcttga taatatccac
    13861 cgtgaaatct tttgcctctg ggttggtctc ccattcgcca ccgtaaaata ctgttgcgac
    13921 ttcatacaaa ccaatgtacc ccaaagatac ggttgctcga cgatttttaa agacttcatc
    13981 tactgcgtct gtcttagcca agcgtttgcc gaatgcccca tactgataca aaattggtgc
    14041 attggcaggt gtcgcctcct tgacccgctc cacgcggtaa accaaggcat ccttagcaat
    14101 ggccatacgt tctacaaaga tttcccagaa cttatcctta tctccagcag actccatggc
    14161 aatccgtggc aaattgacgg ttacgacacc caagttcatc cgaccagatg tcacatcctg
    14221 cccattttca tccttccaac cttgaaggaa agaacggcag cccattggca ccttgaaaga
    14281 acctgtcaac tcaacaatct tgtcataaga aagcatatct ggatacatac gcttggtcgc
    14341 acattcaatc gccaattgct tgatgtcata gtttggagaa tctggctcca agttcaatcc
    14401 acgcttaacg gtgaaaatca acttaggaaa gatagctgtc cgaccttctc gccctagacc
    14461 cttgatacga atgttcaaaa tcgctttttg aatttctcgc tcaaaccatg atgtccctaa
    14521 cccaaaaccg agtgaggtaa agggtgtttg tccattggaa gtaaagaggg tgttgatttc
    14581 atactccaaa gactgcatag catcatagat gtctttttgc gtttttgcac gcgcatattc
    14641 ttcttgcttg tctggcaata cccaatcctt ggcgtctttc aaatgctttt ggtaattgag
    14701 ttccgcataa ggcgccaaaa cttcatcgat acggtcagct gagcaaccac catattgact
    14761 agaagccaca ttggcaatga tttgtgaaat ctgagccgta gctgtttgga tagacttcgg
    14821 actttctaca tcggcatttc ctatcttgaa gccttgtgcc aacattcctt tgaaatcaat
    14881 caaacaacag ttggtcattg gtgtataagg gctgtaatcc aaatcatgat aatggatgtc
    14941 acccttttga tgagcattgg ctacatgagc tggtaataat ttaagaccga ttgacttgcc
    15001 gacaatcccc gctgtcaggt cccgttgagt attgaacaca tccgcgtcct tattggcatt
    15061 ttcattgacc acagactggt ccttgctcaa cagcttatga atctcaaaat taatatcggt
    15121 agcctgatga cggcgaaaat cacggcgtgt tcggtattga atataaagct ccgccaaatc
    15181 atataaatga gcctttaaca attcctgttc aacgaccgtt tgaatttcgt aaatttgaac
    15241 atctttttca aatcggcgac caatttcagc caaaacagct tctaatacaa tttttaaacc
    15301 tgcctctgaa acaggatgtt ctaattcttg gtttgcccgc cgaagagcag aaaaaatctt
    15361 atcctggtca aaggatactg tccgtccatc acgttttaaa actaataatt ctatactcgg
    15421 taagacattt tcttgcacat tcatctgaca aacctccaaa attcttcact tctattagtg
    15481 tagcacttca caaaacaaaa atcaatatct tgtgtaaaaa aatattaaac aacctatcca
    15541 tgcactatat ataggtcttg aaaattctat caattggaaa acaactgtgc caaatttcac
    15601 cactcgacaa ggatgaatta ctagattgaa atatgacaac agattgggca aaggtctaac
    15661 ttctctatca gaaaacctaa aaaacagccc tctaacaggg ctggctctat gtattgaaaa
    15721 taggctaggg cgggtcacca catgcctatt taaaattgag gatttgaata agaggcgaaa
    15781 aattctctag tccgttcttc tttaggatga tggaaaagct cctcaggtgt cccctgctcc
    15841 aggatacggc cgttttctag aaataatacc ttatccgcca cttggtaaat gaaattcatg
    15901 tcatgactaa ctaaaatcat cgtttgtcct gtcttagccg catcggcaat ggaacgttct
    15961 acttctccaa ccaactctgg atcaagcgcc gaagtcggct catctagtag caaaatgtct
    16021 ggttgcatgg caagagcgcg tgcaagagcc acacgttgct tttgaccacc tgacagatgt
    16081 cttggataat ggttctcacg ttctgacaga ccgacctttc tcaattcttc tttggcaagg
    16141 gcggttgcag atgcgtcatc catccgcttg acaattttaa gcccttcctt gacgttatca
    16201 agagctgtct ttcgttcaaa cagattaaac tgctgaaaga ccatagccag tttgcggcgt
    16261 aaggtcaata tctcctcttt tgaaatattg gtaaaatcaa ctgtaaaacc atcaatttcg
    16321 atactccccg catctgcctg ctccagatag ttcagactac gcaaaatggt tgattttcct
    16381 gctccagatg gtccaacaag ggcaataacc tgcccttttt caatgtccat atcgattcca
    16441 tctagtactt tttgtcctga aaattccttg actaaattgc gaattttaat cattagcgat
    16501 cacctccaac tccagaaata tctactgatt caggggcctg aatagccatt ttattttcaa
    16561 ggaaacggcc gaaagactca atcagaacag agagcgccca gtagaccaaa gagacagaaa
    16621 tgtaccgctc aaagtagcga tagtctgccc cgccttgaat ctgtgcctgt gcatagacct
    16681 caacgatacc cgcactgaag gctagggaag ttcctttagt cagaccaatc aaggtgttaa
    16741 tcaacgacgg agttgcaatc acagccgcat taggaatgat gatccgacga taaacctggc
    16801 cagaagtcat acctaaggaa cgagccgcct caatctcccc tggactaaca gcctgaatcg
    16861 cagcacgaat agactcactc atataggctg cctcattaaa tgcaaaggct gtaatcgcaa
    16921 agacagctgc aggaatagca ttgatattcc aatcaagacc atattcctga ttgagccctc
    16981 taagaaccaa tggaattccg tagtaggtca acatcagctg caccaagata ggagtgcctc
    17041 gcaaaaaact aacaaaaact gcctgaacgg gatataagaa tcgcacacga ttaatcttta
    17101 caatcgcaaa aaccaagccc aatatcaaac caaaaaaagc acctgcgagc gtcaagccaa
    17161 tcgtaatcgg taaacgttca ataatggagg gtagggcatc aaaaacagcc ctaatactaa
    17221 atagcttacc atccggtaac cactctaaaa aaccttgata ccatgccggt cctgttattc
    17281 ctaatacacc aatcatactc ttctccaaac atttaaaaat gacagatttt ctgccgtata
    17341 ctctatttta tcatgtaacc acccacatca accttatata tattttatgg ctgtgataag
    17401 taatcttaat gattataaaa agacaatgaa aaagaaacag cccacttgga ctgctccctc
    17461 ctgtcacaat actatcgact cctattcatt aggaacagct agttcctccg ccgttggagc
    17521 atagtctttt ccgaagaatt gctctgtcaa tttcgcaatg gtcccatctt cgttcaaagc
    17581 cttgatacgg tcgttgacaa agctttgtag agccgtattg tccgaagaaa atacatagta
    17641 aataaacggt ttttctgctg cttcaagctc gattgtttta agatttgtca aattttgatc
    17701 tgcaataata gcattaaccg taggggcatc aaaaatttta aaatcatact tgccatcatt
    17761 tatattggtc aaaatctgtg tgatattttc accagtatag ttgatgtcga ctggtttatc
    17821 cgtatgctga gtattgtatt cctctagctg agcagctgtt gttgtccctg taactacctg
    17881 tgtagaatga ccaccaatat catcataaga ctgaatatcc gtatcttttg gcacagctaa
    17941 aacggatggt gtagaggccg ttggataaga atagaggtat ttttcaccac gctcttttgt
    18001 ataggaagta ttattcccta acaaatcaaa gcgtcctgaa tccaagccag ggaattgacc
    18061 gctaccatct gttgtttcaa aggtcaattc atactggtca gaaccatcaa agatagctcg
    18121 agccaattca atatcaaacc ctgtcaattc tccattctca tctcgataag aaaaaggctt
    18181 ggtagtccca acagttccca ttacgatggt ttctttttta tccgcttctg aagaactagt
    18241 gtttgatgag tttgaggtag acgagcaagc tgccaaagca actgtcgcaa gagctgtaat
    18301 accagccagt gatagaatag ttcttaattt catagtaatt ctccttttgt ataagcaagt
    18361 cagacctaca aggtctgcac aaaataatca aatagcttct gattgccgcc actttgatca
    18421 atcagaagtt ccggatgcca ctggacaccc agaaaacgtg tctcatccat tgatcggaca
    18481 gcctcaataa taccatcatc cacagaatgc acaatcgctt ctagcccctg acccagattc
    18541 tctatcgcct ggctgtgaat agaattgaca gctactctct gaccaaaaat actagccaga
    18601 ggcgttgcct ctttacattc tacctggtga atcagatcaa aaggcaagga ccgatgcccc
    18661 tctaccgctt gtttgagagt tcctccacgt gcaacattga aaagctgcat ccccctgcaa
    18721 atccccaaaa tcggtttttc ctgtctcaag gcttcgtgga ccaatttcag ttcaaattcg
    18781 tcacgttcct tgaaatagtc atcgctttcg atgagttttt cttgaccgta aaactgaggt
    18841 aatacatgtt gaccacccgt cagtaataac ttatcaatcg ccgacacata gtcgacaaca
    18901 tccgtttcac cagacaaggg gatataaaaa ggaaggcccc ccgctcgctt gattccatct
    18961 gcaaagttac gagacaacga taaattcata atcggaatcc cctctgcgac aggcttttca
    19021 ttactggtga tgccaataat cggtttcccc atcctgccct cctttcgtaa tgtatagaca
    19081 ctatcttatc atgctctctc tttttcgtat attttaaatt atttatagcc agccataaaa
    19141 aatatttatg gatcaaaaaa agagcctatt ctgactcttg ttttctagtc cataaaaagt
    19201 acaggttaat agcacaggcc actaaaatca cagcaggcca aagcaagttg atgactggaa
    19261 ttctgccaac atttaccgca agaaagagga tattccacac cactcccaag ctatagacaa
    19321 tcgtcaaaat aattttcata aaacactcca acaaaatgat agtgctatta tactacaaac
    19381 gaccgttaat gtccttgatt tgccgctcca ttttccgatg gtttaggaaa aatagcaaag
    19441 cgtataccaa ggtaaagata aaccagaaga ggtagataag ttccttgtcc gacaatagaa
    19501 gaggttatga gagaaataat ggttccgaga ataacaccta aactgactaa acggcaaaaa
    19561 agccagaaca attgtcctga ctttcattgt cttatatttt tttcttcaac tccgccactg
    19621 ccatcatgac ttccattggg gtcatattgt agatgtccag tttttctaat tctttgagga
    19681 ctgggtgaga aggtgtgtct gcaaagaggt cgatttgacc agacggttct gccaccactg
    19741 atggagctgg ttttgctggt gcagtagggg cttggttttc aagcgtctgc aaaatcctat
    19801 ccgcccgctg caatagctcc tctggcattc ccgcaatctt agccacatga atcccgtagg
    19861 acttgtcagc tgggccttgt gcaatcttgt ggaggaaggt gacttgaccg tccttctcca
    19921 aggtcgacac atggacattc tctaagtgtt ccaaggtctg gctaaggtct gtcaactcat
    19981 ggtagtgggt ggcaaagagg gtcttggctc caatcttgtc gtggatatac tcgatgatag
    20041 actgggccag agccatgccg tcgtaagtgg ctgttccccg acccagctca tcaaagagaa
    20101 ttagggactg gtctgtcgcc aagcggactg ccttgttggc ctccatcatc tccaccatga
    20161 aggtcgattg accgctgact agatcatctg ccgcaccgat acgggtgaag atagcatcga
    20221 aaatcggtaa ttcagcctga tccgcaggca cataggaacc catctgcgcc atgatgacga
    20281 taactgccaa ctgccgcata taggtagact taccactcat gtttggacca gtaatcagtt
    20341 gcatatgcgt atcggtattc aagtgaatag agttgggaat gtaggtctgc ttgcccatga
    20401 ccttctccac caccgcatga cgaccacggt taatggtcag ttctctttga tctgtaaagc
    20461 gtggacaaac caaatgttgc tgctccgcca caactgcaaa ggcctgcaaa acatcgatgg
    20521 tcgcaatggt ccgagccaac ttctgcaagc gaccgatata cttctcaacc tcttggcgaa
    20581 tccgcatgaa aatctcgtac tccaagttag acgacttatc acgcgcctcc aacatctgcc
    20641 cttcgatctt agccaactct tccgttccat agcgctccga gtttttcaag gtcgccttac
    20701 ggaaaaaatg actaggcaca ttgcccagat tggaattggt cacatggaaa taatagccgt
    20761 cttttttgtt gtaatcaatc ttaagattgt tgataccaga cgcttcacgc tccttggcct
    20821 caacctccgc aatccagccc gccccctcac gcataaccag acggtactgg tccaaggttt
    20881 catcaaagcc cgtgcggatg atgttcccgt ctgtaatagc cccttgggct tctgggtcaa
    20941 tagcagagct gatgagagcg tgcagttctg ggattgggtc caatccagcc accagattgc
    21001 ctagagcagg ctcattgatt tgttgcaaga tattcttgat tgctgggata tttcccaaag
    21061 tctgggagag ctgcaagaga tccttgggca tggtttttcc aaaagacact cggctggcca
    21121 aacgttcgat gtcatagaca ccttttaaag cctcgaccaa gtcactccgt tcaaagaagt
    21181 aatccagaaa gacctgtacg acagcctgac gattctcaat ccgcttaagg tcaatcaatg
    21241 gacgatcaat ccatgtccgc aatagtcgca tacccatggc tgtcttggtt tcgtctaaca
    21301 accagtacaa actaccatgc ttcttgcctg tccgaccgtt ttcaagcaga tccagactgg
    21361 acttggttgc atagtccatt tgcagatagt ccttgatttc ataatggacc accttttgca
    21421 agtggctcag atctcgcatc tgagtccgat gtaggtagct gaggagttta cctgccgcag
    21481 ccttttccaa gtctgtcagc gaattgtcaa tcagctggac gtcttccgtc acctcatcct
    21541 caaaagagag caggaggttc atctgattag aaaagacctg ctcttcttcc tcagataaag
    21601 catagccgat gaccaattca cgtgctcgta aattgcggat ttcaccgcaa agactagtaa
    21661 aatcatccaa actagtcaca aaaaactgac ctgttgacac atccatataa gaaagtgcga
    21721 actgcactcc ctgacggtca atcgcaacca aatagttact gtctgctccc attttggacg
    21781 agtctgttac cgtaccaggc gtgatgacct gcaccacttc ccgcttgacc acgccgactg
    21841 cctgcttagg atcttccatc tgctcagcta tagcgacctt atgccccagt tcaacaagtg
    21901 tgtcgatata ctgttgtgcc gcgtgatacg gtacccccgc cataggaatc ggattttccg
    21961 cattcttatt acgactggtc aaggacaatt ccaaaatctg tgccgcttct accgcatctt
    22021 cataaaataa ttcataaaag tctcccatac ggaaaagcaa aaaagcatct ggatagtttg
    22081 cttttatatc cagatactgc tgcattcccg gagaaatttt ttctgttgcc atcatctctc
    22141 cttgttctaa ttcaaatagt agttaatctc cgcttcaact tgctgagccg ctacatcatc
    22201 tcgacaaata actaaaagtg tattagctcc cgccagcgtt cccaaaatag tctctggctt
    22261 ttctgcatca atgatattgg ccatcaaggc cgcttctccc agttctgaat gaaggaccag
    22321 aataaaacta gccctatcta ctttatacgc atattgtgcc aataattgga taaaattcac
    22381 gcgctcttct tcaatagcta aggaataaaa tgattgccca ttctcatgaa tttttatcac
    22441 tcccaactca cgtaaatcac gagacaaggt tgtctgggtt accactaccc ctcgagcctc
    22501 taaaccttgc tgaatatccg tttgtcgccc tattttttct tgacgaatca tggactttat
    22561 taaatcatgt cgtcctgctt tattcatcat tttacctcaa aatgtatatt tatagaaata
    22621 ttataacact tttccccgct attagcctag aaatgtgtta aaatagaatc aataactttg
    22681 gaggaaatcc tatatgaatc aaaaacaagt gattgcagaa agattggctg ccatccttcc
    22741 gagtttggaa gtggaagcta tctacaatct gctagaaaaa ccaaaatcat cagaaatggg
    22801 cgatattgcc ttcccagcct tctcacttgc taaagtggaa cgcaaggctc cacaggctat
    22861 cgcagcggac atcgttgaaa aactcgatac aactggcttt gagaaggttg tagctaccgg
    22921 tccttacgtc aacttcttct tggacaaggc tgcgatttcc caccaagtct tgacagatgt
    22981 tattactgaa aaagaccaat acggtaaact caacattggt caaggacgca atgtaaccat
    23041 cgacatgtct agcccaaaca ttgctaaacc attctcagtt ggacatttgc gctcaaccgt
    23101 tatcggtgat gcccttgcta acatccacga aaagctaggc tacaagccaa tccgcatcaa
    23161 ccacttgggt gactggggta aacaatttgg tatgttgatt gttgcctaca aactttgggg
    23221 tgacaaggct gcggtcgaag cagacccaat ttcagaactc ctcaaactct atgtgcgtat
    23281 caatgctgag gcggaagaga agcctgagtt ggacgacgaa gcacgtcaat ggttcaaaaa
    23341 attggaagat ggcgatccag aagcacacga gctatggcaa tggttccgtg atgaaagctt
    23401 ggtcgaattc aaccgcattt acgacaaact cgatgtaact ttcgacagct ataatggcga
    23461 agccttctac aacgataaga tggacgaagg tatccaaatc ttagaagaaa aaggacttct
    23521 tcaagaatct aaaggcgcga gaatcgttga ccttgagagc tacaatctgc caccagccct
    23581 catcatgaaa acagacgggg caacacttta catcacacgt gacatggcaa cagctatgta
    23641 ccgcaaacgc acttacgact ttgtgaaaag catctatgtc gttggtcagg agcaaatcaa
    23701 ccacttcaaa caactaaagg ctgtcttgaa agaaatggat ttcgactgga gcgacgatat
    23761 gacccatgtt accttcggtc tggttaccaa ggacaagaaa aagctatcca ctcgtaaagg
    23821 aaatatcatc ctacttgagc caactctaga tgaagctatt tcacgcgccc ttactcaaat
    23881 cgaagctaaa aaccctgacc ttgaaaacaa ggaagaagtg gcgcacgcag tcggtgtcgg
    23941 cgctgttaag ttctacgacc tcaaaaccga ccgtgacaac ggctacgact tcgacctaga
    24001 agctatggtt tccttcgaag gcgaaacagg tccttatgta caatacgcat acgcccgcat
    24061 ccagtctatc ttacgcaaag ccaactttgt accaaacgca gaaaatgact acaaactggc
    24121 tgatgcagaa agctgggaca tcatcaagca catccaaaac ttctcaaacg ttgtagaacg
    24181 tgctggtgac aaatttgacc catcacttat cgccaaatac gctatcaacc tagctcaagc
    24241 cttcaacaag tactacgcac acactcgtat cttggatgaa agcccagagc gtgacagccg
    24301 tctagcactt gcctacgcaa caggacttgt cctcaaagaa gctctacgtc ttctcggcgt
    24361 aaaagcacca gaaaaaatgt aatcaaagcc ttcggccatc agccgaggct ttttttctac
    24421 cacattgcct actctcgttg ccgattcctt atcacaacaa ctccttatca caaatgaaaa
    24481 tcaaaaagat tcatttcaat tacgaatata tagatgggag gtacacgtga tacctctaca
    24541 tctactacac aaggagaaat aatgaaaaca ttcttgagaa gaaaaggaat cgcctgtcag
    24601 cttctagccg ccatttttat tgtcggtatc aatttacaat ccccaccttc agcctcagcc
    24661 aatgcaagag gagatgacta tccctacaca gcagttgatg cagtcgatcc atggagactc
    24721 tacacccgtc aatgtacttc ttttgtagcc tttcgcctca gtaaagtcaa cggttttgaa
    24781 atcccaccag cttacggtaa tgcggatgtc tggggatacc gagcgcagcg tgaagggtat
    24841 cgcgtggata tgagccctgc cgtgggatca gtagcttggt gggaaactcc catgcatgtc
    24901 gcatgggttt ctgcagtaaa tggagatacc gtagagattg aggaatacaa ctacggtgtt
    24961 cgctatacct acggaaggcg agttatcccc aaaaatgccg ttagcggcta cattcatttt
    25021 aaaaacctcg gagcgggaac aaccaactct caacccgccg tagccccaag cggcacctat
    25081 acttttacca gccaactggc catcaaatct caagctagtc tatctagtcc taccctcgat
    25141 tactattatg ctggcgaaag cgtccgttac gacaaggttc tcgaagccga cggacaacgc
    25201 tggattagct atatcagcta ttctggagct cggcgctata tcgccatcca gcctaccatt
    25261 actcaatcta caaacaacag cctaccagca tcaggtagct acaccatcca gtcctactct
    25321 agtgtccgca acaatccaag tctgtccagt cctgaaatca ccttctacgg agctggctca
    25381 gtcgttcgct atgataaagt tattactgcc gaaggtcgca catggattag ctatatcagt
    25441 tactcaggtg ctcgacgcta catcgccatc tcctaatcac aaaaaagaca atatttaaaa
    25501 gcacaatctt tttagactgt gctttttcat taaatatctg tcgaattaat agctgtgctt
    25561 ggtttttcct ttggtttacg cagatggaag aagacggtca caccaaagta aatggcaaat
    25621 aggacaactc gaataatata attcatcatt gcctgcgcct ctactgactg acgcataact
    25681 gaatcagtat aaatttgact caaccctttc tcaccaataa aagcataggt cgaaaatagg
    25741 agagttacaa aaagataacc caggtaggta taagaagcct gctcattttt cttgaggaaa
    25801 agcagcacaa tcgtcgcaat cacagcaagt aataacacaa ctgcaaatgc cttattgaca
    25861 agattcgttt ggaaattgac agactctctc atataggtaa aatatacctc atcaagcccc
    25921 tctacattaa aattctgcaa caattgacgc acaacagcct catcgtactt cgcaaaaaat
    25981 acattaaagc cacgtaatac gctcgcaata gatgacagta caacaaaaat atacaaatga
    26041 atcggtcttt tcataatagc ctcctttttt ctatatttta tactcatatt tttgtattgt
    26101 caatcatata tttcatttta ctacaaatat aattttgtta tactaaattt aaaggaggaa
    26161 aactcatgaa gaaattaccc acctatatcg gagtgattat ttttgtagtt acgctactga
    26221 ttaactggtt attaccaagt cttgctaaag tgctgaatac ttttttcatt tggactatcg
    26281 tagcctgcct actctacacc atctactact ggattcgcta ctggctctat gtccgtaaac
    26341 agagataaca aagactcctc taagttagct acttagagga gttcatttta ttctgacttt
    26401 tcatcaacca aatgcacatt aacccgacga taggtttctg taaggtctag caattccgct
    26461 tcaatctctg gtgtcaattg atctgccgtc attctccaag tccagttacc accaagtgta
    26521 tttggcaagt tcatacgagc cgaaccatcc aaaccaagta ggtcctgcat agtagccacc
    26581 gccataaagg caggtgaacc aaagagcagg cggaaaagag catgactgac cgtttcgccc
    26641 tcacgacgat tgctgtactt atctaagaat gcacgcgatt ctttcgttgt ttcattttcg
    26701 taccagccaa gaatcgtatc attgtcatgg gttcccgtat atgccaccac attattagga
    26761 tggttatgcg gcatttcaat gctgtctcct tctggatcaa aagcaaactg caggactttc
    26821 ataccaggaa aacctgttgt atcacgtaat tggatgacct tgtctgtcac agagcccaaa
    26881 tcctcagcta tgatatttaa gtctccgagt tcacgtttga ttgtatcaaa taattcaaaa
    26941 cctggtgctt cgacacgata gccatttaca gctgtttctt cacccgctgg aatttcccag
    27001 aaggaggcaa agccgataaa gtggtcgata cgtaccatat cgtatatctt aaaggattca
    27061 cgtaaacgag caacccacca agtaaatcca tcatgcttca tcgcttccca atcataaatc
    27121 ggattgcccc aaagctgacc aatttccgaa aaggcatctg gtgggcatcc tgcaaccaca
    27181 ctcggcttgc cttcttcatc cgttttaaag aaatgtggat tagcccacat atcggcagaa
    27241 tcagccgcga tataaatcgg catatcccca acaaactcaa cacctttggc attggcataa
    27301 gcctttaaag ccttccattg tgaaaagaat aaatattgtg taatgcggtg ataatcaatt
    27361 tgatctgcca acaagtgacg ataatattcc aaggtatcgt ggtaacgtaa gcgcgcccct
    27421 tgatcttccc actctgtcca aggtttgaga tcaaaatgct cttttatagc catatactcc
    27481 gcaaaggtat gaatccaaaa gtcattttcc cctaagaaca tccagtaatc ttctggcaag
    27541 ccttgtgcct tcatgttggc aactaccttc tccagtaatg gacggcgagc ataaaaaatg
    27601 gctgcgtaat ctacctctgt aggattctgc ccaaagtcaa caccgtgtaa atcctctgct
    27661 gccagccagc ctttatcaat caatatatcg aaatcaataa aatgagtatt ccctgcaaaa
    27721 gctgaaaatg actggtaagg agaatctcca taactggttg ttcccaaagg taagatttgc
    27781 caatagcgtt gcttagttct taccaaaaaa tcaacaaatt cataagccga ttgtcccatg
    27841 gaaccaattc catatttccc tggtaatgat gaaatgtgca tcagcacacc actctgtctt
    27901 actttcataa gttctcctat ctaatccgct tacacgacgc aaacgttttc tctttttcat
    27961 tatatactga aaacggtaac aaatcaagga attttccttt aattctgttc gttcctatac
    28021 cattccatat ttctcttcat tatatataca aaaaaattat atacaaaaaa attcttatgt
    28081 tttttaaaac tcaaaaaaat ttttaaattt tttataaaaa cgcttgcaaa cggattcaat
    28141 ctggtgtata atgaagtcaa ctcgggaaaa cgtttgcgca atgcagacgt cacacaaaac
    28201 tatttatctt cggagggaag aaaatgaaat acaatctcct taagagcgtt gctcttcttg
    28261 ctgcatcaac tgctgtttta gctgcttgct caaactcagg ttcatcaaca gaggcatcta
    28321 agtctgctga aggtagcaaa gaattgactg tctacgttga ccaaggttat gaatcttata
    28381 tcaacgacgt caaagctgac ttcgaaaaag aaaatggtgt gactgttaca gttaaaactg
    28441 gtgatgcttt gactggtttg gataacttgt cattggacaa ccaatctggt tcagctccag
    28501 acgttatgat ggcaccatac gaccgtgtag gtagccttgg ttctgaaggt caattatctg
    28561 aattgacact tgcagatgat agcaaagcag atgacacaac aactgctctt gtaacaaacg
    28621 gtggtaaagt ttacggttca cctgcggtta tcgaaacact tgttctttac tacaacaaag
    28681 acttgttgac tgaagctcct aagacatttg cagaacttga aacacttgct aaagacagca
    28741 aatacgcatt tgctggtgaa gagggtaaaa cttcagcatt cctagctgac tggacgaatt
    28801 tctactatac atacggactt ctttctggtt acggcggcta tgtattcggt gaaaatggta
    28861 caaatccaaa agacatcgga cttgctaatg aaggtgccat caaagcaatt gaatacgcta
    28921 aaacttggta cgaaaaatgg cctcaaggtc ttcaagacgg tactgctgca aacaacttga
    28981 ttaacactca atttacagac ggtaaagcag ctgctatcat cgaaggtcct tggaaagcag
    29041 cttcatataa agaagctggt gtaaactatg gtgtagcaac aataccaact cttgtaaacg
    29101 gcaaaaacta ctcagcattc ggtggtggta aagcatgggt tgttccagca ggcgctaaaa
    29161 accaagaaat ggctcaaaag tttgttgact tcttgactgc tacagaccaa caaaaagcac
    29221 tttacgacgc tacaaacgaa gttccagcta acactgaagc tcgtgaatat gctgtaagca
    29281 aaaaagacga attgacaact gcagttatca accagtttgc ttcagctcaa ccaatgccaa
    29341 acatctcaga aatgggttca gtttggacac cagctggtaa catgctcttc gaagctgcaa
    29401 gtggttcaaa agacgctaag actgctgcaa cagatgctgt gaaagctatt gcagacgaaa
    29461 ttgctcaaaa acacagcaac tagtcaagtt taaagttgga ctgggagttc tcttcccagt
    29521 ctactttatt acttaacgat aaactgaata gatatagtct tttagtttac ttttagtacg
    29581 aggcaatgag ccgcaggcat aactgaagtt aggcaaggcg agttaacgaa gtaataaaag
    29641 aaaaactaaa tgacgataac atccaccgtc tattcagaag ctatataagg agactatgac
    29701 tatgaaacaa aatccaggta aggcactcct tttgtccctg atccctggtc tcggacaaat
    29761 ctacaataaa caaaaagcca aaggatacat ctttttaggt gttacgcttg ccttccttgt
    29821 ttattttatt gctattgcag ctggtgaatt aggcaacttg attactctcg gtagtgttcg
    29881 tggacaagat aattcgctat tcatgctgat tcgtggttct ttccacttaa ttatcacagt
    29941 tgtctatctc gctttctatg cactcaacct aaaagacgca cgtgataccg cgaaacgatg
    30001 gaattcaggg atgccagtgg ctaccacatt aaaagaaatg gtaaaaggta tctatgagaa
    30061 tggtttccca tatctcttga ttatcccatc atatattgcg atgacctttg ctatcatctt
    30121 cccagttgtc gttacattgt ttatcgcctt tacaaactac gacttcaaac acctgccacc
    30181 aagcgcattg ttggattgga ttggtattac caactttaca aatatctgga aactaagcac
    30241 attccgtaca gcatttggtt ctgtacttgg ctggacaatt atctgggcac tctgcgcttc
    30301 aacagctcaa attgttatcg gtatcttgac agccatcatc gcaaatcaac cattcatcaa
    30361 aggaaaacgt atcttcggtg ttatcttctt gctcccatgg gctgttccgg ccttcgtaac
    30421 tatcttgact tttagtaaca tgttcaacga tagtgtcggc gctattaaca cacaggtatt
    30481 gccattcctg agcaaattcc taccattcat cgacaatttc cttatccctt ggaagaccga
    30541 cccattctgg actaaagttg ctctcattat gatgcaggct tggcttggtt tcccttatat
    30601 ctatgttttg accttgggta ttttgcaatc cattccaaac gacttgtatg aagctgctta
    30661 cattgatggt gcaagtgcca ttcaaaaatt ccgtaacatc acccttccga tgattttagc
    30721 agtagcagct ccaacactaa tcagccaata caccttcaac ttcaacaact tctctatcat
    30781 ctacctcttc aacaatggtg gtcctggtag cgtcggtggt ggagcgggtt caactgacat
    30841 cttgatttca tggatttata aattaaccac aggtacatca cctcaatact caatggcggc
    30901 agcagttaca ttgattatct caatgattgt catcagtatt tccatgattg ccttcaaaaa
    30961 actaaatgct tttgaaatgg aggatgtata agatgaaagt atctgtaaag actagacgca
    31021 tactcaatca gaccttaacc tatctctatc tgattgttct gtctgttatc atcatctatc
    31081 ctctcttgat tacaatcatg tccgccttca agtctggtaa cgtggttgcc ttcaaattgg
    31141 atagcaatat caactttaca ctagacaatt ttagcaagct ctttagcgag actctatacg
    31201 gaacctggta cttcaatacg cttatcattg ctctcttgac aatggttatt caaacaagta
    31261 tagtggtact agcgggttac gcttatagtc gctataactt catcgctcgt aagcagagtt
    31321 tggtcttctt cttgattatc caaatggtac caaccatggc tgctcttacc gccttcttcg
    31381 ttatggccct catgctcaat gcgctcaacc aaagctggtt cctcatcttc ctttatgtcg
    31441 gtggtggtat cccaatgaac gcttggctca tgaaaggcta cttcgatacg gtgccaatct
    31501 cacttgatga atctgcaaaa ctagacggtg ccggtcactt cagacgtttc tggcaaatcg
    31561 tcctcccact cgttcgtcca atgattgctg tacaagcgct ctgggccttc atgggacctt
    31621 ttggagatta catcctatcc aaattcttgc ttcgtgaaaa agaattctat actgtagctg
    31681 tcggacttca aaccttcatc agtgatgtga agaatatgaa gattgcctac tttgcggcag
    31741 gtgccattct tattgccctc cctatcagta tcctattctt cttcctacaa aagaactttg
    31801 tatctggttt aacaagcggt ggcgacaagg gataaccctg tcccaccttt tcccttttta
    31861 ggggaaacat tgatatttat gaaaggtcca acgaatgctc ccatatcctt tttcctattt
    31921 ttctagtatc ttctctccaa gaaatatgtt tgccaatcgt agactaatga acctttggca
    31981 acggttgttt acaacgcttt ttttagtggc gctcttgctc attccgagct ccctacagac
    32041 tgtcaatctc gaaacctatc ctttagaaaa tttcgtagaa ggtgtctatg cacctctgac
    32101 agatcaggtc gtagatgacc tccgtcaata tgcagtcatt gaaaacaacc acctaaccta
    32161 tactggaaat actaactggg agcaagtgac atttggtgat accgttagct ctagttctga
    32221 ctttacttat caattcgcca atcagtctct gactattcgt aaaggaagtg atattctaag
    32281 cgaattgact tatgaaggtt tgaatactga cgattttgct agtaaggaga ccttgactgc
    32341 aaccatctct aaaaaatggt atcaagccaa ccgagcagct gtcggactgt ccatcactct
    32401 tatttcgacc tttattttaa caacaaaact actcttcatc ctactaggag ccagcttctt
    32461 cctctttttg actaaaaagt ctcgtttctt ccattttgaa acgtttgcag agtgctataa
    32521 ttttgctctc aactgtctgg gcctgcctac tcttatagcc tgtctaattg gactatttgg
    32581 tcaacctgtg actacccttc taaccataca aaatatccta tttgtgctat gcttgttatg
    32641 ggtatttttc aaaacaaaat tcagagatga aatctaggag gtctatatgc gtgctaccat
    32701 caaagatgtg gccaaattag ctggtgtctc gccatctaca gttactcgtg tcattcaaaa
    32761 tagctctgcc attagccaaa aaacgaaaga cttggttagg aaagccatgg cggatctcaa
    32821 ctaccatcca aacctcaacg ctcgaagcct agtttctagc tatacacagg ttatcggact
    32881 ggttttgcca gatgactcgg atgttttcta tcaaaacccc ttcttcccta ctgccttacg
    32941 aggaatttct caagttgcgg cagatcataa ttatgccatc caaatctcca caggaaagaa
    33001 tgaagaacaa cgtctagaag cgatttctca gatggtctac ggcaaacgag tggacggcct
    33061 catcttcctc tattccaagc ccgacgatcc attggtacaa ttagctatcc aacacaaatt
    33121 ccccttcctc attcttggta aggcggattc tccattcata tcactagttg ataatgataa
    33181 tatccaggcc ggctttgaag ctaccaacta cttcatcaat aaaggttaca aaaacattgc
    33241 cttcgtcgct ggtaacaaag agttagtcgt atctcaagac cgttatacag gttacaagaa
    33301 cgcccttaaa tcgcacaata ttcccctgga tgaaaacaag gtcaagtttg tgtctggctt
    33361 ccttctcgaa gacagtgcct acaaaatttc taagaaatta ctcaaacaag acctggatgc
    33421 aatcgtcaca actgacactt ccgttgccga aggtgttgtc aaatatctca acgaagtcgg
    33481 agtcaaactt cctatcattt cttttgactc cgtcaagcca aaactagata ttgaagccta
    33541 cgttgacgtc cacgctatta aactaggacg cgtcgcattc aacactctgc accaaatcat
    33601 caatgacaac aaggaagaca agcaagtctg ctaccgacgt gtcattccac ataccattac
    33661 cgaactctaa cttagaaagg agccttttgg ctcatggcat tacgacaatt tcaagcatct
    33721 cttgacgatg tagcaactat tcgcttggtc atggaaaaac gattcgactc cgaacatatg
    33781 agcttctcac ttgaatcaaa tgatgctaca tctcaacttt ttatccattc ctgtctagaa
    33841 gtagataatc tcgtcatcta ttatctaacc agcctccatg cactgacatt ggacaaggac
    33901 tataccatct acgaccaaga ccgtaataaa acagaactcg gctatggtca tatcgttcgc
    33961 tctacacttt ttgaacaaag ttatacatac aatgggcaag acttgggagc aacctatcga
    34021 ccagaggcaa caacctttaa gttatgggca cctatttcta agcaagtttt tcttgttcta
    34081 gaaggaaacc cacatgcaat gacgaaggga gcaaagggag tttgggaaat tactgttgaa
    34141 ggagacctag aagcgcacag ctatcactat ctccacaaag taaacagtga atggatttcc
    34201 gttcacgatc cctacgccct gtcttccaca gccaactcag gtgacagcta cgttatcaat
    34261 ccagataaac ttcataaaat tcgtcgtgct aagacccaac gacctatttc tcaggccatt
    34321 atctatgaaa tgagcgtccg tgatttctca tggcaaaaag aagctgggtt caagcatcgc
    34381 agtcaatttc tcggattgac agaatctcct accatggatg gaatgaagct aggaatggat
    34441 tacatcagag aactaggcgt tacccatatt caattattgc ctgtttatga ttttggcagt
    34501 gtggatgaaa ataaacccca agctgtttac aactggggct acgaccctat gcaatacaat
    34561 ctaccagaag gttcctattc tagccaacca aacgatcctt acgcacgtat tctagagcta
    34621 caagaagcta tccaggccta ccatgatgca gatatttcag ttattatgga cgttgtttac
    34681 aaccacgtct atcatgctga aaagtacgca tttgagctca tcgttccagg ctacttctat
    34741 cgctatgatg accacggcat gcgaacagac gggacattct gcggtaacga cgttgccagc
    34801 gagcgcagta tggtccgcaa ctacatcaaa caatcccttc gccaatggct agaactctat
    34861 ggttttgatg gcttccgttt cgaccttatg ggtattttag atagcgaaac aatcaaccag
    34921 attcaaattg aattatctgc cattcaccca aatgtctacc tctatggtga aggatggaaa
    34981 atggcaacag gcctcgaatt tgaaaagctg gctcaccagt acaatgcgga gcagttacct
    35041 gaaatcagct tcttcaatga cgactaccgt gataccttta agaaactctt gctcaatcca
    35101 aaccgtctag tagataagca attgcacgaa aaggtacaac atctcctgac tggtagccga
    35161 ttaagccatt tcttaacacc tcaacagtcc ctcaactaca tcgaatgcca tgataatgct
    35221 acagcatttg actatttcca tattgagaat ccaaactgga cacctcaaca gcagaaacgt
    35281 gctgcaagtt ttggtctcca gctcatctta atctctcagg gtatggcctt cattcacagc
    35341 ggacaggaat ttttccgtac aaaagatgaa atagataata cttacaatgt ccctgaccgt
    35401 atcaaccatc tggactggac acgagctatt cgttataagg aacatatcga gttcattcag
    35461 gaattaatta ccttccgaaa aaataatcca atactcagcc aggataacta cgaaagtatc
    35521 caagaaactt gtgatttcta ctggttaact gaatatgttc ttcgctatca agtgacaagt
    35581 gaagaaaaga ccattcaatt tatcatcaac tttgcggata gcgactttac ctatgaacgt
    35641 gaaaaagata aggcagttct ctacaactat cctccagtcg aagagcgtga tcagcaagaa
    35701 atcacgattg caggacagag tatttgcatt ttagaagaca aataggactt tagaccgatg
    35761 aaacacgata tagtctgagg tata
//
LOCUS       DASFRC010000003        35531 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.003, whole genome shotgun sequence.
ACCESSION   DASFRC010000003 DASFRC010000000
VERSION     DASFRC010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 35531)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35531)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35531
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.003"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(94..765)
                     /locus_tag="U1087_000085"
     CDS             complement(94..765)
                     /locus_tag="U1087_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM4754614.1"
                     /translation="MDINWQAVFNADIAREAIPQILEGLPYTLSLSLIGFALGTFCGF
                     FVALMRMSKFGPLRWLAMAHISLMRGIPLMVLLFFIYFGLPFMGLQLDAISASIIAFT
                     SMSSAYISEIIRASLSAIDKGQWEAARSLGLRTNVIYRKIIIPQAFRIALPPLSNVLL
                     DMVKSTSLTAMITVPEIFNKAKIVGGAKSDYMTVYICVALIYWVICTLYAFGQLKLEK
                     RLATY"
     gene            complement(856..1734)
                     /locus_tag="U1087_000086"
     CDS             complement(856..1734)
                     /locus_tag="U1087_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000751024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEM4754615.1"
                     /translation="MLKKLLTSALLVSSITLAACSNTSTSTESSSSASQTQWEKVQEA
                     GVLKVATPGTLFPTSYYNDAKELVGYEIDMINEIGKRLKLEIEYQEIGVAEAFTAVDS
                     GKVDISVNNFDMTEARKEKYNFSIPYKYSVGGYIVREDGSSGIEAADLSDWTGKKAGG
                     GAGTQYMKLAEKQGAEPVIYDNVTNDVYLRDVSTGRTDFIPNDYFTQVMAIKWAKANF
                     PDIKVKMGAAQYNPTEQGIVMSKADKSLKEKIDEALEAMKADGTLKAISEKYYAGQDL
                     SVPVENADKLPVIEVE"
     gene            complement(1862..3310)
                     /locus_tag="U1087_000087"
     CDS             complement(1862..3310)
                     /locus_tag="U1087_000087"
                     /EC_number="3.5.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEM4754616.1"
                     /translation="MTWKDATAMAQAVNQKQVSAKELVQETIDRIEKLNPTLNAVISK
                     QYEEALKEAEKEDYLDKPFAGVPFLLKDLGQNEKGQPSSAGSRLLAGRPAGHTDTYVQ
                     RLKDLGFIIVGRTNTPEFGFKNISDASLHGPVNLPLDPSRNAGGSSGGAAAALASGMV
                     SIAAASDGGGSIRIPASFNGLIGLKTSRGRIPVGPKSYRGWQGASVNFALTKSVRDTQ
                     RLLYHFQDYQLEAPFPLAKLSEEEVFGKLSRPLKIAYYIKSPVGSKVSPEAVEAVQKA
                     CHHLANLGHEVVDLSEYPLDGVALMKSFYLMNSVDTAQMFDEIEAVFGRQMTLDDMEV
                     MSWAIYQSGQTIPAKLHSKALLDWDQFGASMARFHEEYDLLLTPTVADVAPKHGQFDL
                     SADLLDRLKHTQNYSMEEQQDLIWQMFEDSLALTPFTQQANICGQPAISLPTYMRADG
                     LPIGIQLTAAKGREDLLLQLADQLQAAGLLHL"
     gene            complement(3320..4147)
                     /locus_tag="U1087_000088"
     CDS             complement(3320..4147)
                     /locus_tag="U1087_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate--protein ligase family protein"
                     /protein_id="HEM4754617.1"
                     /translation="MKSWVENVTIKKYEDRSGLTGLKQGALVWTEVFLREVNRQSNTG
                     ILHFWPMDQTVILGMMDSQVAQLDKGLASIGQAGYSPIIRSLGGLAVVADEGILNVTL
                     ILPNPSGHKLDLRESYQVMVDLIAQALSDFPFEVVSGEVATSYCPGTYDLSIKGRKFA
                     GLAQRIYQEAIAISAYISVSGNQVKRGQVVADFYAASFAPQAVSDRFPQVNPDSMANL
                     SDLVGQALTVEDMKTRIERVLIENGSFLTTFYPSSDNMADFMAFGQTIKQSMEKYGI"
     gene            complement(4274..5410)
                     /gene="dnaJ"
                     /locus_tag="U1087_000089"
     CDS             complement(4274..5410)
                     /gene="dnaJ"
                     /locus_tag="U1087_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002905343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEM4754618.1"
                     /translation="MNNTEFYNRLGVSKDASQDEIKKAYRKLSKKYHPDINKDPGAED
                     KYKEVQEAYETLSDPQKRSAYDQYGPAGANGGFGGGAGGFGGFDGAGFGGFEDIFSSF
                     FGGGGATRNPNAPRQGDDLQYAVNLKFEEAIFGVEREVSYNREATCRTCTGSGAKPGT
                     SPVTCGRCHGSGVINVDTQTPLGTMRRQMTCDVCHGRGKQIKDPCTTCHGTGHEKQAH
                     TVTVKVPAGVETGQRIRLAGQGEAGFNGGPYGDLYVVIQVQPSDKFEREGTTIHYKLN
                     LNFVQAALGDTVHVPTVHGDVDMVIPEGTQTGKTFRLKGKGAPSVRGGAIGDQYVTVN
                     IVTPTGLNDRQKAALKEFAAAGNIDVKPHKKGFFDKVKDAFEDL"
     gene            complement(6235..8058)
                     /gene="dnaK"
                     /locus_tag="U1087_000090"
     CDS             complement(6235..8058)
                     /gene="dnaK"
                     /locus_tag="U1087_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002946936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HEM4754619.1"
                     /translation="MSKIIGIDLGTTNSAVAVLEGTESKIIANPEGNRTTPSVVSFKN
                     GEIIVGDAAKRQAVTNPDTIISIKSKMGTSEKVSANGKEYTPQEISAMILQYLKGYAE
                     EYLGEKVTKAVITVPAYFNDAQRQATKDAGKIAGLEVERIVNEPTAAALAYGLDKTDK
                     DEKILVFDLGGGTFDVSILELGDGVFDVLATAGDNKLGGDDFDQKIIDHMVAEFKKEN
                     GIDLSADKMALQRLKDAAEKAKKDLSGVTSTQISLPFITAGAAGPLHLEMTLTRAKFD
                     ELTYDLVERTKVPVRQALSDAGLSLSEIDEVILVGGSTRIPAVVEAVKAETGKEPNKS
                     VNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSK
                     SQVFSTAADNQPAVDIHVLQGERPMAADNKTLGRFQLTDIPAAPRGIPQIEVTFDIDK
                     NGIVSVKAKDLGTQKEQTIVIQSNSGLTDEEIDRMMKDAEANAEADKKRKEEVDLRNN
                     VDQAIFATEKTLKETEGKGFDAERDQAQAALDELKAAQEANNLDDMKAKLENLNEKAQ
                     ALAVKLYEQAAAAQQAAAGQEGAQTANNAGDDVVDGEFIEK"
     gene            complement(8147..8659)
                     /gene="grpE"
                     /locus_tag="U1087_000091"
     CDS             complement(8147..8659)
                     /gene="grpE"
                     /locus_tag="U1087_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEM4754620.1"
                     /translation="MSEEIKNEEIVEEVEATEEVVETPEKSELDLANERAEEFENKYL
                     RAHAEMQNIQRRANEERQTIQRYRSQDLAKKILPSLDNLERALQVEGLTEDVKKGLEM
                     VQESLIQALKEEGVEEVATDVFDPNLHMAIQTVPATDDCPAEHIAQVFQKGYKLHERL
                     LRPAMVVVSE"
     gene            complement(8796..9830)
                     /gene="hrcA"
                     /locus_tag="U1087_000092"
     CDS             complement(8796..9830)
                     /gene="hrcA"
                     /locus_tag="U1087_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat-inducible transcriptional repressor HrcA"
                     /protein_id="HEM4754621.1"
                     /translation="MITQRQNDILNLIVELFTRHHEPVGSKALQEMIASSSATIRNDM
                     AKLEQLGLLEKAHTSSGRMPSRAGFQYFVNHSLNLEHIDEEDVYQVVKAFDFEAFKLE
                     DILERASTVLADLTGYTSVILDVEPTSQQLTSFDIVQLSSHDALAVLTLDQSKPVTVQ
                     FAIPKNFLTRDLEVLKRLVDERFVDQTVLSIHYKLRTEIPQVVQRYFATTDNVLDLMD
                     YIFSNLFQESVFISGKVASLTYGNLATYQLLDSAQLLAPELRQGLAPDQQTSISVAEH
                     SDSALADVTVIHHRFPIPYRGMGQMSLLGPVDMNYRRQMSLINIISRVLFMKLTDYYR
                     YLSSNHYEVN"
     gene            complement(10052..10747)
                     /locus_tag="U1087_000093"
     CDS             complement(10052..10747)
                     /locus_tag="U1087_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM4754622.1"
                     /translation="MADVRLYISRHGKTMFNTIGRVQGWCDTPLTKAGEEGIRELGLG
                     LKDAGLEFKLAVSSDLGRTVQTMTIAQRELGILGKIPYYQDKRIREWCFGSFEGMYDA
                     ELFQGVLPRLKGTVDATGMTFAEIAAGIQEADTAGWAESWEVLSNRILTGFEAIAQDL
                     KKQGGGNALVVSHGMTIATLAHLLEPERGANIFLDNGSITVLKYENGKLLIEAVGDLS
                     YRKRGAELIAQGK"
     gene            complement(10823..12160)
                     /locus_tag="U1087_000094"
     CDS             complement(10823..12160)
                     /locus_tag="U1087_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018166727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PFL family protein"
                     /protein_id="HEM4754623.1"
                     /translation="MDIRQVRETIEMIEEQNFDIRTITMGISLLDCIDSDIDKAAEKV
                     YTKIVTKAKNLVAVGDEIAAELGIPIVNKRVSVTPIALIGAATDATDYLPLAHALDKA
                     AHEIGIDFIGGFSALAQKGYQKGDEILINSIPQALAQTSKVCSSVNIGSTKTGINMTA
                     VRDMGRIIKETAEASDMGAAKLVVFANAVEDNPFMAGAFHGVGEADVVINVGVSGPGV
                     VKRALEKVRGESFDVVAETVKKTAFKITRIGQLVGNMASERLGVKFGIVDLSLAPTPA
                     VGDSVARVLEEMGLETVGTHGTTAALALLNDAVKKGGVMACNQVGGLSGAFIPVSEDE
                     GMIAAVQNGSLNLEKLEAMTAICSVGLDMIAIPETTPAETIAAMIADEAAIGVINQKT
                     TAVRIIPLGKEGDMIEFGGLLGTAPVMKVNQASSVDFINRGGQIPAPIHSFKN"
     gene            complement(12172..12438)
                     /locus_tag="U1087_000095"
     CDS             complement(12172..12438)
                     /locus_tag="U1087_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002905356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HEM4754624.1"
                     /translation="MKAIVTVVGKDKSGIVAGVATKIAELGLNIDDISQTVLDEYFTM
                     MAVVSSDEKKDFTKLRAELEAYGQALNVKINIQSAAIFDAMHNL"
     gene            12695..14437
                     /locus_tag="U1087_000096"
     CDS             12695..14437
                     /locus_tag="U1087_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM4754625.1"
                     /translation="MKIIKQLWWFFSLEKKAYLIGILSLCLVSLLNLLPASIMGQLID
                     QIASGQLTEHRLLLGVAGLILSALAMYGLRYLWRMNILATSYRLGKIMRARLFDHFMH
                     LSPSFFQQHRTGDLMAHATNDINALTRLAGGGVMSFVDATVTALVTLITMSMSISWQM
                     TLVAILPLPFMTLTTNFLGRRTHENFKASQAAFSELNNKVQEAVSGIKVTKSFGYQEQ
                     ETVAFQEVNQAAFLQNIKTMRYDALFNPAVLFFIGLSYLLTLLVGSHFISQGQVSLGQ
                     LVTFMTYLDLLVWPLMAIGFLVNISQRGDVSYNRIQTLLNISSEVVETDQPLPAPSNG
                     EIVYEISEFAYDNIPVLQDIQFHIKKGQTIGLVGPTGSGKTSLLKLLMREYDVTNGRI
                     LLNQENIKNYKLADLRRLIGYVPQDQFLFATSVTENIRFGNPDLSLDQVEEAARAVYV
                     YEDIQDMPDRFDTMVGEKGISLSGGQKQRLAMARAMILNPDILLLDDSLSAVDAKTEH
                     AILETIKQERLDKTTIITAHRLSAIVHADLILVLEDGKIVERGRHQELLDEKGWYYDT
                     YMMQQLEKEETDAL"
     gene            14427..16175
                     /locus_tag="U1087_000097"
     CDS             14427..16175
                     /locus_tag="U1087_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4754626.1"
                     /translation="MPSKTKQASVFWRLLSYLKAYRLLTVLALSFLLLTTVVRSLIPL
                     LASYFIDHYISSISETAVAILAAYFTLYLLQMVLQYFGNLWFAKVSYSIVRDIRRDAF
                     GRMEKLGMAYFDQTPSGSIVSRITNDTESISEMFSGILSSFISALFIIITTLSTMFAL
                     DWKLTCLIVLFLPLIFLLVDQYRKRSAPIVAKTRSLLSAINSKLAESIEGIRIIQAFS
                     QEERLKEEFEAINQEHLDYASRSMALDSLFLRPALSLVKILAYALLMTYFGLDWSQAG
                     ISAGLIYAFIQYVNRLFDPLLDVTQHFSTLQTSMVSAGRVFTLMDQTIEEPLQLDRGT
                     KIDKGHIVFEDVCFSYDGKRQILDKVSFEVRQGQTIAFVGATGSGKSSIINVFMRFYE
                     FQSGRILIDGQDIRSFSQEELRSAIGLVLQDPFLFHGTIASNIQMYQDISQEEIEEAA
                     RFVDAAPFIEKLPEKYDHLVTERGTTFSTGQRQLLAFARTMASQPKILILDEATANVD
                     SETEQTVQTSLEKMRKGWTTIAIAHRLSTIQDADCIYVLDKGKIIEFGNHEELLAFKG
                     HYHRMYQLQAGQLAAT"
     gene            complement(16270..17367)
                     /locus_tag="U1087_000098"
     CDS             complement(16270..17367)
                     /locus_tag="U1087_000098"
                     /EC_number="5.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 2 isopentenyl-diphosphate Delta-isomerase"
                     /protein_id="HEM4754627.1"
                     /translation="MFYLGEFGLDRKDQHVGLANQQYSATPAKDFTETLFVHHSLPQT
                     KVDEVDISTSVAGLDFAFPFFVNAMTGGSKKTREINRLLGIMGHFGKIALASGSVSAA
                     IKDPSVAETFSVMRRENPYGIIFANLGAHHSVENAKRAVDLLEANAIQIHVNAPQEIV
                     MPEGDRDFTMWLKNIETLVREMEVPVIVKEVGFGMSRETVAQLASVGVKTIDVSGTGG
                     TDFAKIENARRTFNDYTYLEGWGQSTVTSLVEAMSVSEEVRPSLIASGGIKTPLDIVK
                     SLALGADLVGMSNHFLQYVKDGKGHRFDDGLQAIKTYQWQMAEIMTMLGAKNIADLRK
                     KDLVLAPNVQNWCEARGIDWKAYARRSANVS"
     gene            complement(17378..18457)
                     /locus_tag="U1087_000099"
     CDS             complement(17378..18457)
                     /locus_tag="U1087_000099"
                     /EC_number="2.7.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomevalonate kinase"
                     /protein_id="HEM4754628.1"
                     /translation="MKVQVKIPGKLFLAGEYAVVEAGYPAVIAAVDQYLTVTIETSDQ
                     GSLHSSQKADLYLIWERKGNEIFIQDDHPYALIETAMQLTEEYLTAKGYACHGTYSLA
                     VQSDLDDQTSGAKYGLGSSGAVTVATVKALLTYYGHRPDALLTYKLAALAQTKLGMTG
                     SFGDLASSSFGGLIAYHSLDRSWLLGKMAELSLLDLVESDWQGLSISPIQLPQGLDLL
                     VGWTGSAASTDSLVSQMESQKSQAEKEQIHSRFLADSKTCVEQLIVACQTNDLVSARQ
                     AITQNRKLLQDFARGMGLVIETPQLSQLCDLAQTYGAVAKSSGAGGGDCGICLVDSKE
                     QKVAIEKAWQQAGILPLQLKITSRE"
     gene            complement(18459..19484)
                     /gene="mvaD"
                     /locus_tag="U1087_000100"
     CDS             complement(18459..19484)
                     /gene="mvaD"
                     /locus_tag="U1087_000100"
                     /EC_number="4.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diphosphomevalonate decarboxylase"
                     /protein_id="HEM4754629.1"
                     /translation="MTKQIGIARAHTNIALIKYWGKRDKELFLPMNSSLSLTLDAFYT
                     DTKVVFDPELTADEFYLNGMLQKEKEILKISRFLDLFCEYIGERAFARVESLNFVPTA
                     AGLASSASAFAALALATATALDLDLSPATLSTLARRGSGSSTRSLFGGFVEWDMGTGS
                     EDSMAHPIDDADWDIGMVVLAVNTGPKKIASREGMDHTVATSPFYSAWVDTAKQDLVD
                     IKAAIASCDFEKLGQITEHNGMKMHATTLSANPPFTYWSADSLVAQEAVRQVREATGL
                     SAYMTMDAGPNVKVLCRASQMDELVAELAKVFPREKIITSKPGPAAYVLSEDDWQDSQ
                     AAFEKGL"
     gene            complement(19477..20412)
                     /gene="mvk"
                     /locus_tag="U1087_000101"
     CDS             complement(19477..20412)
                     /gene="mvk"
                     /locus_tag="U1087_000101"
                     /EC_number="2.7.1.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mevalonate kinase"
                     /protein_id="HEM4754630.1"
                     /translation="MSVVGKANGKIILMGEHAVVYGQPAIAMPFSAVEIIAQVTAQGE
                     ALTVACDFYKGLVHKMPKIWESLKHAIRFSLYRIGAPTDPAIHIEISSTIPAERGMGS
                     SAAVAVAVARALFAYYEKELTDSELWDIVQSSEKIAHGNPSGIDAATTSGKSPVFFIK
                     HQPIEPFELTLHAHLVVADTGVTGNTLEAISDVADLLEKKPEAIKLVEELGNLTRLAK
                     KDLATDQAELLGGRMNQAHTLLQKLGVSAPSLDKLVSFAQENGALGAKLTGGGRGGCM
                     IALARTAQDAQALAQVLAQAGARQTWIQYLGETND"
     gene            complement(20598..21875)
                     /locus_tag="U1087_000102"
     CDS             complement(20598..21875)
                     /locus_tag="U1087_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM4754631.1"
                     /translation="MNKQTYKEILTIAFPAMGENLLQMLMGVVDSYLVASIGIVALSG
                     VSLANNILAVYQAVFIALAAAVSSRLAQDLGEGGSEGIGGTASESVKFTVFIGLLLGI
                     FSVLAGPIVLTSLGAESEVVQAGGLYLILVGGGAPFLGLMTSLSAILRTLGEPRFPMY
                     ISLLSNVLNALFSAFAVFVLHAGVAGVAIGTVLSRLIGCSLLWSRLPISLKPWTWSFD
                     KELLRLALPATGERLMMRVGDVVVVALITSLGTATVAGNAIGETLTQFNYMPALGIAT
                     ATIILTAKHRQDKAMVRHIFRTSFGLSLLFMFLVAGVTYFAGSFLISLYTKDTQAVQA
                     SQTVLFYAMLGVPFTAGTLIMTALWQGLGNARLPFYVTTIGMWLVRIGIAYLLVTFFK
                     IGLSAIWIATILDNAFRAGVLFFQYRYSKQESI"
     gene            complement(21881..23308)
                     /locus_tag="U1087_000103"
     CDS             complement(21881..23308)
                     /locus_tag="U1087_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4754632.1"
                     /translation="MLSRFSDSRPAVTVKNVALTYSGADKPALQIEDLTIPKGQCVVL
                     CGESGSGKSSFLKVLNGLTPEYYPAQLSGQIFLGDLDLQKSSLEEISRHIASVFQHPS
                     TQFFHSQVLQELVFPCENQGLSREEIENRLAWVMELFGLASLSQRTISSLSGGQQQRL
                     ALAVAAMQGTDVLVLDEPTANLDQEGIAIVEDILKTLKSQGKTIIIAEHRLSYLSQLA
                     DRYLYFQDGQVVTDYLADEFLSRTEECRQDMGLRCYDSEPYGRAIADLADQFVNDKEG
                     LLVENLSVSQKENTLYEIEKLCLAPGQVVGLVGANGSGKTSLARYLVGLAEDKKSRIS
                     WQGQILSSRQRLEKTGFVMQDVRLQLFAESVERELTLGRKNRAVDEHLVARFGLSDLL
                     ERHPVSLSGGEQQRVMIVASLLADKEIFIFDEPTSGLDLRRMQQVASALVDLKMKNKL
                     VLLISHDEELLNLVCDKIVDIKKLK"
     gene            complement(23272..23931)
                     /locus_tag="U1087_000104"
     CDS             complement(23272..23931)
                     /locus_tag="U1087_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HEM4754633.1"
                     /translation="MKLDARTKIILVIFTSFTYGMRLTILENAVLVLGLSLLFWFSGK
                     RKMAIMSPIAYSIFCLLSYITFLPAWLTHLLLVLTYTWPPLLAGHLLLMTTSGYELIH
                     GLRKWHLPEVFLLTLGVMFRFLPAIKQDARTICASLKVRGIFLRKRDVVCKPLQYMEF
                     FLVPLMMSLLRTAQELTVASLTKGLAVSTKSPAYIRSSWTVLDWSLCLCCLGFLILVR
                     L"
     gene            complement(23928..24521)
                     /locus_tag="U1087_000105"
     CDS             complement(23928..24521)
                     /locus_tag="U1087_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MptD family putative ECF transporter S
                     component"
                     /protein_id="HEM4754634.1"
                     /translation="MKKLQVKDLMVTGAFAALYFVCVGLGTLLSLVFDRSGNMMYAPA
                     GAALLAGPVYMLLVAKVGKFGSISLVGAVMACFFFLSGYMTAAFLPSLTFGFLAEMVA
                     KSGHYKQKWTNLFSYIIFSFGNLGPIILMWFMRDAYEANLLARGKSAEYIARVMLDFT
                     PESVLWLSTTIILTALISGLFGQYMLQRYFKQSGYLS"
     gene            complement(24522..26183)
                     /locus_tag="U1087_000106"
     CDS             complement(24522..26183)
                     /locus_tag="U1087_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4754635.1"
                     /translation="MDKKEMPTGVLIPRLLQSMKHLLPRIAVAVCFAVLGQVVTIAIP
                     VMLVYLAFVALTGNPAPLWTLGILILLALLRGGFRYGEHYFGHYVAFHTLAAYRRLIF
                     AKLRSLAPGKLDRQDSGSLLKMIGEDIEALEVFFAHTIAPICTGILVALGLTVYFGLS
                     SWGLALLALVTYALLAIAIPNRFAQQLQPLLKEQNASRKGYVSYFIESLKSMKDLMQF
                     QQTDARFAKLTQKSQEVNGQERKVAQTNFMQYAVSFLVVGLSIMGFAWLTFDLVGSQS
                     LGSATGVALLVSFTSSFAPFLELSRLPLGFKRAMNAGRNIYALLDEKEVERTGDLVEV
                     SVKDIAIEQLDFDYDDRETGLYRNLSVQFEQGGIIGLVGESGAGKSTLMKLIMRWYDW
                     QQGQIRLSGLDSRQVDKAHLQGSFAYVPQVPQIFRQTIRENLLLGRTDVSDEVIMDLA
                     EKCHMKERILAASQGLDTLVEASDFSAGEGQRLELMRALLKNADCYIFDEPTSNLDSL
                     NEARFIQLVKEHCQGMVFLISHRSSTMACADTIFRLEDGQLVKEK"
     gene            complement(26176..27936)
                     /locus_tag="U1087_000107"
     CDS             complement(26176..27936)
                     /locus_tag="U1087_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
                     /protein_id="HEM4754636.1"
                     /translation="MAQEQEKISREKKKALLKRLKERIKPKMKLVYLAAFLSWVQFLM
                     RIISFYLIAQGFVTYYEGGQVDVVQFVLILVGLNAFGYGVALIAKRLQGLGSQFARDS
                     LKQSFFEALLAKDGQFESKATAADVFNVASQGIDSLDTYYSYYMASSLRTQFNCATVL
                     LLVFLIFPLGAVIFILALPLIPVSIIAMQKRSKRIMNRYWGSYMDVGNLFLDDLKGLN
                     TLYSYQADAAYEKTFNEQAEDFRDATMELLSFQLQAVGYMDAVMYLGIGLSGFVAVNS
                     LAAGNLSLFSMLFFVLIATEFFAPIREQGYGMHLVMMNTKMADRIFGFLDSMTAEQEI
                     DSVHVPAFDSLKLEDLAFAYGEKSVLKDISMTMTAGKVYALAGESGQGKTTLAQLLLG
                     RLRADKGAIYLGEQEILGVSQLSLNEQVLYVSGQSTLLNQSIYENLRMACDWSKEDIL
                     AWVDQHGVLQFVKHLPDGLDTIVGDDGAFLSPGQRQQVICARAVLAKRSLYIFDEVTS
                     SVDQDNEGLIYDLINLVAKDALVIIITHKMKQVEQADDILFLSAEGAVTGNHATLYQT
                     SSAYGQLVDQQRELEEAVYG"
     gene            complement(28065..29549)
                     /locus_tag="U1087_000108"
     CDS             complement(28065..29549)
                     /locus_tag="U1087_000108"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006595200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEM4754637.1"
                     /translation="MTLVYQSTRDAKNTVSASQAILQGLATDGGLFTPISIPAVDLDF
                     SVLKDASYQEVAKLILSAFLDDFTADELDYCINNAYDSKFDTPAIAPVVKLKGQYNLE
                     LFRGSTIAFKDMALSILPYLMTTAAKKHGLENEIVILTATSGDTGKAAMAGFADVPGT
                     QIIVFYPRDGVSKVQELQMTTQTGANTHVVAIDGNFDDAQTNVKHMFNDEALRAKLAA
                     KKLQFSSANSMNIGRLVPQIVYYVYAYAQLVKTGEIAAGDKVNFTVPTGNFGNILAAY
                     YAKQIGLPVGKLICASNDNNVLTDFFSTGVYDKNRTFRVTTSPSMDILVSSNLERLIF
                     HLFCNDAAKTAELMEALNTAGQYDIQGADADILSLFAAAFATEEETAAEIKRVYDESN
                     YIEDPHTAVASAVYKQYVEQTGDQTPTVIASTASPYKFPVVAVEAVTGQSGLSDFEAL
                     AKLHEISGVDLPPAVDGLETASVRHNTVVAAADMQAEVERYLGV"
     gene            complement(29964..32615)
                     /gene="adhE"
                     /locus_tag="U1087_000109"
                     /gene_synonym="adhC"
     CDS             complement(29964..32615)
                     /gene="adhE"
                     /locus_tag="U1087_000109"
                     /gene_synonym="adhC"
                     /EC_number="1.1.1.1"
                     /EC_number="1.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000763984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acetaldehyde-CoA/alcohol
                     dehydrogenase"
                     /protein_id="HEM4754638.1"
                     /translation="MADKKVVSPEEKLVEARKHVDELVQKGLVALDEFRKLGQEEVDY
                     IVAKASVAALDKHGELAMHAFEETKRGVFEDKATKNLFACEHVVNNMRHTKTVGVIEE
                     DEVTGLTLIAEPVGVVCGITPTTNPTSTAIFKSLIALKTRNPIVFAFHPSAQESSAHA
                     ARVVYEAAVAAGAPENCIQWITKPSMEATSELMKHDGIATILATGGNAMVRAAYSCGK
                     PALGVGAGNVPAYVEKSANIRQAAHDIVMSKSFDNGMVCASEQAVIIDKEVYDEFVTE
                     FKSYKTYFVNKKEKALLEEYCFGVKANSKNCAEGKLNADIVGRPAAWIAEQAGFSVPE
                     GTNILAAEVAEIGEKEPLTREKLSPVIAVLKVEGRAEGLEAARQMVEFHGLGHSAAIH
                     TEDAELAKEFGTIVRAIRVIWNSPSTFGGIGDVYNAFLPSLTLGCGSYGRNSISDNVS
                     AMNLLNIKKVGRRRNNMQWFKVPSKTYFERDSIQYLQKCRDVERVMIVTDRAMVELGF
                     LDRIIEQLDLRRNKVVYQIFSDVEPDPDITTVYKGTELMRTFKPDTIIALGGGSPMDA
                     AKVMWLFYEQPTVDFHDLVQKFMDIRKRAFKFPELGKKSKFIAIPTTSGTGSEVTPFA
                     VISDKANNRKYPIADYSLTPTVAIVDPALVLTVPAHVTADTGMDVLTHATEAYVSTVA
                     NDFTDGLALQAIKLVFENLESSVKNADFVSREKMHNASTMAGMAFANAFLGISHSMAH
                     KIGGRFHTVHGRTNAILLPYVIRYNGTRPAKTATWPKYNYYKADEKYQDIARLLGLPC
                     STPEEAVAAYAQAVYDLGERIGIQMNLKAQGIDEKELKEHSRELALLAYEDQCTPANP
                     RLAMVDHMQEIIEDAYYGYKERPGRIK"
     gene            33068..34093
                     /gene="adhP"
                     /locus_tag="U1087_000110"
     CDS             33068..34093
                     /gene="adhP"
                     /locus_tag="U1087_000110"
                     /EC_number="1.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase AdhP"
                     /protein_id="HEM4754639.1"
                     /translation="MKAVVVNPESTGVVVVDKELRSLEAGEALVQIEYCGVCHTDLHV
                     ANGDFGKVPGRVLGHEGIGIVTEIAPGVTSLKVGDRVSVAWFFQGCGMCEYCTTGRET
                     LCRTVKNAGYSVDGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTCYKAIKEAHL
                     EPGQWIAIYGAGGLGNLAVQYAKKVFNAHVIAVDINNNKLELAKEVGADVTINGLEVE
                     DVPGYIKEITGGGVHSTVVTAVSKVAFNQAIDSVRAGGYVVAVGLPSEYMDLSIVKTV
                     LDGIKVVGSLVGTRKDLEEAFHFGAMGLVVPVVQKRPVEDAEAVFNEMVAGTIQGRMV
                     LDFCHSH"
     gene            complement(34174..35457)
                     /locus_tag="U1087_000111"
     CDS             complement(34174..35457)
                     /locus_tag="U1087_000111"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HEM4754640.1"
                     /translation="MKLQKPKGTQDLLPQDSAKWQYVENFTRSIFKQYNYAEIRTPIF
                     EHYEVISRSVGDTTDIVTKEMYDFYDKGERHITLRPEGTAPVVRSYVENKLFAPEVQK
                     PAKFYYMGPMFRYERPQAGRLRQFHQIGVECFGSNNPATDVETIAMAYHFFEELGIKD
                     IRLHLNSLGNPESRAAYRQALIDYLTPLKDQLSKDSQRRLEENPLRVLDSKEKEDKIA
                     VENAPSILDYLDEESTAHFEAVKTMLDSLGIAYVIDTNMVRGLDYYNHTIFEFMTEVG
                     GNDLTICAGGRYDGLVTYFGGPETPAFGFGMGIERLILVLEKQGIELPLDTQLDIYIA
                     VLGQEANGGALDLVQAIRKQGFRAERDYLDRKLKAQFKSADVFGAKAIITLGGSEIES
                     GQVVVKNNQTRSQVETSLEALKTDFASILEELEKQ"
BASE COUNT         9623 a         8617 c         7536 g         9755 t
ORIGIN      
        1 aaaaaatagc ttagaatcgc atcattcgag acgttaattc taagctattt ttgattgttc
       61 aaattttaat cggaagacta aaccaacctc tttttagtaa gtcgccaagc gtttttccag
      121 cttgagctga ccaaatgcat aaagggtaca gataacccaa taaatgaggg ctacacagat
      181 ataaaccgtc atataatcag acttggctcc accgactatc ttggccttgt tgaaaatctc
      241 tggtaccgta atcatggctg tcagagaggt acttttgacc atgtctaaga ggacattgct
      301 cagcggtgga agggcaatcc gaaaggcttg gggaatgatg atttttctgt aaatcacatt
      361 ggtccgcaag cccagggaac gcgctgcctc ccattgtccc ttatcaatgg ccgaaagaga
      421 tgcacgaata atttcagaaa tgtaggcact ggacatggag gtaaaggcga taatagatgc
      481 ggagatagca tctagttgta gccccatgaa aggcaatcca aaatagataa aaaagagaag
      541 gaccatgagg ggaattccac gcatgagaga aatatgggcc atagccaacc aacgcaaggg
      601 tccaaactta gacatccgca tgagggctac aaaaaatcca cagaaagtcc ccaaggcaaa
      661 accaattagg gatagggata gagtgtaggg aagtccctcc aaaatctgtg gaatagcctc
      721 tcttgcaata tctgcattaa aaactgcctg ccagttaata tccatatctt ctcctctttc
      781 ctaaaaacca gatagacctt gccagtctgt gactgacaaa gtctatacaa gatgcattta
      841 atttgttacg aggtcttatt caacttcgat aactggcaat ttatcagcat tttcaactgg
      901 tactgatagg tcttgtcctg catagtattt ctcagaaata gctttcaagg taccatcagc
      961 tttcatcgct tcaagagctt cgtcaatttt ttctttcaag cttttatcag ccttgctcat
     1021 gacaatccct tgttcagttg ggttgtactg agctgcaccc atcttcactt tgatgtctgg
     1081 gaagttagcc ttagcccatt taatagccat tacctgtgta aagtagtcgt ttggaatgaa
     1141 atctgtacga cctgttgata catcacgcaa gtaaacatca ttggttacgt tgtcatagat
     1201 aactggctct gcaccttgtt tctcagccaa cttcatgtac tgagtacctg caccaccacc
     1261 agctttctta ccagtccagt cgctcaagtc tgcagcttcg attcctgatg aaccatcttc
     1321 acggacgata taaccaccaa ctgaatattt ataagggata gagaaattat acttttcctt
     1381 acgagcttca gtcatgtcaa agttgttaac agaaatatct accttaccac tgtcaaccgc
     1441 tgtaaaggct tctgccacac cgatttcttg gtattcaatt tccagtttca aacgcttacc
     1501 aatttcattt atcatgtcaa tttcataacc gaccaattct ttggcatcgt tgtagtaaga
     1561 agttggaaag agagttcctg gtgtagcaac tttcaagaca cctgcttctt gtactttttc
     1621 ccactgggtt tggctagctg aagaagagct ttctgtgctt gttgaagtat ttgaacaagc
     1681 tgcaagagta attgatgaaa caagtagggc tgatgtcaac aattttttca acataggttc
     1741 taatctcctt tagaagcttg ggcttctctt ttttcttttt ctaggtgtta acccaccaac
     1801 ttttataggg taacattttt gcagaaattt ggcaagtatt ttatctgaaa aatgaaatct
     1861 cttacaaatg aagcagacca gctgcctgca gttggtctgc caactgcaaa agtaaatcct
     1921 ctcgtccctt ggctgctgtc aattggatac caattggcaa accgtcagcc cgcatataag
     1981 ttggcagaga aatggctggc tggccacaaa tattggcctg ttgcgtaaag ggagttaggg
     2041 ctaggctgtc ctcgaacatt tgccagatca agtcttgctg ctcttccatg gaatagttct
     2101 gggtgtgctt gaggcggtcc agcaaatctg ctgataggtc aaattgtcca tgcttgggcg
     2161 ctacatcagc cactgtcggc gtcaggagca agtcgtattc ctcatggaaa cgcgccatgc
     2221 tggctccaaa ctggtcccag tccaataggg ccttggagtg caatttggct ggaatggttt
     2281 gcccgctttg gtaaatagcc caggacatga cttccatgtc atccaaggtc atctgacgcc
     2341 caaaaactgc ttcgatttcg tcaaacatct gggccgtgtc cacgctgttc atcaggtaga
     2401 aggatttcat cagggccact ccatccagag gatattctga taaatccacc acttcatgcc
     2461 ccaaatttgc caagtgatga caggcttttt gaaccgcttc taccgcttca ggactgacct
     2521 tgctccctac tggagatttg atatagtagg cgatttttag ggggcgagac aattttccaa
     2581 acacctcctc ctcgctcagc ttggcaagag gaaagggggc ttccagctgg taatcctgaa
     2641 aatgatagag cagacgctgg gtgtctcgga cagacttggt cagggcaaaa ttgacagatg
     2701 ctccctgcca gccacgataa gacttaggtc caactggaat ccgaccacga ctggttttga
     2761 gcccaatcaa gccattgaag gaggctggga tgcgaataga cccaccacca tcagatgccg
     2821 cagcaataga gaccatgcct gaagccagtg ctgcagctgc accaccactt gatccaccag
     2881 cattacggct aggatccaag ggaagattga caggaccgtg caggctggca tctgagatat
     2941 ttttaaagcc gaactcaggt gtgttagttc gaccgactat gatgaaaccc aaatctttca
     3001 agcgttggac ataggtgtcg gtatgacctg ctggtcgacc agcaagcagg cgagaacctg
     3061 cagaagatgg ttgacctttt tcattttgcc ccaaatcctt gagcaagaag ggaacccctg
     3121 caaatggctt gtccagatag tcttcttttt ccgcctcttt caaggcctct tcatactgct
     3181 tgctgataac cgcattgagg gtgggattga gcttttcaat cctgtcaatt gtttcttgca
     3241 ccaattcctt ggcagaaacc tgtttttgat tgacagcctg agccatggct gtcgcatctt
     3301 tccatgtcat aagaatctcc tagataccat atttttccat agactgcttg atggtctgtc
     3361 cgaacgccat aaaatcagcc atgttgtccg acgaaggata aaaggtggtc agaaaagacc
     3421 cgttttcaat caagacacgc tcaattcgtg ttttcatatc ctccaccgtc aaagcctgac
     3481 cgaccaagtc tgacagattg gccatcgaat ccggatttac ttgcggaaat ctgtccgata
     3541 ctgcttgcgg agcaaaactt gccgcataaa aatcagccac cacttgccca cgtttgactt
     3601 gattacctga cacactgata taggcagaaa tggcaatagc ctcttggtaa atccgctggg
     3661 ccaatccagc aaacttccgc cccttgatac taaggtcgta ggtccctgga cagtaggaag
     3721 ttgccacctc accactgaca acctcaaagg gaaaatctga aagtgcctgg gcaatcaaat
     3781 ccaccatgac ctgataagac tcccgcaaat caagcttgtg accagaagga ttgggcaaaa
     3841 tcagagtgac atttaaaatc ccttcatctg caacgactgc caaaccgccc aaactccgaa
     3901 taataggact gtagcctgcc tgaccaatac tggctaagcc cttgtccagc tgggccacct
     3961 gactgtccat catccccaga atgaccgttt ggtccatggg ccaaaaatgt aaaattcctg
     4021 tattggactg acgattgacc tcgcgcaaaa agacctcagt ccacaccagt gccccctgtt
     4081 tcaaacccgt caagccagac cgatcttcgt atttctttat ggtcacattc tcaacccaag
     4141 atttcattcg taagcgttct ctttcaaatt actatatctt attttaacac agagcctgtg
     4201 atgcgtcgga aaaaatgccc agaggatttt ctgaaaaaga aaggagactg gagtttccag
     4261 tctcatctta gaattataaa tcctcaaagg catcttttac cttgtcaaaa aatccttttt
     4321 tatggggttt gacatcaata tttcctgctg ccgcgaattc tttaagagct gctttttggc
     4381 ggtcattcaa acctgtcgga gtgacgatat ttactgtgac atattgatca ccaatagctc
     4441 caccacgaac acttggtgca ccttttcctt tgagtcggaa ggtcttacca gtctgggtac
     4501 cttcaggaat gaccatatcc acatcaccgt gaactgttgg cacatgaact gtatctccaa
     4561 gtgctgcttg gacaaagttg aggttcagtt tatagtgaat agtggttcct tcacgttcaa
     4621 acttgtctga aggttggacc tgaatgacaa cgtagagatc tccgtatgga cctccattga
     4681 aaccagcttc accttgacct gccaagcgaa tacgttgacc ggtttccaca ccagctggca
     4741 ccttaactgt taccgtatgg gcttgttttt catgaccagt tccatgacag gttgtacatg
     4801 gatctttaat ttgttttccg cgaccatgac agacatcaca ggtcatttga cggcgcatgg
     4861 tcccaagtgg agtttgggtg tccacattga tcactccaga accatgacaa cgcccacagg
     4921 ttactggact tgttccaggt ttggcacctg aacctgtaca ggttcgacaa gttgcctcac
     4981 ggttatagga aacttcacgt tccacaccaa aaatcgcttc ttcaaatttc aaattgactg
     5041 catattgcaa gtcatcccct tgacgaggtg cattaggatt gcgcgtcgca ccacctccac
     5101 caaagaagct agagaaaatg tcttcaaagc caccgaaacc tgctccgtcg aaaccaccaa
     5161 agccacctgc tcctccgccg aaacctccat tggcaccagc aggaccatac tggtcatagg
     5221 cagaacgttt ttgagggtcg ctcagagtct cataagcctc ctggacctcc ttgtatttat
     5281 cctccgcacc cggatccttg ttaatatctg gatggtattt tttcgaaagc ttccgataag
     5341 ccttcttaat ctcgtcctga gaagcatcct tggaaacccc cagacgattg taaaattcag
     5401 tattgttcat aatgtaagat attaagccgt taagcgactc aaagaaaaat aggaaactgt
     5461 ccgacgatgc cttgcatcta ggtaaagttt atcttttttc aaagagtcgt aggcgtattc
     5521 agttacacca aaatagtcat gcatgaatac tacatataaa cgactgtgtt cgaataaacg
     5581 aacttgtatt cctttctttg aaaattagaa agtagcccgt gttcagttac gaacactttc
     5641 ctttctgtaa aagttagaag ggtatttacc caaaaacaga ggctgagttg caacctctgt
     5701 gattggaaat tttattgacg aatgatttct attcttggaa aaatgtaaac tgagttcgaa
     5761 ctaggaacat cggaaaaatg actttccata ttctagatac tcaaagaaat tcaagactag
     5821 gttaggtaac tggacaaaga ttgaactagg gttcatctag gagagttaac aaagcttagt
     5881 gaaaaatttc gtggctcggg ataaaaaggt ctcctgaacc atttacgacg tgagaaaaca
     5941 aagtcgataa tactttgttt tcgagctagt aagacaccta ggttagccgc aatagcggta
     6001 accgttaact gatgagctac ttttagtagc aatcagtttt ggcgtcctcg cttccgaatt
     6061 tccattctcg agaagatgag aactgagttc gggctaagaa cttcggaaaa aagataactt
     6121 tccatgtcct agatactcaa agaaattcaa gactaggcta ggcaactgga cgaagattga
     6181 actggagttc atcgaggaga gttaacgaag cctagtgaag aatttcgaag agtactactt
     6241 ttcaataaac tcgccgtcta ccacatcatc gcctgcgttg ttggctgttt gggcaccttc
     6301 ttgacctgca gctgcttgtt gtgctgctgc agcttgctcg tagagtttca ctgcaagggc
     6361 ttgagctttt tcgtttaagt tttcaagttt agccttcatg tcgtccaagt tgtttgcttc
     6421 ttgagctgct ttcaactcat caagagctgc ttgggcttgg tcacgttctg cgtcgaagcc
     6481 tttgccttca gtttctttca gagttttctc agtcgcaaag attgcttggt caacattgtt
     6541 acgaaggtcc acttcttcct tacgtttctt atctgcttcc gcgtttgctt ctgcatcttt
     6601 catcatgcgg tcgatttctt catctgtcaa acctgagtta gactggataa cgatggtttg
     6661 ttctttttgc gtaccaaggt ctttagcttt tacagaaaca ataccgttct tgtcgatgtc
     6721 aaatgttact tcgatttgtg gaataccacg aggtgctgct ggaatgtctg tcaactggaa
     6781 gcgaccaaga gtcttgttgt ctgctgccat tggacgctca ccttgaagca cgtggatatc
     6841 aacagctggc tggttatctg ccgcagttga gaagacttgt gatttagaag ttgggatagt
     6901 tgtgttacgg tcgatgagtt ttgtaaagac gccacccatt gtttcgatac caagtgacaa
     6961 tggtgttacg tcaagaagaa cgacgtcttt aacatcacca gtgatgacac caccttggat
     7021 tgccgcaccc atagcaacaa cttcgtcagg gtttacagat ttgtttggct ctttacctgt
     7081 ttcagcctta acagcttcta caacggctgg gatacgagtt gaaccaccga caaggataac
     7141 ttcgtcaatt tctgacaagc taagtcctgc atctgaaaga gcttgacgaa caggaacttt
     7201 tgtacgttct acaaggtcgt aagtcaattc gtcaaatttc gcacgagtaa gagtcatttc
     7261 caagtgaagc ggacctgctg cacctgcagt gatgaacggc aagctgatct gagttgacgt
     7321 tacacctgac aggtctttct tagccttttc agctgcatct ttcaaacgtt gaagggccat
     7381 cttgtcagct gacaagtcga taccgttttc tttcttgaat tctgctacca tgtggtcgat
     7441 aatcttttgg tcaaagtcat caccaccgag cttgttatca cctgctgttg caagtacgtc
     7501 aaagacaccg tcaccaagtt caaggataga tacatcaaat gtaccaccac caaggtcgaa
     7561 taccaagatt ttttcgtctt tgtcagtctt gtccaaacca taagcaaggg ctgctgcagt
     7621 tggctcgttg acaatacgtt ctacttcaag accagcaatt ttaccagcgt ctttggttgc
     7681 ttgacgttgg gcatcgttga agtaagcagg aaccgtgata acggctttgg ttactttttc
     7741 tccaaggtac tcttcagcgt agcctttcaa gtattgaaga atcattgctg agatttcttg
     7801 tggtgtgtat tctttaccgt ttgctgaaac tttttcagaa gttcccattt ttgatttgat
     7861 agagatgatg gtatctgggt tagtcactgc ttggcgtttt gcagcgtcac caacgatgat
     7921 ttcaccattt ttgaaagata caacagacgg agttgtacgg tttccttctg ggtttgcgat
     7981 gatttttgat tcagttcctt caagaactgc aactgctgag tttgttgtac ctaagtcaat
     8041 accgataatt ttagacatgt gtgttacctc tttttaattt actttctttt caagtagttt
     8101 aacgacatct cggtcaggat tctttttttg gggaatagca gagcggctac tctgatacga
     8161 ctaccatagc cggtctcagc aagcgttcat gcagcttgta gcctttttgg aagacttgtg
     8221 caatgtgttc tgctgggcag tcgtctgtgg ctggaactgt ttgaatggcc atgtgaagat
     8281 ttgggtcaaa gacatcggtt gcgacttcct ccaccccttc ttctttgagg gcttgaatca
     8341 agctttcctg taccatttcc aagccttttt tgacatcctc tgtcaagcct tcgacttgaa
     8401 gggcacgttc caagttatcc aaacttggca agattttctt ggccaagtct tgcgaacggt
     8461 agcgttgaat agtttggcgt tcctcgttgg cacggcgttg gatattttgc atttcagcgt
     8521 gggcacgaag gtacttgttt tcaaattcct ccgcacgctc atttgccaaa tccaattccg
     8581 atttttcagg tgtctccaca acttcttctg ttgcttcaac ctcttctacg atttcttcgt
     8641 ttttgatttc ttctgacaag ttgttcacct cttcattttc tattattact ttgaacaata
     8701 ataaattgag ttcgggctag aaactcagaa aagtgaaata gtccagtgga ctgtttcagc
     8761 ctatttttca atcgtttcct tcacgccctc acatcttaat ttacctcata atgattactg
     8821 ctcaaataac ggtagtaatc ggttaatttc ataaatagga cgcggctgat gatattgatc
     8881 aaactcatct gcctgcggta gttcatgtca actggaccga gcaaactcat ctggcccatg
     8941 ccccgatagg ggattggaaa acgatgatga atgaccgtca catctgcaag ggccgagtcg
     9001 ctgtgttctg ccacggaaat gctggtctgc tggtcgggag ccaagccctg ccgcaactct
     9061 ggtgctaata gctgtgcgct atccaagagt tggtaggtag ctagattgcc gtaagtcagc
     9121 gaggcaactt ttccactgat aaagaccgat tcttgaaaaa gattggaaaa gatgtagtcc
     9181 atcaggtcca agacattgtc cgtcgtggca aagtaacgct gcaccacttg gggaatctcc
     9241 gtccgcagct tatagtggat ggataagacc gtctggtcaa cgaagcgttc atccaccagg
     9301 cgtttgagca cttccaagtc cctggtcaaa aagtttttag gaatggcaaa ctggacggtg
     9361 actggtttgg actggtccag agtcaagact gccagagcat cgtggctact gagctgcacg
     9421 atgtcaaagg aagtcaactg ctgactggtc ggctccacat ctaagatgac cgaagtgtag
     9481 ccagtcaaat ccgctaggac tgtactggcc cgctccaaga tgtcctccag cttgaaggct
     9541 tcaaagtcga aggccttgac cacctgataa acatcttctt catcgatgtg ttccagattg
     9601 agcgagtggt tgacaaagta ttgaaaacca gcccgactgg gcatccgtcc acttgatgtg
     9661 tgggcctttt ccagcaaacc caactgctct agcttggcca tgtcattgcg aatggtagcc
     9721 gaacttgaag caatcatttc ctgcaaggcc ttagaaccaa ctggctcatg atggcgcgta
     9781 aataattcaa caatcagatt caaaatatca ttttgacgtt gggtaatcat ctccgctcct
     9841 ttcatgaaca cgattgattt ttagctttag cactctcgta tgacgagtgc taaactatat
     9901 actcccatta tacgccgaaa aaatggattg tcaagagaaa aagacaaaaa attagcactc
     9961 ttttacctag agtgctaaaa atcagtctga ggacctagtt acttccctac ttcaatcaaa
    10021 aaaatcagag aatatccctg atttcatatc tttatttccc ttgggcaatc aattctgctc
    10081 cacgttttcg gtaggatagg tcgccaactg cttcaattaa aagcttgcca ttttcgtatt
    10141 tgaggacggt aattgagccg ttatcgagaa agatattagc accacgctct ggctctaaca
    10201 gatgagccag ggtggcaatg gtcatgccgt gactaaccac aagagcattg ccaccgccct
    10261 gttttttcaa atcttgggca atagcctcaa aacctgtcaa gatacggtta ctcaagacct
    10321 cccacgattc tgcccagcca gcggtgtctg cttcttgaat acctgctgcg atttccgcaa
    10381 aagtcatgcc tgtcgcatca actgtccctt tcaaacgagg caggacacct tggaaaagct
    10441 cggcatcgta catgccttca aaactaccga aacaccattc acggatacgc ttgtcttggt
    10501 agtaagggat ttttcccaaa atccccaact cacgctgggc gatggtcatg gtctgaacgg
    10561 ttcgacccag gtcactggac acggctagtt taaattcaag gcccgcatcc ttgagcccca
    10621 agcccaattc acgaatccct tcctcaccag ccttggtcag cggcgtatca caccagccct
    10681 gcacgcgccc aatggtatta aacatggttt tcccgtgacg agaaatatat aatcttacat
    10741 ctgccattcg tttttctcct tgtcatttct tactattagt ataacaaaaa accgactgct
    10801 tgtggcaatc ggtctacgtt ttttagttct taaagctatg aatcggtgct ggaatctgac
    10861 caccacggtt gataaagtcc acagacgaag cttgattgac cttcataaca ggagctgttc
    10921 caagaaggcc gccaaattca atcatgtctc cttcttttcc aagcggaata atgcggaccg
    10981 cagttgtttt ctggttgata actccaatag ccgcttcatc cgcaatcatg gctgcaatgg
    11041 tttcagcagg cgttgtttct ggaatggcaa tcatatccaa acctacagaa cagatagccg
    11101 tcatagcttc taatttttca aggttgagcg agccattttg caccgctgca atcatgccct
    11161 catcctcaga cacaggtata aaggcacctg acaggccacc gacttggttg caggccatga
    11221 ctccaccctt tttcactgcg tcattgagca gagcaagggc agcagtcgtt ccgtgcgtac
    11281 caacggtttc taagcccatt tcctccaaaa ctcgtgccac tgagtcgcca accgctggcg
    11341 ttggagcaag ggacaggtcc acgataccga acttgacacc cagacgttca ctagccatat
    11401 tgccgaccaa ctgaccgata cgggtaatct tgaaagcggt cttcttgacg gtctccgcca
    11461 ccacatcaaa gctctcacca cgcacttttt caagagctcg cttgaccaca ccgggcccag
    11521 acacgccgac attgatgacc acatccgcct caccgacacc atggaaggca cccgccatga
    11581 agggattgtc ctcgaccgca ttggcaaaga ctacaagttt agctgccccc atatcagaag
    11641 cctccgccgt ctccttgatg atccgcccca tgtcccgcac agccgtcata ttgatacccg
    11701 tcttggtcga gccgatattg actgacgagc agaccttaga ggtttgggcc aatgcctgcg
    11761 gtatagagtt gatgaggatt tcatcccctt tttggtagcc cttttgagca agagctgaaa
    11821 agccaccgat aaaatcgatg ccgatctcat gagccgcctt gtccaaggca tgagctaggg
    11881 gaaggtaatc cgtggcatcc gtcgccgcac caatcaaagc aataggtgtt actgacaccc
    11941 gtttgttgac aatgggaatg cctagttctg ccgcaatctc atcgccgact gctaccaagt
    12001 tcttggcctt ggtgacaatc ttggtataca ctttctccgc agccttgtcg atatccgagt
    12061 cgatacagtc caagagggaa atccccatgg tgatggtccg aatatcgaaa ttctgctcct
    12121 caatcatttc aatggtttct ctaacctgtc taatatccat gaaatctctc cttacaagtt
    12181 gtgcatagca tcaaaaatgg ctgcactttg aatgttgatt ttcacattca aagcctgacc
    12241 ataggcttct agttctgcac gaagcttggt gaaatctttc ttctcatctg acgacaccac
    12301 cgccatcatg gtaaaatact catccaaaac agtttgggaa atatcgtcaa tattgagccc
    12361 taactccgca atcttagtcg caacacccgc aacaattcct gacttatcct taccgacaac
    12421 tgtaacaata gctttcatct gaacacctct tctaaatttt catatatttt atcataaata
    12481 tacagaaaaa ggtaaaaagc ttttgatttc tacctgtatc gtacgtgttt acaactccaa
    12541 ctgtttcttc tattcggcta cggctagagt tgcctagttt ttaagttgca aactttctat
    12601 ttctaccagt ctgtgataca ctagtgtcac cgaattctat tatttgttgg ttgcgacaag
    12661 ctaccaacct ttcttttgtt cagaaaggac atttatgaag attatcaagc aattgtggtg
    12721 gttcttttcc cttgagaaaa aggcctatct gattgggatt ttatcactct gtttggtcag
    12781 cctcctcaat ctccttcccg cttctatcat ggggcagttg attgaccaga ttgccagcgg
    12841 acagttgact gagcatcgct tgctactcgg ggtagctggg ctcatcttgt cagccttggc
    12901 catgtacggc ctccgctatc tttggcgaat gaacattctg gcaacatctt atcgtctagg
    12961 aaaaatcatg agggctcggc tgtttgacca ctttatgcac ctgtctccat ccttttttca
    13021 gcaacatcgg actggggatt taatggccca cgcaaccaat gatatcaatg ccctgacccg
    13081 actagcaggt ggtggcgtca tgtcctttgt tgatgcaacg gtcacagcct tggttaccct
    13141 aattacgatg agtatgagca tttcctggca gatgaccttg gttgcaatcc tccccttacc
    13201 cttcatgact ctaaccacta attttttagg ccgtcgcacc catgaaaatt tcaaggcttc
    13261 acaggcagcc ttttcagagc ttaacaacaa ggtccaggaa gctgtttctg gtataaaggt
    13321 caccaaatcc tttggctacc aagaacaaga aacggtagct tttcaggaag tcaaccaggc
    13381 agccttcttg cagaatatca aaaccatgcg ttacgatgcc ctgttcaacc ctgccgtcct
    13441 cttttttatt ggcctgtcct acctgctgac ccttctggtc ggctctcact tcatctcgca
    13501 aggtcaggtc agtctgggcc aactagtaac cttcatgacc tatttagatc tcctcgtctg
    13561 gcctcttatg gccatcggtt ttttggtcaa tattagccag cgtggtgatg tgtcttacaa
    13621 tcgcatccag acccttctca acatttcttc agaagtcgtt gaaacagacc aaccgctgcc
    13681 tgcaccaagc aatggagaga ttgtctatga gattagcgaa tttgcctatg ataacatacc
    13741 agtcctccaa gacatccagt ttcacatcaa aaaagggcag acaattggcc ttgtggggcc
    13801 aacaggttct gggaagacca gcctgctcaa gctcctcatg cgagaatacg atgtgacaaa
    13861 tggacggatc ttgctcaatc aagaaaatat caagaactac aagctagctg acctacgacg
    13921 attaatcggc tatgtacccc aagaccagtt cctctttgcg accagcgtta ctgaaaacat
    13981 ccgcttcggc aatcccgatt tatctctaga tcaggtagaa gaggccgctc gggctgtcta
    14041 tgtctatgag gatattcagg atatgcccga ccgcttcgat accatggttg gtgagaaggg
    14101 gatttccctt tctggcggac aaaaacaacg gttggctatg gcccgcgcca tgattctcaa
    14161 tccagatatc ctgctcttgg atgactcgct ctcagcggtg gatgctaaaa cagaacacgc
    14221 tattctcgaa accatcaagc aagaacgcct tgacaaaacc accattatca ccgcccatcg
    14281 cctgtcagct attgtccatg ccgatttgat tctggtcctt gaagatggga aaatcgtaga
    14341 acgagggcgt caccaagaat tactagatga aaaaggctgg tattacgata cctatatgat
    14401 gcagcaacta gaaaaggagg aaactgatgc cctctaagac caaacaagcc agtgttttct
    14461 ggcgactttt gtcctatctc aaagcctatc gactgctgac agtccttgcc ttgagctttt
    14521 tgttgctgac taccgtggtc cgcagtctga ttcctcttct agcttcttat tttatcgacc
    14581 actatatttc ctcgatttct gagactgccg tggctattct agctgcctac ttcaccctct
    14641 atctgctcca aatggtgctt caatattttg gaaatctctg gtttgcaaaa gtttcttaca
    14701 gcattgtcag agatattcgc cgggatgctt ttgggagaat ggaaaagctg ggaatggctt
    14761 actttgacca gactcctagt ggctccattg tctcgcgaat caccaatgat acagagagca
    14821 tttcagagat gttttcaggg attttatcca gttttatctc agctctcttt attatcatca
    14881 cgactctttc gaccatgttt gctctggatt ggaaattgac ctgtctgatc gtcctctttc
    14941 ttcccttgat tttcttattg gttgatcaat atcggaagcg gtcagctccc attgtggcca
    15001 agactagaag tctgttgagt gccatcaaca gcaaactggc agagagcatc gaggggattc
    15061 ggattatcca ggccttttct caagaggaga ggctaaagga agagtttgag gctatcaacc
    15121 aggaacatct ggactatgcc agtcgttcca tggccttgga cagtctcttt ctccgccctg
    15181 ccctatcact tgttaagatt ttggcctatg ctcttctcat gacctatttt ggtttggact
    15241 ggtcacaggc tggaatttct gctggtctta tttacgcttt tatccagtat gtcaatcgtc
    15301 ttttcgatcc cttgctggat gtcacgcagc atttttccac cctccaaacc tctatggtat
    15361 ctgccggacg ggtctttacg ctcatggacc agaccatcga ggagccacta cagcttgacc
    15421 gagggaccaa gattgacaag gggcatattg tctttgagga tgtttgtttt tcctatgacg
    15481 gcaagcggca aattctggat aaggtttcct ttgaagtgag acagggccag accatcgcct
    15541 ttgtgggtgc tacagggtca ggcaagtctt ctatcatcaa tgtctttatg cgtttctatg
    15601 agttccaatc tggacggatt ttgattgacg gtcaggatat tcgtagcttt tcgcaagaag
    15661 aattgcggtc cgcgattggc ttggtcctgc aagatccctt cctctttcac ggaaccattg
    15721 catccaatat ccagatgtat caggatattt ctcaggagga gattgaggaa gcggctcgat
    15781 ttgtggatgc tgctcccttt attgagaaac ttcctgagaa atacgaccac ctggtcactg
    15841 agcggggcac caccttttcg acaggtcaac ggcaacttct ggcctttgca cgcaccatgg
    15901 ccagtcagcc taagattctc attttagacg aggctaccgc caatgtcgat tcagagacag
    15961 agcaaacggt gcagacctct cttgaaaaaa tgcgaaaagg gtggacaacc attgcgatcg
    16021 cccaccgttt atcaactatt caagatgccg actgtatata tgtcttggac aaggggaaaa
    16081 tcatcgagtt cggcaatcac gaagaacttc tagccttcaa ggggcactac caccgcatgt
    16141 accaattaca agcagggcag ttggcagcga cctagaaatc tgtctattcg aaaagccaag
    16201 ttccaaaatg gacctggctt ttttattttt ctacattatt gagaactgaa gacatcaatc
    16261 tatctctctt taactcacat tcgctgaccg acgggcatag gctttccagt cgatcccacg
    16321 cgcttcgcac cagttttgta catttggagc caaaaccaaa tctttcttgc gaaggtctgc
    16381 aatattctta gcccccaaca tggtcatgat ttcagccatc tgccattgat aagtcttaat
    16441 agcctgcaag ccgtcgtcaa aacgatgccc cttaccatcc ttgacatact ggaggaaatg
    16501 gttggacata ccaacaaggt ctgcaccgag ggccaatgat ttaacaatat ctagtggcgt
    16561 cttaatacca ccagatgcaa tcaggcttgg gcgaacttct tcagaaacag acatggcttc
    16621 taccaaggaa gtcacggtag actgccccca accttctaga taagtataat cattgaaggt
    16681 acggcgggca ttttcaatct tggcgaaatc cgtcccccca gtaccagata catcaatggt
    16741 cttgacaccg acagaagcca gctgggctac tgtttcacgg ctcatgccaa aaccaacttc
    16801 cttgacgatg acaggtactt ccatctcacg tacaagggtt tcaatattct tcaaccacat
    16861 agtaaagtca cggtctccct caggcatgac aatctcctgg ggggcattga catggatttg
    16921 aatggcattg gcctccaaca aatccaccgc tcgcttggca ttctccacac tatgatgggc
    16981 acctaggttg gcaaagataa tcccgtaagg attttcccga cgcatcacgg agaaggtttc
    17041 cgcaacagac ggatccttaa tcgccgcact gaccgaacca gaagccagag caatctttcc
    17101 aaaatgcccc ataattccca acaagcgatt gatttcgcgg gtcttcttgc ttccgccagt
    17161 catggcattg acgaagaaag gaaaggcaaa atccaaacca gccacactgg tcgaaatatc
    17221 cacctcatcc accttggtct gtggcaggga atgatggaca aacagagttt ctgtaaagtc
    17281 cttggccggc gtggcactat attgctgatt ggccaagcca acgtgttgat ccttgcggtc
    17341 taaaccaaat tctcctagat aaaacatagg gttctcctta ttctctactt gtgatcttta
    17401 gttggagtgg aagaatgccg gcttgttgcc aagccttctc aatcgctact ttttgttcct
    17461 tactgtctac caagcaaatg ccgcagtcac ctccgcctgc accagatgat ttggccaccg
    17521 ctccataagt ctgagccagg tcacagagtt gactcagttg aggcgtttca atgaccaaac
    17581 ccattcctct cgcaaagtct tgtaagagct tgcggttttg agtaatagcc tgtctagctg
    17641 ataccaagtc atttgtctga caggctacta tcaactgttc tacacaggtc ttggagtcgg
    17701 ctagaaacct gctatgaatt tgctcttttt cagcctgact tttttggctt tccatctggg
    17761 aaactagact atccgtcgaa gccgccgacc ctgtccatcc caccaagagg tctaaacctt
    17821 ggggtaactg gatagggctg atagacaaac cttgccaatc actttccacc agatccagca
    17881 gggacagctc tgccattttc cctaaaagcc aagaacggtc cagggaatga taggcgatca
    17941 agccgccaaa actggaggac gccaaatccc caaaggagcc tgtcatgcct aacttggtct
    18001 gggccaaggc tgccagcttg taggtcagga gggcatctgg tcggtgaccg tagtaggtca
    18061 acaaggcctt gaccgtcgca accgttactg cccctgacga ccccagacca tacttggcac
    18121 ctgaagtctg gtcatccagg tcagactgga ccgctagact gtaagttcca tgacaagcat
    18181 agcccttggc tgtcagatat tcctcggtta gctgcatagc tgtttcaatc agagcatagg
    18241 gatggtcatc ttggatgaaa atctcatttc ccttacgctc ccagattaga taaagatctg
    18301 ccttttgact ggaatgaaga ctgccttggt cacttgtttc aatggtgacg gttaggtact
    18361 ggtcaaccgc cgcaatcacc gcaggatagc cagcttcgac aactgcatat tcccctgcca
    18421 gaaagagttt tccaggtatc tttacttgta ctttcatgct acaagccctt ttcaaatgct
    18481 gcttgtgagt cctgccaatc gtcttcgctg agaacataag cggcaggacc aggcttacta
    18541 gtgatgattt tctctcttgg gaagactttg gccaattcag ctactagctc atccatttga
    18601 cttgctcggc agaggacctt gacatttggt cccgcatcca tggtcatgta ggctgataag
    18661 ccagttgctt cacgaacctg acggactgcc tcttgagcca ctaggctatc ggctgaccaa
    18721 taggtaaagg gtggattggc agagagcgtt gttgcatgca ttttcatgcc attgtgctct
    18781 gtaatctgac caagtttttc aaaatcacag ctagcaatag ctgccttgat gtccaccaag
    18841 tcttgtttgg ctgtatctac ccaggctgag taaaatggtg aagtggcaac tgtgtggtcc
    18901 attccctctc gactagcaat ctttttcggt ccggtattga ccgccaagac gaccatgccg
    18961 atatcccaat ccgcatcgtc aatggggtga gccatagaat cttccgaacc cgttcccata
    19021 tcccactcaa caaatccacc gaataggcta cgggtgctag agccagaacc cctgcgagca
    19081 agggttgata gggtggctgg tgacaaatct aaatccaagg cagttgcggt tgcaagtgca
    19141 agggctgcga aggctgatgc tgagcttgcc aaaccagctg cagtcggaac aaaatttaga
    19201 ctttccactc gggcaaatgc cctttcacct atatattcgc aaaacaaatc caaaaatcga
    19261 gaaattttta aaatttcttt ttctttttgt aacattccgt tgagatagaa ctcatcagca
    19321 gttaattctg ggtcaaaaac gaccttggta tccgtataaa atgcgtcaag ggtcagggat
    19381 agactagaat tcatgggtag gaataattcc ttatcgcgtt ttccccagta tttaatcaag
    19441 gcaatattag tatgggcacg ggctatgcct atttgtttag tcattggttt ctcctaagta
    19501 ctgtatccag gtttggcggg cacctgcttg ggcaagaact tgggcaagag cttgggcatc
    19561 ttgggctgtt cttgccaggg caatcatgca accgcctcgt ccgccaccag ttaatttggc
    19621 tccgagggct ccattttctt gggcaaagct gactagctta tccaggctgg gagcagacac
    19681 gcctaatttt tgcaggaggg tatgggcttg gttcattctg ccgcctagaa gctctgcctg
    19741 gtctgtggct aaatctttct tggccagtcg ggtcaagttc cccagttctt ctactagctt
    19801 gatagcctct ggctttttct ccaacaaatc agccacgtct gaaatggctt ctaaggtgtt
    19861 tcccgtcaca cctgtatcag ccactaccaa atgggcatga agtgtcagct caaaaggttc
    19921 gatgggctgg tgcttgataa aaaagacggg agacttgccg ctggtggtcg ccgcatctat
    19981 gcctgatgga ttgccgtggg caattttttc cgaagactgg acgatgtccc agagttcgct
    20041 gtcggtcagt tctttttcat agtaggcaaa gagggcgcgt gctactgcaa ctgccacggc
    20101 tgcactggag cccataccgc gctcggcagg aatggtggaa ctaatctcga tatgaatagc
    20161 tgggtctgtc ggtgctccaa tacgatagag cgagaagcgg atggcatgct tgaggctttc
    20221 ccagattttt ggcatcttgt gcactaagcc tttatagaag tcacaagcaa cagtcagcgc
    20281 ttccccttga gcagttacct gagcaataat ttcaacagca gaaaaaggca tagcaattgc
    20341 tggttgccca tagaccaccg catgctctcc catcaaaatg atttttccat tcgcttttcc
    20401 tactaccgac atacttttct ccttatacaa tcactactat tataccattt ttacataaga
    20461 atagaacaca cgaaaacagc cgaccgcagt cgactgttct ctaggagatt atatgaaaaa
    20521 gaaattcgct atttctagct tgaatatagt atatagctac aaacttaaaa gaaactgaaa
    20581 attttcttag ctttatctta aattgattct tgttttgaat acctatactg aaaaaatagc
    20641 acccctgctc ggaaggcatt atctaaaatc gttgcaatcc aaatggctga caaaccgatt
    20701 ttaaaaaatg ttacaagtaa ataagctatg ccaatccgca ctagccacat accgatagtt
    20761 gtgacataaa agggtaatct agcatttccc aaaccttgcc aaagagctgt cataataaga
    20821 gtgccagctg taaagggaac tcccaacatg gcataaaata atactgtttg actagcttgt
    20881 accgcttgag tatccttagt ataaagactg attaggaaag accccgcaaa ataagtcaca
    20941 ccagccacca aaaacataaa cagcaaagaa aggccaaagc ttgttcgaaa aatatgtcga
    21001 accatagcct tatcctgtct gtgtttcgct gtaaggatga ttgtagcggt agcaatccct
    21061 aaagccggca tatagttaaa ctgcgtcagg gtttctccaa tcgcatttcc agctaccgtc
    21121 gctgttccta agctggtaat caaagctacg actaccacat ctcccacccg catcatcaac
    21181 cgttcaccag ttgctggcag ggcaagtcta agcagttctt tatcaaagga ccaggtccat
    21241 ggttttaaag aaattggtaa gcgagaccaa agcaggctac aaccaatcaa ccgcgataag
    21301 accgtgccaa tcgcaactcc agctacacct gcatgaagca caaagactgc aaatgctgaa
    21361 aatagtgcat ttagaacgtt tgagagcagg ctgatataca taggaaaacg tggttccccc
    21421 aaggttcgta agattgcact caaacttgtc atgagtccca aaaaaggtgc tcccccacca
    21481 accaatatca aataaagacc tccagcctgt accacttctg actctgcccc caagctagta
    21541 agtactattg gacctgccag aactgaaaaa attcctaaaa ggagaccgat aaaaactgta
    21601 aacttgacac tttcactagc agttcctcca ataccttctg aacccccttc acccaaatcc
    21661 tgagccaaac gagaagacac agctgctgct agggcaataa aaaccgcctg atagacggct
    21721 aaaatattat tagcaaggga aactccagac aaagctacaa tgccaatact ggctactaga
    21781 taagagtcta ctacccccat taacatctgg agaaggtttt cccccatggc tggaaaggca
    21841 atggttaaaa tttctttata ggtttgtttg ttcataatct ctatttcaac tttttaatat
    21901 ctactatttt atcacaaacc agattcaata gctcttcatc gtgagaaatt aacaaaacca
    21961 acttattctt catttttaag tctactaaag cggaagcaac ttgctgcatt cgtctcaaat
    22021 ctaagccgct cgtcggttca tcaaaaataa aaatttcctt atctgccagt aagctagcta
    22081 ctatcatcac gcgctgttgt tcaccgcccg ataaactgac cggatgtctc tccaacaaat
    22141 ccgataggcc aaaacgagct accaaatgtt catcgacagc tctatttttc cttccaagag
    22201 taagttctcg ctcaacactt tccgcaaata gttggagtcg aacatcctgc ataacaaagc
    22261 ctgttttttc caatctctgg cgactagata agatttgacc ttgccaagaa atcctactct
    22321 tcttatcttc cgctaaaccg accagataac gagcaaggct tgtttttcca gaaccattcg
    22381 ctccaaccaa acccaccacc tgtcctggtg ccaagcagag tttttcaatc tcgtagagag
    22441 tattctcttt ctgacttacc gataaatttt caacaagtaa accctcttta tcattaacaa
    22501 actggtctgc cagatccgct attgcccgcc cataaggctc cgagtcataa caacgcagtc
    22561 ccatatcctg acggcattct tctgtccgac ttaaaaactc atctgctaga taatccgtca
    22621 ccacttgccc atcttgaaaa tataaatagc gatctgccaa ttgactgaga taagacagtc
    22681 tatgctcggc aataataatg gtcttgcctt ggctttttaa agttttcaag atgtcctcta
    22741 caatcgcaat cccttcctga tctaggttgg cagtcggctc atctaaaacc aagacatctg
    22801 tcccttgcat ggctgcaacg gccaaggcta gacgttgttg ctgaccacct gatagactgg
    22861 aaatcgttcg ctggctaaga gaagccaaac caaataattc cataacccaa gccaggcgat
    22921 tctcgatttc ttctcttgac aaaccctgat tttcacaagg gaaaaccaat tcctgcaaga
    22981 cctgactatg aaaaaattga gtagacggat gctgaaagac tgaagcaatg tgccgagata
    23041 tttcctccag actagatttt tgtaaatcca agtcccctaa gaaaatttgt cccgaaagct
    23101 gagcaggata atattctggc gtcaaaccat ttaacacctt gagaaaacta gacttcccag
    23161 agccactctc cccacataaa acaacacact ggccttttgg aatggtcaga tcctctatct
    23221 gcaaggctgg tttatctgct cctgaataag ttaatgctac attttttacc gtcacagccg
    23281 gacgagaatc agaaaaccga gacaacataa acaaagactc caatctagca cggtccaaga
    23341 cgaccgaata tatgcaggtg atttcgtaga tacagccaaa ccttttgtca gactggctac
    23401 tgtcaattcc tgagctgttc gcaagagaga catcatcaag ggaaccaaga aaaactccat
    23461 gtactggagt ggcttacaaa ccacatctct cttccgtaaa aaaattcctc taaccttcaa
    23521 agaggcacaa atcgtacgag catcctgttt aatggcaggt aggaaacgaa acattactcc
    23581 caacgtcaaa agaaatacct ctggtaggtg ccatttccgc aagccatgaa tgagttcgta
    23641 accacttgtc gtcatcagta atagatgtcc tgccaaaagc ggaggccatg tataggtcaa
    23701 tacaagcaac aaatgcgtca gccatgctgg taaaaatgta atataggaca acagacaaaa
    23761 aatagaatag gctatcggac tcattatagc cattttccgc tttccagaaa accagaaaag
    23821 caggctaagg cctaagacca gcactgcatt ttctaatatt gtaagcctca tcccataggt
    23881 aaaactagtg aagatgacga gaataatttt tgtacgagca tctaatttca tgaaagataa
    23941 cctgattgtt taaaatagcg ctgaagcata tattgaccaa acaaaccact gataagagct
    24001 gttaagataa tggtcgttga caaccatagc acactctctg gagtgaaatc aagcatgaca
    24061 cgagcgatgt attctgccga ttttccacgt gccaaaagat tggcctcata ggcatctcgc
    24121 atgaaccaca taagaataat aggtcctaag tttccaaaag agaaaatgat atagctaaaa
    24181 agattggtcc atttttgttt atagtgacct gacttcgcta ccatttctgc caaaaaacca
    24241 aaggtcaaac ttgggagaaa ggccgctgtc atatagcctg acaggaaaaa gaagcaggcc
    24301 atgaccgcac ccaccaaact gatggagcca aatttaccaa ccttagctac caataacata
    24361 taaacaggtc ctgccaaaag tgctgctcca gcaggtgcat acatcatgtt acccgaacga
    24421 tcaaaaacca agctcaacaa ggttcctaga ccaacacaaa caaagtagag ggcagcaaaa
    24481 gcccctgtta ccatcagatc ttttacttgt aatttcttca tttatttttc ctttactaat
    24541 tgtccgtctt ccaagcggaa aatggtatcc gcacaagcca tggtcgagct tctatgggaa
    24601 atcaagaaga ccatgccctg acaatgttcc ttaaccagct ggataaagcg ggcttcattg
    24661 agcgaatcta ggttactagt tggctcatca aagatatagc agtccgcgtt tttgagcaag
    24721 gcccgcatga gttccaagcg ttgtccctct cctgctgaaa agtcactggc ttccacgagc
    24781 gtatccaagc cctgcgatgc tgccaaaatc cgttctttca tgtggcattt ttctgccaag
    24841 tccatgataa cttcatccga cacatccgtc cgccccaaga ggagattttc ccgaatggtc
    24901 tggcggaaga tttgtggcac ctgtggtaca taggcaaagg atccttgtaa atgagcctta
    24961 tctacctgcc gactatccaa gccagacagg cggatttgac cttgctgcca gtcataccac
    25021 cgcatgatta atttcattaa ggtggatttt cctgcaccgg actcaccgac caagccaata
    25081 atccccccct gttcaaactg aacagacagg ttgcgataga gccctgtttc tcggtcatca
    25141 tagtcaaagt ccagttgctc aatggcaatg tctttcacgc tgacctcaac caagtcacct
    25201 gttcgctcta cttctttttc atccaaaaga gcatagatat tgcgaccagc attcatggct
    25261 cgcttgaaac caagaggcag acggctgagt tccaagaagg gagcaaagga gctagtgaaa
    25321 gaaaccagca gagccacacc agttgccgag cccaaactct gactacccac caaatcgaag
    25381 gtcagccagg caaagcccat gatagacaga cctaccacca agaaggaaac agcatactgc
    25441 atgaagttgg tctgggcgac ctttcgctcc tgaccattga cctcttggct tttctgcgtc
    25501 agcttggcaa aacgagcatc tgtctgctgg aactgcatga ggtccttcat gctcttgaga
    25561 ctttcgataa agtaggaaac atagccctta cgactggcat tttgctcctt gagcaagggc
    25621 tgtaactgct gagcaaaacg atttggaata gcaatcgcca acagagcata ggtcaccaga
    25681 gccagcaaag ccaaacccca gctggataga ccgaaataaa ccgtcaaacc aagtgccacc
    25741 agaatccctg tacaaatggg tgcaatggta tgggcaaaga aaacttccaa ggcctcaatg
    25801 tcctccccaa tcatcttaag caggctacca ctgtcctgcc ggtccaattt cccaggagcc
    25861 aaggaccgca attttgcgaa aatcaagcga cggtaagccg ccagcgtatg aaaggccaca
    25921 taatgaccaa agtaatgctc accatagcgg aagcccccac gtaaaagagc taggagaatg
    25981 aggattccca aggtccatag cggagcagga ttgccagtaa gggctacaaa agccagatag
    26041 accagcataa ctggaatagc aatggtcacc acctgtccca agaccgcaaa gcaaaccgcc
    26101 accgcaatcc gtggcaagag gtgcttcatg gactgcaaga gtctcggaat cagcacacct
    26161 gttggcattt ctttcttatc cataaactgc ttcctccaat tctctttgtt gatcgaccag
    26221 ctgaccatag gccgagctag tctgataaag cgtggcatga ttgcctgtca cagctccctc
    26281 cgcagacagg aagaggatgt catctgcctg ctccacttgt ttcatcttat gggtaatgat
    26341 gatgacaagg gcatccttgg ccaccaagtt tatcaaatcg taaatcaagc cttcattgtc
    26401 ctgatcgacg ctggacgtca cctcgtcaaa gatataaagg gagcgttttg ccaaaactgc
    26461 acgggcacag ataacctgct ggcgttgacc aggcgacaag aaagcaccgt catcgcccac
    26521 aatcgtgtct aacccgtctg gcaaatgctt aacaaactgc aagaccccat gctgatctac
    26581 ccaagccaag atgtcctcct tggaccagtc acaagccatg cgtaaatttt catagatcga
    26641 ctggttaagc aaggttgact ggcccgacac atagaggacc tgctcattca gagataactg
    26701 actgacacct aaaatctcct gctcacccaa gtaaatcgct cccttatccg cccgcaagcg
    26761 tcccaagagc agctgggcca aggtcgtttt cccctgccct gactcacctg ccaaagcata
    26821 gacctttccc gctgtcatgg tcatagaaat gtcttttaaa actgactttt ctccgtaggc
    26881 aaaggccaaa tcttctagtt ttagactgtc aaaagcaggc acatggacag aatcgatttc
    26941 ctgctccgct gtcatactgt ccaagaaacc aaagatgcga tccgccatct tggtattcat
    27001 catcaccaag tgcataccgt agccctgctc acgtatgggt gcaaaaaact ccgtcgcaat
    27061 gaggacaaag aaaagcatac taaagaggga gagattgcct gccgctaggc tattgaccgc
    27121 cacaaaacca gacaagccaa tccccagata catgaccgca tccatgtagc ccaccgcttg
    27181 tagctgaaag ctgagtagct ccatggtcgc atcgcggaag tcctccgcct gttcattgaa
    27241 ggtcttttca taagccgcgt ccgcctgata ggaataaagg gtattaagcc ccttgagatc
    27301 gtccaggaaa agattgccca catccatgta ggatccccag tagcgattca tgatccgctt
    27361 ggaccgcttc tgcatagcga tgatggaaac gggaatcaga ggcaaggcca agatgaaaat
    27421 aaccgcaccc agcgggaaaa tcagaaaaac cagcaaaaga actgtcgcac agttgaactg
    27481 ggtccgcaag gaagaagcca tgtagtagga ataataggta tccaggctat caatcccctg
    27541 tgaagcgacg ttaaagacat ccgctgctgt cgcttttgac tcaaactgac cgtccttggc
    27601 caaaagtgcc tcaaagaaag actgcttgag tgaatcccgt gcaaactggg aacccaagcc
    27661 ctgcaaacgc ttggcgatca aagccacacc atagccaaaa gcattgagac ctaccaagat
    27721 gaggacaaac tgtaccacat caacctggcc accctcatag taggtcacaa agccttgagc
    27781 aatcaggtag aaggaaataa tccgcatcaa aaattgcacc caggatagaa aggctgccaa
    27841 ataaaccagc ttcatcttgg gtttgatgcg ttctttgagc ctcttcaaga gggctttttt
    27901 cttttctctg gagattttct cctgttcttg tgccatacgc cacctcatct acaagtattc
    27961 ctatatagta tatcattctt tgaattatct gtaaatttta atttaaacag caaaaagaaa
    28021 acaaactgtt caaaatgagc agtttgtcat aaaatgaatc gaaattaaac acccaaatag
    28081 cgctctactt cagcctgcat atcggcagct gcaacgacgg tattgtggcg gacagatgcc
    28141 gtttccaagc cgtccacagc tggtggcaag tctacacctg aaatctcatg caattttgca
    28201 agggcttcaa agtcagacaa acctgactgg cctgtcacag cttcaaccgc aactactggg
    28261 aacttgtaag gactagcagt tgatgcaatc actgtcggag tctgatcccc tgtttgctcc
    28321 acatactgtt tatagacagc tgaggcaaca gccgtatgtg gatcttcaat gtagtttgac
    28381 tcgtcataga cacgcttgat ttccgcagcg gtttcttctt ctgtcgcaaa ggcggcagca
    28441 aagagagaga ggatatccgc gtcagcccct tgaatatcat actgaccagc tgtgttcaag
    28501 gcttccatca gctcggctgt ttttgcagcg tcattgcaaa agagatggaa aatcaagcgc
    28561 tccaagttag aggacaccaa gatgtccatg gacggactag tcgtcacgcg gaaggtacgg
    28621 ttcttgtcgt aaacgcctgt cgagaagaag tcggttagga cattgttatc gttggacgca
    28681 cagatgagct tgccaactgg cagaccgatt tgtttggcgt aataagctgc caagatgttt
    28741 ccaaagtttc ctgttggaac ggtgaagttg accttgtcgc ccgccgcaat ctcaccagtt
    28801 ttaaccagct gagcgtaggc atagacatag tacacaatct gtggcaccaa gcggccgatg
    28861 ttcatggagt tggcagatga aaactggagt ttcttagccg ccaacttggc acggagtgcc
    28921 tcatcattga acatgtgttt gacatttgtc tgggcatcgt cgaagttacc gtcaatggct
    28981 accacgtggg tattagcccc tgtctgtgta gtcatttgca attcttggac cttagatacc
    29041 ccgtcacgtg ggtagaagac aatgatttgc gtgccaggaa cgtctgcaaa accagccata
    29101 gctgccttac ctgtatcgcc tgaagtcgcg gtcaaaatga caatctcatt ttccaaacca
    29161 tgctttttcg ccgcagtcgt catcaagtaa gggaggatgg acagagccat atccttaaag
    29221 gcaatggttg aacctcggaa gagttccaaa ttgtactgac cttttagctt aaccactggg
    29281 gcaatagctg gtgtgtcaaa cttgctatcg taggcattgt tgatacagta gtccaactca
    29341 tctgccgtaa aatcgtccaa gaaagccgac aaaatcaact tggcaacttc ttgataagaa
    29401 gcgtctttga gaacagaaaa gtccaagtca actgctggaa tagaaatcgg tgtaaacaaa
    29461 ccaccgtcgg tcgccaagcc ctgcaatatc gcctgactag ccgatacagt atttttagca
    29521 tcgcgtgttg attgatatac taatgtcatg gtatccctca taaaaaatct attttttcta
    29581 ttctaccaca aattgacaga aaattgtgaa agatagatag aaaagtctct ctttctcggc
    29641 taaaccctaa ctttccaacc actttcgctt tttacaggat ctccaccatt atttctaaac
    29701 aaacaatccc ctatttttca atagaggatt gtcttacgat atttggaggc aatttaccta
    29761 taaatcatac tccgttcaac tgagtaggat acgatttgct actcctacct agactttttt
    29821 ctagtcctaa gtctttctag gcagattgac gaaggtgaag ctaaatcact aaggaatgat
    29881 tttctaaacg agacaaggca aagcgacgta gacataacta aagttaggca aggagcttta
    29941 acgatgtatc gtgacgaaaa tccttacttg atgcgacctg gacgttcttt gtaaccgtag
    30001 taggcatctt cgatgatttc ttgcatgtgg tcaaccattg ctagacgtgg gttagctggg
    30061 gtacattgat cttcgtaggc aagaagagcc aattcgcgag agtgttcttt gagttctttc
    30121 tcgtcgatac cttgtgcttt caagttcatt tggataccga tgcgttcacc gaggtcgtaa
    30181 actgcttgtg cgtatgctgc aacagcttct tctggtgttg aacatggcaa acctagaaga
    30241 cgagcgatgt cttggtattt ttcatctgct ttatagtagt tgtacttagg ccatgtagct
    30301 gtcttagctg gacgagtacc gttgtagcgg ataacgtacg gaagcaagat agcgtttgta
    30361 cgaccgtgaa cggtatggaa acgtccacca atcttatgag ccattgagtg agaaatacct
    30421 aggaatgcgt tggcgaaggc catacctgcc atagttgatg cgttgtgcat tttctcacgt
    30481 gatacaaagt cagcattctt cactgagctt tcaaggtttt caaatactag tttgatagct
    30541 tgaagtgcta aaccatctgt aaagtcgttg gctactgttg aaacgtatgc ttctgtagcg
    30601 tgagtcaata cgtccatacc agtatccgct gtaacgtgtg caggtactgt caatacgagt
    30661 gctgggtcaa cgattgccac agttggtgtc aatgagtagt cagcgattgg gtatttacgg
    30721 ttgtttgctt tatcagagat tacggcaaac ggtgttactt ctgaacctgt acctgatgta
    30781 gttggaatcg cgataaactt agatttctta ccaagttctg ggaacttgaa ggcacgttta
    30841 cggatatcca tgaatttttg aactaggtca tggaaatcaa ctgttggttg ttcgtagaag
    30901 agccacataa ctttggcagc atccattggt gaaccaccac cgagtgcgat gattgtatct
    30961 ggtttgaagg tacgcatcaa ttctgtgcct ttataaaccg ttgtgatgtc tggatctggc
    31021 tcaacgtctg agaagatttg ataaacaact ttattacgac gaaggtccaa ttgttcgatg
    31081 atacgatcta ggaatccaag ttctaccatg gcacggtctg taacgatcat gacacgttca
    31141 acgtcacggc atttttggag atattggata gagtcacgtt cgaagtatgt tttagaagga
    31201 actttaaacc attgcatatt atttctacgt cttcctactt tcttgatgtt gagcaagttc
    31261 atagcactta cgttatcact gattgagttg cgtccgtaag aaccacaacc aagtgtcaat
    31321 gatggcaaga atgcgttgta aacatcaccg ataccaccga aagtagatgg agagttccaa
    31381 ataacacgga tagcacgtac gattgtacca aactctttcg ccaattctgc gtcttccgta
    31441 tgaatagctg cagagtgacc gagaccgtgg aattcaacca tttggcgagc tgcttcaaga
    31501 ccttctgcac gaccttcaac tttcaagacg gcaataacag gtgacaattt ctcacgagtc
    31561 aatggttctt tttcaccgat ttcagcaacc tcagctgcca agatgtttgt accttctggt
    31621 actgagaagc cggcctgctc agcgatccat gcagctgggc gaccaacgat gtctgcgttc
    31681 aatttacctt cagcacagtt tttgctgtta gctttcacac cgaagcagta ttcttcaaga
    31741 agagcttttt ctttcttatt aacgaagtaa gttttgtaag atttgaactc tgttacaaac
    31801 tcatcgtaaa cttctttatc aatgataact gcttgttctg acgcacagac cataccgttg
    31861 tcaaatgact tagacataac gatgtcatgt gctgcctgac gaatatttgc tgatttttca
    31921 acataggctg gaacgttacc tgcacctaca ccaagggcag gtttaccaca agagtaagct
    31981 gcgcgcacca ttgcgttacc accagttgca aggattgttg caataccatc atgtttcatc
    32041 aactcagatg ttgcttccat agatggtttt gtaatccact ggatacagtt ttcaggagca
    32101 ccagctgcca cagctgcttc atagacaaca cgagctgcat gagcagaaga ttcttgtgca
    32161 gatgggtgga aggcaaagac aatcggatta cgtgtcttca aggcaatcaa tgatttaaag
    32221 attgctgtag aagttgggtt tgttgttggt gtgataccac aaacaacacc gaccggctca
    32281 gcaatcaaag tcaaacctgt cacttcatct tcttcaataa caccaacagt tttcgtgtga
    32341 cgcatgttat tgacaacgtg ctcacaagca aacaagttct tagtagcctt gtcttcgaat
    32401 acaccacgct tagtttcttc aaaggcgtgc attgccaatt cgccatgttt atcaagggct
    32461 gcaaccgaag ctttcgctac aatatagtct acttcttctt gaccaagttt acggaactca
    32521 tcaagagcaa ccaaaccttt ttgaacaagc tcatcgacgt gcttgcgcgc ttctaccaac
    32581 ttttcttctg gtgatactac ttttttatca gccattgtgt tcctccaaat atactcgcta
    32641 actatttgtt aactttttca caatgttatt ctactatttt ttattttatt tgtaaaggga
    32701 aattgttaat tttttcacat tttttctgtt tcgttataga aagcgcttac tttttcctat
    32761 tttcagaaaa cattcagatt tgtttctgct ttgtttggtc aaaaaataca taaagtaaga
    32821 caaatcttta tcatttattc tttctctaac atttacgata ctagtttatc aagaaaacgc
    32881 ttccatgtaa atagattttt ttgaaaattt tgtagtaatt acgtgataat tttcaatttt
    32941 atattcattt gtccctcctt ttctactctt gcatttttgt tcatattgtg atattcttaa
    33001 caatataaaa caactatatt aacacatcca aaaatgtata taaaatatta aaacaggagg
    33061 tctgcttatg aaagcagtcg ttgtaaatcc agaatctact ggtgttgtcg ttgtcgataa
    33121 ggaacttcgt tcactcgaag ctggtgaggc tttggtccaa attgagtact gtggtgtttg
    33181 tcacactgac ctccacgttg ccaatggtga ttttggtaag gtccctggtc gcgttcttgg
    33241 tcacgaagga atcggtattg ttacagaaat cgcacctggt gttaccagtc taaaagttgg
    33301 tgaccgtgtc agcgttgctt ggttcttcca aggctgtggt atgtgtgaat attgtacaac
    33361 cggtcgcgaa actctctgcc gtaccgtaaa aaatgccggc tactctgttg acggtggtat
    33421 ggctgagcaa tgtattgtaa cagcggacta tgcagtaaaa gttccagaag gtcttgatcc
    33481 agctcaagca agttctatca cttgtgctgg cgttacttgc tacaaagcga ttaaagaagc
    33541 tcacttggaa ccaggtcaat ggattgctat ctatggtgct ggtggacttg gaaaccttgc
    33601 tgtacaatac gctaaaaaag tcttcaacgc tcatgttatc gccgtagaca tcaataataa
    33661 taaattggaa ctcgccaaag aagttggtgc agatgtgacg atcaacggac ttgaagtaga
    33721 agatgttcct ggatatatta aagaaattac tggtggcggt gtacactcta ctgttgtaac
    33781 agctgtttcc aaagtagcct tcaaccaagc tattgacagt gttcgtgctg gtggctatgt
    33841 ggtggctgtc ggacttccat ctgaatacat ggacctcagt atcgtgaaga ctgtgctaga
    33901 cggtatcaaa gtggtcggct cactagttgg tactcgtaaa gatttagaag aggccttcca
    33961 cttcggtgct atgggactag ttgttccagt cgttcaaaaa cgccctgtcg aagatgccga
    34021 agcagtcttc aatgaaatgg ttgccggtac tatccaaggt cgtatggtct tagacttctg
    34081 ccactcacac taatgcgttc tccactattt tcaagaagtg attatccaat cgcttctttt
    34141 ttgctttcta aaataaaaag aagcagcttt agactactgc ttctccaatt cttctaaaat
    34201 acttgcaaaa tctgttttaa gtgcttccaa gcttgtttca acttgacttc ttgtctggtt
    34261 atttttgacc acaacctgtc cagattcaat ttcgctacca cccagggtaa tgatagcctt
    34321 ggctccaaag acatctgctg acttaaactg agccttgagc ttgcggtcca gatagtcacg
    34381 ttctgcacga aaaccttgct tgcgaatggc ttgaacaaga tcaagcgctc cgccattggc
    34441 ctcctgaccc aaaaccgcga tgtaaatatc taactgggtg tcgagaggga gctcgatgcc
    34501 ttgcttttca aggactagga tgaggcgctc aatgcccatg ccaaagccaa aagctggcgt
    34561 ttctggtcca ccaaagtagg tcaccaagcc atcataacgg ccaccggcac agatggtcag
    34621 gtcattgcca cctacctcgg tcataaactc gaaaatagta tggttatagt agtccaaacc
    34681 acgcaccatg ttggtgtcaa tcacataagc aatgcctaag ctgtccaaca tagtcttaac
    34741 cgcttcaaag tgagcagtac tttcttcatc tagatagtcc aagatggacg gtgcattttc
    34801 cacagcgatc ttgtcttctt tttccttaga atccaacaca cgcaaaggat tttcttccaa
    34861 gcggcgctgg ctatccttgg aaagctggtc cttgagtggc gtcaggtagt caatcaaggc
    34921 ctggcgataa gcggcacggc tctctggatt gcccagactg ttgaggtgga ggcgaatgtc
    34981 cttgatcccc agctcctcaa agaagtggta ggccatagca atggtttcta cgtctgtcgc
    35041 tgggttatta gaaccaaaac actccacacc aatctgatgg aactggcgta gacgaccagc
    35101 ctgcggacgc tcatagcgga acattggacc catgtaatag aacttagcag gtttttgtac
    35161 ttctggagca aacagcttgt tctctacata ggagcgaaca accggtgccg tcccttctgg
    35221 acggagggtg atatgacgct ctcccttgtc atagaaatcg tacatctcct tggtcacaat
    35281 gtccgtcgta tcgccaaccg aacggctgat cacctcgtaa tgctcaaaga ttggtgtgcg
    35341 aatctcagcg taattgtact gtttgaaaat gctgcgggta aagttttcca cgtactgcca
    35401 tttggcagaa tcctgcggta gtaaatcctg tgttcccttt ggtttttgta atttcatgga
    35461 ctttctcatt tctctaaata ttgcccttta ttttatcata ttttggtctt ttttggaaat
    35521 ggcagagcag a
//
LOCUS       DASFRC010000004        34021 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.004, whole genome shotgun sequence.
ACCESSION   DASFRC010000004 DASFRC010000000
VERSION     DASFRC010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 34021)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34021)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34021
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.004"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            40..282
                     /locus_tag="U1087_000112"
     CDS             40..282
                     /locus_tag="U1087_000112"
                     /inference="COORDINATES: protein motif:HMM:NF016419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin"
                     /protein_id="HEM4754641.1"
                     /translation="MHKINWGVRLRNKTFWWTLIPLIVLLAQQLGFNWVPKDWETTFG
                     TIMSILTVVGVINDPTTNGIADSEQALHYYEPKVDR"
     gene            370..1089
                     /locus_tag="U1087_000113"
     CDS             370..1089
                     /locus_tag="U1087_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011285561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEM4754642.1"
                     /translation="MTTVNEVVNFAKDLANRGQGVDYDGWYGKQCVDLPNWISGKFFG
                     KALWGNAIDLIKSAKQHGFEVHYMPTSESPRPGAIFVKNYWAGDGINYGHTGLIIGVS
                     GNTVQTIEQNLVGNLSVGGPAQYSSQQISNLVGWFYPPYSDSTTVATQASSGNLGKIK
                     DEKGTMTVKVSLLNVRDKPGLDGKVVATYTNGEQFNYDSVYIADGYIWVSYVSRSGVR
                     RYVAAGEESNRRNVVPYGIFK"
     gene            1413..1916
                     /locus_tag="U1087_000114"
     CDS             1413..1916
                     /locus_tag="U1087_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001841550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754643.1"
                     /translation="MELRELVKDYRKNFVGKSCQVSTNYSDLTNLIVHFQATDLHHLF
                     GLHKITSDYASRTLSQIESGKFNLSDFKSLPSYREVTRRVTLYPFIAEIFMKQATEYC
                     VIRKDLSKNSMNLDLVFFEGDNRNVKVLGLRRDKSGFYRLVTLHESSARKYTRVRKTK
                     ITDIVWL"
     gene            complement(2094..3188)
                     /locus_tag="U1087_000115"
     CDS             complement(2094..3188)
                     /locus_tag="U1087_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018368331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM4754644.1"
                     /translation="MAYFRKRENGWEYRISYKALDGSYKQKSKSGYRTKSDAVQAASQ
                     AEIELSSGIVEDKNITLAGYFEKWMLVHKKPHVGPETLGKYEYTHKLITKYFRDAKLS
                     KINATSYQNVINELATNFVKDSVKRFNSHIRASIKVAIHQGILKKDFTEIVKIFSDVK
                     SKREEDKYIELDEYEQLITDYRKTIKYQSHFFLYTVGKTGLRFSEAAGITEPIVDREN
                     MCLRIYRTYKVYGKKKGWGPTKNPQSERDVPFDSEWLKAYDEYMKVGYIDNPDKRLFT
                     KLTGTGENKILKKKTRQTFNVHGLRHTYVSWLIYHDVDVVTIAKLVGHKDATETLKTY
                     SHLFKAKQEQSFDKVRNLMEKFGADLGQTH"
     gene            complement(3461..4297)
                     /locus_tag="U1087_000116"
     CDS             complement(3461..4297)
                     /locus_tag="U1087_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009014217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HEM4754645.1"
                     /translation="MASGRTNDEIALYVAQTITELEEYLHHLTKNGDPDDARADKISQ
                     WVESWTKYLKQEKKFNPRSIPAFKRGSIVYVDLGFNVGTEYGGIHYAIVLNKKDSRNN
                     TLLHILPLTSIKETTDVDNLKYYQLSLSNEIHRLLIQKAQNNIKLIAEKKIIFEEKQE
                     KIDQKIAELKSILKDQVVSEDLNPRFEEYFENELSIVTSEQQEIDKIVRDMTAQSEYL
                     EKLINKIKNLKMGSIALLNQVTTISKLRLLDPINKKSLLTDITLSAETLDIIDDALKN
                     IL"
     gene            complement(4366..5115)
                     /locus_tag="U1087_000117"
     CDS             complement(4366..5115)
                     /locus_tag="U1087_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM4754646.1"
                     /translation="MDTQIAFPAMVKQYRTASSLTMEQLAEKIGKTKSTISKWEKGTR
                     SPKIQEIEELANFFGIDPQIMMFGKSYTPTTAPNSLVEQISDKVAYLDQELKEPRHSA
                     WISHGERLLSEQEKENTVNELQATYHTYNYYDQPASAGTGQYLNDVKVETIELPIEVE
                     ADFVVPIYGDSMEPEYQSGDYIFVKLSVDLSDGDIGVFEYYGDAYIKQLIINEDGAFL
                     HSLNEKYNDIKIDKDSDFRIIGEVVDVYRET"
     gene            5500..5664
                     /locus_tag="U1087_000118"
     CDS             5500..5664
                     /locus_tag="U1087_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017650606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754647.1"
                     /translation="MSWKKILFGSYEKTFVSQDGRAKTTISIKGGLLLNLLALVGLVG
                     LIWWLIGLFT"
     gene            5681..5887
                     /locus_tag="U1087_000119"
     CDS             5681..5887
                     /locus_tag="U1087_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001157160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM4754648.1"
                     /translation="MTETAFEKLLNDSGMKRNVIAERMGLTRSGFYRKQKKPKERFDG
                     DEMAKLAEVIGVDPQKVLAAILIS"
     gene            6198..6419
                     /locus_tag="U1087_000120"
     CDS             6198..6419
                     /locus_tag="U1087_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin"
                     /protein_id="HEM4754649.1"
                     /translation="MSKQRYGRPSTGQKGNNRPTVVISRENYDEVDNLSIGTGMSRSA
                     IIDYFISEGLKRARIEEVVIKTKRLVLED"
     gene            6434..6571
                     /locus_tag="U1087_000121"
     CDS             6434..6571
                     /locus_tag="U1087_000121"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754650.1"
                     /translation="MEEKQTFATAVNEYAKEVFEKADKKDPASVAAVAELIKAMKGIF
                     Y"
     gene            complement(6568..6786)
                     /locus_tag="U1087_000122"
     CDS             complement(6568..6786)
                     /locus_tag="U1087_000122"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754651.1"
                     /translation="MKKYIVDMLEQKQILALTLSDGQTVIVIEVANEHKGYDNLIEVV
                     ERKDKTSFLLNLDQVITVRPYIPTEWVY"
     gene            6855..7061
                     /locus_tag="U1087_000123"
     CDS             6855..7061
                     /locus_tag="U1087_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM4754652.1"
                     /translation="MELGKRIKVIRVSLGETMEQFGQRFNTSKGTVNNWEKGRNAPNK
                     ANLKKIADLSDNPREFVTLYLTRI"
     gene            7147..7449
                     /locus_tag="U1087_000124"
     CDS             7147..7449
                     /locus_tag="U1087_000124"
                     /inference="COORDINATES: protein motif:HMM:NF024139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM4754653.1"
                     /translation="MDAMLEAFEVLKQEIVQEVLSEVRKELAIERKPSQMSDKAIGVK
                     EACEIMGMSRNPFMAIVKAGKIPYHMAGTHFRFDQRDIEYYKAKMKVKKKVKGLSA"
     gene            7446..7703
                     /locus_tag="U1087_000125"
     CDS             7446..7703
                     /locus_tag="U1087_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754654.1"
                     /translation="MTEAILTLGIFAVPMLAVGIVEQRKAEKKRMCEEFEEIRRRDYL
                     YGFKAGMGYQSTCDIEKARNGLKRDAQQVDREWKRYAEMVG"
     gene            7684..7887
                     /locus_tag="U1087_000126"
     CDS             7684..7887
                     /locus_tag="U1087_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754655.1"
                     /translation="MQKWLANFLKQEKPAIPRPLYTLEQENQLLHDMVREIAEQRNEY
                     RIENQRLRDENERLRRILEYDSD"
     gene            8028..8300
                     /locus_tag="U1087_000127"
     CDS             8028..8300
                     /locus_tag="U1087_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000989846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM4754656.1"
                     /translation="MLAVILSNKPDWVVYPEEIAKRMGVSRQFVNKHFKILEEAGYLF
                     VIKKGGGRAKGVTPFRFFNDKPFTDKFKEYIQQKLDEELSTGNNVQ"
     gene            8559..8861
                     /locus_tag="U1087_000128"
     CDS             8559..8861
                     /locus_tag="U1087_000128"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754657.1"
                     /translation="MKQNNTFIVLRDKEGNYLAGFENNPQVLAYSADWVSAINEALTI
                     PEKYFYGEDNEQYLAMTKMFDAELIKVQAEYTLTTLDGQEPAEPVKDADDTVGTFF"
     gene            8924..9064
                     /locus_tag="U1087_000129"
     CDS             8924..9064
                     /locus_tag="U1087_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754658.1"
                     /translation="MKLRERENLVWQRATAGEKEKLLDTGLADKAGYIRLVRELGRKY
                     VA"
     gene            9379..10257
                     /locus_tag="U1087_000130"
     CDS             9379..10257
                     /locus_tag="U1087_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019292867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecT"
                     /protein_id="HEM4754659.1"
                     /translation="MTTNQVVTHKNFFNAPNVQKSFDDVWKGAGVQFATSILSVIQGN
                     ASLKSASNESIMTSAMKAAVLNLPIEPSLGRAYLVPYKGQVQFQLGYKGLIELAQRSG
                     KYKSINAGPVYKSQLVSYDPLFEELTLDFTQPQDEVVGYFASFSLLNGFRKLTYWTKA
                     EVEAHGKKFSKTFGNGPWKTDFDAMARKTVLKHILSIYGPLSVEMQTGMQSDESENNN
                     TSRDIKNAEPVQSAGQDILDKMTGKIVAEEPAKDVTISEVEAVEEVGVDISKMETTEQ
                     VIDAETGEILDEEEPF"
     gene            10257..11471
                     /locus_tag="U1087_000131"
     CDS             10257..11471
                     /locus_tag="U1087_000131"
                     /inference="COORDINATES: protein motif:HMM:NF018751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1351 domain-containing protein"
                     /protein_id="HEM4754660.1"
                     /translation="MSEELSLFDNLESMAPVPTATVLDFDFEFTPAQITIVGKDLLEQ
                     ALTGYVEKYKNYTVTAETFEDDAKVRAELNNLQKKVKSAVKEKLADYNKPIDEVKAWV
                     DGLLEPIAKIGKSIDEGVKAFEEQERLKRAKTIEELFQEAIANTGKDIDIRLFSKYFD
                     EFSKKTCFMADNVRPNKATVNMVASLVEEEVAKKEEYESALIKITEAAAKADFGPAPY
                     VRNFEQGASLADILQAIADDKALADRTREEVRRKQQLAKRIEELTAIAESKGLNPKKY
                     ADMLESGVSALAVHEELVNDARKWQEEQDRMEQEFLAQHGAICGNAQNRPNSDEIQRE
                     NASEGKYTSEQKNASEDKIELNKKVVKWQGDFRITFPDGETAKLFGGPGGLYEQHGIV
                     VEKLGEWTKIND"
     gene            11464..12300
                     /locus_tag="U1087_000132"
     CDS             11464..12300
                     /locus_tag="U1087_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease-like domain-containing
                     protein"
                     /protein_id="HEM4754661.1"
                     /translation="MTKLTEENYYQDRQWLSNSRFKAYMDCEAKAKAIDDKEWTDKRD
                     DTALLVGNYVHSYFESEEAHANFIDTNKTRMISSRGATKGELKKEFQVAQNMIDALKD
                     DKDFLPLYHGNPGDDVRKEMILEGEIFGIKVKGKVDSINLTEGYFVDLKTMKTIRGLE
                     WSDVERKKMPGAAANILGFRYDVQLGLYQELLRQMGYPNFVPFVVAVSKEDVPDKMLV
                     DLPQYRLDEGLQFFENNVERVAGIIAGEIKPKGCGNCDYCRSKRTLDRVINLDDLIAG
                     IF"
     gene            12314..12589
                     /locus_tag="U1087_000133"
     CDS             12314..12589
                     /locus_tag="U1087_000133"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754662.1"
                     /translation="MTNFAEKMKQLKEESIAEFSLVAGTIGEARELLELVKSNGIKWF
                     SGEPIEHMSEYIYKKMQTYPEKRFVLNFRNGFNLKKQLTIFCTWEHR"
     gene            12915..13091
                     /locus_tag="U1087_000134"
     CDS             12915..13091
                     /locus_tag="U1087_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017644253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754663.1"
                     /translation="MVAKLGRPKSENPRHHNTRIRMTDDELTMLEYCSKVTGKTKTDI
                     LMLGLEKVYKSIKK"
     gene            13214..13453
                     /locus_tag="U1087_000135"
     CDS             13214..13453
                     /locus_tag="U1087_000135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754664.1"
                     /translation="MAKNKELEEIINHIHLAFRESEKSAELMQWDNLISIVINRDFDE
                     KKASVFFEAHACLLHTFANELIEFVLDYFVEEEEN"
     gene            13455..14261
                     /locus_tag="U1087_000136"
     CDS             13455..14261
                     /locus_tag="U1087_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage antirepressor KilAC domain-containing
                     protein"
                     /protein_id="HEM4754665.1"
                     /translation="MELQIFKNEQFGEVRTADIKGEVYFNLNDCCKILELSNPRKTLE
                     RLNPKGVTTSDTLTAGGIQQANFINESNFYKLVFQSRKPEAEKFADWVTSEVLPSIRK
                     NGAYVTNQKAVEIMSNPNALGEFLQGIANQVKQLELQNSNLVEKNEVLEVELLEARKQ
                     ARYLDVIIESKGAVRVTQIAADYGMSANQFNKLLHELGVQHKVNGQWILYKKYMGKGY
                     TDSTTFDYLDKNGQARANMTTTWTQKGRLFLYELLKNNDILPLIEQDEVA"
     gene            14272..14721
                     /locus_tag="U1087_000137"
     CDS             14272..14721
                     /locus_tag="U1087_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RusA family crossover junction
                     endodeoxyribonuclease"
                     /protein_id="HEM4754666.1"
                     /translation="MKFEIPIEPKPQSRPRAGRRLGRTRVYEDDKMTAWRDKCTALVA
                     QLYKGPYFDKAIKVEATFYMSAPKSISEPPKPKSKAKKVQQYDDFINERIYVDIKPDL
                     DNLEKAVYDSISKAGNVWTDDNIIVEHTTRKVYSPRPRIEIKVEEVL"
     gene            14727..15011
                     /locus_tag="U1087_000138"
     CDS             14727..15011
                     /locus_tag="U1087_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006151492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3310 domain-containing protein"
                     /protein_id="HEM4754667.1"
                     /translation="MIYACTCPECEGQEEQFNNVTKPKHYQGKYGMEALDVVKNFIGN
                     LAGESAYYWGNVIKYLLRFQQKNGVEDLKKARQHLDWLIEEMEESNENNK"
     gene            15131..15487
                     /locus_tag="U1087_000139"
     CDS             15131..15487
                     /locus_tag="U1087_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016622902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754668.1"
                     /translation="MNKTIENVKITKTFLGREDHGILTCYLTVEGDGFGVSIGGYCLD
                     KYDENKRKRVAYHKSFELIDRILEVVGVSTWEELQGKYIRVKSNGFGGRVTKIGNLIK
                     DDWLDFDTFFKEETDE"
     gene            15480..16010
                     /locus_tag="U1087_000140"
     CDS             15480..16010
                     /locus_tag="U1087_000140"
                     /inference="COORDINATES: protein motif:HMM:NF019467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1642 domain-containing protein"
                     /protein_id="HEM4754669.1"
                     /translation="MNKQEAIEIIEQSKIKIANRGRVIFKAGEIIVENVQVDYVPLEV
                     VVNTIDQIHEPQKVVVPKFIADSIEYCKNEEGYGLLRAMDYCDEYNDTGEWLEHNQET
                     FALAWLFGYEIEQEKLYTVELFNGQPLVEEKNILYFSSDLAASNAHVGKDKLEAAGFG
                     WVFDCNGVKVVEVKND"
     gene            16003..16191
                     /locus_tag="U1087_000141"
     CDS             16003..16191
                     /locus_tag="U1087_000141"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754670.1"
                     /translation="MIKKYHRVKCELHGWLNCHYDYDQDKYSTAEAISDFIYSIIDDF
                     KVKAKDVTVETVERSEVE"
     gene            16191..16334
                     /locus_tag="U1087_000142"
     CDS             16191..16334
                     /locus_tag="U1087_000142"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754671.1"
                     /translation="MKQLLRSVGFILIFYSVAPNIIHEMTLAQKIMFGLGASWLFYEG
                     GRK"
     gene            16331..16687
                     /locus_tag="U1087_000143"
     CDS             16331..16687
                     /locus_tag="U1087_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000612373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754672.1"
                     /translation="MIPKFRAYNPATNNWYNSDEVFVCDGKIYLNDDDFEDLIQNNDV
                     ELMQSTGLFDINGKEIFEGDIVRMHSGELLPVKLHHGMFEPVCYYASRAFGRVGNVFE
                     NPELLEHPDFREVNNE"
     gene            16680..16901
                     /locus_tag="U1087_000144"
     CDS             16680..16901
                     /locus_tag="U1087_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000180424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754673.1"
                     /translation="MSNEKLGVLLVDVPDIMFFKYNYIIDTEEVGASTFIINGTDFLE
                     KLERLAYKCTQEEAKKYPQFKWVALEELV"
     gene            16898..17101
                     /locus_tag="U1087_000145"
     CDS             16898..17101
                     /locus_tag="U1087_000145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754674.1"
                     /translation="MTIKELINELQMYDEDKEVVLTIANVHPVLHELIDLETGLVRLS
                     SDCQIGFEFNLLSDNRLEIEGVW"
     gene            17102..17362
                     /locus_tag="U1087_000146"
     CDS             17102..17362
                     /locus_tag="U1087_000146"
                     /inference="COORDINATES: protein motif:HMM:NF013540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM4754675.1"
                     /translation="MTTADKIKHILQKTGWTREQFASEMGVTTLSVYKWLDGRPPRQR
                     MLDKIDELYEQVKPYEPRALAPRGKIRLVYPYYSHQRQPWEK"
     gene            17437..17844
                     /locus_tag="U1087_000147"
     CDS             17437..17844
                     /locus_tag="U1087_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1492 domain-containing protein"
                     /protein_id="HEM4754676.1"
                     /translation="MNKAKAILKDLRNLDLYIASLIRRREKIEASLLSSPKWTADKVS
                     GGAKKKQDDVYVELMATADDIEKKTAEAIKKQRELQNIIDNLNDDTSKTILSLVYIDK
                     MSMYDVMDEMRISDRTYYRLLRIARKELEQVWQ"
     gene            17945..18034
                     /locus_tag="U1087_000148"
     tRNA            17945..18034
                     /locus_tag="U1087_000148"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:17980..17982,aa:Ser,seq:gct)
     gene            18280..18744
                     /locus_tag="U1087_000149"
     CDS             18280..18744
                     /locus_tag="U1087_000149"
                     /inference="COORDINATES: protein motif:HMM:NF015550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HEM4754677.1"
                     /translation="MVDEFGLNSRERNFADEYIANGNNATQAYLKIYPTSGEANAANK
                     GSAWVRKGEILNYIKIKTKERLDASGLKSSDIIDRLIDIAFGRPIIGYSKQTDKLTGE
                     VIKHIEYESTAPIDEQIKALELLGKYLKLFTDKVEAEVNGTVVFANEADIPD"
     gene            18722..20026
                     /locus_tag="U1087_000150"
     CDS             18722..20026
                     /locus_tag="U1087_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018166024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PBSX family phage terminase large subunit"
                     /protein_id="HEM4754678.1"
                     /translation="MKQTSQINVDLPKIVGKGYGQFWRSRNFYRVVKGSRGSKKSKTT
                     ALNFVVNLLKCPWANLLVVRRYSNTNKQSTYTDFKWACNQLKVSHKFKFNESLPEITV
                     KATGQKILFRGLDDELKITSITVDVGSLCWAWFEEAYQIETEDKFSTVVESIRGSLQD
                     TSAFAFNRLDGTYGNVPFYKQITVTFNPWNERHWLKKVFFDEDTKRSDTLALTTTFRC
                     NEWLDEVDIKRYEDLYITNPRRARIVCDGEWGVAEGLVYENVQVADFDKESLLQSGNY
                     KLCVGLDFGFTHDPTALVAYLVDDKNKNIYVFDEHYQVGLFTKDIAEMIKNKGYASSQ
                     IVADCAEARLIEELKSEHGIRRIKASRKGKDSVMAGVSKLQGYKIVVHPSCTHIMDEF
                     YSYCYQQDKEGKWLNKPEDKNNHLMDALRYGLQCAERKEWLY"
     gene            20037..21536
                     /locus_tag="U1087_000151"
     CDS             20037..21536
                     /locus_tag="U1087_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000894655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HEM4754679.1"
                     /translation="MLDVKDISQVERGIKKLIDNDLTDQSKEKMRTALDYYRGKHDIL
                     DYRLYYIDDIGQPKEEKYRSNTKIAHGFFTELVDQKVQYLLSNPIEIQTEQQELQEYL
                     AEYVNEEFQLVLQELVEGASQKAVEYVFWRIDKDGRLVFEVADALKVIPIYNHDNQME
                     QVLYYVKDEIVVDGKNKEVKKIQLWTKDAIHYFVYADNKVRLDDTVTVNPTPHLLVKD
                     KKNEEVLGKGHGRLPFMVLHNNREKLTDLEPIKDLIDDYDLMACALSNNLIDFDHPIY
                     AVRGFEGDSFDKLVTNLKAKKTVGVGPDGGLDVKTVDIPIEARKEKLRIDKEAIYKFG
                     MGFDSSQTGDGNITNVVIKSRYSLLDLKCNKIEVRLRRIIKQMLELIVENINQRYSKA
                     YNTSDIEIIITRDIIANEVDNATIAKTEADTKQVAIQTILDAAPRLDSRTVLELLAGI
                     LEIDPDEVEKALDEEEYRGDLEQDTEVEDGVEPVSEGDATSTTTTGPEG"
     gene            21652..23121
                     /locus_tag="U1087_000152"
     CDS             21652..23121
                     /locus_tag="U1087_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001858300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754680.1"
                     /translation="MSAMLEAIDSQSQKLKTGLNGTIPDHLERVGKMAYNELFYEYEQ
                     TRSAIQFALLPEEELKTIIETPVAGLRLSQRINDGVVSDLRKSIKSELTRSFVHGLSY
                     QRTAKRLSELGSSSYRRALNITRTEAGRVSAIARQRSQKEAVDLGIEFKKMWVATLDK
                     RTRNTHQHLDGQQVGPEEYFEHNGLRTLQPHMFGIASEDCNCRCRTISRLKDDDTPLL
                     RRDSETGEVVEYRNYREWENKKLSSVEVDTSPKPYDFIDLSNPENQTIENFEIILSRA
                     KVAVEEYKKHTGIDLVSEFNNKNFRSMSNPYDDNKAKFLKFLYNKIGYDAKPQKLSDT
                     KGYNLFYRGITGSKETGSTAKDFYNRLVDGEYDFSGAMSSMVGRGIYFSIEQRMGQVY
                     AKNGILAEMYFPKNAKVIDDQVLKSFRNAFSNEQLSNPELAAINDLINYDIGPKINVA
                     GDRHFDFWAIFSGHDAVQRDNYEILAVYNRGVLGVKDND"
     gene            23114..23404
                     /locus_tag="U1087_000153"
     CDS             23114..23404
                     /locus_tag="U1087_000153"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754681.1"
                     /translation="MIKTTYTLLISAFSLIEYEKKYQNFDMFDQLKKITRRLDMKNAP
                     DFYPITLDDFSDTSISDEDKAILFDFIKQNQNKLDEHEDSFDIFVQLAPREI"
     gene            23437..23760
                     /locus_tag="U1087_000154"
     CDS             23437..23760
                     /locus_tag="U1087_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015984458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754682.1"
                     /translation="MNRDKKPGMETVKIGGIVYEVSKKPDLQGKTGEWGHIEYKTGKI
                     ALDDSTSQQIEDQTLIHEIAHGILVEAGYVQHEEEQADRIGKILYQVLTDNDFSWLWK
                     GGTNG"
     gene            23753..23932
                     /locus_tag="U1087_000155"
     CDS             23753..23932
                     /locus_tag="U1087_000155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754683.1"
                     /translation="MASFSIDLELNWENQDELQRLLQNVDKAQQAYQNALKELSEFKP
                     DIQVVSKNGGYKAHE"
     gene            23907..24167
                     /locus_tag="U1087_000156"
     CDS             23907..24167
                     /locus_tag="U1087_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018166057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754684.1"
                     /translation="MEVTRHTNKRIKKKRELIEQVQGTKEAVDIALNIIKSLLDENAK
                     QANEIAELRSIIERNAQATNSRFDKIEKQVANSNAKKPFWKR"
     gene            24363..24950
                     /locus_tag="U1087_000157"
     CDS             24363..24950
                     /locus_tag="U1087_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018377861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage scaffolding protein"
                     /protein_id="HEM4754685.1"
                     /translation="MDWLKELIEKHTAEGKTDIDAVMNAVKKEFPKHAVPKDVYNEQA
                     EKLKVANSTLDTLKKSNKDNEELQNELKTYKDKVSQLEAEAKETAKKQTIKDALINAK
                     ATDVDYLMYKLGNLEEDDSGKIKDLDQKIKDLQVNLPNFFESAEAKEDKLNGYEHLGG
                     AGLLPGSAESTKDVIDVIGNKELNLTQFLQEKAKG"
     gene            24957..25946
                     /locus_tag="U1087_000158"
     CDS             24957..25946
                     /locus_tag="U1087_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003055861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coat protein"
                     /protein_id="HEM4754686.1"
                     /translation="MSNEITKIIDTITPKVFNAYMDQYINEHSLLVRSGAVVADERVS
                     RNITAGGLTVNMPFWNDLSGEDQVLSEDKEIETGKITSGKDVAAVLYRGQGWSVNELA
                     GVVSGSDPMRAILDRIGGFWLRQEQKVLMAVLKGLFATSGPLADTHLLDLSKKTGKAA
                     VVDAKAILDAKQLMGDASRKLKILAVHSSVYTKLQKDNLIQYIQATDANIQIPTYLGY
                     TLLVDDALAPEGDVYTSYLLGSGAFGRNTGHPEGLTTFETERKAAAGVDNVYTRRALT
                     MHPYGVRWQDNSIVGLTPSNAELATAENWKKVYEDKNIGIVAIRHKLAFSSEV"
     gene            25949..26275
                     /locus_tag="U1087_000159"
     CDS             25949..26275
                     /locus_tag="U1087_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018377863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754687.1"
                     /translation="MDKYITIDLFIDTDDDRVEYPIGALYPREGYTPSKERIDSLLSG
                     DNARGVPLIKQIIELPAKTTIPSDAENELTRDAVKEKLTQLGIEFNARAKTESLLELL
                     KTAEEE"
     gene            26310..26840
                     /locus_tag="U1087_000160"
     CDS             26310..26840
                     /locus_tag="U1087_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000587217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754688.1"
                     /translation="MIISLSEALIIHPKATQEMCDGLETMVRKVTNNHFQLEKFRLTH
                     LSLEGSTIKVDKGRLDIFREGDTVEINGTDFNDGLYVISGVSDGILSVNSTFIPESKK
                     GAILTKISYPADVIEGVKKLLSYDAKMTDKIGVKSESVARWSVTYYDVTASESQEGYP
                     AVLLGFLSKYKKIRWS"
     gene            26843..27142
                     /locus_tag="U1087_000161"
     CDS             26843..27142
                     /locus_tag="U1087_000161"
                     /inference="COORDINATES: protein motif:HMM:TIGR01563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head closure protein"
                     /protein_id="HEM4754689.1"
                     /translation="MEVALLKYRESGENALGQKVYDFVESEKMEGYLDMLTGNETDRA
                     TALTSSTHIFLTKQVDVQITTKDRIRAKGIDYEVSFVDNPVNLDHHLEIYLKVVA"
     gene            27142..27546
                     /locus_tag="U1087_000162"
     CDS             27142..27546
                     /locus_tag="U1087_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000673593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HEM4754690.1"
                     /translation="MKFIDNSAKAKEEIKYQAIRALKEICMMVEAQAILLAPSDTGNL
                     REHISHTVDRHELIGYVGTNVSYAIYVEFGTGEFAEKGNGRKGGWLYTTPDGKSYFTR
                     GNKPQPYLRPAFRKNKKQIQAIFETYLSQIGG"
     gene            27548..27934
                     /locus_tag="U1087_000163"
     CDS             27548..27934
                     /locus_tag="U1087_000163"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754691.1"
                     /translation="MTPVIAKLTELFTEIVPEAYFLSNSNPTVAYPYLIFSYDAENRN
                     WGQDGAYVDVDIFDNKGEDQEQIEHLAFLLKRELGHRAVMSEECYIRFRFEGQGTIDT
                     MSDVLQRRNVRFYITIDWRNEDEKTS"
     gene            27918..28526
                     /locus_tag="U1087_000164"
     CDS             27918..28526
                     /locus_tag="U1087_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003055880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754692.1"
                     /translation="MKKPVKKTGYTKNTPKSYIVNAGAVYKNLTWNTETQKWEGELFG
                     ATSGGNKLTIEQNYRQIEVDGVFTAAVGQKVLESQGAKLEINAKELTAENIRMAINGV
                     IEQGDGQKVPATSKVITAKGELKKTDYITNLGLVGNLSGTNEPIIVILDNALCVSGLE
                     FETKDNDEAVITMTFEAHANEEQIDDLTLPCRIIYPTVDMEV"
     gene            28528..28950
                     /locus_tag="U1087_000165"
     CDS             28528..28950
                     /locus_tag="U1087_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008089371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754693.1"
                     /translation="MAEKLEMRELNGGDIFTMLGIIGKLDIKDEVVELLERQFNQPAI
                     VLQDHKKKQPTKAEKEAAELATEKRGMLLMTDIGFAILRHVGEAKNDVNSFLADLTGT
                     SRKDIESLSMLAYTGLLMDFAKKAELRDFFQSISSVLA"
     gene            29046..29276
                     /locus_tag="U1087_000166"
     CDS             29046..29276
                     /locus_tag="U1087_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018377870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754694.1"
                     /translation="MYLFDEEDKDVLKEIWLAKEVDMSLQSFIDKHSKKRYISKVNRK
                     QILESDIDSALKNAESILNMGYGKEVRLDGNL"
     gene            29263..31923
                     /locus_tag="U1087_000167"
     CDS             29263..31923
                     /locus_tag="U1087_000167"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="PblA"
                     /protein_id="HEM4754695.1"
                     /translation="MEIFKLFGSIGLKNKEANQAIDETTGKAQTAGDKIKDTFGKVAT
                     FLGTVFAGKAIFDFGKSVVEAAATAKAVQAQFDQVFEGIRDVAENKLNDLAKTVGAVP
                     SRIKPAFNQIASFAKVAGMDASQSLEFTTRATEAAADSAAFYDKSLEETTETLKSYLK
                     GNFNVADNLGILSTETTRNAKATELFGQKYKDLDGIQQQEVLLRMFEDANKVSGAMGQ
                     AARESDGFENVMGNLKQTWEDFKVLVGGPLLQPVVAGLQLATKWIQDLGGKFQEFEPK
                     ITLFAEKLKDFTGFLKSNPAVLDGLKSAVVGLTAAWTSYKVITGVLRGIETARNTLLA
                     VGNGLMLARFTQSGALTVAEATQAAATMGATGAFSAFNAVLSLNPIMLVVGAIAALVA
                     GLVWFFTQTETGREMWSNFIEWAQNAWEGIGEFFSNLWQSITEGAINLWNGIVDTWNH
                     AVEIVKNVWSSISEFFTNLWADVQTTAIEAWNTFVQGVMMVVQPFIDTFMQYWTAMSD
                     GLSQMWEGVKMFFQGAWEFIKAIFMGAVLIILDIVTGNFGRLGADLDLIWESIKSAIT
                     MVWDGIKTYFSGVIDAIVAFGTTYFENFKNLLSAIWEGVKSAAQGAWDWIKTTVSNLI
                     TSLIDWARSTWDGFKNFLSSLWEGIKSTATNAWENLKQGVQNIIDGMVSGAKRAWDNL
                     KQSVSDLVSSVTSIFDNLRNIDLFAAGQAILDGFLGGLKSAWDNVTGFISGIADWIFE
                     NKGPIEYDRKLLIPAGNAIMEGLGGGLEDGFDDVQDGVLGMAGKLVQKVSSAAKHFKD
                     TVVPQMGDWSSSLDWYAKGEIISLPSMYDVSSSNLLEHSSDGQSNSLLQKIIELLQAL
                     LDKDSDVYLDLEKVGRMTYDEHGRIIERGG"
     gene            31927..32622
                     /locus_tag="U1087_000168"
     CDS             31927..32622
                     /locus_tag="U1087_000168"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754696.1"
                     /translation="MLELKVDGISTKTIVECIVAGLGEDRTSSPRFIEETIYGMNGTN
                     RTIEAYDEVDRVLTFHCASLDAVRQLIKLFKGLDKKLEFWHIPNSFYYFDYKSSSYKI
                     NHKCSWDVSVKISLKPFRYLSEVEDVVLTQSGAITNMGDIFSEPRIEVFGNGQTSLTI
                     GNQVLRLNLDTKAVIECRHGYQNVYDKNGIIKNSIRTSGPFFEIPAQVTSGVVLGSGI
                     NRVVIRPRWRCEI"
     gene            32619..>34021
                     /locus_tag="U1087_000169"
     CDS             32619..>34021
                     /locus_tag="U1087_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEM4754697.1"
                     /translation="MISLKDKNVLLVNAFDDEIEQEGNGKYQLSFKYPTSDQRWKNIE
                     LADLLLADDLHGEQEFRVFEIVKRNGYIFVYANQVVDDLNSYSISNISVDRVNGQTVM
                     QALAGSIIRKHPFAFYSDIQDRHVFNQKNISVMGALANGKHSIIGQWGGDLVRDKYNV
                     NLLKRGGRESEALFMYKKNLKSYAETNSIKGLFTRLNLSVKNSDIKTTVDSPLIGSYG
                     GRVYELNVEVADQDVATLEQLQEYGRNYFAEKLIDVPNNSLTISVTDSQEYDVRIFDT
                     VFVHHEIFDKDLRMKITSYRFSPMGRKLKSIGFGKIKTSLTQQVSNIATEVVEQSVSV
                     AGQVFEEKLQKGIENADKVIDGKINKVRDEINDGIEQSRAEAERHADNIKRSIDTEIT
                     QVNQSMQAQSEERDRQVADILSKTQSVESLANQAKSDAASALARANQVKTEAIADARA
                     QVATVNQALNTAKTELQS"
BASE COUNT        10859 a         5827 c         7909 g         9426 t
ORIGIN      
        1 caaatctata ttcaattgcc gataaaggag ggataagata tgcataaaat aaattggggc
       61 gtacgcttac gcaataagac attttggtgg acattgatac cgttgatagt actattggca
      121 caacaactag gttttaactg ggtgccgaaa gattgggaga ccacttttgg tacaatcatg
      181 tctatcttga ccgtggtcgg ggtcatcaac gacccgacga caaatggaat tgccgatagc
      241 gagcaagcac tacactatta tgagccgaag gtggatcgat gaaggctctt aaaattattt
      301 tttgtgtatc gacgttgatt atattggcgc cgattgcatt tttgctttta ccatttttgg
      361 aggtattaaa tgacaacagt aaatgaagta gttaattttg ccaaagacct agccaaccgt
      421 ggtcaaggcg tagactatga tggttggtac ggtaagcagt gtgtagacct acctaactgg
      481 atcagtggca aattttttgg caaagctctt tggggcaatg ccattgattt gattaaatca
      541 gccaagcaac acggattcga ggtgcattat atgcctacct ctgagagtcc gcgtccggga
      601 gctattttcg tcaaaaacta ctgggcaggt gacggtatca actatgggca tactggtctg
      661 attatcggag tcagtggcaa tactgtccaa actattgagc agaacctagt tggtaatctg
      721 tctgtcggtg gtcctgctca gtattctagt cagcaaatca gcaatcttgt tggctggttt
      781 tatccacctt acagcgactc tactacagtg gcaacacagg caagcagtgg caatcttggt
      841 aagattaaag acgagaaggg gacaatgacc gttaaagtat ctttgctcaa tgtccgagac
      901 aagcctggtt tagacggtaa agttgtggca acgtacacga atggcgagca gtttaattat
      961 gattcggtct atattgccga tggatacatt tgggtatcgt atgttagccg tagcggtgta
     1021 cgtcgctatg tagcagcagg cgaggagtca aatcgacgca atgtcgtgcc ttacggtatt
     1081 ttcaaataaa tttttaaccc agcggtctgc tgggctttta tttgcgaaga tttttcttga
     1141 caagttatga taagttgtga aataatgtac gtggttaaga aaatagatga aattccgttc
     1201 atcacctcct ttctaaccat ctcggcttta tctgtggtga cacagacata tagtgaagcg
     1261 ctctatatgg cttggcagag ctttaaaact gttccctggt gataagccta agaagcacta
     1321 aggggagtta gtgactcgcc accactaatc gttaacctgg gcaagggttg aaacttgctc
     1381 agcgcttttt tatttttata atggagtctt gtgtggaatt aagagaactt gttaaagatt
     1441 atcggaaaaa ttttgtcgga aaatcatgcc aagtttccac taattatagt gacttaacaa
     1501 acctcattgt acattttcaa gcgacggatt tgcaccatct tttcggtttg cacaaaataa
     1561 caagtgacta tgctagtcgg acgttgtcgc agattgaaag cggaaaattt aatttgtccg
     1621 attttaagag tttgccaagt tatagagaag taactcgcag agttacctta tacccattta
     1681 tcgccgaaat ttttatgaag caggcgacgg aatattgcgt cattagaaaa gatttgtcaa
     1741 agaatagcat gaatcttgac ttggttttct ttgagggaga taatcgtaat gtaaaggttt
     1801 taggcttaag aagagataag agcggatttt atagattggt tacactccat gaatcttcag
     1861 ctagaaaata tactagagtt agaaaaacaa aaataacaga tatagtttgg ttgtagcccc
     1921 tcagcgtttg ctgggggctt ttttgttgct gaatttcaaa aaaatagcgt tttttcaaaa
     1981 tttgatagaa aaatacttac ttttatctcg gacgttttta aaaattgccg tttttgcgga
     2041 caaaaaaaga ccttgtccag aggtcttgag aagttgattt atggagtgtt tttttagtgc
     2101 gtctgcccca aatccgcccc aaatttttcc attaaatttc tgactttgtc gaatgattgc
     2161 tcttgttttg ctttgaataa gtgagaatat gtttttaatg tctcggttgc atccttgtga
     2221 cctactaact tggcaatggt cacaacgtcc acatcatgat agattagcca actaacgtag
     2281 gtatgacgta agccatggac attaaatgtt tgacgtgtct ttttctttaa aattttattt
     2341 tctccagtcc ccgtcaattt ggtaaataat cttttatctg gattgtctat atatccaact
     2401 ttcatgtact cgtcgtatgc tttcagccac tcgctgtcaa atggcacatc tcgttctgat
     2461 tgaggattct tagtaggccc ccaacctttc ttctttccgt aaactttgta agtcctgtag
     2521 attcgtaaac acatattttc gcggtcaacg ataggttctg taatgccagc cgcttccgaa
     2581 aatcgcagac ctgtcttccc gaccgtgtac aggaagaagt gggactggta cttgattgtc
     2641 tttcgataat ctgtgattaa ctgttcgtat tcatctagct ctatgtattt atcttcttct
     2701 cttttggact tgacatcaga gaaaatcttg acgatttcgg taaaatcttt ttttaaaatc
     2761 ccttgatgga tagcaacttt aatagatgct ctgatgtgtg aattaaatct ttttacacta
     2821 tctttcacaa agttggttgc gagttcgttg atgacatttt gataagatgt ggcgtttatt
     2881 ttcgatagct ttgcgtcacg gaaatattta gtaataagtt tatgagtgta ttcgtactta
     2941 ccaagcgttt ctggtccaac gtgaggcttc ttgtggacaa gcatccattt ctcgaagtac
     3001 ccagcaaggg taatgttctt gtcttccaca atgccactgg atagttctat ttcagcctgt
     3061 gatgccgcct gaaccgcgtc agacttagtt ctgtaccctg actttgattt ttgtttatat
     3121 gagccgtcta gggctttata tgagatacgg tattcccagc cattctctcg ttttctaaaa
     3181 tatgccattg atttaccctt tccaatttga tataatgggt atagtaaaga gacctactgc
     3241 aaagaaggtt tctgaactat atcagatacc ccacactctc cgccggcaag cttgagtgtg
     3301 ggggtttttg tttgtttttt tgagggagaa ttcatagaaa aaacctctgc tcgatgaaca
     3361 gaggtttcaa attgtcctca agggacgaga tcatttattt tgtcgtctag cgaccttatg
     3421 attcaattgt aacctttgtt cttatttttg tcaacagata ttataaaata tttttgagtg
     3481 catcgtcgat tatgtcaaga gtttcggcag acaaggttat atctgtcagc aaagatttct
     3541 tgttaattgg gtccaacagt cttaatttgc tgattgttgt tacttggttc aaaagagcaa
     3601 tacttcccat ttttaaattt ttgattttgt taatcaattt ttcaagatat tctgattgtg
     3661 cagtcatatc tctgacgatt ttatctatct cttgttgctc agaagtcaca atggatagtt
     3721 cgttctcgaa gtattcttca aatcttgggt ttaaatcctc tgaaactacc tgatctttta
     3781 atattgactt gagttcggcg attttctgat ctattttttc ttgcttttct tcaaaaataa
     3841 tctttttttc agcgattaac ttgatattat tctgtgcttt ctgaataagc aatcgatgga
     3901 tttcattaga taatgataat tggtagtatt taagattgtc tacatctgtt gtttctttta
     3961 ttgaagtaag cggaagaata tgtaagaggg tgttatttcg tgaatctttc ttgtttaaca
     4021 caatggcgta gtgaatgccg ccgtattcgg tgccaacatt gaaacctaaa tctacgtaaa
     4081 caatgctacc gcgtttaaaa gcagggatac ttctaggatt gaatttcttt tcctgtttca
     4141 aatattttgt ccaagactca acccattgac tgattttgtc tgctcgagca tcatccggat
     4201 caccattctt agtcaaatga tgaagatact cctctaattc tgtaatcgtt tgtgcgacat
     4261 aaagcgcaat ttcgtcattt gttctgccgc tagccatctg tttctccttt caattaacta
     4321 aatttaaaca ttcttccatc accatggtct cgttgaccgt ggtttttaag tttccctata
     4381 cacatccact acctcaccga taattcggaa gtcgctatct ttgtctatct tgatgtcgtt
     4441 gtatttttca ttcaagctgt gcaggaaggc tccgtcttca ttgatgatta gttgtttgat
     4501 ataggcgtct ccgtaatatt cgaatactcc gatgtcgccg tctgataggt ccacagagag
     4561 tttgacaaat atataatcgc ccgattggta ttctggttcc atggagtctc cgtagatagg
     4621 gacaacgaag tcggcttcca cttcaatagg taattcgatt gtttcaacct ttacatcatt
     4681 cagatactga cctgtgccag cggaagcggg ttggtcgtag tagttgtagg tgtggtaggt
     4741 ggcttgcagt tcgtttactg tattttcttt ttcctgttcg cttaacaaac gttctccgtg
     4801 gcttatccat gcgctgtgac gtggctcttt aagttcttgg tctaaatatg ccaccttgtc
     4861 cgaaatctgc tctacgaggc tgttaggggc tgtggtgggg gtgtaggatt taccaaacat
     4921 cataatttgc ggatcaattc caaagaaatt tgccaattct tcaatttcct gtattttggg
     4981 agaacgtgtt cctttttccc actttgaaat ggttgatttt gtttttccta tcttttctgc
     5041 taactgttcc atggtgagag agcttgctgt tctgtattgt ttaaccattg caggaaaagc
     5101 aatttgagta tccatactgt gtcctccttt ttttcttcat tatataatca tgtttacatt
     5161 ttgtcaacaa aaacgataac aagatatttt caaaaaagtt gactttttta acacaaaagt
     5221 gttgacaaaa aggaaacaaa gtcgtatact ataatcaagg ttaaggaatt aaccccacca
     5281 aaactaaaaa aacaggaggt acagccaatg gcaagacacg aaaaaaagcc taaacgcaga
     5341 gaaatcgaat ttgacattca attcttctgg tttagacttc gagtaaaata cttaatcgag
     5401 tggtagcttg attaagtagg ggggcaggag cctccctccc tcgtaagagg gataggtata
     5461 gtgtaccaca ttggctgtac ttcctgcaag gagtatctta tgagttggaa aaaaattctc
     5521 tttggtagtt atgaaaagac ctttgtcagt caggatggca gggcaaagac gactatctct
     5581 atcaagggtg gattgttgct taatctgttg gcactggtcg ggctggttgg cttgatttgg
     5641 tggctgattg gtctatttac atagaaagga gtgatggtta ttgacagaaa ccgcatttga
     5701 aaaactactc aacgatagcg gtatgaaaag aaatgtcatt gcagaacgca tgggcttaac
     5761 tcgttctgga ttttacagaa aacagaaaaa gcctaaagag cgttttgatg gtgatgaaat
     5821 ggccaaacta gctgaggtaa tcggtgtaga tcctcagaag gtcttagcgg ccattttaat
     5881 ttcataacga agttgacaaa aataacacaa acacaccagc tctgctattt cccaaatggt
     5941 cagtctttgg tcaaacttta tacaatactt gtataaaaag ttcttgactt cttcaagaac
     6001 tttaactaac aggtggaagg aggggtgacc atgacgtcta tacatgtgtc tttgtcggtt
     6061 gagatgaaga agcggttggg ggtggagtgc cagcgtctgg ggctgtcgat ggcggcttat
     6121 gtgcggttgg tgctggcgga gaagttgaga gaggagtagg gcggtacagc tctgctattt
     6181 acggaaagga ggaggacatg tcaaaacaaa gatacggtcg cccaagtaca gggcagaaag
     6241 ggaataaccg tcccacagtg gtcattagtc gtgagaacta cgacgaggta gacaacttat
     6301 caattggtac aggaatgagc cgtagtgcta ttattgatta ttttatcagc gagggcttga
     6361 aacgtgctcg tattgaagaa gttgtcatca agactaagcg tctagttctt gaggactaga
     6421 aaggagaaat aagatggaag aaaaacaaac atttgctaca gcggtgaatg aatacgctaa
     6481 agaagtattt gaaaaagcgg ataaaaaaga ccctgcgtct gttgcagcag tcgcagagtt
     6541 aattaaagca atgaaaggga ttttttatta gtaaacccat tcagttggaa tatatggtct
     6601 tacagtaatg acttgatcta agttgagcag aaaacttgtt ttatcttttc gttcaacgac
     6661 ttcaatcaaa ttgtcataac ctttgtgttc gttagcaact tctatcacaa ttactgtctg
     6721 accgtcactc aatgttagtg ctaaaatttg tttttgttct agcatatcaa caatgtattt
     6781 tttcataata ttacctcctt tctgtgttta ttatagcacg gaaagagagc aaccaaacta
     6841 gaaaggagaa agggatggaa ctaggcaaac gaataaaggt tatcagagta agcctaggcg
     6901 aaacgatgga acaattcgga caacgtttca acacttccaa aggtacggta aataattggg
     6961 aaaaaggcag aaacgcaccc aataaggcta atttgaaaaa gattgctgat ttatcagaca
     7021 acccaaggga gtttgtaacg ttgtatctta cacgaatata aaaacacaaa aaagcccctt
     7081 gacgaagtca ggagcttacc aaaaaaatca cttaaattat aacacacgaa agcgaggttt
     7141 gacaagatgg atgctatgtt ggaagcgttc gaagtcttga agcaagaaat tgtccaagaa
     7201 gtcttgagcg aggttcggaa agagcttgct atcgagagaa aaccctctca gatgtccgat
     7261 aaagccattg gtgtgaagga agcttgtgaa atcatgggaa tgagccgtaa tccgtttatg
     7321 gcaattgtga aggctgggaa aatcccttat cacatggctg gaactcattt ccgttttgac
     7381 caaagagata ttgaatatta caaagcaaag atgaaagtaa agaaaaaagt gaagggattg
     7441 agtgcatgac agaagcaatt ttaacattag ggattttcgc tgtgccgatg ttggcagtag
     7501 gcattgtgga gcaacggaag gctgagaaaa agcggatgtg tgaagaattt gaagaaattc
     7561 ggcgcagaga ctacctgtac ggctttaaag caggtatggg gtatcagagt acctgcgaca
     7621 ttgaaaaagc tcgtaacggg ctaaagagag acgctcagca agtggatagg gagtggaaaa
     7681 gatatgcaga aatggttggc taatttttta aaacaagaaa aacctgctat cccacgtccg
     7741 ctttacacac tagaacagga aaatcaacta ttgcacgaca tggtccgtga aattgctgaa
     7801 caacggaacg aataccgtat cgaaaatcag cggttaaggg atgagaatga acggttgagg
     7861 aggattttgg aatatgacag cgattgataa cacgcttcgg cgaggaattg ttgaagttta
     7921 ggaggtttgg atagtgcaat atatctttca gaaatacaca tgagaattat acgtctataa
     7981 acaatgcttg tttgcaagat gaaaggttag aaccagccac aattggcatg ttagcggtaa
     8041 ttttatcgaa caaacctgat tgggttgtat atcctgagga aatagcaaaa agaatgggag
     8101 ttagcagaca gtttgttaac aagcatttca aaatactaga agaagctggc tacctatttg
     8161 tgattaaaaa aggcggtggt cgagctaaag gagtaactcc ttttcgattt tttaacgaca
     8221 aacctttcac tgataaattt aaggaatata tccagcagaa actagacgaa gagttatcca
     8281 caggtaataa cgttcaatga tttacaactg ttaagtttta cacttttgta aaatacaaca
     8341 gttgaaagtt acatttttgt aaaatacaac agttgtatct gtgccactaa taaatactaa
     8401 ctatataaca agtactaacc ttaataataa tctaggggct atcgcccact aataaacaat
     8461 aagaggctaa agcctctaac taacttaaaa acaaactaat cgttatatat aaataatata
     8521 tatagggatt tacagaagtt atccacagga ggaaaatcat gaaacaaaat aacacattta
     8581 tcgtattgcg agataaagaa gggaactact tagctgggtt cgaaaacaat ccacaggttt
     8641 tggcatattc ggcagattgg gttagtgcta ttaacgaggc tttgacaatc ccggaaaagt
     8701 acttttatgg tgaggataat gagcaatact tagcaatgac aaagatgttc gatgctgaac
     8761 taataaaggt gcaggcagaa tataccttga caactttgga cgggcaagag ccagctgaac
     8821 cagtcaaaga tgctgatgat acagttggaa cgtttttttg aaaaaatgct ttctgatatt
     8881 ttgggagaag actaataagt gtcaggttgt ttaggaggtc gctatgaaat tgagagagcg
     8941 tgaaaatctt gtctggcaac gtgccacggc aggagagaag gaaaagttac tggatacagg
     9001 tctagctgat aaagcagggt atatccgcct tgtcagagag ctaggtagaa agtatgtggc
     9061 ctaggaggtg cgacatggac ggtacttacc catggtttga ctatgaccgt gactatctac
     9121 aacctgagga accgagacag gtgcatgatc ctgatgaatg ggtgttcaga ggcggtcaat
     9181 ggatttatgt aggggatgca taacgacaga ggaattacta gatacaatcc gacggctgag
     9241 gtgtgattat ttccacctgg gccgagagct gggcaagatt atcaacgaac aacaggactt
     9301 gatacttgcc ctgaaacgag aaaataaacg cttagagcgt gaatattgga atttgaaaca
     9361 gacgaagagg agaaggaaat gacaacaaat caagtagtaa cacacaaaaa cttttttaat
     9421 gccccaaacg ttcaaaaatc gtttgatgac gtttggaaag gcgcaggggt acaattcgca
     9481 acaagtatct tgtctgttat ccaaggcaat gcatcactaa aatctgcatc aaacgaatca
     9541 attatgacat cagctatgaa agcagcggta ttaaacttgc cgattgaacc aagcctaggt
     9601 cgtgcttatc tagtaccata caaaggacaa gtacaatttc agctaggcta taaaggtttg
     9661 attgaactgg cgcaacgaag tggcaagtac aagagtatca atgcaggtcc ggtttacaag
     9721 agccagcttg tatcttatga cccattgttt gaagaactga ctcttgactt tactcaacca
     9781 caagatgagg ttgtaggata tttcgcaagt tttagtttgt taaatggctt ccgtaaactg
     9841 acctattgga caaaagctga agttgaagcg cacggcaaga agttttctaa aactttcggc
     9901 aacggacctt ggaaaacaga ttttgatgca atggcacgca agacggtgtt gaagcatatc
     9961 ttgagcatct atggcccttt gtcagtggaa atgcagacag gaatgcagag tgatgaaagt
    10021 gagaataaca acacgtcaag agatattaag aatgccgagc cagttcaatc agccgggcag
    10081 gatatcctgg ataagatgac cggcaagatt gttgctgaag aacctgcaaa agatgtaacc
    10141 atttccgaag tggaagctgt tgaagaagta ggagtggata tttccaaaat ggaaacaacc
    10201 gagcaggtca ttgatgccga aaccggcgaa atcttagatg aggaggagcc gttctaatgt
    10261 ctgaagaact atctctattt gacaatctgg aaagtatggc accagttccg acagcgacag
    10321 tattagattt tgactttgaa ttcacaccag cccaaatcac tatcgtgggc aaggatttgt
    10381 tggagcaggc acttactgga tacgttgaaa aatacaagaa ttacaccgtc acggcagaaa
    10441 catttgaaga cgatgccaag gtccgagctg agttaaacaa cctgcagaag aaggtcaagt
    10501 cagctgttaa agaaaaattg gcagattaca acaagcccat cgacgaggtc aaggcttggg
    10561 tggacggctt gttggaacct attgccaaaa tcggtaagtc gattgatgaa ggtgtgaagg
    10621 cgtttgaaga acaggaacga cttaaacgcg ccaaaaccat tgaggaacta ttccaggaag
    10681 ctattgcgaa cacaggaaaa gatattgaca tccgtttgtt cagcaagtat tttgatgagt
    10741 tttctaagaa gacgtgcttt atggctgaca atgttcgtcc caataaagcc acagtcaata
    10801 tggttgccag cttggtagag gaagaagtgg ccaagaagga agaatatgag tcagcactaa
    10861 tcaaaattac tgaagcagct gccaaagcag actttggtcc agccccttac gtacgtaatt
    10921 ttgaacaagg agcaagcttg gctgacatct tacaggcaat cgctgatgac aaggctctgg
    10981 cagatagaac ccgtgaggag gttaggcgca agcaacaact ggcaaaacgg attgaagagc
    11041 tgactgctat cgcagagagt aaaggtctga acccgaagaa gtatgccgat atgctcgaat
    11101 caggggtatc tgcactagcc gtccacgaag aacttgtcaa tgacgcaaga aaatggcaag
    11161 aagagcagga ccgaatggaa caggaattct tagctcaaca tggagctatt tgtggaaatg
    11221 ctcaaaatcg cccaaattct gacgaaattc aacgagaaaa tgcgtcagag ggtaaatata
    11281 cctccgaaca gaaaaacgcg tcagaggata aaatagagct gaataagaag gtggtcaaat
    11341 ggcaaggtga tttcagaatt actttcccag acggagagac cgctaagtta ttcggtggtc
    11401 caggtggttt gtatgaacaa catgggatag ttgttgagaa attaggggag tggacgaaaa
    11461 taaatgacta aactaactga ggagaattac tatcaagacc gtcaatggct ttcaaattct
    11521 cgctttaagg cttatatgga ctgcgaagcg aaagctaaag ccattgatga caaggagtgg
    11581 acggacaagc gtgatgatac tgccttgctc gtcggcaatt atgtgcatag ttatttcgag
    11641 agcgaagaag ctcacgccaa ttttattgac accaacaaaa ctaggatgat ttcgagccgt
    11701 ggagcgacta agggcgaact gaagaaagag ttccaagttg ctcagaacat gatagatgct
    11761 ctgaaagatg acaaagattt cttgcctctc tatcacggca acccaggcga cgatgtccgc
    11821 aaggagatga ttttagaagg cgaaattttc ggtatcaagg tcaagggtaa ggtggatagt
    11881 atcaacttga ctgaaggcta ttttgtagac ctgaaaacta tgaagactat ccgtggtctt
    11941 gaatggtctg acgtggaacg aaagaaaatg cctggagctg ctgctaacat tttaggtttt
    12001 cgctacgatg tccagctggg gctgtatcag gaattgttgc gacaaatggg ctatccaaat
    12061 ttcgttccgt tcgttgtagc tgtcagtaaa gaagatgtgc ctgataaaat gcttgtcgat
    12121 ttaccgcaat atcgcttgga tgaaggtctg caattcttcg aaaataacgt cgaacgtgtt
    12181 gcgggtatta ttgcaggcga aatcaagccg aaaggttgcg gaaattgtga ctactgccgc
    12241 agcaagcgaa ccctggaccg tgtaatcaat ctggatgatt taatcgcggg gatattttag
    12301 aaaggcgctt taaatgacaa attttgctga aaaaatgaaa cagttgaagg aagaatctat
    12361 agctgaattt tctctggtag ctggaacaat tggtgaagct agagagttgc tcgaattggt
    12421 caaaagtaac ggcatcaaat ggttcagcgg agaaccaatt gaacatatgt ctgaatatat
    12481 ttataaaaaa atgcaaacat acccagaaaa aagatttgtc ctaaatttcc gaaatggttt
    12541 caacctgaag aaacaattga caatcttttg tacctgggaa cacagataac gtgccgtgaa
    12601 ccacgaaaaa agcgaactag aaagcgtgtc aattggaaac aatcagttga cagttggacg
    12661 atagcgactg cccgtattta gccaaactca cacaatggca gtcgctggat tttagaggtg
    12721 aatatcatgt caacaattaa aaaaatggga gaaaatgacc caaaaatcag atattaaaga
    12781 cctagctaaa aagctcgggg tatagcgttt taatagccgt agtaaaaatg ctctttgaaa
    12841 atttaataaa aacacttgac tttatggtaa cacaatatta taattgttgt gttaccaaga
    12901 aagagaggtg aagcatggta gcaaagctag gaagacctaa aagcgaaaat cctagacatc
    12961 acaatacccg aattcgaatg actgatgatg aattaacaat gcttgagtat tgttcaaaag
    13021 tcactggaaa aactaagacg gatattttaa tgttagggct tgaaaaagtc tataagagta
    13081 taaaaaaata gcgtacaacc cgccatcgcc aaactttggg tcgtacacta tcgccacaga
    13141 aagtgtttct gcatgaaata ttatatcatg caagacactt cttttcaaga tgcacaaaag
    13201 gagtgttttt attatggcta aaaataaaga attagaagag attatcaacc acatccacct
    13261 tgcttttcgt gaaagcgaga agtcggcaga acttatgcag tgggataatc tcatctcgat
    13321 tgttatcaat cgtgattttg atgaaaagaa agcaagtgta ttcttcgagg ctcacgcttg
    13381 cttattacat acatttgcta atgagttaat tgaatttgtt ttagattatt ttgtagaaga
    13441 agaggagaac taatatggaa ttgcaaattt ttaagaatga acagtttgga gaagtgcgta
    13501 cagcggacat caagggagag gtttatttca acctaaacga ctgttgtaaa attttagaat
    13561 tgagcaaccc acggaaaacg ctcgaacgac ttaatccaaa gggtgtaact actagtgaca
    13621 cccttacagc tggaggtatc caacaagcca actttatcaa cgaaagcaat ttctacaagt
    13681 tggttttcca atctcgtaaa ccagaggctg aaaaattcgc cgattgggtc acatcggaag
    13741 ttttgccaag tattcgcaaa aatggggcgt atgtcactaa tcaaaaagct gttgagatta
    13801 tgtctaaccc aaatgctctt ggtgagttct tgcaaggaat tgctaaccaa gtgaaacaat
    13861 tagaattgca gaattcaaat ctagttgaga agaatgaggt tctagaggtg gaactgcttg
    13921 aggctcgcaa gcaagctcgc tacctagatg tgatcatcga gagcaaagga gcggttcgtg
    13981 tgacacagat tgctgctgac tatggtatga gtgctaatca attcaataaa ctcttgcatg
    14041 agttgggtgt tcagcataag gtcaacggac aatggatttt gtacaaaaag tatatgggca
    14101 aaggatatac cgatagcacg acatttgatt atctggacaa gaacggtcag gctagagcca
    14161 atatgacaac aacttggacg cagaaggggc gtttgttctt gtatgagtta ctaaaaaata
    14221 acgacatctt gccattgatc gaacaagatg aagtagcata gtgatagtca catgaaattt
    14281 gaaataccta tcgaacctaa accgcagagt cgtccaagag ctggaaggcg attaggtcgg
    14341 acaagagttt atgaagatga caaaatgacg gcttggcgtg ataaatgtac agcacttgtt
    14401 gcacaacttt ataaaggccc gtattttgat aaggctatca aggtcgaggc gacattctac
    14461 atgtctgcgc ctaagtcaat atctgagcca cccaaaccta agtccaaagc taagaaagtg
    14521 caacagtatg atgactttat caatgagcga atttatgtag atataaaacc agatctagat
    14581 aatctggaaa aagcggtcta tgacagcatc agcaaggctg gcaatgtttg gacggatgat
    14641 aacatcattg tcgagcatac aacgagaaag gtgtacagtc ctagaccgag gattgaaatt
    14701 aaagtggagg aagttttatg acacaaatga tttatgcttg tacttgtcct gaatgtgagg
    14761 gacaagaaga acaatttaac aacgtaacca aaccaaaaca ttaccaaggt aagtatggta
    14821 tggaagcttt ggatgtggtc aagaatttta tcggcaatct agccggcgaa tctgcttact
    14881 actggggcaa tgtcatcaag tatctgttgc gatttcagca gaagaacggt gtcgaggact
    14941 tgaagaaagc tagacaacat ttggattggt tgattgagga gatggaggaa agtaatgaaa
    15001 ataataagtg atatgaaaag actattttgt aaacattctt ggaaggaatt accgcgcttt
    15061 atcgcgttga atactgggaa aatttctcct aaacgtcaat gcctaaaatg tgggaaagcg
    15121 gaggaaacgg atgaataaaa caattgaaaa cgtaaagata accaaaactt tcttgggcag
    15181 agaagaccat ggaattttaa cttgttatct gactgttgag ggagatggat ttggggtatc
    15241 tattggagga tactgcctag ataaatacga cgaaaacaag cggaagcgtg tagcttatca
    15301 taagagcttt gagctgattg accgtatctt ggaagttgtc ggtgtgtcaa cttgggaaga
    15361 actgcaaggt aagtatatac gtgttaagag taacggtttt ggaggtagag taacgaagat
    15421 tggaaatctt attaaagatg attggttgga ctttgatacc tttttcaagg aggaaacaga
    15481 tgaataaaca ggaagcgata gagattattg agcaatcaaa aataaaaata gctaacagag
    15541 ggagggtaat atttaaagca ggcgaaatta tagtagaaaa tgtacaggtc gattatgtac
    15601 cacttgaagt tgttgtgaac acgattgacc aaatccatga accacagaag gttgtggtgc
    15661 cgaagtttat cgctgatagt atcgaatatt gcaaaaatga agaagggtat ggattgctcc
    15721 gtgcaatgga ttactgcgat gaatacaatg atactggcga atggttagag cacaaccaag
    15781 agactttcgc cctagcgtgg cttttcggct atgagattga gcaggagaaa ctgtatacgg
    15841 tggagttgtt taatgggcaa ccacttgtag aagaaaagaa tattttgtat ttcagttcgg
    15901 acttggccgc ttcaaatgcc catgtgggta aagacaagct tgaagcagct ggctttggtt
    15961 gggtgtttga ttgcaacggt gtgaaggtcg tggaggtaaa aaatgattaa gaaatatcat
    16021 cgagttaaat gcgaactaca tggatggcta aattgccatt atgattatga ccaagataaa
    16081 tattcgactg ccgaagctat tagcgatttt atttattcga taattgatga ttttaaagta
    16141 aaagcaaaag atgtcacggt tgaaacagtt gaacggtcgg aggtggagtg atgaaacaat
    16201 tattaaggtc tgttggattt atactgatat tttattcggt tgcccctaac atcatccacg
    16261 agatgacgct tgctcagaag ataatgtttg gattaggcgc tagttggcta ttttatgaag
    16321 gaggcagaaa atgataccga agtttagggc atataaccca gcaactaaca actggtataa
    16381 ctcagatgaa gttttcgttt gtgatggaaa aatttatctt aacgatgatg atttcgagga
    16441 tttgatacaa aataacgatg tcgaactcat gcaatccaca gggctgtttg atatcaacgg
    16501 caaagagatt ttcgaagggg atattgttag aatgcactca ggagagcttt taccagtaaa
    16561 gctacaccac ggtatgttcg agcccgtttg ctattacgcc agccgtgcct ttggaagggt
    16621 tgggaatgtt tttgaaaatc ctgagttgtt agaacatcca gattttaggg aggtaaacaa
    16681 tgagtaacga aaaactaggt gtgctactgg ttgatgtacc agatataatg ttttttaaat
    16741 acaactacat tatagacaca gaagaagttg gcgcgagtac atttattata aatggaacag
    16801 attttttaga aaaattagag aggttagcct acaaatgcac ccaagaagaa gctaaaaaat
    16861 acccacagtt taagtgggtg gcgttggagg aattggtatg actattaaag aactaatcaa
    16921 tgaattgcag atgtacgacg aggacaaaga ggttgtttta acgatagcca acgtgcatcc
    16981 agttttgcac gaattaatag atttggaaac tgggttggtt cgtctttcgt cggattgtca
    17041 aatcggcttt gaattcaatc ttttatcaga caatcgtctg gaaattgagg gggtgtggta
    17101 gatgactaca gcagataaaa tcaaacacat cctgcaaaag acagggtgga cgagagagca
    17161 atttgcgtcc gagatgggtg tgacgactct atctgtctac aaatggctag acggacgacc
    17221 accgcggcaa cgcatgttgg ataaaataga cgagctgtac gagcaagtca agccttatga
    17281 gcctagggcg ctagctccga gagggaaaat tcgactggtg tacccgtatt atagccatca
    17341 gcgacagccg tgggaaaaat aaaaaagcca aggcactctc tgccctggct gtggtaaata
    17401 actcacatac attataccgc aaaaaggaga cagagagtga acaaggctaa ggctatatta
    17461 aaagatttga gaaatttaga tttgtacatt gctagcttga ttagacgtcg tgaaaaaatc
    17521 gaagcctcct tactatctag tccaaagtgg acagcggata aagtttcggg cggagcgaaa
    17581 aagaagcagg atgatgtcta tgttgaattg atggcaaccg ctgatgatat agaaaagaaa
    17641 actgctgaag ccattaagaa acaacgtgaa ctacaaaata taatagacaa tttaaatgat
    17701 gacaccagca aaacaattct aagcctggtt tacattgaca agatgtctat gtatgatgtg
    17761 atggacgaaa tgagaattag tgacaggact tattacagat tgctaaggat tgccaggaaa
    17821 gaattggagc aagtttggca gtaaatggca gtttttggca gtaattgtca gtgcatggca
    17881 gttttaatct gctagaatgg tagtatcaag aaataagggt aaggcagtaa gccttccctg
    17941 acatggagag ttggcagagt tggtcgaatg cgcccgtttg ctagacgggt ggccgcctac
    18001 gtgcggtccg tgggttcgaa tcccacactc tcctttgagt gtttgtgtcc cagaatgggg
    18061 taagtcgttg gacgagaatt catatatcac tcattaactt tgaaatggtt gcggatgcga
    18121 ctaggccctg catgattgca cagctactta tatcctaggt aagttataag ctgggtggtt
    18181 tgattccgct aggggtcttt ctcctatatt tttcccacac aatcgtgtgg cttttttaat
    18241 tttgagtgga ggtgatagaa aatcgcgaag agaagagaaa tggttgatga atttggtctg
    18301 aatagtcgtg agcgcaattt tgcagatgag tacatcgcta atggtaataa tgcaacgcag
    18361 gcttatttaa aaatatatcc aacctctgga gaagctaatg ctgctaacaa aggcagtgca
    18421 tgggttagaa aaggtgagat tttgaactat atcaaaatca aaaccaaaga aagacttgat
    18481 gcttcagggc tgaaatcaag cgatattatc gatcgtctta ttgatatcgc ttttgggcgt
    18541 ccaattatcg gatatagcaa gcagacagat aaattgactg gcgaggtcat taagcacatt
    18601 gaatatgaga gcactgctcc tattgatgag cagattaaag cgcttgaatt gctaggtaag
    18661 tatctcaaat tatttactga caaagtcgaa gctgaggtaa acggaacggt ggtgtttgct
    18721 aatgaagcag acatcccaga ttaacgttga tttgccaaag attgtcggta agggttatgg
    18781 tcagttttgg cggtctagga atttttacag agtcgtcaaa ggcagccgcg ggagtaaaaa
    18841 gtcgaaaaca accgctttga acttcgtagt caatctgctg aagtgcccat gggctaatct
    18901 acttgtcgtg cgtcgctact cgaataccaa taagcaatca acttatacgg attttaaatg
    18961 ggcctgtaac cagcttaaag ttagtcataa gtttaagttt aacgagagtc tgccagagat
    19021 aacagttaag gctacaggtc agaaaatcct ctttcgaggt ttggacgatg agttgaagat
    19081 tacatctatc acggttgatg taggctctct ttgctgggct tggtttgaag aagcctacca
    19141 gattgagact gaagataaat tctcgacggt cgttgaatca atccgtggta gcttacaaga
    19201 tacttcggca tttgctttca atcgactaga cggtacatat ggaaacgtgc cgttttacaa
    19261 acaaatcacg gtcacgttta acccgtggaa cgaacgtcat tggcttaaaa aggtattttt
    19321 tgatgaagat accaaacggt cagatactct ggctttgaca actactttta gatgcaatga
    19381 atggctagat gaggttgata ttaagcgata tgaggacctt tatatcacta atccacggcg
    19441 ggctcgcatt gtctgtgatg gtgagtgggg agttgccgaa ggtttagtat atgaaaatgt
    19501 ccaggttgcc gattttgaca aagagtcgtt attgcaatct gggaattaca agctgtgcgt
    19561 cggacttgac tttggtttca cgcacgaccc gaccgctctt gtagcttacc tcgtagatga
    19621 taaaaataaa aacatctatg tctttgatga gcattatcaa gtcggtttat ttactaagga
    19681 tattgcagag atgataaaga acaaaggata tgccagtagt cagattgtcg cagattgtgc
    19741 ggaagctcga cttatcgaag aattgaaatc ggagcatgga atccgcagga ttaaggcaag
    19801 tcgcaaaggt aaggatagtg ttatggctgg tgtgtccaaa ttgcaaggat acaagatagt
    19861 agtacatccg tcttgtacac atatcatgga cgaattctac tcatattgct accagcaaga
    19921 caaggaaggc aagtggttga ataaaccaga ggataagaat aaccacctta tggacgcact
    19981 gcgatatggt ctgcaatgtg cagagcgcaa agaatggctc tattagaaag ggaagtatgt
    20041 tagatgtgaa agatatatcc caagttgaac gagggataaa aaagttaatc gacaatgacc
    20101 tcactgacca aagcaaagag aagatgcgga cagctttgga ttactacaga ggtaagcatg
    20161 atattttgga ttatagactg tactatattg atgatattgg tcaaccaaaa gaagaaaaat
    20221 acagaagtaa tacaaaaata gctcatggtt ttttcacgga gctagttgac cagaaagtcc
    20281 agtatttatt gtcaaatcct atcgagattc agacggaaca acaagagcta caggaatact
    20341 tagctgaata tgtcaatgaa gaatttcagc tagtcttgca ggaattagta gaaggggcta
    20401 gtcaaaaggc tgttgagtat gttttttggc gaatagataa agatgggcgt ttggtttttg
    20461 aggtagctga tgccttgaaa gtgattccta tctacaatca cgacaatcag atggaacagg
    20521 tcttgtacta tgttaaagac gaaatagttg tagatggaaa aaacaaagaa gtaaagaaaa
    20581 ttcagctttg gacaaaagat gcaatccatt atttcgttta tgcggataac aaagtcagat
    20641 tagatgatac agtgaccgta aatcctaccc ctcatttatt ggtaaaggac aagaaaaacg
    20701 aagaggtcct gggcaagggg catggtcgtt tgccttttat ggtcttgcat aataatcgcg
    20761 agaagttgac agatcttgag ccgatcaaag acctaataga cgattatgac ttgatggctt
    20821 gtgcgttatc aaataacttg attgatttcg accatcctat ctatgccgtg agaggattcg
    20881 aaggggatag ctttgataaa cttgttacca atttaaaagc aaagaaaacg gtcggtgttg
    20941 gtcctgacgg aggacttgac gtaaaaaccg tagacatccc catcgaagct cgtaaagaga
    21001 aattgcggat tgacaaagaa gccatctata agtttggtat gggctttgat agctcgcaga
    21061 ctggcgatgg gaacatcacg aacgttgtta tcaagtcgcg ttatagtctg ctagacctca
    21121 aatgcaataa aattgaagtg cgtttgcgca ggattattaa gcaaatgtta gagttgattg
    21181 ttgaaaatat caaccagagg tactctaaag cctacaatac ctcagatatc gaaattatta
    21241 tcactcgaga cataatagca aacgaagtag ataatgcaac tatagcaaaa acagaagcag
    21301 atacgaaaca agttgcaatt caaactatct tagatgctgc gcctcgctta gatagtcgta
    21361 ctgttttaga actattagct ggcatacttg aaattgatcc tgatgaggtt gaaaaagcct
    21421 tagacgaaga ggagtatcga ggggatttag agcaagatac ggaggtagag gatggagttg
    21481 aaccagtatc agaaggagat gcaacatcta ctacaactac aggaccagag ggttaatcgc
    21541 cagttataca acctttacgt ggatatcgtg aaagagctga aaaaatctct attggctgag
    21601 tatcaaagct acgaaaatct atcgcgtagc aaaaagatgg acttgaagcg catgtcagct
    21661 atgctagaag cgattgacag ccagtctcag aagcttaaaa caggtctgaa tggtacaata
    21721 ccagaccact tagaaagagt cggtaaaatg gcttataatg agctatttta cgaatatgag
    21781 cagacgaggt cagcaatcca attcgctttg ttgccagaag aagaattgaa gacgattata
    21841 gagactcctg tagcaggtct gcgcttgtct caaagaataa acgatggagt tgtgtcggac
    21901 ttacgaaaga gtatcaaaag cgagctaaca cggtcgtttg tgcatggatt gagttatcaa
    21961 agaacagcta aaagactatc agagttgggc agttcgtctt atcgcagagc gttgaatatc
    22021 actcggacag aagctggcag agtatcagct atcgctcgtc agaggtcgca aaaagaagcg
    22081 gttgacctag gcatagagtt caaaaaaatg tgggtagcga cactggataa acggacacga
    22141 aatacccacc agcacttaga cggtcaacaa gttggtccag aggagtattt tgaacataat
    22201 ggtttgagaa ctttacagcc ccacatgttt gggatagcca gcgaagattg taactgccgc
    22261 tgtcggacta tatctcgctt aaaagatgac gatacaccgc tgttgcgtag ggatagcgaa
    22321 acaggagagg ttgttgagta tcggaattat cgagagtggg agaataaaaa actttcgtca
    22381 gtagaagtag ataccagtcc gaaaccatat gattttatag atttaagcaa tccagaaaat
    22441 cagacgatag aaaacttcga gataatactc tcgagagcca aggttgctgt agaagagtat
    22501 aagaagcata caggaattga cttggtttct gaatttaata ataagaattt taggtcaatg
    22561 tctaatccat atgatgataa taaagcaaaa tttctcaaat ttttgtataa taagattggg
    22621 tatgatgcca aaccacaaaa gcttagtgat acaaaaggct acaacttatt ttatagaggt
    22681 attactggta gtaaagagac tggttcaacc gcaaaagatt tttataatag acttgttgac
    22741 ggtgaatatg atttctctgg tgctatgtca tctatggttg ggcgcggtat ttatttcagt
    22801 attgaacagc gaatgggcca agtttatgca aaaaatggta tattagcaga aatgtatttc
    22861 ccaaaaaatg ctaaagtcat agatgatcaa gttttaaaaa gtttcagaaa tgctttctcg
    22921 aatgaacaat tatctaatcc tgaattagcg gcaatcaacg acctaataaa ctatgatatt
    22981 ggacctaaga ttaatgtggc tggagataga cattttgatt tttgggcaat ttttagtggt
    23041 cacgatgcag ttcaaagaga taattatgag atattagcag tgtacaatcg tggtgttttg
    23101 ggggtgaaag ataatgatta aaactacata caccttgtta atttcagcgt tcagtctgat
    23161 tgaatacgaa aaaaagtatc agaattttga tatgtttgac caattaaaaa aaatcactcg
    23221 tcgcctagat atgaaaaatg caccggattt ctatccaatt acattagatg atttttctga
    23281 cacgtctata agtgatgaag ataaagcgat attatttgat tttatcaagc aaaaccaaaa
    23341 caagttagat gagcacgaag actcatttga tatttttgta cagttagcac ctagagaaat
    23401 ctaagtgctt ttttgtacca aaaaacagga ggaaacatga acagagataa gaaaccaggt
    23461 atggaaactg tcaaaattgg cggtatagtt tatgaagtca gcaagaaacc agatttgcag
    23521 ggtaaaaccg gtgaatgggg acatattgag tacaagacag gtaagattgc gcttgatgac
    23581 tctaccagtc agcaaattga agaccaaacg cttatccatg agatcgctca tgggatctta
    23641 gttgaagctg gttacgtgca acatgaggaa gaacaagctg accgcattgg caaaattttg
    23701 tatcaagtgc tgaccgacaa tgatttcagt tggttgtgga aaggaggaac caatggctag
    23761 tttttcaatt gacctggagc taaactggga gaaccaagac gaacttcaac gtttgctgca
    23821 aaatgtcgat aaagcccaac aagcgtacca gaatgctttg aaagaattgt ctgagttcaa
    23881 accagacatt caggttgttt ctaaaaatgg aggttacaag gcacacgaat aaacgtatca
    23941 aaaagaaacg tgaactgatt gaacaagttc agggaactaa agaagctgtt gatattgcat
    24001 tgaatatcat taaaagtcta cttgatgaaa acgccaaaca agcaaatgaa attgccgagc
    24061 tacgttcaat catcgaacgc aacgcccagg ctacgaattc gagatttgac aaaatcgaga
    24121 agcaagtagc taatagtaat gctaagaagc cgttttggaa acggtaagga ggtagttcaa
    24181 catcttgaca gcaggaaaga ctgcaataat tacatagcct aaccgtgtcg aattcgatgc
    24241 ggttttcttt atgtcctgtc gcatgacgga aaactaggca actacccaaa ttgtcgcagg
    24301 gtatattgtg acaactcccg caaggggaga gcccctaata aaatctatgg aggtaaccaa
    24361 taatggattg gttgaaagaa cttatcgaga aacatactgc agagggtaaa acagacattg
    24421 atgcggtcat gaacgcagtc aaaaaagagt tcccgaaaca cgctgtcccg aaagatgtct
    24481 acaacgagca ggctgagaag ctaaaagtcg ctaacagcac gctagacacc ttgaagaaat
    24541 caaacaagga caacgaagag ctgcagaatg aactcaaaac gtacaaggac aaggtgtcgc
    24601 agctagaagc cgaggcaaag gaaacagcca agaaacagac aattaaggac gcgctgataa
    24661 atgctaaggc gactgatgta gactacctca tgtacaagct tggcaacttg gaggaagacg
    24721 atagcggaaa aattaaggat ttagaccaaa aaatcaaaga tttacaagtc aacttgccga
    24781 acttttttga atctgctgaa gcaaaagagg ataagctgaa tggctatgaa catttgggcg
    24841 gtgcgggtct cttacctggt tctgcagagt ctacaaaaga tgttatcgac gttattggaa
    24901 acaaagaatt gaacttaact caattcttac aggaaaaagc gaaaggatag aaaaatatgt
    24961 ctaatgaaat tacaaaaatt attgatacga tcactccaaa ggtatttaat gcttacatgg
    25021 accagtatat caacgaacat tcgttgctag ttcgctctgg tgcggttgtc gctgacgaac
    25081 gtgtatctcg aaatattacg gctggtggtc taaccgttaa catgccgttt tggaacgatt
    25141 tgagcggaga ggaccaagtc ttatccgaag acaaagaaat cgaaacagga aaaattactt
    25201 ctggaaaaga tgtagcagct gttctttacc gcggacaagg ttggtcagta aacgaattgg
    25261 ctggtgttgt ctctggttca gaccctatgc gcgctatctt agatcgcatt ggtggattct
    25321 ggcttcgtca agaacagaaa gtgctaatgg cggtactgaa agggttgttt gctacgagcg
    25381 gacctcttgc agatactcat ttgttggatt taagtaaaaa aactggaaaa gcagcagttg
    25441 tggacgctaa ggctatctta gacgctaagc agttgatggg tgatgcttct cgcaaactca
    25501 aaattttggc agtacattct tctgtttata ctaaattgca aaaggataac ttaattcaat
    25561 acatccaagc taccgatgca aatattcaga ttccgactta tttaggatat acattgttag
    25621 ttgatgatgc attggctcca gaaggtgacg tttacacatc atatttgcta ggtagtggtg
    25681 cttttggacg caatacaggt catccagaag gtttgacaac attcgagaca gaacgcaagg
    25741 ctgctgcagg ggtagacaat gtctatactc gtcgcgctct aacaatgcac ccgtatggtg
    25801 ttcgctggca agataacagc attgtaggat tgactccatc aaacgcagaa ttggcaactg
    25861 ccgaaaactg gaagaaagtc tatgaagaca agaacatcgg tattgtggct attcgtcaca
    25921 aattagcgtt ttctagcgag gtgtaagcat ggataagtat attacaatcg atttgttcat
    25981 tgatacagat gatgatcgtg tggagtatcc tattggtgct ctctatcctc gtgaaggcta
    26041 caccccttca aaagagcgta tcgactctct tttgagtggt gacaatgcta ggggtgtacc
    26101 gttgattaag caaattatcg aattgccagc aaaaacaact attccatctg acgctgaaaa
    26161 cgaattgact cgagatgccg tcaaggagaa attgacccag ctaggcattg agtttaatgc
    26221 cagggctaag acagagagtt tgctggaatt gttaaaaaca gccgaagagg agtagttgaa
    26281 ctcctctttt ctttttgagg aggttctata tgattatatc tttaagtgag gctttaatta
    26341 ttcatccgaa agcaacacag gaaatgtgtg acggactaga aactatggtt cgcaaggtga
    26401 ctaataacca ttttcagcta gaaaagttcc gcttaacgca tttgtcgttg gaaggttcga
    26461 ctattaaagt cgataaagga cgtctggata tttttcgaga gggagacaca gtcgaaatta
    26521 acggtactga ttttaatgac ggtttatatg ttatttccgg cgtctctgac ggcattttgt
    26581 ctgtcaatag tacatttata ccggaatcta agaaaggggc tattttaacg aaaataagct
    26641 accctgcaga cgtgattgaa ggtgtaaaga aactactatc atatgatgct aaaatgacag
    26701 ataaaatcgg agtgaagtct gaatctgtcg cacgttggtc tgtaacttac tacgacgtga
    26761 cggcttccga gagtcaagaa ggctaccccg cagttttgct aggttttttg tcaaaataca
    26821 aaaagataag gtggtcttga agatggaagt ggctttactt aagtatcggg aaagtgggga
    26881 aaacgcccta ggtcaaaaag tttacgattt tgtggaatcc gaaaaaatgg aaggttattt
    26941 ggatatgctt acgggcaacg aaacagatag agcaacagct ttaacatcta gcactcacat
    27001 ctttttgacg aagcaggtag atgtccaaat tacaacaaaa gatagaataa gggccaaagg
    27061 aattgattac gaagtttcat ttgtagacaa tccagtcaat cttgatcacc atctggaaat
    27121 ctatctgaag gttgttgctt gatgaaattt atagacaata gcgccaaagc taaggaagag
    27181 attaaatatc aagctattcg tgctctgaaa gaaatttgca tgatggtaga ggcacaagcg
    27241 attctactcg ctccttcgga tactggaaat cttagagagc atatcagtca cacggttgat
    27301 aggcacgaat tgattggcta tgtagggact aatgttagtt atgccattta tgttgaattt
    27361 ggtacgggtg agtttgcaga aaaaggaaac ggacgcaagg ggggatggct atatacaacc
    27421 cctgacggga agtcgtattt cactcgtggg aataagcctc aaccttatct acgacctgct
    27481 tttcgtaaaa acaaaaaaca gatacaggcg atttttgaaa cgtatctgag tcagattgga
    27541 ggataaaatg actcctgtaa ttgctaaatt gacagaatta tttaccgaaa ttgttcctga
    27601 agcctatttc ttatcaaact caaacccaac tgttgcgtat ccctacctca tattttctta
    27661 tgatgcagaa aatagaaatt ggggtcaaga tggggcttat gttgatgtcg atatttttga
    27721 caataaaggt gaggatcaag agcagattga gcatctagct tttttattaa agcgagagct
    27781 agggcacagg gctgtcatgt cggaagaatg ttatatccgt ttccgtttcg aaggacaagg
    27841 aacgattgat actatgtcag atgtccttca acggcgaaac gtacgatttt atatcacaat
    27901 agattggaga aatgaagatg aaaaaaccag ttaaaaagac aggttatacc aagaatacac
    27961 ctaaaagcta tatcgtgaat gctggtgcgg tgtataaaaa tttaacatgg aatactgaga
    28021 cccaaaaatg ggaaggtgag ctatttggag ctacatcagg cggaaataaa ctgacaatcg
    28081 aacaaaatta tcgtcaaatt gaagtagatg gtgtcttcac tgctgcggtt ggtcagaaag
    28141 ttcttgaaag tcaaggggct aagttggaaa tcaacgctaa agaattgact gctgaaaaca
    28201 tccgtatggc tatcaacggt gttattgagc aaggagatgg tcagaaagtt ccagctacat
    28261 ctaaggtcat cacagctaag ggagagctta agaaaacaga ctacattact aatctaggct
    28321 tagtaggtaa cctttcaggg accaatgaac ctatcatcgt cattttagat aatgctctct
    28381 gtgtttctgg tcttgaattt gagacgaagg ataatgacga agcagttatc acaatgacgt
    28441 tcgaagcgca tgcaaacgaa gaacagattg atgatttgac gttaccgtgt cgcatcatct
    28501 acccaactgt agatatggag gtttaagatg gcagaaaaac ttgaaatgcg agagctaaat
    28561 ggcggagaca tctttacgat gttaggaatc attgggaaat tagatattaa agacgaggtt
    28621 gtagaattgc tggagcgtca atttaaccaa ccagccatcg tcctgcaaga ccataagaag
    28681 aagcagccga caaaagccga gaaagaagcg gcagaattag ctacagaaaa gcgcggtatg
    28741 ttgctgatga cggatattgg ctttgctatc ttgcgacacg taggagaagc caaaaatgat
    28801 gttaacagct ttttagcaga tttgacagga actagtcgaa aagatattga gtctcttagc
    28861 atgttagctt atacaggttt gttgatggat tttgctaaaa aggcggaatt gcgtgatttt
    28921 ttccaatcta tttcttctgt cttggcttag atttgcatcg gctacgtgac attttatatc
    28981 gacgttatgg aaatccagac tctctcttga agtcacaaac tttgaaagag tctttggatt
    29041 tctttttgta tttgtttgat gaagaggata aagatgttct aaaagaaatt tggttagcaa
    29101 aagaagtgga catgtctctt caaagtttta ttgataaaca ctccaaaaaa cgatatatca
    29161 gcaaagtgaa tcgtaagcaa attctagaaa gcgatataga ttctgcattg aaaaacgcag
    29221 aatctattct gaatatgggt tatgggaagg aggtgcgatt agatggaaat ctttaagtta
    29281 tttggttcaa tcggcttaaa aaataaagaa gctaatcaag ctattgatga gacaacggga
    29341 aaagcacaga cagctggaga caagatcaag gatacattcg gtaaagttgc tacgttctta
    29401 ggaactgtat ttgctggtaa agctatcttt gattttggga aatcagttgt agaagctgct
    29461 gcaactgcca aagcagtaca agcacagttt gaccaagttt tcgagggtat ccgcgatgta
    29521 gctgaaaaca agcttaatga tttagctaaa acggtcggtg ccgtacctag tcgtatcaaa
    29581 cctgccttta accaaatcgc ttcgtttgct aaagttgctg gtatggacgc tagtcaatct
    29641 ctagaattta caacacgggc tacagaagca gccgcagata gtgcagcctt ctacgataag
    29701 tctttagaag aaacaactga gacgctcaaa tcttacctca aagggaactt caacgtagca
    29761 gataacctcg gtattctttc gacggaaaca acccgtaacg ctaaggcgac agaattattt
    29821 ggccaaaagt ataaagacct cgatggtata caacaacaag aagtattgct tcggatgttt
    29881 gaggatgcta ataaggtgtc tggagctatg ggacaagcag caagggaatc tgatggcttt
    29941 gaaaacgtca tgggaaatct caaacagaca tgggaagatt tcaaagtcct tgtcggagga
    30001 ccgctgttgc aaccagtggt cgcaggtttg caacttgcaa caaaatggat tcaggactta
    30061 ggtggtaaat ttcaagagtt tgagcctaaa attacgttat ttgcagaaaa actcaaagac
    30121 ttcacaggat ttctaaaaag caatcctgca gttcttgacg gcttgaaatc ggcggtggtt
    30181 ggcctaactg ctgcttggac tagctacaaa gttattacag gagttcttag aggtattgag
    30241 actgcccgaa acactctgct agctgtagga aacggattga tgttagctag gtttacccaa
    30301 tcgggtgctc taacggtagc agaagcaaca caagcggccg ccacaatggg ggctacagga
    30361 gcgttcagcg ccttcaatgc agttttgtcg ctaaacccta tcatgctagt agttggtgct
    30421 atcgccgcac tggttgcagg ccttgtttgg ttctttactc aaaccgagac tggtcgtgag
    30481 atgtggtcta atttcattga atgggcacaa aacgcttggg aaggaatagg agaatttttc
    30541 tctaacctat ggcaatccat cacagaaggt gccatcaatc tttggaatgg catcgttgat
    30601 acgtggaatc atgctgttga aatagtcaaa aacgtctgga gtagcatttc tgaatttttc
    30661 acgaatctgt gggcagatgt gcagacgaca gcaattgagg cttggaatac ctttgttcag
    30721 ggcgtgatga tggttgtcca gccgttcatt gataccttca tgcaatattg gacagcgatg
    30781 tctgatggac tttctcagat gtgggaaggg gttaagatgt ttttccaagg ggcttgggaa
    30841 tttattaaag ccattttcat gggagcagtc ttaatcattc ttgatattgt tacaggaaac
    30901 tttgggcgat tgggtgctga cttagacttg atttgggaaa gcattaaatc cgcaatcact
    30961 atggtctggg acggtatcaa gacctacttt agtggtgtaa tagacgctat cgtagccttc
    31021 ggaactactt attttgagaa tttcaaaaat cttctctcag ctatttggga aggcgtgaag
    31081 tctgcggcgc aaggggcatg ggattggata aaaacaacgg tatctaatct tataaccagc
    31141 ttgattgatt gggcacgttc tacatgggac ggattcaaga attttctgtc aagtttgtgg
    31201 gaaggcatta agtctaccgc aacaaatgct tgggaaaacc ttaagcaagg cgtccagaat
    31261 atcattgatg gtatggtttc gggagccaaa agagcttggg ataatctaaa acagagcgta
    31321 tctgatttgg tgtctagcgt tacaagtatc tttgacaact tgcgtaatat cgatcttttt
    31381 gcagcaggtc aagctatttt ggatggtttc ttaggaggtt tgaaatcggc ttgggacaat
    31441 gttacaggat ttatcagcgg tattgccgat tggattttcg aaaacaaagg acctattgaa
    31501 tacgatagaa aactcttgat tcctgccggg aatgccatca tggaaggtct aggcggtgga
    31561 ctagaagacg gttttgacga tgttcaagat ggagttcttg ggatggctgg aaaacttgtt
    31621 cagaaggttt ctagtgcggc taagcatttt aaagatacag ttgttccaca gatgggcgat
    31681 tggtcgtctt ctcttgattg gtacgcaaaa ggcgaaatca tctcacttcc atccatgtat
    31741 gatgtatcgt ctagcaatct tttggaacat tcgtcagacg gtcagtctaa tagcttgttg
    31801 caaaagatta tcgaattatt acaagcactg cttgataaag atagtgatgt ctatctagat
    31861 ttagaaaaag ttggtcgaat gacctacgac gaacacggaa ggattataga aaggggagga
    31921 taagctatgt tagaactaaa agtagatggt atcagcacta agacaattgt cgagtgtatt
    31981 gtagctggtt taggagaaga tagaacttct tctcctcgtt ttattgagga aactatttac
    32041 ggtatgaatg gaacaaatcg gacaatcgaa gcctacgacg aggtggacag agtgttgacg
    32101 tttcattgcg ctagtcttga tgctgttcgc caactcataa aactatttaa aggcttagat
    32161 aaaaagttgg aattctggca tatcccaaat agtttctact atttcgatta caagagtagc
    32221 agttataaaa ttaatcacaa gtgtagttgg gacgtctccg ttaaaattag cttgaagcct
    32281 tttcgttatc taagtgaggt agaagatgtt gtcttaactc aatcgggagc tatcacaaac
    32341 atgggtgata tttttagcga gcctaggatt gaggtgttcg gaaatggtca aactagctta
    32401 actattggaa atcaagtgtt aagactgaat ttagatacta aagctgttat agagtgccgg
    32461 catgggtatc aaaatgtata tgataaaaat ggaattatca agaatagcat tcgcacatca
    32521 ggcccgttct tcgaaattcc tgcacaggtt acaagtggtg ttgttttggg ttccggaatc
    32581 aatagggttg taattcgtcc tagatggagg tgcgaaattt gattagctta aaagataaaa
    32641 atgttttgct tgtcaatgct tttgatgatg aaatcgaaca agagggtaac ggcaagtatc
    32701 aactttcttt taaatacccg acatctgatc agcgttggaa aaacatagaa ttagcagatt
    32761 tactgttagc agacgatttg catggcgagc aggagtttcg agtttttgag attgtaaaac
    32821 gaaatggtta tatttttgtc tacgctaatc aggttgtaga tgatttaaac agctactcga
    32881 tcagtaacat ctctgtagat agagttaatg gtcaaactgt tatgcaagct ttggcaggca
    32941 gtattatccg aaaacatccg ttcgcttttt atagtgacat tcaggatagg cacgttttta
    33001 accaaaaaaa catcagtgtt atgggcgctc tggcaaatgg taaacattcg attattggac
    33061 agtggggtgg agatttagtt agagataaat ataacgttaa tttgttaaaa cgaggagggc
    33121 gagaatcaga agctcttttt atgtataaga aaaacttaaa atcttatgca gaaacaaatt
    33181 ctataaaagg gctatttact cgtttaaacc tctctgttaa gaattcggac ataaaaacaa
    33241 ccgtagacag tcctttgata ggctcttatg gcgggagggt ttatgagtta aacgtcgagg
    33301 ttgcagatca agatgtggca actttagagc agctgcaaga gtatggtcgg aactattttg
    33361 cagaaaaatt aatcgatgta ccaaacaata gtttgacgat ttcggtcaca gacagtcagg
    33421 aatatgatgt ccgaatattt gacacggtct ttgttcatca cgaaattttt gacaaagacc
    33481 ttcggatgaa gattactagc tacagattta gtccgatggg tcgtaaatta aaatctattg
    33541 gttttgggaa aattaaaact agcctcactc aacaagtgtc aaatatcgct actgaagttg
    33601 tagaacagtc ggtatctgta gcaggacaag ttttcgaaga aaaactacaa aaagggatcg
    33661 aaaatgccga taaagttatc gatggcaaga ttaataaggt tagagatgaa atcaacgacg
    33721 gcatcgagca gtcaagggcg gaggctgaga ggcatgcaga caatatcaag agaagtattg
    33781 atactgaaat cactcaagtc aaccaatcca tgcaagcaca atctgaggaa cgcgacagac
    33841 aggttgcgga tatattgtcc aaaacccagt ctgtagaatc gcttgccaac caagccaagt
    33901 cggatgcggc tagtgcattg gctagagcta accaggtcaa gaccgaagct atcgcagatg
    33961 caagagcgca ggttgcgacc gttaatcaag cgttaaatac tgctaagact gagctacaat
    34021 c
//
LOCUS       DASFRC010000005        30445 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.005, whole genome shotgun sequence.
ACCESSION   DASFRC010000005 DASFRC010000000
VERSION     DASFRC010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 30445)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30445)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30445
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.005"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(86..946)
                     /locus_tag="U1087_000170"
     CDS             complement(86..946)
                     /locus_tag="U1087_000170"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEM4754698.1"
                     /translation="MKIIIPATSANIGPGFDSVGVALSKYLTIEVFEETDEWVIEHNL
                     EHVPSDKNNLLIKTALKIEKGLQPHRIRMISDIPLARGLGSSSSVIVAGIELANQLAG
                     LNMTADEKLLKATEIEGHPDNVAPAIFGNLVISSYVNKRVQAVVTEFPEASFVAFIPN
                     YPLRTVESRGVLPSQMGYKKAVAASAIANVAVASLMAGDLEKAGKAIQSDMFHEPFRQ
                     LLVKEFCPIKQTAQELGAYATYLSGAGPTVMVLAPKDREDAIVLALEELNLDGTVHRL
                     QVDTKGIAIV"
     gene            complement(950..2236)
                     /locus_tag="U1087_000171"
     CDS             complement(950..2236)
                     /locus_tag="U1087_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019782768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HEM4754699.1"
                     /translation="MVVKIGLLGFGTVASGVPFLLEENQEKIEKAAHDSIEVAKVLVK
                     DEAEKDRLLAAGHDYHFVTNIDDILADEDIAIVVELMGRIEPAKTFITRALEAGKHIV
                     TANKDLLAVHGSELRALAEEKGLALYYEAAVAGGIPILRTLVNSLAADKVTRILGVLN
                     GTSNFMLTKMVDEGWTYEKALQTAQELGYAESDPTNDVEGIDAAYKAVILSQFAFGMT
                     VDFEHVAHKGISNITPEDVAVAQELGYVIKLVGDIQESTSGIAAEVSPTFLPKNHPLA
                     SVNGVMNAVFVESIGIGQSMYYGPGAGQKPTATSVMADIIRIVRRLKDNTIGKAFNEY
                     SRPLQLAAPSDVKSEYYFSIDAPDKNGKMLRLAEIFNSEEISFKQILQQAADGETARL
                     VIVTHEMSKTQLENVTDKLSKETDFTVLNTFKVLGE"
     gene            2341..3264
                     /locus_tag="U1087_000172"
     CDS             2341..3264
                     /locus_tag="U1087_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEM4754700.1"
                     /translation="MKHSRRARRSRTQKKQLVPMLLGIALLVVTLLSIFLIFLKQPSK
                     QQSDSKASTVVTTTRSSVMTSESSEVQTEIIWEQQTEPIKLPILMYHAIHVMAPEEEA
                     NANLIVDPTTFESHLKALQDAGYYTLSPEEAYKVLTENVLPAGKKVVWLTFDDSLWDF
                     YSYAYPLLKQYQMKATNNVITGFTEYGQAGHLTLDQIREMQTAGLSFQGHTVNHPDLE
                     YSSIEDQTNELTSSKTYLDSQLNQETIAIAYPGGRYSADTVALTEQAGYKLGVTTNNG
                     LASASDGLLTLNRVRILPTTTAEGLLSEISY"
     gene            complement(3321..5090)
                     /locus_tag="U1087_000173"
     CDS             complement(3321..5090)
                     /locus_tag="U1087_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4754701.1"
                     /translation="MKNRSVFTRVWDYLRRYQSSVFLAVFLKTISAVMNALEPFVLGL
                     IITELTKNLLDIANGVEGAQINYSYIAIMLAIYALRALLYEIGAYGSNYFMTKAVQGA
                     TKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
                     LAIFMCFWLDVSLALVVITLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLT
                     GFNVLKLYGREEISTEEFRQITADLQEVGFKASFMSGLLMPLVHGFSNIAYVVVALLS
                     GLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSSLERIFSVLDELDEE
                     DANALELTESLTGQVSFEQVEFGYSEDKPLIRNFNLDVQPGEMVAIVGPTGAGKTTLI
                     NLLMRFYDVTSGAIKVDGQDIRNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDA
                     TDEEIVEVAKAANVDHFIRTLPGGYNMEMNQESSNISQGQKQLLTIARALLADPAILI
                     LDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQIIEQGN
                     HESLLADKGFYYNLYQSQFSESK"
     gene            complement(5099..6835)
                     /locus_tag="U1087_000174"
     CDS             complement(5099..6835)
                     /locus_tag="U1087_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002286381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4754702.1"
                     /translation="MNLIWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGI
                     TKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKLTTNIVKDIRNDLYEKIQDYSHH
                     EYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
                     VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERF
                     ESVNEEYTDISKKLFNLTGLTEPLFVQIIIAMIVAIVWFALDPLKTGSLQIGDLVAFI
                     EYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNEDGITETDTRGYLEF
                     ENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRIL
                     VDGVDVRRYNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAK
                     EFIESKEEKFDTHLAEGGSNLSGGQKQRLSIARAIVKQPDIYIFDDSFSALDYKTDAI
                     LRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNEIYREIA
                     NSQLNRQSLTEE"
     gene            complement(6911..7153)
                     /locus_tag="U1087_000175"
     CDS             complement(6911..7153)
                     /locus_tag="U1087_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000379626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HEM4754703.1"
                     /translation="MDMIENLIIAIVKPLISQPDSLTIKIVDTPEFLEYHLDLDQSDI
                     GRIIGRKGRTISAIRTIVYSVPTSDKKVRLVIDEKE"
     gene            complement(7175..7447)
                     /gene="rpsP"
                     /locus_tag="U1087_000176"
     CDS             complement(7175..7447)
                     /gene="rpsP"
                     /locus_tag="U1087_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002884675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HEM4754704.1"
                     /translation="MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLL
                     AENSVTLKEERVLEWLAKGAQPSDTVRSLLSNAGVLKKFHEQKFSK"
     gene            complement(7572..7880)
                     /locus_tag="U1087_000177"
     CDS             complement(7572..7880)
                     /locus_tag="U1087_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4298 domain-containing protein"
                     /protein_id="HEM4754705.1"
                     /translation="MKNIMEARKRVVEMEKIFNRQLELNQSLSDSLSQLSQEQSTYLQ
                     LLDYYQSQTYMEDLDLSNKGHFNGIPCGVLSEDGVYNLLFDRTNLASQLRELADMLEQ
                     "
     gene            complement(7880..8527)
                     /gene="pcp"
                     /locus_tag="U1087_000178"
     CDS             complement(7880..8527)
                     /gene="pcp"
                     /locus_tag="U1087_000178"
                     /EC_number="3.4.19.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016398107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyroglutamyl-peptidase I"
                     /protein_id="HEM4754706.1"
                     /translation="MKIIVTGFDPFGGEPINPALETIKSLPKTIAGAEIILVEIPTVF
                     DKAADVLEEKMAEHLPDAVLCIGQAGGRVDLTPERIAINQDDARIPDNEGQQPIDRTI
                     REDGQPAYFSTLPIKAMVEAIHRIGLPASVSNTAGTFVCNHLMYQALYLAEKQFPKTK
                     AGFLHIPFLPEQVVDKPGLASMSLNDIVRGVEVAIGAIVEYRDKEDIKKGGGSTH"
     gene            complement(8524..9279)
                     /locus_tag="U1087_000179"
     CDS             complement(8524..9279)
                     /locus_tag="U1087_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM4754707.1"
                     /translation="MIVTTSLGMDEGLVYRARLIASELGIEYKERKKQSVGKMLGTYE
                     AVLVLYKDKLILEQRGGQVLFFHPDTAMLRIKSGRDPLLELLGKEKQSIIDCTMGLGS
                     DSIVLASAGHRVTALESSKLVHFIVSRGLQDFDSGLQEVNRAMKSIQTIWTDSLTYLK
                     GQKDKSVDVIYFDPMFSEEIKESQNLSGLSILADRSRLTEEIVSEAKRVARKKLIIKA
                     HFRDQVFEEFGFKRHVRPNQKFHYGEIILEEEV"
     gene            complement(9343..12522)
                     /gene="carB"
                     /locus_tag="U1087_000180"
     CDS             complement(9343..12522)
                     /gene="carB"
                     /locus_tag="U1087_000180"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019803305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HEM4754708.1"
                     /translation="MPKRTDIKKIMVIGSGPIIIGQAAEFDYAGTQACLALKEEGYSV
                     VLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTLGGQTGLNMAMEL
                     SKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESTIVTTVDEALEFAA
                     EIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSIAGFKEIEY
                     EVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLSIIRALK
                     IEGGCNVQLALDPHSFKYYVIEVNPRVSRSSALASKATGYPIAKLAAKIAVGLTLDEM
                     VNPVTGTTYAMFEPALDYVVAKIPRFPFDKFEKGERRLGTQMKATGEVMAIGRNIEES
                     LLKACRSLEIGVYHNEMPELSQATDDQLVEKIVKAQDDRLFYLSEALRRGYTVEELAQ
                     LTKIDFFFLDKLLHILEIEQELATNFDNIDLLKTAKKYGFADCKIAELWGRTESYIRQ
                     LRTEHKIVPVYKMVDTCAAEFESATPYFYSTYEWENESIRSEKESVLVLGSGPIRIGQ
                     GVEFDYATVHSVKAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVLNVIDL
                     EEPKGVIVQFGGQTAINLAEPLAKAGIPILGTQVADLDRAEDRDLFEKALKDLGIPQP
                     PGQTATNEEEALEAARKIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPEH
                     PILVDSYIVGRECEVDAISDGKDVLIPGIMEHIERAGVHSGDSMAVYPPQTLSKEVQA
                     IIADYTKRLAIGLNCIGMMNIQFVIKDETVYVIEVNPRASRTVPFLSKVTDIPMAQVA
                     TKLILGQSLAELGYQDGLYPESNQVHVKAPVFSFTKLAKVDSLLGPEMKSTGEIMGSD
                     VTLEKALYKAFEASYQHLAEFGNVVFTIADEDKEEVLGLAQRFYELGYGLLATAGTAA
                     FLTENGLAATTVGKLGDDSCPDIPSLVRAGKVQAIINTVGKKRVADGDGQVIRSSAIE
                     GGIPLFTALDTAEAMVKVLESRSFMTQAI"
     gene            complement(13031..14110)
                     /gene="carA"
                     /locus_tag="U1087_000181"
     CDS             complement(13031..14110)
                     /gene="carA"
                     /locus_tag="U1087_000181"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HEM4754709.1"
                     /translation="MSKRRLILEDGTIFEGEAFGADIDVTGELVFSTGMTGYQESITD
                     QSYNGQILTFTYPLVGNYGINRDDYESIKPTCKGVVVSEWARRASNWRNQMTLDEFLK
                     AKKIPAISGIDTRALTKIIRQHGTMKATLANVGDSVEHLTDQLRATVLPTNNIQQVST
                     KTAYPAPGVGRSVVLVDFGLKHSILRELAKRDCNVTVVPYDTTAEEILALHPDGVMLS
                     NGPGNPDDVPEALEMIRGILGKIPIFGICMGHQLFAKANGAMTYKMKFGHRGFNHAVR
                     EIATGRVDFTSQNHGYAVAREDLPECLMITHEEINDKSVEGVRHKYYPGFSVQFHPDA
                     APGPHDASYLFDEFMELMDSFKKGQ"
     gene            complement(14358..15281)
                     /locus_tag="U1087_000182"
     CDS             complement(14358..15281)
                     /locus_tag="U1087_000182"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002889464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HEM4754710.1"
                     /translation="MTITNGKVSLKHLVTMETLSNEEVLGLIQRGIAFKRGEKVELDR
                     KYYASNLFFEDSTRTHKSFEMAELRLDMGMIDFDARTSSVNKGETLYDTILTMSALGV
                     DICVIRHSEVDYYKQLIDSPTIQTSIVNGGDGSGQHPSQSLLDLMTIYEEFGTFEGLK
                     IAIAGDITHSRVAKSNMQILKRLGAEIFFAGPEEWYAEEFDVYGQHLNIDDIVETVDV
                     LMLLRVQHERHDGDGGFSKETYNRLHGLTEERYKRLKDTAIVMHPAPVNRDVEIDDSL
                     VEAPKSRIVRQMQNGVFVRMAILEAIVNGKA"
     gene            complement(15338..15859)
                     /gene="pyrR"
                     /locus_tag="U1087_000183"
     CDS             complement(15338..15859)
                     /gene="pyrR"
                     /locus_tag="U1087_000183"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HEM4754711.1"
                     /translation="MKTKEIVDDMTMKRAITRITYEIIERNKNLDNIVLAGIKTRGVF
                     IAKRIQERLKQLEGIDVPLGELDTKPFRDDVKVEEDTTSMTADVNDRDVILVDDVLYT
                     GRTIRAAIDNIVSLGRPARVSLAVLVDRGHRELPIRADYVGKNIPTSRSEEIIVHMAE
                     IDGQDSVLLVEGA"
     gene            complement(16058..16705)
                     /locus_tag="U1087_000184"
     CDS             complement(16058..16705)
                     /locus_tag="U1087_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Pr6Pr family membrane protein"
                     /protein_id="HEM4754712.1"
                     /translation="MKNQSFLFYSRCLLAALAITGTALEIIKYGIGMLMYYTVQSNLL
                     VSLFAVYMVYAMSKSVDLQTSRFLRIKAAVTMSIMITCVVYHFMLAPLADDFWRLENL
                     LCHYIVPLYFLLDTLIVDRQQQYKWFDPIWWTLLPVLYMIFGLVNGLFIKIPIPDAKD
                     SPFAYFFLNVPKYGWTYVLTYAGVIFVAYLVCGFLLAGLKSINLKTSLSFGKNSQ"
     gene            complement(16753..17091)
                     /locus_tag="U1087_000185"
     CDS             complement(16753..17091)
                     /locus_tag="U1087_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002920966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HEM4754713.1"
                     /translation="METLPNCPKCNSEYVYEDGALLVCPECAYEWNPADVAEEESGPV
                     AIDANGNRLADGDTVTLIKDLKVKGAPKDLKQGTRVKGIRIVEGDHNIDCKIDGFGAM
                     KLKSEFVKKI"
     gene            complement(17172..18065)
                     /locus_tag="U1087_000186"
     CDS             complement(17172..18065)
                     /locus_tag="U1087_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEM4754714.1"
                     /translation="MEVRVEIGGIRLDKALSDLTDLSRSVANEQIKAGQVLVNGQPKK
                     AKYSVQVGDVLTYQIPEVEEIDYVAEDIPLEIVFQDEDVAVVNKPQGMVVHPSAGHTS
                     GTLVNALLYHVKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAHTKLAAELKDKKS
                     LRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTAKGKEAVTRFQVLERFGDYTLV
                     ELTLETGRTHQIRVHMAYIGHPVAGDEAYGPRKTLKGHGQFLHARTLGFTHPRTGEVV
                     EFTAEAPAIFQEALEKLRKAE"
     gene            complement(18049..18513)
                     /locus_tag="U1087_000187"
     CDS             complement(18049..18513)
                     /locus_tag="U1087_000187"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001226252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HEM4754715.1"
                     /translation="MRKIGFPFLMVELIGLDQFVKAWTVANIELDTVTEFIPGLMSLA
                     YLRNYGAAWSILQNQQWFFTIMTIVAVTGLVWYYIKQIKGNIWTLFSLSLMIAGALGN
                     FIDRLRLGYVVDMFHLDFISFPVFNVADMCLNVGVGILFICIMKEESNGSKS"
     gene            complement(18506..19420)
                     /locus_tag="U1087_000188"
     CDS             complement(18506..19420)
                     /locus_tag="U1087_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM4754716.1"
                     /translation="MNIQQLRYVVAIANSGTFREAAEKMYVSQPSLSISIRDLEKELG
                     FQIFSRTSSGTFLTQKGMEFYEKAQALVKGFDQFEHLYLQPEEGEKTFSISSQHYDFL
                     PPLITEFSRSHPQYPHFRIFESTTVQILDEVAQGYSELGIIYLNERNTKGIMQKLDKL
                     HLQAVDLSAFQTHIYLREDHPLTKKAEIDPVDLVGLPTVRFTQEKEAYLYYSENLIDT
                     SDSSVVFDVTDRATLNGILERTDAYATGSGYLDDESVNGITVIPLKGKVDNRMVYVKR
                     ANDELSSCAKDFIETMQAYFDKKKDENA"
     gene            complement(19503..19643)
                     /locus_tag="U1087_000189"
     CDS             complement(19503..19643)
                     /locus_tag="U1087_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014635961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM4754717.1"
                     /translation="MGPNLAKLVIDDLANRNSKAFQIAVEEEKLGTWKLYKKLVLKNR
                     TG"
     gene            complement(19853..20146)
                     /gene="rpmA"
                     /locus_tag="U1087_000190"
     CDS             complement(19853..20146)
                     /gene="rpmA"
                     /locus_tag="U1087_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018376869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HEM4754718.1"
                     /translation="MLNLNLANLQFMAHKKGGGSTSNGRDSQAKRLGAKAADGQTVLG
                     GSILYRQRGTKIYPGANVGRGGDDTLYAKVEGVVRFERKGRDKKQVSVYPIAK"
     gene            complement(20192..20506)
                     /gene="rplU"
                     /locus_tag="U1087_000191"
     CDS             complement(20192..20506)
                     /gene="rplU"
                     /locus_tag="U1087_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018374562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HEM4754719.1"
                     /translation="MSTYAIIKTGGKQVKVEVGQAIYVEKLNVEAGQEVTFEEVVLVG
                     GEKTVVGTPLVAGATVVGTVEKQGKQKKVVTFKYKPKKGSHRKQGHRQPYTKVVINAI
                     NA"
     misc_feature    complement(20542..20612)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00559"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ribosomal protein L21 leader region; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00559"
     gene            complement(20678..22003)
                     /gene="brnQ"
                     /locus_tag="U1087_000192"
     CDS             complement(20678..22003)
                     /gene="brnQ"
                     /locus_tag="U1087_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transport system II
                     carrier protein"
                     /protein_id="HEM4754720.1"
                     /translation="MKKGALTGLLLFGMFFGAGNLIFPPALGVLSGENFWPAILGFVV
                     SGVGIAVVALIVGTLNPKGYVHEISRKISPTFATIYLVALYLAIGPFFAIPRTATTSF
                     EIGIAPLLSEANLGIWLFGFTALYFVAAYLIALNPSQILNSIGRILTPVFAILIVILV
                     MLGIVKYGSTSPLPASEAYSAGQAFGTGFIEGYNTLDALAAVAFSVVAVNTLKQLGFS
                     NKKEYVSTIWSVGFVVALAFSALYVGLAFLGNHFPVPADVLASDTNKGVYILSQATQA
                     IFGPGAQIFLAAMVIVTCFTTTAGLIVSSGEFFAERFPRFSYKVYATIFTLIGFGIAN
                     LGLNNIITFSVPVLLVLYPITICIVLITIVNKFVPLSTYGMQLTVGVVTALSLVEVLA
                     GQFNWTAISKIISALPLAGQSLAWLLPALVGIVLSLFLPNKQESEVFEM"
     gene            complement(22125..23342)
                     /gene="thiI"
                     /locus_tag="U1087_000193"
     CDS             complement(22125..23342)
                     /gene="thiI"
                     /locus_tag="U1087_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 4-thiouridine(8) synthase ThiI"
                     /protein_id="HEM4754721.1"
                     /translation="MNYSEIMIRYGELSTKGKNKMRFVNKLRNNIKHVLSVYPEVTVY
                     FDRDRGHVYLNGADYQDVSASLKKIFGIQNFAPSYKIEKSVPALKEAVVEIMQSIYKE
                     GMTFKIAARRSDHNFELDSRDLNQVLGDAVFTAIPNVQVQMKSPDITLRVEIRPDAAY
                     ISHEEIKGAGGLPVGTSGKGTLMLSGGIDSPVAGYLALKRGVEIEALHFASPPYTSPG
                     ALKKAHDLTRKLTAFGGNITFIEVPFTEIQEEIKEKAPEAYLMTLTRRFMMRITDRVR
                     EERGAMVIINGESLGQVASQTLESMQAINAVTNTPVIRPVVTMDKLEIIDIAQEIDTF
                     DISIQPFEDCCTIFAPDRPKTNPKIKNVEQYEARMDVEGLVERAVAGIIVTEITPKEE
                     VKDEVDSLIEDLL"
     gene            complement(23344..24486)
                     /locus_tag="U1087_000194"
     CDS             complement(23344..24486)
                     /locus_tag="U1087_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008533866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEM4754722.1"
                     /translation="MIYFDNAATTQVYPEVLKTYTEVATKIWGNPSSLHSLGSQATRI
                     LEASRKQIAELLGKDSKEIFFTSGGTEGDNWVIKGVAFEKAHLGKHIIVSAIEHPAVK
                     ESALWLKTQGFEVDLAPVNAQGFVDVSALESLIRPDTILVSIMAVNNEIGAIQPIQEI
                     SQLLADKPTISFHVDAVQAIGKVPTERYLTDRVDFASFSGHKFHSVRGVGFVYVKAGK
                     KIAPLLTGGGQESDKRSTTENVAGIAATAKALRLTLDKATDSQKRLVAMKQILVDELG
                     KYDDVTVFSGLEDFVHSIVTFGIKNIRGEVIVHAFEDHQIYISTTSACSSKAGKPAGT
                     LIAMGVPQKLAQTAVRISLDDDNDMGQIEQFLTIFKQIYQNTQKVR"
     gene            24600..25013
                     /locus_tag="U1087_000195"
     CDS             24600..25013
                     /locus_tag="U1087_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754723.1"
                     /translation="MRSTKRKEHVSALTKLQKFLTFIGSILGIITACITIYTFTAKST
                     VAHTNPSSSISSSSSTNTKTSSAVSPTINIQASTSSSTETTAPSQTETSSTVDYSSSS
                     TTTETSSSQEIQTSITETTSSTENSTEASTSSSQE"
     gene            25073..25456
                     /locus_tag="U1087_000196"
     CDS             25073..25456
                     /locus_tag="U1087_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754724.1"
                     /translation="MKYFILRIPILVWLLLFSFIEIFLLASFLPEPFNTNSLLPIVIL
                     SSCAVRVSNEVKERDGQYTPFKQLWWAVLAWIILGILFGLTVQAPLSKHLVFIIKAIL
                     GGIGYRLIERYTVYRYHYLQTKKKG"
     gene            complement(25476..26504)
                     /locus_tag="U1087_000197"
     CDS             complement(25476..26504)
                     /locus_tag="U1087_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016503195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid lyase"
                     /protein_id="HEM4754725.1"
                     /translation="MLHFENDYNKGAHPVLLEALVASNQEGLSGYGTDKYTESAIEKI
                     RLATDCPHAQVTFLAGGTQTNQIVISSMLASYEGVIAADTGHISTHEAGAIEFSGHKV
                     LTLPHHEGKITASGVDNFIKDFYADANHAHMVHPGMVYISHPTEYGTLYSKTELEALS
                     TVCRYHNIPLFLDGARLGYGLAARETDLDLKTIAELTDVFYIGGTKLGALMGEALVFT
                     KNNQPKNFVSIVKHHGALLAKGRVTGVQFDCLFTDDLYLELGRHAIAMAEQLIQILEE
                     KGFQFYLKSPTNQQFVIVKNEELARLTEAGIAYGFWEKYDDSHSIIRFATSWSTSQED
                     IDELRKIL"
     gene            complement(26565..26636)
                     /locus_tag="U1087_000198"
     tRNA            complement(26565..26636)
                     /locus_tag="U1087_000198"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(26601..26603),aa:Arg,seq:ccg)
     gene            complement(26674..27879)
                     /gene="rpsA"
                     /locus_tag="U1087_000199"
     CDS             complement(26674..27879)
                     /gene="rpsA"
                     /locus_tag="U1087_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002897515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HEM4754726.1"
                     /translation="MNEFEDLLNSVSEVTPGDVVTAEVLTVDAGQANVAISGTGVEGV
                     LTLRELTNDRDADINDLVKVGETLELLVLRQVVGKDTDTVTYLVSKKRLEARKAWDKL
                     VGREEEVVTVKVTRAVKGGLAVEFEGLRGFIPASMIDSRFTRNTERFVGQEFDAKIKE
                     VDPAENRFILSRRDVVEAEAAAARAEVFGKLAVGEVVTGKVARITSFGAFIDLGGVDG
                     LVHLTELSHERNVSPKSAVTVGEEVEVKVLAIDEVEGRVSLSLKATQPGPWDGVEQKL
                     AAGDVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDALSVGQEVTVKVL
                     EVNAADERVSLSIKALEERPAAAEGEEKAEKRAPRPRRQKREEKRDYELPETQSGFSM
                     ADLFGDIEL"
     gene            complement(28003..28074)
                     /locus_tag="U1087_000200"
     tRNA            complement(28003..28074)
                     /locus_tag="U1087_000200"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(28040..28042),aa:Gln,seq:ttg)
     gene            complement(28213..28293)
                     /locus_tag="U1087_000201"
     tRNA            complement(28213..28293)
                     /locus_tag="U1087_000201"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(28257..28259),aa:Tyr,seq:gta)
     gene            complement(28345..28578)
                     /locus_tag="U1087_000202"
     CDS             complement(28345..28578)
                     /locus_tag="U1087_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2969 domain-containing protein"
                     /protein_id="HEM4754727.1"
                     /translation="MSKKDKKIEIQIEDSKVLVNREEFPGYRLVIGKKVIGEIAELAE
                     NNFAVIKNGNTESFYKKLEKAVENIIENYNLSH"
     gene            complement(28645..29667)
                     /locus_tag="U1087_000203"
     CDS             complement(28645..29667)
                     /locus_tag="U1087_000203"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009730267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="HEM4754728.1"
                     /translation="MTVNIDWENLGFSYMKLPYRFIAHFKNGQWSEGQLTEDAELHIS
                     ESSPALHYGQQAFEGLKAYRTKEGKLQLFRPDQNAERLQRTADRLLMEPVPTDLFIKA
                     CKEVVKANADYVPPYGTGGTLYLRPLLIGVGDIIGVKPAEEYIFTVFAMPVGNYFKGG
                     LAPTNFLIQDKYDRAAPNGTGAAKVGGNYAASLLPGQYAKKQGFSDVIYLDPATHTKI
                     EEVGSANFFGITANNEFVTPISPSILPSITKYSLLYLAEHRLGMKAVEREVLVEELDQ
                     FVEAGACGTAAVISPIGGIQIADKLHIFHSETEVGPVTRKLYEELTGIQFGDIEAPEG
                     WIVEVD"
     gene            complement(29778..30395)
                     /locus_tag="U1087_000204"
     CDS             complement(29778..30395)
                     /locus_tag="U1087_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HEM4754729.1"
                     /translation="MKIIKLFFSIKVYLWLVLSFLLLLCGVWGYGYISGEKSNQQEVS
                     VHTAIESVEQVNELVFLNTAVQKIVTAKNYTVLFGQEMPFSEKSALLIIKYKAKFGIK
                     SPVSIEHLSENRYKITLPAFEVIGLELDAEEPYTLYDKSGEILSFATEEIDTAQLITD
                     EFQSAEQETFLADYQEDIKESAKTYYQNLFSAISPEIQLEFVFKE"
BASE COUNT         9001 a         7071 c         5680 g         8693 t
ORIGIN      
        1 gttcccttcc taccgcatat agtagcgacg gcgaactcca ataaaataaa catgtttagt
       61 tttgcaaatg acagattctc actatctata caatagcaat ccctttggta tctacttgaa
      121 ggcggtggac agttccgtct agatttagtt cctctaatgc tagaacaata gcatcctccc
      181 tatctttggg cgctaatacc atcactgttg gaccggcacc tgataagtag gttgcatagg
      241 ctcccaactc ctgtgcagtt tgcttgattg gacaaaactc cttaacaagt agctgacgaa
      301 acggttcatg gaacatgtct gactgaattg ctttcccagc tttttccaga tcacctgcca
      361 tcaaactggc aacagcaacg tttgcaatgg cactagcagc cactgctttc ttgtacccca
      421 tctgagaagg cagtacacct cggctttcaa ccgtacgcag tgggtagttt ggaataaagg
      481 caacaaaact tgcttctggg aattctgtta caactgcctg tactctctta ttaacatagc
      541 tagagatgac taaattacca aaaatcgctg gggctacatt atcaggatgt ccttcaattt
      601 ctgtagcttt gagcaatttt tcatccgctg tcatattcaa acctgctaat tgattagcca
      661 attcgatacc agctacgata acggaactgg atgaacccaa accacgtgcc aagggaatat
      721 cactaatcat tctgatacga tgcggctgca atcctttttc aatctttaaa gctgtcttga
      781 tcaaaagatt gttcttgtct gatggaacat gttcaagatt gtgctcaatc acccattcat
      841 cagtctcttc aaatacttca atcgttagat atttcgaaag ggcaacacct actgaatcaa
      901 atcctggacc gatattagct gaagttgctg gaataataat tttcattgct tattctccca
      961 gtactttaaa ggtatttaag acagtaaagt ctgtttcttt actcaatttg tctgttacat
     1021 tttccaactg agtcttactc atttcatggg tcacaatcac taggcgagct gtttctccat
     1081 ctgcagcttg ttgcagaatt tgcttgaagg aaatttcttc agaattgaag atttctgcta
     1141 aacgaagcat ttttccattt ttatcaggcg catcaattga gaaataatat tcgcttttca
     1201 catcgcttgg ggctgccaat tgaagtgggc ggctatattc gttaaaagct ttgccgatag
     1261 tattgtcttt caagcgacga acgatacgaa taatgtcagc cataacactt gttgcagtcg
     1321 gtttttgccc agcgcctggt ccatagtaca tagactggcc gatgccgata gattcgacaa
     1381 atacagcatt catcacaccg ttcacgcttg caagtggatg atttttcggt aggaaggttg
     1441 gagatacttc ggcagcaata ccagaggtac tttcttgaat atcacccaca agtttgatga
     1501 catagcccaa ttcttgtgcc actgctacat cttctggcgt gatatttgag atacccttgt
     1561 gtgctacgtg ttcaaaatca actgtcatcc cgaaagcaaa ttgactgagg ataacagcct
     1621 tgtaagccgc atcaatcccc tcaacgtcat ttgttgggtc agattctgca tagccaagtt
     1681 cctgtgctgt ttgaagtgct ttttcgtaag tccagccttc atcaaccatc ttagtcaaca
     1741 tgaagtttga agtaccattc aatacaccga ggatacgagt caccttatca gcagccaaag
     1801 agttgaccaa ggtacgcaag attggaatac cacctgcaac tgcagcttca taataaagcg
     1861 caagaccttt ctcttcagcc agggcacgca attcgctacc atgaacagca agtaaatcct
     1921 tattggctgt tacaatatgc ttgccagctt ccaaggcacg tgtaataaat gtttttgctg
     1981 gctcaatacg tcccatcagc tcaacgacga tggcaatgtc ctcatcagcc aaaatgtcat
     2041 caatatttgt cacaaaatga tagtcatgac ctgcagccaa gagacggtct ttttctgctt
     2101 catccttgac caaaacctta gcaacttcaa tactatcatg cgcggctttc tctatttttt
     2161 cctggttttc ttctaataaa aatggcacac cactcgcaac ggttccaaat cctaataatc
     2221 ctatcttaac taccatgtgc tctcctttaa aatgtatttc tcccattata acaaatattc
     2281 tgactatttg gcaaaaaatt tgatataatt gttttaatat atgattatgg agataagata
     2341 atgaaacatt caagaagagc ccgtcgaagc cgcacacaaa agaaacaact tgtgccaatg
     2401 ctacttggca tcgcattatt agtagtgact ctactatcta tttttctaat ctttctaaaa
     2461 cagccatcta agcaacaaag tgattccaaa gcttcaacgg tagtgacaac aacccgttcg
     2521 agtgttatga cttcagaaag tagtgaagta caaacagaaa tcatttggga acaacaaact
     2581 gaacctatca aacttccaat cctcatgtat catgccattc acgtaatggc tcctgaggaa
     2641 gaagctaatg cgaatcttat cgtagatcca acaactttcg aaagtcatct aaaagcattg
     2701 caagatgcag gttactatac tttatcacct gaagaggctt ataaggtatt gacagaaaat
     2761 gtccttcctg ctggcaaaaa ggttgtctgg ctaacctttg acgatagcct ctgggatttt
     2821 tatagttatg cctatccatt gcttaagcaa tatcaaatga aggcaaccaa caatgtcatt
     2881 acagggttta ctgaatatgg acaagcaggg caccttactc ttgatcaaat cagggaaatg
     2941 cagactgcag gcctctcctt ccaagggcat accgtcaacc atcctgattt agagtatagt
     3001 tctatcgagg atcaaacaaa tgaacttact tcctctaaaa cctatcttga cagccaatta
     3061 aatcaggaaa ccatcgctat cgcctaccct ggtggacgat actcagcaga tacagtagcc
     3121 ttaactgaac aagctggcta caaacttggt gtgactacta acaacggctt agcttctgct
     3181 agtgacggat tactgactct caatcgtgtc cgcatcctcc caaccactac cgctgaggga
     3241 ctattatccg aaatttccta ttaattttca caaacatgta tatgagaaaa ctccctgtca
     3301 ctgacaaggg agttcgtttt ttatttggac tcactaaact ggctttgata aagattataa
     3361 tagaaacctt tgtctgccaa aagactttca tggttacctt gttcgataat ctgtccatct
     3421 ttcaagacca aaatcttatc agcttcctga atggtagata agcgatgagc gatgacgaaa
     3481 cttgtccgcc ctttcatcaa ccgtttcatg gctttttgaa tcaagagttc caaacgggta
     3541 tcaactgaag aagtcgcttc gtcaagaatc agaatagcag gatccgccaa caaggcacgc
     3601 gcaatggtca aaagctgttt ctgaccttgg gaaatattgc tggattcctg gttcatttcc
     3661 atattataac caccaggcag ggtacggata aagtggtcaa cgttggcagc tttagcaacc
     3721 tccacaattt cctcatccgt cgcatccaga cgtccaaaac gcaggttttc cttgatggtc
     3781 ccttcataga gccaagcatc ctgcaagacc atgccaaatt gactacggta ggattgacga
     3841 gaaagatttc gaatatcctg cccatctacc ttgatagcac ctgatgtgac atcatagaaa
     3901 cgcatgagaa ggttgatgag ggtagtctta cctgcccctg ttggaccaac gatggccacc
     3961 atctcaccgg gttgaacatc cagattaaag ttacggatga gcggcttatc ttctgaatag
     4021 ccaaattcga cctgctcaaa gctgacttgt ccggtcagac tttctgtcaa ctctagtgca
     4081 ttggcgtctt cttcgtcaag ctcatctaag actgaaaaga tgcgttcaag ggaagatttg
     4141 gcagactgca actgtggtgc caattgggtc aaggtttgga ctggctgaga aatctgccag
     4201 acgtattgga cgaaggcctg catattaccc accgtcaatg tacctgcaag aactttcaat
     4261 ccagatagca gggcgacgac aacgtaggcg atgtttgaga agccgtgaac tagaggcatg
     4321 agcaaaccag acatgaaact agccttgaaa ccaacttcct gcaaatctgc ggtaatctgg
     4381 cgaaactctt ctgtagaaat ttcttcacgg ccgtagagtt tgagaacgtt aaaaccagtc
     4441 agattttctt ggacaaagcc gttcaaacga cctagggcat cagcctgctg cttgaaatat
     4501 ggctgggatt tgcccatgac aaacttagaa ccaaaatagg tcactggaac caaggttatg
     4561 actacaagtg ctagggatac atccaaccag aaacacatga aaatggctag agagagggtc
     4621 agaacggcat tgactagctg gagaaaactt tgttgcaggg cgtttgaaac agtctccaca
     4681 tcgcttgtaa aacgtccaag taaatcacca tactggtgct tgtcaaaata agatactgga
     4741 atcttgttaa ttttgtggct caaatcctga cgtagttcct tagttgctcc ctgcactgcc
     4801 ttggtcataa aatagttaga accgtaggca ccgatttcat atagaagggc gcgaagggca
     4861 tagatggcaa gcatgatggc aatgtaggaa tagttaatct gcgctccttc tactccatta
     4921 gcaatatcca acaaattctt ggtcaattct gtaatgataa gccccagcac aaagggttct
     4981 aaggcattca taactgcact gatggtcttt agaaaaacgg ctaaaaatac agaagattgg
     5041 taacgacgca aatagtccca aacacgggta aatactgatc tattcttcat aattcctcct
     5101 attcttctgt taacgattga cggttaagtt gagagttggc aatttctcgg taaatctcat
     5161 tgctttccat caattcattg tgggtgccgc ggccaacgat ttcaccttcg ttcagcacga
     5221 taatctggtc agcatccata atggttccga cacgttgagc cacaattagc accgtcgcat
     5281 tttccgtcac ttccttcaaa cgactccgca aaattgcatc cgtcttataa tccaatgctg
     5341 agaaagaatc atcaaaaatg taaatatccg gctgcttcac aatagcacgt gcaatggaca
     5401 aacgttgctt ttgcccgcct gacaggttgc tgccgccctc agccaagtgg gtgtcgaatt
     5461 tttcttcctt actctcgata aactccttag cctgagccac atctgtcgca tcatgaagtt
     5521 ctgcaagact agcatccatc ttaccgtact ttaagttttc cgcgatagtt ccggtaaata
     5581 gcagagcttt ctgtggaata aagccaatct tgctgcggag tgcctttaga ttgtagcgtc
     5641 tgacatccac accgtccacc aagatacgac caagtgtcac atcatagaaa cgtggaatca
     5701 agttgaccaa ggaagactta ccagaacctg ttgaaccaat aaaggcaatc gtttcaccag
     5761 gcttagcttt gaaggaaata ttgtgcagca caggcgattc cgtttcacca gggtaggcaa
     5821 aagttacatt ttcaaattcc aaataaccac gagtatctgt ttcagttatg ccgtcttcat
     5881 tcttagaaat agaaatcggc atatctagca cttcttgaat tcgctgacta gacaccgaca
     5941 tacgtggata catgttaaac aagttagcaa agagcaagaa agagaaaagc gcgtggaaac
     6001 tatattcgat aaaggctacc aaatcaccga tttgcagact gcctgttttc aagggatcca
     6061 aagcaaacca gacaatggcc acaatcatag caatgataat ctggacaaag agaggctctg
     6121 tcaatccagt cagattaaag agctttttgg aaatatcggt atattcctca ttgaccgact
     6181 caaagcgctc ctcttgaaac tcctcacgag taaaggcacg aatgacacgt aagcccatga
     6241 gattttcacg aacatattgg ttgatcgtat ccaaacgttt ctgttgcttt tcagaaagag
     6301 gacgagtttt agtagctaca taaaaaatga cgaaaaccaa aaatggcata gctactgcta
     6361 ctgtccaggc taagctcgga ctggttacca aggtcatgat gacagaagca atcatcatca
     6421 agggtgtaat aatacctagt ttcaagacca tttcagagaa ttgcatgaga acaaaagcat
     6481 catttgtcat acgagcaact agagaagaaa caccaatctg ctcatattca tgatgagaat
     6541 agtcctgaat tttctcatac agatcatttc gaatatcttt gacgatgttg gtagtcaact
     6601 ttccagctgc ataggcaagt gtcactcgac caacaatccc gagcaggaca atcaatccca
     6661 tcatccccgc ccagaaatag agctgactaa catcgttctt tgtaattcct tggtcaatca
     6721 tcctagccaa aaaagtcggc aagcctaagt ttaccactac aaataagaag gcccccaaca
     6781 agtctaaggc aatccactta ggatattttt tcaaataggt ccaaatcaga ttcatcattt
     6841 cttcctttct atatgttaaa aaggggctag gcccctttgt caacgttaaa agccaccaaa
     6901 cggtgacttt ctattctttc tcgtcgatca ctaaacgaac ttttttatca cttgttggaa
     6961 cagaatagac aatcgttctg attgcagaaa ttgtgcgtcc ttttctacca atgatacgtc
     7021 caatatcaga ttgatccaaa tccaaatgat attccaagaa ttcaggtgta tcaacaattt
     7081 ttattgtcaa gctatcaggc tgtgaaatca aaggtttcac aatcgcaata atgagatttt
     7141 caatcatgtc cataagtgtt ctcgcttact gttcttactt agagaatttt tgttcgtgga
     7201 atttcttcaa tacgccagcg tttgaaagaa ggctacgaac tgtatcagat ggttgtgcac
     7261 cttttgccaa ccactcaagt acacgctctt ctttaagagt tactgagttt tcagccaaaa
     7321 gtgggttgta agtaccaaca gtttcgatga aacgaccatc acgtggtgca cgtgagtctg
     7381 caacgttgat acggtagaaa ggtttctttt tagaacccat acgagtcaaa cggattttta
     7441 ctgccatttt taaatgttct cttttctttg tatttttatt cggtgaaata gcagagctat
     7501 ttagcacatg ttctattata ccacacttta acagggtgtc aagaaaaaaa cttgacaggt
     7561 tttaaaaaaa tttattgttc gagcatatct gctagttctc tcagttgact tgctagattt
     7621 gtacggtcaa acagtaaatt atagactcca tcttcactca atactccgca aggaatacca
     7681 ttgaaatgcc ccttattaga taaatcaaga tcttccatat aggtctggct ctggtaataa
     7741 tctaataact gtaaataagt cgattgttcc tggctaagtt gtgacagact atcggaaagg
     7801 gactggttca gctctagctg tctgttaaat attttttcca tttccactac acgttttctt
     7861 gcttccataa tatttttcat cagtgtgtac tgccaccacc ctttttaata tcctctttat
     7921 ctctatattc aacaatcgct cctatagcta cttcaactcc tcttacaata tcgttcaaag
     7981 acatggaagc cagtcctggt ttgtcgacaa cctgctctgg caagaaggga atatggagaa
     8041 atcctgcctt agtctttgga aattgtttct ccgccaagta aagagcttga tacatgagat
     8101 ggttgcagac aaaggtccca gcagtattag aaacagaagc tggaagccca atcctatgaa
     8161 tcgcttcaac cattgctttg atgggtaagg tggagaaata agcaggctga ccatcttctc
     8221 gaatcgttct atcaatcggc tgttgccctt cattgtctgg aatacgtgca tcatcttggt
     8281 taatggctat acgctcagga gttaaatcaa ctcgaccacc agcctgacca atacatagta
     8341 ccgcatcagg taaatgttcc gccatttttt cctctaaaac atccgcagcc ttgtcaaaaa
     8401 cagtcggaat ctctacaaga ataatctctg caccagcaat ggtcttaggt agagatttga
     8461 ttgtttccaa ggctgggtta ataggctcgc caccaaaggg atcaaagcct gttacgatga
     8521 ttttcatact tcctcctcca aaataatttc tccgtagtga aatttttgat tgggtctgac
     8581 atgacgttta aagccaaatt cttcaaagac ctgatctcga aaatgagcct ttattatcaa
     8641 tttcttccta gctactcgtt tagcctcaga tacaatttcc tccgttaaac gacttctgtc
     8701 agccaaaata gacaagccag aaagattttg tgattccttg atttcttctg aaaacatggg
     8761 atcaaagtaa atgacatcaa cagacttatc tttttgccct ttcaaataag tcaaactatc
     8821 tgtccaaatt gtctggatag atttcatggc tcgattgacc tcttgcagcc cactatcaaa
     8881 atcctgtaaa cctcgactca caataaagtg cactagctta gaactttcca aggctgtcac
     8941 ccgatgaccg gcacttgcta acacaatgct atcagatccc aagcccatag tacagtctat
     9001 tattgattgt ttttcttttc caagtaattc caaaagcgga tctcttccag acttaatccg
     9061 caacatggca gtatctgggt ggaaaaataa aacctgccca cccctctgct ctagtatcaa
     9121 tttatcctta taaagaacca agacagcctc gtaggtacct aacatttttc caaccgactg
     9181 cttctttctt tccttgtatt caattcctag ttcactggca atcagtctag ccctatagac
     9241 cagcccctca tccatcccaa gactagttgt tacaatcatt ttcatactct tcagtatatc
     9301 aaaaaatcag gacgaactca aagctcatcc tgatagtatc ttctatatag cctgtgtcat
     9361 gaagctacgg ctctccagca ctttgaccat agcttctgct gtatcgaggg ctgtaaagag
     9421 cggaattcct ccttcaatag cagagcttcg aatcacttgt ccgtcgccat cggccacacg
     9481 ttttttccca accgtattga taatagcctg aaccttacct gcccgaacaa gactaggaat
     9541 atctggacag gaatcatcgc ctaatttacc aacagttgtt gcagcaagtc cattttctgt
     9601 tagaaaggcg gctgttcctg ccgtagccag taggccataa ccaagttcat agaaacgttg
     9661 agccagacca agcacttctt ccttgtcttc atccgcaatg gtaaagacaa cgttgccaaa
     9721 ctcagccagg tgctgataac ttgcctcaaa agccttataa agtgcttttt ccagtgtcac
     9781 gtctgaaccc ataatttcac cagtagattt catctcaggt cccagcaaac tatctacttt
     9841 tgctagtttc gtgaacgaga agaccggtgc cttgacgtgc acttggttgc tctcaggata
     9901 aagaccgtct tggtagccaa gttccgcaag gctttgtccc aaaatcaatt tggttgcaac
     9961 ctgagccatt ggaatgtctg tgactttgga caagaatggc accgtacgac tagcacgagg
    10021 attgacctca atcacataaa ccgtttcatc cttgatgaca aactggatat tcatcatacc
    10081 gatacagttg agaccgattg ccaagcgttt ggtgtagtct gcaatgatcg cctgcacttc
    10141 tttggataag gtttgtggcg gataaactgc catcgagtca cctgagtgaa ctccagcgcg
    10201 ctcgatatgc tccataatac ccggaatcaa gacatcctta ccatctgaaa tagcatccac
    10261 ttcacactca cgaccgacga tgtaagaatc caccaaaatt gggtgctctg gcgaagcctt
    10321 gaccgcagtt ctcatataag aacgtaagtc ctcttcattt tcgacaatct ccatagcacg
    10381 accgcccaag acatatgatg gacgaacaag taccgggaaa ccaattttgc gggccgcttc
    10441 aagagcttcc tcttcgttgg ttgcggtttg gcctggtggc tgtggaatcc ctaggtcttt
    10501 cagggctttt tcaaataaat ccctgtcttc agctctatcc aaatccgcca cctgtgtccc
    10561 caagattgga atgcctgctt tggccaatgg ctctgccaaa ttgatagccg tctggccacc
    10621 gaactgaacg ataacccctt tgggttcctc aaggtcgatc acattcaaaa catcttccaa
    10681 ggtcaacggc tcgaagtaaa gtttgtctga aaccgaaaag tcagttgaca cagtttcagg
    10741 gtttgagttc ataatgatgg cttcgtagcc agccgcctga atggccttga cagaatgcac
    10801 cgtcgcatag tcaaactcca caccctgacc gatacgaatt ggaccagaac ccagcaccaa
    10861 aacagattct ttctccgaac ggatggactc attttcccac tcataagttg aatagaaata
    10921 aggtgtagca ctttcaaact cagccgcaca agtgtccacc atcttgtaaa cagggacaat
    10981 tttgtgctct gtccgcagtt gacgaatgta ggattctgtc cgtccccaga gttccgcaat
    11041 cttgcagtct gcaaaaccgt atttcttggc tgttttcaat aaatcaatat tatcaaaatt
    11101 cgttgccaat tcctgctcga tttctaagat atgaagcagc ttgtcaagga agaaaaaatc
    11161 aatcttcgtc aactgagcca gttcttctac tgtataacca cgtcgaaggg cttctgaaag
    11221 atagaataaa cgatcatcct gtgccttgac aatcttttca actaattggt catctgttgc
    11281 ttggctgagt tctggcattt cattgtgata aacaccgatt tctaaagaac ggcaggcctt
    11341 gagcagactt tcttcgatat tacgcccaat ggccatgacc tctccagttg ccttcatctg
    11401 cgttccaagg cgacgctccc ctttttcaaa cttatcaaat gggaaacgtg gaatttttgc
    11461 cacaacgtag tcaagagcag gctcaaacat ggcataggtt gttcctgtaa cagggttcac
    11521 catttcatcc aaggtcaagc caaccgcaat ttttgctgcc aatttggcaa taggataacc
    11581 tgtcgctttc gatgccaagg cagacgaacg ggacacacgt gggtttactt caatgacata
    11641 atatttgaaa ctatgtggat caagtgccaa ctgcacatta cacccacctt cgattttgag
    11701 agcacggatg atgctgagac tggcatcacg cagcatctgg ttttcaatat ccgaaagcgt
    11761 ctgcgttggg gcaaatacga tagaatctcc tgtatgaatt cccacagggt caaagttttc
    11821 catgttacat acgaccaagg cattgtcagc cgcatcgcgc atcacttcgt attcaatttc
    11881 tttgaaacca gcaatggaac gctcaatcaa acactgggtc accggtgaca atttcagacc
    11941 attttctgct atttcacgca gttcttcttc attggcacac ataccaccgc cagtaccacc
    12001 cagcgtgaag gctggacgaa caatgacagg atagccaatt tcagcagcaa attccaaagc
    12061 ctcatcaact gttgtcacaa tcgttgactc aggaataggc tgattgagat cttccatgag
    12121 ttgtttgaag aggtcgcggt cctctgcctg atcaattgca gacagtttag ttcccaacaa
    12181 ctcaactcca agctcatcta aaataccagc cttagacaat tccatggcca tgttgagacc
    12241 agtctgacca cccagggttg gcaagagagc atctggacgc tccttccgta aaatccgtgt
    12301 gacaaattca agcgtaattg gctcaatata aaccttgtct gcaatttcct tgtctgtcat
    12361 gatggtcgca gggtttgaat tgaccaagac aacactatag ccttcttcct tcaaagccaa
    12421 acaagcctga gtcccagcat aatcaaactc cgcagcctga ccgataataa tcggaccaga
    12481 cccaatcacc ataattttct taatatccgt acgttttggc ataatgtatg atacaaagcc
    12541 cgttaagagg acaaagcgaa aataggaaac acgacgctaa tgcttcaagc atcaagacga
    12601 tgtttatctt tttcgcacag tccttagggc gtgttcgaat aggaaactcg aacctgtatc
    12661 tctcctttct attttctatc tctccggata gaattaaata attgtccgac gtgagaaaat
    12721 ggattcgaca ttaatccatt ttcgagctag tgcaagggat agcctgacct ccatagaggc
    12781 aggcgtaggg aaatgagttg ctcgcaacca ttgatctatc ccttgccttt ctattcgtcg
    12841 cctctctgag caacattaaa taagataagt ccgacgttta gaatctcaat tcgataataa
    12901 ttgaaattct aaactagtgt cagagttagc aaaggtccca taggactttg cgtaggagga
    12961 cacatgcctt ccatgtagtc cgacttactc tgaccgacgc agttaggtat agctcgatat
    13021 tagttaaacc ttactgccct tttttaaacg aatccatcaa ttccataaat tcgtcaaaca
    13081 aatagctggc atcatgtgga ccaggtgcag catctgggtg gaattgaaca gagaaacctg
    13141 gatagtactt gtggcgtacc ccttctactg atttgtcatt gatttcttca tgagtaatca
    13201 ttaaacattc aggtaaatct tcacgagcca ctgcataacc gtggttctga ctggtaaagt
    13261 ccactcgacc tgtcgcaatt tcacgaacag catggttgaa accacggtga ccaaacttca
    13321 ttttataagt cattgcccca tttgctttag caaagagttg gtgccccata cagatgccaa
    13381 aaattggaat tttcccaaga atcccacgaa tcatttctag cgcttctgga acatcatctg
    13441 gatttcctgg gccgtttgat agcataacac catcaggatg gagagcaaga atttcttcag
    13501 cagtagtatc ataagggaca actgtcacat tgcaatcacg cttggctaac tctctaagaa
    13561 tagaatgttt caatccaaaa tcgaccaaaa caacactacg tccaactcca ggtgcaggat
    13621 aggctgtttt tgtcgatact tgctggatgt tgttggttgg caaaacagtc gctctcaatt
    13681 gatccgtcaa atgctcaaca gaatcaccga catttgccaa tgtcgccttc atggtcccgt
    13741 gctgacgaat aattttagtt agggcgcgtg tgtcaattcc agaaattgct ggaattttct
    13801 tagcctttaa aaattcatcc aaagtcatct ggttacgcca attacttgct cgacgagccc
    13861 actcgctaac aaccactccc ttacaagtcg gtttgatcga ctcgtaatca tcacggttaa
    13921 tcccgtaatt tcctaccaag ggatatgtaa aggttaaaat ctgaccatta taagactggt
    13981 ccgtgatgga ttcctgataa cctgtcatcc cagttgagaa aaccaactca ccagtcacat
    14041 caatatcagc accgaaggcc tccccttcaa aaatagtgcc atcttccaaa attaaacgtc
    14101 tttttgacat aatctatgat acaaagcccg ttaaaaggac aaagtgaaaa taggaaattc
    14161 ggcgccgacg ctataggcgt caagtcgata tttatctttt tcacacagtc cttagggcgt
    14221 gttcgaatat aaaaatcaaa tcttactcga acctgtacct tctcctttct attcgtcgcc
    14281 tctctgagcg acattaaata agataagtct aacaaatttc taactgctca gtactaaggt
    14341 acctgaacag cttactttta agccttgcca ttgacaattg cttccaaaat cgccatacgg
    14401 acaaatacac cattctgcat ttggcggaca atacgtgatt tgggtgcttc aactagagaa
    14461 tcatcaatct caacatcgcg attgacaggg gccggatgca taacaattgc agtatctttc
    14521 aagcgtttgt agcgctcctc tgttaaacca tgcaaacggt tataagtttc tttagaaaag
    14581 ccaccatcac catcatgacg ctcgtgttgc acacggagca acatcagtac atctaccgtt
    14641 tccacaatat catcaatatt caaatgctga ccatagacat caaattcctc tgcgtaccat
    14701 tcctccggtc cagcaaagaa aatctcagct cccagacgct tcaaaatttg catattggac
    14761 ttagcaaccc gtgagtgtgt aatatcacct gcaatggcaa tcttcaagcc ttcaaaagtt
    14821 ccaaattctt cataaatagt catcaaatca agtagggatt ggcttgggtg ttggcctgaa
    14881 ccatcaccac cattgacaat tgaagtctga atggtaggac tatcaatcaa ttgcttgtaa
    14941 taatccactt ccgagtgacg aatgacacag atatcgaccc ctaaagctga catggtcaaa
    15001 attgtatcat acaaggtttc acccttattg accgaactgg tacgagcatc aaagtcaatc
    15061 attcccatat ccaaacgaag ctccgccatt tcaaaagact tatgcgtccg agttgaatcc
    15121 tcaaagaaaa ggttagaagc atagtacttc cgatccaact ctaccttttc accgcgttta
    15181 aaagcaatac cacgttgaat gagtcccaat acttcttcat ttgagagggt ctccattgta
    15241 accaagtgtt tgagtgaaac tttaccattt gtaattgtca tgacgatacc tgcctttagg
    15301 atataaaatg tagaatattg aattgaaaaa taaacgacta agctccctcg actaggagga
    15361 cagaatcctg accatcgatt tcagccatgt gaacgatgat ttcttccgaa cggctagttg
    15421 ggatattctt cccaacataa tctgctcgaa taggcaactc cctgtgtcca cgatccacaa
    15481 gtaccgctaa actaacacga gctggacggc ccaaggacac tatgttgtca atagccgcac
    15541 gaatggttcg gcctgtatag agcacatcat ctaccaaaat aacatcacgg tcattcacat
    15601 cagcagtcat gcttgtcgta tcttcttcga cttttacatc atcacggaaa ggtttggtat
    15661 ccaattcacc cagtggaaca tcaataccct ctaattgctt cagtctttcc tgaatacgtt
    15721 tagcaatgaa caccccacgg gttttaatcc ctgcaaggac aatattatcc aaattcttat
    15781 tccgttcgat aatttcataa gtgatacggg tgattgcccg tttcatagtc atatcgtcaa
    15841 cgatttcttt tgtcttcata agacctccaa aagtatagaa aaagtctcct tatacaagga
    15901 gactatgaaa atataggcta gttagaacca acctgcttaa catccgactc cttgtctgcc
    15961 tctctggaca ggttttaaag gatttattaa gcagagtata gcataaaatc tcagccttga
    16021 caattttttt ctgaaaaaat atagaaatta tcggatttta ctgagaattt tttccaaaag
    16081 acaatgaagt cttaaggttt atggatttta gtcccgccaa tagaaaaccg cagactagat
    16141 aggcgacaaa gatgactcca gcataagtca aaacataggt ccaaccatac ttagggacat
    16201 taagaaagaa ataagcaaaa ggactgtcct tagcatctgg gattggaatt tttatgaaaa
    16261 gaccattcac tagaccaaaa atcatgtaga gaacaggcaa aagcgtccac caaatcgggt
    16321 caaaccactt gtactgttgc tgacgatcta ctattagggt atctaacaaa aaatataagg
    16381 gaacaatata atggcagagt agattttcaa gtcgccagaa atcgtctgcc aaaggcgcca
    16441 acataaagtg atagactaca caagtaatca tgatagacat ggttacagca gcctttatcc
    16501 gaagaaaacg tgacgtctgt aaatccacac ttttactcat ggcatagacc atatagacag
    16561 caaacagaga taccaataaa ttagattgta ccgtataata catgagcatc ccgataccgt
    16621 atttaatgat ttctagagca gttcccgtaa tcgctaaagc agccagtaaa catctgctat
    16681 aaaataaaaa actttgattc ttcatactat cctttcaaaa acaggaaaag actggttaac
    16741 cagtcctctc tcttagattt tcttaacaaa ttcagatttc aacttcatgg caccaaaacc
    16801 atcgatttta caatcaatat tatgatcgcc ttcaacgata cggatgcctt taacgcgtgt
    16861 accttgttta aggtccttag gcgcaccttt cactttcaag tctttgataa gcgtcacagt
    16921 atcgccgtcc gccaaacgat taccgttagc atcaattgca acaggtccac tttcttcctc
    16981 agctacatct gctgggttcc actcgtaagc acactcaggg caaaccaaga gggcaccatc
    17041 ttcatagaca tattcagaat tacattttgg acaatttggt aaagtttcca ttcttactct
    17101 ccttaacatt tttcatgttc tagtatagca tttgttgaaa aaatgggcaa gatgataagg
    17161 ttttcatact attattcagc cttgcgcagt ttttcaagtg cctcctgaaa aatagctggc
    17221 gcttctgccg taaattcaac aacctcgcca gttctcggat gggtaaatcc aagcgttctg
    17281 gcatgaagaa attggccatg cccttttagt gttttccttg ggccgtaagc ttcatcaccc
    17341 gcaaccggat gaccaatata agccatgtgg acacgaattt ggtgagttcg tcctgtttcc
    17401 aaggtcaatt ccaccaaagt gtagtcacca aaacgctcta aaacctgaaa acgtgtcacc
    17461 gcttctttcc ctttggccgt caccgcttgt ttcttgcggt ctttttcaga acgaccaatc
    17521 ggcgcctcaa ttactccgcg atcgtttggt agattgccgt gtacaatggc ccaatactta
    17581 cgaagggatt tcttatcttt caattcagca gcaagctttg tatgggcatc atcgttttta
    17641 gcaatcatga gcaagccaga tgtatccttg tcaatccgat ggacaatacc tggtcgcaag
    17701 acaccattga tgcctgacaa atcttttaca tgataaagga gagcattaac tagcgttcca
    17761 gacgtgtgac cagccgacgg atgaacgacc atcccttgag gtttatttac aacagcaaca
    17821 tcctcgtcct gaaagacaat ctctaaagga atatcctcag caacatagtc gatttcttct
    17881 acttctggaa tttgataggt taggacatcc ccaacctgca cactatattt agctttttta
    17941 ggctgtccat tgaccaaaac ctgaccagcc ttaatctgct catttgcaac cgaacgagac
    18001 aaatccgtca agtccgacaa tgccttatcc aaacgaatgc caccaatctc aactcttact
    18061 tccattactc tcttctttca taatacaaat aaacaaaatt ccaacaccga cattcagaca
    18121 catatccgcc acattaaaaa ctgggaaact gataaaatcc aagtgaaaca tgtccaccac
    18181 atatcccaat ctaagacgat caataaaatt cccaagagca ccagcaatca tcaaagacag
    18241 actgaataaa gtccagatat tgcccttgat ctgtttgata tagtaccaca ctaggcctgt
    18301 cacagcaaca attgtcatta tcgtgaaaaa ccactgctga ttttgtaaaa tcgaccaggc
    18361 agcaccataa tttcttagat aagctaagct catcaatcct ggtataaatt ccgttaccgt
    18421 atctaattca atattggcaa ctgtccaagc ttttacaaac tggtccaaac caattaattc
    18481 taccatcaaa aatggaaatc caattttacg cattttcatc cttcttctta tcaaaatatg
    18541 cctgcatggt ttcaataaag tctttggcac aagaactaag ttcatcatta gctcgtttaa
    18601 cgtagaccat gcgattgtct acctttcctt tgagaggaat tacggtaatg ccattgacac
    18661 tctcgtcatc aagatagccc gaaccagttg cataggcatc cgtacgctcc aaaattccat
    18721 tcagagtagc acggtctgtc acatcaaaca caaccgagga atccgacgta tcaatcaagt
    18781 tctcggaata ataaagatac gcctcttttt cttgagtgaa ccgtacggta ggtagaccta
    18841 ccaaatctac tggatcaatc tcagctttct ttgtcaaagg atgatcttca cgaaggtaga
    18901 tatgagtctg aaatgcagac aaatctacag cttgcaaatg aagtttatcc aatttctgca
    18961 tgattccttt tgtatttctc tcgttcaaat aaataatacc aagctcgcta taaccttgag
    19021 caacctcatc taaaatctgt actgtagtcg attcaaaaat gcgaaaatga gggtactgcg
    19081 ggtggctacg cgagaactcc gtaatcaacg ggggaagaaa atcataatgc tgacttgaaa
    19141 ttgagaaagt cttctcacct tcctcaggtt gcaaatagag atgctcaaac tgatcaaatc
    19201 ccttaactaa agcctgagct ttctcataga attccatccc tttttgtgtc aaaaaagtcc
    19261 ctgaactagt tcggctaaaa atttgaaaac ctaactcttt ttccaaatca cgaatggaaa
    19321 tggacaaact aggctgggaa acgtacattt tctctgctgc ttcccgaaaa gtaccactgt
    19381 tggcaatggc tacaacgtag cgtaattgtt gaatattcat acctgatacc tcttaaaact
    19441 gcttctacca ttatatcaaa aaaagcaaga atttgctgaa ctcttgcgtt ttcgcaaata
    19501 gactagcccg tcctgttctt caaaactaat ttcttgtata acttccaggt tcccaatttc
    19561 tcttcttcaa ctgcaatttg aaaggctttg gaatttctgt tcgccaaatc atcgatgact
    19621 aattttgcta agttgggacc cataccactt cctctgaaca tttcatctac tactgaacgt
    19681 agaacttata ggcagcgcaa cagtgcagat ggcaaaatat ttttatccta tagagaagat
    19741 attgccgtct taaatcactt ctatcgtaca cttttaaaaa tagcaaaatc aaattacaaa
    19801 aaagactctc cgaaaacaac tcggaaagcc tattgtaaag ccattttcag acttattttg
    19861 cgattgggta aacagatact tgtttcttat cgcgaccttt acgttcgaag cgtacaacgc
    19921 cttctacttt agcgtaaaga gtgtcatctc caccacgacc tacgttagct cctggataga
    19981 tttttgtacc acgttggcgg taaaggattg aaccacctaa tacagtttgg ccgtcagcag
    20041 ctttcgcacc aagacgtttc gcttgtgaat cacgaccgtt tgacgttgaa cctccacctt
    20101 ttttgtgggc cataaattgc aagttagcaa gattcaagtt taacatatgt tattcctccg
    20161 aatttctgta atgattgctt caagctacgc cttaagcgtt gatagcgttg ataacaactt
    20221 ttgtgtaagg ttgacggtga ccttgtttgc ggtggctacc ttttttaggt ttgtacttga
    20281 aggtaacaac ttttttctgt ttaccttgtt tttcaacagt accaacaaca gtagcgcctg
    20341 ctacgagtgg agtacccaca acagttttct caccaccaac aagaactact tcttcgaaag
    20401 taacttcttg acctgcttca acgttcaatt tttcaacgta gatagcttga ccgacttcaa
    20461 ctttaacttg tttgccgcca gttttaatga ttgcatatgt gctcattatg cacctcctat
    20521 gatttttggg ccttgcccga atttgatgtg aagactcgcc tagtaccgtg ggacgaacca
    20581 cttaaacggt attcgtgcgg ttgcacagga tgtgcatagt caacactcct attataacaa
    20641 aaacacctgc aaatgcaagt gttttgtatc atttttctta catttcgaaa acttcgctct
    20701 cctgcttgtt tggtaagaac agagagagga cgattccgac aagagctggt aataaccatg
    20761 ctaatgattg tcctgccaat ggcagagctg agatgatttt tgaaatagca gtccagttga
    20821 attgtcctgc taacacttct accaatgaca aagctgtcac tactcccaca gttaattgca
    20881 taccataagt ggaaagcggt acaaatttgt taacaatggt aatcaagaca atacagatag
    20941 taattggata gagaaccaaa agaactggaa ctgagaaggt gatgatattg ttcaaaccga
    21001 ggttggcaat cccaaagcca atcaaagtaa agatagtcgc atatactttg tagctaaaac
    21061 gtgggaaacg ctcagcgaaa aattcacctg aagaaacaat caagccagcc gttgtcgtaa
    21121 agcaagtaac gataaccatg gcagctaaga aaatttgtgc acctggtcca aaaatagcct
    21181 gtgttgcttg cgaaagaata taaacaccct tattggtatc ggacgccaaa acatcagcag
    21241 gtaccgggaa atgatttcca agaaatgcca aaccgacata tagtgctgag aaagctaaag
    21301 ctacaacaaa accaacagac cagatggttg aaacatattc tttcttgttg gagaaaccaa
    21361 gttgtttcaa ggtattgaca gctaccacac taaaagcaac cgccgcaaga gcatcaaggg
    21421 tattgtatcc ttcaataaat cctgtaccaa atgcctgtcc agctgagtaa gcttccgaag
    21481 ctggtaacgg acttgttgat ccgtacttaa caataccaag cataaccaaa atcacaatca
    21541 aaatagcgaa tactggtgtc aaaatacgac caatactgtt caagatttga gatggattga
    21601 gggcaatcag gtaggctgca acaaagtaga gggctgtaaa accgaacaac caaattccaa
    21661 ggtttgcttc actcaacaat ggcgcaatac caatttcaaa ggacgttgtt gctgtacgcg
    21721 gaatggcaaa gaaaggaccg atagccaaat acaaggcaac aagataaatc gttgcaaaag
    21781 tcggtgaaat cttgcgagaa atctcatgca catatccttt ggggtttaat gtaccgacaa
    21841 tcaaggcaac aacagcaata ccgacacccg atacgacaaa tcctaaaata gctggccaga
    21901 aattctcacc agataagacc cccaaagccg gtggaaaaat caagtttcca gcaccaaaaa
    21961 acataccaaa caggagtaat cctgttagtg ctcctttttt cataataact cctttgtatt
    22021 tttctgaagt cttattatat catacaaatt caatttttcc gaacgattcg aactaaaaaa
    22081 tccagcaata gctggattta aatgtatgcc aaaagaattg aattctacag taagtcttca
    22141 attaaactat ccacttcgtc tttcacttct tctttcggtg tgatttcagt tacgataatc
    22201 ccagccacag ctcgttccac caagccttca acatccattc gagcctcgta ttgctcgaca
    22261 tttttgattt tagggttagt ttttggacgg tcaggggcaa agatggtaca gcaatcttca
    22321 aatggctgga tggaaatatc aaaggtatca atttcttgag caatatcaat gatttccaac
    22381 ttgtccatgg taacgactgg acggataaca ggtgtatttg tcaccgcatt gatagcctgc
    22441 atggattcca aggtctgact tgccacttgt cctagacttt caccattgat aataaccata
    22501 gcaccacgct cttcccgtac tcggtctgta atccgcatca tgaagcggcg tgtcaaggtc
    22561 atcaaataag cttcaggtgc tttttccttg atttcttcct gaatttctgt aaacggcact
    22621 tcgataaagg tgatattacc accaaaggca gtcaatttgc gggtcaaatc atgggctttt
    22681 ttaagtgcac ctgggctagt ataaggcgga cttgcaaagt gaagagcttc aatttcaacc
    22741 ccacgtttca gtgctaaata gcccgcaaca ggcgaatcaa taccacctga taacataagc
    22801 gttccttttc cagatgttcc aactggcaaa ccgcctgctc ccttgatttc ttcatgggaa
    22861 atataagcag catcaggacg aatttccacc cgcaaggtaa tatctggcga cttcatctgt
    22921 acctgtacat ttggaatagc tgtaaaaacc gcatctccaa ggacttggtt aaggtcacgg
    22981 ctgtccaatt caaaattgtg gtcactacga cgtgctgcaa tcttgaaggt catcccttcc
    23041 ttgtaaatgg actgcattat ttccacaact gcttctttca aagctggaac agacttttca
    23101 atcttataag atggtgcgaa attttggatc ccaaaaatct tcttcaaaga agctgaaaca
    23161 tcctgataat ctgccccatt caaatagaca tgaccacggt cacggtcaaa ataaaccgtc
    23221 acttctgggt aaacagaaag gacatgcttg atattgttac gcagtttgtt gacaaaccgc
    23281 atcttgtttt ttcctttagt tgacaattcg ccatagcgaa tcataatttc tgaatagttc
    23341 atgctacctt actttctgtg tgttttgata aatttgtttg aaaattgtga ggaattgttc
    23401 gatttgcccc atatcgttgt catcatccaa gctgatacgg acggcagttt gagccaactt
    23461 ctgcggaaca cccatggcaa tcagagtacc cgcaggctta cctgccttag atgagcaggc
    23521 cgacgtggtc gaaatgtaaa tctggtggtc ttcaaaggca tggacgatga cttcaccacg
    23581 gatattttta atcccgaaag ttacaatact gtgcacaaag tcctctagcc cagaaaaaac
    23641 tgtcacatcg tcgtatttgc ccaattcatc taccagaatc tgcttcatgg ctacaagtcg
    23701 cttctggctg tctgtcgcct tgtccaaggt caagcggagc gccttagccg ttgctgcgat
    23761 acctgccaca ttttcagttg ttgagcgttt atcgctttcc tgtcctcccc ctgtcaatag
    23821 cggagcgatt ttcttgccag ctttgacata gacgaaacct actcctctga cagagtggaa
    23881 tttgtgacct gaaaaactgg caaaatcaac tcggtctgtc aaatatcgtt ccgttggcac
    23941 cttgccgata gcctgcaccg catccacatg gaaggagatg gttggcttat cagctaacag
    24001 ttgagatatt tcctgaatgg gctgaatagc accaatttca ttgttgacgg ccatgataga
    24061 aaccagtatg gtatctggac gaatcaagct ttctaaggct gaaacatcaa caaaaccttg
    24121 ggcattgacc ggagccaaat ccacctcaaa accttgcgtt ttgagccaaa gtgcagactc
    24181 ttttaccgct ggatgctcaa tagctgacac gatgatgtgc ttgcccagat gtgccttttc
    24241 aaatgctact cccttgatga cccagttgtc accttccgta ccacctgagg tgaaaaagat
    24301 ttctttgcta tccttgccta gtaattctgc gatttgcttg cgagatgctt ccaaaatacg
    24361 ggttgcctga ctgcctagac tatggaggct agaggggttt ccccagattt ttgtcgccac
    24421 ttccgtatag gtcttgagaa cttctggata gacctgtgtc gttgccgcat tatcaaaata
    24481 aatcattttt tatattcctt ttattgcaat agtcctattt tatcatgttt tcatgccttt
    24541 cggcaatctt taagatagtt ttaaacttgg ttttttatga tgaacttgga ggatagcaca
    24601 tgagatcaac aaaaagaaaa gaacacgttt ctgccttaac aaaactacaa aaatttttga
    24661 cctttatagg ttcgatttta ggaattatta ctgcttgtat taccatttat accttcactg
    24721 caaaatcaac tgttgcccat actaacccta gtagctcgat aagctcatct agttctacta
    24781 acactaaaac atcttcagca gttagcccaa ccatcaatat acaagcatca acaagttcta
    24841 gtactgaaac gacagctcct agccaaaccg aaactagctc tacagtagat tacagcagtt
    24901 catcaacaac tacagaaact tcatctagtc aagaaatcca aacaagtata acagaaacaa
    24961 cgagtagtac agaaaactct actgaagcat ccacaagttc ttcccaagaa taaccagata
    25021 aatatttgca caactgctct tggtttgata tactaaatct aggaggtgct gtatgaaata
    25081 ttttattctt agaataccta ttttagtttg gttattgtta ttttcattca ttgaaatctt
    25141 cctgctagca tcatttttac cagaaccgtt taacaccaat tctcttcttc ccatagttat
    25201 cttatctagc tgtgcagtta gagtatcgaa tgaagtcaaa gaaagagatg gacaatacac
    25261 tccattcaaa cagttatggt gggcggtact tgcttggatt atcttgggta tccttttcgg
    25321 attgactgtc caggcacccc tatcaaaaca ccttgtcttt atcatcaaag ctattttagg
    25381 aggaataggc taccgcctta ttgaacgcta taccgtctat cgctatcact atttacagac
    25441 gaaaaagaaa ggttgaccct ttctttttta gttttctaaa gtatttttct taattcatca
    25501 atatcttctt ggctagttga ccagctggtc gcaaagcgga tgatactgtg gctatcgtcg
    25561 tatttctccc agaagccata ggcaattcca gcttctgtca atctagccaa ttcttcattc
    25621 ttaacaataa caaattgctg attggtcggt gatttgagat agaattgaaa gcctttctct
    25681 tccaaaatct ggatcagttg ctctgccatt gcgatagcat gacgccccaa ttcaagatac
    25741 aagtcatcag taaataagca atcaaactgg actcctgtca ctcttccttt cgccaacaat
    25801 gcaccatggt gtttgacgat cgatacgaaa ttcttaggct ggttgttctt tgtaaatacc
    25861 aaagcttccc ccatcaaggc accgagtttt gtaccaccaa tgtagaaaac atctgtcagc
    25921 tctgcaattg tcttcaaatc aagatccgtt tcacgagcag caagaccata acccaaacga
    25981 gctccatcta aaaaaagcgg gatgttgtga taacgacaaa ctgttgacaa ggcttctagc
    26041 tctgttttgc tataaagtgt accatattca gtcgggtggg aaatataaac cattcctgga
    26101 tgaaccatat gagcatggtt agcatcagca tagaaatctt tgatgaagtt atcaacccca
    26161 cttgccgtta ttttcccttc atgatgcggc agtgtcaaca ccttgtgtcc agaaaattca
    26221 atggcaccag cctcatgtgt agaaatatga ccagtatccg ctgcaatgac tccttcatag
    26281 gaagctaaca tagacgaaat gacaatttga ttggtctgcg tgccacctgc taaaaacgta
    26341 acttgtgcat gaggacagtc cgtagcaagt ctgatttttt cgatagcaga ttcagtatat
    26401 ttatcagtgc catatccaga taaaccttct tggttgctag caaccaaagc ttcaagcagg
    26461 actggatggg cacctttgtt atagtcattt tcaaaatgta acatctcaca acctccgtaa
    26521 aatataaaat aaaaaagcct gttaatgcag gcttttcact ttagtccgtc ctgagggaat
    26581 cgaaccccca tctcaagaac cggaatctta cgtgatatcc attacactaa ggacggaaag
    26641 gaaaaacttg cactaggcaa gtttttatat gaattacaat tcaatgtcac cgaaaaggtc
    26701 agccattgag aatccagatt gagtttctgg caattcgtaa tcacgttttt cttcacgttt
    26761 ttgacgacgt ggacgtggag cacgtttttc agctttttct tcgccttcag cagctgctgg
    26821 acgctcttcc aaagctttga tagaaagtga tacacgctca tcagcagcat tcacttcaag
    26881 aactttaaca gttacttctt gacctactga caaagcatct tttggatttt caacacgttt
    26941 gtgtgaaatt tgtgaaatgt gtaccaaacc atcgatacct ggcaatactt caacaaacgc
    27001 accgaagtca gtcaagcgtt ttactttacc ttcgatcaca tcgccagctg ccaatttttg
    27061 ctcaacgcca tcccatgggc caggctgtgt agctttcaat gacaatgata cgcgaccttc
    27121 aacttcgtcg attgcaagaa ctttaacttc aacttcttca ccaactgtta cagctgattt
    27181 aggagatacg ttacgctcgt gtgacaattc agtcaagtgt accaaaccat ctacaccacc
    27241 aaggtcgatg aaagcaccga agcttgtgat acgtgcaact ttaccagtta caacttcacc
    27301 aactgccaat ttaccgaata cttcagcacg tgcagctgca gcttctgctt caacaacgtc
    27361 acgacgtgac aagatgaaac ggttctcagc aggatcaact tctttgattt tagcatcaaa
    27421 ttcttgacct acaaaacgct cagtgttacg agtgaaacgg ctgtcgatca ttgaagctgg
    27481 gatgaaacca cgaagaccct caaattcaac tgcaagacca cctttaacgg cacgagttac
    27541 tttaactgta acaacttctt cttcacgacc aacaagcttg tcccatgctt tacgtgcttc
    27601 caaacgtttt ttagatacaa gataagtaac agtgtctgta tctttaccaa caacttggcg
    27661 aagtactaac aattcaagtg tttcaccaac ttttacaagg tcgttgatat cagcatcacg
    27721 gtcgttagtc aactcacgaa gagtcaatac gccttcaaca ccagtacctg agatagctac
    27781 gtttgcttga ccagcatcaa ctgtcaatac ttctgcagtt accacatcgc caggtgtaac
    27841 ttcgcttaca ctgttcaaca aatcttcaaa ttcgttcatt ataaaaaaac ctccgacaat
    27901 caggtctttc gacccaacat aaaatatatt ttatttaagg cacacgcaag gacaacaaca
    27961 attagacatc tttgacgaac tagactatat ctagtacctt tactggggta gctggattcg
    28021 aaccaacgca tgagggagtc aaagtccctt gccttaccgc ttggcgatac cccaatatac
    28081 accactaaga taacgttctg aaatgaactc gggctaaacg ctgtgtaaaa aagataagtt
    28141 gcctggcaaa tcaagatttg ctgtcaactt cctattttta ctgtgcgttt gacgccctta
    28201 gtatcttaga tatggagaga gagggattcg aacccccgaa cccgaaggag cggatttaca
    28261 gtccgctgcg tttagcctct tcgctatctc tccgtacact aacagtcact attctaacat
    28321 aaaatagcga ctattacaag ccttttagtg acttaaatta taattttcaa taatattttc
    28381 gactgctttt tctaattttt tgtaaaagct ttcggtgttt ccatttttta taactgcaaa
    28441 gttattttca gccaattctg caatttctcc aattactttt ttacctataa caaggcggta
    28501 gccagggaac tcttctctat tgacaagaac tttgctatct tcaatctgaa tttcaatttt
    28561 tttatctttt ttactcattt tcaaacctca ctttcactat tctacaaaaa aagagaagag
    28621 cttgcaagtg caagccctct gaaattaatc tacttcgaca atccagcctt caggagcttc
    28681 aatatcacca aactggatac ctgttaattc ttcatacaat ttacgagtga caggtcctac
    28741 ttctgtttca ctatggaaaa tatggagttt gtctgcaatc tggataccac caattggtga
    28801 gatgactgca gctgttccgc aggctcctgc ttcgacaaac tgatctaatt cttcgacaag
    28861 gacttcacgt tccactgcct tcatccccag acgatgctct gccaaataca agagagaata
    28921 cttggtaatg gacggcaaga ttgatggtga aatcggtgtg acaaactcgt tattggctgt
    28981 aatcccaaag aagttagcag accctacttc ttcaatcttg gtgtgggtag ctgggtctag
    29041 gtaaatcaca tctgagaagc cctgcttttt ggcatattga cccggtaaga gcgatgctgc
    29101 gtagttaccg ccgaccttgg ctgccccagt tccgttaggt gctgcacggt cgtacttgtc
    29161 ttggatgagg aagttggtcg gagccaggcc gcccttgaaa tagttgccaa ctggcatggc
    29221 gaaaacggtg aaaatatact cttccgcagg tttgacgccg atgatgtcgc cgacgccgat
    29281 gaggagcggg cggagataga gggtgccacc agttccatag ggaggaacgt agtctgcatt
    29341 ggctttgacc acttctttac aagccttgat gaaaagatca gtcggtacag gctccatgag
    29401 caagcggtca gctgtccgtt gcaggcgctc agcgttttgg tctggacgaa agagctggag
    29461 ttttccctcc ttggtacgat aggctttaag gccctcaaag gcctgctgcc catagtgaag
    29521 ggctggtgag ctttctgaaa tgtgcagttc cgcatcttcg gtcaattgcc cctcagacca
    29581 ctggccgttt ttgaaatgag cgatgaagcg ataaggtagt ttcatataag aaaaaccaag
    29641 gttttcccag tcaatgttca ctgtcatata gtttctccaa attcattttt tattatttta
    29701 ctacttttga aagtgatttt caattaaaaa ttcagaaaat tttgtgaata taagaaaaag
    29761 cctggtaaac cagactctta ctctttaaaa acaaattcta gttgaatttc aggtgagata
    29821 gcactgaata aattttgata gtaggttttg gctgactctt ttatgtcctc ctgataatct
    29881 gctagaaacg tttcttgttc tgctgactga aattcatctg tgataagttg ggcagtatcg
    29941 atctcttctg tcgcaaaact cagtatctca ccactcttat catataaggt ataaggttct
    30001 tctgcatcta attccaatcc aatgacttca aaggctggaa gggtaatttt gtaccgattt
    30061 tcagaaagat gttcaataga tacaggactt ttgataccaa attttgcctt gtacttgata
    30121 attaagaggg ctgatttctc tgagaagggc atttcttgac caaataagac cgtgtagttt
    30181 ttagcagtca caattttctg gacagctgta tttagaaata ccaattcatt gacttgctcg
    30241 acagactcaa tagccgtatg gacactcact tcctgctgat tactcttttc accagagatg
    30301 taaccgtatc cccatacacc acacaataac agaaggaagg acagaacaag ccatagatag
    30361 acttttatac tgaaaaataa tttgataatt ttcataatat ttacctcctc tacagtatag
    30421 caaaaagccc tgacccactt ctcag
//
LOCUS       DASFRC010000006        28488 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.006, whole genome shotgun sequence.
ACCESSION   DASFRC010000006 DASFRC010000000
VERSION     DASFRC010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 28488)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28488)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28488
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.006"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            37..777
                     /locus_tag="U1087_000205"
     CDS             37..777
                     /locus_tag="U1087_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HEM4754730.1"
                     /translation="MKKDFFVIGDVHGKFELLLDILKKWNEERQQLIFLGDLIDRGEN
                     SKACLELVWSLVREKGAICLTGNHERMFLAWLRDPLERYDHYRRNGGDTTINSLLGRP
                     LDAPVDGLVDANAVMEQYGDLIDFVKSCPYHLETEGYIFVHAGVDLTLPDWRKTSNHD
                     KVWLRTPFHEAENTTGKMIVFGHTPVYNLFQTQLRISQVWTSPDGKMGIDGGAVYGGV
                     LHGIVLDDTGLVKDNIIGAVYPRKHTSD"
     gene            853..1551
                     /gene="dapD"
                     /locus_tag="U1087_000206"
     CDS             853..1551
                     /gene="dapD"
                     /locus_tag="U1087_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017768831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-acetyltransferase"
                     /protein_id="HEM4754731.1"
                     /translation="MTAQKMTAQEIIAFIGNAVKKTTVKVTFEGELAGPVPAEVTKLG
                     NVLFGDWKDVEPLLANLTENVDYVVEQDGRNSAVPLLDKRNINARIEPGAIIRDQVTI
                     GDNAVIMMGAVINIGAEIGPGTMIDMGAILGGRATVGKNSHIGAGAVLAGVIEPASAE
                     PVRVGDNVLVGANAVVIEGVQIGSGSVVAAGAIVTQDVPENVVVAGVPARIIKEIDAQ
                     TQQKTALEEALRTL"
     gene            1561..2688
                     /locus_tag="U1087_000207"
     CDS             1561..2688
                     /locus_tag="U1087_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006151341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyldiaminopimelate deacetylase"
                     /protein_id="HEM4754732.1"
                     /translation="MLDLIATHRALHQIPELGMEEFKTHAFLMETIENLLEDCNFAQV
                     RTWKTGILVYLTGSAPEKTIGWRADIDGLPIVEETGLDFKSFHPDRMHACGHDFHMTI
                     ALGLLEKMAEQQPRNNLLFLFQPAEENLAGGMLMYEAGAFGDWLPDEFYGLHVRPDLK
                     VGQMATNRATLFAGTCEVKIRFTGKGGHAAFPHTANDALVAASYFVTQVQSVVSRNVD
                     PIEGAVVTFGSMHAGTTNNVIAETAFLHGTIRALTQSMSLLVQKRVREVAEGIALSFG
                     VDLEIELNPSGYLPVENNPQLADELMTYFDGIDGVEMIDCPPAMTGEDFGYLLNKVPG
                     VMFWLGVDTPYPLHNPRLSPKEEVLPFAVDKLSDFLKMKAR"
     gene            2729..3271
                     /locus_tag="U1087_000208"
     CDS             2729..3271
                     /locus_tag="U1087_000208"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEM4754733.1"
                     /translation="MDKKSIRQEVLQSLKGLPSSQRARWNQQLTERLLASEAYQGAKS
                     LGTYLSMPHEFDTSYLIEQAQKDGKQIFIPKTYSQGRMDFVEYNPDDLVKSRFGVWEP
                     GTYSQPVDKSVVKLIHVPGLAWNQAGFRVGYGGGFYDRYLVDYQGETVSTLADFQIYD
                     FEPDVFDIPVKELLIFEELF"
     gene            3255..3932
                     /locus_tag="U1087_000209"
     CDS             3255..3932
                     /locus_tag="U1087_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEM4754734.1"
                     /translation="MKNFFDKRYPVTNGLLAITALVFLLIQVFRFGQTTAAYTIFEFG
                     GMFGEVVRYDPTQLWRLISPIFVHIGLEHFIFNSITLLGLGYQLEGLFGSRRFFLLYI
                     LSGIMGNLFVLFFTPDVVGAGASTSLFGLFAAMALLRKFSRSPYLQVLGQRYMVLLGL
                     NLVLGLFNPTISMAGHIGGAVGGCLVVMFLPPLVEKDLFTGKQIFFSFIGYVGLIALL
                     LGIFYVT"
     gene            complement(3948..4850)
                     /gene="galU"
                     /locus_tag="U1087_000210"
     CDS             complement(3948..4850)
                     /gene="galU"
                     /locus_tag="U1087_000210"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HEM4754735.1"
                     /translation="MTKKVRKAVIPAAGLGTRFLPATKALAKEMLPIVDKPTIQFIVE
                     EALRSGIEDILVVTGKSKRSIEDHFDSNFELEYNLKEKGKNDLLKLVDETTGIRLHFI
                     RQSHPRGLGDAILQAKAFVGNEPFVVMLGDDLMDITDTKAVPLTKQLMNDYEKTHAST
                     IAVMPVPHEEVSAYGVIAPQGEGVNGLYSVETFVEKPKPEDAPSDLAIIGRYLLTPEI
                     FEILENQKPGAGNEIQLTDAIDTLNKTQRVFAREFKGNRYDVGDKFGFMKTSIDYALQ
                     HPQVKDDLKQYLIDLGKKLDTKKN"
     gene            complement(4869..5885)
                     /locus_tag="U1087_000211"
     CDS             complement(4869..5885)
                     /locus_tag="U1087_000211"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000415108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HEM4754736.1"
                     /translation="MEKQTIAVLGPGSWGTALAQVLNDNGHSVRIWGNIPEQIDEINK
                     QHTNTRYFKDIVLDEKIKGYKDLAETLDGVDAVLFVVPTKVTRLVAKQVAQALKHKVV
                     VMHASKGLEPDSHKRLSEVLEEEIPADLRSEIVVVSGPSHAEETIVRDLTLISAASKD
                     LETATYVQNLFSNRYFRLYTNNDVIGVETAGALKNIIAVGAGALHGLGYGDNAKAAII
                     ARGLTEITRLGVAMGANPLTYSGLSGVGDLIVTGTSVHSRNWRAGDLLGKGEKLEDIE
                     ANMGMVIEGISTTKAAYELAQELGVYMPITQAIYNVIYQGASIQDAIKEIMSGEFRHE
                     NEWS"
     gene            6027..6476
                     /locus_tag="U1087_000212"
     CDS             6027..6476
                     /locus_tag="U1087_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM4754737.1"
                     /translation="MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAE
                     RSETETFVKDIEAELKISKSVASNLVKRMEKNGFIQVLPSQVDKRYKRLVLTEKGQGK
                     ICHLKAFHEEMHHSLFWGIQKEDFDLVKQVANQLKENIQHYKEKNHV"
     gene            6469..8175
                     /locus_tag="U1087_000213"
     CDS             6469..8175
                     /locus_tag="U1087_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4754738.1"
                     /translation="MFKEAILRYKWYALASVLLTSIVVATTLMQPSYLQDVLTAVLAN
                     DKDEIVRVGKLLLIIAGTGLLAGLVNTIAAAKISQGVSADIREKTFRKIQSFSYANIE
                     EFNAGNLVVRMTNDVNQIQNLVMMLFTVLMRVPLLFVGAFIMAVRTMPELWWMIILMV
                     VLIMAIMAVVMGQMGPRFGKFQNLMDKMNSIAKENLRGIRVVKSFVQEKNQYAKFKKV
                     SNELLDLNLFIGYGFAILQPLMMFISYMAIFASLYLVSGMLETNMEAVGGFTSFMSYL
                     MQIMFAIIMTSFMGMQASRAAISIKRISEVLDTEPAMTFKDVADEELTGKIVFDNVSF
                     TYPHDTEPTLKNISFEIEPGQMVGVVGATGAGKSTLTQLIPRLFDPQEGTVSIGGRDL
                     KEVSQNTLRDTVSIVLQKAILFSGTIADNLRQGAPGADRARLERAAGIAQAKEFIDRL
                     DDTYESQVEERGNNFSGGQKQRMSIARGVIGEPKVLVLDDSTSALDAKSEKLVQEALN
                     HDLKGTTTVIVAQKISSVVKADKILVLDEGRLIGQGTHAELVATNDVYREIYETQKGR
                     EE"
     gene            8176..9960
                     /locus_tag="U1087_000214"
     CDS             8176..9960
                     /locus_tag="U1087_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000859866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4754739.1"
                     /translation="MKTLRFFWFYFKRYKLSFAVIFLAIVAATYLQVKTPVFLGNAIA
                     EMGKIGQAYFMANQTGQADFQPDMADFNGVMLNLFFAYAATVVASLIYTLLFTRIVAH
                     STNRMRKGLFGKLERLTVAFFDSHKDGDILSRFTSDLDNIQNAFNQSLTQVVTNIALY
                     VGMVIMMFRQDTRLALVTIASTPVALIALVIIIRLSRKYTDKQQAAVSKLNAYMDEKI
                     SGQKAIIVQGVQEETIDGFLELNEEVRRTTFKGRLFGGILFPFMNGMSLVNTAIVIFA
                     GSSIVLNDSSLETAAALGLVVTFVQYSQQYYQPIMQVAASWAELQLAFTGAHRIQEMF
                     DEPEEVRPQNAPLFIELKEGVEIKDIDFGYLPGQKVLDKVSISAPKGKMVAVVGPTGS
                     GKTTIMNLINRFYDVNGGSVAFDGRDIREYDLDSLRDKVGIVLQESVLFSGTIADNIR
                     FGDESISQEMVETAARATHIHDFIMSLPEGYETFVTDDENIFSTGQKQLISIARTLLT
                     DPQVLILDEATSNVDTVTEAKIQKAMEAIIAGRTSFVIAHRLKTILNADEIIVLKDGK
                     VIEQGNHSQLLKLNGFYAELYHNQFVFE"
     gene            10062..10505
                     /locus_tag="U1087_000215"
     CDS             10062..10505
                     /locus_tag="U1087_000215"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000701975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HEM4754740.1"
                     /translation="MKIRGFELVSQFTDENLLPKRETAHAAGYDLKAAERISLEPGEI
                     KLVPTGVKAYMQANEVLYLYDRSSNPRKKGLVLINSVGVIDGDYYGNPANEGHIFAQM
                     RNITEETVVVEAGERIVQAVFAPFLLADGDQADGVRTGGFGSTGK"
     gene            10512..11045
                     /locus_tag="U1087_000216"
     CDS             10512..11045
                     /locus_tag="U1087_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM4754741.1"
                     /translation="MQILFVRHSEPDYSMFDQHDNPRLYAGFGRDLAPLTEKGRTLAQ
                     EIASNPIFSQAQVVIASSVTRALETATYIAHAQQLPLLVEPFFHKLRPDMTGQNASQD
                     EAVLAHRLFLENGGAVPETSSARYETAAEMRERFLQALEKYKAYDRIVIVCHGMLIRQ
                     FVPKETIAYCEILEYNL"
     gene            11052..12422
                     /gene="radA"
                     /locus_tag="U1087_000217"
     CDS             11052..12422
                     /gene="radA"
                     /locus_tag="U1087_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HEM4754742.1"
                     /translation="MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEA
                     KNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFNRVLGGGVVPGSLVLIGGDPGIG
                     KSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
                     IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTK
                     EGTLAGPRTLEHMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVL
                     NPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRAS
                     LIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFI
                     GEIGLTGEIRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVISVTTIGEVL
                     QKVFNL"
     gene            12543..13037
                     /locus_tag="U1087_000218"
     CDS             12543..13037
                     /locus_tag="U1087_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HEM4754743.1"
                     /translation="MSYFQNFMKANKAYVDLHGDYHLPLRPKTKVAIVTCMDSRLHVA
                     QALGLALGDAHILRNAGGRVTEDMIRSLVISQQQLGTREIVVLHHTDCGAQTFTNEEF
                     AVQLKRDLGVDVAGQDFLPFTDIEESVREDIALLKQSPLIPDDVEISGAVYDVDTGRM
                     TEVI"
     gene            13245..14003
                     /locus_tag="U1087_000219"
     CDS             13245..14003
                     /locus_tag="U1087_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00266 family protein"
                     /protein_id="HEM4754744.1"
                     /translation="MSDNRMKYTIDSNMQFPLVEIALEAGESAYIQQGSMVYHTPSVT
                     LNTKLNARGGSGFGKLMGAIGRSMVSGESMFITQAISNSDDGKIALAPSTPGQVIALE
                     LGAEQYRLNDGAFLALDGSAQYKMERQSVGKAFFGGQGGLFVMTTEGRGTLLANAFGS
                     IKKLTLDGGSITIDNAHVVAWSRDLDYNIHMENGFLQSIGTGEGIVNTFTGYGEIYVQ
                     SLNIETFAQVIGNHIVGAGGDGGGGSTSLLDAIF"
     gene            14181..14627
                     /locus_tag="U1087_000220"
     CDS             14181..14627
                     /locus_tag="U1087_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family transcriptional regulator"
                     /protein_id="HEM4754745.1"
                     /translation="MKVRIEFDDSLDHVEVVIRTSQLGPEIEQIQQALQQVSRPSLVF
                     YKGSSEYFLSLGDILFFETDGTKIFAHTGDDAYEVKMKLYELGEHLPIYFCRVSKSTI
                     ANARAVYSLDKSFSGTSRISFYQTHKEVHVSRHYYHLLKEKLREVR"
     gene            14632..15291
                     /locus_tag="U1087_000221"
     CDS             14632..15291
                     /locus_tag="U1087_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754746.1"
                     /translation="MKRLLIGAAVIGLAVLVLLRDSLGLHLAMPFWTTVWFVLTFVTG
                     FHRLVKLDWLASIFCFGLAFIAANSVYEWVEFGTWNMFLSLVLLCLGLKLIFKPRKRR
                     LTHGAVTGVIGDKGRETAFGFSTRYIHDDNFLHDSVEVAFGSSTVYFDQAIILGDKAE
                     FHIDAAFASVDLYLPANWQAVVELDSSMSAVNNYATGMGEKMLHITGDMAFSTLNIYY
                     T"
     gene            15378..16658
                     /locus_tag="U1087_000222"
     CDS             15378..16658
                     /locus_tag="U1087_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM4754747.1"
                     /translation="MKKILKNATYLWVLTADMLSNFGDVVYYLALMNYVLLVPNSRLA
                     LAIVTFSEIFPSFMGLFTGYLADKTVNKISTIKLTLLFRVVLYLILGFCMGFEPALWI
                     VVVAATFNVFADFAGFYENGLYTPLGLRVAPKEEREQYSAFRQTVTSLLNIAFQAFSA
                     LLVGLLSYQNLAFLNAGTFLASLLIMQLLTPAFRKLLTEQPLKIAEQPSQPEQETKGP
                     GILASFKQAIVELRKIPEFRLVLITSPLINACGAILYPILVLLISEDPGLVFLNVETT
                     LALTILIFFVGHILGSTLVFTLFKKTSMVTLEVAATFSLLGVFVGMLLHQLPVIFFFL
                     TTMGISSGASGPKFNAKFVNSMPEEQLATIGGAVSTYFMLGQAFTRLLVSGLVLVLTV
                     DQISGLFLTTTGLLVLYVLYWLARNQKTPQNQSV"
     gene            16730..18184
                     /locus_tag="U1087_000223"
     CDS             16730..18184
                     /locus_tag="U1087_000223"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEM4754748.1"
                     /translation="MTKPIRVRYAPSPTGLLHIGNARTALFNYLFARHHGGTFLIRIE
                     DTDRKRHVEDGERSQLENLRWLGIDWDESPETHEQYRQSERLDIYQKYVDQLLAEGKA
                     YKSYVTEEELAAERERQEAAGETPRYINEYLGMSEDEKAAYIAEREAAGIVPTVRLAV
                     NETGIYKWNDMVKGEIEFEGGNIGGDWVIQKRDGYPTYNFAVVVDDYLMKISHVIRGD
                     DHIANTPKQLMVYEALGWEAPEFGHMTLIINSETGKKLSKRDTNTLQFIEDYRRKGYM
                     PEAVFNFIGLLGWNPGGEEEIFSREQFIQLFDENRLSKSPAAFDQKKMDWMSNEYIKN
                     ADLETIFNLAKPFLEEAGRLTDKAEKLVELYKPQLSSADEIVGLTDLFFSDFPELTAE
                     EKEVMAGETVPTVLNALKEKLEAMTDEDFQPDNIFPQIKAVQKETGIKGKNLFMPIRI
                     AVSGEMHGPELPNTIYLLGREKSIQHIDNMLKSL"
     gene            18323..19699
                     /locus_tag="U1087_000224"
     CDS             18323..19699
                     /locus_tag="U1087_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEM4754749.1"
                     /translation="MENHNFENQGTFNREMNSRHLQMLSIGGVIGTGLFLSSGYTIAQ
                     VGPFGAVAAYLFGAVMVYLVMFSLGELSVAMPVTGSFHTYATKFISPGTGFMVAWMYW
                     LCWVVALASQFVGAAQLMQRWFPSVPIWIFATIFAVIVFGLNTLSVGWFAKAEDALSS
                     IKVYAIAAFIVLGTLAIFGILPFEGTNAALLFNNITSNGLLPNGLVGFITVMLSVNYA
                     FSGVEMIGIAAGETDNPKKAVPQAIKSTIGLLVIFFVLTIVVLAALLPMSEAGVTEAP
                     FVLVLDKIGFPYAADIMNFIILTAILSASTSGLYASSRMLWSLANEGMISKELVKINK
                     HGVPMRGMILSMIGVVIALIASIYAEDTIFLALVSIAGFAVVIAWLAIPLAQIGFRRE
                     FLKTHSEDELEYKTPFSPTLPWITVILLVISIIGIGWDPSQRAGLYFGVPFMIGCYIY
                     HYIRFKKW"
     gene            19712..20659
                     /gene="mmuM"
                     /locus_tag="U1087_000225"
     CDS             19712..20659
                     /gene="mmuM"
                     /locus_tag="U1087_000225"
                     /EC_number="2.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002351766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase"
                     /protein_id="HEM4754750.1"
                     /translation="MGRFKELLEQKEYIILHGALGTELEFRGYDVSGKLWSAKYLLEN
                     PQYIKDIHKDYIRAGADLVTTSTYQATFEGLAEVGLSQAEAEDLICLTVDLAKEARDE
                     VWAELSEAEKAQRTYPLISGDVGPYAAYLANGAEYTGDYGNISLSELKDFHRRRIELL
                     LEQGAELLGLETIPNVLEAQALVELLAEDFPEAEAYISFTSQDGQSISDGNSIEKIAE
                     LINSSEQILAVGLNCTAPSLYPAFLSQLREKTDKPFVTYPNSGEVYDGATQTWKEKAD
                     DSHSLLDNTLEWHELGAKVVGGCCRTRPADIADLVAGLK"
     gene            complement(20709..21209)
                     /locus_tag="U1087_000226"
     CDS             complement(20709..21209)
                     /locus_tag="U1087_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEM4754751.1"
                     /translation="MEIWNAYTADGQLTDHTLTRGESIPDGLYHLVVECIIRHHDGST
                     LFMKRDSTKPSYPNYYEATAGGSALFGEIAEQAILREVREETGIELTVDQLRHHTHFV
                     AHDDQCIFHCYWAETDWDKAAIQLQANETSNYIWVPQEKLKDFLETELVIPSQKDYVE
                     RLFLES"
     gene            21330..22205
                     /locus_tag="U1087_000227"
     CDS             21330..22205
                     /locus_tag="U1087_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM4754752.1"
                     /translation="MQTIVPHLWYDTEAKEAVAFYVELFGGKIDWTYTITDTPSGDSD
                     LIQFQLGDMTLAAISAGPYFKLNESMSLMVNVASKDEVTRLYQALSEGGRILMPLGEY
                     PFSPYYVWLEDRFGLSWQLSYAPDLDKSYQFDISLLFSQEQVGLAQPMLDYYKDKLPQ
                     ASVGQLSYYGEGEAAVEAAKLNYAELLVGGQKMIVMDHGYGGEASFNEAFSLMVYVDS
                     QEEAESWYEKVSAVPEAEICGWAKDQFGISWQIVPRILMEAYDTASPEKVKAVNAAVM
                     TMKRLDIVAIQALLN"
     gene            22311..22838
                     /locus_tag="U1087_000228"
     CDS             22311..22838
                     /locus_tag="U1087_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription repressor NadR"
                     /protein_id="HEM4754753.1"
                     /translation="MKATERRKKILSLLRESLDPLAANYLAKEFGVSRQVIVGDVALL
                     RAEGEAVLATPRGYLLQSSLPSTEGAYIRKIACQHGPEEVEKELTILLEGGAQILDVE
                     IEHPIYGLLSGKLNIASLEDRDHFLDALGQYQGVLLSNLTEGVHTHTVSFPSVQAYNE
                     LSAALKHAGILLENQ"
     gene            22908..23456
                     /locus_tag="U1087_000229"
     CDS             22908..23456
                     /locus_tag="U1087_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754754.1"
                     /translation="MSQLTLSSKNSVKQLSISAILTAFAILIPLMMPIKIIIGPASYT
                     LASHIPLFIAMFISPATAIFVALGSSLGFFLAGFPIVIVFRALTHLFFLTLGAVLVKR
                     FPILMDSKRFLLLGIGLNLLHGLGEYIVVMVLTSGQQTSATYWITMLGLVGVGSAIHG
                     LLDFSLAYYFWKILKERKIYQP"
     gene            23649..24842
                     /locus_tag="U1087_000230"
     CDS             23649..24842
                     /locus_tag="U1087_000230"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HEM4754755.1"
                     /translation="MTKEKLILAYSGGLDTSVAIAWLKKDYDVIAVCMDVGEGKDLDF
                     IHDKALSIGAIESHVLDVKEEFAQEYVLPVLQAHAYYEQKYPLVSALSRPLISKKLVE
                     MAHKTGATTIAHGCTGKGNDQVRFEVAIAALDPSLKVVAPVREWKWAREEEIIFAKEN
                     GVPVPADLDSPYSVDQNLWGRANECGVLENPWNEAPEDAFGITTSPENAPDTPEYVDI
                     EFKAGIPVAVNGEKLSLANLIQRLNVIAGKHGVGRIDHVENRLVGIKSREIYECPGAI
                     TLLTAHKEIEDLTLVREVSHFKPIVSNELSNLIYNGLWFNPATDALKAYLAQTQAVVN
                     GTAKVKLYKGSAKVVARKSPNSLYDEDLATYTSADTFDQDAAVGFIKLWGLPTKVNAE
                     IHKKS"
     gene            24856..26250
                     /gene="argH"
                     /locus_tag="U1087_000231"
     CDS             24856..26250
                     /gene="argH"
                     /locus_tag="U1087_000231"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HEM4754756.1"
                     /translation="MEAKKLWGGRFEASLEEWVEEFGASIRFDQKLAKYDIQGSLAHV
                     KMLGQTGIVSQAEAQVIQAGLEELLEEYEAGKLVFDIRNEDIHMNIESLLTEKIGSVA
                     GKLHTARSRNDQVATDMHLYLKDTLFQVVDKLTNLRQILVDLAQEHVETIMPGYTHLQ
                     HAQPISFAQHLLAYYNMFSRDSERFAFNMQHTNVSPLGVAALAGTTFPIDRQMTSDLM
                     GFAKPYSNSLDAVSDRDFILEFLSNASILMMHMSRLCEEIINWCSHEYQFVTLSDTFS
                     TGSSIMPQKKNPDMAELIRGKTGRVYGNLVGLLTVMKSLPLTYNKDLQEDKEGMFDTA
                     ETVLISIDILAGMLKTMTVHKERMAQSTEKDFSNATELADYLASKGPPFRQAHEIVGK
                     LVLECSKAGHYLQDVSFETYQAISPLIQADIYDALSSKVAVSRRNSLGGTGFESIADQ
                     LKSAKEEIQNAKSL"
     gene            26321..26680
                     /gene="rnpA"
                     /locus_tag="U1087_000232"
     CDS             26321..26680
                     /gene="rnpA"
                     /locus_tag="U1087_000232"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HEM4754757.1"
                     /translation="MKKSYRVKRERDFNDIFTKGNNVANRRFVVYRLPKEQKHFRVGL
                     SVSKKLGNAVMRNKIKRRIRHILIECQHQLVADDFVIIARKGVEELSYQEMKQNLIHV
                     LKLAKLYQEGVVIEKES"
     gene            26664..27476
                     /locus_tag="U1087_000233"
     CDS             26664..27476
                     /locus_tag="U1087_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002267318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEM4754758.1"
                     /translation="MKKKVKWAGLLVASLIVLTACGTGPVTSQSTDAWDRLIYWFASI
                     IQFLSINGQIGIGIILFTILIRTLLLPLFQIQMNSSRKMQELQPQLKKLQAEYPGTDM
                     ESRQQLYEATQALYKENGVSMRASMIPLFIQMPILLALFQALTRVEALKVGHFLWLNL
                     GEPDPFFILPILAAVFTFLSSWLTNKSAIEKNMAMTIMTYVMPVMIFFFAVAAASGVA
                     LYWTVSNAYQVAQTLVFNNPFKIIAERQAKIDAEKERQAKIRRAQKKAQKKK"
     gene            27496..>28488
                     /locus_tag="U1087_000234"
     CDS             27496..>28488
                     /locus_tag="U1087_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein jag"
                     /protein_id="HEM4754759.1"
                     /translation="MKFTGASVEEAIQNGLVELNIPRKKAHITVVAREKKGFLGFGKK
                     PAIVDIDVINETTVVKANQKAVRGVPSEINDLNEPVKSVSEATIDLGKVVAAVKEFEK
                     SGQTLDDDIKAQILKNEKEATTILEETGRIEILSEDLLTTTDATTSAKEDVNQEVISE
                     NQADNFADLDIKIEPQYDIEQVVSEVTAYVQEILDDMDVEARIDTSHNRRTINIQVDT
                     NEPGRVIGYHGKVLKALQLLAQNFLYNRYERNFYITINVNDYVEHRAEVLQGYAQKLA
                     ERVLAEQEAYHTDPMSSSERKIIHRIISKMDGLTSYSEGSEPNRYVVVDIEGNHD"
BASE COUNT         7542 a         5863 c         6919 g         8164 t
ORIGIN      
        1 ttttctttgc ttattaaata tggtagaata gagtctatga aaaaagattt ttttgtaatc
       61 ggtgatgtcc atggaaagtt tgaacttcta ctcgatattt tgaagaaatg gaatgaagaa
      121 cgacaacagc tgatttttct tggggatttg attgatcgcg gggaaaattc caaagcttgt
      181 ttggagttgg tctggagctt ggtgcgggaa aagggtgcga tttgtttaac gggcaatcat
      241 gaacgaatgt ttttggcttg gttgcgggat cccttggaac gctatgacca ttaccggagg
      301 aatggtggag atacgaccat taattcccta cttggtcgtc ctttagatgc accagttgat
      361 ggtctggtgg atgctaatgc agtgatggaa caatatggag acctgattga ttttgtcaaa
      421 tcttgtccct atcatctgga aacggaagga tatatctttg tccatgctgg tgtggacttg
      481 actttgccag actggcgaaa aactagtaat catgataagg tttggttacg tacccctttc
      541 catgaggccg aaaataccac agggaaaatg attgtctttg gacatacacc tgtgtataac
      601 ctctttcaaa ctcaacttcg gattagtcaa gtctggacca gtccagatgg gaaaatgggg
      661 attgatggag gagctgttta tggcggagtt ctccatggga ttgtactgga tgatacgggt
      721 ctggtaaaag ataatattat aggtgctgtt tatccaagga aacatacgag tgattgagaa
      781 aacaaaattt ccccaaattt tctgaaaatt ttgatataat agaaaaaata ttatttttag
      841 attggaatca ttatgactgc acaaaaaatg actgcacaag aaatcattgc ctttatcggt
      901 aatgcggtga aaaaaacaac tgtgaaagta acttttgaag gggaattggc tggtcctgtt
      961 cctgcagaag tgacaaaact tggcaacgtc ctcttcggtg actggaaaga cgtcgagcca
     1021 cttttggcaa acttgactga aaatgtagac tacgtggttg agcaagacgg ccgcaattcg
     1081 gctgtgcctt tgctggacaa gcgcaatatc aacgcccgta tcgagccagg tgccattatc
     1141 cgagaccaag tgaccatcgg cgacaatgct gttatcatga tgggagcggt gatcaacatc
     1201 ggtgcggaaa tcggtccagg taccatgatt gatatggggg ctattctcgg tggtcgtgcg
     1261 acggttggta aaaacagcca catcggtgca ggtgcggtcc ttgcaggtgt catcgagccc
     1321 gcttctgccg agccagtgcg tgttggtgac aatgtcttgg tcggtgccaa tgctgttgtc
     1381 atcgaaggtg tacaaatcgg tagcggttct gttgtggccg caggtgctat tgtgacccaa
     1441 gatgtccctg aaaacgtagt ggtggcaggt gtgccagccc gcatcatcaa ggaaatcgac
     1501 gctcaaaccc aacaaaaaac agccttggaa gaggctttgc ggacactcta agaggtagct
     1561 atgctagatt taattgcgac acatcgtgca cttcatcaga ttcctgagct gggtatggag
     1621 gaattcaaga cccacgcctt tcttatggaa actattgaga acttgctgga agattgtaat
     1681 tttgcccaag tccgcacatg gaagacagga atcttggttt atctgacggg ttctgctcca
     1741 gagaaaacaa ttggctggcg ggcggatatt gacggcctgc ctatcgtgga ggagacgggc
     1801 ctggacttta agtccttcca cccagacagg atgcacgcct gcggacatga tttccacatg
     1861 accattgcct tggggctttt agagaaaatg gcagagcagc aaccgagaaa caaccttctc
     1921 ttcttgtttc agcctgcgga agaaaatcta gcaggtggca tgctcatgta tgaagcggga
     1981 gcatttgggg attggttacc agatgaattt tatgggctcc atgtccgacc tgacctcaaa
     2041 gtcggtcaaa tggccaccaa ccgtgcgacc ctctttgctg ggacctgtga agtcaaaata
     2101 cggtttacag gaaagggtgg gcacgcagca tttccccata ccgccaatga tgccttggtg
     2161 gcagccagct actttgtgac tcaggttcag tcggtggtta gtcgaaatgt cgacccaatt
     2221 gagggagctg tggtgacctt cggctccatg cacgcgggaa cgaccaacaa tgtcattgcg
     2281 gaaacggcct tcttgcatgg caccattcgg gctttgaccc agagcatgag tcttctagtg
     2341 caaaagcggg tgcgtgaagt tgcagaagga atcgccctgt cctttggagt agacttggaa
     2401 atcgagctca atcctagcgg ttatctgcct gtggaaaata atcctcagct ggcggatgaa
     2461 ctcatgacct actttgatgg cattgacgga gtggagatga ttgactgtcc acctgccatg
     2521 acgggtgagg acttcggcta tctgctcaac aaggttccag gtgttatgtt ctggttgggt
     2581 gtggatacgc cttatcccct tcacaatcca cgtctcagcc ccaaggagga agtgcttccc
     2641 tttgctgtgg ataagttgag tgattttttg aaaatgaaag caagatagac tggttttcca
     2701 gtcttcttct gaaaagaaag gagtttctgt ggataaaaag agcattcggc aagaggtctt
     2761 gcagagcttg aaaggcctgc ctagtagtca gcgagcaaga tggaatcagc aactaacgga
     2821 acgcctcctt gcttcggagg catatcaagg cgcaaagtcg cttgggacct acctttccat
     2881 gccccatgag ttcgacactt cttacctgat tgaacaggct caaaaggatg gtaagcagat
     2941 tttcatccct aagacctatt cacaaggacg catggatttt gtagaatata atcctgatga
     3001 tttggtgaaa tctaggtttg gagtttggga acctgggact tattcacaac ctgtggataa
     3061 gtctgtggtt aagttgatcc atgtccctgg tttagcttgg aatcaagcgg gttttcgagt
     3121 gggctacggt ggtggttttt atgatcgcta cctagtagat tatcagggag agacggtatc
     3181 gaccttggca gactttcaaa tctatgattt cgaaccagat gtttttgata ttccagtaaa
     3241 ggagttgttg atttttgaag aacttttttg ataagcgcta tcctgtgacc aatggcttgt
     3301 tggctatcac ggctcttgtt tttcttttga tacaagtatt tcgcttcgga cagacgacgg
     3361 ctgcctatac gatttttgaa tttggtggta tgtttggtga ggtagtgcgt tatgatccga
     3421 ctcagttgtg gcgcttgatt tcccctatct ttgtccacat tggtttggag cattttatct
     3481 ttaacagtat taccttgctt ggtttgggtt atcaattaga aggactgttt gggtcaaggc
     3541 gtttcttcct gctgtatatc ttgtctggga taatgggcaa tctttttgtt ctctttttta
     3601 caccagatgt agttggtgca ggtgcctcga cctcgctctt tggtcttttt gcagctatgg
     3661 cacttttgag aaaatttagt cgcagccctt atctgcaggt tcttggtcaa cgctatatgg
     3721 tccttttggg attgaacttg gtcttgggac tttttaatcc aaccattagt atggcaggac
     3781 atattggagg agctgttgga ggttgcttgg tcgtgatgtt ccttccacct cttgtggaaa
     3841 aggatctttt tacaggaaaa cagatttttt tcagtttcat tggctatgtg ggtttgatcg
     3901 ctttgctact aggtatattt tatgtgacat aaaaaaacta gcgcttgcta gtttttcttt
     3961 gtatctaatt ttttaccaag atcgatcaag tattgtttca aatcatcttt tacttgaggg
     4021 tgttggaggg cgtagtcgat agaagttttc atgaaaccga acttatcccc aacatcgtaa
     4081 cggttgcctt tgaattcacg agcaaacacg cgttgcgttt tgttcagagt atcaatggca
     4141 tctgtcaatt gaatctcgtt cccggcacct ggtttttggt tttctaaaat ctcaaagatt
     4201 tcaggagtga gtaagtagcg tccgataata gcaaggtcag aaggagcatc ttctggtttt
     4261 ggtttttcca caaaggtttc tacactatag agaccgttga caccttcacc ttgtggagcg
     4321 ataacaccgt atgcagaaac ttcttcatgt ggaactggca taacagcaat ggttgaagca
     4381 tgtgtttttt cataatcgtt catgagttgc ttggtcaatg ggacagcttt tgtatctgtg
     4441 atgtccatga ggtcatcgcc gagcatgaca acgaaaggtt catttccaac aaaggcttta
     4501 gcttgaagaa tggcatcacc aagtccacgt ggatggcttt gacgaatgaa gtgtagtcga
     4561 atgcctgttg tctcatcaac aagtttcaac aaatcatttt tgcctttttc tttgaggttg
     4621 tattccaatt caaagtttga atcaaagtgg tcttcgatag aacgttttga tttaccagtg
     4681 accaccaaaa tatcttcgat accagagcga agggcttctt caacgataaa ttgaatagtt
     4741 ggtttatcaa caattggtaa catttctttg gcaagagcct tagtagcagg caagaaacgt
     4801 gttcccaaac ctgctgcagg gataacggct tttctaactt tttttgtcat aatgcaatct
     4861 cctttttatt aagaccattc attttcgtgg cggaattcgc cggacatgat ttctttaata
     4921 gcatcttgta tgctagcacc ctggtaaatg acgttgtaaa tggcttgtgt aatcggcata
     4981 taaacgccca attcctgtgc taattcatag gcagccttgg tagtagaaat tccttcgata
     5041 accatgccca tgttggcttc gatatcttcc agtttttcac ctttaccaag caagtcacca
     5101 gcccgccagt tgcgtgagtg aactgaggtt cctgtaacaa tcaagtctcc gacaccagaa
     5161 agcccactat aggtcaaggg atttgcgccc atagcaacgc ctagacgtgt gatttctgtc
     5221 aaaccgcgag cgataatagc tgccttggca ttgtcaccat atcccagacc gtgaagggcg
     5281 ccagcaccta cagcgatgat gtttttcaaa gcccctgctg tttccacgcc aatcacatcg
     5341 ttattagtgt agaggcggaa gtagcggttg ctgaagagat tttgcacgta ggttgcagtt
     5401 tccaaatctt ttgaagctgc agaaatcaag gtcaagtcac gaacgatggt ctcttctgca
     5461 tggcttggtc cagaaaccac aacgatttct gaacggagat ctgcaggaat ttcttcctcc
     5521 aagacctctg acaagcgctt gtgactatca ggctccagac ctttagaagc gtgcatgaca
     5581 accactttgt gtttaagggc ttgagcaact tgtttggcaa ccaagcgggt tactttggtt
     5641 ggtacaacga agaggacagc atccacaccg tctagggttt ctgccaaatc cttgtagcct
     5701 ttgattttct cgtctaggac gatatctttg aagtagcggg tattggtgtg ttgcttgttg
     5761 atttcatcga tttgctctgg aatatttccc cagatacgaa cagaatgtcc gttatcgttg
     5821 aggacctggg caagggctgt tccccaagac cctggtccta gaacagcaat ggtttgtttc
     5881 tccatacgat tcccctgtgt aagtattttc tattattata acatagttgc atttttttgg
     5941 aaaatagcag agccaaaact tgacaatagt tcctaagaga actataatag ttctcatgct
     6001 aattaattga ttggaaagga gtcatcgtgg gacataccat tgcagatttt cggaacttgc
     6061 tcaatcagat tgaacaaatc agtgaaacca ttgcaaaaga atacgatgtg gagcacttgg
     6121 ctggtccaca gggctgggca ttgcgtttca ttgcggaacg gtcggaaacc gaaacctttg
     6181 taaaagatat agaagcggaa ttaaagattt ccaaatccgt tgccagcaat ctggtcaagc
     6241 gaatggagaa aaatggcttt atccaagtcc tgccttctca ggttgacaaa cgctacaagc
     6301 ggttggtttt gacagagaaa ggacaaggaa aaatctgtca cctgaaagcc ttccatgaag
     6361 aaatgcacca ttcacttttt tggggcattc aaaaagaaga ctttgatttg gtcaaacagg
     6421 tggctaatca attaaaagaa aatattcaac actataagga gaagaatcat gtttaaagaa
     6481 gccattttac gttataaatg gtacgcctta gcatcggtct tgttgacgtc aattgtcgta
     6541 gcaacgacct tgatgcaacc tagttatttg caggatgttt tgacagcagt cttggccaat
     6601 gacaaggatg aaattgttcg tgtgggcaaa ttactgctga ttattgctgg aactggtctt
     6661 ttggcagggc ttgtcaatac cattgctgca gcaaaaattt cacaaggggt atctgcagat
     6721 attcgtgaga agacttttcg gaaaatccaa agtttctctt atgccaatat cgaagagttt
     6781 aacgcaggga acttggttgt tcggatgact aacgatgtca atcaaatcca gaaccttgtc
     6841 atgatgctct tcacagtgtt gatgcgggtt ccattgctgt ttgtcggagc cttcatcatg
     6901 gcggtgcgga ccatgccaga actctggtgg atgattattc tcatggtggt cttgattatg
     6961 gccattatgg cggttgtcat ggggcagatg ggaccacgtt ttggaaaatt ccagaacctc
     7021 atggacaaga tgaacagtat tgctaaggaa aacctacgtg gaatccgtgt ggtcaaatcc
     7081 tttgttcagg agaaaaatca gtatgccaag ttcaagaaag tatctaatga actcttggac
     7141 ctcaatctct ttatcggcta tggttttgct atcttgcaac ccttgatgat gtttatctct
     7201 tatatggcga tttttgcgtc cctctacttg gtgtccggga tgttggaaac caacatggag
     7261 gcagttggtg gctttacttc ctttatgagc tacctcatgc aaatcatgtt tgccattatc
     7321 atgactagtt tcatgggcat gcaggcttca cgtgctgcca tttctattaa gcggatcagc
     7381 gaggtcttgg atacggagcc tgcaatgacc ttcaaggatg tggcggatga agaattgact
     7441 ggtaagattg tctttgacaa tgttagcttt acctacccac atgatacaga gccgactttg
     7501 aaaaatatct catttgagat tgagccaggg caaatggttg gtgtggttgg tgcaacgggt
     7561 gcgggtaaat ccactcttac ccaactgatt ccgcgtttgt ttgacccgca agaaggaaca
     7621 gtgtccatcg gtggtcggga cttgaaagaa gtcagccaga acactctgcg tgatacggta
     7681 tcgattgtct tgcaaaaggc tattctcttc tcgggaacca ttgcggacaa cctgcgtcaa
     7741 ggggcacctg gtgctgatcg tgcaagattg gagcgggccg caggtattgc ccaagccaaa
     7801 gaatttatcg accgcttgga tgatacctat gagagccaag tagaagaacg tggaaataac
     7861 ttctctggtg gtcagaagca gcggatgtcc attgctcgtg gggtgattgg tgagcctaag
     7921 gttttggtct tggatgactc aacttctgcc ctggatgcca agtctgagaa actggtccaa
     7981 gaggctctca accatgattt gaaggggaca accactgtca tcgttgccca gaagatttct
     8041 tctgttgtca aagctgataa gattttggtt cttgacgaag gtcgtctgat cggccaaggt
     8101 acccacgccg agctggtagc gacgaacgat gtttaccgtg aaatctacga aacacagaaa
     8161 gggagggagg aatagatgaa gacgttacgt tttttctggt tttatttcaa acgctataaa
     8221 ctgtcctttg ctgtgatttt tctagccatt gtggcagcga cttacttgca ggttaagaca
     8281 cctgttttcc ttggaaatgc cattgcggag atggggaaaa tcgggcaggc ttacttcatg
     8341 gccaatcaaa ctggtcaggc tgactttcag ccagacatgg ctgattttaa tggggttatg
     8401 ctcaatcttt tctttgccta tgcggcgacg gttgtggctt ccttgattta cactctcctc
     8461 ttcacgcgta tcgtggctca ttcgaccaac cgtatgcgta agggcttgtt tggcaaactg
     8521 gaacgcttga cagttgcctt ctttgatagc cacaaggacg gggatattct ttctcgcttt
     8581 accagtgatt tggacaatat ccaaaacgct tttaaccagt ccttgaccca agtggtgacc
     8641 aacatcgctc tttatgttgg tatggtcatc atgatgttcc gtcaggatac tcgcttggcc
     8701 ttggtgacca ttgcttctac gccagttgct ttgattgccc tagtgattat cattcgcctg
     8761 tcacggaaat atactgataa gcaacaggct gcggtatcta agcttaatgc atacatggat
     8821 gagaagattt ccggacaaaa agcgattatt gtacaaggtg tgcaggaaga gacaattgat
     8881 ggtttcttgg aactcaatga agaagttcgt cgtacgacct tcaagggacg cttgtttggt
     8941 gggattctct tcccatttat gaatgggatg agtttggtca atactgccat tgttatcttt
     9001 gcaggttcca gcattgttct caacgatagt tcgctagaaa cagctgccgc acttggtctg
     9061 gtggtgactt ttgttcaata ttcgcaacag tattaccagc caatcatgca ggttgctgcc
     9121 agctgggcag aattgcagct agctttcaca ggagctcatc gtattcagga aatgtttgat
     9181 gagcctgagg aagttcgccc tcaaaacgct ccgctattta tcgaattaaa agaaggtgtt
     9241 gaaatcaagg acattgactt tggctacctg ccgggtcaga aggtcttgga caaggtgtca
     9301 atctctgctc ctaagggcaa aatggtggca gtcgttggtc cgacgggatc tggtaagact
     9361 accattatga acttgattaa ccgcttctac gatgtcaatg gtggtagtgt ggcttttgac
     9421 ggtcgtgata ttcgggaata tgacttggac agcttgcggg ataaggtcgg cattgtcttg
     9481 caggagtcgg ttcttttctc aggtactatt gcggacaata ttcgctttgg tgatgagagc
     9541 atttcgcagg aaatggttga aaccgcagct cgtgccaccc atatccacga ctttatcatg
     9601 agcttgccag agggttatga aacctttgtg actgatgatg agaatatctt ctcgacaggt
     9661 cagaaacagc tgatttccat tgcccgtacg ctcttgacag atccacaagt cttgattttg
     9721 gacgaagcaa cctcaaacgt tgatacggtg acggaagcca aaattcaaaa ggctatggag
     9781 gctattatcg ctggacggac cagcttcgtc attgcccacc gcctcaaaac catcctcaat
     9841 gcggacgaaa tcatcgtcct caaagacgga aaagtgatcg agcaaggcaa ccacagccaa
     9901 ctcctcaagc tcaacggctt ctatgccgaa ctctaccaca accagtttgt gtttgagtaa
     9961 agttgaaaac cccagccact aggttggagt tttgctttta gcctacgaat aaattataat
    10021 agagagcgta ttatgcagga agaaattgaa gggaaactac tatgaaaatc cgtggttttg
    10081 aactggtcag ccagtttact gatgaaaatt tattgccaaa acgtgagacc gctcatgcag
    10141 caggttatga cctgaaagct gcggagagga tcagcttaga gcctggtgag attaagctgg
    10201 ttccaacggg tgtcaaggcc tatatgcagg caaacgaagt cctctatctc tacgaccgat
    10261 cgtccaatcc tcgcaagaag ggcttggtcc tgattaactc ggttggggtt atcgacggcg
    10321 actactatgg caatccagcc aatgaaggcc acatctttgc ccagatgcga aacatcaccg
    10381 aggaaaccgt cgtggtggaa gctggggagc ggattgtgca ggctgttttt gcccccttcc
    10441 tcttggctga cggtgaccag gccgacggcg ttcggacagg tggatttggc tcgacaggga
    10501 aatagactac tatgcagatt ctttttgtgc ggcattccga gcccgactac agcatgtttg
    10561 accagcatga taatcctcgg ctgtatgcag gttttgggcg ggatttggct cctttaactg
    10621 aaaagggaag gactttagct caggaaattg ctagtaatcc tatcttttcc caagctcaag
    10681 tagtcattgc ttcaagcgtc acacgggcct tggagactgc gacctacatt gctcatgccc
    10741 agcaactacc tcttctggtc gagccctttt ttcataagtt gcgaccagat atgacggggc
    10801 aaaatgccag tcaagatgag gctgtcttag ctcatcgatt atttttggaa aatggcggag
    10861 cggtgcccga gacttcttct gctcgctatg agactgctgc ggagatgaga gagcgatttt
    10921 tacaggccct tgaaaaatac aaagcctatg accgaatcgt tatcgtctgt cacggtatgc
    10981 tgatacgcca gtttgttccc aaagaaacca tagcctactg cgaaatccta gaatataatc
    11041 tataggagga aatcatcatc gctaagaaaa aaacaacctt tgtctgtcaa tcctgcgaat
    11101 accactcgcc caagtatctg ggccgttgcc ccaactgtgg ctcctggtct agctttgtcg
    11161 aggaagtgga agtcgctgaa gctaagaacg agcgggtcag cctgacaggt gagaagaccc
    11221 gtccgatgaa gctcaatgaa gtatcgtcca ttcaagtggc tcgcactaag accaacatgg
    11281 aagagttcaa ccgtgtcctc ggtggcggcg tggtgccggg cagtctggtc ctgattggag
    11341 gcgatccagg gattggcaag tccaccttgc tcctgcaagt atccactcag ctgtccacca
    11401 ttggcaccgt cctatatgtg tcgggggaag agtctgccca gcagattaag ctccgtgccg
    11461 agcgtttggg cgacatcgac agcgagttct atctctatgc ggagaccaat atgcagagca
    11521 ttcggactga gattgagaaa atcaagccag atttcctgat tatcgactct atccagacca
    11581 ttatgagccc tgacatttct agcgtgcaag gttctgtcag tcaggtccgt gaagtgacca
    11641 atgagcttat gcagattgcc aagaccaaca atatcgcaac ctttatcgtc ggccacatga
    11701 ccaaggaagg caccctggct ggaccgcgga ccttggagca catggtagac accgttctct
    11761 attttgaggg cgagcgtcaa cacaccttcc gtatcttgag ggcggtcaaa aatcgctttg
    11821 gctccaccaa cgaaatcggt atttttgaaa tgcagtcgca gggcttggtc gaagttctca
    11881 atccaagtga ggtctttctg gaagagcgtc tggacggagc gactggctcg gctattgtcg
    11941 tgaccatgga gggcacccgc cctatccttg ccgaagtgca ggctctggtg accccgacca
    12001 tgtttggcaa tgccaagcgg accacgacag gcttggattt caaccgtgcc agcttgatta
    12061 tggcggtttt ggaaaaacgg gccggtctgc tcctccaaaa ccaagatgcc taccttaagt
    12121 cagcaggcgg tgtcaaactg gatgagccag ctattgacct agcggtcgca gttgcccttg
    12181 cctccagtta caaggacaag ccaaccaacc cacaagagtg ctttataggc gagattggcc
    12241 tgacagggga aatccgccgc gtcaatcgga ttgaacaacg gattaacgaa gccgccaaat
    12301 tgggctttac caaggtctat gccccaaaaa attccctgac aggtatcaag gtgcccaagg
    12361 aaatcaccgt tatcagcgtg accaccattg gcgaagtctt gcagaaagta ttcaacttat
    12421 gaaatcattc gggagtgaca gctagtcgct cctctttttg cgacaaatag tcgggaatgt
    12481 gataagctag gtctaaccta tttctgaaaa tttcagaaat tctcatcaga caaggaggtc
    12541 ctatgtctta ttttcaaaac tttatgaagg ccaacaaggc ctatgttgac ctgcatggtg
    12601 attaccattt gcctcttcgt ccaaagacca aggtggctat cgtgacctgt atggactcac
    12661 ggcttcacgt ggctcaggcc ttgggcttgg ctttggggga tgctcacatt ctgcggaatg
    12721 caggtgggcg cgtgacggag gacatgattc gctcgctggt tatttcccag cagcagctcg
    12781 gcacacggga aatcgtggtg ctccaccata cagactgcgg tgcccagacc tttaccaatg
    12841 aagaatttgc ggtccaactc aagcgagatt tgggagtgga tgtggctggt caggattttc
    12901 ttccttttac agacattgaa gaaagcgtgc gggaggatat tgctctcttg aaacaatctc
    12961 cgctcatacc tgacgacgtt gaaatttctg gtgcggttta tgatgtggat acaggtcgta
    13021 tgacagaagt tatataggaa tgctcaggaa gttcggtttt tcctgtaaat tttatctgaa
    13081 tgaccgagaa atccttgaca agtttttttg aatgagataa aattgtatta tcacaacaga
    13141 acaagcggag agataaatga tgcttggttt attctagctt gttcttggtt tattatggct
    13201 atcctgtggt taacaggacc tttcgtaaaa aataggagtc aactatgtca gacaatcgga
    13261 tgaaatatac tatcgatagt aatatgcagt ttcctttggt ggaaatcgcc ttggaagctg
    13321 gtgaatcagc ttatattcaa caggggagca tggtctacca tacgccgagt gtgaccttga
    13381 ataccaagct caatgcgcgt ggtggttcag gttttggtaa attgatgggg gccatcggtc
    13441 ggtcaatggt atcaggcgaa tctatgttta tcacgcaagc catttccaat agtgacgatg
    13501 gaaaaattgc ccttgcgcct tcaacaccag gtcaggttat tgccttggaa cttggggcag
    13561 agcaatatcg actaaatgat ggtgccttcc tggcccttga tggttctgct caatataaaa
    13621 tggaacgcca gagtgttggg aaagctttct ttggtggtca gggtggactc tttgtgatga
    13681 cgacagaggg acgcggaaca cttttggcga atgcgtttgg ttctattaag aagctaactt
    13741 tggatggtgg aagtatcacc attgacaatg ctcatgtggt tgcttggagt cgtgatttgg
    13801 actacaatat ccatatggaa aatggtttcc tccaatctat cggtacaggt gaaggaatcg
    13861 ttaatacctt tactggttat ggagaaatct atgtacagag tttgaacatt gagacctttg
    13921 ctcaggtcat tggcaatcat attgtcggtg caggtggtga tggtggtggt ggaagcacat
    13981 cgttgctgga tgcgattttt taagaagaaa aactctgcaa ttttcaaaat catataataa
    14041 aaataaagtc cctcgcgtaa tgcaagggac ttttcttagt ttatttctac cacttacctg
    14101 tctaattttg ccacttactg aaatgccctt gtaattggat gtcgaactgg tataatagag
    14161 ctatcaaaaa ggagggagct atgaaagtta ggattgaatt tgatgacagc ttagatcatg
    14221 ttgaagttgt tatccgaacc agccagctgg gaccagagat tgaacagatt cagcaagctt
    14281 tgcaacaagt tagtcgtccc tcgcttgttt tttacaaggg gagcagcgag tattttcttt
    14341 cattgggtga catacttttc tttgaaacgg acggaaccaa gatttttgct catacaggcg
    14401 atgatgccta cgaggttaaa atgaaactct atgaacttgg ggagcatttg cccatctact
    14461 tttgtcgggt ttctaaatca acgattgcca atgctagagc tgtgtattca ttggataagt
    14521 ctttttcagg aactagtcgg atttccttct atcagaccca caaggaagtc cacgtgtcgc
    14581 ggcattatta tcatttatta aaagaaaagt tacgagaagt gaggtaggga gatgaaacgt
    14641 ctattaattg gagctgcagt tataggactg gcggttttgg tcttgttgag ggattcattg
    14701 ggtttgcatt tggcaatgcc cttttggacc actgtctggt ttgtattaac ctttgtgaca
    14761 ggttttcacc gcttggtaaa gttggattgg cttgccagta tcttttgttt cggcctagct
    14821 tttatagctg ccaactctgt ctatgaatgg gtggagtttg ggacttggaa catgtttctg
    14881 tcgcttgtct tactctgtct tggcttgaaa ctaattttta aaccaaggaa gcgcagactg
    14941 actcatggag ctgtcacagg ggtgattggc gacaagggac gggaaacggc ttttggcttt
    15001 tcaactcgct atattcatga cgataatttt ctccatgata gtgtggaagt agccttcggc
    15061 tctagtacag tttactttga tcaggcgatt attctgggag ataaggctga atttcatatc
    15121 gatgcggcct tcgcgtcagt tgatctttat ctgccagcaa attggcaggc ggtcgtggag
    15181 ctagatagtt ccatgtctgc tgtcaataac tatgcaactg gtatgggaga aaagatgcta
    15241 catatcacag gagatatggc cttctccact ttgaatatct attacaccta gagtgaacaa
    15301 agagcagtct atttaggctc ctctgtagaa taaaaagtcg gaatattctg gaaattattc
    15361 aaaagaaagg gattatcatg aaaaagattt tgaaaaatgc tacttatcta tgggtactga
    15421 ctgcggatat gttgtccaat tttggcgatg tggtctatta tctggccttg atgaactatg
    15481 ttttgctggt gcccaacagc cgtctggctc tggcaatcgt gaccttctcg gaaatcttcc
    15541 ctagctttat gggactcttt acaggctatc tggcagacaa gacggtcaac aaaatcagta
    15601 ccatcaagct gactctgctc tttcgtgttg tactctacct catcctcggc ttctgcatgg
    15661 gctttgagcc agccctctgg attgtcgtgg tggctgcaac tttcaatgtc tttgcagact
    15721 tcgctggctt ctatgaaaac ggcctctata cacctctggg attacgcgta gcgcccaagg
    15781 aagagcggga gcagtactcg gcctttcgcc agaccgtgac tagcctcctc aacattgcct
    15841 ttcaggcctt ctctgccctc ttggtcggcc tcctctccta ccaaaacctg gcctttctca
    15901 acgccggcac ctttttagcc tccctcctca tcatgcagct gctgacgcca gcctttcgca
    15961 aactcctgac ggagcagcct ttgaaaatag ccgagcagcc gagccagccc gagcaggaaa
    16021 ccaagggacc gggcattcta gcttctttca agcaagcaat cgtggagctt cgcaagattc
    16081 ccgagttccg tctggtcctg attactagcc cccttatcaa tgcctgcgga gctattctct
    16141 atcctatttt ggtcctcttg attagcgaag acccaggcct tgtcttcctt aatgttgaaa
    16201 caacccttgc cctgaccatt ttgattttct ttgttggaca tattttgggg tcgaccttgg
    16261 tatttaccct cttcaaaaag accagcatgg tgacgctgga agtggcagct actttctctc
    16321 tacttggcgt gtttgtcgga atgctactac accagttacc tgtcattttc ttcttcctta
    16381 ctacaatggg gattagttca ggagctagcg gacctaagtt taatgctaag tttgtcaatt
    16441 ctatgccaga ggagcaatta gcgaccatcg gcggagcggt atcaacctat tttatgctag
    16501 gtcaagcctt tactcgacta ttggtttcgg gattggtctt ggtgctaaca gtcgatcaga
    16561 ttagcggact tttcctaacg acaactggtt tgttagtcct ctatgtcctc tactggctgg
    16621 cacgcaacca aaaaacacct caaaatcagt ctgtttagac tgatttttct gttatctggg
    16681 ggtgttctat gctataatgt tcttgattga aattttacag gagagaaaca tgactaaacc
    16741 aattcgtgtg cgttacgcac caagtccaac gggacttttg catatcggaa atgctcgtac
    16801 agcattgttt aactatcttt ttgcccgtca tcacggcggt actttcctta ttcgtatcga
    16861 ggacacagac cgcaagcgcc atgtggaaga cggcgagcgt tctcagcttg aaaacctgcg
    16921 ttggttgggg attgactggg atgagagtcc agaaactcat gagcaatacc gtcagtctga
    16981 gcgtttggat atttaccaaa agtatgttga tcagctcttg gcagaaggca aggcctacaa
    17041 gtcttatgtg accgaagaag agttggcggc ggagcgtgag cgtcaggaag ctgcgggtga
    17101 aactcctcgc tacatcaacg aataccttgg tatgtctgaa gatgaaaaag cggcctacat
    17161 cgcagagcgt gaggcggctg gcattgtccc aacggttcgc ttggctgtca acgaaacagg
    17221 tatctacaag tggaatgaca tggttaaggg cgaaatcgag ttcgaaggtg gcaacatcgg
    17281 tggtgactgg gttatccaga aacgtgacgg ctatccaact tacaactttg ccgtggtggt
    17341 ggacgattat ctcatgaaaa tctcgcacgt tatccgtggg gacgaccaca ttgccaatac
    17401 acccaagcag ctcatggtct acgaagcact tggttgggaa gcaccagaat ttggtcacat
    17461 gacgcttatt atcaattctg aaactggtaa aaaactgtct aaacgtgata ctaacaccct
    17521 tcagttcata gaagattacc gtcgtaaagg ttacatgcct gaagctgttt tcaactttat
    17581 cggtcttttg ggttggaacc cgggtggcga ggaagaaatc ttctcccgtg agcaatttat
    17641 ccaactcttt gacgagaacc gcctcagcaa atcgccagct gcctttgacc agaagaaaat
    17701 ggactggatg agcaatgagt acatcaaaaa tgctgattta gaaactattt tcaaccttgc
    17761 taagccattc ttggaagaag cggggcgttt gacagacaaa gcagaaaaat tggtggaact
    17821 ttacaagcca caactgtcat ctgcggatga aatcgttggt ttgacagacc tcttcttctc
    17881 agatttccca gaattgactg cggaagaaaa agaagtgatg gcaggcgaaa cagtaccgac
    17941 tgttctcaat gccctcaagg aaaaattgga agccatgacg gacgaagatt tccaaccaga
    18001 taacatcttc ccgcaaatca aggctgtcca aaaagaaaca ggcatcaagg gcaaaaacct
    18061 cttcatgcca atccgtatcg ccgtttcagg cgaaatgcat ggaccagagt tgccaaatac
    18121 catttacctg ctcggccgtg aaaaatctat ccagcatatt gataatatgt tgaaatcttt
    18181 gtaagacaag taatccccgc tgtcctgtga cagcggggat tttgctataa ctgataacta
    18241 taacagttgt attgaaaacg gtataacgat tttttgcaaa actgtgttat cataaataaa
    18301 tcattactat ttaggagagt ttatggaaaa tcataatttt gaaaatcaag ggacctttaa
    18361 tcgagagatg aacagtcgtc atttgcagat gttgtccatc ggcggggtta ttgggacagg
    18421 attgtttttg agttcaggct ataccattgc acaggtagga ccatttggag ctgttgcagc
    18481 ctatcttttc ggagctgtca tggtctattt ggttatgttt tctttgggtg agctttcggt
    18541 agccatgcca gtcacaggtt cttttcatac ctatgcgacc aagtttatca gtcctggaac
    18601 aggatttatg gtggcctgga tgtattggct ttgttgggta gtcgctctag cttctcagtt
    18661 cgttggagca gcacagctta tgcaacgctg gtttcctagt gtgccgattt ggatttttgc
    18721 gacgattttt gcagttattg tctttgggct aaatactctt tctgttggtt ggtttgccaa
    18781 ggcggaggat gcactctcgt ctatcaaggt ctatgccatt gcagccttta tcgtactcgg
    18841 aaccttagct atttttggta ttttgccatt tgaggggacc aatgctgcgc tgctatttaa
    18901 caatatcaca agtaacggct tacttcctaa cggtctggtt ggttttatca cggtcatgtt
    18961 gtccgttaac tatgcctttt caggtgtaga aatgatcgga attgccgctg gagagactga
    19021 caatcctaag aaagccgtgc cacaagccat caagtcaaca atcggtctct tggtcatctt
    19081 cttcgtcttg accattgtag tcttggcagc cctacttcct atgtcagaag caggtgtgac
    19141 agaagcgcca ttcgtacttg tattggataa aatcggtttt ccttacgctg cagatattat
    19201 gaactttatc atcttgacag ctattttatc ggcctctaca tcagggctat acgcttcaag
    19261 ccgtatgctt tggtccttgg caaatgaagg catgattagc aaggaattgg taaaaattaa
    19321 taaacacggt gttccaatgc gtggcatgat tttgtccatg attggtgtag tcatcgcctt
    19381 gattgcgtca atttatgcag aagatacaat cttcctggcc ctggtttcta tcgctggttt
    19441 tgcggttgtc attgcttggt tggccattcc attggcacaa atcggcttcc gtcgtgaatt
    19501 tttgaaaact catagtgaag atgaactgga atacaagacg ccgttctcac cgaccttgcc
    19561 atggattacg gttattctgc tagttatttc catcatcgga attggctggg atccttcaca
    19621 gcgtgccggt ctttacttcg gtgttccttt catgattggg tgctatattt atcattacat
    19681 tcgctttaaa aagtggtagg agggttcaag tatggggcgt tttaaagaac tactagaaca
    19741 aaaggaatat atcattttgc acggtgctct tggaacagag ttggagtttc gagggtatga
    19801 tgtatcgggt aagctttggt ctgctaaata tcttttggaa aatccccagt acatcaagga
    19861 tattcacaag gattatattc gtgccggggc agacttggtg acaacctcca cctatcaggc
    19921 aacctttgaa ggattagcag aagttggctt gtcacaagca gaggcagagg acctcatttg
    19981 cttgaccgtt gatttggcga aagaagcgcg tgatgaggtc tgggcagaat tgtctgaagc
    20041 tgaaaaagca caacgaacct atcctcttat ttcaggcgat gtcggtccct acgcagccta
    20101 tttggccaac ggtgctgaat atacaggcga ttatggcaac attagtctgt cagaattaaa
    20161 agacttccac cgccgcagaa ttgaactcct cttagaacag ggggctgaac tcttaggctt
    20221 ggaaaccatc ccaaatgttc ttgaagcaca agccttagta gagttgctgg cagaggattt
    20281 tccagaggct gaagcctata tcagcttcac atcacaggac gggcagtcga tttctgacgg
    20341 aaactctatt gaaaaaatag cagagctgat caacagcagt gagcagattt tggcggttgg
    20401 tcttaactgt acagcaccgt ctctttaccc agcctttctc agtcagttga gagaaaaaac
    20461 ggataaacca tttgtgactt atccaaactc tggagaagtc tatgatggtg ccactcaaac
    20521 ttggaaggaa aaagcagacg acagccattc ccttctggac aacacacttg aatggcacga
    20581 actgggtgcc aaggtagttg gaggctgctg tcgtactcga ccagccgata ttgctgacct
    20641 agttgcaggt ttgaaataaa agtatccccg ctgtcctgtg atagcgggga tttgtctgtt
    20701 aggggaattt agctttctaa aaacagcctc tccacatagt ctttctgact tggaatgact
    20761 agctctgttt ccaggaaatc tttcaacttt tcttgtggga cccagatgta gttgctggtt
    20821 tcattggctt ggagttggat agcagctttg tcccagtcgg tttcagccca gtagcagtgg
    20881 aaaatgcact ggtcatcatg ggcgacaaag tgtgtatggt ggcggagttg gtcaactgtc
    20941 agctcaatgc ctgtctcttc gcggacttcg cgtaatatgg cctgctctgc tatttcccca
    21001 aacaaagctg aacctcctgc tgtcgcttca taatagttag ggtaggaggg tttggtgctg
    21061 tcgcgtttca tgaagagggt actgccgtcg tggtggcgga tgatgcactc gacgaccagg
    21121 tggtagaggc cgtcgggaat ggattctccg cgtgtgagag tgtggtcggt cagctgaccg
    21181 tcggctgtgt aggcgttcca gatttccatt tcattctcct gtcaattttg tagttattca
    21241 gtatagcaca tctgtaagtg taaggcaaca tgttttgttt ttgtacggac aagtgttata
    21301 ctggggctac taactcaaag gagaaatcaa tgcaaactat agtcccacat ctctggtacg
    21361 atacagaggc aaaagaagcg gtggctttct atgtagaact cttcggaggc aagattgact
    21421 ggacctacac cattacggat acgccttcgg gagattcgga tttgattcag tttcaactgg
    21481 gggatatgac cttggcggct attagtgcgg gtccatactt taagctcaat gagtccatgt
    21541 ccctcatggt caatgtagcc agcaaggatg aagtgacacg tttgtaccaa gccttgtcag
    21601 aaggcggtcg tattcttatg cctttgggag aatatccctt cagcccttac tatgtctggt
    21661 tggaagaccg ctttggtctg tcttggcaac tgtcttatgc accggacttg gacaagtcct
    21721 atcagtttga catcagtctg ctcttctcac aggaacaggt tggtttggcc cagcctatgt
    21781 tggactacta caaggacaag ctccctcagg ctagtgtcgg tcaactttcc tactacggtg
    21841 aaggggaggc tgctgttgag gctgctaaac tgaattatgc agaacttctt gtcggtggac
    21901 agaaaatgat tgtcatggac cacggttacg gtggtgaagc ttcattcaac gaagccttct
    21961 cgctcatggt ctatgtagac agtcaggaag aagcagagag ctggtatgaa aaagtgtctg
    22021 ctgttccaga agcggagatt tgcggttggg ccaaggacca gtttgggatt tcttggcaga
    22081 tcgtaccgcg tattttgatg gaagcatatg atacggctag cccagaaaag gtcaaggcag
    22141 tcaatgcagc ggtgatgacc atgaaacgtt tggacattgt ggctattcaa gcattgctaa
    22201 actagcagat gataacggag actgttctgc agtttccgtt ttttggttga gaaaaggttg
    22261 atttacagga attttggtat aatggaaaaa agtgtacgaa aggaatgtgt atgaaagcaa
    22321 cagaacgacg taagaaaatc ctatcccttt tacgagaaag tctcgatccc cttgcagcta
    22381 attatctggc gaaagaattt ggagtgagtc ggcaagtaat tgttggagat gtagccttgc
    22441 ttcgtgcgga gggagaagct gtcttggcaa ctccaagagg gtacttactc caatcttctt
    22501 tgccatctac tgaaggagcc tacattcgaa agatagcttg tcaacatggt ccagaagagg
    22561 tagaaaaaga attgacaatc ttgctagagg gtggagctca aatattagat gttgaaattg
    22621 agcatcctat ttacggctta ttatcaggca agctgaatat tgcaagttta gaggatagag
    22681 atcatttttt ggatgccttg ggtcaatatc aaggtgtgtt actgagtaat ttaacagaag
    22741 gagttcatac acatacagtc tctttcccat ctgtgcaagc ctataatgaa ctttcagcag
    22801 ctttaaaaca tgcaggtatt ttactagaaa atcaataaac cttacaagtg tcttgacacc
    22861 tgtaaggttt tgttttataa tcaaaccaat agaaagagag gttcctaatg tcccaattaa
    22921 cactatcatc taaaaattca gttaagcagc tatcaattag tgcaatttta accgcatttg
    22981 ccattttaat acctttaatg atgccgatta aaattattat tggcccagca tcctatacac
    23041 ttgctagtca cattcctttg tttatagcca tgtttatttc accagctact gctatttttg
    23101 ttgctttagg ttctagttta ggctttttcc tcgccggttt tccaattgtt attgtatttc
    23161 gggcgcttac gcacctgttc ttccttacat taggtgcggt cttggtcaag cgttttccga
    23221 ttctcatgga ttctaagcgc tttttactat taggaattgg gcttaatctc ctgcatggtc
    23281 taggagaata tattgtggtg atggtgctta cttcggggca acaaacttct gctacctact
    23341 ggataacgat gcttggcttg gtgggtgttg gctcggctat tcatggattg cttgatttta
    23401 gtttagctta ttatttctgg aaaattttaa aagaacggaa aatttatcaa ccataatcag
    23461 ttatgatgag gaatatattt tagaagctgg agaatattct ctagcttttt ttggaaattt
    23521 ttctggaaat gtacgatatt tattcatttt ttaagaaaaa atgcataaat atgttgcaaa
    23581 aagtataaat atacactata atagtcacta agttttattt gctaatatat atagaaatga
    23641 gaacacttat gacaaaagaa aaattgattt tagcctattc tggtggactt gatacttccg
    23701 ttgcgattgc ttggttgaaa aaagattatg atgtgattgc ggtttgtatg gatgttggag
    23761 agggcaagga tctcgacttc atacatgata aggccttatc aatcggtgct attgagtccc
    23821 atgtattgga tgtaaaagaa gaattcgccc aagaatatgt cctaccagtc ctacaagccc
    23881 atgcctacta tgagcaaaaa tatccgctgg tatcggctct cagccgtccc ttgatttcta
    23941 aaaagttggt ggaaatggct cataagacag gagcaaccac tatcgcccac ggctgtactg
    24001 gtaagggaaa tgaccaggtg cggtttgagg tagccattgc agccctagat ccaagcttga
    24061 aagtcgtggc tcctgtccgt gaatggaagt gggctcgtga agaggaaatc atcttcgcca
    24121 aggaaaatgg tgtaccagtc ccagctgacc tagatagccc ttactcagtc gaccaaaacc
    24181 tctggggtcg tgccaatgag tgtggtgtct tggaaaatcc atggaatgaa gcgccagaag
    24241 atgcatttgg tattactact tctccagaaa atgcaccaga tactcccgag tatgtcgata
    24301 ttgagtttaa agcaggtatt cctgttgctg taaatggtga aaagttaagt cttgctaatc
    24361 tcattcaaag actcaatgtc attgctggta aacatggtgt gggtcggatt gaccacgtgg
    24421 aaaatcgttt ggttggaatc aagtcacgtg aaatttatga gtgtccaggt gctattaccc
    24481 ttctgacagc ccacaaggaa attgaagatt tgaccctggt acgggaagta tcgcatttca
    24541 aaccgattgt ttcaaatgaa ctctctaact tgatttacaa tggtttgtgg ttcaatccag
    24601 caacagatgc cttgaaggcc tatcttgctc agacccaggc agttgttaat ggcactgcaa
    24661 aagtgaaatt gtataaggga tcagccaaag tggttgctcg gaaatctcca aattcccttt
    24721 atgacgaaga tttggcaacc tataccagtg cagatacctt tgatcaagat gcagcagttg
    24781 gtttcatcaa gctttgggga ttaccaacca aggtcaatgc ggaaattcat aaaaagagct
    24841 agaaagtagg agcttatgga agcaaagaaa ttatggggag gtcgctttga agccagtctt
    24901 gaggaatggg ttgaagaatt cggagcctcc attcgctttg accaaaaatt ggccaagtat
    24961 gatattcaag gctcactggc ccatgtcaag atgctggggc aaactgggat tgtctctcaa
    25021 gctgaggctc aggtcattca agctggtctg gaagaattgc tagaggagta tgaggctggc
    25081 aagttagtgt ttgatattcg aaacgaagac attcacatga atattgaaag tctattgacg
    25141 gagaaaatag gctcagttgc aggcaaactc catacagctc gttctcgtaa cgaccaagtg
    25201 gctacggata tgcacctcta tctgaaggat acactctttc aagttgtaga caaattgacc
    25261 aacctacgtc agattttggt agaccttgca caggagcatg tggaaacaat catgcccggc
    25321 tatacccact tgcaacatgc ccagcccatt agttttgctc agcacttgtt agcctattac
    25381 aacatgttca gccgagacag tgagcgcttt gcattcaaca tgcagcatac aaatgtatcc
    25441 ccacttggtg tggcggcctt ggcagggacg acctttccga ttgaccgtca gatgacgtct
    25501 gatttgatgg gatttgccaa gccctatagt aattctcttg atgctgtgtc tgaccgtgat
    25561 tttatcttgg aatttctgtc aaatgccagt atcctcatga tgcacatgtc gcgtttgtgt
    25621 gaagaaatca tcaactggtg ttcacatgaa taccaatttg tcaccctatc cgataccttt
    25681 tcaacaggtt cttccatcat gcctcagaag aaaaatccag atatggctga gctgattcgg
    25741 gggaaaacag gtagagttta tgggaactta gttggcctac tgacagtcat gaaatccctg
    25801 cctttaacct ataataagga cttacaggaa gacaaggaag gcatgtttga cacggcagaa
    25861 acagttttga tttcaattga tattttggcg ggtatgctga aaacgatgac ggttcataag
    25921 gaaaggatgg ctcaatcgac agagaaggac ttttcaaatg ctacagagtt ggctgattat
    25981 ttggctagta aaggtccgcc cttccgccaa gcgcatgaga ttgttggaaa actggtcttg
    26041 gagtgtagca aggcaggaca ctatctccag gatgtatcat ttgagaccta tcaggctatt
    26101 tcgcctctta ttcaagcaga tatttatgat gccttgtcct ccaaagttgc tgttagtcgt
    26161 agaaattccc ttggcgggac aggttttgaa tcgattgcag accagttgaa aagtgccaaa
    26221 gaggaaattc agaacgcaaa aagcctataa acggtatgtt tattggcttt tttgaatttt
    26281 gtggtataat agaagtaatt ttgaaagatg gagtggcagt ttgaaaaaaa gctatcgtgt
    26341 caagcgtgaa cgagatttta atgacatttt tacaaaagga aacaatgtcg ccaatcggag
    26401 gtttgttgtc taccgattac ctaaagagca aaagcatttc cgagtaggtt tatctgtcag
    26461 caaaaaattg ggaaacgctg tcatgcgaaa taagattaag cgcaggattc gtcacatctt
    26521 aattgaatgc caacatcaac tggtagcaga tgactttgtt atcattgctc gaaaaggtgt
    26581 agaggaattg tcctatcaag aaatgaagca aaacctcatc catgttttga aactagctaa
    26641 actataccag gaaggtgttg tgattgaaaa agaaagttaa atgggcaggt ctactggtag
    26701 catctctaat tgttttaaca gcctgcggaa cagggccagt gaccagtcaa tctacagatg
    26761 cgtgggatag attaatttac tggtttgcca gcattattca gttcctatct atcaacggtc
    26821 aaattggaat cggtattata ctttttacca ttttaattcg aacccttctg ttgccgttgt
    26881 tccaaataca gatgaattcc tcacggaaga tgcaggagct tcaacctcag ctgaaaaagt
    26941 tgcaagcgga gtatccagga acggatatgg aaagtcgcca gcagctttat gaagcaacgc
    27001 aagctctcta caaagagaat ggcgtcagca tgagagcgtc catgattccg ctctttattc
    27061 aaatgccaat ccttttggcc ctctttcaag ctctgacacg tgttgaagcc ttgaaagtag
    27121 gtcacttcct ttggttaaat cttggggagc cggatccgtt ctttattttg ccgattctag
    27181 ctgcagtgtt tacattcctc agctcatggt tgaccaataa atcagcaatt gagaagaata
    27241 tggctatgac aattatgacc tatgtcatgc ccgtgatgat ctttttcttt gctgtggcag
    27301 ctgctagtgg ggtggctttg tattggacag tgtcaaatgc ctatcaggtt gctcaaacct
    27361 tggtgttcaa taatccgttt aaaataatag cagagcgtca agcgaaaatt gatgctgaaa
    27421 aagagcgtca ggcaaaaatc cgacgggcac agaaaaaagc acagaaaaag aaataggaaa
    27481 actaggagag agaagatgaa atttacagga gcaagtgttg aagaggccat ccagaatggc
    27541 ttggtagagc tgaatattcc tcgaaaaaaa gcacatatta ctgtggttgc gcgtgagaaa
    27601 aaaggtttcc ttggtttcgg taaaaagcca gcgattgtgg atattgatgt catcaatgaa
    27661 acaacggttg ttaaggctaa tcagaaagca gttcgtggcg ttccaagtga aattaatgac
    27721 ctcaatgaac cagtaaaaag cgtttcagag gctacgattg acctaggaaa agttgttgca
    27781 gcggtgaaag aatttgaaaa gtctggtcaa acgcttgatg atgatattaa agcgcagatc
    27841 ttgaaaaatg aaaaagaagc gacaacgatt ttggaagaaa caggtcggat tgaaattctt
    27901 tcagaggatt tactaactac tacagatgca acaacatctg ctaaggaaga cgtaaatcaa
    27961 gaagtcatct cagaaaatca agcagataat tttgctgatt tagatattaa gattgagccc
    28021 cagtatgata ttgaacaagt tgtttcggaa gtgacagctt atgtacaaga aattctggat
    28081 gatatggatg ttgaggcgcg tattgataca agtcataatc gccgtacaat caatattcaa
    28141 gtggatacca atgaaccagg tcgtgttatc ggttatcacg gaaaagtctt aaaggctttg
    28201 caacttttgg ctcagaactt cttatacaac cgttatgagc gtaatttcta tattacaatc
    28261 aatgtgaatg attatgtaga acaccgcgca gaggttcttc aaggctacgc acaaaaattg
    28321 gcagaacgtg ttttggcaga gcaggaagcc taccatacag atccgatgtc aagtagcgaa
    28381 cgtaaaatta tccaccgcat tatctctaaa atggatggtt tgacaagcta ttcagaaggt
    28441 agcgagccga accgctatgt cgttgtagat attgaaggaa atcatgat
//
LOCUS       DASFRC010000007        27888 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.007, whole genome shotgun sequence.
ACCESSION   DASFRC010000007 DASFRC010000000
VERSION     DASFRC010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 27888)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27888)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27888
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.007"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(284..679)
                     /locus_tag="U1087_000235"
     CDS             complement(284..679)
                     /locus_tag="U1087_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000282448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEM4754760.1"
                     /translation="MYNKVILIGRLTAQPELTQTPTGKNLTRVTVAVNRRFKTENGER
                     EADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTRKYEKDGSNHYVTEILGQSFQLL
                     ESRAQRAMRENNTGDDLADLVLEEEELPF"
     gene            734..1513
                     /locus_tag="U1087_000236"
     CDS             734..1513
                     /locus_tag="U1087_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2785 domain-containing protein"
                     /protein_id="HEM4754761.1"
                     /translation="MKEFLMEKIQTSQPYSNAELDWLLENIGHPDPTIRDELVYASFC
                     HIFLEGLITREQAQSLLQFSQETKPFSLEGSTQKRSFICLLYCLLLSVDNEPESIYHA
                     FLSTNDRELLFQQALNYLTIEHDWSGYDEKLGWIHTAAHGADFLLTASCHDQFPAEKS
                     KEVWQTIVTCLTKQSKVFSAGEEIRLAQIPVYLLLNEKVTSKELTEWISKLDFPNQEP
                     VDYFRWLNLQHFLSSLYFQLRSHQASTEEIEQAIEGKIEPA"
     gene            complement(1547..2170)
                     /locus_tag="U1087_000237"
     CDS             complement(1547..2170)
                     /locus_tag="U1087_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011284429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4479 and tRNA-binding domain-containing
                     protein"
                     /protein_id="HEM4754762.1"
                     /translation="MIFTYNKEHVGDVLMVIVAEDKGQPVQFERKGQVARVFLEETGK
                     TVAWNIFEASSLVELAGNGQVFMTDEQVATLNAELAKEGFTESLVNDNSPKFVVGQIV
                     ELVPHPDSYHLNICQVNVGDKTVQIVAGAPNAAQGLKTIVALPGAMMPSGSLIFPGKL
                     RGEDSFGMMCSPRELALPNAPQVRGIIELDDSAVVGEALDPAKHWKG"
     gene            complement(2189..3145)
                     /locus_tag="U1087_000238"
     CDS             complement(2189..3145)
                     /locus_tag="U1087_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1002 domain-containing protein"
                     /protein_id="HEM4754763.1"
                     /translation="MKKSLGKILLAPVVLGLSLSLAPLVQAEIQTDVINEKWGKPTLV
                     YGGGLSDAQATEVNNLFGISDVNNVSRQVVVGTDIDQYLGTSEADTASLYSSVLVQKQ
                     DAGKGVVVDIKTPQNITLITETQYANAAITAGATDVLIDVAAPIQVTGESALTGVYKA
                     LAANGDTVDTARTEVAQQELTTVNEVATAHAGDEQFDSSALDKAVAEIKTALADYKKS
                     NGQVASEADINTIINDVLTQNGLENVITADEISKLVTFAKAYQETSAIDSAEVAAQLN
                     QFKQQAEQQISEAYKNLQDSGILEKIGAFFENLWKGLTGLFA"
     gene            complement(3190..3510)
                     /locus_tag="U1087_000239"
     CDS             complement(3190..3510)
                     /locus_tag="U1087_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEM4754764.1"
                     /translation="MIFPTNLEEVAALIEDGKPTVFLFVTTWCGDCHYIKPHVPAIEE
                     AFPDLRFVQLDRDDFMPLAQEWAILGIPSLVVLENGQEIGRFVDKNRKTKEEIMNFLS
                     GLGR"
     gene            complement(3507..3791)
                     /locus_tag="U1087_000240"
     CDS             complement(3507..3791)
                     /locus_tag="U1087_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4651 domain-containing protein"
                     /protein_id="HEM4754765.1"
                     /translation="MKKKKTALLAGLLGAGVLTASAQFYRKIQEDRKKAQALQEVRDF
                     FADLGEIATVYVDETASTQTTLIGGVVMEAGQVFLFENTKGSIQYREEER"
     gene            3938..4999
                     /gene="pepA"
                     /locus_tag="U1087_000241"
     CDS             3938..4999
                     /gene="pepA"
                     /locus_tag="U1087_000241"
                     /EC_number="3.4.11.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl aminopeptidase"
                     /protein_id="HEM4754766.1"
                     /translation="MTLFEKIKEVTELQSLPGFEGQVRNHIRQKITPHVDRIETDGLG
                     GIFGIKDTAVENAPRILVAAHMDEVGFMISQIKPDGTFRVVELGGWNPLVVSSQAFTL
                     QLQDGRTIPAISGSVPPHLSRGANASGMPAVADIIFDAGFANYDEAWAFGVRPGDVLI
                     PKNETILTANGKNVISKAWDNRFGVLMVTELLESLSGQALPNQLIAGANVQEEVGLRG
                     AHASTTKFNPDIFLAVDCSPAGDIYGDQGKIGDGTLLRFYDPGHIMLKNMKDFLLTTA
                     EEAGVKFQYYCGKGGTDAGAAHLKNHGVPSTTIGVCARYIHSHQTLYSMDDFLEAQAF
                     LQAIVKKLDRSTVDLIKNY"
     gene            complement(5044..6300)
                     /locus_tag="U1087_000242"
     CDS             complement(5044..6300)
                     /locus_tag="U1087_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HEM4754767.1"
                     /translation="MNYLEMRQWLSSRPASDLEHGVARVNWILERLDNPQLQVSTIHF
                     VGTNGKGSTLNALQSILQASGYIVGCFTSPSIIDFREQIVYQQEMISEEDFARIVTDL
                     QPLIEDLDQTAGLDAISEFEIVVVAMFVYFAHYQRPDILLVEAGMGGLQDATNVLAPL
                     AVVCPSIGLDHQAFLGETHAAIARHKVAVLRERVPLIYATDLPEVETVFEEHACQLQS
                     PTYAVGRDILLENSRAGFAVSSPLGRVEDLRLQMQGRHQEVNAALAVTTTQLLSLDFP
                     KITKETIRQGLSQAIWPGRLELIRPNLIIDGAHNNESIAVLTQLLEEKYADRDIEILF
                     AAINTKPVDQMLSQLSQFGPVSVTTFDDFRAVQLEDYPSGYERVQTYQEWLEQADLDN
                     PQKLYLITGSLYFITYVRKYILEELV"
     gene            complement(6354..6905)
                     /locus_tag="U1087_000243"
     CDS             complement(6354..6905)
                     /locus_tag="U1087_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate family ECF transporter S component"
                     /protein_id="HEM4754768.1"
                     /translation="MEKKIPKLTVQLLAAIAVILALVMIVENYFSIRISETLQVQFTF
                     IPNTILGAIAGPVWAAVFAAISDPIFVLFSGQTVLFTWILIEAVSAFIYGWFFYRKPL
                     DTKNKADWLYVAGVVVLIQVVISFIMTPIALHFHFGTPWIVLYSSRLIKAVFEIPLRI
                     VVTMLVLPSLQKIPELAKLMGIK"
     gene            complement(7220..8407)
                     /locus_tag="U1087_000244"
     CDS             complement(7220..8407)
                     /locus_tag="U1087_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000047536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HEM4754769.1"
                     /translation="MSKTIAINAGSSSLKWQLYQMPEETVLAAGIIERIGLNDSISTV
                     KYDGKKESEVLDIPNHTVAVKILLEDLLKHNIIAAYEEITGIGHRVVAGGEIFKESAV
                     IGSKEVEQIEELSALAPLHNPAHVAAIRAFEEVLPEVLNVAVFDTAFHTTMPKHAYLY
                     PIPQKYYTDHKVRKYGAHGTSHYYVAHEAAKVLGRPIEELKLITAHIGNGVSITANYH
                     GQSVDTSMGFTPLAGPMMGTRSGDIDPAIIPYLIANVDELKDAADVVNMLNKQSGLLG
                     VSGYSSDMRDIESGLEAKNPDAVLAYNIFIDRIKKFIGQYLAVLNGADAIVFTAGMGE
                     NAPLMRNDVAEGLSWFGIELDPEKNVFGNYGDISTAESKVRVLVIPTDEELVIAREVE
                     RLK"
     gene            complement(8458..9411)
                     /locus_tag="U1087_000245"
     CDS             complement(8458..9411)
                     /locus_tag="U1087_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM4754770.1"
                     /translation="MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVANQH
                     ETDLVVNNNQTLKQLDLTKEEWRRAYQFLLIKANQTEPMQYNHQFTPDSIGFILSFLV
                     DQLVPTQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASMADVMQAE
                     ISFAQGDAVRPQILKESQIILADLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSL
                     KYLEKDGFAILLAPNDLLTSPQSDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFV
                     LQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI"
     gene            complement(9468..9995)
                     /locus_tag="U1087_000246"
     CDS             complement(9468..9995)
                     /locus_tag="U1087_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComGG"
                     /protein_id="HEM4754771.1"
                     /translation="MLLKKKVKAGILLYALLMLAVFSLLLQFYLHRQEAESRLVQVAR
                     QETTAYIMAQMVLDKVEEELQEREAIAKKVASQTDEMKEDKETASETANIKEEGEVQE
                     TTSTKPEPTTKSVDTSSTQNVESKPIEDKGAVTFQEGQARYQLKGDQLLVTVELTSDG
                     LYTYQFPLGLSSEGG"
     gene            complement(9973..10407)
                     /locus_tag="U1087_000247"
     CDS             complement(9973..10407)
                     /locus_tag="U1087_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEM4754772.1"
                     /translation="MLKSKIPAFTLLECLVALVILSGSLLVFEGLSKLLIQEAHYQRQ
                     SVQKEWLVFSSQLRSEWDRSELVKVENGKVYVDKGGQALAFGKSRSDDFRKTNDRGQG
                     YQPMLYQVDSASISQENQLVRIDFSFKNGEERTFIHAFKEKS"
     gene            complement(10394..10687)
                     /locus_tag="U1087_000248"
     CDS             complement(10394..10687)
                     /locus_tag="U1087_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002282213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Type II secretory pathway, pseudopilin PulG"
                     /protein_id="HEM4754773.1"
                     /translation="MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQAW
                     ELEQQEVLNLAQMAVQTEQDNLALNGVTVQVKRTADRVAVFHEGKEVLSVVKK"
     gene            complement(10659..11066)
                     /locus_tag="U1087_000249"
     CDS             complement(10659..11066)
                     /locus_tag="U1087_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HEM4754774.1"
                     /translation="MLRRKNKAFTLFESLLTLFVVSFLAVSLSGTVQTVFRSVQEEIF
                     LWEFEAIYKDSQKLAASSHQSVSLTIGEQEVANGRQAVQVPRNVEVLEGKTITFEEDG
                     GNSSLTKIRFRLSRKTVTYQLYIGSGRYKKTEE"
     gene            complement(11047..11328)
                     /locus_tag="U1087_000250"
     CDS             complement(11047..11328)
                     /locus_tag="U1087_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEM4754775.1"
                     /translation="MKKLVEMKVKGFTLVEMLVVLGIISLLLLLFVPNLSQQKDAIQK
                     KGDAAVVKVVESQMELYELEHDEEATVADLQAKGYITEKQAKQYATAKK"
     gene            complement(11330..12295)
                     /locus_tag="U1087_000251"
     CDS             complement(11330..12295)
                     /locus_tag="U1087_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEM4754776.1"
                     /translation="MARQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADPYTQVLSD
                     GLLAGKPFSSLLADLRFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEV
                     ATYPVILLGFLLLIMLGLKNYLLPQLEEGNAATVLINHLPTIFLSLSGLSLVAVLAGM
                     VWFRKTNKIKVFSCLAALPFFGKLIQTYLTAYYAREWGSLIGQGLDLPQIVGLMQEQQ
                     SQLFREIGQDLEQSLSNGQSFHEHIKTYAFFKRELSLIVEYGQVKSKLGSELTVYAAE
                     CWEDFFSRVNRAMQLIQPLVFLFVALMVVLIYAAMLLPIYQNMEL"
     gene            complement(12279..13229)
                     /gene="tadA"
                     /locus_tag="U1087_000252"
     CDS             complement(12279..13229)
                     /gene="tadA"
                     /locus_tag="U1087_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp pilus assembly complex ATPase component
                     TadA"
                     /protein_id="HEM4754777.1"
                     /translation="MIQEKARKLIEEAVADRVSDIYLVPRGQDYQVYHRIMDEREFVQ
                     DLAEEEVTAIISHFKFLAGLNVGEKRRSQQGSCDYDYGSGEISLRLSTVGDYRGKESL
                     VIRLLYDNDKELKFWFEAAERLAEEIKGRGLYLFSGPVGSGKTTLMYHLARLKFPDKQ
                     ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVI
                     RASLTGATVFSTVHARSISGVYARMLELGVSPEELNNALQGIAYQRLIGGGGVVDFAK
                     GNYQNHSADQWNEQIDRLFAAGHISLRQAETEKIALGSPA"
     gene            13315..14265
                     /locus_tag="U1087_000253"
     CDS             13315..14265
                     /locus_tag="U1087_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LD-carboxypeptidase"
                     /protein_id="HEM4754778.1"
                     /translation="MKKLKKGDHIRVVSPSSSIERIGGFEANLAAKEKLEDLGFKLSF
                     SEHYFENDMFYSAPIAGRVADLEAAFADESVDAILTTIGGFNCNELLPYLNFDLIAQN
                     PKIFCGYSDTTALLNAIYAKTGMQTYMGPSYSSFKMREGQDYQTQAWLKAVTQDSFDL
                     TPSPEWSSDAWYLPDAPRTFYPTEWKVYNPGQASGIAIGGNISTLNLLTGTEFAPRPD
                     EYILFLEEAEDDDYLIIARHLTALLQAYPNPQALVFGRFPKETKMTEEILLAILDKHP
                     ILKTIPVLYDLDFSHTQPLFTITIGGQVELDTKAFSIRFS"
     gene            complement(14300..14665)
                     /locus_tag="U1087_000254"
     CDS             complement(14300..14665)
                     /locus_tag="U1087_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1033 family protein"
                     /protein_id="HEM4754779.1"
                     /translation="MYQVIKMYGDFEPWWFLDGWEEDVTSRAAFDRYEDALNAFQKEW
                     VRLSEDFPMKKSKNGTMVAFWDESDQHWCEECDEYLQRYHSLMLVEARENLPAGFIKQ
                     PTQPRVRPCKLKQNNCVNE"
     gene            complement(14814..18461)
                     /gene="rpoC"
                     /locus_tag="U1087_000255"
     CDS             complement(14814..18461)
                     /gene="rpoC"
                     /locus_tag="U1087_000255"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HEM4754780.1"
                     /translation="MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPERD
                     GLFDEVIFGPTKDWECSCGKYKRIRYKGITCDRCGVEVTRAKVRRERMGHIELKAPIS
                     HIWYFKGIPSRMGLTLDMSPRALEEVIYFAAYVVIDPKDTPLEHKSIMTEREYRERLR
                     EYGYGSFVAKMGAEAIQDLLKQVDLPKEIAALKEELKTASGQKRIKAVRRLDVLDAFY
                     KSGNKPEWMILNILPVIPPDLRPMVQLDGGRFAASDLNELYRRVINRNNRLARLLELN
                     APGIIVQNEKRMLQEAVDALIDNGRRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLG
                     KRVDFSGRSVIAVGPTLKMYQCGVPREMAIELFKPFVMREIVARDIAGNVKAAKRLIE
                     RGDDRIWDILEEVIKEHPVLLNRAPTLHRLGIQAFEPVLIDGKALRLHPLVCEAYNAD
                     FDGDQMAIHVPLSEEAQAEARILMLAAEHILNPKDGKPVVTPSQDMVLGNYYLTMEDA
                     GREGEGMVFKDADEAVMAYRNGYVHLHTRVGIATDSLDKPWKDNQKHKVMMTTVGKIL
                     FNAIMPEGLPYLQEPNNANLTEGTPDKYFLEPGSDIKAAIAELPINPPFKKKNLGNII
                     AEIFKRFRTTETSALLDRLKDLGYYHSTLAGLTVGIADIPVIDNKAEIIEESHERVEQ
                     IKKQFRRGMITDDERYAAVTDEWRSAKEKLEKRLVEKQDPKNPIVMMMDSGARGNISN
                     FSQLAGMRGLMSAPNGRIMELPILSNFREGLSVLEMFFSTHGARKGMTDTALKTADSG
                     YLTRRLVDVAQDVIIREDDCGTDRGLDIRSITDGKEMIEPLEERLQGRYTKKTVKHPE
                     TGAVIIGPNQLITEDIAREIVNAGVEQVTIRSVFTCNTRHGVCRHCYGINLATGDAVE
                     VGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNSDITQGLPRVQEIFEARNPKGEAVI
                     TEVKGEVIAIEEDASTRTKKVFVKGKTGEGEYVVPFTARMKVEVGDQVARGAALTEGS
                     IQPKRLLEVRDVLAVETYLLSEVQKVYRSQGVEIGDKHIEVMVRQMLRKVRVMDPGDT
                     DLLMGTLMDITDFTDANAEVVIAGGIPATARPVLMGITKASLETNSFLSAASFQETTR
                     VLTDAAIRGKRDNLLGLKENVIIGKIIPAGTGMARYRNLEPQAINEVEIIEDTVAEEL
                     TAEAELEAVTE"
     gene            complement(18639..22211)
                     /gene="rpoB"
                     /locus_tag="U1087_000256"
     CDS             complement(18639..22211)
                     /gene="rpoB"
                     /locus_tag="U1087_000256"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEM4754781.1"
                     /translation="MAGHEVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFLDYG
                     LKEVFEDVLPVSNFTDTMELEFVGYELKEPKYTLEEARAHDANYSAPIYVTFRLVNKE
                     TGEIKTQEVFFGEFPIMTEMGTFIINGAERIIVSQLVRSPGVYFNDKVDKNGKVGYGS
                     TVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR
                     NTIEKDIHKNPADSRTDEALKEIYERLRPGEPKTAESSRSLLTARFFDPRRYDLAPVG
                     RYKINKKLNLRTRLLNQTLAEHVINGETGEIVLEAGTVLSRDVLESIENQFDELNQVE
                     YIPNDAAVVVEPVLLQKFKIVAPTDPDRVVTVIGNANPAENVRTVTPADILTEMSYFL
                     NLAEGLGRVDDIDHLGNRRIRAVGELLANQVRIGLTRMERNLRERMSVQDNEVLTPQQ
                     IINIRPVTAAIKEFFGSSQLSQFMDQHNPLSELSHKRRLSALGPGGLTRDRAGYEVRD
                     VHYTHYGRMCPIETPEGPNIGLINNLSSYGHLNKYGFIQTPYRKIDRATGTVTNEIVW
                     LTADEEDAYIVAQSTSPLDENNRFVDEIVMGRHQGNNQEFPAASADFMDVSPKQVVAV
                     ATACIPFLENDDSNRALMGANMQRQAVPLIDPKAPYVGTGMEYQAAHDSGAAIIAQHD
                     GKVTYSDADKVEVRREDGSLDVYHVSKFRRSNSGTAYNQRTLVKVGDIVEKGDFIADG
                     PSMENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVYTSVHLEEYESETRDTK
                     LGPEEITREIPNVGEDALRNLDEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEERLL
                     HAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRANGDELQSGVNMLVRVYIAQKRKI
                     KVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLG
                     MAARNLGIHIATPVFDGASSEDLWSTVKEAGMDSDAKTILYDGRTGEPFDNRVSVGVM
                     YMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASNVLQ
                     EILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRVLDEDDNE
                     VELRDLDEGEDDDIIHVDDLEKARAKAAADAAAAFAAEEAEGKE"
     gene            complement(22768..25191)
                     /locus_tag="U1087_000257"
     CDS             complement(22768..25191)
                     /locus_tag="U1087_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HEM4754782.1"
                     /translation="MATKSDKQDFKKKISALGLGDVVGVFLRTLKLLFNSVAVLVFLF
                     GLFGAGIGIGFVVSLFDDVKIPKTEELVAKVSEVSRISTVTYSDGSLVSEVNSDLLRV
                     PITSEEVSNYLKQAVIATEDETFETHNGVVPKAVLRAALGSVGLGSSSGGSTLTQQLI
                     KQQLVGDAPTFTRKANEIVSALALERNMTKEEILTIYLNVSPFGRNNQGRNIAGVEAA
                     AQGIFGKPAKDLTVPQAAFIAGLPQSPIVYSPYASDGTRKSDEDMVYGIERYQDVLFN
                     MYRASFLTKEEYETYKAYDIKQDFIAPAPVMADTKDYLYYKVMEEAQEVMFDYLVKRD
                     KVSKNDLKNDETKASYEELAKQELSQGGYTIKSTVDQKIYAAMQSVVANYGSVLDDGN
                     EYVETGSVLIDNATGAILGFVGGRDYATNQNNHAFDTLRSPASTIKPLLAYGIAIDQG
                     LIGSASILSDYPTNFSSGQPIMYGSGRGTGMMNLQTAIDRSVNIPAFWTYKMMRNAGV
                     DAKAYMDKMNYHIPMYNIESVPLGGGVEISVLTNTNAYQTLANGGVYNKHYIVESITA
                     SDGTVVYQHKAAPVQVYSKATASIMNQLLRQVVNSGYTTTFKSRLSGLNPQAASSDFV
                     GKTGTSNEVNDVWLMLSTPRVTLGTWAGNDDNSEMYVWTGYHNNSQYVAHMVDALYNV
                     NADMFAGKFELDSSVIASSVVASTGQRAGTTQVNGRQVTVGGAMTTSYWAKNGAPVTS
                     YNFMVGGTDSDRAQAWNTIIGSQTPTSSSSTQRSSSTRSSTASSANNTTQSSETQTAT
                     SEQANNDSP"
     gene            25345..26601
                     /locus_tag="U1087_000258"
     CDS             25345..26601
                     /locus_tag="U1087_000258"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011184085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HEM4754783.1"
                     /translation="MNIFEELKARGLVFQTTDEEALVKALTEGQVSYYTGYDPTADSL
                     HLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKDTVDGWVTKIQ
                     GQLSRFLDFENGDNKAEMVNNYDWFSDISFIDFLRDVGKYYTVNYMMSKDSVKKRIET
                     GISYTEFAYQIMQGYDFYELNDKHNVTLQIGGSDQWGNMTAGTELLRRKADKSGHVMT
                     VPLITDSTGKKFGKSEGNAVWLDADKTSPYEMYQFWLNVMDDDAVRFLKIFTFLSLDE
                     IAEIEKQFDAARHERLAQKILAREVVTLVHGEEAYNQALNITEQLFAGNIKNLSAKEL
                     KQGLSNVPNYAVQAEDNLNIVELLVTSGIVNSKRQAREDVQNGAIYVNGERVQDLDYT
                     LSDSDKIDGELTVIRRGKKKYSVLTY"
     gene            26605..27387
                     /locus_tag="U1087_000259"
     CDS             26605..27387
                     /locus_tag="U1087_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1211 domain-containing protein"
                     /protein_id="HEM4754784.1"
                     /translation="MKNTKQNPKNQEFLNDYFEQMAQEASLLHPELEHLSADEHQAFL
                     DQLYREDETRRAKRLKEHLEVFSDAVIGVIITMMLLEIPLPSDTVDTHHFFTGILIFF
                     VSFFIVADFWYDNHKILGQIEHATSKILIVQFNFMATLALIPLFTRWMMEGITTTAVV
                     GYGVVTIAVNLCQSILNYFVLQEKFAGTTYTKRFVSMAHLRQLVTVALFNIVIILFAY
                     FNPTLAFYFYILRPIVSFLGAAFFEKKRQERKEKMAVRVNHI"
     gene            27441..27818
                     /locus_tag="U1087_000260"
     CDS             27441..27818
                     /locus_tag="U1087_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEM4754785.1"
                     /translation="MTCIFCHQLEEEDIIYQTEHFKVVWDIDPVQTGHLLIISKKHYD
                     TLSQISPIIRYELSDLEVFLTDKLCQALAIDGVTIACNDRLFDADTHFHLHLIPRFQS
                     DGFWDQISLAQVQLDLNAFLKAL"
BASE COUNT         7763 a         6677 c         5617 g         7831 t
ORIGIN      
        1 agacctgaga agaggagtct tgccttttac tcagccgcct atctactctg gctagtctgg
       61 atatttttct ttagccaccc tcattacatc atctttttct tctacggagt tctcctactt
      121 tctctaatta tcatgctgat agaatggtgg agtgacagga aatagaacac aaaaaacacc
      181 aactttcgtc ggtgttttta aggagatatg aaaaatattt aggattgact atagtatagc
      241 ctatttttca atacgctcca tcggtcttgg gactgatatt gctttaaaac ggtaattcct
      301 cctcttccaa gaccaagtca gctaaatcat cgcctgtgtt attttcacgc atggcacgtt
      361 gggcacggct ttcgagcaac tggaaggatt gacctaagat ttcagtcaca tagtggttgc
      421 tgccgtcttt ttcgtattta cgggttcgca actcaccgtc aatcgaaatc agactaccct
      481 tgctaccata ggagacaagt gtttccgcca gtttgcccca gaaaataaca ttaagaaaat
      541 ctgcttcacg ctcaccattt tcagtcttaa atcggcgatt gactgcgact gttacacgag
      601 tcaaattttt accagttggt gtttgagtga gttccggttg ggccgtcaag cgaccgatta
      661 aaataacttt attatacatt ttatatcctc ctacttattt attcgtagaa ggattagaaa
      721 aggagcgaaa atcatgaaag aatttttgat ggaaaagata cagacctccc aaccatattc
      781 caatgccgaa ctggattggt tgttggaaaa catcggccat ccagacccta ctatacgcga
      841 cgaactggtc tatgctagtt tttgccatat ctttttggag ggcttgatta caagagaaca
      901 agcacagtcg ctactgcaat tctctcaaga aaccaagcca ttttccctag aaggctccac
      961 acaaaaacga agttttattt gcttacttta ctgtctgttg ctgtctgtcg ataatgagcc
     1021 agagtctatt tatcatgcat ttttaagcac taacgaccgt gaactactct tccagcaggc
     1081 cttgaattat ttgacgattg aacatgactg gtctggctac gatgaaaaac tcggttggat
     1141 ccataccgct gcccacggag ctgattttct tctgactgca agctgtcatg atcaatttcc
     1201 cgctgaaaaa agcaaagaag tctggcaaac tattgtcact tgtctaacta aacaaagtaa
     1261 agttttctca gctggcgagg aaatccgttt ggcacaaatt cctgtatatt tactactgaa
     1321 tgaaaaagta accagcaaag agttgacaga atggattagc aagctggact ttccaaatca
     1381 agaaccagta gactacttcc ggtggctcaa tctccaacat tttctgtcta gtctttactt
     1441 ccaacttagg tcacatcaag catcgaccga agaaatcgaa caggctattg aaggaaaaat
     1501 tgaaccagca taaaagaatt ggccaaagcg accaattctt ctttttctat cccttccagt
     1561 gtttagctgg atcaagtgct tctccgacta ctgcggagtc gtccaattcg ataatgccac
     1621 ggacttgtgg tgcgtttggc agagccaatt cacgcggact acacatcata ccaaagctat
     1681 cttcaccacg caatttccct gggaaaatca ggctaccgct cggcatcatt gcccccggaa
     1741 gagccacaat agttttcaat ccttgggcag catttggtgc tccagctacg atttgaacgg
     1801 ttttgtcacc aacattgacc tgacagatat tgaggtggta gctgtctgga tgcggaacca
     1861 gttccacaat ctgaccgaca acgaatttcg gactattgtc gttgactaag ctttcagtaa
     1921 aaccttcctt agccaattca gcattcaagg tcgcaacttg ctcgtctgtc atgaaaacct
     1981 gaccatttcc agcaagctca accaaacttg atgcttcaaa gatattccag gctactgttt
     2041 ttcctgtttc ctctaggaaa acacgcgcca cttgaccctt gcgttcaaac tgaacaggct
     2101 gacccttgtc ttcagccaca atcaccataa gaacatcgcc gacgtgttcc ttattatatg
     2161 taaaaatcat ttctttttca tttctccttt atgcaaatag accggtcaag cctttccaaa
     2221 gattttcaaa gaaggcaccg attttttcta aaatccctga atcttgtaga ttcttatagg
     2281 cttctgaaat ttgttgctcc gcctgttgct tgaactggtt gagttgggca gcaacctcag
     2341 ccgaatcaat agcagaggtt tcctgataag ctttggcaaa tgtgactagc ttagaaattt
     2401 catctgctgt gatgacattt tctaaaccgt tttgggtcaa aacatcattg atgatggtgt
     2461 tgatgtcagc ctcagaagcc acctgaccat tggacttttt gtagtcggca agagcagtct
     2521 tgatttccgc cactgcctta tccaaagcag agctgtcaaa ttgttcatca ccagcatggg
     2581 ctgtcgctac ttcattaaca gttgttaatt cttgttgagc tacttcagtt cgagcggtat
     2641 caactgtgtc accattggct gcaagagcct tgtaaacacc tgtcagagcg gactctcccg
     2701 tcacctgaat gggtgccgca acgtcaatca agacatctgt cgcaccagct gtaatagccg
     2761 cattggcata ctgcgtttcg gtaatcaagg tgatgttctg tggcgtctta atatccacca
     2821 caaccccttt gccagcgtcc tgcttttgca ccaagacaga tgaatagagg gaggctgtgt
     2881 ccgcttcaga tgtacctaaa tattggtcta tatccgtacc aacaaccacc tgacgactga
     2941 cattattgac atccgaaata ccaaatagat tgttaacctc tgtcgcctgc gcatctgaca
     3001 aacctccacc gtagactagt gttggcttgc cccatttttc attgataaca tctgtttgaa
     3061 tctcagcctg caccaaggga gcaagactca aactcaaccc cagcaccaca ggtgctagaa
     3121 ggatttttcc tagtgatttc ttcatgttct ttcctttctt ttgggaaatg gcagagcttc
     3181 tctgctaatt tatctaccca gtccagataa gaagttcatg atttcttcct tggtcttgcg
     3241 attcttatcg acaaaacgac cgatttcctg accattttcc aaaacaacca gacttggaat
     3301 gcctaaaata gcccattcct gtgccaaagg cataaagtca tctcgatcca gttgcacaaa
     3361 acggagatct ggaaaagcct cttcgatagc cggcacatgc ggtttgatat agtggcaatc
     3421 tccacaccaa gttgtcacaa atagaaaaac agtcggcttg ccatcttcaa tcaaggcagc
     3481 tacttcttca agatttgttg gaaaaatcat ctttcttcct ccctgtattg aatagaacct
     3541 ttggtatttt caaacaaaaa tacctgtcct gcctccatca caacccctcc gataagagtg
     3601 gtctgcgtag aagccgtttc atccacatag accgtggcaa tctctcctaa atcagcgaaa
     3661 aagtcacgca cctcctgcaa ggcctgtgct tttttacggt cttcttggat tttacggtaa
     3721 aattgagcac tagcggtgag cacacctgcc cccaataagc ctgctagcaa ggctgtcttt
     3781 ttctttttca tgttgactat tttatcatat ttcccaggaa ttttcccaaa aatgccattg
     3841 gacttgtgac agctgagaag atcctgttga cataatagta ggacaagtct agctcttcgt
     3901 gataaaatag tagtaatcat gtcatggagg aagaagaatg actctttttg aaaaaattaa
     3961 agaagtaacc gaattgcaaa gtttaccagg atttgaagga caagtccgca accatatccg
     4021 ccaaaaaatc acgccacatg tggaccgcat tgaaacagat gggctaggtg gaatttttgg
     4081 tatcaaggat acggctgttg aaaatgctcc tcgtatccta gtggccgccc acatggatga
     4141 agtcggcttt atgattagcc aaatcaagcc tgacggtact ttccgtgttg ttgagctagg
     4201 tggctggaat cctctggttg tttctagcca agccttcact cttcagttgc aggacggtcg
     4261 taccattcca gctatctcag gctcagtacc acctcacctt tcacgggggg ctaacgcttc
     4321 tggcatgcct gccgttgctg atattatttt cgatgctggt tttgccaatt atgacgaagc
     4381 ttgggcgttc ggcgttcgtc caggggatgt cctcattccc aaaaatgaaa ccattctaac
     4441 agccaacgga aaaaatgtta tttctaaggc ttgggacaac cgcttcggtg tccttatggt
     4501 gacggaattg ctagaaagcc tatccggtca agctctacca aatcagttga ttgctggggc
     4561 caatgtgcaa gaagaggttg gtcttcgtgg tgctcatgcc tctacaacca agttcaatcc
     4621 agacattttc ctcgctgttg attgctcgcc cgcaggtgat atttatggcg accaaggaaa
     4681 aattggtgac ggaactctgc ttcgtttcta tgacccaggt catatcatgt taaaaaatat
     4741 gaaggatttc cttctaacta ctgctgaaga agctggtgtt aaattccaat actactgtgg
     4801 taaaggtgga acagatgccg gtgcagccca cttgaaaaat catggtgttc catcaacaac
     4861 tatcggtgtc tgcgctcgtt acatccactc ccatcaaact ctctacagca tggatgactt
     4921 cttagaagct caagccttct tgcaggctat cgttaaaaaa ctagaccgct caacggttga
     4981 tttgattaaa aattattaaa acaaaagact ttgctgggtt gaatgcccgg caaagccttt
     5041 tttctataca agttcttcta aaatgtactt cctcacatag gtaatgaaat atagcgagcc
     5101 tgtaatcagg tagagttttt ggggattgtc caagtccgcc tgctccaacc actcctgata
     5161 ggtctgaact cgttcataac ctgacggata atcttctaac tgtaccgctc tgaaatcgtc
     5221 aaatgtcgta acgctgacag gtccaaattg gctaagctgg gacaacatct ggtccactgg
     5281 cttggtattg atggctgcaa agaggatttc aatatccctg tcagcatact tttcttccaa
     5341 gagttgtgtc aggacggcga tactttcatt attgtgggca ccgtcaatta tgagattagg
     5401 cctaatcaac tctaagcggc ccggccagat ggcttgggac aagccctggc ggatggtttc
     5461 cttggtaatc tttggaaaat caaggctgag aagctgagtt gttgtcactg ccaaggctgc
     5521 attgacctcc tggtgacgcc cctgcatctg tagcctcaaa tcctcaacac ggccgagagg
     5581 acttgaaact gcaaagcctg ctctgctatt ttccaaaaga atatcccgtc ccaccgcata
     5641 ggtcggactc tgaagctgac aggcatgctc ctcaaatact gtctccactt ctggcaaatc
     5701 ggtcgcatag atgagcggaa ccctctcgcg caagacagca accttgtgac gggctatagc
     5761 agcgtgggtc tctcccaaaa aagcctgatg gtccaagccg atggacgggc aaactactgc
     5821 caagggagca aggacattgg tcgcatcctg caaaccgccc atgcctgcct ccaccaagag
     5881 aatatcggga cgctggtagt gggcaaagta gacaaacata gccactacta caatctcaaa
     5941 ctccgagatg gcatccagtc cagccgtctg gtccaagtcc tcaatcaagg gttgcaagtc
     6001 tgtcacaatc ctcgcaaaat cttcctccga aatcatctct tgctggtaga caatctgctc
     6061 tcgaaaatca atgatagacg gtgatgtaaa gcagccgacg atgtagccag aagcctgtag
     6121 gatggactgt aaggcgttga gggtcgagcc cttgccattt gtaccaacaa agtgaatagt
     6181 cgacacttga agctggggat tgtccaagcg ttccaaaatc cagttgacac gtgcaacgcc
     6241 atgttctaaa tcagaggccg ggcgactaga caaccactgc ctcatttcta aataattcat
     6301 gtttccctct ctataaaaag caacaggggg atgacctgtt gcttgatact gttttattta
     6361 atgcccatta acttggccaa ttcaggtatt ttttgtaaac ttggcaagac aagcatagtc
     6421 acgacaatgc gtaatggaat ttcaaaaact gccttaatca agcgactgct atacagaaca
     6481 atccaaggtg ttccaaaatg gaaatggagg gcaatcggtg tcatgataaa ggaaatcaca
     6541 acctgaatca agacaacaac ccctgcaaca tagagccaat cagccttgtt cttggtgtct
     6601 agcggttttc gatagaagaa ccagccatag ataaaagccg ataccgcctc aatcaaaatc
     6661 caagtgaaga ggacagtttg cccactaaac aagacaaaga tcgggtctga aatcgctgca
     6721 aagacagctg cccaaactgg accagcaata gctcccaaaa tagtattggg aataaaggta
     6781 aactggacct gcaaggtttc tgagatccga atggagaaat agttctccac aatcatgacc
     6841 aaggcaagga tcacagcaat agcagccaac aactgcaccg ttagttttgg aattttcttt
     6901 tccataaaaa atgctccttt ttcaaaatgg agctgtcgtg tatattcgac agcggatgca
     6961 atggtttacc gcgccacttt tagctaagga cttgatgttc cgactaaaac agacatcaac
     7021 cccaaccaaa agctagcttc gttatgtggc aacatcccat ccacatacac ttgacgcaaa
     7081 ccatctactc tgtgcaaatt tctttgctag tctattgtat cacacactat atattttgac
     7141 cacttgctaa aaactatacc tttctaaagg tataaactat aagagaaact ggcagtctcc
     7201 gactaccagt tagtttttct tatttcaaac gttccacttc acgcgcaata accaattctt
     7261 catccgttgg aataaccaag acacgaactt ttgattctgc cgttgaaatg tcaccatagt
     7321 tgccaaatac atttttttct ggatccaact caataccgaa ccaagacaag ccttctgcta
     7381 cgtcattgcg cataagcggt gcattttcac ccatacctgc cgtgaagaca atagcatctg
     7441 ccccatttaa aactgcaaga tactgaccga taaatttctt aatacggtca atgaaaatat
     7501 tgtaggccaa cactgcatct gggttcttag cttccaaacc tgattcaatg tcacgcatat
     7561 cacttgaata acccgataca ccaagcaaac ctgattgttt attcaacatg ttaacaacat
     7621 ccgcagcgtc cttcaactca tcaacatttg caatcaagta aggaataatc gctggatcaa
     7681 tatctcccga acgagttccc atcattggac cagctagagg agtgaagccc atagaagtgt
     7741 caactgattg accgtggtag ttggcagtaa tagatacacc gtttccgatg tgagccgtaa
     7801 tcaattttaa ttcctcaatc ggacgtccca atacttttgc tgcctcatgc gctacataat
     7861 agtgactagt tccgtgagct ccatacttac gaaccttgtg gtcggtatag tacttttgtg
     7921 gaatcggata aagataggca tgctttggca tcgtagtgtg aaaggctgta tcaaaaacag
     7981 ctacattcaa aacttctggt agtacttcct caaatgcacg aattgctgct acgtgagcag
     8041 ggttatgaag cggtgccaaa gcacttagct cttcaatttg ctcaacctct tttgatccaa
     8101 taacagctga ttctttgaaa atctctccac ctgcaacaac acggtgtccg ataccggtaa
     8161 tttcctcgta agcagcaatg atgttgtgct taagcaagtc ttctaggaga atcttaaccg
     8221 caaccgtatg attaggaata tctaaaactt cactttcttt cttcccatca tacttaactg
     8281 ttgagatgga atcgttcaaa ccgatgcgct caataatccc tgccgctagc actgtttctt
     8341 ctggcatttg ataaagttgc catttcagac ttgaactacc tgcattaatt gcaattgttt
     8401 ttgacatatc gttccccttt ttaaagcgtt ttcctaatta gtataacaga tttttactta
     8461 aattgcattc tcttgcttcc aatttttgaa attgagcatg aacttctgaa tcgcttctgg
     8521 ttcttgaaga ctttgtaagg gataaacaaa cggcgtcaac gatcttgcag ctttcttttg
     8581 caagacaaaa atagacttgg ccatagcagc cttcccaaag agatttggtg gcagggcaat
     8641 catggcaaca atattagctt gctcctgtaa ccaacctttc agcaaatcgc tttgcggact
     8701 agtcaataaa tcatttggag ccaacaaaat cgcaaagcca tctttttcca gatatttgag
     8761 ggattgttcc atgagcaaat gatgggcgta ggtatgttca tttgggctgg cgacctgata
     8821 acggctggca atctggtcat ctggatagta accaatcggc aaatccgcaa gaatgatttg
     8881 gctttccttc aaaatctgcg gacgtaccgc atcgccctgg gcaaatgaaa tctccgcctg
     8941 cataacatct gccatactag ctgacaaatc aatcaagagg tcgtccactt cgatccccaa
     9001 gtaatccaat tctttctggc tggcgttgag aatggtctga gctagattgc ctgtccccga
     9061 accaatttcc agaaccgtca ccttttgagt cggcaccaat tggtctacta gaaaagatag
     9121 gataaatccg atagagtctg gtgtgaactg gtgattgtac tgcatgggtt cagtctgatt
     9181 ggccttgatg agtaggaatt ggtaggcacg acgccattct tccttggtta aatctagttg
     9241 tttcaaggtc tgattgttat tgacaacaag gtccgtctca tgctgattag ctacgtaagc
     9301 agcattttgc tcaatcatgg catcatagat attggtacct agctggtttt ggatagtctg
     9361 tacgttttct aatagcaggt cgtaagcctg ttcgatcttc tcaaaattca tactcctatc
     9421 ttatcaaaat ttcatagact ttgcaccaaa aaggagagca agtcaactca ccctccttct
     9481 gatgatagcc ccaaaggaaa ttgataggta tacagaccat cacttgttaa ctcaactgta
     9541 accaatagtt ggtctccttt aagttgataa cgagcctgac cctcctgaaa agtgaccgct
     9601 cccttatctt ctattggttt gctttccacg ttttgagttg atgatgtgtc aactgatttt
     9661 gtagttggtt ctggcttagt gcttgttgtt tcttgtacct ccccttcttc cttaatatta
     9721 gccgtttcac tagctgtttc tttatcttcc ttcatttcat ctgtttgact tgctaccttc
     9781 ttggcaattg cttcacgctc ttgcaattcc tcttcgacct tgtccaagac catctgagcc
     9841 atgatataag cagtcgtttc ttgccttgcc acctgtacca agcgactctc agcctcttgc
     9901 cgatggagat aaaactgaag caagagacta aaaactgcca gcatcaaaag ggcatagagc
     9961 agaataccag ccttaacttt tttctttaaa agcatggata aaggtccgct cctctccgtt
    10021 tttaaagcta aagtcgatac gcaccagctg gttttcttgg gaaatggatg cgctatccac
    10081 ctgatagagc atgggctggt agccctgtcc cctgtcattt gttttccgaa aatcatccga
    10141 ccgtgactta ccaaaggcca aagcctgacc acccttatca acatagacct tgccattttc
    10201 aaccttgacc aattccgacc ggtcccactc tgaccgcaac tgactagaaa ataccagcca
    10261 ctccttttgg acagattgac gttggtaatg tgcttcttga atcaacaact ttgacaagcc
    10321 ttcaaagacc agaagacttc ctgataggat gactaaggct accaagcatt ccaggagagt
    10381 aaaagcggga attttacttt ttaacaaccg ataaaacctc cttcccctca tggaaaaccg
    10441 caaccctgtc cgccgttcgt ttcacctgaa ctgtaacacc gtttaaggct aagttatctt
    10501 gctcggtctg gacagccatc tgagctagat tgagaacctc ctgttgttcc aattcccaag
    10561 cctgtcgcct acgacctgca tccaccgctg acaaaatcaa gctgcaaatg gttaccaggg
    10621 tcgcaagggc aaccaaactt tctagcaaaa tataagcctt attcttctgt tttcttatag
    10681 cgaccactcc ctatatataa ttgatacgtg actgtctttc gactaagccg aaagcgtatc
    10741 ttggtcagag aagaatttcc accatcttct tcaaatgtga tggtcttccc ctctaatact
    10801 tctacatttc tgggtacctg aactgcctga cgaccatttg ccacttcttg ttcgccgata
    10861 gtcaagctaa ctgactggtg agaactagca gccaatttct gactgtcttt atagatggcc
    10921 tcaaattccc agagaaaaat ttcttcctga acagaccgaa agaccgtttg tactgttcct
    10981 gatagggaaa cagctaaaaa actgacaaca aacaaggtca gcaggctttc aaacagggta
    11041 aaagccttat tttttcgccg tagcatactg ttttgcttgt ttttcagtaa tataaccttt
    11101 cgcctgcaaa tctgccaccg ttgcttcctc gtcatgttcc aattcataga gctccatctg
    11161 actctccact actttgacaa cagccgcatc ccccttcttc tgaatagcat ccttctgctg
    11221 gctcaaattt ggcacaaaaa ggagcaagag caggctaatg atccccaaaa cgactaacat
    11281 ttccaccaga gtgaaccctt ttaccttcat ttcaactaat tttttcattt tacaactcca
    11341 tattttgata aatcggcagc aacatggctg cgtagatgag aacgaccatt aaggccacaa
    11401 agagaaagac cagcggttgg attagctgca tggctctatt gacccgagag aaaaaatcct
    11461 cccaacattc agccgcataa actgtcaact cgctacccaa cttggacttg acctgaccgt
    11521 actcgacaat caaactcagc tcccgcttaa aaaaggcgta ggtcttaatg tgttcgtgaa
    11581 agctctgacc attggaaagc gactgctcca ggtcctggcc aatctcccga aaaagctgcg
    11641 actgctgctc ttgcatcaag cccacaatct gcggcaggtc caagccttgc ccaatcaaac
    11701 tcccccactc cctggcgtaa taggccgtca ggtaggtttg gatgagtttt ccgaaaaatg
    11761 gcagagctgc caagcaggaa aagaccttaa ttttattggt tttgcgaaac caaaccatac
    11821 cagctaagac cgccaccaaa ctaagtccac ttagagataa aaagatggtc ggtagatgat
    11881 taatcagcac tgtcgctgca ttaccttcct ccaactgggg cagaagatag tttttcaaac
    11941 ccagcataat caagagcaga aaacctagca agataactgg ataggtcgcc acctcaatca
    12001 attttttacg aaccttgcta acattttcca gataggactg gatatggctc aaactcaggc
    12061 tggtattgcc atgaacctct gccagagcca cctgtgtgac caccgcatct gaaaaccgca
    12121 aatctgccag caaacttgaa aaaggtttgc ctgcaagaag accatcggat aaaacttgtg
    12181 tatatgggtc tgccaaaagc tgactacgct taagaaaatc gacaatctct cccagatgaa
    12241 aaccactggc aaagagatta ttaaacagtt caatgacctt acgctggcga gccaagggca
    12301 attttttctg tttctgcctg ccgaagactg atatgtcctg ctgcaaaaag gcgatcaatt
    12361 tgttcattcc actggtctgc ggaatggttt tggtaatttc cctttgcaaa atccactaca
    12421 cctcctcccc caatcaagcg ttgataggca atgccttgaa gggcattatt taactcttca
    12481 gggctgaccc ccaattccaa catacgagca tagacacctg aaatagacct tgcatgaact
    12541 gttgagaaaa cggtagctcc cgtcaggctg gccctgatga ccgcccgcgc cgtttccgca
    12601 tcccgaattt caccgatgat gagcaagtct ggccgatggc ggagggacag tttgatcaga
    12661 ttgtcgtagg tggctccgat ggcttcattg agctggagtt gcagcatatc ctcctgcttg
    12721 atctcgacag gatcctcgat agtcaaaatc tgcttgtctg ggaatttcag cctggcaaga
    12781 tggtacataa gcgtggtctt accagagccg actggacccg aaaaaaggta gagccctcgt
    12841 cccttgattt cttctgcaag tcgctcggcc gcctcaaacc agaacttaag ttccttgtca
    12901 ttgtcataga gcaggcggat aaccagactt tccttaccac gataatctcc gacagttgat
    12961 aagcgaagtg aaatctctcc gctgccataa tcataatcac aggaaccctg ctgactacgg
    13021 cgtttttcac caacatttaa tcctgctaaa aacttgaaat ggctgatgat ggctgttact
    13081 tcctcctcag ccaagtcttg cacaaactcc cgttcatcca tgatgcgatg gtagacttgg
    13141 tagtcctgac cacgaggaac cagataaatg tcactgaccc tatccgccac cgcctcttca
    13201 atcaactttc ttgctttttc ttgaatcata aaacctcctc accctatcta ttcgcaagct
    13261 gacttgattt tccatacttt tttgttaaaa taataaaaaa acttggaggt tcctatgaaa
    13321 aaattaaaaa aaggcgacca catacgcgta gtcagtcctt cttcgtctat tgaaagaatt
    13381 ggtggttttg aagccaatct tgccgccaag gaaaaattgg aagacctggg cttcaaactc
    13441 tctttctcag aacattattt tgaaaacgat atgttttact ccgctccgat cgccggtcgt
    13501 gttgcggact tggaagccgc ttttgcggat gagtcggtcg atgccattct gacaaccatt
    13561 ggcggtttca actgtaacga actgctgcct tatctgaatt ttgatttgat tgcacaaaat
    13621 ccgaagattt tctgcggtta ttcggacaca actgccctgc tcaatgccat ctatgccaaa
    13681 acaggtatgc agacttacat gggaccatcc tatagcagct ttaagatgcg tgagggacaa
    13741 gattaccaga cccaggcttg gctcaaggct gtgacacaag actcctttga cttgaccccg
    13801 agtccagaat ggtctagcga cgcttggtat ctaccagacg cccctcgcac cttttaccca
    13861 acagaatgga aagtctacaa tccaggccag gcctctggta ttgccattgg cggaaacatc
    13921 tcaaccctca acctactgac tggaacagag tttgctccca gaccagacga atatattcta
    13981 tttttagagg aggcggaaga cgacgattat ctcattatcg ctcgtcactt gactgcactt
    14041 ttacaagcct atccaaatcc acaggctctt gtcttcggtc gttttcctaa agagaccaag
    14101 atgacggagg agattttgct ggcgattttg gacaagcacc ctattctcaa aaccatccca
    14161 gttctctacg atttggactt ttcccatacc cagcctctgt ttaccattac aatcggtggt
    14221 caagtggagc tcgacaccaa agccttttct atcagattca gctaaaaagg attgacccgc
    14281 aaaggtcaat ccttttttac tattcattta cgcaattatt ttgttttaat ttgcaggggc
    14341 gtacacgagg ttgcgtaggt tgcttaataa aaccagccgg taaattttct ctcgcttcta
    14401 ccaacatcag cgaatgatac cgctgcaaat attcatcgca ttcctcgcac caatgctggt
    14461 ctgattcatc ccaaaaagcc accatcgttc cattcttact tttcttcatt ggaaagtcct
    14521 ctgatagccg tacccactct ttttgaaagg cattcagtgc atcctcatag cgatcaaaag
    14581 cagccctact ggtaacatcc tcttcccaac catctaagaa ccaccagggt tcaaaatctc
    14641 catacatttt aataacttga tacataatat tacttccttt ttcgtacaca ttatatcgaa
    14701 attgtatgat ttaagaaaac attctgcttg ttaattcctt atcaagtcat atatatggtt
    14761 tctttccgaa tatcaaaaag cacatccctc aaagagagat gtgccatctt aatttattca
    14821 gttacagctt caagctctgc ttctgcagta agctcttctg ctactgtgtc ttcaatgatt
    14881 tcaacttcat tgatggcttg tggttcaaga ttacggtagc gggccatacc tgtacctgct
    14941 gggataatct taccgatgat aacgttctct ttaagaccga gaaggttgtc acgtttacca
    15001 cgaatagctg catctgtaag aacgcgagtt gtttcttgga aggatgcggc agacaagaat
    15061 gagttggttt caagggaagc cttcgtgata cccataagaa ctggacgagc tgttgccgga
    15121 ataccacctg caataaccac ttccgcattg gcatctgtaa agtcggtaat atccataagg
    15181 gtccccatga gaagatctgt gtcacctgga tccatgacac gaactttacg aagcatttga
    15241 cgaaccatta cctcgatgtg cttgtcgccg atttctacac cctggctacg gtaaactttt
    15301 tgaacttcag aaagaaggta agtttcaacc gccaagacat cacggacttc aagcaagcgt
    15361 tttggttgga tagaaccttc ggtaagggct gctccacgcg cgacttggtc accaacttca
    15421 accttcatac gggctgtaaa tggaaccaca tattcgcctt cgccagtttt ccctttaaca
    15481 aagactttct tggtacgagt agaagcatct tcttcaatag cgataacttc acctttaacc
    15541 tcagtgataa ccgcttcccc tttcggatta cgggcttcaa agatctcttg gacacgagga
    15601 agaccctgcg taatatcgct gtttgaggct acaccacccg tgtggaaggt acgcattgta
    15661 agctgtgtac caggttcacc gatagattgg gctgcaatcg taccaactgc ttcacccact
    15721 tcaaccgcat cacctgtcgc caagttgata ccgtaacaat gacggcagac accatggcga
    15781 gtgttacatg taaatacgct acggatagtt acttgttcaa cacctgcatt gacaatttca
    15841 cgggcaatat cttcagtaat caattggttt ggaccaatga taacggcacc cgtttcagga
    15901 tgtttaacag ttttcttagt gtaacgacct tgcaaacgct cttcaagtgg ctcgatcatt
    15961 tccttgccat ctgtgattga acggatgtca agaccacggt ctgttccaca gtcgtcttca
    16021 cggataataa cgtcttgggc aacgtcaacc aaacgacgag tcaagtaacc tgagtcagct
    16081 gtcttcaagg ccgtatccgt cataccctta cgggcaccgt gagttgagaa gaacatttcc
    16141 aatactgaaa gaccttcacg gaagttagac aagataggca attccatgat acgtccgttc
    16201 ggagctgaca tcaaaccacg cataccggcc aactgggaga agttggagat gttaccacgg
    16261 gcaccagagt ccatcatcat aacaattggg ttcttaggat cttgtttttc aaccaggcgt
    16321 ttttccaatt tttccttagc tgaacgccat tcatctgtaa cagctgcata acgctcatcg
    16381 tcagtaatca taccacgacg gaattgtttc ttgatttgtt ctacacgttc gtgagattct
    16441 tcaatgattt cagccttgtt gtcgataact gggatatcgg caatacccac tgtcaaacca
    16501 gcgagtgttg agtgataata acccaagtct ttcaaacggt caagaagggc tgatgtttca
    16561 gttgtacgga aacgcttgaa gatttcagcg atgatgttac cgagattttt cttcttgaat
    16621 ggtgggttga ttggcaattc tgcaatagca gccttgatat ctgaacctgg ttccaagaag
    16681 tatttatcag gagttccttc tgtcaagtta gcattgtttg gctcttgcaa gtatggaaga
    16741 ccttctggca taatcgcgtt gaacaagatt tttccgacag ttgtcatcat gaccttgtgt
    16801 ttttggttgt ctttccaagg tttatcaagg ctatctgttg caataccaac acgggtatgc
    16861 aagtgaacat agccattgcg gtaagccata acagcctcat ccgcatcctt gaagaccata
    16921 ccttcacctt cacgaccagc atcttccatg gtcaagtagt agttacccaa aaccatatcc
    16981 tgagatggtg ttacgactgg tttaccatct ttagggttaa ggatgtgttc tgccgcaagc
    17041 ataaggatac gtgcttctgc ttgtgcttct tctgacaatg gaacgtgaat cgccatctgg
    17101 tcaccgtcaa agtcggcgtt gtaagcttca cagacaagcg ggtgcaaacg aagggcttta
    17161 ccgtcgatca gaactggctc aaaagcctgg atacccaaac ggtgaagggt aggtgcgcgg
    17221 ttcaaaagaa ctgggtgttc tttgatcact tcttccaaga tatcccaaat acgatcatcc
    17281 ccgcgttcaa tcaaacgttt tgcagctttt acgttaccag caatatcacg ggcaacaatt
    17341 tcgcgcatga caaacggttt gaagagctcg atagccattt cgcgtggcac accacattgg
    17401 tacattttaa gcgttggacc aacggcgata acggaacgtc ctgagaagtc aacacgctta
    17461 ccaagcaagt tttgacggaa acgtccttgc ttacctttaa gcatgtggct gagtgatttg
    17521 agcggacggc tacctggtcc tgtaattgga cgaccacggc gaccgttgtc aatcaaagca
    17581 tctacagctt cttggagcat ccgtttttcg ttttgtacaa tgattcctgg agcgttaagt
    17641 tccaagagac gagccaaacg gttgttacga ttgataacac gacggtagag ttcgttcaaa
    17701 tcagatgcgg caaaacgacc accatccaac tgaaccatcg ggcgcaaatc tggtggaata
    17761 actggaagga tattgagaat catccactca ggcttgttac cagatttgta gaatgcatcc
    17821 aatacatcca agcgacgcac tgctttaatg cgtttttgac cagaagctgt tttcaattct
    17881 tctttcaaag ctgcgatttc ttttggaaga tcgacttgct tcaagaggtc ttgaatggct
    17941 tctgcaccca ttttggcaac gaatgaacca tagccatatt cacgcaaacg ctcacggtat
    18001 tcgcgctcag tcataattga cttgtgctca agcggtgtat ctttaggatc gatcaccaca
    18061 taagccgcga agtagataac ttcttcaagc gcacgtgggc tcatatccaa ggtcaagccc
    18121 atacgacttg gaataccttt gaaataccaa atatgtgaaa ttggtgcttt caactcaatg
    18181 tgtcccatac gttcacgacg tacttttgca cgagtcactt caacaccaca gcggtcacaa
    18241 gtaatccctt tataacggat acgcttgtat ttaccacatg aacactccca gtcttttgtt
    18301 ggaccaaaga tgacttcgtc aaagagtcca tcacgttctg gtttaagtgt acgatagttg
    18361 attgtttcag gttttttaac ctcaccgtaa gaccatgaac ggaccttact tggtgaagct
    18421 aacgtgattt gcatactttt aaatcgattt acgtcaacca ctaataatcc ctttcttttc
    18481 ttgtgagagg ctggattccc agacctcaaa ttcttgaata ataatcagca gaatggatag
    18541 ctggtaagct atttttctat aaatcagacg gtggaagacc gttggccttt atctctttca
    18601 gttctgaggt ttggaccaac ttgttccatc cattctaatt attctttgcc ttctgcttct
    18661 tctgctgcaa aggctgcggc tgcgtcagct gcggcttttg cacgcgcttt ttcaagatca
    18721 tctacgtgga tgatatcatc atcttcacct tcatcaaggt cacgcaattc aacttcatta
    18781 tcatcttcat caaggacacg catatcaaga ccaagtgatt gcaattcttt aacaagaacg
    18841 cggaatgatt ctggaacacc tggttttgga attggtttac ctttagtgat agcttcatag
    18901 gctttcaaac gaccagttac gtcatctgac ttataggtca agatttcttg aagaacgttt
    18961 gaagcaccat aagcttcaag ggcccatacc tccatctcac cgaaacgttg tccaccgaat
    19021 tgtgctttac caccaagcgg ttgttgggta acgagtgagt atggtccaac tgaacgtgcg
    19081 tgaagtttat cgtcaaccat gtggtggagt ttgatcatgt acatgacacc aactgacaca
    19141 cggttatcga atggctcacc agtacgtcca tcgtaaagaa tagtcttggc gtctgagtcc
    19201 ataccagctt ctttaacagt tgaccagagg tcttcagagc ttgctccatc gaaaactgga
    19261 gttgcaatgt ggatacccaa gttacgagca gccataccca agtgcaattc cataacctga
    19321 ccgatattca tacgtgacgg caccccgaga gggttcaaca tgatatcgac aggagttccg
    19381 tctggcaagt atggcatatc ttcaacagga acaatacgtg aaacgacacc cttgttaccg
    19441 tgacgaccgg ccattttatc tccgaccttg attttacgtt tttgagcgat gtaaacacgg
    19501 acaagcatgt tgacacctga ttgcaattca tcaccgttgg cacgagtaaa gattttcacg
    19561 tcacgaacga caccgtcggc accgtgaggt acacgaagtg atgtatcacg aacttcacga
    19621 gatttatctc cgaagatagc gtggaggagc cgttcttcag ctgacaagtc tttttcaccc
    19681 ttaggtgtga ctttaccaac aagaatgtcg ccctctttaa cttcggcacc aatacggata
    19741 atccccattt cgtccaagtt gcgaagagca tcttcaccaa cgtttggaat ttcgcgagtg
    19801 atttcttcag ggcctaactt ggtatcgcgt gtttctgatt cgtattcttc caagtgaaca
    19861 gatgtataga catcatcttt cacaaggcgt tcagacatga taaccgcatc ctcgaagttg
    19921 taaccttccc aagtcatgta ggcaacgatt gggttttgtc caagcgccat ttctccattt
    19981 tccatagaag gtccatcagc gatgaaatca cctttttcaa cgatatcgcc aactttaacg
    20041 agtgtacgtt ggttgtaagc agtacctgag tttgaacgac ggaattttga aacgtgataa
    20101 acgtctaaag aaccatcttc acggcgaact tcaaccttgt cagcatctga gtaagtaacc
    20161 ttaccatcat gttgcgcaat gattgccgca ccagagtcat gggcagcttg gtattccata
    20221 ccagtaccaa cgtaaggtgc ttttggatca atcaatggaa cagcctgacg ttgcatgttg
    20281 gcacccatga gggcacggtt ggagtcatcg ttttccaaga aaggaataca cgctgtcgca
    20341 acggcaacta cctgtttagg agaaacgtcc ataaagtcgg cagaagcagc tgggaattct
    20401 tggttattac cttgatgacg acccattacg atctcgtcaa caaagcgatt gttttcatca
    20461 agtggtgaag tagattgggc tacgatgtaa gcatcttctt catccgcagt caaccaaaca
    20521 atttcatttg taacagtacc agttgcacgg tcaattttac ggtaaggtgt ttggatgaaa
    20581 ccgtacttgt tgaggtgacc ataagatgac aagttattga tcaaaccgat gtttggtccc
    20641 tcaggtgttt caatcggaca catacgacca tagtgggtgt agtgaacgtc tcgaacctca
    20701 taaccagcac ggtcacgagt caaaccgcca ggtcccaagg ctgacaaacg gcgtttgtga
    20761 gataactcag aaagtgggtt gtgttggtcc atgaactgtg acaactgaga tgaaccaaag
    20821 aattctttta ttgcggctgt aacaggacgg atattgatga tttgttgtgg agttaagact
    20881 tcattgtctt gcacgctcat acgctcacgc aagttacgct ccatgcgagt caaaccgata
    20941 cgaacttggt tagcaagcaa ttcaccgaca gcacgaatac gacggttacc caagtggtca
    21001 atatcatcta cgcgacccaa accttcagca aggttgagga agtaagacat ctcagtcaag
    21061 atatccgctg gagtcactgt acgaacattt tcagctggat ttgcattacc gataactgtt
    21121 acaacacggt ctggatcagt tggcgcaaca atcttgaatt tttgcaagag aactggctca
    21181 actaccaccg ctgcatcgtt tggaatgtac tcaacttggt tgagctcatc aaattgattt
    21241 tcgattgatt ccaaaacatc acgactcaat acagtaccag cttccaagac gatttcacct
    21301 gtctcaccgt taatcacatg ctcagcaagt gtttggttga gcaaacgagt acggaggttg
    21361 agttttttat taatcttata acgaccaaca ggtgctaagt cataacgacg tgggtcaaag
    21421 aaacgagctg tcaaaaggct acgagagctt tcagctgtct ttggctcacc tggacgaagg
    21481 cgctcataga tttccttaag cgcttcatcc gtacgagaat ctgctgggtt tttatgaata
    21541 tctttttcaa tggtattgcg aaccaattcg ctatcgccaa agatgtcaaa gatttcatca
    21601 tcgcctgaga aaccaagcgc acgaacaagc gttgtgaacg gaatcttacg cgtacggtca
    21661 atacgagtgt aggcaatgtc ttttgaatct gtttccaatt ccaaccaagc tccacggtta
    21721 gggataacag tcgaaccgta gccaacctta ccgtttttat ccaccttatc gttgaaataa
    21781 acacctggtg aacgaaccaa ctgagaaacg atgatacgct ctgcaccgtt gatgatgaag
    21841 gtacccattt cagtcatgat tggaaactca ccgaagaaga cttcttgtgt cttgatctcg
    21901 ccggtttctt tattcaccag acggaaagtt acataaattg gagctgagta gttcgcatca
    21961 tgcgcacgcg cctcttccaa tgtgtattta ggctctttca attcataacc aacgaattcc
    22021 aattccatgg tatccgtaaa gtttgaaact ggaagtacat cttcaaagac ttctttcaaa
    22081 ccgtaatcta aaaagtcttg gaaagagtcc gtttgaattt caatcaaatt tggtaaatca
    22141 agaacttcct tgattcttga aaaactacga cgggtacggt gcttaccgta ctgaacttca
    22201 tgtcctgcca aaagttttct cctttgtaat aagatactaa gccgtaaaca actcaaagaa
    22261 aaataggaaa cacgacgacg gaggcaagcc tcctaggagc tgtttatctt ttttcacaga
    22321 gttgtaggcg agttcaatta aaagatacga gaccgtgaaa accaaagtga aaataagcgg
    22381 taagtccaaa atctttgatt ttgttgacgc accctcgtca gaacgactag gactttcttg
    22441 acaaatcgtc gaagaaaggc cagacgttta cgacgttggg agtgacaaac caaagtaaat
    22501 atttcataca ctttttcaca aaggttttag gtcgagttca attatataca gccatgtgat
    22561 gaccaacatt catccttttt ctgaattttt agaatcttta agaataggta acaattctca
    22621 aaaaaattcc tcatagacac aaaaagagca gctaaatctt cctttgaaaa agtttgattt
    22681 aactgctgca agccttgttt ggacaatatt tcaaacaaga cacacgacaa ataatttaca
    22741 ctattatagc acaagtacta ggaaaaatca aggtgaatca ttattcgctt gctcactagt
    22801 tgctgtttgc gtttctgatg actgggtcgt gttattagct gaagaagccg tgctactccg
    22861 agtcgaactg cttcgttggg ttgagctact tgatgttggc gtttgggaac cgataattgt
    22921 attccaagcc tgtgctcggt cactatctgt ccccccaacc atgaagttat agctcgttac
    22981 tggtgcacca tttttagccc aataactagt tgtcatcgca ccaccaactg ttacttggcg
    23041 cccatttacc tgtgtcgtcc ctgcacgttg acctgtagaa gcaacgacac tagaagcaat
    23101 aacactactg tctaattcaa attttcctgc gaacatatcc gcattaacat tgtaaagcgc
    23161 atcaaccata tgggccacat attgtgaatt attgtggtag cctgtccaga catacatttc
    23221 tgagttatca tcattcccag cccaggtacc taaagttact ctaggggttg atagcatgag
    23281 ccacacgtca ttaacttcat tacttgtccc cgtcttaccg acgaaatcag atgatgctgc
    23341 ctgtgggttt aaaccactca atcgactctt gaacgtcgta gtataaccag agttgacaac
    23401 ctgtctcaaa agctggttca taatacttgc agttgcttta gaatagactt gaaccggagc
    23461 cgctttatgc tgatacacta ctgttccatc agaagcagta atgctttcaa caatgtaatg
    23521 tttgttataa acgccaccat ttgccaaagt ttgataggca ttggtatttg tcaatactga
    23581 aatttcaaca ccaccgccca acggtacact ttcaatattg tacataggaa tatgataatt
    23641 cattttatcc atgtacgctt tggcatctac acctgcattt ctcatcatct tataggtcca
    23701 aaaagcagga atgttaacag aacggtcaat agccgtctgt aagttcatca taccagtacc
    23761 acgtcctgaa ccatacataa tcggttgtcc acttgaaaag ttcgttggat aatctgaaag
    23821 gatgctggca gaacctatca aaccttgatc aatcgcaata ccgtaagcta acagaggctt
    23881 gatggttgac gctggcgaac gaagggtatc aaaggcatgg ttattttggt tggttgcata
    23941 gtcgcgacca cccacaaatc ctaaaatggc ccctgtggca ttatcaatta acacactacc
    24001 tgtctcgaca tattcgtttc catcatccaa aacagatcca tagtttgcca caacagactg
    24061 catcgccgca tagatttttt gatcaacggt actcttaatc gtgtagccac cttggctcaa
    24121 ttcttgcttg gccaactcct cataggatgc ctttgtttca tcatttttca agtcattttt
    24181 agaaaccttg tcacgtttca ccaggtaatc aaacataacc tcttgcgctt cttccatgac
    24241 cttgtaatag agataatctt tcgtatccgc cattacagga gctggagcaa taaaatcttg
    24301 tttaatatcg taagctttgt aggtttcgta ttcttccttg gtcaagaatg acgcccgata
    24361 catattaaag agaacatctt gatagcgttc aataccgtaa accatatcct catctgattt
    24421 acgtgttcca tctgatgcat agggagaata aacaattgga ctttgcggta aacctgcaat
    24481 aaaagcagcc tgcggaacag tcaagtcttt cgctggttta ccaaaaattc cctgagccgc
    24541 agcttctacc cctgcaatat ttcgtccctg attatttcga ccaaatggag aaacatttag
    24601 gtaaatggtc aaaatctctt ccttggtcat attccgctct aatgccaaag ccgaaacaat
    24661 ctcattagcc ttacgcgtaa aggttggagc atctccgaca agttgctgtt ttatcaattg
    24721 ctgcgtcaag gttgaaccac cacttgatga acctagacca actgatccca gtgccgcacg
    24781 caaaactgcc ttgggcacga ccccattatg ggtttcaaat gtttcatcct ctgtcgcaat
    24841 tacagcctgt tttagataat tcgagacctc ttccgaagta ataggtacac gaagcagatc
    24901 tgaattcact tccgacacca agctaccatc cgaataggta acggtggaaa tccgactaac
    24961 ttctgaaacc ttcgctacca gttcctctgt tttgggaatc ttaacgtcat caaaaagact
    25021 aaccacgaaa ccaattccta tacccgcacc aaaaagaccg aataggaaca ccaagacagc
    25081 tactgaattg aataataatt tcagcgtccg aaggaaaact cctactacat cccctaagcc
    25141 tagggcactg attttctttt taaaatcttg cttatctgat ttagtcgcca tattaactcc
    25201 ttatcgttcc attataccaa attttgttta ttttccgcaa tttcgtggta taatagggag
    25261 gaatttttta aaatgaagtt cggtccaaaa atcatataaa atggtttatg gtcctgtata
    25321 ttaaacctaa aggagacagc ccacatgaat atttttgaag aactaaaagc tcgtggcttg
    25381 gtctttcaaa cgacagacga agaagccttg gtaaaagcat tgacagaagg acaggtttct
    25441 tattacacag gatacgatcc aacagcagat agtttacact tggggcactt ggttgctatc
    25501 ttaactagcc gtcgtttgca gttggcaggc cacaagcctt acgccctagt tggcggtgca
    25561 actggtctga ttggcgaccc ttccttcaag gatgcggagc gtagcttgca aaccaaagat
    25621 accgtggacg gttgggtgac aaaaattcaa ggtcaactct ctcgcttctt ggattttgaa
    25681 aatggtgaca acaaggctga aatggtcaac aactacgact ggttctcaga catcagcttt
    25741 atcgacttcc ttcgtgatgt tggtaaatac tacacggtca actacatgat gagcaaagac
    25801 tctgtgaaaa aacggattga aacagggatt tcctacaccg agtttgccta ccaaatcatg
    25861 cagggctatg acttctacga gctcaatgac aagcacaatg tgaccctaca aatcggtggt
    25921 tctgaccagt ggggcaatat gactgcaggt accgagttgc ttcgccgcaa ggctgacaag
    25981 tctggtcacg tgatgactgt tcccctcatc accgactcta ctggtaagaa gtttggtaag
    26041 tcagaaggca acgctgtttg gttggatgcc gacaagactt ctccgtatga aatgtaccaa
    26101 ttctggctca atgtcatgga cgacgatgcc gttcgtttct tgaaaatctt tactttcttg
    26161 tcattagatg agatcgctga aatcgagaaa caatttgacg ctgcccgtca tgaacgcctg
    26221 gctcagaaga ttttggctag ggaagtcgtg acattggtcc acggtgaaga agcctataac
    26281 caagccctta acatcaccga gcaattgttc gcaggcaata tcaaaaacct atccgcaaaa
    26341 gaactcaaac agggcctcag caacgttcca aactacgctg tacaggctga agacaacctt
    26401 aacatcgttg aactcctagt cacctctggt attgtcaact caaaacgcca agctcgtgaa
    26461 gatgtgcaaa atggtgccat ttatgtcaac ggtgagcgtg tgcaggactt ggactatacc
    26521 ctttctgaca gtgacaagat tgacggcgag ctgaccgtta tccgtcgtgg taagaaaaaa
    26581 tattcagttt tgacttatta agcgatgaaa aataccaagc aaaatcctaa aaatcaagaa
    26641 tttttgaacg actactttga acaaatggct caggaagcca gtcttttgca tcccgagtta
    26701 gagcatttgt ctgccgatga acatcaagca tttttggacc aactctatcg tgaggatgag
    26761 acacgtcgtg ccaaacgcct gaaggaacat ctagaggtgt tctccgacgc agtgattggg
    26821 gttatcatca ccatgatgtt gctggaaatt cctttaccaa gcgacactgt tgatacacat
    26881 cactttttca ctggcatcct catcttcttt gtatcctttt tcatcgtggc ggatttttgg
    26941 tatgacaacc acaagattct gggacagatt gagcacgcaa ccagcaaaat cttaattgtt
    27001 caattcaact ttatggcaac gctggccctc attcccctct ttactcggtg gatgatggaa
    27061 ggcataacca ctacggctgt tgttggttat ggggtcgtga ccattgcagt caatctctgt
    27121 caatccattt tgaattactt tgtcctacaa gaaaagtttg ccggaacaac atatacaaag
    27181 cggtttgttt ccatggcaca cttacggcaa ttggtgaccg tcgccctttt caacatcgtc
    27241 attatcctat ttgcttactt taatccgaca cttgcctttt atttctacat tttacgacca
    27301 atcgtatctt tcctaggagc agccttcttc gaaaagaaac ggcaggagcg gaaagaaaaa
    27361 atggcagtta gagtaaatca catataattc ccaaggaaat cctatatgat ttccttttct
    27421 gctaacctag gagaaaagac atgacctgca ttttttgcca ccaactcgaa gaagaagata
    27481 ttatctacca gacggagcat ttcaaggtag tctgggacat tgaccctgtc caaactggac
    27541 atctactgat tatcagcaag aaacactatg acacacttag ccaaatctct cccattattc
    27601 gctatgagct gtcagacttg gaagtcttct tgactgataa actctgtcaa gcattggcga
    27661 ttgacggtgt gaccatagcc tgcaacgatc gcttgtttga tgctgacacc catttccacc
    27721 tacacctcat tccgcggttt caatcagacg gcttctggga ccaaatttca cttgcacaag
    27781 tgcaactaga cctgaacgcc tttctcaaag cattataaaa agcagcccaa cggctgcttt
    27841 ttcgcttata tagtcgttta gtttactttt agtacaaggc aacgagcc
//
LOCUS       DASFRC010000008        26616 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.008, whole genome shotgun sequence.
ACCESSION   DASFRC010000008 DASFRC010000000
VERSION     DASFRC010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 26616)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26616)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26616
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.008"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..5369
                     /locus_tag="U1087_000261"
     CDS             <1..5369
                     /locus_tag="U1087_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003084104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEM4754786.1"
                     /translation="PPQDITFREEGGIVIASLEEDLSQLDLRTGQTEHLSAYEHLNLS
                     QKFEILSHFDQVRNSRPKLPNLRRGEFDHEMEMTPIYADNELLTYLEANGTIYDLQRP
                     LTPQQEVILTEMSQTILGENTEKLTRLGIDLADVDEQQRGILIDAAGRFHLNNADLAL
                     LGGYPKATVTQLALATELLQMGLTHDKAEFFLTSQLDLEEARPIAYAFLHEDLTLEEV
                     RTFERDKLSQPDLSFREWREHISQTKPEIMTQSLPQNPIVEEALKRYPIASIVTYKGQ
                     EFQVMAIEDSGVNNLIRIELQNDFTDVIEQNPVLFLRTLEDITQALHVPSVEEKEEME
                     ETQQEFDLFSFMDMEESQEPVSQMTASVPSNKGEAKQEEALSEDELEPKVIKTPPATD
                     FHFPEDLTDFYPKTTRDKVETNVAAVRLVKSLESEHRQATPSEQELLAKYVGWGGLAN
                     EFFDEYNPKFSKERGALKTLVTDKEYSDMKLSSLTAYYTDPHLIRQMWEKLERDGFTG
                     GKILDPSMGTGNFFAAMPKHLRENSKLYGVELDTITGTIAKHLHPNSHIEVKGFETIV
                     FNDNSFDLVLSNVPFANIRIADSRYDKPYMIHDYFVKKSLDLVHDGGQVAIISSTGTM
                     DKRTENILQDIREMTDFLGGVRLPDNAFKAIAGTNVTTDMLFFQKHMDKGYVADDLAF
                     SGSIRYDKDDRIWLNPYFDGDYNSQVLGSYEVRNFNGGTLSVKGTSDNLIEAVQTALK
                     QVKAPRSVDPSDILITPDVMRRQVIDTSVPPEIRESLDQYSFGYKDSTVYYRDHKGIR
                     VGTKTEEISYYVDEEGTFKAWDTKYSQKQIDRFNALEVTDSTALDVYVTEEAAKRGQF
                     KGYFKKTVFYEAPLSEKEVARIKGMVDIRNAYQEVIAIQRYYNYDKDEFNHLLGHLNR
                     TYDSFVKRFGYLNSAVNRNLFDSDDKYSLLASLEDECLDSSGKTVSYTKSLAFEKALV
                     RPEKEVTAVSSALDALNSSLADGRGVDLDYMMSIYQTDSKASLIEELGDAIIPDPERY
                     LNDREVVYESRKDFLSGDVMTKLEVVDLLIKEDNSDFPWQHYQNLLEDVKPPRVTLAD
                     IDYRIGSRWIPLAVYGKFAQETFMGQTFDLTDQEVSTVLEVSPIDGTMSYQSKFAFRY
                     STATDRSLGVPGSRYDSGRKIFENLLNSNQPTITKQVEDGDKKKHVTDVEKTTVLRAK
                     ETELQELFQDFVASYPEVQQMIEETYNSLYNRTVSKVYDGSHLTIDGLAQNISLRPHQ
                     KNAIQRIVEEKRALLAHEVGSGKTLTMLGAGFKLKELGMVHKPLYVVPSSLTAQFGQE
                     IMKFFPTKNVYVTTKKDFAKAKRKQFVSRIITGDYDAIVIGDSQFEKIPMSQEKQVTY
                     IQDKLNQLREIKQGSDSDYTVKEAERSIKGLEHQLEELQKLERDTFIEFENLGIDFLF
                     VDEAHHFKNIRPITGLGNVAGITNTTSKKNVDMEMKVRQVQGEHDYRNVVFATGTPVS
                     NSISELYTMMSYIQPDVLERYQVSNFDSWVGAFGNIENAMELAPTGDKYQPKKRFKKF
                     VNLPELMRIYKETADIQTSDMLDLPVPEAKVIAVESELTEAQKYYLEELVDRSDAIKS
                     GSVDPSVDNMLKITGEARKLAIDMRLIDPAYTLSDNQKILQVVDNVERIYREGENEKA
                     TQMIFSDIGTPKSKEEGFDVYNELKDLLVDRGIPKEAIAFVHDANTDDKKNSLSRKVN
                     SGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDVGRILRTFKIKKNVEVTDNG
                     KDNF"
     gene            5350..5719
                     /locus_tag="U1087_000262"
                     /pseudo
     CDS             5350..5719
                     /locus_tag="U1087_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001129922.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TnpV protein"
     gene            6086..8005
                     /gene="tet(O)"
                     /locus_tag="U1087_000263"
     CDS             6086..8005
                     /gene="tet(O)"
                     /locus_tag="U1087_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032490535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance ribosomal protection
                     protein Tet(O)"
                     /protein_id="HEM4754787.1"
                     /translation="MKIINLGILAHVDAGKTTLTESLLYTSGAIAEPGSVDKGTTRTD
                     TMNLERQRGITIQTAVTSFQWEDVKVNIIDTPGHMDFLAEVYRSLSVLDGAVLLVSAK
                     DGIQAQTRILFHALQTMKIPTIFFINKIDQEGIDLPMVYQEMKAKLSSEIIVKQKVGQ
                     HPHINVTDNDDMEQWDAVIMGNDELLEKYMSGKPFKMSELEQEENRRFQNGTLFPVYH
                     GSAKNNLGIRQLIEVIASKFYSSTPEGQSELCGQVFKIEYSEKRRRFVYVRIYSGTLH
                     LRDVIKISEKEKIKITEMCVPTNGELYSSDTACSGDIVILPNDVLQLNSILGNEMLLP
                     QRKFIENPLPMLQTTIAVKKSEQREILLGALTEISDGDPLLKYYVDTTTHEIILSFLG
                     NVQMEVICAILEEKYHVEAEIKEPTVIYMERPLRKAEYTIHIEVPPNPFWASVGLSIE
                     PLPIGSGVQYESRVSLGYLNQSFQNAVMEGVLYGCEQGLYGWKVTDCKICFEYGLYYS
                     PVSTPADFRLLSPIVLEQALKKAGTELLEPYLHFEIYAPQEYLSRAYHDAPRYCADIV
                     STQIKNDEVILKGEIPARCIQEYRNDLTYFTNGQGVCLTELKGYQPAIGKFICQPRRP
                     NSRIDKVRHMFHKLA"
     gene            8057..8230
                     /locus_tag="U1087_000264"
     CDS             8057..8230
                     /locus_tag="U1087_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine-rich KTR domain-containing protein"
                     /protein_id="HEM4754788.1"
                     /translation="MMKCEWILCPVCGSKTRNKIRKDTVLENYPLYCPKCRQERLIKV
                     DNLKITVIKEPDA"
     gene            8718..9230
                     /locus_tag="U1087_000265"
     CDS             8718..9230
                     /locus_tag="U1087_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007392094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEM4754789.1"
                     /translation="MVKYAPRKVYIRESGGYVELSYTEFCRCRESDQTYMDKLFIPIQ
                     GCLLEVVREQYTDFYRDKERWRYLQKLDTKNRLLSLDGFTDSEGNPLDFITDEAVDIA
                     ETVVNAVMVDRLKAALPLLSDSEQELIQAIFFDGLSEREVGARLGITQSVVNKRKARI
                     LIKLRKIIEN"
     gene            9325..9750
                     /locus_tag="U1087_000266"
     CDS             9325..9750
                     /locus_tag="U1087_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000323896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEM4754790.1"
                     /translation="MAYNHGREDRKWRIWKEAEEKLLRECGVDEATIEQIRMADRADF
                     NSNRRFYRWTNDVAEYLEDMAGRERQAEVGTVAELLEEIESENLYQVLVTVDGRTLKI
                     VLLKMQGYSTKEIAPLVHLTTGAIYARLDHLRKKLRKIL"
     gene            9834..10308
                     /locus_tag="U1087_000267"
                     /pseudo
     CDS             9834..10308
                     /locus_tag="U1087_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000331637.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
     gene            10463..11488
                     /locus_tag="U1087_000268"
     CDS             10463..11488
                     /locus_tag="U1087_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015521636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM4754791.1"
                     /translation="MQKLQTVNAETLLYEPLEKPSFVVDSLIPTGLSLFCGSQKIGKS
                     WLMLKLCLCVSQGIPLWDMPTMEGDVLYLCLEDTFCRIQDRLFRLTDEASGRLHFAVA
                     SCKLSDGLIVQLEDYLKDYPDSRLIVIDTLQKVRTASKDNAYASDYGDISLIKDFADR
                     HSLAVIVVHHIRKQNDSDVFNKVSGTTGLTGSADATFVLEKEKRASDTAKLYVTGRDT
                     PYQEYTLRFRDCRWELVERKTQEQLAKETIPDVLFRLVDFMRDKEEWIGTATELLAAM
                     GETETIPTVITKWLNEYRTTFLSENRICYQYSRRKDGRRIALARRAGDSGDGGDSDIR
                     IPPCYCH"
     gene            12013..12978
                     /locus_tag="U1087_000269"
     CDS             12013..12978
                     /locus_tag="U1087_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002569195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid recombination protein"
                     /protein_id="HEM4754792.1"
                     /translation="MPYAILRFQKRKAGGVAACERHNERKKEAYKSNPDIDMERSKNN
                     YHLIAPPKYTYKKEINRMVAEAGCRTRKDSVMMVETLITASPEFMNQLPPEEQKAYFQ
                     TALDFISERVGKQNILSAVVHMDERTPHMHLCFVPITPDNKLSAKAILGNQKSLSEWQ
                     TAYHERMSSRWNQLERGQSSMETKRKHVPTWLYKLGGRLDKQYEEIVSALSDINAFNA
                     GKKRDKALDLLSAWLPDVEKFSKEIGKQQAYIDSLKERIGQESDYAGRMRDEKYEQEL
                     KVQKANQKIFELQRTNEQMGRLLSKIPPEVLEELQKNHRSRAKER"
     gene            12987..13841
                     /locus_tag="U1087_000270"
     CDS             12987..13841
                     /locus_tag="U1087_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002596257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEM4754793.1"
                     /translation="MKKQDFKVLKTKDLYPFPDNPFHVAEDETLSELAESIKEFGIVT
                     PIITRPKEDGDGYEVIAGQRRVRASELAGINTVPAFVLPLDRDRAIITLVDSNLQREN
                     ILPSERAFAYKMKSEAMKRQGFRTDLTSSQVVTKLRTDDKVAQGFGVGRMTVQRFIRL
                     TELIPPILQMVDEGKIALTPAVELSFLKKDEQENLFATMESEEATPSLSQAQRMKQLS
                     QSGRLDMDTIFAIMTEEKGNQKETLKINTSKLKKYFPKNTTPKQMEETIIKLLERELQ
                     RKRNRDSR"
     gene            13887..14117
                     /locus_tag="U1087_000271"
     CDS             13887..14117
                     /locus_tag="U1087_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001206986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754794.1"
                     /translation="MREIQYEIVKEIAVLSTGDSGYTKEINLISWNGKEPKYDIRSFS
                     PNREKCGKGITLNADEAAALLKALQKELNSED"
     gene            14117..14380
                     /locus_tag="U1087_000272"
     CDS             14117..14380
                     /locus_tag="U1087_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000253176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stage II sporulation protein R"
                     /protein_id="HEM4754795.1"
                     /translation="MVSDWQGGDISKLFPALSGKEDLSMGEDKKADKKRKRIVPKAPV
                     QMIISREYVGTQTVTEAFVPIISEDIRKKIAEGDTFDNEGLSA"
     gene            14435..14611
                     /locus_tag="U1087_000273"
     CDS             14435..14611
                     /locus_tag="U1087_000273"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase"
                     /protein_id="HEM4754796.1"
                     /translation="MAGIKEEKKIYLVGIYCRLSKDDGTDNESASIATQKSILTDYVK
                     KQGWHIAKTYKSPL"
     gene            complement(14625..14909)
                     /locus_tag="U1087_000274"
     CDS             complement(14625..14909)
                     /locus_tag="U1087_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002326770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="topoisomerase DNA-binding C4 zinc finger
                     domain-containing protein"
                     /protein_id="HEM4754797.1"
                     /translation="MPTKRSGPLVGKCPKCGNNIVLKKSFYGCSNYPECTFTLAEHFR
                     KKKLTKTNVKELLEGKETLVKGIKTKDRKSYNAVVKIGEKGYIDFISFSK"
     gene            complement(15055..15792)
                     /gene="erm(B)"
                     /locus_tag="U1087_000275"
     CDS             complement(15055..15792)
                     /gene="erm(B)"
                     /locus_tag="U1087_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011018369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2058)-N(6))-methyltransferase
                     Erm(B)"
                     /protein_id="HEM4754798.1"
                     /translation="MNKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLT
                     TKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRYKIVGNIP
                     YHLSTQIIKKVVFESHASDIYLIVEEGFYKRTLDIHRTLGLLLHTQVSIQQLLKLPAE
                     CFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYFVSKWVNREYRQLFTKNQFHQAMKHA
                     KVNNLSTVTYEQVLSIFNSYLLFNGRK"
     gene            complement(15830..15985)
                     /locus_tag="U1087_000276"
                     /pseudo
     CDS             complement(15830..15985)
                     /locus_tag="U1087_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002333002.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin"
     gene            complement(16002..16211)
                     /locus_tag="U1087_000277"
     CDS             complement(16002..16211)
                     /locus_tag="U1087_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000527318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-binding protein"
                     /protein_id="HEM4754799.1"
                     /translation="MGNLGAQKAKRNDTPISAKKDIMGDKTVRVRADLHHIIKIETAK
                     NGGNVKEVMDKALEEYIRKYLPDKL"
     gene            complement(16309..17205)
                     /locus_tag="U1087_000278"
                     /pseudo
     CDS             complement(16309..17205)
                     /locus_tag="U1087_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002355409.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
     gene            17277..19001
                     /locus_tag="U1087_000279"
                     /pseudo
     CDS             17277..19001
                     /locus_tag="U1087_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003084608.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
     gene            19118..19927
                     /locus_tag="U1087_000280"
                     /pseudo
     CDS             19118..19927
                     /locus_tag="U1087_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017646980.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helicase SNF2"
     gene            19997..20296
                     /locus_tag="U1087_000281"
     CDS             19997..20296
                     /locus_tag="U1087_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000194854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754800.1"
                     /translation="MTQTVEDIRYQLEEWLAQGFTSSEDRANYQALKEQYEDETLDYS
                     FSKREIIGQLEVIITTRENDFPDLDEVTKEEYLELVEQLDNLDKGQADYYRKQLA"
     gene            20311..20601
                     /locus_tag="U1087_000282"
     CDS             20311..20601
                     /locus_tag="U1087_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006738782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754801.1"
                     /translation="MIEQIIQSLFIIAVTGLILLVLYQIAKMLGSLFVIGLIGFLAFT
                     EVYGIYLFFTERYLYVEDLATNGIFSFTTFYIIFNLLLVFGLVRKVVRSRMA"
     gene            20712..21350
                     /locus_tag="U1087_000283"
     CDS             20712..21350
                     /locus_tag="U1087_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017771980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEM4754802.1"
                     /translation="MLNKMKARLLIGLGGLAVTSFMVMMGYTIGSQSVTNHTQKQIQS
                     EAQKLLTKEKEKEKASVLSDELVKEFLTQYYTKEKLGENNNRIKPYMTDSAFKEEVAR
                     QEDSINQIYKDYMLDYRFESANIYVNTEANEAFAEVSYQVVYVSEVSDKAQKSTQTET
                     RTLKLSYAKMSDKLLVNQVTIWNGKLEDLKESSDGSDSSIPKIQGTTTSETN"
     gene            21390..22478
                     /locus_tag="U1087_000284"
     CDS             21390..22478
                     /locus_tag="U1087_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006739884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HEM4754803.1"
                     /translation="MTRIEKVKQKAILEVAESLGYSFKRLSGQVYEHPEHDSFRIFAD
                     TNTFKWFSRDVQGDVIDFVQLMTGVSFKKALSYLETGDFEQAKIVEETYQPFRYYLRE
                     EPFDQARIYLNDIRGLSDDTINAFGRQGLLAQAHYQTKTFQESVLVFKSYNHQGQLEG
                     ASLQGLVKNAQRHDRDYLKKIMKGSHGYVGMSFDIGKPKRLIFCESVIDMMSYYQFHQ
                     KQLSDVRLVSMEGLKLSVIAYQTLRLTAEEHDKLNFLDNIKPSKLTYFLRIIQETTVF
                     FQNHPGLITLAVDNDEAGRGFCQKLSEKGLPIETDLPPLQELETKADWNDIVKYQNNY
                     SLKDVIQSAKLQVIRNNPPPRKNTALEL"
     gene            22532..22759
                     /locus_tag="U1087_000285"
     CDS             22532..22759
                     /locus_tag="U1087_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000110925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754804.1"
                     /translation="MSVIERLAERVARQEEKVAKETEKLETYRSQLQTAMYQAFIKRQ
                     QNSPWTFDEALTQAFGQDEQKLKPSDNRNEE"
     gene            22763..23158
                     /locus_tag="U1087_000286"
     CDS             22763..23158
                     /locus_tag="U1087_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000048064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HEM4754805.1"
                     /translation="MTKDWTFDQPLDDNTPTSSSEERAKIAALFHKENQEGTEDVDYV
                     AAFEMEQQKSKNQMAPQQKPQEQSTPKEVSSSTITNDYKQHLADVMAQNNEDIRQSQK
                     KIEELHQLIDDKNKQNKKLQAISVAIDDL"
     gene            23203..23487
                     /locus_tag="U1087_000287"
     CDS             23203..23487
                     /locus_tag="U1087_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006738783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754806.1"
                     /translation="MKLFKKQTHNQDSFKRLIHRLSGMSEADLHKVNQLLDVVFDSTS
                     QTTNDVKAPKDLQKEPTLDETITEAKNKLKTEQLEKRIEQFSQAKKPKSE"
     gene            23557..24033
                     /locus_tag="U1087_000288"
     CDS             23557..24033
                     /locus_tag="U1087_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013851913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM4754807.1"
                     /translation="MIGDNIKSLRKTHDLTQPEFAKIVGISRNSLSRYENGTSSLSTE
                     LIDRICQKFNVSYVDIVGEEKMLTPVEDYQLTLKIEVIKERGAAILSELYRYQDSQGI
                     TFDDETSPWILMSDDLSDLINTKIYLVNTFDEVERYNGYLDGIERMLELANHQVVA"
     gene            24033..24800
                     /locus_tag="U1087_000289"
     CDS             24033..24800
                     /locus_tag="U1087_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003004890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zeta toxin family protein"
                     /protein_id="HEM4754808.1"
                     /translation="MRLEEFSKDDFDLALKRTIRSLTRGKTTSVTPKAILLGGQSGAG
                     KTTIHRIKQKEFQGNIIIIDGDSYRSLHPNYLTLQEEYGKDSVDYTKGFAGKMVEQLV
                     DELSKQGYHLLIEGTLRTTEVPRKTARLLKARGYQVSLALIATKPELSYLSTLIRYEE
                     VYAVKPSQARATPKEHHDGIVEHLVDNLRELETDKLFDQIQIYQRDRTCVYDSEMDDG
                     PAAEVLLECLFGKWNKVEEEMLRDVEEKIANLKVSNE"
     gene            24816..25604
                     /locus_tag="U1087_000290"
     CDS             24816..25604
                     /locus_tag="U1087_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013851911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754809.1"
                     /translation="MTTIKKVIYFDESTAMDFLQIESKGKLTKTTELMSTLEGGADAQ
                     IIGEVSLGKNSALKTIFEKMAGLSGTASISSSGSGAIQGNKIAKTILENSLLYDFLDT
                     VELRKKNYLVDITENYTLEISENSMSYFAMIAPISEMMEGSQSIDGLENVSMSFSKLN
                     SGIREIKGYFELLGYNKAHEIERIFRFNINSFKNNYRIHDLTKMTLKLYSIKVGETTI
                     SDLDFESQFSLRRNHLSFSALSEDGNVDKSMKYPVYDVILAGVN"
     gene            25605..>26616
                     /locus_tag="U1087_000291"
     CDS             25605..>26616
                     /locus_tag="U1087_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013851910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HEM4754810.1"
                     /translation="MDSILLFKGSKRDFDKLLDSKEIEDYTPFMELIRQYNITVRAND
                     VNASQYIADGFGKEHIENVVIYADDYASVTDHVISNFNNIVLLGHDIQNLYIQNPPKR
                     VESSLRVQFEGIIEERYSHYKEIAKEEVIDLYNHMLASNVVGQQRAKKDVSIGLLKKN
                     TLTNNSPLVMLFYGSSGVGKTELAKTMSEYFNGKLTRIQFSMMQTEEAYKYIFGDAHS
                     KGSLAKDLLSRETNIVLIDEFDKVNSSLYNVFYQMFDEGELEDINYSVDVSNCVFILT
                     TNFNNDKEMAEKLGLPIFSRIDLKIEFQNLTDSELLHIIDNIFENVISRLSEEEKNII
                     ENS"
BASE COUNT         8465 a         4983 c         5999 g         7169 t
ORIGIN      
        1 aacctcctca agacatcacc tttcgtgaag aaggggggat cgtcattgca agtcttgagg
       61 aagatttatc acaactagat ttacgaacag ggcaaacaga acatttatcg gcttatgaac
      121 atctaaactt gtcccaaaaa tttgagatat taagtcactt tgaccaagtg cgaaatagcc
      181 gtccaaagct accaaacctg agacgtgggg agtttgatca tgagatggaa atgacgccaa
      241 tctatgcgga caatgagcta ttaacctatt tagaagctaa tgggaccatc tatgacttac
      301 aacgtccttt aacacctcaa caagaagtga tcttaactga aatgagtcaa accattttgg
      361 gtgaaaatac cgaaaaactg actcgtttag gaatagactt agctgacgtt gacgagcaac
      421 aacgtgggat actgatagat gctgcagggc gttttcattt gaataatgcc gacctagcct
      481 tattaggggg ctatcctaag gcaaccgtca ctcaattagc ccttgcgaca gaattgcttc
      541 agatgggatt aacgcatgac aaggcagaat ttttcttgac cagtcagcta gacttagaag
      601 aagcaagacc cattgcctac gccttcttgc atgaagacct tactcttgaa gaagttagaa
      661 cctttgaaag ggacaaactg tcccaacctg acctatcctt tagggaatgg cgagaacaca
      721 tctcacaaac aaaacctgaa atcatgactc aatcactccc tcaaaatcct atcgtagagg
      781 aagcccttaa acgctatccg attgcttcga ttgtgactta taaggggcaa gagtttcagg
      841 taatggccat tgaggactca ggcgttaata acctgattcg gattgaatta caaaatgatt
      901 tcacagatgt gattgaacaa aatccagttc ttttcttacg gacactagaa gacatcactc
      961 aagctcttca tgttccttct gtcgaagaaa aagaggaaat ggaagaaact cagcaggaat
     1021 ttgacctctt ttccttcatg gatatggaag aatctcaaga gccggtttct caaatgacgg
     1081 cttctgtacc atcaaataag ggagaggcta aacaagaaga agcattgtcg gaagatgagt
     1141 tggaaccaaa agtcattaag acgcccccag ccactgattt tcactttcca gaagatttga
     1201 cagactttta ccctaagaca acaagggata aggttgaaac taacgtggct gctgttcgtt
     1261 tggtgaaaag tcttgaatct gaacaccgtc aagccacacc aagtgaacaa gaactccttg
     1321 ccaaatacgt gggctgggga ggacttgcta acgagttttt tgacgagtat aacccaaagt
     1381 tttctaagga acgtggggca ttaaaaacgc tagtcaccga taaagagtat tcggacatga
     1441 aactatcttc tttgacagct tattacacag accctcactt gattcgtcag atgtgggaga
     1501 agttagaacg tgatggcttt actggtggta aaatcctaga cccgtctatg ggaacgggga
     1561 atttctttgc ggcaatgccc aaacacctga gagaaaatag taagttgtat ggtgtagagt
     1621 tagacacgat tacaggaact attgccaaac accttcatcc gaatagtcac attgaagtaa
     1681 agggctttga gaccattgtc tttaatgaca atagctttga tttggttctc tcaaatgtgc
     1741 cttttgccaa tatcaggatt gcggacagtc gctatgacaa gccctatatg attcatgact
     1801 attttgtcaa aaaatccctt gatttggtgc atgatggtgg gcaagtggct attatttcct
     1861 ccacaggaac catggacaaa cggacagaaa acatcctcca ggacattcgt gagatgactg
     1921 attttctcgg tggtgtgcgt ttaccagata acgcctttaa ggccattgca ggtaccaatg
     1981 tcacaacaga catgttgttc ttccagaaac atatggataa gggatatgtg gcagatgatt
     2041 tagctttttc aggttctatt cgctatgaca aggatgaccg tatttggctc aatccttact
     2101 ttgatgggga ctacaacagt caggttcttg ggagctatga ggttagaaac tttaacggtg
     2161 ggacactttc tgtaaaaggc acttctgata acctaataga agctgttcag acggctctta
     2221 aacaagttaa agcgcctaga agtgttgacc cttctgatat ccttatcact cctgatgtga
     2281 tgagaagaca agtcattgat acctctgttc cgcctgaaat cagagaaagc ttagaccagt
     2341 atagctttgg ctataaagat tctacggttt actaccgtga tcataagggc attcgtgtag
     2401 ggacaaagac agaggagatt agctactatg tggacgagga ggggaccttt aaggcatggg
     2461 acaccaagta ttctcaaaaa cagattgacc gttttaatgc tttagaggtg actgatagca
     2521 ccgctcttga tgtgtatgtg acagaagaag ccgctaaacg tggacaattt aagggctact
     2581 tcaaaaagac tgttttctat gaagcgcctt tgtctgagaa agaagtagca cggattaaag
     2641 ggatggtcga tattcggaac gcctaccaag aggtgattgc cattcagcga tactataact
     2701 atgataaaga cgagttcaat cacttgttag gacatctcaa tcgcacctat gatagttttg
     2761 tgaaacgttt tgggtacttg aatagtgctg tgaaccgtaa tctctttgat agtgatgata
     2821 agtattcgct ccttgcgagt ttagaagatg aatgccttga ctcaagtggt aagactgtta
     2881 gttataccaa gtcgcttgcc tttgaaaaag ccttggttcg tcctgaaaag gaagtgacgg
     2941 cagtttcttc tgcccttgac gctctaaatt ctagtctagc agatggtcgt ggggtcgatt
     3001 tggattacat gatgtctatt tatcaaacag actctaaagc gtctttgatt gaagaattag
     3061 gagacgctat tattcctgac ccagaacgct atctaaacga tagggaagtg gtctatgaat
     3121 ctcggaagga tttcttatca ggggatgtga tgactaagtt agaggtcgtg gacttactca
     3181 ttaaagaaga caattctgat tttccgtggc aacactatca aaacctctta gaagacgtga
     3241 aaccaccacg tgtgacctta gctgatattg attatcggat tggctcacgt tggattcctc
     3301 tagccgttta tggtaaattt gcccaagaaa cctttatggg acaaactttt gacctgactg
     3361 accaagaagt atcaactgtt cttgaagtca gtccgattga tgggacgatg tcttaccaat
     3421 ccaagtttgc ctttaggtat tctaccgcaa cggatagaag tctaggtgtg cctgggtcac
     3481 gctatgatag tggccgaaaa atctttgaaa acctgcttaa ttccaatcaa ccaaccatca
     3541 ccaaacaagt ggaagatggg gataagaaaa agcatgtgac agatgtggag aagacaacgg
     3601 ttcttcgtgc taaggaaact gagcttcaag aactcttcca agactttgtg gcaagttacc
     3661 cagaggtgca acagatgatt gaagaaacct ataatagcct ttataatcgt acagtttcaa
     3721 aagtctatga tggcagtcat ttaaccattg atgggcttgc ccagaatatt tccttacgcc
     3781 ctcaccagaa gaatgccatt caacgcattg tggaagaaaa aagagcgctt ctagctcatg
     3841 aagtgggttc aggtaagacc ttaaccatgc ttggggcagg cttcaaactg aaagaactcg
     3901 gaatggtgca taagcctctt tatgtggtgc catcaagtct gaccgctcag tttggccaag
     3961 aaatcatgaa gttcttccca acgaagaatg tttacgtgac gaccaagaaa gattttgcga
     4021 aagccaaacg taagcagttt gtctcacgga tcatcacagg ggactacgat gccattgtca
     4081 ttggggattc ccagtttgaa aaaattccca tgagtcagga aaaacaggtc acctatatcc
     4141 aagataaact gaaccaatta cgagaaatta agcaaggtag cgacagtgat tatactgtaa
     4201 aagaagcaga gcgttctatt aagggattgg agcatcaact agaagaactc caaaaactgg
     4261 agcgagatac ctttattgaa tttgaaaatc tgggcattga ttttctcttt gtggacgaag
     4321 ctcaccattt caagaatatc agacccatta caggcctagg taatgtggca ggaattacca
     4381 acacgacttc taaaaagaac gtggatatgg agatgaaggt gagacaggtt caaggagaac
     4441 acgactatcg taatgtggtc tttgcgacag gaacgccagt ctctaactct attagtgaac
     4501 tctataccat gatgagctat attcaaccag atgtcttaga acggtatcaa gtctcaaact
     4561 ttgactcatg ggttggagct tttgggaata tcgaaaacgc tatggaacta gcaccgacag
     4621 gggataagta ccaacctaag aaacgcttta agaagtttgt gaacctgcct gaactcatgc
     4681 ggatatacaa ggaaactgcg gacattcaga cctctgatat gcttgattta cctgtccctg
     4741 aagctaaagt tattgcagtg gagagcgaac tgacagaagc tcagaaatat tatcttgaag
     4801 agttggttga ccgttcagac gctatcaagt ctggtagcgt tgaccctagt gtcgataaca
     4861 tgttaaagat aactggggag gctagaaaac tagctattga catgcgtctc attgacccag
     4921 cctatacctt atcggacaat cagaagattc ttcaagtagt ggataacgtg gaacggattt
     4981 accgtgaggg agaaaatgag aaagctaccc agatgatttt ctcagatatt ggaacgccta
     5041 agagtaagga agaaggcttt gacgtttaca atgaattgaa agacctttta gtggatagag
     5101 ggattcccaa agaagcaatt gcctttgtcc atgacgctaa tacggatgac aagaaaaact
     5161 ctctgtcacg caaggtcaat agtggagaag tacggattct catggcttct acggaaaaag
     5221 ggggaacagg attaaacgtc caatcacgta tgaaagcagt ccaccattta gacgttccct
     5281 ggaggccgtc tgatgtagga cggattttgc ggacattcaa aataaaaaag aatgtggagg
     5341 taacagacaa tggcaaagac aatttttgag gaaatgggcg gcaaatacga aaggcaaggc
     5401 gattatttaa taccgtgctt aactgtaccc gccgaagaag aacagccgat aggcatctgg
     5461 ggacagcggc atttggatta tctgaagcat cactgcaaag ttacatacac caatcttctt
     5521 acaagcggca ggctaaacgc ctaccttgcc gacatcaaca gacaggcaca ggaacgcttt
     5581 gaaaggctca tagagggtat gaaacaggca cagggcataa cggctaaagg cagaaaacgc
     5641 cttagaatgg acaggatgcc tcaataacat aagggcttgt gcgagggaga ttgtggaaaa
     5701 ggaaattatt tttgcataaa cagatgatta gtggcagggg gaaatcctgc cgctttttct
     5761 gctttagttt gtcagcttga caaataaagg gttaaggaat ataattagat tcagtattat
     5821 acaaggagtt aataaatatg cggcaaggta ttcttaaata aactgtcaat ttgatagtgg
     5881 gaacaaaaag tagcagtccc gtttcacttt taatatgggg cttggttttt tgtacccagt
     5941 ttaaaaatgc ttttatcatg taattttata tgcccgaaaa catataagtg ttttggggct
     6001 attggagtta tttacccagt gataggagta tttatcactg ggtattttta tgcccttttt
     6061 tgggtgttga taggaggaaa atcacatgaa aataattaac ttaggcattc tggctcacgt
     6121 tgacgcagga aagacaacat taacggagag tttattgtat accagtggtg caattgcaga
     6181 accagggagc gtagataaag gcacaacaag gacagataca atgaatttgg agcgtcaaag
     6241 gggaatcact atccagacag cagtgacatc ttttcagtgg gaggatgtaa aagtcaacat
     6301 tatagatacg ccaggccata tggatttttt ggcggaagta taccgttctt tatccgtatt
     6361 agacggagca gtattattag tttctgcaaa ggatggcata caggcacaga cccgtatact
     6421 gtttcatgca ctacagacaa tgaagattcc gacaattttt ttcatcaata aaattgacca
     6481 agaggggatt gatttgccaa tggtatatca agaaatgaaa gcaaagcttt cttcggaaat
     6541 tatagtgaag caaaaggttg ggcagcatcc ccatataaat gtaacggaca atgacgatat
     6601 ggaacagtgg gatgcggtaa ttatgggaaa cgatgaacta ttagagaaat atatgtcagg
     6661 gaaaccgttt aaaatgtcag aactggaaca ggaagaaaac aggagattcc aaaacggaac
     6721 gttatttccc gtttatcacg gaagtgctaa aaacaatctg gggattcggc agcttataga
     6781 agtgattgcc agtaagtttt attcatcaac gcctgaaggt caatctgaac tatgcgggca
     6841 ggtttttaag attgaatatt cagagaaaag gcggcgtttt gtttatgtgc gtatatatag
     6901 cggaacattg catttgaggg atgttattaa aatatctgaa aaagagaaaa taaaaatcac
     6961 agagatgtgt gttccgacaa acggtgaatt atattcatcc gatacagcct gctctggtga
     7021 tattgtaatt ttaccaaatg atgttttgca gctaaacagt attttgggga acgaaatgct
     7081 gttgccgcag agaaaattta ttgaaaatcc tctccctatg ctccaaacaa cgattgcagt
     7141 aaagaaatct gaacagcggg aaatattgct tggggcactt acagaaattt cagatggcga
     7201 ccctctttta aaatattatg tggatactac aacgcatgag attatacttt cttttttggg
     7261 gaatgtgcag atggaagtca tttgtgccat ccttgaggaa aaataccatg tggaggcaga
     7321 aataaaagag cctactgtta tatatatgga aagaccgctt agaaaagcag aatataccat
     7381 ccacatagaa gtcccgccaa atcctttctg ggcttctgtc gggttgtcca tagagccgct
     7441 ccctattgga agcggagtgc agtatgaaag cagagtttca cttggatatt taaatcaatc
     7501 gttccaaaat gcggttatgg agggggttct ttatggctgc gagcaggggc tgtatggatg
     7561 gaaagtgaca gactgtaaaa tctgttttga atatggattg tattatagtc ctgtaagtac
     7621 ccccgcagac tttcggctgc tttcccctat cgtattggag caggctttaa aaaaagcagg
     7681 aacagaacta ttagagccat atctccactt tgaaatttat gcaccgcagg aatatctctc
     7741 acgggcgtat catgatgctc caaggtattg tgcagatatt gtaagtactc agataaagaa
     7801 tgacgaggtc attctgaaag gagaaatccc tgctagatgt attcaagaat acaggaacga
     7861 tttaacttat ttcacaaatg ggcagggagt ctgcttgaca gagttaaaag gataccagcc
     7921 agctattggt aaatttattt gccaaccccg ccgcccgaat agccgtatag ataaggttcg
     7981 gcatatgttc cacaagttag cttaacagct tgcaaaagtc atataaaatg agatttgaaa
     8041 ggattagaga ctaattatga tgaaatgcga atggatattg tgtcctgttt gtgggagcaa
     8101 aacccgtaat aaaattagga aggacactgt tttggagaat tatccccttt attgtccaaa
     8161 atgcagacaa gaaagattga ttaaagttga caacttgaag ataactgtca tcaaagagcc
     8221 agacgcttaa gacgcagagc cgatgaaatt gtggaacaat tcacgaatca tcggctcttt
     8281 ttgtttcgta tttgaaagaa caaactcacc aaataaaaaa aacgatattc gggtgggtta
     8341 ttttgttata ccctaaatta ccctctgaat ttgtttttaa atttggaggg atttttttat
     8401 gtcctttttt cgggcagtta tctatctgct catacgaagc aaaatttatc aatacatagc
     8461 atatcagaga acggcaggaa accagttaaa aaaatttctg ccagtgcaac ggtacttctc
     8521 accttgaaag tagaagtaca atctccatac aatagaatta ctatttccta taaccgtaaa
     8581 ggtcacagag cctttgcggt ttttcttttg tcgatttttg ttggaaagtg ccgtagggct
     8641 gtttctgata tgcggtgtcg ttctccgcct ctccatctgg attttttaca tttcaaaaat
     8701 tcagatggga ggtatttatg gtgaaatatg caccaagaaa ggtatatatc agagaaagtg
     8761 gcggctatgt ggaattatcc tacacggagt tctgccgttg cagggaatcc gaccagacct
     8821 atatggacaa gctgtttatc cccattcaag gctgtctgct tgaagtcgtg agggagcaat
     8881 acacagactt ctaccgtgac aaggaacggt ggcgttatct gcaaaaatta gatacaaaga
     8941 atagactgct atctctcgac ggatttacgg acagcgaggg gaatcctctg gactttatca
     9001 ctgatgaagc ggtggacatt gcagaaaccg ttgtcaatgc ggtcatggtg gacaggctga
     9061 aagccgccct gcctttgctg tcggatagtg aacaggagct gatacaggca atcttttttg
     9121 acggactttc cgagcgtgaa gtcggggcga ggttgggcat aacccagagc gttgtaaaca
     9181 aacgcaaagc cagaatccta ataaaactaa gaaagataat agaaaattaa aatttaaggc
     9241 gttcagcccc cttgtttttt cctttgggaa gatgaggggg cttttctctg ccctctcaat
     9301 caattctgat tggaggaagt aagaatggca tacaaccacg gacgggagga caggaaatgg
     9361 cgtatctgga aagaagcgga ggaaaagctg ctgcgtgagt gcggcgttga tgaagcgacc
     9421 attgagcaga tacgcatggc ggacagggca gacttcaatt ccaacaggcg gttttaccga
     9481 tggacgaatg acgttgcgga atatcttgag gacatggcag gcagggagcg gcaggcggaa
     9541 gtgggtacgg ttgcggagtt actggaagag attgagagcg aaaatctcta tcaagtatta
     9601 gtcacggtgg acgggcgtac cttgaaaatc gtcctgctga aaatgcaggg gtattccaca
     9661 aaggagattg ccccgcttgt gcatttgacg actggtgcca tctatgcgag gttagaccat
     9721 ctgcggaaga agctgcggaa aattttatag cttctaaaac agcctgccat cctgcgggct
     9781 actgggtgag ggatggaaat cccctcactc attttttgca ggaggacaac aggatggcat
     9841 acagggttaa ggcatacacg cttcgggagg aatccacgga aagcggcaca aggtatttta
     9901 tcagctttaa ggacgggcag ggcaaatccc acgagttgga agtgtcggaa cagttcttta
     9961 tggagtttcg gcagatggag cgcaggaaca ggaatctttt ctaatgggac gagcggcaca
    10021 gggagtttaa cgaggtatgg gacgaaaccc tttacagacg ggcgttgcgt gtgcctaaga
    10081 gccttgatga acgcatggtt gaggaagaac ggaatgaaac gctctataag gcggttggga
    10141 gccttccaga gatacaaagg cggcgtttcc tgctctacta cgagtatgag ttcaattttt
    10201 accaaatcgc cgctatggag cattgcaccg cttcggcaat acagaaatct gttgcgattg
    10261 caaaggagaa agtaaaggcg gaaattgaag aaatatctcc aaccgtgacc gacaccgccc
    10321 gaaaaagaaa tctgtttttt atttgtgtgg gattggcggc attacatact ctcacttttt
    10381 tccgtgggag taaatctatt tttaaggagg tcaacgccta tgtgcaacga aaacaaagac
    10441 accgcccgaa aggaggaaag ccatgcagaa gttacagaca gtcaacgccg aaacgctcct
    10501 ttatgaaccg cttgagaaac catcctttgt ggtggacagc cttatcccga caggcttatc
    10561 gctgttctgc ggctcacaga agataggcaa aagctggctc atgctgaagc tatgcttatg
    10621 cgtgtcgcag ggaatccctt tatgggatat gccgacaatg gagggcgatg tgctttacct
    10681 ctgccttgag gacacgttct gccgcataca ggacaggtta tttcgtttga cggacgaagc
    10741 aagcgggcgg ctccactttg ccgtggcaag ctgcaagctg tcagacggtc ttatcgtgca
    10801 gcttgaagat tatctgaaag attacccaga cagcaggctc attgtcattg ataccttgca
    10861 gaaagtccgt acagcttcaa aagacaatgc ctatgcaagc gactatgggg acatctccct
    10921 catcaaagac tttgccgaca ggcactctct ggcggtcatt gtcgtacacc acatccgaaa
    10981 gcagaatgac agcgacgtgt tcaacaaggt gtctgggacg acaggattaa cggggagtgc
    11041 ggacgctacc tttgttctgg aaaaggagaa acgtgcgtct gacaccgcca agctgtatgt
    11101 gacgggcagg gacacgcctt atcaggaata cacgctgcgt ttccgtgatt gccgttggga
    11161 gcttgtggag cggaaaacgc aggagcagct tgcgaaagaa acgataccag atgtcctttt
    11221 tcggttggtg gattttatga gggataagga agaatggata ggcacggcaa cggaactgtt
    11281 agccgctatg ggggaaacgg aaaccatacc cacggtgatt acgaaatggc tgaatgaata
    11341 ccgcaccaca tttttaagcg agaaccgtat ctgctaccag tacagccgca ggaaagacgg
    11401 caggcggatt gcccttgcaa ggagggcggg tgacagcggt gatggtggtg acagcgatat
    11461 taggataccc ccctgttact gtcattgacg cttaaagcca tgtaaagctg gcggctctgc
    11521 cctgcgggtg acagcagtga cggtggtgac agtgatttta ggataccctg ccgctgtcat
    11581 ccctacggga gaacaccccg taaacgcaaa atgcaggcgt gagatttact cgcccttttc
    11641 ggtcgtgtaa aaccacccct gcggtcagaa aaatcattcc gatttttccg actgcgttta
    11701 cagggtgtaa cacactacac tttgccctgc aaagtcgtgt gccagacgtt ccctctggac
    11761 tcccttaagg cagggctgtg ccctgctatc ctacgcctta cggcttcgga taaaagaatg
    11821 gcggcatgac ggtgacggct cttgcgaggg gggtatccca aaaacaccgt catcatcgac
    11881 atgaccgtca tgcagggggt gagggtgaca gttgcggcag tcggcagggg gtatcccaaa
    11941 actgctgtca ccaccgtcac cgctgtcacc ccaaaggacg gtcacccgcc gaaagaaagg
    12001 aggaatccgc ctatgcctta tgcaatcctg cgtttccaga aacgaaaagc gggcggcgtt
    12061 gcggcttgtg aacgccacaa cgagcggaag aaagaagcct acaaaagcaa cccagatata
    12121 gatatggaac gctctaaaaa caattaccat ctcatagcac caccaaagta cacctacaag
    12181 aaagagatta accgcatggt agccgaagcg gggtgcagga caaggaaaga cagcgtgatg
    12241 atggtggaaa cgctcatcac agcttcacca gaatttatga accagttacc gcccgaagaa
    12301 caaaaagcgt atttccagac ggctcttgac ttcatttcgg agcgtgttgg aaagcagaat
    12361 atcctctccg ctgtcgtcca tatggacgag agaacgcccc atatgcacct ctgctttgtg
    12421 ccgattacgc cagacaataa gctgtcagcg aaagctatct taggcaacca gaaatcatta
    12481 tccgagtggc agaccgccta ccatgagcgg atgtcctcac ggtggaatca gcttgaacgg
    12541 gggcagtcct caatggaaac caagcggaaa cacgtcccca catggctcta taaattaggc
    12601 ggcaggcttg ataaacagta tgaagaaatc gtgtctgccc tatccgacat caacgccttt
    12661 aacgcaggga agaaaaggga taaagcgtta gatttactct ctgcatggct gccagacgtg
    12721 gagaaattct ctaaggaaat cgggaaacag caggcgtata tcgacagttt gaaagagaga
    12781 attgggcagg aatcagacta tgcggggcgt atgcgtgatg aaaagtacga gcaggaacta
    12841 aaggtgcaga aagcgaatca gaagatattt gaattgcaga gaaccaacga gcagatgggg
    12901 cggctgctgt caaaaatacc gcccgaagtg ttggaagaat tgcagaaaaa tcatagaagc
    12961 agagcgaaag aaaggtagat atgtgaatga agaaacagga ttttaaggtg ttaaagacca
    13021 aagacttgta cccgttcccc gacaatccgt ttcatgtggc agaagatgaa acactgtcag
    13081 agttagcgga aagcatcaag gaatttggca ttgtcacgcc gataatcaca cgcccgaaag
    13141 aggacgggga cggttatgaa gtgattgcag gacagcggcg tgtccgtgct tctgaacttg
    13201 cagggataaa taccgtgcct gcgtttgtcc tgcccttaga ccgtgaccga gccatcatca
    13261 cccttgtaga cagcaatttg cagcgtgaga atatcctgcc atcggagcgg gcgtttgctt
    13321 acaagatgaa atccgaagcc atgaagcggc agggtttccg cacagactta acctcgtcac
    13381 aagttgtgac gaagttgcgg acggacgaca aggtggcaca gggcttcggc gtgggcagga
    13441 tgaccgtgca gcgttttatc cgcctgacgg aactgatacc gccgattttg cagatggtgg
    13501 acgaggggaa aatcgccctc acgcctgcgg tggaactgtc cttcttgaag aaagacgagc
    13561 aggaaaacct ctttgccacg atggagagcg aagaagcaac gccctcactc tcacaggcac
    13621 agcggatgaa acagttaagc cagagcgggc ggcttgacat ggatacgata tttgcgatta
    13681 tgacggagga aaagggcaac cagaaagaaa ccttgaaaat caacacaagc aagctgaaaa
    13741 aatactttcc gaagaacaca acgccgaagc agatggagga aaccatcatc aaacttttgg
    13801 agcgtgagtt gcagaggaaa cgcaaccgtg acagccgcta atcttctttt ttcgggaagt
    13861 aaatacagag agttgaggta tggagaatga gagaaatcca gtatgaaatc gtaaaggaaa
    13921 tcgcagtatt gtctacgggc gacagtggct acacaaagga aatcaatctc atttcatgga
    13981 atgggaaaga gccgaagtat gacatccgca gcttttcccc gaaccgtgaa aagtgcggca
    14041 agggaatcac gctgaacgct gatgaagcgg cggcactcct taaagcatta cagaaagaat
    14101 taaacagcga ggattaatgg tatctgattg gcagggcggg gacatttcca aactcttccc
    14161 tgccctgtct ggaaaggaag atttaagtat gggcgaggat aagaaagcag ataaaaagag
    14221 aaagcgtatc gtgccaaaag caccagtgca gatgataatc agccgtgaat atgtcggcac
    14281 acagaccgtt acagaagcgt ttgtcccgat tatctccgag gatattcgga agaagattgc
    14341 cgagggcgac accttcgaca atgaggggct gtccgcttag aatgtacgca atgggacatg
    14401 aaaacagata ggacagatac ggaggtttta cagtatggca ggaatcaaag aagaaaagaa
    14461 aatctattta gtcggcattt attgccgctt atctaaagac gatggtacgg ataacgagag
    14521 tgcgagcatt gcgacacaga aatccatcct cacggattat gtgaaaaagc agggatggca
    14581 catagcaaaa acgtataaaa gccctcttta aagggctttt atgtttattt tgagaaagat
    14641 ataaaatcaa tatatccctt ttctccgatt tttacaacgg cattgtagga ctttctatct
    14701 ttcgttttga ttccttttac cagggtttct tttccctcta gtaattcttt tacatttgtt
    14761 ttggtgagtt ttttctttct aaaatgttca gctaaagtga aggtacattc aggataattt
    14821 gaacaaccat aaaacgattt ttttaataca atattgttgc cacacttagg acattttcct
    14881 acaaggggtc ccgagcgctt agtgggaatt tgtacccctt atcgatacaa attccccgta
    14941 ggcgctaggg acctctttag ctccttggaa gctgtcagta gtatacctaa taatttatct
    15001 acattccctt tagtaacgtg taactttcca aatttacaaa agcgactcat agaattattt
    15061 cctcccgtta aataatagat aactattaaa aatagacaat acttgctcat aagtaacggt
    15121 acttaaattg tttactttgg cgtgtttcat tgcttgatga aactgatttt tagtaaacag
    15181 ttgacgatat tctcgattga cccattttga aacaaagtac gtatatagct tccaatattt
    15241 atctggaaca tctgtggtat ggcgggtaag ttttattaag acactgttta cttttggttt
    15301 aggatgaaag cattccgctg gcagcttaag caattgctga atcgagactt gagtgtgcaa
    15361 gagcaaccct agtgttcggt gaatatccaa ggtacgcttg tagaatcctt cttcaacaat
    15421 cagatagatg tcagacgcat ggctttcaaa aaccactttt ttaataattt gtgtgcttaa
    15481 atggtaagga atattcccaa caattttata cctctgtttg ttagggaatt gaaactgtag
    15541 aatatcttgg tgaattaaag tgacacgagt attcagtttt aatttttctg acgataagtt
    15601 gaatagatga ctgtctaatt caatagacgt tacctgttta cttattttag ccagtttcgt
    15661 cgttaaatgc cctttacctg ttccaatttc gtaaacggta tcggtttctt ttaaattcaa
    15721 ttgttttatt atttggttga gtactttttc actcgttaaa aagttttgag aatattttat
    15781 atttttgttc atgtaatcac tccttcttaa ttacaaattt ttagcatcta agctttaatt
    15841 ggtttaataa attgacttcc aataattgag agtcattttt atttaattca tgattcaaaa
    15901 catagtttaa tactcgatta taaacgcttg ccgataattc gttaatgatc tctatttcaa
    15961 atgttttttc ataagtaact gccatttcat tttcactcct tttaaagttt gtcaggtaaa
    16021 tatttccgaa tatattcttc taaggcttta tccataactt cttttacgtt tccgccattc
    16081 tttgctgttt cgatttttat aatatggtgc aagtcagcac gaacacgaac cgtcttatcc
    16141 cccataatat ctttttttgc actgattggt gtatcatttc gttttgcttt ttgtgcgcct
    16201 aaatttccca caaccactca cttctttcta tttcttctta ctcttatttt atcatcaaca
    16261 atcacaaatc acaagtgatt tgtgattaat cacttgtgat ttgtgattct attctttttc
    16321 gttttctaat tgaatgattc gctcaagcat ttcaaaaaat acgttctcat acatagataa
    16381 aacttttttg tcatagcctt tgtgttctgt aatgccgttt ttagaccagg tacttacttt
    16441 attacttcgc ttgataatat tttagaaaac caagttatct tctttatgtt gcttgtacag
    16501 ttcttccagg tttgatttta tcgttgtgct gtccgtatca actaaataag gaacaaaacc
    16561 gatcatatct agtccagggt taaactgttc ttgtaaatca atcaaatagg aaatatagtt
    16621 ttgaatgttg tttgtacttt cttcttctgc ttgtaaaggg atcatgacgt aatcacttgc
    16681 cacgattgca ttatttgtat aaacgcttgg cgttggtaca gtatcaataa taatgagatc
    16741 atagtcactt tttaaaggtg ctaaaagagt agcaagcaat ctactttcat tttcaaaagt
    16801 ccatgagcga gttaattttg gcagtaacat caaatcaaac gtgccaggga tcaagtctaa
    16861 attatcagtc aaatgaacaa tagaagaagc caagtttcca tttttcagtc cttcataaaa
    16921 attaacacgt ggcaattcta ccttaaatgt ttttgctaag tcttttgtca atgttgcttg
    16981 taagtcctta tcgatcatta aaacttttaa attaaatttg tctgtcaagt aagcaaacat
    17041 agtcgataat tttgactttc caacaccacc tttaaaataa ttgtttaaga taacaatcgc
    17101 ttcattttta ctgtttaaaa tacgtcttaa ttcttcaagt attttgagtt cttccttctc
    17161 cataactacg ccccattctt tttttgtata gtaatattgt atcattagga atcacaaatc
    17221 acaagtgatt tgtgattaat cacttgtgat ttgtgataag tgatttgtga ttaatatatg
    17281 tggacgatgg ttattctggt acaaatttcc aaagaccaag tttccagaat atgataaaag
    17341 acattgaaag cggtctgata aactgcgtga ttacgaaaga tttatcccgt ctggggagaa
    17401 actatcttga ttgtgggtta tatctggaag ttttcttccc agagcataac gtgaggtata
    17461 tagcggtcaa tgacggcgta gataccttga ataaatctgc tatggacatc acgcctttcc
    17521 gcaacatttt aaacgaaatg tatgccgctg acatatctgt taagataaaa tcggcatatt
    17581 gggcgaggtt tcaacagggg aaattcatgg gaactaccgc cccttatggc tatatcaaag
    17641 accctgccga ccacaaccat ctgctgatag atgataaagt ggcacatgtt gtaaaagaga
    17701 tattcgacct tgcattaaaa gggaatggag ttgccaaaat ttgcagacat cttaataaac
    17761 agcatatcct acgccctgcc gcttatgcgg cggagcgtgg cgaaacaggc tttgaacgtc
    17821 attttgaggg gaacgaggac aaacgctata tttggagtgg gaacagcgtg aggagcattt
    17881 taagaagccc gatatatgcg ggaaatcttg taggctacaa acggattgcc gccaatatga
    17941 aaagcaagaa acgcccctct aagctgcccg aagaatggga agtgataccc aatacccatg
    18001 agggaatagt cacgcaggag gaatttgaca ccgtacagca gcttatgacg agccgcaggc
    18061 gggagcagaa cgcaggggga tttgagaata tcttttcggg cgttatcaag tgtgcggact
    18121 gcggctatgc gatgcgggcg gcgagtgcca acaggaggaa acgccccgac atcatcgact
    18181 gcgtacaata cacctgcaat aattatggca gatatggcaa tgttatgtgt accgcacaca
    18241 gcattgaagc gagggactta ttcaatgccg tccttgccga catcaaccgc tttgcggata
    18301 tggcggtcaa tgatgaaaag gcggtcagag ccatagaaag gcggctcacg gaaacagacc
    18361 agagcagggc gaaatcatta gagaaagaaa agaagaagct gaacaaacgc cttgcggagc
    18421 ttgacaggct gttttcctct ctctatgagg acaaggtaat ggagcgtatc acggagcgga
    18481 attttgagat gatgtcgggg aaataccaga aagagcagct tgaaattgaa gcacggctga
    18541 aagaggtaac ggaaacgctc aatgacagct atgagaaatc gcagggcgtg agggactttc
    18601 tatccctaat ccgcaactat caggggctga aagagttgga cgcaaccatc ataaacgcac
    18661 tcatagacaa gatacttgtt tcggaacgtg agaaacttgc ggacgggaca gtaaggcagg
    18721 aaatcaagat ttactatgaa ttcatcggct ttgtcggtga attacatatc acacccacaa
    18781 agcggtggac ggcgttaaag cctaaaaatt gtacggtgtg cggtgttgaa tacgtcccca
    18841 gctctggaat atcaaagtat tgtcccgctt gtgctaagag gatacagagg gagaaatcaa
    18901 acgagagcaa acgcaggagt agggagagga accgaagggc atgtattgaa ctgtccgcaa
    18961 aaaatgaccg actgatattg tccagcgcaa tggtaggtta attcgtcaag gcaatatgca
    19021 ccaagaggta gatatctatc attatattac gaaagggagc ttcgataact acctttggca
    19081 aactcaggag aataaactca aatatatcac gcaaatcatg acctctaaag accctgtacg
    19141 gtcggcagaa gacattgatg aataaaccat gactgcttca gactttaagg ctttagcgac
    19201 aggtaatcct tatctcaaac tgaaaatgga actagagaat gagttgacgg tattggacaa
    19261 tcaaaagcgt gcctttaatc gctccaaaga tgagtatcgc cataccattt cttactgtga
    19321 gcagaacctc cctgtattag agaaacgcct tagccaatat gaccgtgata ttgcccaatc
    19381 tttggcaact aagtcacaag attttatcat gcggtttgac aatcaaatga tggataaccg
    19441 tgcagaagct ggagactatc tacgtaaact cattacctat aaccgttctg aaaccaaaga
    19501 agtaagaacg cttgcgacct ttagagggtt tgagcttaaa atggcaacca gaagtcctag
    19561 tgagcccttg ccagatatgg tgtctttaac catttcaggc agcaaccagt attctgtctc
    19621 tttagacttg aaatcagacg taggaacgat tcaacgcatt accaatgcca ttgaccatat
    19681 tctagatgac caagaaaaga cagaagagat ggctaacaat ttgaaagata agctatcagt
    19741 cgcaagagtt gaagtggaaa aggtctttcc aaaagaagag gattatcagc tggttaaagc
    19801 caaatatgat atccttgccc ccttggttga acaagaagca gaggttgagg aaattgatgc
    19861 agcactagcc aagttcaatg aaacgctcca accgcaacac gaccaacaac tttcgcttga
    19921 tttttaagaa aaaggctgac aaaaaatatt gaacgcggta aaatgacatt aagaaatcat
    19981 caaaggagaa ttgattatga cccagacagt agaagatata cgctaccaat tagaagaatg
    20041 gttagcacaa ggttttacaa gctccgaaga ccgagctaac tatcaagcct taaaggaaca
    20101 atatgaagat gaaacccttg attacagctt ttcaaagcga gaaatcattg gtcaattaga
    20161 agttattatc acgactcgtg agaatgattt tccagactta gatgaggtca ccaaagaaga
    20221 gtatcttgaa ctggttgaac aacttgataa tctagataag ggacaggcag actattatcg
    20281 caagcaatta gcgtagaaag aggtacagat atgattgaac aaattattca aagtcttttc
    20341 attatcgcag taacagggct gattttgctt gtcctttacc agattgcgaa gatgcttgga
    20401 agcttatttg tcattggttt aatcggattt ttagctttca cagaagtcta tggaatttac
    20461 ctctttttta cagaacgata cctctatgtg gaagatttag ccaccaatgg aattttcagc
    20521 tttaccactt tctatattat ttttaatctt ttacttgtct ttggacttgt tagaaaagtt
    20581 gttagaagtc ggatggcatg acgtaatggg attacctaag ttaggtagtc cttttcttta
    20641 ttgtgataac ttttccaagt ccatcttgtt atcatggtgc tatcttatgg aaaaaggaga
    20701 tagcactagt gatgttaaat aaaatgaagg ctcggctatt gattggttta ggaggtctag
    20761 ctgtgactag ctttatggtg atgatgggtt acaccattgg ttctcagtct gtcaccaatc
    20821 acacgcagaa acaaatccaa tcggaggcgc aaaaattact gaccaaagag aaagaaaaag
    20881 agaaggcaag tgtcctctct gatgagttag tcaaggaatt tctcacccaa tactatacta
    20941 aggaaaagct gggcgagaat aacaaccgta ttaaacccta tatgacagat tctgccttta
    21001 aggaagaggt agctcgtcaa gaagattcca tcaaccagat ctataaagac tatatgttgg
    21061 attatcgctt tgagtctgcc aatatctatg tcaatacaga agcaaatgaa gcttttgcgg
    21121 aagtgtctta tcaggttgtt tacgtgtcag aggtcagtga taaggctcag aaaagcacac
    21181 agacagaaac aagaactctt aaactatctt atgccaaaat gtcagataaa ctccttgtca
    21241 atcaggtaac catttggaat gggaagctag aggacttgaa agagtcttct gatggatctg
    21301 actcaagcat tccaaagatt caaggcacta ctacaagtga gaccaactag caggagttac
    21361 tcttctgctt tttttgataa ggagatggca tgacaagaat tgaaaaagtg aaacaaaagg
    21421 cgattttaga ggtggcagaa agtctaggtt attcttttaa acgactatca gggcaagtct
    21481 atgaacatcc agaacacgat tcctttagga tttttgcgga caccaatacc tttaaatggt
    21541 tttcacgtga cgtacaggga gatgtgattg attttgttca gttaatgaca ggagtgtctt
    21601 ttaaaaaagc cctgtcttac cttgaaactg gagactttga acaagctaaa atcgtcgaag
    21661 agacctacca accctttcgt tattatctaa gagaagaacc atttgaccaa gcacggatat
    21721 atctgaatga cattcgtggt ttaagtgatg acactatcaa tgcttttggc agacaaggtc
    21781 tattagcaca ggcccattac cagacaaaga cctttcaaga atcagtcctt gtctttaaga
    21841 gttacaatca tcaggggcaa ttagaagggg caagtcttca agggcttgtc aaaaatgctc
    21901 agagacatga tcgagattac ctcaagaaaa tcatgaaagg gtctcatgga tatgtgggaa
    21961 tgagctttga tattggaaaa ccgaaacgcc ttatcttttg tgaatcggta attgatatga
    22021 tgagttatta tcaattccat cagaagcagt tatcagatgt gcgtttggtt tctatggagg
    22081 gcttaaaact ctctgtgatt gcttatcaga cactaaggtt aacagcagag gaacatgaca
    22141 agctcaattt tttagataat atcaagccaa gtaaattaac gtattttctt cgtatcatac
    22201 aagaaacaac tgtctttttt cagaatcacc caggtttgat aacattagct gttgacaatg
    22261 atgaagcagg gcgaggcttt tgtcagaaat tatctgagaa aggacttccc attgaaactg
    22321 acttaccacc attacaggaa ctggaaacta aagcagattg gaatgatatt gtaaaatatc
    22381 aaaataatta ttctctaaaa gatgtaatcc aatcggccaa gttacaagtt atccgaaaca
    22441 atcctccgcc tagaaaaaat accgctttag agttgtgata acaaaatcaa gtttcttaga
    22501 ttaatctaga aagtgataag gaggacaccc tatgagtgtg attgaacgcc tagctgaaag
    22561 agtggctagg caagaggaaa aagttgcgaa agaaacggaa aaactagaaa cttatcgcag
    22621 tcaattacaa acagcgatgt atcaagcctt tatcaaacgc caacaaaaca gtccttggac
    22681 atttgatgaa gcattgacgc aagcctttgg ccaagatgaa caaaaactca aaccatcaga
    22741 taatagaaat gaggaataac acatgacaaa agactggacc tttgaccaac ccttagatga
    22801 taacacaccg acatcttcat cggaagaacg tgcgaagatt gcggcactat ttcataaaga
    22861 aaaccaagag ggcactgaag atgttgacta tgtggcagcc tttgaaatgg aacaacaaaa
    22921 atctaaaaat cagatggctc cacagcaaaa acctcaagag caatccacac caaaagaggt
    22981 gtcctcctca actattacaa acgactacaa gcaacatcta gctgatgtga tggctcagaa
    23041 taatgaagac attcgtcaaa gtcagaagaa aatagaagag ctacaccagt tgattgatga
    23101 caaaaataag caaaataaga aattacaagc catttcagta gccattgatg acttgtaagt
    23161 acgagcagtc cttaaacggg ctgcttttta tggggaaaga agatgaagtt atttaaaaag
    23221 caaacgcata atcaagatag ttttaagcgt cttattcatc gtttatcagg aatgtctgaa
    23281 gccgacttac ataaggtcaa ccaattacta gatgtcgttt ttgattcaac cagccaaacg
    23341 accaatgacg taaaagctcc taaagattta caaaaggagc ctaccctaga tgagactata
    23401 actgaagcta agaataaatt gaagactgag caactcgaaa aacggataga gcaatttagt
    23461 caggcgaaga aaccaaaaag cgaataacgc accaaaaatg gtgcgttatt cgctttttgt
    23521 gttataataa aagtaactaa taggaggaca ttagcaatga ttggagataa tatcaaatcg
    23581 ttacgtaaaa cccatgattt aacacaacca gaattcgcaa agattgttgg aatttctcga
    23641 aatagtttga gccgttatga aaatgggaca agctcgttat caacagagct catagaccgt
    23701 atctgtcaga aatttaatgt atcatatgtt gatattgtag gagaagaaaa aatgttaaca
    23761 ccagtagaag attatcaatt aaccttaaaa attgaagtta tcaaagagcg tggcgcagcg
    23821 attttgtccg aactatatcg ctatcaagat agtcaaggaa ttacttttga tgatgagact
    23881 agcccttgga ttttgatgag tgatgatttg tctgatctta tcaataccaa gatttacctt
    23941 gtcaatactt ttgatgaagt ggagcgttac aatggttatt tagatggtat tgagcgaatg
    24001 ttggagcttg ctaatcatca ggtggtggct taatgcggtt agaagaattt agcaaagatg
    24061 actttgactt agccttaaaa cgaactattc gttccttaac tcgtggtaaa acgacatcag
    24121 ttaccccaaa agccatctta cttggtgggc aaagtggagc aggaaaaaca acgatacacc
    24181 gtatcaagca gaaagagttc caaggtaata ttatcattat tgacggtgat agctaccgct
    24241 ctttacaccc gaattatcta actttacaag aagagtacgg gaaggatagc gtggattata
    24301 ccaaaggttt tgcaggaaaa atggtggaac agcttgtgga tgaactcagt aaacaaggtt
    24361 atcatttgtt aatcgaagga actttgagaa cgacagaagt cccacgaaaa acagcacgac
    24421 tattgaaagc gagaggttat caagtctcat tagctttgat agcaaccaag cctgaattgt
    24481 cttatctcag caccttaatc cgctacgagg aagtctatgc cgtaaaacca agccaagctc
    24541 gagcaacgcc taaagaacat cacgatggta ttgtagaaca tttagttgat aacttacgag
    24601 aattagaaac tgataaacta tttgaccaga ttcaaatcta tcagagagat agaacatgtg
    24661 tctatgattc tgaaatggat gatggtccag cggcagaagt gctactagaa tgcctctttg
    24721 gaaaatggaa taaggtggag gaagagatgt taagggatgt agaagagaaa atagctaatt
    24781 taaaggtaag caatgaatag gattgggagt aaaaaatgac tacaataaaa aaagtaattt
    24841 attttgatga atctaccgcg atggatttct tacagattga atcaaaagga aagttaacaa
    24901 aaacgactga gttaatgtct acattagagg gaggtgctga tgcacagatt attggggaag
    24961 tttcacttgg taaaaatagt gcactaaaga cgatttttga gaaaatggct ggtctaagtg
    25021 gtactgctag tatttcaagt tctggctcag gagctattca aggtaataaa atagcaaaga
    25081 ctattcttga aaattctctt ctatacgatt ttctagatac tgtagaatta aggaagaaga
    25141 attatcttgt tgatattaca gaaaactata ctttagaaat aagtgaaaac tcgatgtctt
    25201 attttgctat gattgcacca atttctgaaa tgatggaagg tagtcaaagt atagatggct
    25261 tggaaaatgt atctatgtca ttttctaaat tgaattctgg aatcagagag attaaaggtt
    25321 attttgagct cctaggctat aataaagctc atgagattga acggattttt cggtttaata
    25381 tcaattcttt caaaaataat tatcgtattc acgacttaac aaaaatgact cttaaacttt
    25441 attcaataaa agtcggagaa actactatta gtgatttaga ttttgagtca caatttagtt
    25501 tacggagaaa tcatttatct ttttctgctc tatcagagga tggaaatgtt gataagagta
    25561 tgaaatatcc agtttatgat gttatacttg caggggtgaa ttaaatggat agtattttac
    25621 tttttaaagg ttctaagaga gactttgata aattattaga ttcaaaagag attgaagatt
    25681 atactccatt tatggaacta attcgtcaat ataatatcac agtgagagcg aatgatgtaa
    25741 atgcatcgca atatattgca gatggctttg gtaaggaaca cattgaaaat gttgttattt
    25801 acgctgatga ttatgcttca gtaactgatc atgttatatc aaattttaat aatattgttc
    25861 ttttaggaca tgacattcaa aatctttata ttcaaaatcc tcccaagaga gttgaatcat
    25921 cattgagagt tcagtttgaa ggtattatag aagagaggta ttcacattat aaggagattg
    25981 cgaaggaaga agttattgat ttatataatc atatgctggc ttctaatgtt gtaggccaac
    26041 agcgagctaa aaaagatgtt tcaattggtc tattaaagaa aaataccctc acaaataatt
    26101 ccccacttgt catgttattt tatggaagct caggtgttgg taaaactgag ttagccaaaa
    26161 caatgagcga atattttaat ggaaaattga cacgaataca gttttcgatg atgcaaacag
    26221 aagaggcata caaatatata ttcggagatg ctcatagcaa aggttcgttg gcaaaagact
    26281 tattgtcaag agaaacaaat attgtcttaa ttgatgaatt tgataaggtg aattctagtt
    26341 tatacaatgt tttctaccaa atgtttgatg aaggggaatt ggaagatata aattattctg
    26401 tagatgtttc taattgtgta tttattttga caacaaattt taataacgat aaagaaatgg
    26461 cagaaaaact tggacttcct atattctcta ggattgattt aaaaatagaa tttcaaaatt
    26521 taactgatag cgaattgctt cacataattg ataatatatt tgaaaatgta atttctagat
    26581 tatcagaaga agaaaaaaat attatagaaa attctg
//
LOCUS       DASFRC010000009        24583 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.009, whole genome shotgun sequence.
ACCESSION   DASFRC010000009 DASFRC010000000
VERSION     DASFRC010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 24583)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24583)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24583
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.009"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(41..1390)
                     /locus_tag="U1087_000292"
     CDS             complement(41..1390)
                     /locus_tag="U1087_000292"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017648691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEM4754811.1"
                     /translation="MTHITFDYSKVLGQFVGAQEVEYMQPQVTLADQMLRQGTGPGSD
                     FIGWLDLPENYDKEEFARIKEAAAKIQNESEVLVVIGIGGSYLGAKAAIDFLSNAFVN
                     LQTREERKAPQILYAGNSISSSYLADLVDYVADKDFSVNVISKSGTTTEPAIAFRVFK
                     ELLVKKYGQEEANKRIYATTDKAKGAVKVEADANGWETFVVPDDVGGRFSVLTAVGLL
                     PIAAAGADIDALMEGANAARTTFTSDKIAENQAYQYAAVRNILYRKGYVTEILANYEP
                     SLQYFSEWWKQLAGESEGKDQKGINPTSANFSTDLHSLGQFIQEGNRNIFETVVRVDK
                     PRKNILIPDMAEDLDGLGYLQGKDVDFVNKKATDGVLLAHTDGGVPNMFVTLPQQDEF
                     TLGYTFYFFELAIAISGYLNAINPFDQPGVEAYKKNMFALLGKPGFEELGAELNARL"
     gene            complement(1472..2014)
                     /locus_tag="U1087_000293"
     CDS             complement(1472..2014)
                     /locus_tag="U1087_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754812.1"
                     /translation="MFLFAFPGMGKTTLAKKYTDVVDLEMSDIKYDNSSVRHLTKEER
                     KSTKRPLKDKRYKTIYVNKAYTLHRQGKTVLVALNFLMRMLLAMSIRGGVPFHIYIPH
                     PSLKEEYRQRYISRGNNDRFIFEVMFIWYPALIPLYLLSKILPKWITVTQSGETLEDY
                     YKRENFVRFSQKLRFIQHIS"
     gene            complement(2154..2243)
                     /gene="ffs"
                     /locus_tag="U1087_000294"
     ncRNA           complement(2154..2243)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="U1087_000294"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            complement(2287..2808)
                     /gene="tadA"
                     /locus_tag="U1087_000295"
     CDS             complement(2287..2808)
                     /gene="tadA"
                     /locus_tag="U1087_000295"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HEM4754813.1"
                     /translation="MNYTHEEKEYFMTQALQEARKSLEKDEIPIGCVIVKDGQIIGRG
                     HNAREELNQAIMHAEVMAIQEANNVEGNWRLLDSTLFVTIEPCVMCSGAIGLARIPQV
                     IYGATNKKFGAAGSLYDILTDERLNHRVKVETGILEAECANIMQDFFRQRRESQKAAK
                     LIMKTQEEAISDS"
     gene            complement(3089..5059)
                     /gene="tkt"
                     /locus_tag="U1087_000296"
     CDS             complement(3089..5059)
                     /gene="tkt"
                     /locus_tag="U1087_000296"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEM4754814.1"
                     /translation="MSNLSVNALRFLGIDAIEKSKSGHPGVVMGAAPMAYSLFTKELR
                     INPAQPNWVNRDRFILSAGHGSMLLYGLLHLSGFEDVTMDEIKNFRQWGSKTPGHPEF
                     GHTAGVDATTGPLGQGISTATGFAQAERFLAAKYNRDGFPIFDHYTYVICGDGDLMEG
                     VSAEAASYAGLQKLEKLIVLYDSNDINLDGETKDSFTEDVRARYNAYGWHTDLVTDGT
                     DVDAIFAAIEKAKVAGKPSLIEIKTVIGHGSPNKQGTNAVHGAPLGAEETEATRKALD
                     WNYAPFEIPAEVYADFKANVADRGAAAYDAWVKLVEDYKVAHPELAAEVTAILEGRDV
                     VEIKPEDFPVYENGFSQATRNSSQDALNAAAKVLPTFLGGSADLAHSNMTYIKEDGLQ
                     DSVNPLNRNIQFGVREFAMGTILNGMAAHGGLRVYGGTFFVFSDYVKAAVRLSALQGL
                     PVTYVFTHDSIAVGEDGPTHEPIEHLAGLRAMPNLNVFRPADARETQAAWYLSLTSKS
                     TPSALVLTRQNLTVEEGTDFDKVAKGAYVVYEAAGFDTILLASGSEVNLAVKAAKELE
                     VAGTKVRVVSVPSTELFDAQDAAYKEEILPNAIRRRLAIEMGATQSWYKYVGLDGKVL
                     GIDTFGASAPAQTVIDNYGFTVENVVKLVGEL"
     gene            complement(5271..6362)
                     /gene="ulaG"
                     /locus_tag="U1087_000297"
     CDS             complement(5271..6362)
                     /gene="ulaG"
                     /locus_tag="U1087_000297"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001863918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ascorbate 6-phosphate lactonase"
                     /protein_id="HEM4754815.1"
                     /translation="MAKVQDITRESWILSTFPEWGTWLNEEIEEEVVPEGNFAMWWLG
                     NCGVWIKTPGGANVVMDLWSSRGKSTKKVKDMVWGHQMANMAGVRKLQPNLRVQPMVI
                     DPFAINELDYYLVSHVHSDHMDISTAAAIINNPKLDHVKFVGPVESGDIWEKWGVPAD
                     RIIRIAPGDSFEFKDIKVHAVESFDRTCLVTLPIEGYDENGGKLAGLPVTDELMARKA
                     VNYVFETPGGTIYHGADSHFSNYFAKHGRDFNIDVAINNYGDNPIGIQDKMTSIDLLR
                     MAENLRAKVIIPVHYDIWSNFMASTDEILQLWKMRKERLQYDFHPFIWEVGGKYTYPL
                     DKDCIEYHHPRGFDDCFLEDSNIQFKALL"
     gene            complement(6472..8160)
                     /locus_tag="U1087_000298"
     CDS             complement(6472..8160)
                     /locus_tag="U1087_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator"
                     /protein_id="HEM4754816.1"
                     /translation="MLLDKSSCALLRYLIGLQEPETIMAISKGLQQSRRKIYYHLEKI
                     NDALPTTVESIESLPRLGIRLTEAQKLACRDLLDSIDSYTYVMSMPERIQLMLVYICI
                     TPERVTIERLMELTEVSRNTVLNDLNEIRTQLAQEQYKMTLYVSKSHGYSLVCHPLNK
                     IQYVHSLLYTIFLDANKGFLQVLEDKLFELVGCQLLFSEEMAQFLQGQVSQLEKKLGK
                     KINRYEIEFMLKVLPFLLLSYRNMELDDLEERAILKEFEQVRERIEYRVAQELKDALL
                     QTFDLKLDEIEISLIAILLLSYRKDSDVHVFSQDFIDLKRVVERFIHHFEIHSPFELE
                     NPDELAKHLLAHCKALLFRKTYGILSKNPMVQQIQDKYGTLFAMTRVSGKILEEEWQI
                     ELSDGDIAYLTIHLGGAIRRSGTRKAQTQIVYLICDEGVSVQRLLYKQCQHHLPDKKI
                     GAVFTTEQFKSVEDLLEVDFLITTSDGLETDFPLLQVHPILDFDDVLNMTHFAKYRSL
                     ADEKQVFAVELDKLLSGYIADGRTARELKQRLQKLITNELLTNLSSQDIETDLY"
     gene            complement(8285..8902)
                     /locus_tag="U1087_000299"
     CDS             complement(8285..8902)
                     /locus_tag="U1087_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754817.1"
                     /translation="MRKFLQDSLTEVAYYLELILSAILGLALLALSGLLLADLVGSLT
                     GGIQADNFIQSFLSKAMTLAVGVEFIKMLCKQSPSTVIEVLLVAIARQLIVEHGSSMD
                     YLIGIASVAILFAVRKYLFTQFDDSNNIIMRASQKVKVANIIARVKIPSEGSETLRDF
                     VTRKLNEEEKTIAIGACVYLKNVALRIDNMHGELITRVEIIKSIY"
     gene            complement(8985..9701)
                     /locus_tag="U1087_000300"
     CDS             complement(8985..9701)
                     /locus_tag="U1087_000300"
                     /EC_number="5.1.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001934215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase"
                     /protein_id="HEM4754818.1"
                     /translation="MPKDLQEMRQRVYEANIALPAHGLVKFTWGNVSEVCRELGRIVI
                     KPSGVDYEKLSPENMVVTDLDGNVVEGDLNPSSDLATHVALYKAWPNVHAVVHTHSTE
                     AVGWAQAGRDIPFYGTTHADYFYGPVPCARSLTAEEVNSAYEKETGSVIIEEFERRGI
                     DPVAVPGIVVRNHGPFTWGKDPAQAVYHSVVLEEVAQMNRYTEQINPRVEPAPSYIMD
                     KHYLRKHGPNAYYGQKGDEH"
     gene            complement(9701..10564)
                     /locus_tag="U1087_000301"
     CDS             complement(9701..10564)
                     /locus_tag="U1087_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 3-epimerase"
                     /protein_id="HEM4754819.1"
                     /translation="MARPIGIYEKATSKHFTWKERLEFAKELGFDFVEMSVDESDARL
                     ARLEWTKEERLDLVKAIYETGVRIPTICFSGHRRYPLGSNDPALEAKSLETMKQCIEL
                     AQDLGVRVIQLAGYDVYYEEKSPETRERFIKNLRQACDWAEQAQVMLAIEIMDDPFIN
                     SIEKYLAVEKEIDSPYLFVYPDTGNVSAWHNDIYSEFYLGHRSIAALHLKDTYAVTEN
                     SKGQFRDVPFGQGCVDWDNMFAVLKKTNYQGPFLIEMWSENCETVEETRAAIKAAQAF
                     LYPLIEKAGLN"
     gene            complement(10570..11232)
                     /locus_tag="U1087_000302"
     CDS             complement(10570..11232)
                     /locus_tag="U1087_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014622185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-L-gulonate-6-phosphate decarboxylase
                     UlaD"
                     /protein_id="HEM4754820.1"
                     /translation="MKHIPNLQVALDHSDLQGAIKAAVSVGHEVDVIEAGTVCLLQVG
                     SELVEVLRSLFPDKIIVADTKCADAGGTVAKNNAVRGADWMTCICSATIPTMEAALKA
                     IKEVRGDTGEIQIELYGDWTYEQAQLWLDAGISQAIYHQSRDALLAGETWGEKDLNKV
                     KKLVEMGFRVSVTGGLDVDTLKLFEGVDVFTFIAGRGITEAANPAAAAREFKDEIRRI
                     WG"
     gene            complement(11243..11728)
                     /locus_tag="U1087_000303"
     CDS             complement(11243..11728)
                     /locus_tag="U1087_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM4754821.1"
                     /translation="MNLQKSFTENNSIRLGLTAETWQEAVHKAVEPLIDSGAATEEYY
                     DAIIASTEEYGPYYVLMPGMAMPHAQAGVGVLKDSFALITLTKPVAFSDGKEVSVLLT
                     LAATDPKIHTSVAIPQIIALFELENSIERLIACQTPEEVLAMVEESKNSPYLEGLDLE
                     S"
     gene            complement(11791..12069)
                     /locus_tag="U1087_000304"
     CDS             complement(11791..12069)
                     /locus_tag="U1087_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000241478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM4754822.1"
                     /translation="MVKVLTACGNGMGSSMVIKMKVENALRQLGVTDFQSASCSVGEA
                     KGLAAGYDIVVASNHLISELEGRTKGHLVGLDNLMDDNEIKTKLQAVL"
     gene            complement(12128..13576)
                     /locus_tag="U1087_000305"
     CDS             complement(12128..13576)
                     /locus_tag="U1087_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006153412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM4754823.1"
                     /translation="MDFLQTPLNWFSQNILQNPAFFVGLLVLVGYALLKKKPHDVFAG
                     FIKATVGYMILNVAAGGLVTTFRPILAALNYKFQIDAAVIDPYFGLAAANGKIAEEFP
                     DFVSAATTALLIGFGVNILLVALRKVTKVRTLFITGHIMVQQAATVSLMVLFLIPALR
                     NQFGTAAIGIICGIYWAVSSNMTVEATQRLTGGGGFAIGHQQQFAIWFVDKIAPKLGK
                     KEENLDNLKLPSFLNIFHDTVVASATLMLVFFGVILFILGPEIMANPEVITSGAPYNP
                     AKQAFFMYVIQTAFTFSVYLFILMQGVRMFVAELTNAFQGISSKLLPGSFPAVDVAAS
                     YGFGSSNAVLSGFAFGLIGQLITIVLLIVFKSPILIITGFVPVFFDNAAIAVYADKRG
                     GWKAAAILSFISGVLQVALGAVCVGLLELSGGYHGNIDFEVPWLPFGFAFKYLGIAGY
                     VLVCLFLLAIPQLQFAKAKDKEAYYRGEAQAE"
     gene            complement(13924..20229)
                     /locus_tag="U1087_000306"
     CDS             complement(13924..20229)
                     /locus_tag="U1087_000306"
                     /EC_number="3.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pullulanase"
                     /protein_id="HEM4754824.1"
                     /translation="MKKKSVQNMKRTGMLEKKQIFGIRKLNVGVASVGIAAALFLSGA
                     GQLVQAEEVVLPASTSSTTLSEQDGGAVEATTTAIEATDSMVAEATAVTETADATAPE
                     EAPIEEGSIRLHFENVDETAPESQGLWTWGGVAEPSDGNQWPTDTANFSSSQVDDYGH
                     YVDIKKSETPGTIGYLVLKNGEKITESDQKVELLVPEQNEAWIASDYSVSSYEPLKDE
                     NVLRINYTREDNNYEGWGVWTWGDTTEASSGWPAGAVDFKLGKYGAYVDIPLSNGLDS
                     KLGFLLINQNNPDLAGNKTIDLAFADRKRHSQIFLRNDDDKVYTNPYFIEEKVELDTS
                     KATPGTKNVTVGASVKAPFNYNESGLVSVTVTNPENAEIVKMEVDTSAIGGGLVPIST
                     ELNRVTIKATSSTAPGTYSLPVKVYDKDNGYYETKLDVTITERIKADGEKDWDEQVIY
                     FMMTDRFYNGDTGNDKLVEGTASNPRGLYQGGDFKGVTAKLDYLKELGVDSIWLTPIV
                     ENIPQNVGSVKDGEYYAYHGYWASNFEKLNPHLGSLADFHELIDAAAEKGINIIVDVV
                     LNHAGYGTEETFAGMVRTKEEDKQGDDQLGSLSGLPDFKTEEAAVRNQLVAWQASWLE
                     RSTTAKGNSIYAFRVDTVKHVDDTTWQHFKNELVDRDPDFHLIGETWGANYKDTKGDL
                     GIGTMDSLLDFGFKDIAKYLVNGQLKAAGKELEERSKVLTSAASLGQFLGSHDEDGFL
                     YSLGGAEKEGNLDKLKLAASLLITAKGQPVIYYGEEVGQSGQNNWPVYDNRYDFDWSK
                     VETSDITDHYQKLLAFRNANSTLLSRGDTSTLAGNDSQGWLISKRSYQDQAAYLVFST
                     NTENKEMALEVSGKDVVVTDAYTGKSYQAIEKDGKWVVQVELPTIGQGGTMLLQTEAG
                     DIVNASVQGATEEPIEAGYFRVHFKTLPSDNLSSLGLWTWDDVEKPSSDLGAWPTGAT
                     NFSTAKQDDYGYYLDIKMKDETASKISLLINNTSGDNITGDKTIERISTKMNEAWFDE
                     NYQLSLYQPLKEGCIRINYFRTDGNYDQKGLWIWGDVTDLTLGDWPNGIDFENQGKYG
                     AYIDVKLTDLPSSIGFLLLDESKSGDDVKIQQKDYSFKDLKNQTQIFLKDDDATIYTN
                     PYFVNNVRVTGVSHVNLTALEAAFTALEGADKDSILEKLSVTDKNGQTVAVTDLVLDA
                     TSNKVRVLGDFNQENAGYTLKYGNDSFTTTMSWQLKDELYAYDGELGARVRQAGSVVD
                     MTLWSPSADSVAVVLYDKDDQSKVVGKLAMTKGDKGQWNLELNSQSGLGIADYRGYYY
                     HYEITRGDQSVLVLDPYAKSLAEWNSDLADTDPSYRIAKAAIVDPAEVGPSDLNYATI
                     PNFNQREDAIIYEAHVRDFTSDPAISDELTAQFGTFAAFAERLSYLKDLGVTHIQLLP
                     VMSYYFVNELRNAERMSEYASSNSNYNWGYDPQSYFAFTGMYSIDPTDPMKRIEEFKN
                     LVNEIHKQGMGVILDVVYNHTSKTFLFEDLEPNYYHFMEADGTAKSSFGGGRLGTTHY
                     MSRRVLVDSIKYLVDEFKVDGFRFDMMGDHDAEAIELAFTEAQKLNPNIIMLGEGWRT
                     FTGDANQPVQPADQDWMSSTDTVAVFSDEIRNTLKSGYPNEGQPAFITGGIKSVESVF
                     NNIKAQPGNFLADDPGDVIQYIAAHDNLTLFDIIAQSIKKDPSVAENYTEIHQRQRLG
                     NLLVLTSQGTPFIHSGQEYGRTKQFLHPDYQYPVAEDQVPNKAHLLTNADGTPFDYPY
                     YIHDSYDSSDAVNKFDWTKATDEALYPENTRTQAFTKGLIALRKSTDAFRLGTKEEVE
                     QKVSLISIPGQNGIAKNDVVIAYQTIASNGDRYAVFVNADSKERSFVLSDIYKELLKG
                     HVLVDGKRAGIAALTDLVGMTLTDDAVVLAPLTATVIRLPYITTAVPDTAPTAEEKPS
                     LDFTTKERTEEKILPIVEEIRYDASLSTDQSYVLQEGKTGKKVLVYQDVLIDGKVVAT
                     NLLSETVVDSETRIVVKGSMEAKKEAEKPSLSTTAQASGQATSGASKASLPITGDRQS
                     DLALLGLGLAGLGLTVAAQGRTKKSEE"
     gene            complement(20411..21352)
                     /locus_tag="U1087_000307"
     CDS             complement(20411..21352)
                     /locus_tag="U1087_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM4754825.1"
                     /translation="MTTLADVARLANVSKMTVSRVINHPEQVTQELRTLVTAAMEELN
                     YKPNVAAKALAQQRTLIVQAVILEKMDVVEPYYIDLLAGIADELNHRNYTLQLVTNPS
                     QITDQCDGYIVTGARKDDYPWLKGLRKPLILFGENQEGLPFVDSDNRLATRSATQFAL
                     SKGYERIVFVGIDLPEAFEKGREEGYKDAMQGRETHLYRLENRSRVAEEFVKNLDYLP
                     ENTCFICASDRLALGVTRGLQALGKSIPNDVGVIGFDGFFLDRMSRPALTTMKQPIRQ
                     MGALSVKHLMTILDGKPLARQGHYCQATLIERETTPQ"
     gene            complement(21717..22463)
                     /locus_tag="U1087_000308"
     CDS             complement(21717..22463)
                     /locus_tag="U1087_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM4754826.1"
                     /translation="MIQASGVKLTFGGQQVLKGIDVEVNPGEVVVILGPSGSGKTTLL
                     RSLNFLEKADAGHLVFGEDSYDLAQMTKKEIAGIRKRTAFVFQNYNLFANKTALQNVT
                     EGLIVARKVPKQEAERIGKAALDKVGLSDKYGFYPSQLSGGQQQRVGIARAIATNPEV
                     IYFDEPTSALDPELIGEVLAVMMQLAKEGMTMVVVTHEMGFARAVADRVIFMDGGRII
                     EEGRPEDIFDRPQEERTKQFLARIQKVDVE"
     gene            complement(22473..23132)
                     /locus_tag="U1087_000309"
     CDS             complement(22473..23132)
                     /locus_tag="U1087_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM4754827.1"
                     /translation="MTERVWQLLLDSFSQILVPGLLVTIPLTILSFTFGLLIAIGTAL
                     VQIAQIPILKQVARFYIWVVRGTPLLVQLYVIFFGLPSLGIVLDAFPSAVLVFSVNTG
                     AYAAETIRASIESVPKGQLEAGYSVGMSFAQTMRRIILPQAFRVAFPPLSNTLIGLVK
                     DTSLAANITVLEMFMATQQIAARTYEPFALYCEVALVYLLFSTILTKLQAYGEKKLAV
                     Y"
     gene            complement(23145..23948)
                     /locus_tag="U1087_000310"
     CDS             complement(23145..23948)
                     /locus_tag="U1087_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM4754828.1"
                     /translation="MKKIAMFTSLLYAGIVLAACNSSAGTSNSTDQTLLAQIKEEGVI
                     QIGTEGAYAPYSYHDESGKLVGYDVEVAEAVAEKLGVKVEFVETEWDSMIAGLDAARF
                     DTIANQVGITDERKAKYDFSTPYTYIYGALVTQKDNTDITGFADLSGKKSVNSLTSNW
                     ANLARENGAEVVGVDGFSQAVELLNTGRVDATINDNLVYLDYVKQHADAPIKVVTLTD
                     DVSTTAFPVAKGNEDLVKEIDAALAELASEGKLAEISNKYFGEDVSKAK"
     gene            complement(24096..24418)
                     /locus_tag="U1087_000311"
                     /pseudo
     CDS             complement(24096..24418)
                     /locus_tag="U1087_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027949.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         6725 a         5749 c         4896 g         7213 t
ORIGIN      
        1 gagccagaaa aactgaccgt ttccgatcag tttggtttta ttacaaacgt gcgttcaatt
       61 ctgcaccgag ttcttcaaat cctggttttc caagaagagc aaacatgttt ttcttgtagg
      121 cttctacacc tggttggtca aatgggttaa tcgcattgag gtaaccagag atagcaatcg
      181 ccaactcgaa gaagtagaaa gtgtaaccaa gtgtgaactc atcttgttgt ggaagggtca
      241 caaacatgtt tggtacgcca ccatctgtgt gggcaagaag tacgccgtcc gttgcttttt
      301 tgtttacaaa gtcaacgtcc ttaccttgca agtagccaag accgtcaagg tcttctgcca
      361 tgtcaggaat gaggatattt tttcttggtt tgtcaacacg aaccactgtc tcaaagatat
      421 tgcggtttcc ttcttggata aattgtccaa gtgagtgcaa atctgttgag aagtttgcag
      481 atgttgggtt gatacctttt tggtccttac cttctgactc gcccgccaat tgtttccacc
      541 actcgctgaa gtattgcagt gatggctcgt agttagccaa gatttctgtc acatagcctt
      601 ttctgtaaag aatgttacgc actgcagcgt attggtatgc ttggttttca gcaatcttat
      661 cagatgtaaa tgtcgtgcgg gctgcgtttg caccttccat aagggcatca atgtctgcac
      721 cagctgccgc gattggcaat agaccaactg ctgtcaagac agagaaacga ccgccgacat
      781 catctggaac tacaaaagtt tcccaaccat ttgcgtccgc ttcaacctta actgcacctt
      841 ttgccttgtc agttgtcgca tagatacgct tgttggcttc ttcttgaccg tatttcttga
      901 caagtaattc tttgaagacg cggaaagcaa tcgcaggctc agttgttgta cctgattttg
      961 aaatcacgtt aactgagaaa tccttgtcag caacataatc caccaagtca gcaagatagc
     1021 ttgatgagat agagtttcca gcgtaaagga tttgtggagc tttgcgctct tcacgtgttt
     1081 gcaagtttac aaaggcattg ctcaagaaat caatagctgc tttagcacca aggtaagaac
     1141 caccgatacc gataactacc aaaacttcac tttcattttg gattttagct gctgcttcct
     1201 tgatacgagc aaactcttct ttgtcgtagt tttctggcaa atccaaccag ccgataaagt
     1261 cgctaccagg acctgttcct tgacggagca tttggtctgc aagggtaact tgtggttgca
     1321 tgtattctac ttcttgagct ccaacgaatt ggcccaagac ttttgaataa tcaaatgtaa
     1381 tatgtgtcat gtttttcctc catttatgta ccataatatg ataacgcttt atcatatttt
     1441 tttcaagaaa tttatcaatt ttcatttatt ttcatgaaat atgttgtata aatcttaatt
     1501 tttgtgaaaa tctaacgaaa ttttcgcgtt tgtaataatc ctccaaagtc tctcccgact
     1561 gggttactgt aatccatttc gggagaatct tagatagtag gtaaagcgga atgagggcag
     1621 gataccaaat gaacatgact tcaaagatga accggtcgtt gttgcccctt gaaatgtaac
     1681 gttggcggta ttcttctttg agagaagggt ggggaatata gatatgaaat ggcacaccac
     1741 cgcgtataga catggccagc aacattctca tcagaaaatt cagcgctact aggactgtct
     1801 ttccttgtct atgaagagta taggccttat tgacatagat tgttttatag cgtttatcct
     1861 tcagtgggcg tttggtggat tttcgctcct ctttcgttaa atgacgaaca ctgctattat
     1921 cgtacttaat gtcggacatt tctaagtcca caacatctgt atatttctta gcaagtgtcg
     1981 tttttcccat acctggaaag gcaaataaaa acataggctt tcctccttat tcctcagtag
     2041 aatagcagag catccaaaaa gttttcttaa gttgccccta ttttgcccct catttctaaa
     2101 aataaaccaa agaaaaaacc tctgaaatcc tgatttcaaa gggtttttag attatatgca
     2161 aaaagagcac acattcgacc tcgcttaggg ctgctggatt cctcccctga cccgcttcac
     2221 gcacgaatgt tgctccgttt aatattataa cacaatttgg ccagagtgca agcttgggaa
     2281 tattaactag ctatccgaaa ttgcttcctc ttgcgtcttc atgataagtt tagcagcctt
     2341 ctgactttct ctgcgttgtc tgaaaaaatc ttgcatgata ttggcacatt ccgcttctaa
     2401 aatacctgtt tctaccttga cacgatggtt gagccgctca tctgtcagaa tgtcatagag
     2461 gctccctgca gctccaaact ttttgttggt tgctccatag atgacctgcg gaatgcgtgc
     2521 taagccaata gctccgctac acatcacaca aggttcaatc gtcacaaaaa gggtcgaatc
     2581 aagcaagcgc caattcccct caacattgtt agcctcttgg attgccataa cctcagcgtg
     2641 catgattgcc tgattgagtt cctcacgcgc attatgccct ctgccaataa tctggccatc
     2701 cttgacaatc acacaaccaa ttggaatttc atccttttct agcgactttc tagcttcctg
     2761 caatgcttga gtcataaaat actctttttc ttcatgtgta tagttcataa atctattata
     2821 gcacagccct gataacagtt caaaatcact tctttatact ctgctatcaa aatcaatcta
     2881 acactacttc ttccttatca cacatttctt tcaaaattct gcccttctat taacttaaaa
     2941 atataaaaat acctcctcag tcgagaaggt agggggagca atattgatat ttacagatat
     3001 taatatacca tctattatcg atattgtcaa gaaaattttt aaaaaaatgt caaaaacagc
     3061 ctcgaaaggc tgtctctgac attttctatt acaattcgcc aactaatttc acaacatttt
     3121 ctactgtgaa gccgtagttg tcaataactg tttgggctgg agctgaggca ccgaatgtgt
     3181 cgataccaag gactttaccg tcaagaccga catacttgta ccaactttga gttgcaccca
     3241 tttcaattgc caagcgacga cggatggcat ttggtaggat ttcttccttg taggcagcat
     3301 cttgtgcatc gaagagttca gttgatggca cagaaaccac acgaacctta gtgcctgcta
     3361 cttctagttc tttggcagct ttaacagcca agttcacttc tgaaccagat gcaagaagga
     3421 ttgtatcaaa gcctgctgct tcatagacaa cataagcccc ttttgcaacc ttgtcaaagt
     3481 ctgtaccttc ttcaactgtc aagttttgac gagtgagaac aagggctgat ggtgtagact
     3541 tgctagtcaa tgacaagtac caagctgcct gtgtttcacg cgcatctgct gggcggaaga
     3601 cattgaggtt tggcatagca cgaagtcctg ccaagtgctc aatcggctcg tgagttggac
     3661 catcttcacc gactgcgatt gagtcatgag tgaagacata agtcacagga agtccttgaa
     3721 gagctgacaa acgaactgct gcttttacat agtctgagaa gacgaagaag gtaccaccat
     3781 agacacgaag tccgccgtgg gctgccatac cattcaagat agtacccatg gcaaattcac
     3841 gcacaccgaa ctggatattg cggttgagtg gatttactga atcttgcaaa ccatcttcct
     3901 tgatataggt catgtttgag tgagccaagt cagctgaacc acctaagaaa gttggcaata
     3961 ctttagccgc tgcgttgagg gcatcttgtg atgagttacg agttgcttgt gagaagccat
     4021 tttcgtaaac cgggaagtct tctggcttga tttcgactac atcacgacct tccaagatag
     4081 ctgttacttc agctgctaat tctggatgag ctactttgta gtcttcaact aattttaccc
     4141 aagcatcgta ggctgctgca ccgcgatcag ctacattagc tttgaagtct gcatagactt
     4201 cagctggaat ttcaaatggt gcatagttcc aatcaagcgc cttacgagtt gcttctgttt
     4261 cttctgcacc aagtggagca ccgtgaacgg catttgtacc ttgtttgttt ggcgaaccat
     4321 gaccgataac agtcttgatt tcgataagag atggcttacc agctactttt gccttttcaa
     4381 tagcagcaaa gatggcatct acatctgtac cgtctgttac gaggtctgta tgccagccat
     4441 aagcattgta acgggcacgt acgtcttctg tgaaggagtc ttttgtttcg ccatccaagt
     4501 tgatgtcatt tgaatcgtaa agaacgatga gtttttctaa tttttgaaga cctgcgtaag
     4561 aagccgcttc tgctgagaca ccctccatca agtcgccatc accacagatt acgtaagtat
     4621 agtggtcaaa gattgggaaa ccatcgcggt tgtacttagc tgcaaggaaa cgctctgctt
     4681 gcgcaaaacc cgtcgcagtt gagatacctt gtccaagagg ccctgttgtt gcatctacac
     4741 ctgctgtgtg accaaattct gggtgacctg gtgtttttga accccattga cggaagttct
     4801 tgatttcatc catagtgaca tcttcaaatc ctgacaaatg aagaagtccg tagaggagca
     4861 ttgacccatg acctgctgat aagataaagc ggtcacggtt cacccagttg ggctgagctg
     4921 ggttgatacg aagttcttta gtaaaaaggc tgtaggccat tggagccgca cccatgacga
     4981 cacctgggtg acctgatttt gatttttcga tggcatcaat accaaggaaa cgaagcgcat
     5041 tgactgaaag atttgacatg tttttctcct tttttaaagt catgaattta ttataccata
     5101 aagcgttttc tatgtctgtt tgaaatgaag cgagaaataa attgtccgta gaaaagaggc
     5161 aggactttcg tcccgccctt ggagtgaaca gtagtaattc gcacatttca tactttatca
     5221 gagtttatag tgcctctcct cgtctctatg gggcaagaga gttctaaatc ttataacaaa
     5281 gccttaaatt gaatatttga gtcttctaag aagcaatcgt caaagccacg tgggtggtga
     5341 tattcgatac agtccttgtc aagtgggtaa gtatacttgc caccaacttc ccagatgaat
     5401 ggatggaaat catattgcaa gcgttcctta cgcattttcc agagctgcaa gatttcatct
     5461 gttgacgcca tgaagttaga ccagatgtca tagtgaacag ggataatcac cttagcacgc
     5521 aagttttctg ccatccggag aaggtcgatt gaggtcatct tgtcctggat accgattggg
     5581 ttgtcaccgt agttgttgat agcaacgtcg atgttgaagt cacgaccgtg ttttgcaaag
     5641 tagtttgaga agtgggagtc tgcaccgtgg tagatggttc cgccaggcgt ttcaaagaca
     5701 tagttgactg ccttgcgagc catgagttca tctgtcacag gaagtcctgc taatttacca
     5761 ccattttcgt cataaccttc gattggcaag gtcaccaagc aagtacggtc gaaggattct
     5821 acagcatgga ccttgatgtc tttgaattca aagctatcgc ctggtgcgat acggatgata
     5881 cggtcagctg gaacacccca tttttcccag atgtcgccac tttcaactgg accgacaaat
     5941 ttgacgtggt ccaatttagg attgttgatg atggcagcgg cagtgctgat atccatgtgg
     6001 tcgctgtgga cgtgcgatac taggtagtag tccaattcat tgatggcaaa tggatcgata
     6061 accattggct gcacacgcaa gtttggttgc aatttgcgca caccggccat attagccatc
     6121 tggtgtcccc aaaccatatc tttcactttt ttagtggatt tcccacgtga tgaccagagg
     6181 tccatgacca cgttagctcc acctggtgtt ttaatccata caccgcagtt tccaagccac
     6241 cacatagcaa agttgccttc tggcactact tcttcttcaa tttcttcatt gagccaagtt
     6301 ccccattctg ggaaggttga aagaatccag gattctcttg taatatcttg aactttagcc
     6361 attttccatt cctcctataa ggtacgtttc tatgcttcta gtatatgctc caaaggcaac
     6421 aaaaaaaaga ccaaataaaa cacaggcttg tgttcaaact tggactttac cctaatacag
     6481 atctgtttca atatcttgac tggataaatt ggttaataat tcattggtaa tcagcttttg
     6541 tagccgttgt ttgagttctc gagcggtcct tccgtctgcg atatatcccg atagaagctt
     6601 gtctagttct actgcaaaaa cttgtttttc atctgccaaa ctacgatatt ttgcaaaatg
     6661 agtcatgttt agcacatcat caaaatctaa aatggggtga acctgcagca aagggaaatc
     6721 cgtttccaac ccatcgctgg ttgtaatcaa gaaatcaacc tctagtaagt cctcgacact
     6781 cttgaattgt tcagtggtaa agacggcgcc aatcttctta tctggcaagt gatgctggca
     6841 ttgtttataa agtaagcgtt ggactgacac cccttcatca cagattaaat agacaatctg
     6901 tgtctgtgcc ttgcgcgtcc cactgcgtcg aatagcccct cctagatgaa tcgtcaaata
     6961 ggcaatatct ccatcggata actcaatctg ccactcctcc tccaaaatct ttccagaaac
     7021 ccgtgtcata gcaaacaggg tgccgtattt atcttggatt tgttggacca ttggattttt
     7081 agataggatg ccgtaggttt ttctgaacaa cagagccttg caatgtgcca agagatgttt
     7141 ggctaattcg tcaggatttt ccaattcaaa tggtgaatgt atctcaaaat gatgaataaa
     7201 tcgctccact acacgcttca agtcaatgaa atcttgactg aatacatgaa catcgctatc
     7261 ctttcgatag gatagaagta aaatggcaat cagggagatt tctatttcat ccaatttcaa
     7321 atcaaaggtt tgcaacaagg catctttcaa ttcctgagca actcggtact cgatacgctc
     7381 tcgaacttgt tcaaattctt tgagaatggc tcgttcttcc aagtcatcca gctccatatt
     7441 gcgatagcta aggagcaaga aaggcaatac tttgagcata aactcgattt cgtagcgatt
     7501 gattttctta cccagtttct tttctagctg cgatacttgt ccctgtaaaa attgtgccat
     7561 ttcttctgag aagagcaact gacaccccac caactcaaat aacttatctt ctagaacctg
     7621 caaaaaacct ttattggcat ccaagaagat ggtatagaga agtgagtgga catattggat
     7681 tttatttaaa gggtgacaaa cgagactata gccatgactc ttagacacat agagggtcat
     7741 cttgtattgt tcttgagcca actgggttcg aatttcattc aaatcattta agaccgtatt
     7801 acgagaaact tctgtcaact ccattagccg ttcaatggtc actctttctg gtgtgataca
     7861 gatatatacc aacatcagct gaatgcgctc aggcatgctc atgacgtagg tgtacgaatc
     7921 aatggaatcg agaagatctc gacaggctag tttttgcgct tcggtaagtc gaataccgag
     7981 gcgaggtaag ctttcaatac tctctacagt tgttggtagg gcatcattga ttttttctag
     8041 atggtaatag atttttcgac gtgattgttg caagcccttg gaaatagcca tgattgtctc
     8101 aggttcctgt agaccaatca ggtacctcag tagagcgcaa ctactcttat ctaataacaa
     8161 gattctcctc ctctttcccc cgtcccgtta ctatcttaac ataattatct gggatattct
     8221 aataattatt aaaattcatc tgattattac ttgttttaca tcgcataaat atttgtagtt
     8281 agaattaata gatgctttta ataatttcta cccgggtaat cagttctccg tgcatgttat
     8341 ctatccgaag ggcaacattt ttcaaatata cacaggcacc aatagcaatg gttttctctt
     8401 cttcattgag ttttcgtgtc acaaaatctc tcaaagtctc actaccttca cttggaattt
     8461 ttactcgtgc gatgatatta gccactttta ctttctggct ggcccgcatg atgatattat
     8521 tagagtcatc aaactgggta aagaggtact ttctcactgc aaataagatg gcaaccgacg
     8581 caataccaat caagtagtcc atgcttgagc catgttccac aatcagttga cgggcaatgg
     8641 ccaccaagag aacctcgatg acagtactag gggattgttt gcagagcatc ttgatgaact
     8701 cgaccccaac cgccaaggtc atggccttgc ttaaaaaact ctggataaag ttatccgctt
     8761 gaataccacc cgtcagtgaa ccaactaaat ccgccaacaa caaacctgac aatgctagta
     8821 gggctaatcc taaaatggct gataaaatca actccagata gtaggcaacc tctgtcagac
     8881 tatcttgtaa aaactttctc atctttctcc tcatcaaaag agaaaaagca gttctccttt
     8941 ttggggagtc tgctactttt ccctactttt tttcacacaa gaacttaatg ttcatcacct
     9001 ttctgtccgt agtaggcatt gggaccatgt ttacggaggt agtgcttgtc catgatatag
     9061 cttggcgctg gctccacccg tggattgatt tgttctgtgt agcggttcat ctgagccact
     9121 tcttctagga caacactgtg gtaaactgcc tgagcaggat ccttgcccca agtaaatggc
     9181 ccatggtttc ggacaacaat acccggaaca gcaactgggt caatgccacg gcgttcaaat
     9241 tcctcgatga tgactgaacc tgtttctttt tcataggccg agtttacttc ctcagctgtc
     9301 aaagaacggg cacatggtac cggaccatag aaatagtccg catgagttgt cccataaaat
     9361 ggaatgtcac gacctgcctg agcccaaccc actgcttctg tcgaatgcgt atgcacgaca
     9421 gcatgtacgt ttggccaagc cttgtagagg gcaacgtggg tcgccaaatc agacgaagga
     9481 ttcaggtctc cttccactac atttccgtct aagtccgtaa cgaccatatt ttctggtgac
     9541 aatttttcgt aatctacacc agaaggcttg ataacgatgc gaccaagttc acggcagact
     9601 tctgatacat ttccccaggt gaatttgaca agtccatgag caggtagggc gatattggct
     9661 tcatagaccc gttggcgcat ttcctgtaaa tcttttggca ttagttcaac cccgctttct
     9721 caatcaatgg atagaggaaa gcctgcgctg ccttgatagc tgctcgtgtt tcctcaaccg
     9781 tttcacaatt ctctgaccac atttcaatca agaatggacc ttggtagttg gtctttttca
     9841 agacagcaaa catattgtcc cagtccacgc agccctgacc gaatggtaca tcgcggaatt
     9901 gacctttgga gttctcggtt accgcataag tgtctttcaa gtgaagggct gcgatggaac
     9961 ggtgtcccag gtaaaattcg ctataaatgt cattgtgcca agcagacacg tttccagtat
    10021 ctggatagac aaagagatag ggcgagtcga tttctttttc aacggctagg tatttttcaa
    10081 tagagttgat aaatggatca tccataatct caatggccaa catgacctga gcctgttctg
    10141 cccagtcgca agcctgacgg agattcttga tgaaacgctc tctagtttca ggtgattttt
    10201 cctcgtagta aacatcgtaa ccagccaact ggatgacacg gacacccaag tcctgagcca
    10261 gttcgataca ctgtttcatg gtttctagcg acttagcttc gagagcaggg tcattagaac
    10321 caagcggata acgacgatgg cctgagaaac agatagtcgg aatgcggaca cctgtttcat
    10381 agatagcctt gaccaaatcc aaacgctctt ccttagtcca ctccaaacga gccaaacgtg
    10441 catcgctctc atccaccgac atctccacaa agtcgaaacc taattctttg gcaaactcca
    10501 agcgttcctt ccatgtgaag tgtttggacg ttgccttttc atatattccg attggtcgtg
    10561 ccataggctt tacccccaga tacgacggat ttcgtcttta aattcacgcg ctgcagctgc
    10621 tggatttgca gcttctgtga taccacgacc tgcgataaag gtgaagacat ctacaccctc
    10681 gaagagttta agggtatcca catcaagacc acctgttaca gaaacacgga agcccatttc
    10741 aaccaatttt ttcaccttgt tcaagtcttt ttcgccccac gtttcgccag caagaagggc
    10801 atcacgagat tggtggtaaa tcgcttggga aatacctgcg tccaaccaaa gctgagcctg
    10861 ttcataagtc cagtcaccgt aaagctcgat ttggatttca cccgtgtcac cacgcacttc
    10921 cttgatagcc ttcaaagcag cttccatagt tggaatagtt gctgaacaga tacaagtcat
    10981 ccagtccgca ccacgaacag cattgttttt agccacagta ccacccgcat ccgcacactt
    11041 ggtatctgca acgataattt tgtctgggaa gaggctacga agaacttcca ccaattcgct
    11101 accaacttgg agcaagcaaa ccgtacctgc ttcaatcacg tcaacttcat gaccaacgga
    11161 gacagctgct ttaatcgctc cctgcaagtc tgaatggtca agggcaactt gtaaatttgg
    11221 aatatgtttc atgttttttc tcctaacttt ctaaatctaa accttctagg taaggactgt
    11281 ttttggactc ttccaccatt gccaagactt cctcaggagt ttgacaagca atcaaacgct
    11341 cgattgaatt ttccaattcg aaaagggcaa tgatttgtgg aatagctact gaagtatgga
    11401 tttttggatc tgtcgcagcc aaggtcaaga ggacagaaac ctctttacca tctgaaaaag
    11461 ctactggttt tgtcaaggta atcaaagcaa aggaatcctt caagacgccg acacctgctt
    11521 gggcgtgagg catagccata ccaggcatga gcacatagta aggtccatat tcttcagttg
    11581 atgcgatgat cgcgtcgtag tattcctcag ttgcagcgcc gctgtcaatc agcggttcaa
    11641 cagccttgtg aacagcctcc tgccaggttt ccgctgtcaa tcccaagcga atggaattat
    11701 tttctgtaaa tgatttttgt aaattcatag tttttccctt ctacacgcta tatgaaaggg
    11761 ggagggaaac tccctacccc taacggctat ttatagcact gcttgtaatt ttgttttgat
    11821 ttcgttgtcg tccatgaggt tgtcaagacc aaccaaatga cctttcgtgc gaccttccaa
    11881 ctcagaaatc aagtggttag aggctacgac aatatcatat cctgccgcta aaccttttgc
    11941 ttcaccgact gagcaagaag ctgattgaaa atctgttacg ccgagttgac gaagggcgtt
    12001 ttctaccttc atcttgatga ccatagatga gcccatgccg tttccgcagg ctgttaaaac
    12061 tttaaccata atttcactcc tattttattt ttaatacatt atgctctgat tttacagacc
    12121 aaggatacta ttctgcttgt gcctcaccac gatagtatgc ttccttatct tttgctttcg
    12181 caaattgaag ttgcggaata gccaataaga agaggcagac aagaacataa ccagcaatac
    12241 ctaggtactt aaatgcaaat ccaaatggta accatggcac ttcaaagtca atgtttccgt
    12301 ggtaaccacc gctcaattca agcaaaccaa cgcagactgc accaagagca acttgaagga
    12361 cacctgagat gaaggaaagg atagctgccg ctttccaacc accacgtttg tcagcgtaca
    12421 ctgcgatagc tgcgttatcg aagaatacag gtacgaaacc agtgatgatg aggattggac
    12481 tcttgaagac aatcaagaga acgattgtaa tcaactgacc gattaaaccg aaggcaaaac
    12541 ctgaaagaac tgcattagat gaaccgaagc cgtaagaagc tgcaacgtcc accgctggga
    12601 atgaaccagg aagcaatttg cttgagatac cttggaaggc atttgtcaat tctgctacga
    12661 acatacgtac accctgcatc aagatgaaga gatatactga gaaagtgaag gctgtttgaa
    12721 tcacatacat aaagaaggct tgtttagctg ggttgtatgg agcacctgaa gtgataactt
    12781 ctggatttgc catgatttct ggacccaaga tgaacaaaat cacaccgaag aacacaagca
    12841 tcaatgtcgc tgaagcaaca actgtatcgt ggaagatgtt gaggaagcta ggtagcttca
    12901 agttatccaa gttttcttct tttttaccaa gttttggtgc aatcttatcg acaaaccaga
    12961 tcgcgaattg ttgttggtga ccgatggcaa atccaccgcc acctgtcaat cgttgcgttg
    13021 cttcaactgt catatttgag ctgacagccc agtagatacc acagatgata ccgatcgctg
    13081 ctgtaccgaa ttggttacga agagccggga tgaggaagag caccatcaat gagactgttg
    13141 ccgcttgttg taccatgatg tgtccagtga tgaacagagt acgtactttt gtaaccttac
    13201 gtagtgccac caagaggatg ttgacaccga aaccaatcaa gagagctgta gtggctgctg
    13261 atacgaaatc agggaactcc tcagcaattt tcccatttgc tgctgcaaga ccaaagtaag
    13321 ggtcaataac tgccgcatca atttggaact tatagttcaa ggccgccaaa atcggacgga
    13381 aggttgttac caaaccacca gctgctacgt tcaaaatcat atagccgact gtcgctttga
    13441 taaaccctgc aaaaacatca tgaggctttt tctttagaag ggcatagccc accaatacca
    13501 aaagacctac gaagaaggct ggattctgca ggatattctg tgagaaccag tttaatgggg
    13561 tttgaaggaa atccattttt cattctcctt ttttgaaatg atttttatgg ttttattata
    13621 agttatgtaa gcggaaacaa aaagaccaaa taaagcacag gcttgtgttc actattggac
    13681 tatttccgaa ctttaatggc tgatttaatc agaattcctt cctatagttc accagcccat
    13741 ttattctaat aatcaataaa tagacgttat tttacctaaa aatttaaaag aacctcaaaa
    13801 aacataaaag aagaggttgg tttgaaacca acctcttcta gagggaagtg atactctcaa
    13861 ctcttgtatt tataagacat tcacaaggtt ttgagtagtg ctcctctgga gagccaaata
    13921 ttattactct tctgattttt tagttcttcc ttgcgcagca actgtcaaac caagtccagc
    13981 aagtccgaga cctagaagtg ccaaatcgct ttgtcggtca cccgtaatcg gcagactcgc
    14041 cttgcttgca ccacttgtcg cttgcccaga tgcttgagca gtagtagaaa gactcggttt
    14101 ttcagcctct ttcttagcct ccatactgcc tttcacaaca atacgtgttt cgctatcaac
    14161 aactgtttct gataacaaat tagttgcaac taccttacca tcaatcaaga catcctgata
    14221 aaccagaact ttcttaccag ttttgccttc ttgaaggaca taagattgat cggtagagag
    14281 acttgcatca tagcgaattt cctctacgat aggaagaatt ttttcctctg tacgttcctt
    14341 ggtagtaaag tctagacttg gtttttcttc agcagtaggc gctgtatctg gaactgccgt
    14401 agtgatgtaa ggcaagcgaa tcactgtcgc agtcaacggt gcaagcacaa ctgcgtcatc
    14461 tgtcaatgtc atacctacca aatcagtcag cgctgctatt ccagcccgct taccatcaac
    14521 cagcacgtga cccttaagca attctttgta aatatcagaa agaacaaagc tgcgctcctt
    14581 actgtcggcg ttgacaaaaa cagcatagcg gtccccattg cttgcaatgg tttgataggc
    14641 aatgaccaca tcatttttgg caatgccatt ttgacctgga attgaaatca agctaacctt
    14701 ctgttcaact tcttctttcg ttcccaaacg gaaggcatct gtagatttgc gcaaggcaat
    14761 caatcctttt gtaaaggcct gagtacgggt attctctgga tagagcgcct catctgtcgc
    14821 tttggtccag tcaaacttgt tgaccgcatc cgatgaatcg taagaatcat ggatgtagta
    14881 tggatagtca aatggcgttc catctgcatt ggtcaacaaa tgcgctttgt tcggcacttg
    14941 atcttctgct acagggtact gataatcagg gtgaaggaac tgtttggtcc gtccatactc
    15001 ctgaccagaa tggataaacg gtgtcccttg agaagtcaaa actagcaaat tacccaagcg
    15061 ttgacgttgg tgaatttcag tatagttttc agcaactgac ggatccttct tgatggactg
    15121 agcgataata tcaaagaggg tcaagttatc atgcgcagca atatactgga tcacatcacc
    15181 tggatcatct gccaagaaat tacctggttg tgccttgatg ttattgaaga cagattctac
    15241 actcttaata ccacctgtga taaaggctgg ctgaccttcg tttggataac cagatttaag
    15301 tgtattgcga atttcatctg agaatactgc aaccgtatct gttgaactca tccagtcttg
    15361 gtccgctggc tgaacaggct gattggcgtc gcctgtaaag gttctccatc cttcaccaag
    15421 cataatgatg tttggattga gtttttgtgc ctcggtaaag gccagctcaa tcgcttcagc
    15481 atcatggtcc cccatcatat cgaagcggaa accatctacc ttaaactcgt ccacaagata
    15541 cttgatggaa tcaactaaga cacggcggct catgtagtga gtggttccca gacgaccccc
    15601 accaaagcta gatttagctg taccatctgc ctccatgaag tgataatagt ttggctctaa
    15661 gtcttcaaat aagaaggtct tagaagtgtg gttatagacc acatccaaaa tcacccccat
    15721 gccttgtttg tggatttcat tgaccaggtt tttgaattct tcgatgcgtt tcattggatc
    15781 ggtcggatct atagaataca tacctgtaaa ggcaaaataa ctctgtggat catagcccca
    15841 gttgtagttg ctgttgcttg atgcgtactc actcatccgc tctgcatttc tcaattcatt
    15901 gacaaaatag tagctcataa ctggtagcaa ctgaatatgg gtcacaccca agtctttgag
    15961 gtagctgagt cgctctgcaa aggccgcaaa ggtgccaaac tgagctgtca attcatcaga
    16021 aatagcagga tcggatgtga agtcacggac atgagcctca tagataatag catcttcacg
    16081 ctgattgaag ttaggaattg tggcatagtt caaatcactt ggaccaactt ctgctgggtc
    16141 cacaatcgca gcttttgcaa tccgataaga tggatctgta tctgccaaat cactattcca
    16201 ctccgctaaa gacttagcat atgggtctaa aacaagaaca gattgatccc cacgagtgat
    16261 ttcataatgg tagtagtaac cacgatagtc cgcgatacca agacctgatt gactgttcaa
    16321 ttcgaggttc cattgtccct tatcgccctt ggtcatggct aatttaccga ccaccttaga
    16381 ctggtcatcc ttatcataaa gaacaactgc tacactgtct gcacttggcg accagagagt
    16441 catatcaacg acactaccag cctgacgcac acgcgcacca agctccccat cataagcata
    16501 tagctcatcc ttcaactgcc agctcatagt tgttgtgaag ctatcattgc catatttaag
    16561 ggtatagccc gcattttctt ggttgaaatc cccgaggact cgcaccttgt tgcttgttgc
    16621 atccaagaca aggtccgtca cagcaactgt ctgaccattc ttatctgtta cagacaattt
    16681 ctccaagatg ctatccttat ccgcaccttc caatgctgta aaggctgctt ctaaggctgt
    16741 taggttaacg tgagaaacac ctgtcacacg gacattattg acaaaataag ggttggtgta
    16801 aatagtcgca tcatcatcct tgaggaagat ttgtgtctga tttttcaaat ctttaaagct
    16861 ataatctttc tgctgaatct tcacatcgtc tcctgacttg ctttcatcca atagcaagaa
    16921 gccaatggaa cttggtaaat ctgtcaattt gacatcgata taggcaccgt acttgccttg
    16981 gttttcaaaa tcaataccat ttggccagtc acccaaggta aggtcagtca catcacccca
    17041 aatccagaga cctttttggt cataattgcc atcggtacgg aagtaattga tacggatgca
    17101 gccttctttt agaggttgat agaggctgag ttggtagttt tcatcaaacc aagcttcatt
    17161 catcttggtg ctaatccgtt caatggtctt gtcacctgtg atgttatcac cagaagtgtt
    17221 attaatcaac agactaatct tgctggctgt ttcatctttc atcttgatgt ccagataata
    17281 gccataatca tcctgcttag cagtactgaa attggttgca cctgttggcc aagcaccaag
    17341 atctgacgat ggtttttcga catcatccca tgtccataaa cctaggctag ataaattatc
    17401 agatggtaga gttttaaagt gaacacggaa gtaacctgct tcaattggtt cttcagttgc
    17461 tccttgcaca cttgcattga cgatgtcacc tgcttctgtc tgaaggagca tggtgccacc
    17521 ttgaccgatt gttggcagtt cgacttgaac aacccattta ccgtctttct cgatagcttg
    17581 ataagatttt cctgtgtagg catctgtgac aactacatct ttaccagata cttcaagcgc
    17641 catttccttg ttctcggtat tggtcgagaa gacaagatag gcagcttgat cttggtaact
    17701 gcgtttgctg ataagccaac cttggctatc atttccagca agtgtgcttg tatcaccacg
    17761 tgagagcaat gttgaattgg cattgcggaa agccaataat ttctgatagt ggtctgtgat
    17821 gtcgctagtc tctaccttgc tccaatcgaa atcgtaccgg ttgtcataaa ctggccagtt
    17881 gttttgtcca gattgcccca cttcttcacc gtagtaaatg accggctgac ctttagcagt
    17941 aatcaaaaga ctagcagcca atttcagttt gtccagattt ccttcttttt ctgcgccacc
    18001 gagactgtag aggaaaccat cttcgtcgtg actgcccaag aattgaccca gagaagctgc
    18061 actagtcaga accttgctac gttcttccag ctcttttcca gctgctttta gttgaccatt
    18121 gaccagatat ttggcgatat ccttgaagcc aaagtccaac aaactatcca tagtgccgat
    18181 acccaagtca cccttggtat ccttataatt cgctccccaa gtttccccaa tcaagtggaa
    18241 gtcaggatct ctatccacca attcattttt gaaatgttgc catgtggtat catcaacgtg
    18301 tttgactgta tcgacacgga aagcatagat agagttgccc ttggcagttg ttgaacgttc
    18361 caaccaagat gcctgccaag caaccaactg attgcgaaca gcagcttctt ctgtcttgaa
    18421 gtctggtaat ccagataatg agcctaattg gtcatctccc tgcttgtctt cttccttagt
    18481 ccgtaccata cctgcaaagg tttcttctgt gccatagcca gcatggttaa gcaccacgtc
    18541 aacaataata ttgatgcctt tttcggctgc ggcatcaatc aattcgtgga aatcagctaa
    18601 acttcccaaa tgcggattta gtttctcaaa attggatgcc caataaccat gataagcata
    18661 gtattctcca tcttttacgc taccaacatt ctgtggaata ttttccacaa tcggagtcaa
    18721 ccagatagag tccacaccca attctttcaa gtagtccagc ttggctgtca ctcctttgaa
    18781 gtcaccgccc tggtaaagac cgcgtgggtt ggaggctgtt ccttccacta gcttgtcatt
    18841 gccggtgtct ccattataga aacggtctgt catcatgaag tagatgactt gctcgtccca
    18901 gtctttttca ccatctgcct tgatacgctc tgtaatggtc acatccaatt ttgtttcgta
    18961 gtaaccgttg tccttgtcat agacctttac aggaagacta tatgtccctg gcgctgtgct
    19021 agacgtcgct ttaatggtca cacgattgag ctcagtagag attggcacaa gacctccacc
    19081 gatggcactt gtatcgactt ccattttgac tatttcagca ttttcagggt tggtgacggt
    19141 tacagatacc aagccacttt cattgtagtt gaatggtgct ttcacacttg ccccaacagt
    19201 cacatttttt gtacctggag tagctttact tgtatcgagt tctactttct cttcgataaa
    19261 atatggattg gtatagactt tgtcgtcgtc attgcgaagg aaaatttggc tatgccgttt
    19321 acgatctgca aaggctaaat caattgtttt attgcctgcc aaatctggat tattctgatt
    19381 gattagcaga aatccaagct tggaatctaa accattcgat agaggaatgt caacataggc
    19441 gccgtatttg ccaagtttaa agtcaacggc acctgctggc cagccgctac ttgcttcagt
    19501 cgtatctccc caagtccata cgccccaacc ttcataatta ttgtcttcac gggtgtagtt
    19561 gatacggagg acattttcat ctttgagtgg ctcataacta gacacgctat aatcactagc
    19621 aatccaagcc tcattttgtt ccggaacaag tagctccact ttctggtccg attctgttat
    19681 tttttcccca ttcttgagaa ccagataacc aatcgttcct ggtgtctcag attttttaat
    19741 atcaacgtaa tggccgtagt catctacctg actgcttgaa aagttcgctg tatccgttgg
    19801 ccattgattg ccatcggacg gctctgccac tcctccccaa gtccaaagtc cttgactttc
    19861 tggtgctgtt tcatctacat tttcaaagtg cagacgaatg ctgccttctt cgataggagc
    19921 ttcctctgga gcagttgcat cggctgtttc tgttaccgct gtcgcttcag ctaccataga
    19981 atctgtagct tctatcgcag ttgtggtcgc ttctaccgcg ccgccatcct gttccgaaag
    20041 agtcgttgaa ctagttgacg cagggaggac aacttcctct gcctgcacta gttgacctgc
    20101 tccacttaaa aacagagcag ccgcaatccc aacagaggct acacctacat ttagtttacg
    20161 aatgccaaaa atctgtttct tctctagcat ccctgttcgt ttcatattct gaacggattt
    20221 ctttttcata gactcctcca tataaataag tttgaattgt acactaccag tatatacaat
    20281 tccaaggagt ctttgcaaac gttttcttaa atgttaacgg taacaagttt taagctacta
    20341 tctaacaaaa atagaataaa tagctccccc ttcttttgct cctagaccgc ccactgacca
    20401 aaaaaagaga ctactgaggt gtagtctctc tttcaattaa agttgcctgg cagtaatgcc
    20461 cctgtctagc cagaggcttg ccatccaata tcgtcattaa atgtttgacg ctaagagccc
    20521 ccatttgacg aatcggctgc ttcatcgtcg tcaaggctgg cctggacatc ctatctaaaa
    20581 agaagccgtc aaaaccaatc accccaacgt cattcggaat agactttcct agagcttgta
    20641 aacctcttgt aaccccaaga gcgagacgat ccgatgcgca gataaagcag gtgttttctg
    20701 gtaaataatc aagatttttc acaaattctt ccgcaacacg agaacgattt tccaatcgat
    20761 agagatgagt ttctcggccc tgcatcgcat ctttgtaacc ttcttctctc cctttttcaa
    20821 aggcttctgg caagtcaatc cctacaaaaa caatcctctc ataacctttt gataaagcaa
    20881 actgagttgc ggacctagtc gccaaacgat tgtctgaatc tacaaaagga aggccttctt
    20941 gattctcccc aaataaaatc aatggcttcc gcagcccttt caaccaaggg tagtcatcct
    21001 tgcgagcgcc agtcacaatg taaccatcac attgatcagt aatctgactt ggattggtca
    21061 ccaactgcaa ggtataattt cgatgattga gctcatcagc gattcctgca agaaggtcga
    21121 tatagtacgg ctctaccaca tccatctttt cgagaatgac agcctgaaca atcagtgtcc
    21181 gttgctgggc caaggccttg gccgccacat ttggcttata gtttaattct tccatcgcag
    21241 ctgttacgag cgtccgcagc tcttgtgtaa cttgttctgg atggttgatg acacgcgaaa
    21301 cagtcatctt tgatacattg gctaacctag ccacatcggc taatgtcgtc atagaactcc
    21361 tccctaattc tatttctgtt gcttatcttt tagcaagcaa acagtcaaaa ttgtgcaaac
    21421 gttttcttta ggttattata tactatttat tactaaaaag taaagacctt tcgaatacat
    21481 ttatcgtcat ttagttttcc ttctattact tccttagctc ccttgcctaa cttcatctat
    21541 gcctgcggtt catcgcctcg tgctaaaagt actatctaag aatacccatt ccctctaaac
    21601 aaaaaatact ccaaccgcta gaccaatcaa tgtctaacaa ttgaagtatc tttgtcaaat
    21661 tctgtccatt ttctatacga ttatggaaat gaatgagata aattaatttg cttagcttac
    21721 tcaacatcta ccttttgaat gcgagctaag aattgcttag tacgttcttc ttgtggacgg
    21781 tcaaaaatgt cttctggtcg accttcttcg ataatccgac caccatccat aaatatgact
    21841 cgatcagcta ccgcacgcgc aaagcccatc tcgtgcgtca caaccaccat ggtcatacct
    21901 tcttttgcca actgcatcat gacagccaag acctcaccga ttaactcagg atccaaggcc
    21961 gaggttggtt catcaaaata aatgacctct ggattggtcg caatggctct ggcaatgccg
    22021 acccgttgct gctgacctcc tgatagctgg cttggataga aaccatattt atcagatagt
    22081 cccaccttat ccaaggctgc tttaccgatt ctttcagcct cttgtttggg tactttccga
    22141 gccacaatca gaccttccgt cacattttgt aaagcagtct tgttggcaaa gagattatag
    22201 ttttgaaaaa cgaaggctgt gcgcttgcga atgcctgcaa tttccttctt ggtcatctga
    22261 gccaagtcat agctgtcctc accgaagact aagtgacccg cgtcagcttt ttccaaaaag
    22321 tttaaagaac gaagaagagt cgtttttcct gatccagacg gacctaaaat gacgaccacc
    22381 tcacctggat tgacctctac atcaattcct tttaacacct gctgaccacc gaaggtcagc
    22441 tttactccac ttgcttgaat catctgaacc tcctagtaaa cggctaattt cttctcacca
    22501 taggcttgaa gcttggtcaa aatggttgaa aagagtagat acacaagggc cacctcacaa
    22561 tagagggcaa acggttcgta ggtccttgct gcaatctgct gagttgccat aaacatctcc
    22621 aagacggtaa tattggcagc cagcgatgta tccttgacca atccaatcaa ggtattggac
    22681 aagggcggga aggccactcg aaaggcctgt gggagaataa tccgacgcat ggtctgggca
    22741 aaactcatcc cgacagaata gccagcctcc aactgcccct taggcacgga ctcgatagaa
    22801 gcccgtatgg tttccgcagc gtaggcacct gtattgacag aaaaaaccaa aaccgccgac
    22861 ggaaaggcat ccaagacaat tcctagactt ggtagcccaa agaatatcac atagagttga
    22921 accaagagtg gtgttcctcg aacaacccaa atatagaaac gagccacttg tttgagaatg
    22981 ggaatctgag caatttgcac caaagccgtc ccaatagcaa ttaacaagcc aaaggtaaaa
    23041 gacaggattg tcagtgggat agtcaccaac aatcctggaa caagtatctg tgaaaatgaa
    23101 tcaagcaata gttgccatac tctttctgtc attgtttctc ctgattactt agcttttgat
    23161 acgtcttcac caaagtattt gtttgaaatt tcagctaatt ttccttcact agccaattct
    23221 gccaaggctg catcaatctc tttcacaaga tcttcatttc cttttgcaac tgggaaggct
    23281 gttgtcgata cgtcatccgt caaggtcaca accttaatcg gtgcatcagc atgctgtttc
    23341 acataatcca agtacaccaa gttgtcattg atggtagcat ccacacgccc tgtatttaac
    23401 aattcaactg cctgagagaa tccatccaca ccgacaactt ctgcaccatt ttcacgcgcc
    23461 aaatttgccc agttacttgt caagctgttg actgattttt taccagataa atctgcaaag
    23521 cctgtaatgt cagtattatc tttttgcgtc accaaggctc catagatgta tgtatatggt
    23581 gttgaaaaat cgtattttgc cttacgctca tctgtaatac cgacttggtt agcgatagta
    23641 tcaaaacgag ctgcatccaa acctgcaatc atggaatccc attctgtttc aacaaattcc
    23701 accttgacac ccaatttctc agcaacggct tctgctactt ctacatcata accgaccaat
    23761 tttccgctct catcgtggta agagtaagga gcataggcac cttcagtacc gatttgaata
    23821 acgccttctt ccttaatttg tgccaagagg gtttggtctg tactattcga tgtacctgca
    23881 gatgaattgc aggctgctaa cacgatacct gcatacaata aacttgtaaa catagctatt
    23941 ttcttcataa ttaaaacaca ctttcttttt cagattttac aatagtatca tgaataacaa
    24001 tttccagcca atatattttt tctatcgggg acattaaaaa ttttaatcaa gtatcggagc
    24061 ataaaaaaag acctactcgg tctttatatc tcatattaat ttactccagc tggtgggtaa
    24121 atatagctga ctgttccttc gctagtcgtt gttggatcaa agaaacctct gacaccatat
    24181 tggtagccaa agcagccttt gcagcggcag cagctttctc agccacaatt ttttctgcag
    24241 cagctttggc tgctattttt gcagcttcaa ccttttttgt taacgctgat actgtcggac
    24301 tatcgcttat aactgtgtca tctgcactga cattcaccat tcccaaccat aaaagatttc
    24361 ctatgagggc tgtaaacagt cccaatttga attgtttttt tatcatttga taactcataa
    24421 tatttgattc cttcgtgttt ttctgcccta tctatcctaa gggataatcc ttgcagagag
    24481 cttaaaggaa tgtaacaaat attacagata acttgcaatc tcttaacaat cacagtgtcc
    24541 ggactttttg tcaaaaaaac gacctccaat acggaagtcg ttt
//
LOCUS       DASFRC010000010        23824 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.010, whole genome shotgun sequence.
ACCESSION   DASFRC010000010 DASFRC010000000
VERSION     DASFRC010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 23824)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23824)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23824
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.010"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            91..318
                     /locus_tag="U1087_000312"
     CDS             91..318
                     /locus_tag="U1087_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001870927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM4754829.1"
                     /translation="MRYRRIKDLREDADFTQEFVANYLFCSQASYSRIESGKRGLSIE
                     DLIRLSNLYCVSTDYLLGLSDYPKRIKKNIK"
     gene            604..843
                     /locus_tag="U1087_000313"
     CDS             604..843
                     /locus_tag="U1087_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HEM4754830.1"
                     /translation="MTKVVKIKYIPVENSIAEWATKKSLMKRWDGLNIHTLNRWLSEM
                     RENKKFKHYVINPTHKLVFINLDGFEEFLTWKEKN"
     gene            933..2453
                     /locus_tag="U1087_000314"
     CDS             933..2453
                     /locus_tag="U1087_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM4754831.1"
                     /translation="MFYKRRETKTGKIRFEVGDSYKDPLTGKWKTASVSYYKDTSSAR
                     KKAEFELQEKIENLLNVTQSKINVETILTFKDLREAWFESWCVSVKKQTADREKLVLK
                     RLGEIIGDDYLLTSIKPLLLEKILKDYIRIYDCSASTFSHIRSSLNKILNYGVLHQIY
                     QYNPLLAVKINVSKSKKRKAKLRKKMQFLEVHELLVFFEELSKRRNPNYYDLAIFLLF
                     TGIRIGEAGAVVESSVDLEKAILDVSRSLQSHDLKVDDFYYDEIKTDESERYVRLPQI
                     AVDAYLRALQRSNEFDKYMFKNPKKSFRKSSSVFRTEYGSPITSHSFREIISRIETDL
                     KKNCMERYGFEWKKHVTPHSFRHMHITYLQRGDAPVPLKEIMERVGHVNPETTMGYTH
                     STIESQNQSILVMEKFALDNNFNFKDLKIWKCKYSQSVFELIEENIEQKSLECSLSTF
                     RTLIGINESYAPRHITANILPRVKEDISKYIDHFEIITIRKQDTSQKVDGYKFVWG"
     gene            2545..3396
                     /gene="ylqF"
                     /locus_tag="U1087_000315"
     CDS             2545..3396
                     /gene="ylqF"
                     /locus_tag="U1087_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase YlqF"
                     /protein_id="HEM4754832.1"
                     /translation="MAIIQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPM
                     LTKIVGDKPKLMILNKVDLADPVRTKEWQSYFEGQGIRTLAINSKEQATVKKVTDAAK
                     SLMKDKIERLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQ
                     WLKSNKDLEILDTPGILWPKFEDQEVGLKLALTGAIKDQLLPMDEVTIFGLDYFKANY
                     PERLEERFKGMDLEQETPELIMDWTKKLGFRDDYDRFYNLFVKDVRDGRLGTYTLDRV
                     SDLDGND"
     gene            3383..4156
                     /locus_tag="U1087_000316"
     CDS             3383..4156
                     /locus_tag="U1087_000316"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HEM4754833.1"
                     /translation="MATIKEVTALLAQVDNLDSPVWADLAQDDRAGVQTAIKKRQKEL
                     EKEAAEDARLEAMLCYEKALYENGVEFIAGIDEVGRGPLAGPVVSAAVILPKGCKIRY
                     LNDSKKIPKSKHEAIYQEVMERAVAVGVGIKDAAVIDQVNIYEATKLAMLEALGQLSQ
                     EPEHLLIDAMKLDTPLPQTSIIKGDANSLSIAAASIVAKVTRDKMMADYDKEFSGYGF
                     AKNAGYGTAEHLEGLNKLGITAIHRKTFEPIKSMVAGGN"
     gene            4159..5166
                     /locus_tag="U1087_000317"
     CDS             4159..5166
                     /locus_tag="U1087_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015445222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HEM4754834.1"
                     /translation="MTVFFWLFLAAIGLFVLVYFWERRSIFISLFALNILVWALAWII
                     STGILENNEILRLLAIALAMVLALAFLSGPFVLLFTLYLNGFRILKREGVRFHNFLSL
                     GLAIGLTFYLFIAPSVASTLSGISFFNMVFVYVGFLVSYAIIISMLYTTSSFVNLVNL
                     FPGKLDYVVVLGAGLIGDKVTPLLASRIDKGIAIYQKHPGSKLIMSGGQGPDEIIAEG
                     QAMANYALEQGIPAEDIIIENQSTNTEENLKFSYALMKSGSRFALVTNYYHVFRALLL
                     ARKLKIKCIGYGAKTKFYFSLNAFIREFVGYVVMSRKAHLVFLGIVSVLYLLGMIISL
                     M"
     gene            complement(5204..5854)
                     /locus_tag="U1087_000318"
     CDS             complement(5204..5854)
                     /locus_tag="U1087_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002286719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HEM4754835.1"
                     /translation="MNPSLKLSLKLSFGEEVANSVTHAVGALFMLILLPITAIHSFQD
                     YNVTAVVGMSIFVISLFLMFLSSSIYHSMPYASTHKYILRIIDHSMIYIAIAGSYTPV
                     ALSLVGGWLGYLIVGLQWGLTIFGILYKIFAKKINEKFSLFLYLFMGWLVVFILPAIL
                     QKTGLIFGILMLAGGLSYTVGAIFYSKKKPYFHMIWHLFILLASALQYIAIVYFMI"
     gene            complement(5844..6395)
                     /locus_tag="U1087_000319"
     CDS             complement(5844..6395)
                     /locus_tag="U1087_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1836 domain-containing protein"
                     /protein_id="HEM4754836.1"
                     /translation="MKQTIPYWHELPDLDLYLDQVLLYVNQVVNSQESLEQKSLYSMK
                     INSSLGNETDDRTGVHQGKLTTDNVDIRRVLTAAMINNYVKHKQLEKPVKKKYQKQQV
                     ARLIALTILKNVFSIQEISQTLHLLRQTDSSEILYNHFVDCMRNEENEETPDIIRYAC
                     QSVKLYYKTRQLTMELERKFHES"
     gene            complement(6492..6803)
                     /locus_tag="U1087_000320"
     CDS             complement(6492..6803)
                     /locus_tag="U1087_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEM4754837.1"
                     /translation="MQEKHEQTITLTAAELLGLIQTESVQLLDVRDPEEYSAGHIGGA
                     INCPMDRIAAFDGPVDQHYLLICKSGKRSKLAREIMSSKGFKANDIAGGMEAWDGLIV
                     K"
     gene            6948..7406
                     /locus_tag="U1087_000321"
                     /pseudo
     CDS             6948..7406
                     /locus_tag="U1087_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002904502.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sugar O-acetyltransferase"
     gene            7465..8307
                     /gene="dprA"
                     /locus_tag="U1087_000322"
     CDS             7465..8307
                     /gene="dprA"
                     /locus_tag="U1087_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HEM4754838.1"
                     /translation="MNNFELFKWKKAGLTNLNVNKVLAYQEKHGKKLTLRNVAIVSEC
                     KNPVLFMENYKNLDTKACREEFNKYPSFSILDDIYPLALKQIYNPPVLLFYQGDLELL
                     EKSKLAVVGTRNASKNGIQSVQKIIKELNNRFVIVSGLARGIDTAAHIASLKNGGQTI
                     AVIGTGLDNIYPKENKDLQTYIGKHHLVLTEYEAGAQPLKYHFPERNRIIAGLVEGLV
                     VCEAKMRSGSLITCERALEEGREVYAIPGSIMDGKSDGCHHLIQEGAKCVTSGLDIIS
                     EYQF"
     gene            8400..10493
                     /gene="topA"
                     /locus_tag="U1087_000323"
     CDS             8400..10493
                     /gene="topA"
                     /locus_tag="U1087_000323"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005591982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HEM4754839.1"
                     /translation="MATKTVSKKKTTTNKNLVIVESPAKAKTIEKYLGKNYKVVASVG
                     HIRDLKKSSMSIDFDNNYAPEYINIRGKGPLINSLKKEAKNAKQVFLASDPDREGEAI
                     SWHLAHILGLDANDKNRVVFNEITKDAVKNAFQEPRTINLDLVDAQQARRVLDRIVGY
                     SISPILWKKVKKGLSAGRVQSVALKLIIDRENEISNFKPEEYWTIDATFKKGSKKFQA
                     SFYGIDGKKTKIENNEQVKEILARLDGDDFLVEQVERKERKRNAPLPYTTSTMQMDAA
                     NKINFRTRKTMMVAQQLYEGVSLGTGGTQGLITYMRTDSTRISPVAQAQAADFITERF
                     GATYSKHGNKVKNASGAQDAHEAIRPSNVNLTPESIAKYLDKDQLRLYTLIWNRFVAS
                     QMAAAVFDTMSVRLGQNGIVFAANGSQVKFDGYMAVYNDADKNKMLPDMEQGDTVVRA
                     STNPEQHFTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVKLAAKRFEPT
                     ELGEIVNKLIVEFFPDIVNVKFTADMEQKLDDVEIGKEQWQKVIDGFYQPFKVELSKA
                     EEQMEKIQIKDEPAGFDCDVCGHEMVIKLGRFGKFYACSNFPDCRNTKQITKEIGVTC
                     PVCQKGQVIERKSKRNRLFYGCDRYPECEFTSWDKPVGRSCPKCDHYLVEKKVRGGGK
                     QVVCPNGDYEEDKIK"
     misc_feature    10909..11043
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00557"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ribosomal protein L10 leader region; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00557"
     gene            11070..11564
                     /locus_tag="U1087_000324"
     CDS             11070..11564
                     /locus_tag="U1087_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001287276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HEM4754840.1"
                     /translation="MSEAIIAKKAELVNAVAEQMKAATSIVVVDARGLTVEQDTVLRR
                     NLRGAEVEYKVIKNSILRRAAEQAGLEGLAELFVGPSAVAFSNDAVAPAKTIYDFAKT
                     ADALEIKGGAVEGKVSSKEEIEALATLPNREGMLSMLLSVLQAPVRNVAYAVKAVAEK
                     EDAA"
     gene            11630..11995
                     /gene="rplL"
                     /locus_tag="U1087_000325"
     CDS             11630..11995
                     /gene="rplL"
                     /locus_tag="U1087_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018371186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HEM4754841.1"
                     /translation="MALNIENIIAEIKEATILELNDLVKAIEEEFGVTAAAPVAVAAA
                     GGAAEEAKDSFDVELTSAGDKKVGVIKVVREITGLGLKEAKELVDGAPAMVKEGVATA
                     EAEEIKAKLEEAGASVTLK"
     gene            12255..12428
                     /locus_tag="U1087_000326"
     CDS             12255..12428
                     /locus_tag="U1087_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017767814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754842.1"
                     /translation="MQKNEQSSRQIVMCHLMAIMGIDIEKATWIVGEMEESGLIQFDD
                     MGNVGLLVLEGQS"
     gene            12425..13249
                     /locus_tag="U1087_000327"
     CDS             12425..13249
                     /locus_tag="U1087_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017648301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiator protein A"
                     /protein_id="HEM4754843.1"
                     /translation="MKRITANHYQTSERYYKLPKLLFESERYKDLKLEVKVAYAVLKD
                     RLELSLSRGWIDEDGAIYLVYSNSKLMALLGCSKSKLLTIKKTLREYGLIDEVQQSSS
                     EKGRLANKIYLGELEHEPIPVSNSDGGGVQKTLGGYQNQPGPVLTSATSETEVSETDR
                     SETKESESVIEDEEEKESLTSKKCDNDNFQRKVDRVTRYDRDYIWGLVHDQLRQVGLS
                     QAASDYVMIYFDHRYQYALENMRFADRAETIAEYVFNGVLSEWTKVQRLKELKGGE"
     gene            13407..14762
                     /gene="dcm"
                     /locus_tag="U1087_000328"
     CDS             13407..14762
                     /gene="dcm"
                     /locus_tag="U1087_000328"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000670034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA (cytosine-5-)-methyltransferase"
                     /protein_id="HEM4754844.1"
                     /translation="MKFLDLFAGIGGFRLGLTRQGHECIGFCEIDKFARKSYKAIYET
                     KGEIEFHDIRQVTDQDFRQLRGQVDIICGGFPCQAFSLAGRRLGFEDTRGTLFFEIAR
                     AAKQIQPRFLFLENVKGLLSHDKGETFRTILATLDELGYDAEWQVLNSKDFQVPQNRE
                     RIFIIGYSRRYRPRFLFPLRGENSSASLERLGNVNPSGKGMNGEVYLSRGLAPTLTRG
                     KGEGTKIAIPILTPDRLEKRQHGRRFKGNDDPMFTLTSQDRHGVVVAGTLPTTFVQTG
                     RVYDLSGLSPTLTTMQGGDKVPKILCREEAPHLKIREATKLGYAKAIVGDSVNLAYPE
                     STKRRGRVGKGISNTLTTSDNMGVVVAALEYRKDKWYEVTGIILDGKLYRLRIRRLTP
                     RECFRLQGFPDWAYDRAERVSSKSQLYKQAGNSVTVTVIEAIAREFRKIEEEEKHEII
                     T"
     gene            14746..15174
                     /locus_tag="U1087_000329"
     CDS             14746..15174
                     /locus_tag="U1087_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000770700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754845.1"
                     /translation="MKLLHNKSIRNCTELEEAIHQAEVERFSEMIASLPNYDCDIDVT
                     FEDDYHKEMNYPLAYESNLHRIFEFIETQDIKNGVDTYLTDENNLAFRAYGQGYSWND
                     KNDVVTTLITVKYFGEGRSPIDMSKVFTPLTQALEKELSV"
     gene            15184..15567
                     /locus_tag="U1087_000330"
     CDS             15184..15567
                     /locus_tag="U1087_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017649786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754846.1"
                     /translation="MLEIYLSRNTSRNQKLLSFCDSHGISYSCKEVSHLSREELLRLF
                     TKSSDCFTLLSPSLQRFKGHREMKLSELVTVVLRKPDQNLRLPIVVCEDKVYPDMSLE
                     EARTFLPRSQKVVSFREHLFKDLVT"
     gene            15577..15810
                     /locus_tag="U1087_000331"
     CDS             15577..15810
                     /locus_tag="U1087_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003065178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM4754847.1"
                     /translation="MNDRFWENLEIIVMEKGLSWADLARQMFKGQYVYPSEFNRLYQT
                     FRHYKSHRLMPQGKWVEKIVTVLEIDYEDLFRR"
     gene            15813..16301
                     /locus_tag="U1087_000332"
     CDS             15813..16301
                     /locus_tag="U1087_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018165725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM4754848.1"
                     /translation="MKRLLVMYGAIHVNVLLVSLYLVGWLNGAWLPVLQVTFLALLLW
                     GWKRFKIPKRNLSLKERGLWLLGSLGVMVSIVFLLNASVVEEVFYREVLWGVLPQPVV
                     QVLLTSSLFALAHHPSSLFTWVLYGSLGLTLGVARGQTDCLSSTLVHLSWNGIVFFLS
                     LL"
     gene            16379..16867
                     /locus_tag="U1087_000333"
     CDS             16379..16867
                     /locus_tag="U1087_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017648298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754849.1"
                     /translation="MSSEQQERQAIQYAERSTMFTVKVLLKLLEWSARHALAQDSAYK
                     VGVQKLEELLQSPYAIESLNISKDILDKPVDVGKFKELVESENLPIAISWQGDYLHFY
                     AKDKSLLDKHLDELLQKLVSNPEKLKGLTMDKTLDEEIAQAKEQIVMSEPSAVKTKEV
                     IL"
     gene            16867..18687
                     /locus_tag="U1087_000334"
     CDS             16867..18687
                     /locus_tag="U1087_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003086094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretory system conjugative DNA
                     transfer family protein"
                     /protein_id="HEM4754850.1"
                     /translation="MVSGKKVFIFGILGLALGYFCHRLVLLYDSLPNQPPLERLAYLL
                     GEGQNQVLNPLWNGNFTGKSVLGFCFGFVTMGLVYLYVSTGQKVYREGAEYGSARFGN
                     SHERKAFLSKNPFNDTILSRNVRLTLLEKKAPQFDRNKNLVVIGGSGSGKTFRFVKPN
                     LIQLNCSNIVVDPKDHLAEKTGKLFLEHGYQVKILDLVNMTNSDGFNPFRYVETENDL
                     NRMLTVYFNNTKGNGSRSDPFWDEASMTLVRAISSYLVDFYNPPGSTKEEADSRRKRG
                     RYPAFSEIGKLIKLLSKGENQDKSVLEVMFEIYAKTYGTENFTMRNWADFQNYKDKTL
                     DSVIAVTTAKFALFNIQSVIDLTKRDTLDLKTWGTQKTMVYLVIPDNDTTFRFLSALF
                     FSTVFSTLTRQADVDFKGQLPIHVRSYLDEFANVGEIPDFAEQTSTVRSRNMSLVPIL
                     QNIAQLQGLYKEKEAWKTILGNCDSLLYLGGNDEETFKFMSGLLGKQTIDVRSTSRSY
                     GQTGSGSTSHQKIARDLITPDEVGNMKRDECLVRIAGVPVFKEKKFFPLKHKNWKYLA
                     DKESDERWWHYHIDPLKTEEVPFEPSDHKVRDLSKESTLH"
     gene            18705..18947
                     /locus_tag="U1087_000335"
     CDS             18705..18947
                     /locus_tag="U1087_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012678629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754851.1"
                     /translation="MNQKFTGFVYGVDASSMFAQAMVLLQKGMVATGAFLVVMGIINL
                     STNIKDGGPGVRNAILEIVGGVMVGAAGAFITQITI"
     gene            18964..19818
                     /locus_tag="U1087_000336"
     CDS             18964..19818
                     /locus_tag="U1087_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017649781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HEM4754852.1"
                     /translation="MNNTLPSAFVFLASEKISSDSLFEGFNVDLESTANLVKSLADYN
                     PTVWSYMSAITKGVMQPLGVAILAAVLVLEFSKMAKKIANSGGAMTFEAIAPMIVSYI
                     MVAVVITNTTVIVEAILAVASHIIEGVAGVVSHGGTTYETISGLKGSGIIGKLIVGFF
                     AILIWLVRLVSVMVVNLLITIRFIQLYLMIPFAPLTIPTFLSDDWRSVGIGYLKNIMV
                     YALQGVLIFLIISLVPLFESVGKLALSNGAGVMETLATAFGGLVQAILLIIALVGSQR
                     TARSILGM"
     gene            19880..20233
                     /locus_tag="U1087_000337"
     CDS             19880..20233
                     /locus_tag="U1087_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PrgI family protein"
                     /protein_id="HEM4754853.1"
                     /translation="MNTRVFKDITKVQHRAWLGFTTRQVIFVLPAVAITILILGLNLF
                     YWQFGDWFVYGLIFTFTIPLMLFGVYRPNDLPFETYLNYRWHYEMTIPDRTLTGQKGI
                     QREKNKSLNETKDLF"
     gene            20190..22541
                     /locus_tag="U1087_000338"
     CDS             20190..22541
                     /locus_tag="U1087_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006738651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM4754854.1"
                     /translation="MKKTNRSMKPKTSSKYKKTRKPKEEVLPTTVNTLLYQGLFPNGL
                     MQVTPDYFSQSFLLGDVNYQTVGLEDKGAIMETYSDLINSLDDKTNFQLTIFNQRVNL
                     DKFRKGVLYPLHEDGYDTYREELNRIMENNLEAGENNFSAVKFISFGKSDQNPKLAYR
                     SLSQIGEYFKSGFSEIDANFTLLSGESRVNHLADMLRGENHLPFTYQDLVRSGQTTKH
                     FITPTSLSFKHKNYVEIDDRLLQIVYVRDYGMELGDKFLRELMQSDLEVMISLHAKGA
                     AKSEAMTKLRTKKTLMESQKIGEQQKMARSGVYLEKVSQVLESNIDEADELIKTMTQT
                     GDKLFDTLFLIGVFAEDEDQLKHSLDIIKQVAGSNDLVIDNLTYMQEAAFNSLLPFGK
                     NYLEGVSRSLLTSNIAVNSPWTSVDLQDKGGKFYGINQISSNIITIDRGKLNTPSGLI
                     LGTSGAGKGMATKHEIISTKLKEADTDTEVIIVDPENEYSIIGQAFGGESIDIAPDST
                     TFLNVLDLSDDNMDEDPIKVKSEFLLSWIGKLLDRKMDGREKSLIDRVTRLTYKHFET
                     PSLVEWVFVLSKQPEQEAKDLALDMELYVEGSLDIFSHRTNIKTDSHFLIYNVKKLGD
                     ELKQIALMVIFDQIWNRVVKNQKLGRKTWIYFDEMQLLLLDKYASDFFFKLWSRVRKY
                     GAIPTGITQNVETLLLDANGRRIIANSEFMILLKQAKSDREELVHLLGLSKELEKYLV
                     NPEKGAGLIKAGSTVVPFRNKIPLQTQLFDIMSTDPEKMRGES"
     gene            22538..>23824
                     /locus_tag="U1087_000339"
     CDS             22538..>23824
                     /locus_tag="U1087_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017649001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HEM4754855.1"
                     /translation="MTREQQNVKVARKTFQSSLKASRIHYRREKKGLKRSLPKRRFIM
                     RRAEKAETREQRQALKQTYQEEKDLATDTFKEAIAYVSPRWLKSKEIKKYRLPQARQR
                     LVVARKHLAEVKKAEKEEAVTSKVTDQKKPTESKTSRFQFQKEKPLERLQAEKEVKSA
                     KRDVKQLKKAHQFKNPSTKVKRGLRYVTSESLDVVAQDDDLEGIRTLKESVIKGRRYG
                     KFTYQSGKLLVKSGQTGLRFTKTKADHSKERYQNFKKGKGFTRQKPLKPRRRYQTFLK
                     QARKQSVSGITKVIQAIKNSLTFFSSIALNPMTWVVSGLLFFLLLMMSFVIGISGTTL
                     IQQDESELTKAYTHMTWEDAENTRTNPTGITYYTKIDDVMGFMNLKYQDYALEEIMEE
                     GDKTYQAYLSQLWQDLNGRDSLKSMLELSKESAYKLS"
BASE COUNT         7384 a         4379 c         5305 g         6756 t
ORIGIN      
        1 taatactcct taatgaacat ataccagttt ggtatattat tgaaaagtcc tgaatattca
       61 ccgatatact tgttatagga gtgaacagac gtgaggtaca gacgcataaa agatttaaga
      121 gaagatgcag attttactca agaatttgta gcaaattatt tattttgtag tcaggcctca
      181 tattcgagaa tcgaatctgg aaaacgtggt ctgtcaatcg aagatttaat tcgtctctct
      241 aatctatatt gtgtcagtac agattatctc ttaggattat cagattatcc taagaggata
      301 aagaaaaata tcaaatagtc cctcctggtc ctttgaaaat tgaatagacc gaggtgggac
      361 tttatttatt tgtcgagcag ttgaaagaga tacgcgatga tatgagcgaa aaaatatctg
      421 tttctaaaat tgggttggaa tccaatttgc catgacacaa ataatgttaa tgatacttct
      481 gaacgttcag gctctagtcg aaaaatggag caggtgagat tcctatgttg atgtccgaat
      541 caacccacca atgtcatgaa acttgtctca attttttgct acttatcttt tgaggaggaa
      601 ataatgacaa aagtagtaaa aataaagtac ataccagttg aaaacagtat tgcagagtgg
      661 gctaccaaaa aaagtctgat gaaaaggtgg gatggactaa atatacacac actaaatcga
      721 tggctttctg aaatgagaga gaataaaaaa tttaagcact atgtcataaa tcctactcat
      781 aaactggtat ttatcaattt agatggattt gaagagttcc ttacttggaa agagaaaaat
      841 tagccgataa ttttcagaag atgtgataaa atagagtgag ttaattctat tggctatcat
      901 attttctctt ttaaaaagaa agagagttca aaatgtttta taaaagaagg gaaacaaaaa
      961 caggaaaaat tagatttgaa gttggtgatt cttacaagga tcctctaact gggaaatgga
     1021 aaacagcatc tgtgtcttac tataaggata ctagttctgc acgaaaaaaa gctgaatttg
     1081 aattacagga aaaaattgaa aatttactca atgttactca atcaaaaatt aatgtcgaga
     1141 caattctcac atttaaagat ttgagagaag cttggtttga gtcgtggtgt gtctcagtca
     1201 aaaagcaaac agcagataga gaaaaattgg tactgaaaag attgggtgaa attataggtg
     1261 acgattatct tctaacctca ataaaaccgt tacttttgga aaaaattttg aaagactata
     1321 ttcgaattta tgattgctca gcttcaacgt tttcacatat tcgaagtagc ttgaataaaa
     1381 ttctaaatta cggtgtttta catcagattt accaatataa tccactttta gcagttaaaa
     1441 taaacgtatc caaaagtaaa aaacgtaaag ctaaattgag aaagaaaatg caattcttag
     1501 aagttcatga attattggtc ttctttgaag agcttagcaa gaggaggaat cccaactact
     1561 acgatttagc aatttttctt ttatttactg gtattcgaat tggggaagca ggagctgttg
     1621 tagaatcatc tgtggattta gaaaaagcta tattagatgt ctcccgttca ttgcagtcac
     1681 atgacttaaa ggtagatgac ttttattacg atgagataaa aacagatgaa tctgaaagat
     1741 atgttcgtct tccgcaaata gcagttgatg cttatttacg ggctctgcaa agaagtaatg
     1801 agtttgataa gtatatgttt aaaaatccaa aaaaatcgtt caggaaatca tcatctgtat
     1861 ttaggacaga atatggctct cctataactt cacattcttt tagagaaatc atatcgagaa
     1921 ttgaaacaga tttgaaaaag aattgtatgg agcgatatgg atttgagtgg aaaaaacatg
     1981 taacgccaca ttcctttaga catatgcata ttacatatct tcaaagaggg gatgcacccg
     2041 ttcctctcaa ggaaatcatg gaacgtgtgg gacatgtgaa ccctgaaaca actatgggct
     2101 atacccatag tacaatagag tctcaaaatc aatctattct tgtaatggaa aaatttgcat
     2161 tggataacaa cttcaatttt aaagatttaa aaatatggaa atgtaaatac tcgcaatcag
     2221 tatttgagtt aattgaagag aatatcgaac aaaaaagttt ggaatgttct ttgagtacat
     2281 ttagaacgct aataggaata aatgaaagtt atgcacctag acacataaca gccaatatat
     2341 tgccaagagt aaaagaagat atttcaaaat atattgacca ttttgaaatc attactatca
     2401 ggaaacaaga tacaagtcaa aaagttgatg gatataaatt tgtttgggga tagtttaatt
     2461 taaatttttg gtttattttt ggttttttgt gcatttttaa aaaccaaggg tcttaaaccc
     2521 ttgctaggaa aggattttta ctacatggca attattcaat ggtttccggg ccacatgtca
     2581 aaagctcgca ggcaggtgca ggagaacatc aagcacgttg atttcgtgac cattttggtc
     2641 gatgctcgcc tgcccctatc tagccaaaat cctatgctga ccaagattgt cggtgacaag
     2701 cccaagctta tgattttaaa taaggttgat ttggcagacc ctgttcgtac caaagaatgg
     2761 cagagctact ttgaaggtca aggcatccgt acccttgcca tcaactcaaa agaacaagcg
     2821 acggtgaaaa aggtgaccga cgcagctaaa agcctgatga aagacaagat tgaacgccta
     2881 cgcgagagag gtattcaaaa agaaaccttg cggaccatga ttatcggtat tccaaacgct
     2941 ggaaaatcca ccctcatgaa ccgtctggct ggaaagaaaa ttgccgttgt cggcaacaaa
     3001 ccaggtgtga cgaaaggcca acagtggctc aaatccaata aagatcttga aatccttgat
     3061 acacctggga ttctctggcc taagtttgaa gaccaagaag tcggtctcaa gttggctctg
     3121 actggtgcca ttaaggatca gctcttgccc atggacgaag tgactatttt cggtctggac
     3181 tatttcaagg caaattatcc agaacgccta gaagagcgat ttaagggtat ggatttggag
     3241 caggaaacgc ctgaactcat catggactgg acaaaaaaat taggcttccg tgatgattat
     3301 gaccgttttt acaacctctt tgtcaaggac gttcgggacg gtcgtttggg tacttataca
     3361 ttagacaggg tgagtgactt agatggcaac gattaaggaa gtgactgctc tgctggctca
     3421 ggtggacaat ctggacagtc ctgtctgggc ggacttagct caggatgatc gagcaggggt
     3481 ccagactgct attaagaaac gccaaaagga gttggaaaaa gaagcagcag aagacgctcg
     3541 cttagaagct atgctatgtt acgaaaaagc cctttatgaa aatggggtgg agttcatcgc
     3601 tggtatcgac gaagtcggtc gggggcctct agcaggtcct gtggtgtctg cggcggttat
     3661 cttgcccaaa gggtgcaaaa tccgctacct caacgactcc aagaaaatcc ctaagtccaa
     3721 gcatgaagca atctaccaag aagtcatgga gcgagcggtg gcagtcggtg tgggaataaa
     3781 agatgcagct gtcatcgatc aggtcaacat ctacgaggcg accaagttag ccatgctgga
     3841 ggctttgggg cagttgagcc aagagcctga acaccttttg atagacgcta tgaagttgga
     3901 tacacctcta ccgcaaactt ctatcatcaa gggagatgcc aatagcctat ctatcgcagc
     3961 tgcctctatc gtggccaagg tgacgcggga taagatgatg gcagactatg acaaggagtt
     4021 ctcaggttac ggtttcgcta agaatgctgg ttatggaacg gcagagcatt tggaaggctt
     4081 gaacaagtta ggcatcacgg ccattcaccg caagaccttt gagcccatta agtctatggt
     4141 agcagggggg aactagtttt gacagtcttt ttctggttat ttttagcggc tatcggcctg
     4201 tttgttctcg tttatttctg ggagcggcgg tcaattttta tctcactgtt tgctttgaac
     4261 atcctggtct gggccttggc atggattatc tcaacaggca ttctcgaaaa caatgaaatc
     4321 ttgcggttat tggcaatcgc tctggcaatg gtattggcac tagccttctt aagtggtcca
     4381 tttgtcttgc ttttcacact ttatctaaat ggttttcgga ttttgaagcg agaaggtgtg
     4441 cgcttccata actttttatc tttaggattg gctatcggct taacttttta tctctttatc
     4501 gcaccgtctg tagcaagcac cctttctggt atcagttttt tcaatatggt gtttgtctat
     4561 gttggatttt tagtgtccta tgccattatc atcagcatgc tttatacgac atctagcttt
     4621 gtcaacttgg ttaatctttt ccctggaaag cttgattatg tggtggttct tggagctggt
     4681 ttgattggtg acaaggtgac gccacttttg gcttcgcgga ttgacaaagg catagcgatc
     4741 taccagaaac atcctggcag caagctcatc atgtcaggcg gacaaggtcc tgatgaaatc
     4801 atagcagaag gacaggctat ggctaattat gcattggaac agggtatccc tgcggaagat
     4861 atcattattg aaaatcaatc gaccaacaca gaagaaaatt tgaaattctc ctatgccttg
     4921 atgaaatcag gcagtcgatt tgcacttgta accaattact atcacgtttt cagagctctg
     4981 ctattggccc gaaaactgaa aatcaaatgt atcggctatg gcgccaaaac caaattttac
     5041 tttagcctca atgccttcat tcgggaattt gtaggctatg ttgtcatgag ccgaaaggcg
     5101 catttggtgt ttttgggtat cgtgtcagtt ctttatctgc ttggtatgat catcagttta
     5161 atgtagtaaa aacagcctct agaacaatct agaagctgtt ttcttatatc ataaagtaga
     5221 caatggcgat gtactgcagt gctgaagcca ataggataaa gagatgccaa atcatgtgga
     5281 aataaggctt tttcttagaa taaaagatag caccgacggt gtaggacaag ccaccagcca
     5341 gcatcaaaat tccgaaaata agtccagttt tttgaagaat ggctggcagg ataaagacca
     5401 ccaaccaacc cataaagaga tagaggaaga ggctgaattt ttcgtttatt tttttagcaa
     5461 aaattttata gagtataccg aaaatagtca atccccactg caaaccaaca atcagatagc
     5521 ccagccagcc accgaccaag gaaagagcga caggcgtgta gctcccagcg atggcaatgt
     5581 aaatcatgct atggtcgata atcctcagga tgtatttgtg agtagaagca tagggcatgg
     5641 agtggtagat ggaagaggac agaaacatga gaaataggct gataacaaag atagacatgc
     5701 cgactactgc tgtcacgtta taatcttgaa aagaatggat agcagtaata gggagtaaaa
     5761 tcagcataaa caaggcccca actgcatgtg tgacactatt tgcgacttct tcaccaaatg
     5821 aaagttttag acttaatttc aaactaggat tcatgaaatt tcctttctaa ctccatagtg
     5881 agttggcggg ttttgtagta gagtttgacg gattgacaag cgtagcgaat gatgtcaggc
     5941 gtttcttcat tttcctcgtt tcgcatgcag tcaacaaaat gattgtataa tatttcagaa
     6001 ctatctgtct gtcgaagaag atgtaaggtc tgactgattt cttgaatcga aaagacattt
     6061 tttaagatag tcaaggcaat caagcgggct acttgttgtt tttggtattt tttcttaaca
     6121 ggtttttcga gctgcttgtg cttgacatag ttgtttatca tggcagccgt taatactctt
     6181 cgaatatcaa cattatccgt tgtcaacttg ccttgatgaa ccccagttct atcatcggtt
     6241 tcgtttccta ggctactgtt gattttcatt gagtataaac tcttctgttc aaggctttcc
     6301 tgagaattga ctacttgatt aacatacagc agaacttggt ctaaatagag gtctaagtct
     6361 ggtagttcat gccagtaggg gatagtttgt ttcatgatta tctactctct tttatctagt
     6421 aatgataact agattatata atttttaaaa aataaagtaa agaaaaagga tgcttccttt
     6481 ccgaaatacc cttatttcac aatcaatccg tcccaagcct ccatgccacc tgcaatatca
     6541 tttgccttaa atcccttaga tgacatgatt tctctggcca gcttgctacg ttttccgctc
     6601 ttacatatga ggagatagtg ttggtcgact ggtccatcaa atgcggcaat ccgatccatg
     6661 ggacaattaa tagcaccacc aatatgacca gctgaatatt cttctgggtc acgaacatct
     6721 agcaattgca ccgattcagt ttgtatcaac ccaagtaatt ctgcagcagt caaagttata
     6781 gtttgttcat gtttttcttg catgattccc tctttcgttg gtttaaatta ataagtacga
     6841 taccaaatct tagctggact tgtcaagaaa gattgacttt tagaataaga aatcctatga
     6901 tatgtattaa gaagaaaata ggagcagaag tatgccaaca gatgaagaga tttaacgatg
     6961 agctagatgg taaggtccgc tcggagcaat tgaaaaactg gtttggagct acaggtgagc
     7021 ggatttacat ggagctaaat ttctactgtg actacggtag caatattcat gttggtgagg
     7081 atttttacgc aaattttaac tgtacgatgt tggatgtttg tcccattacc atcgggaaaa
     7141 atgccatgat tggtcccaat gtacagttgc taactccact tcatccacta gatcctgatg
     7201 aacgaaattc tggtttggaa tatggctctc caattaccat tggtgataat ttctgggctg
     7261 gtggtggtgc gacaatctta cctggcgtga ccttaggcaa caatgtggtt gttggtgctg
     7321 gatctgtcgt gactaagtct tttggtgata atgttgtttt agcgggcaat cctgcgtgtg
     7381 ttatcaaaga aatacctaaa aaataattct tcttcgggag aattttttct ttgctttgcg
     7441 aatagactag atgaggtgaa gaaaatgaat aattttgaat tgtttaaatg gaaaaaagcg
     7501 ggtttgacca atcttaatgt gaataaagtt ttggcctatc aagaaaaaca cggaaaaaaa
     7561 ttgaccttgc gaaatgtcgc tatagtgtct gaatgtaaaa atccagtgct atttatggaa
     7621 aattataaga atctagatac aaaagcctgt cgcgaggaat ttaataagta tccatcattt
     7681 tcaattttag atgacatcta tcctttggcg ctcaaacaga tttacaatcc gcctgtactt
     7741 ttgttttatc aaggggattt agaattgcta gaaaaatcaa agcttgcagt cgttggtaca
     7801 cgaaatgcca gcaaaaatgg tattcagtct gttcagaaga ttatcaaaga actcaacaat
     7861 cgctttgtca ttgtcagtgg tttggcaaga ggaattgata cagctgctca tattgctagc
     7921 ctgaaaaatg gtggacaaac cattgctgta attggaacag gtttagataa tatttatcca
     7981 aaagaaaata aagatttgca gacctatatc ggaaaacacc atttggtgct gacagagtat
     8041 gaagctggtg ctcagccact caaataccat tttccagaac gaaatcgcat cattgctggg
     8101 ttggtagaag gattggtagt ctgtgaggct aaaatgcggt ctggtagctt gattacctgc
     8161 gaacgtgcct tggaagaagg aagagaagtc tatgctattc caggttccat tatggacgga
     8221 aaatcagatg gttgtcatca tctgattcaa gagggagcaa agtgcgttac atcaggcttg
     8281 gacatcattt ctgagtatca attttaaaac aagtcttcct ataggaaaat aaatatcttg
     8341 acactgactg aaaaatagta tattctttgt gaggttaaaa atatttgtaa ggtataagaa
     8401 tggctacaaa aacagttagt aagaaaaaaa caacaaccaa taaaaatctc gttattgtag
     8461 agtcgcctgc taaggcaaaa acaatcgaaa aatatcttgg taaaaattat aaggtcgttg
     8521 cttcagtcgg gcatattcga gatttgaaga aatctagtat gtctattgac tttgataaca
     8581 actatgcacc tgagtacatc aacatacgtg gaaaagggcc actcatcaat tctttgaaaa
     8641 aagaagcaaa aaatgctaag caagtctttc tcgcgagtga cccggaccgc gaaggagaag
     8701 caatttcttg gcatctggct cacattttgg gattggacgc aaacgataaa aaccgtgttg
     8761 tctttaatga aattacaaaa gatgcagtaa aaaatgcctt tcaggagcca cgtactatta
     8821 acctagactt ggtagatgcc cagcaagctc gtcgcgtctt agaccgtatt gtagggtact
     8881 ccatatcacc tattttatgg aagaaagtca aaaaaggtct gtcagcagga cgtgttcaat
     8941 cggttgctct caaattaata atcgaccgtg aaaatgaaat cagcaatttc aaaccagaag
     9001 aatattggac aattgatgca accttcaaaa aggggagcaa gaaattccag gcttcattct
     9061 acggtataga tggaaagaaa actaaaattg aaaacaatga gcaggttaaa gaaattctcg
     9121 cccgacttga tggggatgat ttcttagtag aacaggttga gcgtaaggaa cgcaaacgaa
     9181 atgcacctct gccttacaca acttctacta tgcagatgga tgcggctaat aaaattaatt
     9241 tccgtactcg taaaaccatg atggttgccc aacaacttta tgagggtgtc agtcttggca
     9301 caggtggtac ccaaggtttg attacctata tgcgtacgga ttcaacacgt attagccctg
     9361 ttgcacaagc acaagctgct gactttatta cggagcgttt tggtgctacc tattcaaagc
     9421 atggtaataa agtaaaaaat gccagtggtg cacaagatgc ccacgaagct attcgtccct
     9481 caaatgttaa cttaacacct gaatcaattg caaaatatct ggacaaggac cagttgcgac
     9541 tatatacact gatttggaat cgttttgtcg caagtcagat ggctgcagca gtttttgata
     9601 ccatgagtgt tcgtttgggt caaaatggta ttgtctttgc tgctaatggt agccaagtaa
     9661 aattcgatgg ttatatggct gtctataacg acgctgataa aaataaaatg ttgccagata
     9721 tggaacaagg tgacacggtg gtgcgcgcgt caacaaatcc agaacaacac tttactcagc
     9781 caccagctcg ctactctgaa gcaaccttaa ttaaaacatt agaagagaat ggtgtaggtc
     9841 gcccgtcaac ctatgcacca acgattgaaa ccattcaaaa acgttactat gttaagcttg
     9901 ctgcgaaacg atttgaaccg actgaactcg gagaaatcgt taataagctg attgttgaat
     9961 tcttcccaga tattgtcaat gtcaaattta cagccgatat ggaacaaaaa ttggatgatg
    10021 tagaaatcgg gaaagagcag tggcagaagg tcattgacgg tttctatcag ccattcaagg
    10081 tagaattatc taaggcagaa gaacagatgg aaaaaatcca aattaaggat gaaccagctg
    10141 gctttgactg tgatgtttgt ggacatgaaa tggttattaa attaggacgt tttgggaaat
    10201 tctatgcatg tagcaatttc ccagactgtc gcaataccaa gcaaatcact aaagaaatcg
    10261 gtgtgacttg tccggtttgc caaaaagggc aagtgattga acgcaagagt aaacgcaatc
    10321 gtcttttcta tggttgtgat cgctacccag agtgtgaatt tacttcttgg gacaagccag
    10381 tcggacgttc ttgtccgaaa tgcgaccact atctcgttga gaaaaaagtt cgtggtggag
    10441 ggaaacaagt tgtctgtcca aatggtgact acgaagaaga caagattaaa taagattaaa
    10501 ctgctattct caagggaatg gcagttgttt tttatagtca tgttagttta tcttagctta
    10561 cttcgacaag cgaggaaact tcgtttcctt attttcaact ttaaatgagg ctggtcaaaa
    10621 agtccaaagt cacttctcag tgcagtggtt gattgggttt aacaggccag tggagtgaaa
    10681 ctgttcagtg aactgtttca gcctgagctt agaaatgaaa aaatcgaggt aaaaaggttg
    10741 gagataagat ttgcgaagca aatcacagca attcgtgttt cacattccaa gtctgacctc
    10801 tacaactaaa acgaactaaa cggcaatacc agtttgaaaa attgtttaaa aaattaaaaa
    10861 aataggagaa aagtcttgca ttattgaaaa tactgtgtta tgataattga ggtttgaaaa
    10921 aactgaccta agacagtagg ggagctggac tcataaacat cctaccgagg cacaaaacga
    10981 ttattgagat aaacgtattt gtactttcgt gtctaggttt aggtgcgatt tttttgtgcc
    11041 tagcccaaaa taaaaacgga ggtaaaaaaa tgagtgaagc tattatcgct aaaaaagcgg
    11101 aattagtaaa tgccgttgct gagcaaatga aagctgcaac atctatcgtt gttgtagacg
    11161 ctcgtggttt gacagtagaa caagatacag ttcttcgtcg taacttgcgt ggtgcagaag
    11221 ttgagtacaa agttatcaaa aactcaatct tgcgtcgtgc tgctgagcaa gctggtcttg
    11281 aaggtcttgc agaattgttt gtaggtccat ctgcagttgc attctcaaac gatgcagttg
    11341 ctccagctaa aacaatttac gatttcgcga aaactgctga tgctcttgaa atcaaaggtg
    11401 gagctgtaga aggtaaagtt tcttctaaag aagaaatcga agcacttgct acattgccaa
    11461 accgcgaagg catgctttct atgttgcttt ctgtacttca agcgccagtt cgcaacgttg
    11521 catacgctgt caaagctgtt gcagaaaaag aagacgcagc ttaatgcgtc agagcgtagc
    11581 tgcttagtgc tacaaactat ttaaaaacct aaattggagg aaaatcacaa tggcattgaa
    11641 cattgaaaac attattgctg aaattaaaga agctactatc cttgagctta acgaccttgt
    11701 taaagctatc gaagaagaat ttggtgtaac tgcggctgct cctgtagctg ttgctgcagc
    11761 tggtggtgct gctgaagaag ctaaagattc attcgacgtt gaattgacat ctgctggcga
    11821 caaaaaagtt ggcgttatca aagttgtacg tgaaatcact ggtcttggtc ttaaagaagc
    11881 taaagagctt gttgacggtg caccagctat ggttaaagaa ggcgttgcaa ctgcagaagc
    11941 tgaagaaatc aaagctaaat tggaagaagc aggcgcttca gttactctta aataagaagc
    12001 acatagcaat ttgagagcgg aagcccgatt taccagtctt ttagagctta tagcgattta
    12061 aagaaactga taatttgatt tggtttcctg ccaaaaatcc tgccaaaaaa tctttggcag
    12121 gatttttgtt tttatataaa tatactgtgc agaattgcta ttcttcaaca tttgtatttg
    12181 tagaaatata tttttatgtg agcgagaaca tttcaataag tgttctcgct ttttttattt
    12241 tcaggaggaa aatcatgcaa aagaatgaac agtcatcacg acaaattgtg atgtgtcatc
    12301 tcatggctat catgggaatc gatattgaga aagcgacatg gatagttggt gagatggaag
    12361 agtctggctt aatccagttt gatgacatgg ggaatgttgg tctgttagtg ctggagggac
    12421 aatcatgaaa cgtatcaccg caaatcacta tcaaacgtca gagcgttatt ataagctccc
    12481 taaactctta tttgagagcg aacgctacaa ggatttgaaa ctagaagtta aggttgctta
    12541 tgctgttcta aaagaccgtt tggaattgtc attaagtaga gggtggatag atgaagatgg
    12601 agctatttat ttggtctatt ccaactccaa actcatggca ctacttggct gttccaagtc
    12661 aaaattattg acgattaaga aaaccttacg agagtatggt ttgatagatg aagtccaaca
    12721 atcttccagt gaaaaaggac gcttggccaa taagatttac ttgggggagt tggaacatga
    12781 acctatccca gtctcaaatt cagacggggg tggtgttcaa aaaacactag gggggtatca
    12841 aaatcagccg gggccagtct taacttcagc cactagtgag actgaagtta gtgagactga
    12901 taggagtgaa actaaagaga gtgagtcagt cattgaggac gaggaggaga aagaaagtct
    12961 aacaagtaaa aaatgtgaca atgacaattt tcaacgtaaa gtagaccgag ttacaagata
    13021 cgacagagat tacatttggg gcttggtaca tgatcagttg agacaagtcg gtctatcaca
    13081 ggctgctagt gattatgtca tgatttattt tgatcatcgg tatcagtacg ctttagagaa
    13141 tatgaggttt gcggacagag cagaaacgat agcggaatac gtctttaatg gcgtcctatc
    13201 cgaatggacc aaggtccaac gcttaaaaga actaaaaggg ggtgagtaag atgttttggt
    13261 ggatattatt aggtatttgg ggattaggaa tgatttggtt catttttgaa cttatcactg
    13321 ccccagaaat ggaagatcat tgttaagcaa ggacgttacg aaagaagtaa ggtccttttt
    13381 aattttgtca gaaaggaatg agagacatga agtttttaga tttatttgca ggaattggag
    13441 gctttcgact ggggttaact cgtcagggcc atgagtgtat tggcttttgt gagattgaca
    13501 agtttgcgag gaaatcttac aaggccatct atgagaccaa aggagaaata gaatttcatg
    13561 atattagaca agtcacagat caggacttta gacaacttag agggcaagtg gacatcatct
    13621 gtgggggatt cccttgccag gcattttcac tcgcaggcag acgattggga tttgaggata
    13681 ctaggggaac tttgttcttc gagattgctc gagcggccaa acagatccaa ccacgttttt
    13741 tattcctcga aaatgtcaag ggcttactca gtcacgacaa gggagagaca tttcgaacaa
    13801 tcctcgccac attggatgag ttggggtatg atgctgaatg gcaggtgctt aacagtaaag
    13861 atttccaagt gccgcaaaac cgtgaaagaa tttttattat cggatattct agaagatacc
    13921 gtccccgatt cctatttcct ctcagaggag aaaacagctc agctagtctt gaacgattag
    13981 gtaatgttaa tccgtcaggc aaagggatga atggagaagt ctatttatca cgtgggttag
    14041 caccaacctt aacaagagga aaaggtgaag gaactaaaat tgccattcca attttaaccc
    14101 ctgataggct agaaaaacgc caacatggga gacgctttaa agggaacgat gatccaatgt
    14161 ttactttaac tagccaagat cgacatggtg tagttgtcgc aggaacctta ccaacaacgt
    14221 ttgtgcagac gggacgagtt tatgaccttt cagggctttc tccaacgttg accacgatgc
    14281 aaggagggga taaagttcct aagattctct gccgtgaaga agcgccgcat ttgaaaatta
    14341 gggaggcgac caaattaggc tatgccaagg caatagtggg agattctgtc aaccttgctt
    14401 acccagagtc taccaaacgt agaggtcgag tgggaaaggg gatttcaaat accttaacca
    14461 cttctgacaa tatgggagtg gtagttgctg ctttggaata ccgtaaggac aagtggtatg
    14521 aagtgactgg aataattcta gatggaaaac tgtatcggtt gagaatcaga cgcctaacac
    14581 ctagagagtg ttttagactt caggggtttc ctgattgggc ttatgacaga gctgagaggg
    14641 tatccagtaa aagtcagttg tataaacaag caggcaatag cgtgaccgtc actgttatcg
    14701 aggccattgc tagagaattt agaaagattg aagaggaaga aaaacatgaa attattacat
    14761 aataaaagta ttaggaactg cacggagcta gaagaagcca tacatcaagc agaagtggag
    14821 agattttcgg aaatgattgc ttctttaccc aattatgatt gtgacattga tgtcactttt
    14881 gaagatgact accacaaaga aatgaattat ccattagctt atgagtccaa cttacaccgt
    14941 atttttgagt ttattgaaac acaagacatc aaaaatggtg tggatactta tctaacggat
    15001 gagaacaatc tcgcctttag ggcatatggg caaggctatt cttggaatga taagaatgat
    15061 gtcgtcacca cattaataac agtgaagtac tttggtgaag gcaggtcgcc tattgatatg
    15121 agtaaggtgt ttaccccact aactcaagca ttagagaagg agctatctgt gtaggaggaa
    15181 acgatgttag aaatctattt aagtcgaaac accagtcgga atcaaaaact cctgtctttt
    15241 tgtgactcgc atggtatttc ctactcctgt aaagaagtga gtcatctatc acgtgaggaa
    15301 ttactgaggt tgtttaccaa aagcagtgat tgttttacgc tcttatcccc ctcgttacaa
    15361 cgatttaaag gtcatagaga gatgaaattg agtgagttag tgacggtggt tctacggaaa
    15421 cctgaccaga atcttcgtct cccaattgtg gtttgtgagg acaaagtgta tcccgatatg
    15481 agtttagaag aagcaaggac ctttcttccg agaagtcaaa aagtggtttc ctttcgtgaa
    15541 catcttttta aggatctggt gacataagga ggagttatga acgatcgttt ttgggaaaat
    15601 ttggaaatta tcgttatgga aaaaggactg tcatgggctg accttgctcg acagatgttt
    15661 aagggccaat acgtctaccc tagtgagttt aaccgtctct accaaacctt tcgtcactac
    15721 aaatctcatc gtctcatgcc acaaggcaaa tgggtggaga aaatagtgac tgtcttagag
    15781 attgactatg aagacttgtt taggagatag tgatgaaacg actattagtg atgtacggag
    15841 ccattcatgt caatgtactc ctagtgagtt tgtacctggt tggttggcta aatggggcat
    15901 ggttacctgt tttacaagtg acatttttag ccctgctatt gtggggttgg aaaaggttta
    15961 agataccgaa aagaaaccta tccttgaagg agagagggct ttggttactt ggtagtctag
    16021 gtgtcatggt aagtattgtt tttctcctta atgccagtgt tgtggaagaa gtcttttata
    16081 gagaggtgtt gtggggagtc ttgcctcaac cagtggttca agttttgtta acgagttccc
    16141 tttttgcttt agctcatcac ccatccagtc tattcacttg ggtactttat gggagtttag
    16201 gtctcacact tggtgtggct agagggcaaa cagactgctt gagctcaact ctcgttcacc
    16261 tgtcttggaa tggaatcgtc tttttcctat ctttattgtg ataccaaaat caagggtgct
    16321 ttcgtatcat gaaagcaccc tattgttttg ataagggaat cacacaaagg aggaaatgat
    16381 gtcatccgaa caacaggaac gccaagctat tcaatatgcg gaacgtagca ctatgtttac
    16441 ggtaaaggtt cttctcaaac tcttagagtg gtcagctaga cacgccctag cacaagactc
    16501 ggcttataaa gttggggttc aaaagttaga agaactcctt caaagtccat atgccattga
    16561 gtcgctgaat atctcaaaag acattttgga taaaccagtt gatgtcggga aattcaagga
    16621 attggtggaa tcagaaaacc ttcctattgc cattagttgg caaggagatt accttcattt
    16681 ctatgctaag gataaatcgc tcttagacaa gcacttagat gagttgcttc aaaagctcgt
    16741 ttctaatcca gaaaaactga aagggctaac tatggataaa acccttgatg aggaaatcgc
    16801 acaagccaag gaacagattg tgatgtcaga accctctgct gtgaaaacaa aggaggtcat
    16861 tctctaatgg tctcagggaa aaaagttttt atctttggta ttttagggct tgctcttggc
    16921 tatttctgcc atcggctagt cttgctttac gatagtctac ctaatcaacc acccttggaa
    16981 cgccttgcct atctcttagg agagggacag aatcaggtct taaatccctt gtggaatggc
    17041 aactttacag gtaaatcagt tttgggcttt tgctttggat ttgtgacgat gggcctagtc
    17101 tatctttatg tttcaactgg tcaaaaggtt taccgagaag gggcggagta tggctctgcc
    17161 cgttttggaa acagtcacga acgcaaagcc tttctcagta agaatccttt caatgacact
    17221 attttgtcac gaaacgttag gctaaccctg ttagaaaaga aagctcccca atttgaccga
    17281 aacaagaacc ttgtggtcat tggtgggtct ggtagcggga agacctttcg gtttgtcaaa
    17341 cccaatctga ttcagctcaa ctgttccaat attgtcgttg accctaagga tcacttagct
    17401 gaaaagacag ggaagctttt tttagagcat ggctatcagg tcaagatctt agatcttgta
    17461 aacatgacca actcagatgg ttttaatcct tttcgctatg tggaaacgga gaatgatttg
    17521 aaccgtatgc ttacggtcta tttcaataat accaaaggca atggcagtcg cagtgatccc
    17581 ttttgggatg aggcgtccat gaccttagtc cgtgctattt cctcttactt ggtggatttt
    17641 tacaatcctc caggcagtac caaagaagaa gcagacagtc gccgtaagcg aggccgctac
    17701 ccagcctttt cagaaattgg aaaactcatc aagctcttat ccaaaggaga aaatcaagat
    17761 aagagtgtct tagaagtgat gtttgagatc tatgccaaga catatgggac agaaaacttc
    17821 actatgcgta actgggcaga cttccaaaac tacaaggata agaccttaga ttcggtaatt
    17881 gccgtcacaa cagctaagtt cgccctcttt aatatccaat ccgtcattga tttaactaag
    17941 cgtgacactt tggacttgaa aacatgggga acgcagaaaa ccatggtcta tctcgttatt
    18001 ccagataatg acaccacctt tcgctttctc tcagcccttt ttttctccac cgtcttttcc
    18061 accttaacga gacaagctga tgtggacttt aagggacaac tgcctatcca cgtcagaagt
    18121 tacttggatg agtttgctaa tgtcggtgaa attccagact ttgcggaaca aacctcaaca
    18181 gttcgctcac ggaacatgag tctcgtaccc attcttcaaa acattgccca acttcaaggg
    18241 ctctataagg agaaggaggc ttggaaaact attctaggaa actgtgatag cttgctttat
    18301 cttggaggca atgatgaaga gaccttcaag ttcatgagtg gtctcttagg caaacaaacc
    18361 attgatgtga gaagtaccag tcggtcgtat ggccaaacag ggtctgggtc aacttcccat
    18421 caaaaaatcg caagggatct cataacccct gatgaagtcg gaaacatgaa acgtgatgag
    18481 tgcttggtga gaattgcagg ggttcctgtt tttaaggaga aaaagttctt ccccttgaaa
    18541 cacaagaact ggaaatactt agcggacaag gagtcagatg aacgttggtg gcattaccac
    18601 attgaccccc tcaaaacaga ggaagttccg tttgaaccct cagaccacaa ggttagggat
    18661 ctaagcaaag aaagcacact acactaatag aaaagaggaa tcgtatgaac caaaaattta
    18721 caggctttgt ttatggcgtg gacgccagtt ccatgtttgc tcaagccatg gtgctcttac
    18781 aaaaaggaat ggttgcgaca ggcgcctttc ttgtcgtcat gggtattata aacctgtcaa
    18841 ccaatatcaa ggatggtgga cctggtgtcc gcaatgccat tttagaaatt gtgggtggtg
    18901 taatggtagg tgccgctggt gcctttatca cccaaattac catttaggag ggctaggtat
    18961 gacatgaaca acacattacc ttcagctttt gtctttctag cctcggagaa aatttcgagc
    19021 gatagccttt ttgaaggctt taacgtggac ttggaatcga cggccaactt ggtcaaatcc
    19081 cttgcggatt ataacccaac cgtgtggtct tatatgtcag ctatcacaaa aggagtgatg
    19141 cagcccttgg gagtggctat tttagccgct gtgttagtcc ttgagttttc taagatggct
    19201 aagaaaatcg ccaactcagg tggtgccatg acctttgaag ccattgctcc tatgattgtc
    19261 tcttatatca tggtggctgt ggtcattaca aacaccactg ttattgtaga agctatctta
    19321 gctgttgctt ctcacattat tgaaggcgta gctggtgtcg tttctcatgg gggaacgact
    19381 tatgagacca tttcaggact taaagggtca ggaattattg gaaaactcat tgttggcttt
    19441 tttgccattc tgatatggtt agtgcggttg gttagtgtga tggtggtgaa tctcctcatt
    19501 accattcgct ttatccaact ttacctcatg attccatttg cgcctctaac gattccgacc
    19561 ttcctcagtg atgactggcg aagtgttggg attggctacc tgaaaaacat catggtctat
    19621 gctcttcaag gggtcttgat tttcttaatc atctcccttg ttcccctctt tgaatcagtt
    19681 gggaaattgg ctctctcaaa tggtgcagga gtgatggaga cgctagcgac tgcctttggt
    19741 ggtttagttc aggctatttt attaatcatt gccttggtgg gcagtcaacg gactgccaga
    19801 agtatcctag gcatgtaagg aggattggga aggacgttcc tcccaatctt ttttgatact
    19861 catattagat tggagtctta tgaatacacg tgtttttaag gacattacaa aagttcaaca
    19921 cagggcttgg ctgggcttta ccacacgaca agttattttt gtcttaccag ccgttgctat
    19981 taccatcctg attttagggt taaacctctt ttattggcaa tttggggatt ggtttgtcta
    20041 cggacttatc tttaccttta ccattcctct tatgcttttt ggggtctatc ggcctaatga
    20101 cttacctttt gaaacatatc ttaattatag atggcattat gaaatgacca taccagaccg
    20161 tacactaact ggacagaaag gaatacaacg tgaaaaaaac aaatcgctca atgaaaccaa
    20221 agacctcttc taagtacaag aagacacgta aaccaaaaga agaagtgcta ccaacaactg
    20281 ttaatacgct tctttaccaa ggcctttttc ctaatggtct catgcaggtt accccagatt
    20341 atttttccca gtcctttctt ttaggggatg tcaattacca aacggtggga cttgaagata
    20401 agggagcgat tatggaaacc tattcagact tgattaacag tttggatgac aagaccaatt
    20461 tccaacttac tatttttaac cagagggtca acttggataa gtttagaaag ggtgtcttgt
    20521 atcccttaca tgaggatggc tacgatacct atcgggaaga actcaatcgt atcatggaga
    20581 ataacttaga agctggagaa aataactttt cagctgttaa attcatctct tttgggaaat
    20641 cagaccaaaa tccgaaactt gcttatcgct ccctgtctca gattggggaa tacttcaaga
    20701 gtggtttttc tgaaattgat gcgaacttta ccctcctcag tggagaaagc cgtgtgaatc
    20761 acttggctga tatgttgcga ggggaaaatc atttgccctt tacttatcaa gacctggtgc
    20821 gttcaggaca aacaaccaag cactttatta ccccaaccag tttatctttc aaacataaga
    20881 attatgtaga gattgacgat agactgcttc agattgtcta tgttcgtgac tatgggatgg
    20941 agttgggaga taagttctta cgagaactca tgcagtcgga cttggaagtg atgattagtc
    21001 ttcatgccaa aggagcagcc aagtcagaag ccatgaccaa gctccgcacc aagaagactt
    21061 tgatggaatc gcaaaaaatt ggggaacaac aaaagatggc acgatctggc gtttatcttg
    21121 aaaaggttag tcaagttcta gaaagtaaca ttgatgaagc cgatgagttg attaaaacca
    21181 tgacacaaac aggcgacaag ctctttgaca ccctcttttt gattggggtc tttgcggagg
    21241 acgaagacca gttgaaacac tcccttgata ttatcaaaca agtggcaggt tctaatgacc
    21301 ttgtgattga taatctgacc tatatgcaag aagctgcctt taatagcttg ttgccttttg
    21361 ggaagaacta ccttgagggt gtgtctcggt ctcttttgac ctcaaacatt gccgttaact
    21421 ccccgtggac gtctgtagac ctacaagata agggagggaa attctatggg ataaaccaga
    21481 tttcaagtaa catcatcacc attgaccgtg ggaaactcaa taccccatca ggtcttattt
    21541 tagggacatc aggtgctggt aaagggatgg caactaagca tgaaatcatc tcaaccaagt
    21601 taaaagaagc agatactgat actgaagtca tcattgtaga tcctgaaaat gagtacagta
    21661 tcattggtca agcctttggt ggggagagca ttgatattgc gcctgactct accactttct
    21721 taaacgtttt agacttatcc gatgacaata tggatgaaga ccctattaag gtcaaatctg
    21781 agtttcttct ctcttggatt gggaaactct tagaccgaaa aatggatggt cgagaaaagt
    21841 ccctgattga ccgtgtgaca cggctcacct ataagcattt tgagacacca tctctcgtgg
    21901 aatgggtctt tgttctctcc aaacagcctg aacaagaagc caaggactta gctcttgata
    21961 tggagcttta tgtggaaggc tcactcgata ttttctcaca tcgcaccaac atcaaaaccg
    22021 atagccattt cctcatttac aatgtcaaaa aattaggaga tgaattgaag cagattgccc
    22081 tcatggtcat ctttgaccag atttggaatc gtgtggtaaa aaaccaaaaa ctggggagga
    22141 agacttggat ttactttgat gaaatgcagc ttctgttgtt ggataagtac gcttctgatt
    22201 tcttcttcaa attatggagc cgggtccgta agtatggggc cattcccaca ggcattactc
    22261 aaaacgtaga aaccttactt cttgatgcca acggcagacg tattatcgct aatagcgagt
    22321 tcatgatact tctaaaacaa gctaaaagtg acagagaaga gttggttcat cttttgggct
    22381 tatctaaaga acttgagaaa tacttggtta atccagaaaa gggagcggga ttgattaagg
    22441 caggctcaac ggttgttccc tttagaaata aaatcccact tcaaacccaa ctctttgaca
    22501 tcatgagtac cgatccagaa aagatgaggg gtgaatcatg acaagagaac aacagaacgt
    22561 caaggttgcc cgtaaaacct ttcagagtag tttaaaggct agtcgtatcc attaccgtag
    22621 ggagaagaag gggttaaaac gctcacttcc taaacgacgc tttatcatgc gccgagctga
    22681 gaaagctgaa acaagggaac aacgtcaggc tctgaagcaa acctatcagg aggaaaaaga
    22741 cctagcgaca gataccttta aggaagcgat tgcctatgtg tctcccagat ggctaaaaag
    22801 taaggaaatt aagaagtatc ggcttcctca agccagacag cgcctagtag tagctcgaaa
    22861 acacttggca gaggtcaaga aagccgaaaa agaggaggct gttacctcta aggttaccga
    22921 tcagaaaaag ccaacagaat caaaaacgtc acggtttcag tttcaaaaag aaaaacctct
    22981 tgaacgcctt caggcagaaa aagaggtgaa atcagctaag cgtgacgtga aacaactgaa
    23041 aaaagcacat cagtttaaga acccctcgac caaggtcaaa cgagggttac gctatgtcac
    23101 ttcagaatca ctggatgtag tcgctcaaga tgatgacttg gagggaatta gaaccctaaa
    23161 ggagtctgtg attaaaggaa gacgctatgg gaaatttact tatcagtcag gaaaactcct
    23221 tgtcaaaagt ggtcagacag gtcttcggtt tactaagacg aaagccgatc atagtaagga
    23281 gcggtatcag aactttaaaa aggggaaagg gttcacccga cagaagccct taaaaccaag
    23341 aagacgttac cagacctttc tcaaacaagc tagaaaacag agtgtgtcag gaataacaaa
    23401 ggttattcaa gcgattaaga atagcctgac cttcttttca tcgattgccc ttaatcctat
    23461 gacttgggtc gtgtcaggcc ttttgttttt cctgcttttg atgatgagtt ttgtgatagg
    23521 aatttcagga actactctca ttcaacagga tgagagtgaa ctgacaaaag cctatacgca
    23581 catgacgtgg gaagatgcgg aaaacacccg aaccaacccc actggcatta cctactatac
    23641 caagattgat gacgtcatgg gctttatgaa tctcaagtat caagattatg ctttagaaga
    23701 aatcatggaa gaaggggata aaacctatca agcctatttg agtcaacttt ggcaagactt
    23761 aaacggtagg gattctttaa aatccatgct tgagttaagt aaggagtctg cctataagct
    23821 ctct
//
LOCUS       DASFRC010000011        23122 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.011, whole genome shotgun sequence.
ACCESSION   DASFRC010000011 DASFRC010000000
VERSION     DASFRC010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 23122)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23122)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23122
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.011"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(107..493)
                     /locus_tag="U1087_000340"
     CDS             complement(107..493)
                     /locus_tag="U1087_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002931159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM4754856.1"
                     /translation="MKFDAVHHIAIIGSDYDKTREFYVEKLGFEQVDEHIRPEKNDIL
                     FNVKKGNIILEIFIKPDAPLRPALPNPEHTGLRHLAFQVADVEACLEEFDRLDIRHEV
                     LRTDDFDGKKMAFFFDPDGLPLEIHE"
     gene            complement(493..2862)
                     /locus_tag="U1087_000341"
     CDS             complement(493..2862)
                     /locus_tag="U1087_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HEM4754857.1"
                     /translation="MRKTSKKGKATRRPTKAELAQQERVKNITLRVLGLLFIAFAASR
                     LGVFGVTSYNIFRLLFGSLAYLLLAGAFIYLLIPKVLREREGTISGFWLIVIGLLIEF
                     QAYLDWTYQGSDLFGHTLKLALSDLAKFQVTAFLGGGMIGSIFYLPVSFLFANVGSFF
                     IGLLVIAFGIFFVSPWSVYDVADGLAVAKDKLVETQVKRAELRTQKKAEREEKRQQEL
                     ARLEEERLRLEEEEESARALALVDRHVDLETGEILEEEPVQVPIISEYDHLDIEDEFP
                     IMLAEDDQPAQSNSASQDSEPNEFEKDETDVQIDFKPKQRLAYKLPSIDLFAPIKAKS
                     QSNEKRIVRQNIKVLEDTFASFGIKVVVECAEIGPSVTKYEVKPAVGVRVNRISNLAD
                     DLALALAAKDVRIEAPIPGKSLVGIEVPNSEVATVPFRELWEQSKTDPDKLLEIPLGK
                     AVNGSVRSFNLARMPHLLVAGSTGSGKSVAVNGIISSILMKAGPDQVKFMMIDPKMVE
                     LSVYNDIPHLLIPVVTNPRKAARALQKVVDEMEKRYELFSQIGVRNLEGYNAKVEEFN
                     SRSEEKQIPLPLIVVIVDELADLMMVASKEVEDAIIRLGQKARAAGIHMILATQRPSV
                     DVISGLIKANVPSRIAFAVSSGTDSRTILDENGAEKLLGRGDMLFKPIDENHPVRLQG
                     SFISDDDVEAIVGFIKDQADADYDESFDPGEVAEGDGDAGFGDAGGDPLFNEARALVV
                     ETQKASASMIQRRLSVGFNRATRLMEELEAAGVIGPAEGTKPRKVLETQ"
     gene            complement(2988..4346)
                     /locus_tag="U1087_000342"
     CDS             complement(2988..4346)
                     /locus_tag="U1087_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 32 protein"
                     /protein_id="HEM4754858.1"
                     /translation="MKTVVEANQFIQTEKGNVNPIFKPQAHLTPETGWINDPNGFIYF
                     RGEYHLFYQFNPYESVWGPMHWGHAKSKDLVNWEHLPVALAPDKDYDKDGCFSGSAIV
                     KDDVLWLMYTGHINNEDGTVSQVQNMAFSTDGIHFEKIEQNPVATADGLPEEVIANDF
                     RDPKIFEKDGHYYSVVATKHKDNVGCIVLLSSPNLTDWKFESIFLKGEVNQGFVWECP
                     DYFEVDGQEYLIISPMRYQKDGNDFININSNIFVTGHVDWDKKVFVAESFKEIDHGHD
                     FYAAQTTEGPEGERVMVAWMHTWGRKLVTNDLGHKWYGQMTLPRILKKTENGLHQVLP
                     TSVLEAFKDIEIGQSIQGPSKLSLKLDDSLDLKLGTDRDYLQFGYDKAKQEVYIDRSS
                     LKIQQVGEEEWSTVRRAVTVQATELEVLVDTNCLEIFINDGQETLTSTFYVEGQIILN
                     AL"
     gene            complement(4364..5974)
                     /locus_tag="U1087_000343"
     CDS             complement(4364..5974)
                     /locus_tag="U1087_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000669747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM4754859.1"
                     /translation="MKHTFGKTVVTLLASTVLLAACGSKNTASSPDYELKDVQFPLEK
                     SVTLKFMTASSPLAPADPNDKLIFQRLEEETGVHIEWTNYQSDFGEKRNLDIASGDLP
                     DAIHNDGASDVELMNWAKQGVIVPVEDLIDKHMPNLKKILDENPEYRSMITAPDGHIY
                     SFPWIEELGEGKESIHTVNDIAWINKEWLNKLGLEMPKTTDDLIKVLEAFKTQDPNGN
                     GKADEIPMGFINGGGNEDFKILFGAFGVGDNDDHLVVSNDGTVDFTADNEDYKEGVEF
                     MRTLQEKGLLDPEAFEQDWNTYIAKGSENLYGVYFTWDKANITGMNDTYDILPVLAGP
                     DGTKHITRTNGMGFQRDRMVITSANQNLELTAKWIDAQYAPLQSVQNNWGTYGDETQQ
                     NIFELDKATNSLKHLPLDGTAPGELRQKTEVGGPLAILDEYYGTVTTMPDDAKWRLDL
                     MHATYLDYVTNDDIYPRVFMEQEDLDKIAQVEADMNDFIYRKRAEWIVNGGIEEEWDS
                     YLKELESYGLSDWLAIKQKYYDQYKENQ"
     gene            complement(6021..6908)
                     /locus_tag="U1087_000344"
     CDS             complement(6021..6908)
                     /locus_tag="U1087_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM4754860.1"
                     /translation="MNTQMYTKFDKRMLIVNKILLAFLVLITVVPMVYILVASFMDPQ
                     ALVSKGISFDPKDWTVEGYQRVFSDKSILRGFFNSLFYSFSFAFVTVAISVMTAYPLS
                     KKDLVGKKWINAFLVFTMFFGGGLVPTYLLVKDLGMLNTVWAIIIPGAVNVWNIILAR
                     TYFQGLPDELVEAAVMDGANEFQIFWKIMIPLAKPIMFVLFLYAFVGQWNSYFDAMIY
                     IKDPDLEPLQLVLRKILIQSEPAKDMIGAQAAMNEMKRIAEMIKYATIVISSLPLIVM
                     YPFFQKYFDKGIMAGSLKG"
     gene            complement(6918..7838)
                     /locus_tag="U1087_000345"
     CDS             complement(6918..7838)
                     /locus_tag="U1087_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM4754861.1"
                     /translation="MKTSKLQQASLFDRIKQQKLLLLMLLPGLVLTFIFRYIPMYGVL
                     IAFKDYNPLKGVLGSEWIGFEEFTKFLSSPNFGTLLANTLKLSVYGLLLGFLPPIILA
                     IMLNQLLSDKAKKRIQLVLYAPNFISVVVIVGMIFLFFSVGGPVNSILGMFGIEANFL
                     TDPDFFRPLYILSGIWQGMGWASTLYTATLVNVDPALIEAAKLDGANIFQRIWHIDLP
                     ALKPVMVIQFILAAGGIMNVGYEKAFLMQTSLNLTSSEIISTYVYKIGLVSGDYSYST
                     AVGLFNALINIILLIAVNKIVKRINDGQGL"
     gene            complement(7993..8982)
                     /locus_tag="U1087_000346"
     CDS             complement(7993..8982)
                     /locus_tag="U1087_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM4754862.1"
                     /translation="MEEQKSITMKDVARVAGVSVGTVSRVINNEPGIKESTLEKVNAA
                     IQKLNYIPDVYARGMKKNKTETIALIIPTVWHPFFGEFAYHVEVELSKKNYKLLLCNI
                     SGPKRELDYLTMLQQNKVDGIIAITYSPIDDYLSSNIPFVSIDRVYENKDIACVSSDN
                     RAGAELAANTLIAKGGRHFAFIGGHNKTINETKKRRLYFEKRILEAGFPCHVLDLEEP
                     YDDFVGQVEEFLVNNPQVDAIFTINDFTALDTLAVLEKLGRRVPEDVQVIGYDGIQLA
                     SEKSLALSTIRQPLESMAQEAVACLIDIIEKRERPLQVTLPISYLEGKTTKNF"
     gene            complement(9139..9684)
                     /locus_tag="U1087_000347"
     CDS             complement(9139..9684)
                     /locus_tag="U1087_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754863.1"
                     /translation="MSLQNRVEEMYKDHEVKPYISPERDLAAWLLEAKPVPKRNMVRL
                     EEGILPGDIILLWRISLGSFETTTPYSKYFEYMYGINGPAHMEQLIADGYAYVESAFD
                     SLDHITSTAKKNILKAEGVTGLSKMKAAALDTALKDNLTEEKLAPYFTVRGYALTEKG
                     RAALDNHPEVLAKHPMKKMYK"
     gene            complement(9685..10062)
                     /locus_tag="U1087_000348"
     CDS             complement(9685..10062)
                     /locus_tag="U1087_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000625774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxalase/bleomycin resistance/extradiol
                     dioxygenase family protein"
                     /protein_id="HEM4754864.1"
                     /translation="MIQSIGQVMLYVNDIEASAQFWKEKMGFERVEKQVQGPQTSYII
                     APKSDSEVQFVLHDKAEVAEMEPELNLGTPSILMTSVDVAKTYEELVERGVTTNPVMD
                     LGFMKVISFADNDGNYYAIREVK"
     gene            complement(10147..10500)
                     /locus_tag="U1087_000349"
     CDS             complement(10147..10500)
                     /locus_tag="U1087_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2500 domain-containing protein"
                     /protein_id="HEM4754865.1"
                     /translation="MFENLFDPDGSLVWHTALFYSFSAIILAIVCFHIIKNFMEWHHN
                     NRAPKESCKAKLVSKRTHVFGNEVARTNYYVTFEWEGKRQEFRLRSDEYALLAEGDVG
                     TLHFQGTRFLGFERL"
     gene            10643..11446
                     /locus_tag="U1087_000350"
     CDS             10643..11446
                     /locus_tag="U1087_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEM4754866.1"
                     /translation="MKKILALALASSILLTACTNNSTANSSSSTASSSSPSSTTTADT
                     TASSQYAKDLAYAINNPKATFPQLSNEIGENEAAVKIKTTEGDITIKLFPEQAPLTVE
                     NFLTHAKEGYYNGTIFHRVIKDFMIQGGDPLGNGTGGESIWAGKDTTIDAGNGFKDEI
                     SAFLYNIRGSLSMANAGAGTNGSQFFINQNTTDMSSQLSSSSYPGKIIDAYKNGGNPN
                     LDGKHTVFGQVIEGMDIVDKIASVETDNSDKPKTDVKIESIEILKDYTF"
     gene            complement(11857..13401)
                     /locus_tag="U1087_000351"
     CDS             complement(11857..13401)
                     /locus_tag="U1087_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011681503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HEM4754867.1"
                     /translation="MLLQEEIKKRRTFAIISHPDAGKTTITEQLLYFGGEIREAGTVK
                     GKKTGNFAKSDWMDIEKQRGISVTSSVMQFDYAGKRVNILDTPGHEDFSEDTYRTLMA
                     VDAAVMVVDSAKGIEAQTKKLFEVVKHRNIPVFTFINKLDRDGREPLDLLQELEEVLG
                     IASYPMNWPIGMGKSFEGLYDLHNKRLELYRGDERFASLDEGDKLFGSNPFYAQVLDD
                     IELLAEAGNEFSEQAILDGDLTPVFFGSALTNFGVQTFLDTFLEFAPEPHGHKTTTGD
                     VIDPLNKDFSGFVFKIQANMDPRHRDRIAFVRVVSGEFERGMAVNLPRTGKGAKLSNV
                     TQFMAESRENVENAVAGDIIGVYDTGTYQVGDTLTVGKNKFEFEPLPTFTPEIFMKVS
                     AKNVMKQKSFHKGIEQLVQEGAIQLYKNYQTGEYMLGAVGQLQFEVFKHRMEGEYNAE
                     VVMTPMGKKTVRWIKPEDLDERMSSSRNILAKDRFDQPVFLFENDFALRWFADKYPDV
                     ELEEKM"
     gene            13638..15974
                     /locus_tag="U1087_000352"
     CDS             13638..15974
                     /locus_tag="U1087_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HEM4754868.1"
                     /translation="MNKQIKGLSTKEVQERIQNQQTNHFKTKTCASNWEIFRRNVFTS
                     FNALNFAIFLALLAVQAWSNLFFFGVIVLNAVSGMLTEWRARRMIDKLNLMNKDFIRV
                     VRDSETISIAPEDIVLDDVLLLSAGEQVPSDAIVLEGIAEANEAMLTGESDLIVKNTG
                     AELLSGSYLVSGQIYAKVIHVGAENYANKLMLEAKTHKPIVSRILYNMDKIAKFTGKI
                     IIPFGLALFLEAFFIKLLPLKDSVITSSTALLGMLPKGIALLTITSLLTAVIKLGMKN
                     VLVQEMYSVETLARVDVLCLDKTGTITQGKMTVENLLPLTNHYSLDTIQQILATYIQT
                     SEDTNSTAQAIRKEYGDLEHHYKASHIIPFSSDRKWGAMTIENIGHIFLGAPEMLLTQ
                     NPPSVSEAQARGSRVLILALSQQSLPSSQNQLPENIEPLALLEIADPIREDATETLAY
                     LRSQEVTLKIISGDNPVTVSHIAREAGFADYDSYIDCSKVDDEELIARAETTAIFGRV
                     SPHQKKLLIQTLKAQGHTTAMTGDGVNDILALREADCSIVMAEGDPATRQIANLVLLD
                     SEFRDIPEILFEGRRVVNNISHIAPIFLIKTIYSFLLGLICIASIALGKAEYLLVFPF
                     IQVQMTLIGQFVEGFPPFILTFERNIRPVEKHFLRKSLLLALPNALMVVLSVLIFHLM
                     QVFGYLNLHDMQTLSYYVLGSTGLLAVIRACLPLTKARLALIIYSVFGFFISSHFLHG
                     LIEIHPLNSHTLPIYSGLMLIIIPVFFWISYKQGAFKN"
     gene            complement(16005..16703)
                     /locus_tag="U1087_000353"
     CDS             complement(16005..16703)
                     /locus_tag="U1087_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02206 family membrane protein"
                     /protein_id="HEM4754869.1"
                     /translation="MSDFFSNQISEAPNLNVLEHLFLMIIWFFMLHLCFRCYQKRWFH
                     IVFWWLQFIQIVSLYTWYIVADSPLSESLPFYHCRLAMLFILWAKPGPLKRYFAYLGL
                     FGSLAAFIHPVFDPFAFPHLTFFTFVIGHYALTVNCMLYLLSDLEGEMLKGKEVVKYT
                     LIMNMLILGVALLTGGNYGFLRQAPLVNTNNLPLNFFLVTCLLCFSILSIQAMLIAYL
                     KKESKQMNSHILKK"
     gene            complement(16794..18155)
                     /locus_tag="U1087_000354"
     CDS             complement(16794..18155)
                     /locus_tag="U1087_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HEM4754870.1"
                     /translation="MKLTLHEVAQVLGAKNDISLYPDRALNKVEFDSRLITEGDLFVP
                     LKGARDGHDFIPVAFENGCAVTLSEVSLDVPHILVDDCLAALQQLAAYYLEKTGVEVI
                     AVTGSNGKTTTKDMIHDVLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQ
                     DHLGDIHLLSEIAKPSLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEPGSKLLIPA
                     DPIADKLLPSHVDLIRFGEQADLQVTSLVESKDSLTFTVNFMDGDIFLPVTGKYNATN
                     AMVASYVGKTLGVPDKAIKSALAGLNLTRNRTEWKKAANGADILSDVYNANPTAMRLI
                     LETFSSIPANEGGKKIAVLADMKELGSQSVDLHNQMILSLSPDVLDTIIFYGQDIEGL
                     AQLASQMFPIGKVYFFRKNAEQDQFEDLVKQVRESLGKEDQILFKGSNSMNLGKVVEA
                     VEK"
     gene            complement(18284..18664)
                     /locus_tag="U1087_000355"
     CDS             complement(18284..18664)
                     /locus_tag="U1087_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEM4754871.1"
                     /translation="MYQTTVKGEGLFQALSQGYGEPVRTFGVTEKGETPVSLVNIGLA
                     ACITMCVQGYYASQEGNKTMPVQVESRLDNQRFEVLIGIGESVSAQKQKEILAYVEKK
                     CKVKALLREDLQFETSFYVLESVE"
     gene            complement(18752..19798)
                     /locus_tag="U1087_000356"
     CDS             complement(18752..19798)
                     /locus_tag="U1087_000356"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HEM4754872.1"
                     /translation="MSKETLILLYGGRSAEREVSVLSAESIMRAINYDKFFVKTYFIS
                     QTGDFIKTQEFSQTPSADEKLMTNATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGS
                     IQGFLEVLRLPYVGTNILSSSVAMDKITTKRILESAGISQVPYVAVIEGENIDEKIAE
                     IEGKLTYPVFVKPANMGSSVGISKAEDLAGLRKALDLAFKYDSRVLVEQGVNAREIEV
                     GILGNADVKTTLPGEVVKDVAFYDYDAKYIDNKITMEIPAKIDESIMDIMRDNAANAF
                     RAIGGCGLSRCDFFLTEDGDIFLNELNTMPGFTQWSMYPLLWDNMGLAYPDLIEELVG
                     LAKEMFEKRESHLI"
     gene            complement(19903..20499)
                     /gene="recR"
                     /locus_tag="U1087_000357"
     CDS             complement(19903..20499)
                     /gene="recR"
                     /locus_tag="U1087_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002896112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HEM4754873.1"
                     /translation="MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFA
                     KNLLAAKRDLSYCSICGNLTDQDPCAICQDSTRDQSTILIVEDSRDVTALENIQEYHG
                     LYHVLHGLISPMNGIGPDDINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
                     KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL"
     gene            complement(20508..22583)
                     /locus_tag="U1087_000358"
     CDS             complement(20508..22583)
                     /locus_tag="U1087_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEM4754874.1"
                     /translation="MKKRKNKPLEHDGNFISLRLNILFSIVIFLFLVLILRLADMQII
                     NHDFYSNKLSTASQKIISNGSIRGQIYDAQGKPLVENEIQQVVSFTRPNKMSAQEMKE
                     VANKLLQWVNVSDVTITQRDKADYYLADEEVYRQVVEALPKDKKYDSDGNYLSESTIY
                     SNAVDSIPAEALQYSEQDNKAIELFKQMNGATYFSTVNLVTDTLTSEQVAHIVANESQ
                     LPGISTTNNWQRTILPTSLSSIIGTVTSEQAGLPAEDAEYYLSKGYSSNDRVGTAYLE
                     KQYEEVLQGQREKKQINLDRNGNIESIETIQEGQQGNNIKLTIDLAFQDGVNAILRKY
                     FESELATGSALYSEGVYAVALNPSTGAVLAMSGYSHEKGSSTITEDALGTITSVFTPG
                     SIVKGATISSGWENGVISGNQVQLDEPIYFAGSAPITSWYGAYVSFNIDATEALEYSS
                     NAYMVKIALGLLGQTYSANMYLNDGDTLTNAMTKLRSTFAEYGLGASTGIDLPLESTG
                     FLPEEYSTANFITNAFGQFDNYTPMQMAQYAATIANNGTRISPHLVEGIYGNNAQGGL
                     GELIETVSGKEMNQVNISAEDMSLLRQGFYQVVNGGGRFNTGSAIGRGAAVTISAKTG
                     TAETYTTTASGDVVTAINTNVVAYAPSDNPQIAVAVVLPNLTNQSSTTTKIITQEIIN
                     LYQSLHPMN"
     gene            complement(22675..>23122)
                     /locus_tag="U1087_000359"
     CDS             complement(22675..>23122)
                     /locus_tag="U1087_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM4754875.1"
                     /translation="TSRVLSCSQAVEPSSWSKGWFAQDLINLDEEKAAFENVSCTSLQ
                     DRMTILNLLGMLGLSYDKAQQKVANLSGGERVRLSLAKVLLADANLLILDEPTNFLDM
                     AAIEALETFLKEYEGSVLLVSHDQQFVETSVHSQWEIVQACLVKKS"
BASE COUNT         6625 a         5208 c         4510 g         6779 t
ORIGIN      
        1 agaactgacc ttcatcaaat caagtcaaca gcgtatgatt ttgattttct aagagtatta
       61 attagttgtc atattgatag gcctctctgg gcatgaaaag atggacttat tcatgaattt
      121 ctagagggag gccatctgga tcaaagaaga aggccatttt tttaccatca aaatcatctg
      181 ttcgcaggac ttcatgtcgg atgtccaaac ggtcaaattc ttccagacag gcttccacat
      241 ctgcaacctg gaaggctaga tggcgtaggc ctgtatgttc aggattgggc agggcaggac
      301 gaagtggagc atccggtttg atgaaaattt ctaaaattat atttcctttt ttgacattga
      361 aaagaatgtc atttttttct ggtcggatat gttcatccac ctgttcaaag cctagtttct
      421 caacataaaa ttctcttgtc ttgtcatagt cactaccgat aattgcaata tgatgaactg
      481 catcaaattt cattattgtg tttccaatac ctttctaggt tttgttcctt cagctggacc
      541 aatgacaccc gctgcttcta gctcttccat gaggcgtgtt gccctgttaa aaccaacaga
      601 caagcgtcgt tgaatcatag aggcgctggc tttttgtgtc tcaactacca aggcacgtgc
      661 ttcgttgaaa agtggatctc ctccagcatc accaaaacct gcatcgccat caccttctgc
      721 cacttcacct ggatcaaagg attcatcata atctgcatct gcttgatcct tgataaagcc
      781 aactattgct tctacatcat catcggatat aaaagaacct tgcaagcgga ctggatggtt
      841 ttcatcaatc ggtttaaaga gcatgtcacc gcgacccaag agtttttcag caccgttttc
      901 atctagaatc gtccgactgt ctgtaccgct tgatacggca aaagcgatac gagatggtac
      961 attggcttta atcaaacctg aaataacatc aacagatggt cgctgggtag caagaatcat
     1021 gtggatacct gctgcacgag ccttctgtcc caagcgaata atggcatctt ccacttcctt
     1081 gctggctacc atcatcaagt ctgccaactc atctacgatt accacaatga gaggaagtgg
     1141 aatctgtttt tcttctgaac ggctattaaa ttcttcgacc ttcgcattat aaccttccaa
     1201 gtttcggaca ccgatctggc taaacaactc atagcgtttc tccatttcat ccactacttt
     1261 ttgaagagct cgagcagcct tgcgtgggtt ggtcacaacg ggaatcaata ggtggggaat
     1321 atcattatag accgataatt cgaccatttt ggggtcaatc atcatgaact taacttggtc
     1381 tggaccagct ttcatgagaa ttgaagagat gataccgttg acagcaacag acttccctga
     1441 accagttgaa ccagccacca ataaatgggg catacgtgct aggttaaagg aacggacgga
     1501 gccattgaca gccttaccga gaggaatttc cagaagcttg tctgggtctg ttttagattg
     1561 ttcccagagc tcacggaaag gtactgtagc cacttcggag tttggaactt caataccgac
     1621 cagtgatttt cctgggatag gagcttcaat acggacatct ttagccgcaa gggctagagc
     1681 caaatcatca gccaggttag aaatccgatt gacacgaacg ccgactgctg gtttgacttc
     1741 atacttggtt accgatggtc caatctcagc acactcaact actaccttga ttccaaaact
     1801 ggcaaaggtg tcttctaaaa ctttaatatt ctgacgaaca attcgttttt cattggactg
     1861 actcttagct ttaataggag caaataagtc tatggacgga agtttatatg ctagtctctg
     1921 cttaggcttg aaatcaatct gcacatctgt ctcgtccttc tcaaactcat ttggttcaga
     1981 atcctggctt gccgagtttg attgtgctgg ttggtcatct tctgccaaca taattggaaa
     2041 ttcatcttct atgtctaagt ggtcatattc tgaaataatc ggtacttgaa caggctcttc
     2101 ttcgaggatt tcacccgttt ctaaatcgac atgtctatct accagtgcca aagcccgagc
     2161 tgactcttcc tcttcctcta gacgaaggcg ttcctcttct agacgagcta attcttgctg
     2221 acgtttttct tctcgttctg cttttttctg tgttcgaagc tctgctcttt ttacctgcgt
     2281 ctccaccaac ttatctttgg caaccgccaa gccatcggca acatcataaa cagaccatgg
     2341 gcttacaaaa aagataccaa atgctatcac tagaagaccg atgaagaagg aaccgacatt
     2401 tgcaaagagg aaggagactg gcagatagaa gatacttcca atcatccctc cgcctagaaa
     2461 tgctgttacc tgaaacttag ctaggtctga caaggccaat tttagagtat gaccgaataa
     2521 gtcactccct tgataggtcc agtctaagta agcctgaaat tcaatcaata acccaataac
     2581 aatcagccag aagcccgata tggtcccttc tctttcgcgt aagactttgg gaatgagaag
     2641 gtagataaat gcacccgcca ataatagata ggccagacta ccaaataata gccggaaaat
     2701 attgtagctg gtcactccaa acacacctag gcgactggct gcaaaggcaa tgaataaaag
     2761 ccccaatact cgaagggtga tatttttaac acgttcttgc tgtgctaatt ctgccttggt
     2821 tggtcgcctc gtagcctttc cttttttact tgtctttctc atagatacct caactttctc
     2881 aatctcttta ttctatcata attgggaaga attttcatga tagaaaaaac cctgaaaata
     2941 cagggtttct cttggagtga aagaataatt taagagggca aataatatta tagagcgttt
     3001 agaataatct gaccttctac gtagaaggtt gatgtcaagg tttcttgacc atcgttaata
     3061 aagatttcca aacagttggt gtcaaccaag acctctagct ctgtcgcttg aaccgtgacc
     3121 gctcgacgaa cagttgacca ttcctcctca ccaacttgct ggattttgag agagctacgg
     3181 tcaatataga cttcttgttt ggctttatca tagccaaatt gaagatagtc tcgatcagtc
     3241 cccagtttca agtctagact gtcgtccagt ttgagggaaa gcttacttgg tccttggata
     3301 ctttgtccaa tttcaatatc cttgaaggct tccaagacac ttgttggcag aacttggtgc
     3361 aatccgtttt cagtcttctt gagaatgcgt ggaagagtca tctgaccgta ccacttatgg
     3421 cctaggtcat tggtcaccaa cttgcgtccc caggtgtgca tccaggctac catgacacgt
     3481 tccccttctg gaccttcggt agtctgggca gcatagaaat catgaccatg gtcaatttct
     3541 ttgaaggatt ctgccacaaa gaccttctta tcccagtcca catgacctgt cacaaagatg
     3601 ttggagttga tattgataaa gtcattcccg tctttttggt aacgcattgg agagataatc
     3661 aggtactctt gaccgtccac ttcaaagtag tcaggacatt cccagacaaa gccttggttg
     3721 acctcacctt tcaagaagat agactcaaat ttccaatccg tcaggttggg agagctgagt
     3781 aagacgatac agccgacatt atccttgtgc ttggttgcga caacagagta gtagtgacca
     3841 tctttctcaa aaatcttcgg atcgcggaag tcattggcaa tcacttcttc tggcagtcca
     3901 tctgcggttg cgactggatt ctgctcgatt ttttcaaagt gaataccgtc agttgagaag
     3961 gccatgttct gaacttggct aactgtcccg tcttcattgt tgatatgacc ggtatacatg
     4021 agccatagaa catcatcttt gacaatggca gagcccgaga aacagccgtc cttatcgtag
     4081 tccttgtctg gagcaagggc aactggaagg tgttcccagt tgaccaagtc cttacttttc
     4141 gcatgacccc agtgcatcgg tccccaaaca ctttcgtaag ggttgaattg gtagaacaaa
     4201 tggtattctc cacggaagta gataaatcca ttggggtcgt ttatccagcc tgtttctggt
     4261 gttaaatggg cttgcggttt gaaaatcgga ttgacgtttc ctttttctgt ctgaataaat
     4321 tgattggctt ctactactgt tttcacaggc agcctccttt tgattactga ttttctttat
     4381 actgatcgta gtatttttgc ttgatagcta accagtcaga aagaccatag ctttccaact
     4441 ctttcaagta gctatcccac tcttcttcga taccaccgtt tacaatccat tctgcacgtt
     4501 tacggtagat gaagtcgttc atatctgctt caacttgggc aatcttatcc aaatcttctt
     4561 gttccatgaa gacacgaggg tagatgtcat cgtttgttac atagtcaagg taggtcgcat
     4621 gcatcaaatc caaacgccat ttagcgtcat ctggcatggt tgtcacagtt ccgtagtatt
     4681 catcaagaat agccaacggt ccaccaactt ctgtcttctg acgaagttca cccggtgcgg
     4741 taccatctaa tggcaagtgt ttcaaactat tagttgcttt gtcaagttca aagatatttt
     4801 gttgggtttc atcgccatag gtaccccagt tgttttgaac agattggagc ggagcgtatt
     4861 gggcatcaat ccatttagca gtcaattcca agttttggtt agctgaagtg atgaccatgc
     4921 ggtcgcgttg gaagcccatg ccgttagtac gagtgatgtg cttggttccg tcaggacctg
     4981 ctaagacagg taagatgtca taagtatcgt tcatacctgt aatgttagct ttatcccaag
     5041 tgaagtaaac accatataga ttttcactac ctttggcaat gtaagtattc caatcttgtt
     5101 caaaggcttc cggatctaga agaccttttt cttgaagggt acgcataaat tcaacacctt
     5161 ctttgtagtc ttcattgtcc gctgtgaagt caacagttcc gtcattgcta acaactaagt
     5221 gatcatcatt atcaccaaca ccgaatgccc caaaaagaat tttgaagtct tcatttcctc
     5281 caccattaat gaagcccatc ggaatttcat ccgccttgcc atttccgttt ggatcttggg
     5341 tcttgaaggc ttcaaggacc ttaatcaagt catccgttgt ttttggcatt tcaagaccga
     5401 gtttgttcaa ccattctttg ttgatccaag caatatcgtt aacagtgtgg atagactcct
     5461 tgccttcacc taactcttca atccatggga atgagtagat atgaccgtct ggagctgtaa
     5521 tcatggaacg gtattctgga ttttcatcca aaattttctt gaggtttggc atatgcttat
     5581 caatcaagtc ttcaactggt acgataaccc cttgttttgc ccagttcatc aattccacat
     5641 cagaagcccc gtcattatgg atggcgtctg gcaagtcacc tgaagcaatg tccaaattcc
     5701 gcttttcacc aaagtcagac tggtagttgg tccattcaat atgaacgcca gtttcttcct
     5761 caagacgttg gaaaatcaac ttatcatttg ggtctgctgg agctaggggg gagctagctg
     5821 tcataaactt aagcgtaact gatttttcaa gtgggaattg aacatctttt aattcataat
     5881 cagggcttga tgcagtattt tttgagccac aagcagccaa caacacggta cttgctagaa
     5941 gcgtaacaac tgtttttcca aatgtgtgtt tcatcagaaa caacctcctg ttttgttttc
     6001 tataaaaatt ttgaacaatt ttaacctttt aatgaaccag ccatgatacc cttatcaaag
     6061 tatttctgga agaatggata catgacaatg agtggcaagc tagagatgac aatggtcgca
     6121 tacttaatca tttctgcgat gcgtttcatt tcattcatgg cagcctgggc tccaatcatg
     6181 tccttagcag gctcgctttg aatgaggatt ttacgaagta ctagttggag tggctccaag
     6241 tctgggtcct tgatgtaaat catggcatca aagtaagaat tccattgacc tacaaaggca
     6301 tataggaaaa gtacaaacat gattggctta gctagtggaa tcatgatttt ccagaaaatc
     6361 tgaaattcat tggcaccgtc catcactgcc gcttctacca actcatctgg caagccttgg
     6421 aaataggtcc gtgccaagat aatattccaa acattgactg caccaggaat aataatggcc
     6481 caaacggtgt tcagcattcc caaatctttg accaagagat aggtcggaac aagtccgcca
     6541 ccgaagaaca tggtgaaaac gagaaaggca ttgatccatt tttttccaac caaatctttt
     6601 ttagagagcg ggtaggcagt catgactgag atagccacgg tcacgaaggc aaaggagaag
     6661 gaataaaaga gggagttgaa aaatccgcgt aggatagact tgtctgaaaa tacccgttga
     6721 taaccttcta ctgtccagtc ctttggatca aagctaattc ccttgctgac caaggcctgc
     6781 ggatccatga aggatgcgac taagatatag accataggca caactgttat gagaacaaga
     6841 aatgccagca agattttatt gacaatcagc attcgcttgt caaattttgt gtacatttgt
     6901 gtattcatac gaacctccta taagccttgt ccatcgttga tgcgtttgac aatcttattg
     6961 actgcaatca gcagaataat attgataagt gcgttaaata agccaaccgc tgttgaataa
     7021 gagtagtcac ctgacaccaa accgatttta tagacatagg ttgagatgat ttcagaactg
     7081 gttaggttga gggaggtctg catcaggaag gctttttcat agccaacgtt catgatgccc
     7141 ccagctgcta agataaactg aatgaccata actggtttta gtgcaggcaa gtcaatatgc
     7201 cagatacgtt ggaagatatt agcaccgtct agcttagccg cttcaatcaa ggctggatca
     7261 acattgacca aggtagccgt gtagagagtc gatgcccagc ccattccctg ccaaatacca
     7321 ctgaggatgt agaggggtct gaagaaatca gggtctgtca ggaagttggc ttcaatgcca
     7381 aacataccta ggatggaatt gaccggtcct cctactgaga agaagaggaa aatcataccg
     7441 acaatgacca cgactgagat aaagtttgga gcgtagagca ccaactgaat ccgtttttta
     7501 gccttatcgc tcaatagttg gttgagcatg atggccaaaa taatgggtgg gagaaatcct
     7561 aggagtaggc cgtagacact caatttcaag gtgttggcaa gtaaggtgcc gaaatttgga
     7621 gaagagagaa acttggtaaa ctcttcaaac ccaatccact cactaccaag cacccctttt
     7681 aaaggattat agtctttaaa ggcaatcaac actccgtaca taggaatgta acggaagatg
     7741 aaggtcaaga ccaagcctgg tagtaacatc agtaacaaga gtttctgttg cttgattcta
     7801 tcgaatagac tagcttgttg cagttttgat gttttcataa gaactccttt ttgaaacgtt
     7861 tcaaatttat tgattttaga aagaggatgt gaacctcttt ttgaaacgtt tcatttttct
     7921 tgtaaaaata aaaccaactg tttattgatg attttatttt atcattgtaa ccgttttctg
     7981 tcaactgctt ttttaaaaat tttttgtagt ttttccttca agataggaaa tcggtagagt
     8041 gacttgtagg gggcgctctc ttttctcaat aatatcaatt agacaggcaa cggcttcctg
     8101 ggccatagac tccaaaggtt gacgaatggt cgaaagggct aaggattttt cacttgccaa
     8161 ctgaatacca tcatagccaa tcacctgcac atcttctgga acccgtcgtc ccagtttttc
     8221 caaaacagca agtgtgtcta gggccgtaaa atcattgatg gtgaaaatag cgtcaacctg
     8281 tggattgtta accagaaact cttcgacttg accaacaaag tcatcatatg gctcttccaa
     8341 gtccaagaca tgacaaggaa aacctgcctc taaaatccgc ttttcaaaat acaatctacg
     8401 cttcttggtt tcattgattg ttttattgtg cccaccgata aaggcaaaat gacgaccacc
     8461 ttttgcaatc aaggtattcg ctgccagttc cgcaccagct cggttgtccg aactgacaca
     8521 ggctatgtcc ttgttttcat aaacacgatc gatactgaca aaggggatat tggacgatag
     8581 ataatcgtca atcgggctat aagtgatagc aataatgccg tccaccttat tttgctgcaa
     8641 catagtcaga taatccaatt ccctttttgg accagaaatg ttgcaaagga gcaacttgta
     8701 atttttctta ctcagttcca cttcaacatg ataggcaaat tctccaaaaa aaggatgcca
     8761 aactgtcgga ataatcaagg cgatggtttc ggttttgttc ttcttcatgc cacgagcata
     8821 aacatctgga atgtaattta atttctgaat ggcagcattg actttttcaa gcgtactttc
     8881 cttaatacct ggttcattgt tgataactct tgatactgtc ccaacactga cccctgcaac
     8941 tcgagctaca tctttcatag taattgattt ttgttcttcc atggtttacc cctttctttt
     9001 gaaacgtttc aataatttac actagaatat cattgatagc gttttctgtc aagggaaata
     9061 gacttgttag caaataaaaa cacccaaaaa gctagaatga ttctaacttt tgagtgccgt
     9121 ttaaaaatct tttctatttt atttgtacat cttcttcatt gggtgttttg caagcacttc
     9181 tgggtgatta tcgagtgcag ctctgccttt ttccgtcagg gcataacctc ggacagtaaa
     9241 atatggagct aacttttctt ccgtcaagtt gtccttgagg gcagtgtcaa gggcggccgc
     9301 cttcatcttg gacagaccgg tcacgccttc tgccttgagg atatttttct tggcagtcga
     9361 agtgatatgg tctagggaat caaaggccga ttccacatag gcataaccgt ctgcgatcaa
     9421 ctgctccatg tgagcaggac cattgatgcc atacatatac tcgaaatatt ttgagtaggg
     9481 cgttgtcgtt tcaaaagaac ccaggctaat ccgccatagc aaaataatat cacctggcaa
     9541 aataccttct tctagacgaa ccatattgcg tttgggaacg ggcttggctt ccaaaagcca
     9601 ggctgccaag tcacgctcgg gggaaatata gggtttgacc tcgtggtctt tatacatttc
     9661 ttcaacacga ttctgaagtg acatttactt tacctcacga attgcataat aatttccatc
     9721 attgtctgca aagctaatta ccttcatgaa accaaggtcc atgactggat tcgttgtgac
     9781 accacgttca acaagttctt cgtaagtttt ggctacatct actgatgtca ttaagattga
     9841 tggtgtacct aagtttaatt ctggctccat ttcagcaacc tctgccttat catgaagtac
     9901 aaattgtacc tcactatctg atttaggtgc aataatgtaa gaagtttggg ggccttgcac
     9961 ttgtttttct acacgttcaa atcccatttt ctctttccaa aattgagctg aagcctcaat
    10021 atcattcaca tataacataa cttgtccgat tgattgaatc atcttaaata cctcttttgc
    10081 gttgtacgaa catgtgttca aaccattata cactagatag ggatattctc caaagaaaaa
    10141 cgactcttag agccgttcaa aacctaggaa acgagtcccc tgaaaatgca gagtgcctac
    10201 atctccctct gctaaaaggg cgtattcatc tgaacgaagg cgaaattcct gccgttttcc
    10261 ctcccattca aacgttacat aataattggt tcgtgctact tcgttaccaa aaacatgggt
    10321 tcgtttagag acaagcttag ccttgcaaga ttctttgggt gcccgattgt tgtggtgcca
    10381 ttccataaaa tttttaatga tatggaaaca aactatcgct aatatgattg cggaaaaact
    10441 gtagaaaagg gccgtatgcc atactaggct tccatctggg tcaaacaagt tctcaaacat
    10501 cattattctc cttttacatc tgtaaatata gtatatcata ttattgtttt agatacgctt
    10561 tttatactag ataaaaattg aaaaaatcca tatttcatgg tagaatgagc ataattttga
    10621 acaagacaag aaaggatttt caatgaaaaa aatactagct cttgctctag cttcgagcat
    10681 cttgctaact gcctgcacaa acaactctac agctaatagc tcatcttcta cagcatctag
    10741 ttctagtcca agctcgacta cgacagctga tacaactgct tctagccaat atgccaaaga
    10801 tttggcatac gccattaaca atcccaaagc tacattcccc caactttcca atgaaattgg
    10861 tgaaaatgag gctgctgtta aaataaagac aaccgaaggc gacatcacta taaaactctt
    10921 ccccgagcaa gctccactaa ctgtagaaaa ctttctgact catgcgaagg aaggatacta
    10981 taatggaacg atcttccatc gtgtcattaa ggatttcatg attcaaggtg gcgatcctct
    11041 tggaaatggt actggtggag agtctatctg ggccggaaaa gatactacta tcgatgctgg
    11101 gaatggtttt aaagacgaga tttcagcttt cctttataac attcgtggct cactttctat
    11161 ggcaaatgct ggcgcgggaa caaatggaag tcagtttttc atcaatcaaa atacaacaga
    11221 catgtctagc caactctcta gttctagcta tcctggtaaa atcattgacg cttataaaaa
    11281 cggaggcaat ccaaacttag atggcaagca taccgtattt ggtcaagtca ttgaagggat
    11341 ggacatcgtg gataaaatcg cttcagtcga aacagacaat agcgataaac ctaaaacaga
    11401 tgtaaaaatt gagtctattg aaattctgaa agattacacc ttttaaaaat gaagctgggc
    11461 aagacatcat agatgtcttg cccagcttca tgtattctat catatccttt tatagttatc
    11521 tttatcaagg taaactgact gccgtcagtt cccatctccc gatagcaaac atctcccaga
    11581 agttagtaaa aggtaagctg ataccatcag ctctcatctc ccactagaaa aggttcactg
    11641 aacctcggcg cagtaggcgt caacacatta ctggacgcca ttgcgaggga aaaacgacga
    11701 aatcaagtca actttgttga ttactgatct ctatatagag acgcagtagg tctcggccaa
    11761 tcatccttca cttcgttcgg attcttggga gacccttgcg agggaaagac gacgaaatca
    11821 aatcaacttt gttgattact gatttctgtc tttccgctac atcttctctt ccaactccac
    11881 atcaggatat ttgtccgcga accagcggag agcgaagtcg ttttcaaaaa ggaaaactgg
    11941 ttggtcaaag cggtctttgg ctaggatgtt gcggcttgat gacatgcgtt catccaggtc
    12001 ttctggcttg atccagcgga ctgtcttttt acccattgga gtcatgacta cttcggcatt
    12061 gtactcgcct tccatgcggt gtttgaaaac ttcaaactgg agctgaccaa cggcacccag
    12121 catatactcg ccagtctggt agttcttgta gagctggatt gcaccttctt gcaccagctg
    12181 ctcgattccc ttgtggaagg atttttgttt catgacattt ttagcagaaa ctttcatgaa
    12241 aatttcaggg gtaaaagtcg gcagcggttc gaattcaaac ttgttcttac ctacggtcaa
    12301 ggtatctcct acctgatagg tccctgtatc gtaaaccccg ataatgtcac ccgctactgc
    12361 attttccaca ttctcacggg actctgccat gaactgggtc acgttggaca acttagcccc
    12421 cttgcctgta cgaggcaggt tgaccgccat accgcgttca aattcacctg aaaccacacg
    12481 gacaaaggcg atacggtcgc ggtgacgagg gtccatgttg gcttggattt tgaagacaaa
    12541 gcctgaaaaa tctttattga gcgggtcaat gacatcccct gtcgttgtct tgtgaccatg
    12601 tggctctgga gcaaattcca agaaggtgtc aaggaaggtc tgcacaccaa agtttgtcag
    12661 ggctgagccg aagaaaacag gtgtcaaatc gccgtccaaa atcgcctgct ctgaaaattc
    12721 attcccagct tccgccagaa gttcaatatc atccaaaacc tgtgcataaa atgggttaga
    12781 gccaaagagt ttgtcgcctt catccaagct tgcaaaacgc tcgtcaccac ggtagagttc
    12841 taaacgtttg ttatggaggt catagagtcc ctcgaaggat ttccccatac caatcggcca
    12901 gttcattgga tagctggcaa tgcccaagac ttcttccaac tcctgcaaca aatcaagtgg
    12961 ctcacgaccg tcacggtcca acttgttgat aaaagtgaaa acaggaatgt tgcggtgctt
    13021 cacaacctca aagagctttt tggtctgagc ctcgataccc ttggcagagt ccaccaccat
    13081 gacagccgca tcgaccgcca tcaaggtccg ataagtgtct tctgagaagt cctcgtgccc
    13141 tggtgtatct aggatattga cccgcttgcc tgcatagtca aactgcatga cagatgaggt
    13201 aacagagata ccacgttgtt tctcaatatc catccagtca gacttagcaa agttaccagt
    13261 ctttttcccc ttgactgtac ctgcttcacg aatctcaccc ccaaagtaga gcaactgctc
    13321 ggtaatggtg gttttacccg cgtccgggtg agagataatc gcaaaggtgc ggcgtttctt
    13381 gatttcttct tgtagtaaca taatgtttcc ttttcatttt ttgtattttg attcatagca
    13441 gagctgagct cttatcctat tcgatttaca ttggattcat ccttattctt tactagacaa
    13501 ctctcttatt atatcggaaa taagggaatt tttcaaacta ttgaagaata ggtctacaga
    13561 cctatactat tgtattataa atatgttaca ataagtatga gatgtattct atatactaga
    13621 aaaagaaaga taaaataatg aacaaacaaa taaaaggttt atcaaccaag gaagtacaag
    13681 aacgtattca aaaccagcaa accaatcatt ttaagacaaa gacctgtgcc agtaattggg
    13741 aaatcttcag acgaaatgtg tttacatctt ttaacgcact aaattttgcc attttcttag
    13801 ccttactagc tgttcaggca tggtccaacc ttttcttctt cggagttatt gtcctcaacg
    13861 ctgtttcagg aatgctgaca gaatggcgag cacgacgaat gattgacaaa ctcaacctga
    13921 tgaacaagga ttttatccga gttgttcgcg atagcgagac aatatctatt gcaccagaag
    13981 atattgtctt agatgatgtt ctcttgctgt ctgctggcga acaagttcct agtgatgcta
    14041 ttgttttaga aggtatagcc gaggcaaacg aggccatgtt aaccggtgaa agcgacttga
    14101 ttgtgaaaaa tactggggct gaattattgt ctggtagcta tctagttagc ggacagattt
    14161 acgcaaaagt catccatgtt ggcgcagaaa actatgccaa taagctcatg cttgaggcga
    14221 aaactcacaa acctatcgtc tctcgtattc tttacaatat ggataaaatt gctaaattta
    14281 caggaaaaat tatcattcca ttcggacttg ctctttttct agaagccttt ttcatcaaac
    14341 ttcttccctt aaaagactca gttattacca gctctactgc cctactaggt atgttaccaa
    14401 agggaattgc tctgctgacc atcacctctc tcttaactgc cgttatcaaa ctgggaatga
    14461 aaaatgtcct cgtacaagaa atgtattccg tcgaaacact tgcccgagtt gatgttcttt
    14521 gtttggataa gaccggaacg attactcagg ggaaaatgac cgtcgaaaac ctgctcccct
    14581 taaccaacca ttattcactt gacactatcc aacagatact cgctacctat atccagacaa
    14641 gtgaggatac taattcaaca gctcaggcca ttcgaaaaga atatggtgat ttagagcacc
    14701 actataaagc tagtcacatc atcccatttt ctagtgatag aaaatggggg gcaatgacaa
    14761 tagaaaacat tggtcacatt tttctagggg caccagaaat gttactaaca caaaatcctc
    14821 cttctgtttc tgaggcacag gctcgtggtt cccgtgtcct gattcttgcg cttagccaac
    14881 agtcccttcc ttcttctcaa aatcagctac ctgagaatat tgaacctcta gctctattag
    14941 aaattgctga ccctatccga gaagacgcca cagaaacact ggcctatctt cgctcgcaag
    15001 aagtgacact aaaaataatc tctggtgaca atcctgtgac ggtctcacac attgccaggg
    15061 aagctggatt tgctgactac gatagctata tcgattgttc caaagttgac gacgaagaac
    15121 taattgccag agctgaaaca accgccattt tcggtcgcgt atccccacat cagaaaaaat
    15181 tgctcatcca aaccctcaaa gcacagggac atactactgc aatgactggt gatggggtca
    15241 atgatatcct tgcactacgc gaagctgatt gttccattgt tatggcagaa ggcgatcccg
    15301 ctaccagaca aatcgccaat ctagtcctcc tagattctga atttcgcgat attcctgaga
    15361 ttctctttga gggacgacgc gttgttaata acatctccca cattgctccc atctttctta
    15421 tcaaaacaat ctactctttc ttacttggcc ttatctgtat cgctagtatt gccctaggta
    15481 aagcagaata tttgttagtt ttcccattta ttcaagtaca aatgaccctc attggtcaat
    15541 ttgtcgaagg ttttcctcct tttatcctaa cttttgaacg aaatatccgc cccgtagaaa
    15601 aacattttct cagaaaatct cttctcttag ccctaccaaa tgctctcatg gttgttctca
    15661 gtgtccttat tttccattta atgcaagtat ttggatactt aaacttgcat gacatgcaaa
    15721 ccctctctta ttatgttctt ggttcaacag gtctactggc tgtcattcgt gcctgtttgc
    15781 cactgacaaa agctcgactg gctcttatta tttattccgt tttcggtttc ttcatcagct
    15841 cccatttcct acatggtctg attgaaatcc accccctaaa cagtcacaca ttgccaatct
    15901 attctggatt aatgctcatt attatccctg tctttttctg gattagctac aaacaaggcg
    15961 catttaaaaa ctaaaaataa gacttgaaaa actaatttca agtcttattt tttcaatata
    16021 tgcgaattca tttgtttgct ttcttttttc aaataggcaa ttaacatagc ttgtatactc
    16081 aaaatagaga aacagagtag gcaggttacc aagaagaaat tcaaaggaag attattagta
    16141 ttcactaaag gtgcctgtct caaaaatcca taatttccgc cagttaaaag agctactcct
    16201 agaatcagca tattcataat aagcgtatat ttcactacct cttttccctt caacatctcc
    16261 ccttctaaat cagataacag gtacaacata caattaaccg tcaaggcgta gtgaccaata
    16321 acaaaagtaa agaaggtaag gtgtggaaaa gcaaacgggt caaatactgg atgaataaaa
    16381 gccgcaagcg atccaaaaag accgagatag gcaaaataac gtttcaaagg tccgggcttc
    16441 gcccaaagaa taaaaagcat agccaagcga caatgataaa aaggaagact ctctgaaaga
    16501 ggagaatcag ctacgatata ccaagtataa agggagacaa tctgtataaa ttgaagccac
    16561 caaaaaacaa tatgaaacca tcttttttga taacaacgaa aacaaagatg gagcatgaaa
    16621 aaccaaataa tcatgagaaa cagatgttcc aatacgttca ggttcggtgc ttcagaaatc
    16681 tgattgctga aaaaatcact catcttatta aattcctctc tttccccaaa agtcagtata
    16741 tcaacttttc gatgttttga caagacttgc caaaaaagag aggtctcgcc tctctacttt
    16801 tctactgctt ccactacttt cccaagattc atggaattag agcctttaaa gaggatttgg
    16861 tcctcttttc ctagactttc cctaacctgt ttaaccagat cttcaaattg gtcctgctct
    16921 gcatttttcc taaagaaata gacttttcca atcgggaaca tctgactagc caactgggcc
    16981 agaccttcaa tatcctgacc gtagaaaatg atggtgtcta gcacatcagg cgacaggctc
    17041 aaaatcatct gattgtggag atcaacggac tggctcccca attctttcat atctgccaaa
    17101 acagctattt tcttgccgcc ttcattggct ggaatgctag agaaggtttc caaaatcaag
    17161 cgcatggccg ttgggttggc attgtagaca tcactgagaa tatcggctcc gtttgctgct
    17221 tttttccact cggtacgatt gcgggtcaag ttcagaccag ctagggctga cttgattgcc
    17281 ttatcaggca cacccaaggt cttacccaca tagcttgcta ccatagcatt agtggcattg
    17341 tacttacccg ttactggaag gaaaatgtcg ccgtccataa agttgacggt gaaggtcagg
    17401 ctatctttgg actcgaccag actagtcacc tgcaaatcag cctgctcacc gaagcgaatg
    17461 aggtctacat ggctcggcaa gagcttatcc gcaatcggat ctgctgggat caagagttta
    17521 ctacctggct ccattccatc tgcaatctgt aattttcctt tggcaatctc ttctcgtgag
    17581 ccgaaaaatt ccaaatgggc ttcgccaaat agagtaataa ccgacagact tggtttggca
    17641 atttcagata ggagatgaat gtcacccaag tggtcttggc ccatttccaa gaccagtttt
    17701 tctgtatcct caggcatatg gaggacggtg tatggcagac cgatttcgtt gttatagttg
    17761 ccctgagtct tgtaagtctt gtaagtcgtc gccagaacat cgtgaatcat gtccttggtg
    17821 gtcgttttac cgtttgatcc tgtcacagca atgacttcta cccctgtttt ctctaggtag
    17881 taggccgcta attgttgaag cgcagccaag cagtcatcta ctaggatgtg aggaacatca
    17941 aggctgactt cagacagggt tactgcgcag ccattttcaa aagcaacagg aataaagtca
    18001 tgaccgtcac gtgctccctt gaggggaaca aaaagatccc cttctgtaat caggcgactg
    18061 tcgaactcca ccttgttaag ggctctatca ggataaagac taatatcatt ttttgcgccc
    18121 aagacctgag cgacttcgtg tagggttaat ttcattgttt tctccaataa acttaaaaag
    18181 agctttcgct ctctctatta taccactttt tatcgaactt gagtgaggac accatctttc
    18241 atctcataaa ccttgtcgca tttcttcaat tgctaaaaac atcttactcc acactttcta
    18301 agacataaaa acttgtctca aactgcaagt cttccctcaa aagagctttg actttacatt
    18361 tcttttccac ataggcaaga atctctttct gcttctgcgc tgaaaccgac tcaccaattc
    18421 caatcaacac ctcaaaacgc tgattgtcca agcgactctc cacctgaaca ggcatggttt
    18481 tattgccttc ttggctggca tagtagccct gcacacacat ggtgatgcag gcagctaagc
    18541 caatattaac tagactaacc ggagtctccc ccttctccgt caccccaaag gtacgaaccg
    18601 gttcgccata accttgagaa agagcctgaa acagaccttc cccttttact gtcgtttgat
    18661 acataaatac ctccagaact tgctccattt tattcctttt tgcaaacctt tgcaagaaaa
    18721 aagattggaa tgattccaat cttgataata attaaatgag gtgactttca cgtttttcaa
    18781 acatttcttt ggccaagcca accaactctt caatcaaatc tggataagct aggcccatat
    18841 tatcccaaag gagtggatac atagaccact gggtaaatcc tggcatggta ttgagctcat
    18901 tcaggaagat gtcgccgtct tctgtcagga agaaatcaca gcgagaaagt ccacaaccac
    18961 cgatagcacg gaaggcattg gctgcattat cacgcatgat atccatgata gactcatcaa
    19021 tcttagctgg gatttccata gtaatcttgt tgtcgatgta tttggcatcg tagtcataaa
    19081 aagcaacgtc tttgactact tcgccaggaa gggtggtttt cacgtcagca tttcccaaaa
    19141 taccgacctc aatctcacgc gcattaaccc cctgctcaac gaggacacgg ctatcatact
    19201 tgaaggccag atcaagtgcc ttacgcaagc cagctaaatc ctcagctttt gagataccga
    19261 cacttgaccc catattagct ggttttacaa agactggata agtcaatttc ccttcaatct
    19321 ctgcaatctt ttcatcaata ttttcaccct cgataactgc cacataaggt acttgggaga
    19381 ttccagctga ttccaaaata cgcttagttg taatcttgtc catggcaacg ctggaagaca
    19441 agatattggt accaacatac ggcaaacgaa gcacttccaa gaagccttga atagatccgt
    19501 cttctcccat tgggccatga agaacaggga aaacaaccgc cttttcttca taaatatcgc
    19561 tcggacggat tttttgctct tcaacaatcg tcgcgtttgt catgagtttt tcatcggcag
    19621 acggtgtttg agaaaactct tgcgtcttaa taaagtcccc tgtctggcta atgaaatagg
    19681 ttttgacaaa aaatttatca taattgatgg cacgcatgat gctttcggca gacagaacag
    19741 atacctcacg ctctgcagaa cgcccaccat atagtaaaat caaggtttct tttgacatat
    19801 attttccttc ctgtatcaac gctattactc ttagtatagc ataatttaac aaatcatatc
    19861 tatcctatct taaaattagg aacgtatcta actacagagc agctatagct ctgtgcgatt
    19921 ttcaatagcc ctcaacaggg tcacttcatc tgcatattca atatcactgc ctaccgctaa
    19981 gccacgagct agtcgggtta ctttgattcc cgcaggtttg aggacacgtg agatatacat
    20041 agatgtagcc tctccatctg ctgttgcatt ggtcgccaca ataacttctg taacctcatt
    20101 gtccatcagg cgagtgagga gggttttcaa attaatatca tctggtccga taccattcat
    20161 gggagaaatc aagccatgca agacatgata aagaccgtgg tattcttgaa tattttccaa
    20221 ggctgtaaca tctcgactat cctctacaat caaaatagta gattggtctc gcgttgagtc
    20281 ctggcaaatg gcacaggggt cctgatctgt caaattacca caaatagagc aataagatag
    20341 gtctcgcttg gctgccaata aattttttgc aaactcatta acgacatcat cctccatgcc
    20401 aatagtataa aaagctaaac gggtagccgt ttttataccg atacctggca atttagagta
    20461 gctatcaatt aacttggcaa taggtgtagg gtaaagcata agcctcctta attcattggg
    20521 tgaagtgatt gatatagatt gataatttct tgagtaatta tcttagtagt tgttgaactt
    20581 tgattggtca agtttggtag gacaactgct accgcaattt gaggattatc actaggcgcg
    20641 taggcaacaa cgttggtgtt gatcgcagta accacatctc ctgaagctgt tgttgtatag
    20701 gtttcggctg taccagtctt ggcactgatg gtcacggccg caccacgacc gatagcacta
    20761 cctgtattaa agcgcccacc gccattgaca acttggtaga aaccttgacg aagaagagac
    20821 atatcctcag cggaaatatt aacctgattc atctccttac cagatacggt ttcaattaat
    20881 tctcccaaac caccttgggc attattccca taaattccct caacgaggtg tggagaaatc
    20941 cgtgttccat tattcgcaat ggtcgctgca tactgtgcca tctgcatcgg tgtatagtta
    21001 tcaaactgtc caaaagcatt ggtaataaaa ttggctgtcg aatactcttc cggtaaaaat
    21061 cctgtagatt cgagtggaag gtcaatacct gttgacgcac ctaaaccata ctctgcaaaa
    21121 gtcgaacgaa gcttagtcat ggcatttgtc aatgtatcgc catcattcaa atacatgtta
    21181 gctgagtagg tctgaccaag tagtcccaaa gcaatcttaa ccatgtaggc gttagaagaa
    21241 tattccagag cctctgtcgc atcaatatta aaactaacat aggccccata ccaagatgta
    21301 attggtgctg aacctgcaaa atagattggt tcatctaatt gaacctgatt accactgata
    21361 actccatttt cccaaccaga gctgattgtc gctcctttga cgatggaacc tggtgtaaag
    21421 acacttgtaa tggtaccaag agcatcctcc gtaatagtac ttgagccttt ttcgtgacta
    21481 tatcctgaca tagcaagtac tgcacctgta gaaggattta atgcaactgc ataaacacct
    21541 tccgagtaaa gcgcactacc agtagctagc tcactttcaa agtattttct caaaatagca
    21601 ttgaccccat cttgaaaggc taaatcaata gtcagtttaa tattatttcc ctgctgtcct
    21661 tcttggattg tctcaatact ttcgatattt ccatttctat ctaggtttat ttgttttttc
    21721 tcacgttgac cttgcaagac ttcttcatat tgtttctcga ggtaggcagt tcccacacgg
    21781 tcatttgaag agtagccctt ggatagatag tattctgcat cttctgcagg caaaccagcc
    21841 tgttcactcg ttactgtacc gataatggag ctgagggaag ttggtaaaat cgtccgttgc
    21901 cagttattgg tcgttgaaat gcctggaagt tgactttcat tggctacgat atgagcaacc
    21961 tgttcagaag tcagagtatc cgttaccaaa ttaacagtag agaagtaagt agctccattc
    22021 atctgcttga acagttcaat cgctttattg tcttgctcag aatattgtaa tgcttcggca
    22081 gggatactat caaccgcatt agaataaatt gtcgattcac tcaggtagtt gccatcagaa
    22141 tcgtattttt tatcttttgg caaggcctcg actacctgac gataaacctc ttcatctgcc
    22201 aaataataat cagccttatc acgttgagta attgttacgt ctgaaacatt gacccactgc
    22261 aagagtttat tagctacttc tttcatttcc tgagcagaca tcttgttggg acgtgtgaag
    22321 gagacgacct gctgaatctc gttttcaacc aaaggttttc cttgcgcatc gtaaatctgc
    22381 ccacggatag agccattgct gatgattttc tgactggcag tagacagctt attactataa
    22441 aaatcatgat tgatgatctg catatctgcc aaacgcaata tcaaaactag gaaaaggaaa
    22501 atcacgatag aaaataaaat atttaaacga agggaaataa aatttccatc gtgttccaaa
    22561 ggcttgttct ttcttttttt cacttcaaag acctcattct agaaatatcc ttcttattat
    22621 accacaggca aaaaatattt tttagacaga gcctcctttt cagaaaatat ttccttatga
    22681 tttcttcacg agacaagctt gcactatctc ccattgactg tgaacagatg tttccacaaa
    22741 ctgttgatca tgggaaacca agaggacact tccttcatat tctttcaaga atgtttccaa
    22801 agcttcaata gctgccatat ctagaaaatt tgtcggttca tctaatatca aaagatttgc
    22861 atccgccaac aataccttag ctaaggagag acgaacacgc tcaccaccag acaaatttgc
    22921 taccttctgc tgagccttat cgtaagaaag tcctaacata cctaataaat tgagaatcgt
    22981 catcctatct tgaagagagg tacaactaac attttcaaaa gcagcctttt cttcatcaag
    23041 gtttatcaaa tcctgtgcaa accaaccttt tgaccagctt gaaggctcaa ctgcttggga
    23101 gcaggaaaga actcgactgg tc
//
LOCUS       DASFRC010000012        22743 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.012, whole genome shotgun sequence.
ACCESSION   DASFRC010000012 DASFRC010000000
VERSION     DASFRC010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 22743)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22743)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22743
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.012"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(88..618)
                     /locus_tag="U1087_000360"
     CDS             complement(88..618)
                     /locus_tag="U1087_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HEM4754876.1"
                     /translation="MKQNQLRQLTEISLFAALICVVVFFIRIPFGSQFVHLGNALVVV
                     GVLIFGAKKGALAASLGLGIFDLLSGYASVAWITILESLIVCFILHLFYEKFLKENDR
                     LTNIILVGIIAALTKIILNLLKYTLTGSLVGGLTPSASFLAALGRILGTYGTAITTII
                     AVPILYQVCKRLYKRK"
     gene            complement(615..1463)
                     /locus_tag="U1087_000361"
     CDS             complement(615..1463)
                     /locus_tag="U1087_000361"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine kinase"
                     /protein_id="HEM4754877.1"
                     /translation="MVQRLLLANDLPGVGKVALATSIPIAATCQVETILLPTVLLSSH
                     TGGFPDVVVEDMTDLNRAYFEQWKNLNLELAGILSGYCRNPQQLSQLAMYAKQTETPL
                     IVDPVMGDGGKLYTGFTSTYVDAMKELIQSAKLILPNVTEAAFLTGRDYLGACYDRVA
                     IEDLLEALAEQVSADIVLTGISFDDSQIGVAYFQQETGEITTYMSKKYPANFFGTGDI
                     LSTLLAVATIQQINLHQAIPLALDFIDKSLERTLALDRDLKFGISFEPFLAELQQAFQ
                     TLKEKL"
     gene            complement(1659..2348)
                     /locus_tag="U1087_000362"
     CDS             complement(1659..2348)
                     /locus_tag="U1087_000362"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HEM4754878.1"
                     /translation="MKFGIIAAMPQELKILVEHLQDATEIDVLGRTYYQGRIGQHEVV
                     LVQSGIGKVMSAMSVAVLADRFSVDVIVNTGSAGAVAEGIAIGDVVVANQLAYHDVDV
                     TAFGYAYGQMAGQELYYPADQVLLEQLRTVLAEQEMISHVGLIVTGDSFIAGQERIAT
                     IKTHFPEVLAVEMEGAAIAQAAVNTGKPFLVIRAMSDTAQGDANITFDEFIIQAGERS
                     AQTLIAFLEKN"
     gene            complement(2357..2677)
                     /locus_tag="U1087_000363"
     CDS             complement(2357..2677)
                     /locus_tag="U1087_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754879.1"
                     /translation="MGKPLLTDEILEKAKKKQYSDQSSQFGHYRPNQDISMDDALFDP
                     YLEEDYQGYEEGQTIRIPVKPTVVKSRRIETIKREAFRSKVNKILFWVIILLIMFIIA
                     VLFI"
     gene            complement(2688..3233)
                     /locus_tag="U1087_000364"
     CDS             complement(2688..3233)
                     /locus_tag="U1087_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEM4754880.1"
                     /translation="MNFEEKTIERTEIFKGHIFDVVVDDVQLSDGTMSKRELIFHRGA
                     VCILAVTPEGKMILVKQYRKAIERAIYEIPAGKLELGEEDTLEDAALRELEEETGYTS
                     DKLTLLADFYSAIGFCNERIRLYLADNLIKVENPRPMDEDEVIELHEVTLEEALNLLA
                     TGDICDAKTIMAIQYLQLMRK"
     gene            complement(3242..4624)
                     /gene="glmU"
                     /locus_tag="U1087_000365"
     CDS             complement(3242..4624)
                     /gene="glmU"
                     /locus_tag="U1087_000365"
                     /EC_number="2.3.1.157"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HEM4754881.1"
                     /translation="MSNNYAIILAAGKGTRMKSDLPKVLHKVAGITMLEHVKRAVDAM
                     EPAKTVTIVGHKAELVQAVLEGQSEFALQSEQLGTGHAVMMAEPALAGLEGQTLVIAG
                     DTPLITGESLKNLINFHVSHKNVATILTAQADNPFGYGRIIRNADGEVQKIVEQKDAN
                     DFEKQVKEINTGTYLFDNKRLFEALKDINTDNAQGEYYLTDVISIFRQAGEKVGAYVL
                     RDFDESLGVNDRVALATAEAVMRKRINEKHMVNGVTFINPDATYIDIDVEIGAEAVIE
                     ANVVLKGQTVIGERTVLTNGTRVRDAKIAADVVISNSDIEESVIEEGVTVGPYAHIRP
                     GSLLKKDVHVGNFVEIKASTLGQGTKSGHLTYLGNATIGNNVNVGAGTITVNYDGKNK
                     FKTTVGDNAFVGSNSTIIAPVTIGDNALLAAGSVITKDIPVDAIGIGRGRQENKEGYA
                     TRFPFHPSQK"
     gene            complement(4800..5270)
                     /locus_tag="U1087_000366"
     CDS             complement(4800..5270)
                     /locus_tag="U1087_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASCH domain-containing protein"
                     /protein_id="HEM4754882.1"
                     /translation="MTPTQLWQEFLAINSQAGPEPEAWAFGAEADRLADLVARGIKTS
                     TSSAHALYAVEGEEIPRAGGYDIILDGQGQAVCIIQTTKVYVTPFSQVTEEHAYKEGE
                     FRQGGDLSDIKAKSLIHWRQVHEELFTIWLAEAGLSFSEDMLVVCEEFELVYPK"
     gene            complement(5267..5548)
                     /locus_tag="U1087_000367"
     CDS             complement(5267..5548)
                     /locus_tag="U1087_000367"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754883.1"
                     /translation="MLIFDDNPHVAVVICKHISEENKPITYISHDLEDGMWQFLCGDI
                     HDIADVQLIALVEILQFGITETLLNQIPYGFEALLDQAKNWQISRKEKP"
     gene            complement(5560..6258)
                     /locus_tag="U1087_000368"
     CDS             complement(5560..6258)
                     /locus_tag="U1087_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006151199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase"
                     /protein_id="HEM4754884.1"
                     /translation="MTKTVLITGVSSGIGLAQAGIFLENGWRVFGIDQASKPDLAGDF
                     HFLQLDLTGDLTPVFSWCQSVDVLCNTAGILDDYRPHLDIEEDELARIFAVNFFAVTR
                     LTRPYLQQMVDRQSGIIINMCSIASSLAGGGGSAYTASKHALAGFTKQLALDYAKNKV
                     QVFGIAPGAVQTGMTQKDFEPGGLANWVADQTPIGRWSQPSEIAELTFMLATGKLASM
                     QGQIITIDGGWSLK"
     gene            complement(6251..6487)
                     /locus_tag="U1087_000369"
     CDS             complement(6251..6487)
                     /locus_tag="U1087_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018367459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2829 domain-containing protein"
                     /protein_id="HEM4754885.1"
                     /translation="MTFEEILPGLKAKKKYVRTGWGGAENYVQLFDTIEVHGQKLEAT
                     PYFLINVTGEGEGFSMWSPTPCDVLATDWVEVYD"
     gene            complement(6568..7371)
                     /locus_tag="U1087_000370"
     CDS             complement(6568..7371)
                     /locus_tag="U1087_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754886.1"
                     /translation="MNAISSLQRMLTKENKRYMRKLHAYLMLASAFHEQEERATELLL
                     SIYQDVLDAQADGQSAEDFLGKDSKQMADELLADLPPIRWYYGLRLTGLISLVYISWF
                     FLGLFGVTGEMVLEWRGLLCDLLLALILPSSAFFILKNLVYERSKIKFYLLMGMWGLS
                     FVGLVGLRFWISRQFYESLPLPLWASLLVILGVAAGLFYYRSKSAIVDTLIPAYVLTV
                     LSGFSQLLASQFGYGPQDWTGWLPLLFMVLAFFSTLAGTFFLLKKENMG"
     gene            complement(7393..8187)
                     /locus_tag="U1087_000371"
     CDS             complement(7393..8187)
                     /locus_tag="U1087_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754887.1"
                     /translation="MSKQMEYRKQIEVIESQLTRENKEYMGRINGYMMIASVFHRQEE
                     AVTAQLLSIYQDVLEAQKDGLSAEDFLGKDSKQMADDLLSYLPPIGFMEVANLSGLML
                     IIYLGSQWLMDFAGTGTISINWLGLVCDTALSFFLPAGIFLVIRGLIYQTSKIKVWAS
                     FLCIPLLFLLICGLRLWAIPKEPDLVLTGWGLLVPLTLLGLALLFFQKGKLVRYVFLP
                     TYLFMIVGGVVNMVMTVPVWLNLVLVILPAMAFWIGSAILLVRKEK"
     gene            complement(8189..8506)
                     /locus_tag="U1087_000372"
     CDS             complement(8189..8506)
                     /locus_tag="U1087_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEM4754888.1"
                     /translation="MKETQMLKGVLDGCVLQIISQKEIYGYELVQELRNQGFENMVGG
                     TVYPLLQKLEKNSLIFSQNKPSPDGPDRKYFYLTDQGKAYLEDFWSQWTELVQKVQRL
                     KGE"
     gene            complement(8503..8667)
                     /locus_tag="U1087_000373"
     CDS             complement(8503..8667)
                     /locus_tag="U1087_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754889.1"
                     /translation="MKLDKKSRENWKLAGITLVTAIITGWALDSILILGILLASGLLF
                     CFFVEEEEDL"
     gene            complement(9035..11047)
                     /locus_tag="U1087_000374"
     CDS             complement(9035..11047)
                     /locus_tag="U1087_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEM4754890.1"
                     /translation="MFGLTVRLALTNLKKNRRLYFPYALMTILSTAIAYIFASLAFHP
                     DLGQVKGANGVIQVLGFGMIVVMLAVAIMVFYANSFVMKQRSKEFGVYSILGLEKKHL
                     FLMTFLENLVFSVGTILAGLLLGLALDKLFYALLLKAMQMPVVLASTFQLKSLVTVLI
                     YLFGIFALVSLFNIGKLGLTDSLKLVQGKKRGDKKSGLLWLQTLLALILLGTGYAIAQ
                     LVTSPMQAIPSFFGATLLVIFGTYLLFHAGVISLLNWLKQRQTYYYKPENFISVSNLI
                     FRMRKNALGLATITILSSMFLVTMVGGLNIYIGGKDYIANQNPNDYSIDVGMQPTTSK
                     AQTEKWEEWAEAILEETDIPVESKVVYPYQQAYFSEVTNQQVRFLTDEEAAGMNFSDR
                     VGIGFVFDQASYEKMTGEKLQLASDQVAIFSKGVQYQAGQTLTFDEKEMEVVQVLPKN
                     VTLGHLPDHGSFLLSQYLVIVVQDLTVFEKQTRSRYYMGFESSLSEEEQVNSQEVFLS
                     GTFESELWESNILPNGTNAISLAYRAYAMRSFFSFAGSLFFIGLLLSLIFLMAVVLVI
                     YFKQISEGYEDRDRFVIMTKVGLDEDQTRQSIRKQLLTVFFLPILLAFVHLAFAYKML
                     SSILLSIGVVNAGLMLQVTAGICGGYLLLYLVVYAITTRSYKQIIS"
     gene            complement(11049..11807)
                     /locus_tag="U1087_000375"
     CDS             complement(11049..11807)
                     /locus_tag="U1087_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000173375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4754891.1"
                     /translation="MSVLDVQHVQKIYSSLFKAGQVEALKDIHFTVEKGEYVAIMGES
                     GSGKSTLLNILATLDKPTQGKVLLNGLDTQSIKSKEAAAFRREKLGFVFQDFNLLDTL
                     SVKDNVLLPLVLSRYPIDEMNKRLVHTLNSLGIATLQDKMPYEISGGQQQRVAVARAI
                     ITQPEILLADEPTGALDSKSTATLLDIFEKINQEGQTILMVTHSTVAASRAKRVLFIK
                     DGILYNQIYRGERTSQEMYQLISDTLTLMANRGE"
     gene            complement(11903..12895)
                     /locus_tag="U1087_000376"
     CDS             complement(11903..12895)
                     /locus_tag="U1087_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEM4754892.1"
                     /translation="MNKDDFGSLVPGFLTSWLGHRLIFLIAYAVFAVAILAYSSLFDI
                     QRNLVFYALTLLTICWLLALLWDFFREFSRFGKIWRGQKVAIGTASERLLQEKVERLE
                     VQNKQILEKQRQEQTELDDYYTLWAHQMKTSIAASQLLVKEVDSSPVRHQLETELFKI
                     EQYTGLVLNYLRLQSFHDDLVIESVNLDELIRNLVRKYSLFFIQANTSLDLGQLDRTV
                     KTDKRWLGLLIEQILSNALKYCQGGSVSIFLDGDELVIRDTGIGIAESDLERVFERGF
                     SGFNGRRTQQSSGLGLYLSRKIAAELGYSLKLKSKVGQGTEVRIGIKEVELIFD"
     gene            complement(12888..13571)
                     /locus_tag="U1087_000377"
     CDS             complement(12888..13571)
                     /locus_tag="U1087_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM4754893.1"
                     /translation="MQKILLIEDDKTIRQLVAKNLINWGYQVQEVKDFQTVLEQMEEF
                     QPHLILLDIGLPFFNGYYWCQEIRKTSRVPIMFLSSHDQPMDIVMAINMGADDYVTKP
                     FEMTVLLAKIQGLLRRTYDFVGEQSLLWFEEISLDLKTMQVSYGQVVEELTRNEFQIL
                     RVLFEHGKEVVGREELMRELWNSDIFVDDNTLSVNIARLRKKLAELDLPDVIATKKGV
                     GYGLVWTHE"
     gene            13740..14921
                     /locus_tag="U1087_000378"
     CDS             13740..14921
                     /locus_tag="U1087_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2974 domain-containing protein"
                     /protein_id="HEM4754894.1"
                     /translation="MPNLLTYIEETQYDNFYDKPINKLDILALTELSYLPFDNLVPYS
                     FTENGVRLDWLAATFEETYKNNFPPFSMVTKNRLALLGLLAKSKRFKSIKAFGFIDDY
                     QLEQEKQFSAISYRIDRKTIVTCFRGTDDTIIGWKEDFHMTYMDEIPAQRAASGYLEK
                     LMMQQGGHFYLAGHSKGGNLALYAACQQATDQQDRILAIYPFDSPGLHKKHLEAPSYQ
                     AIHQRIFPVIPQNSIVGMMLETPENAQIVQSNTLSILQHISFSWEVDGSDFKLAPALT
                     SDSLQTDQALKTWTASLTDDELRDFFDLFFGIFIKAGIERFSDITVNPLQKLQEIDRL
                     RKEIAPEEAEMVDKLIRLLFDTRYQIWRDNISTSIPSPEISLPDWRKLFQRNTTENKE
                     N"
     gene            complement(14936..16060)
                     /locus_tag="U1087_000379"
     CDS             complement(14936..16060)
                     /locus_tag="U1087_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase"
                     /protein_id="HEM4754895.1"
                     /translation="MKLPRFGVEEWLNVHENSAIYDIAGVSISSLTLEELFALSGTNP
                     EDFYKKLQGTKLNYGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYGLIE
                     PGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEEHGWLPDLEKLRQLIRPNTKMICIN
                     NANNPTGAVMDRAYLEELAEIASEVGAYILSDEVYRSFSGLDVPSIIEVYDKGIAVNS
                     LSKTYSLPGIRVGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAHYQEILERN
                     RRILEENLAILDQWIEGEPLVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEYGVLLV
                     PGNRFERDGYVRLGFACEQETLIKGLEKLSQFLRRFDKEN"
     gene            complement(16224..16985)
                     /locus_tag="U1087_000380"
     CDS             complement(16224..16985)
                     /locus_tag="U1087_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000043863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEM4754896.1"
                     /translation="MSHQLENAKNLYLRGIRDGEIKEVHEHYMGATYTQHSTGVPDEK
                     EGFATFFEDFFKRNPKREITIVRAIEDGNFVFVHVHQKLNDGEAEWVTADIFRSDENG
                     RIVEHWDVIDAYPKTIGQTDPIYADFELTDLDKTEDNKKIVRRFLVDVLQNGEIEKFD
                     NYVAADLIQHNQEIAQGGAAYKDYLVDKAVDYDFVFKVIGQGDYVVAYSKVWIAGQDY
                     AHFDIYRLKDGKIVEHWDNKEVMPEKKDLTNLGKF"
     gene            complement(16997..18508)
                     /locus_tag="U1087_000381"
     CDS             complement(16997..18508)
                     /locus_tag="U1087_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease/substrate-binding
                     protein"
                     /protein_id="HEM4754897.1"
                     /translation="MNLFETFIERKDEWGIALFEHLRISLLALIIAIAIAVPLGLILS
                     SKKRLTEWSLQITGIFQTIPSLALLGLFIPFMGIGTLPAVVALVIYAIFPILQGTLTG
                     LGEIDPSLEEAATAFGMNKWEKLKKFKLALAMPILMSGIRTASIMIIGTATLAALVGA
                     GGLGSFILLGIDRNDSALILIGAVSSAILAVLFGYGIRLLQDKKPKTILLALLVTLFT
                     VGASYVPMLNFSTKQLVIAGKLGAEPEILINMYKLLIEDQTDIKVEIKPNFGKTSFLY
                     EALKSGSIDIYPEYTGTITSTLLKNSPMDLSTNPEEVYTYAKEAILEQDGLMYLAPMA
                     FQNTYALAVTEDYAQDHGIEKISDLAKVQQTAVAGFSLEFNDREDGNIGLKNLYNLQL
                     NVKTMEPALRYEAIKSGNVQIIEAYSTDSKVVTYKLKILEDDKQLFPPYQAAPLLSKE
                     TLEKYPELEQVLGVLAGKISTEEMTQMNYAVDVEGKSAEQVAREYLEQEGLLK"
     gene            complement(18508..19239)
                     /locus_tag="U1087_000382"
     CDS             complement(18508..19239)
                     /locus_tag="U1087_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4754898.1"
                     /translation="MIDYQNVSLTCKVSGPILKNLTFDIQEGEFFVLIGPSGSGKTTT
                     LKLINRLIEQTEGEVFFQGKRLKDFDLRELRLETGYVLQQIALFPNMTVAENIALIPE
                     MKGLGKEETLTRTRELLTKVGLEPDSYLDRLPKDLSGGEKQRIGILRAIIANPKVLLM
                     DEPFSALDPISKAQLQDLIKELHEEFKMTTVFVTHDMDEAVKLADRICLMQDGQVVQL
                     GSPDELRNYPANDFVKEFIRARGGM"
     gene            complement(19232..19681)
                     /locus_tag="U1087_000383"
     CDS             complement(19232..19681)
                     /locus_tag="U1087_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM4754899.1"
                     /translation="MPEVRKRSKDYARMFDQQVGLYEGYARRHGLNAKCLSILMWIYY
                     NPGGVTQNWVSKKTYSSKQVVNATVKKFLDRELVVLEENPADKRHKKIKLTEEGQQFA
                     SRILDPLEEAENKALSQLSQEEQELMLGLIQRYSQSLMAILKGEDDD"
     gene            complement(19991..20527)
                     /locus_tag="U1087_000384"
     CDS             complement(19991..20527)
                     /locus_tag="U1087_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtxH domain-containing protein"
                     /protein_id="HEM4754900.1"
                     /translation="MVKKSSSVWTSLLLGAAGGAAAAAFLASKTGKTVKEKVVNFAND
                     YKENHEEINADFVTKAQDLGKQATERFTEVKTQLETGELTVEDLVKSGKEKSLETFEQ
                     IKEKIAEQNLSTADILEAIKAKTAKTPTVDLTEEDIEDAVVVSEDIEIDIEDVQTEVV
                     SETVSEVASETASETVEG"
     gene            complement(20511..20924)
                     /locus_tag="U1087_000385"
     CDS             complement(20511..20924)
                     /locus_tag="U1087_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF948 domain-containing protein"
                     /protein_id="HEM4754901.1"
                     /translation="MIIEISVLIIALSIAAVAVYIVLLLKKLGTVTDEAQQTLKVLTS
                     DVNVTLYQTNELLAKTNVLVEDVNGKVSTLDPLFVAVADLSTSVSDLNASARDLTVKA
                     KSAGASTVKAGGALSALSTLSSLLGKKGEKNGKKI"
     gene            complement(20935..21738)
                     /locus_tag="U1087_000386"
     CDS             complement(20935..21738)
                     /locus_tag="U1087_000386"
                     /EC_number="2.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HEM4754902.1"
                     /translation="MNTIEKRLNMNPIAVKLGPLEIRWYAICILLGLILGVYLATKEG
                     PRKKIRQDDILDFILIAFPLSIIGARIYYVAFSWSEYKDNILSIFAIWNGGIAIYGGL
                     ITGAIVLYFFTQYRFINTLDFLDIVAPSVMIAQAIGRWGNFFNQEAYGKAVESLNYLP
                     AFIRDQMYIDGAYRQPTFLFESLWNLLGFGLVCVLRRRPKFLKQGEITAFYLVWYGCG
                     RLLIEGLRTDSLMFLGIRVSQWLSGVLILVGINMVVLRRRKSSIPFYQP"
     gene            complement(21713..22645)
                     /locus_tag="U1087_000387"
     CDS             complement(21713..22645)
                     /locus_tag="U1087_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr kinase/phosphorylase"
                     /protein_id="HEM4754903.1"
                     /translation="MTVYVKDLVDNLRIECAYSTEELLQKQITTADITRPGLEMTGYF
                     DYYAPERIQLIGMKEWSYLMAMTAHNRYQVLSQMFQPETPVVIVARGLEIPEEMYKAA
                     KEKQIAICRSKTATSRLSGELSSYLDSRLAQRTSVHGVLMDIYGMGVLIQGDSGIGKS
                     ETGLELVKRGHRLVADDRVDVYAKDDVTLWGEPAEILRHLLEIRGVGIIDIMSLYGAS
                     AVKDSSEVQLAVYLENFETGKVFDRLGNSGDTIEIAGIAIPQIRIPVKTGRNISVVIE
                     AAAMNYRAKQMGFDATKIFEERLSNLIEHNREEA"
BASE COUNT         6572 a         5430 c         4384 g         6357 t
ORIGIN      
        1 ataacctcct gtttgtttcg tcacttacag tgtagtcctt ctgacctttt tttgcatatt
       61 gaatttaact aatgtcacta atataaatta ttttctctta tataaccttt tacatacctg
      121 ataaagaata ggtacagcaa tgatggtcgt aattgcagtg ccataggttc ctaaaatccg
      181 acccaaagca gctaaaaatg atgctgatgg cgttagtcca ccgactaaac tccccgtcaa
      241 tgtgtacttc aacaggttca agataatttt tgtgagggct gcaattatcc caaccaaaat
      301 aatattggtt aagcgatcat tttccttgag gaatttctcg taaaacaaat gcaaaatgaa
      361 gcagacgatg agcgattcta gaatggtaat ccaagcaacg gaagcatatc ccgacagtaa
      421 atcgaagatg cctagaccga gtgaggctgc cagcgctcct tttttggcac caaagatcaa
      481 tactcctact accaccagag cattgcctaa atggacaaat tgactcccaa aaggaatacg
      541 aataaagaag acaaccacac aaataagggc tgcaaatagg ctaatttctg ttaattgacg
      601 caattgattc tgtttcataa tttctccttt aatgtttgaa atgcctgctg taattctgct
      661 agaaaaggtt caaaggaaat cccaaatttc aagtctctat ccaaagcaag agtacgctct
      721 aaactcttat cgataaaatc taaagctaga gggatagctt gatggagatt gatttgttgg
      781 atggttgcta cagccaacaa ggtagataga atgtcacctg ttccaaagaa atttgctgga
      841 tattttttag acatataggt agttatttcc cctgtttcct gctgaaaata ggctacacct
      901 atttggctat catcaaagga aatccctgtc agtacaatat ctgcggatac ctgctctgct
      961 aaagcttcca gtaagtcctc aatagccact ctatcgtagc aagctcccaa ataatccctt
     1021 cctgtcaaaa aagctgcctc tgttacattg gggagaatga gcttggccga ctggatcaac
     1081 tctttcatgg catctacata ggtagatgtg aaacctgtat acaacttccc tccatccccc
     1141 atgaccggat caacaatcaa tggtgtctct gtttgtttcg catacatagc caattgactt
     1201 agttgctgag gatttctaca gtagccagac aagatgcctg ccaactccaa attcaagttc
     1261 ttccactgtt caaaataggc tcgattcaag tcagtcatat cttcaacgac aacatctgga
     1321 aaaccacccg tatgagaaga aagtagtacc gttggtaaaa gaatcgtttc tacctgacag
     1381 gttgctgcaa ttgggatgct agtggctagg gcaaccttgc ccacaccagg caaatcattt
     1441 gcaagcaata atcgctgaac cataacaacc tcctaaatta tttttcttaa acaaaattgt
     1501 aaagtatttt cacgagcttt tcaataactc ttatcagaaa ttgtatgggg acagatggct
     1561 gaaaccttat aatatcgggc tcaaattact gcataagaaa acagtaacaa cttcttgcta
     1621 ctgtcatcct atttcgatgt attgttgtca aaatctgctt aatttttctc cagaaaggca
     1681 atcagggtct gggcagaacg ttctcctgct tgaatgataa attcatcaaa ggtgatattg
     1741 gcatctcctt gagctgtgtc actcatggca cggataacca agaatggctt acctgtatta
     1801 acagctgctt gagcgatagc tgctccttcc atctctacgg caaggacttc tgggaaatga
     1861 gttttgattg tagcgattct ctcctgacct gcgataaaac tgtcacctgt cacaatcaga
     1921 cccacatgac taatcatttc ctgctctgct aaaacggttc ttagctgttc taacaagact
     1981 tggtcggctg gataatacaa ttcctgccct gccatttgcc cgtaagcata gccgaaagcc
     2041 gtcacatcca catcgtggta agccaattga ttcgctacaa ccacatcacc gatggcaata
     2101 ccttcggcaa cagctcctgc cgaacctgta ttgacaatga catcaaccga aaaacgatct
     2161 gccaaaacag ccacggacat agctgacata accttaccga tacctgactg aacaagaaca
     2221 acttcatgtt gaccgattcg tccctgatag taagttcgac ccaagacatc gatttcagtt
     2281 gcatcttgta gatgttcgac caaaatcttt aattcctgag gcatggctgc gataattcca
     2341 aatttcatct cttctcctaa ataaataata ctgcaatgat aaacattatc agtaagatga
     2401 tgacccaaaa aaggattttg tttaccttac tgcggaaagc ttctcgcttg atggtttcga
     2461 tacggcgact ttttactaca gtaggtttga ccgggattcg gatcgtttgt ccctcttcat
     2521 atccctgata atcttcttct agatatggat cgaatagagc atcatccatt gatatatcct
     2581 ggtttggacg atagtgtcca aactggctag attggtcgga atactgtttc tttttcgctt
     2641 tctctaaaat ttcatccgtc aacaagggct tgcccattgc tagtttccta ctttctcatg
     2701 agttgtaaat attggatagc catgatggtc tttgcatcac aaatatcgcc agtagccaac
     2761 aagttcaaag cctcttccaa ggttacctca tgtaattcga taacctcatc ttcatccatt
     2821 ggacgaggat tttcaacctt gataaggtta tctgctaaat aaaggcgaat tcgttcatta
     2881 caaaaaccga tggctgaata gaaatctgct agtaatgtca gtttgtcact ggtataacct
     2941 gtctcttctt ctaattcccg taaggcagca tcttctaacg tatcttcttc tcctaattcc
     3001 aactttcctg ccggaatctc ataaatggcg cgttcaatcg ctttccgata ctgtttgacc
     3061 aaaatcattt ttccctctgg cgtaacagct aaaatacaaa ctgctcccct atgaaatatt
     3121 aattcacgct tgctcatcgt accatctgag agttggacat catccacaac tacatcaaaa
     3181 atgtgccctt taaaaatttc tgtccgctca atggtttttt cttcaaaatt catatgatta
     3241 cctatttttg acttggatgg aacggaaaac gagtcgcata accttctttg ttttcttgac
     3301 gaccacgacc aataccgatg gcatccactg gaatgtcttt tgtaataaca gaacctgcag
     3361 ccaacaaggc gttgtcccca atagttactg gtgcgatgat ggttgagtta gagccaacaa
     3421 aagcattatc tccaacggtt gttttaaatt tatttttacc gtcgtagttg acagtgatgg
     3481 tgccagcacc aacgttaaca ttattgccaa tcgttgcatt tcctaggtag gtcaaatgac
     3541 cagacttcgt tccttgacca agtgtagagg ccttgatttc cacaaagttt ccaacgtgaa
     3601 catctttttt caagagactg cctggacgaa tatgggcgta tggtcctacc gtcacacctt
     3661 cttcaataac agattcttca atgtctgagt tgctgatgac gacatctgct gcaattttcg
     3721 catcacgtac acgagtacca ttggttaaaa cagtacgttc accaatcacc gtttgccctt
     3781 tcaagacaac attagcttcg ataacagctt ccgcaccaat ctcaacatca atatcaatat
     3841 aggtagcatc tgggttgata aatgtcacac cattgaccat gtgtttttca ttgattcgtt
     3901 tgcgcataac agcttctgca gtcgcaagag cgacgcgatc attgacaccc aaactttcat
     3961 caaaatcacg caagacataa gcaccaacct tctcgcctgc ctgacggaaa atcgaaataa
     4021 catctgtcag atagtactca ccttgggcat tgtccgtatt aatatcttta agcgcttcaa
     4081 aaagacgttt attatcaaac aagtaggtcc ctgtattgat ttctttcact tgtttttcaa
     4141 aatcgttggc atctttttgc tcaacaattt tttgcacttc cccatcagca ttgcgaataa
     4201 tccgaccata tccgaatggg ttatcagcct gagctgtcaa gatagtcgca acattcttgt
     4261 ggctgacatg gaagttaatg aggttcttca agctttctcc tgtaatcagc ggtgtatccc
     4321 ctgcgataac aagggtctga ccttccaaac ctgcaagagc tggctcagcc atcataacgg
     4381 cgtggcctgt ccccaactgt tcagattgaa gggcaaactc tgactgacct tcgagaactg
     4441 cttggaccaa ttctgccttg tgaccgacaa tggttactgt tttagcaggt tccatagcat
     4501 ctacagcccg tttgacatgc tccaacatgg taattcctgc cactttgtgt aagacctttg
     4561 gcaagtcaga cttcatgcga gttcccttac ccgccgctag gataattgca tagttattgc
     4621 tcatagtttt ctctcttttc aatgatatac tcctattata gcaaattttg atgtttttgg
     4681 aaaatagcag tattatagga aattttcgta aataaaaaga aactggaatg aagccagttt
     4741 ctcaaaaatt tctagtatta gaaaacaaac tacaggttga ttgcatccaa tagaattgtc
     4801 tatttaggat aaaccaattc aaattcttca cagacaacca gcatatcttc tgagaaggac
     4861 aggcctgctt ctgccagcca gatagtgaaa agctcttcat ggacctgccg ccagtgaatc
     4921 agacttttcg cttttatgtc agacaagtca cctccctgac ggaactcgcc ctccttatag
     4981 gcatgttctt ccgtcacttg ggaaaagggc gtcacataga ccttggtggt ctggataatg
     5041 cacacagcct gaccttgtcc gtccagaatg atgtcatagc caccagctct tggaatttct
     5101 tctccttcta ctgcatagag ggcatgggca gagctggttg aggttttgat gcccctagcc
     5161 accaaatcag ccagtcgatc agcttctgcc ccaaaggccc aggcttctgg ctcaggacct
     5221 gcttgggaat tgatggcaag aaattcttgc cagagttgtg ttggtgtcat ggtttttcct
     5281 ttctagaaat ttgccaattc ttcgcttgat caagtaaagc ctcaaatcca taagggattt
     5341 gatttagaag tgtttcggtt atcccaaact ggagtatctc aactaaagca attaattgaa
     5401 catctgcaat gtcatgaata tctccacaaa gaaattgcca catcccatct tccaagtcgt
     5461 gactgatgta ggttatcggt ttattctctt cacttatgtg tttacagatc actactgcta
     5521 catgaggatt atcatcaaag atcaacatca ctttcctccc tacttcaaac tccagccgcc
     5581 atcaatggta ataatctggc cttgcatgga agcgagttta ccagtagcca gcatgaaggt
     5641 cagctctgct atttcgctgg gctgactcca gcgtccgata ggggtctggt ctgccaccca
     5701 gttcgccagg ccaccaggct caaagtcctt ctgggtcatg cctgtctgaa cggcacctgg
     5761 ggcaatgccg aagacctgga ccttgttctt ggcatagtcc agtgccaact gcttggtaaa
     5821 acctgccaaa gcgtgcttgg aggcagtata ggctgagcct cctccacctg ctagactgga
     5881 ggcaatggag cacatattga taattatgcc agactgtctg tccaccattt gttgcagata
     5941 gggacgggtc agtctagtca ccgcaaaaaa attgaccgcg aagatgcgag ctaattcatc
     6001 ctcctcgata tccagatggg gacggtaatc gtctagaatg cctgcggtgt tacagaggac
     6061 atcgactgac tggcaccatg aaaagactgg ggttaaatcg cctgtcaggt ccagctgtag
     6121 aaagtggaaa tcgcctgcca aatcaggctt gctggcctga tcaatcccga agacacgcca
     6181 gccattttcc aaaaaaatcc ctgcctgtgc cagtccgatg ccgctggaaa cgccggtgat
     6241 gaggactgtc ttagtcatag acttctaccc agtcggtcgc aaggacatcg catggggtcg
     6301 ggctccacat ggagaagccc tcgccctcgc cggtcacgtt gatgaggaaa taaggcgtcg
     6361 cctccagctt ctgcccgtgg acctcgatgg tgtcaaagag ctggacgtag ttctccgccc
     6421 cgccccagcc tgtgcgaacg tactttttct tggccttcaa gcctggtaaa atttcttcaa
     6481 atgtcatttg aaactccctt attcttctat ctttcaatca ttataccaaa aaatcagact
     6541 actctaaaga gttgcctgat tgtatttcta ccccatattc tcctttttca ataggaaaaa
     6601 tgtgcctgca agcgttgaga aaaaggcaag aaccataaag agcagaggca accagcctgt
     6661 ccaatcctgc ggtccgtagc caaactgact ggccagcagc tgactaaagc cgctgagcac
     6721 cgttagcaca taggctggaa tcaaggtatc tacaattgct gacttactgc gatagtagaa
     6781 gagaccagct gcgactccta gaatcaccaa aagactggcc cacaagggca ggggaaggct
     6841 ctcataaaac tgacgactaa tccaaaaacg cagtccaact agccccacaa aactaagccc
     6901 ccacatcccc atcagcaaat agaacttgat ttttgaccgt tcatagacta ggttttttag
     6961 gatgaaaaat gcagagctgg gcagaataag ggcaaggagc aaatcgcaca gcaagccccg
     7021 ccattctagg accatctcac cagtcactcc aaacaaacct aagaaaaacc agctaatata
     7081 gaccaaggag atcaatcctg ttaaccgcaa accatagtac cagcgaatgg gcggtaggtc
     7141 agccaagagt tcatccgcca tctgcttact gtctttgcct aaaaaatcct ctgctgactg
     7201 accatctgct tgggcatcca agacatcttg gtatatagaa agcaagagtt cagtcgccct
     7261 ttcctcctgc tcatggaagg ctgatgccaa catcaagtaa gcatggagct tgcgcatata
     7321 gcgcttgttt tccttggtca acatcctctg taagctgcta atagcattca ttttttctgt
     7381 tgcttgttca tcttacttct cctttctcac caacaaaatc gcacttccaa tccaaaaggc
     7441 catagctggc agaatgacca aaaccagatt gagccaaact ggaacggtca tgaccatatt
     7501 caccacaccg ccaacaatca taaagagata ggtcggtaaa aagacatagc ggaccaactt
     7561 tcccttttgg aaaaatagca gagcgagacc gagcaaggtg agtggtacta gaagccccca
     7621 tccagtcaag actaggtcag gttccttggg gattgcccag agacgaagtc cgcaaatcag
     7681 gagaaaaaga agggggatgc agagaaagct tgcccagacc ttgattttgc tggtctggta
     7741 aatcagaccg cgaataacga ggaaaatccc tgcagggagg aagaaactga gagccgtgtc
     7801 acacaccaaa cccagccagt ttatggaaat ggtgcctgtc cctgcaaaat ccatcagcca
     7861 ttggctgccg aggtagatga tcagcatgag gccactcagg tttgcgactt ccatgaaacc
     7921 aatcggaggg aggtagctga gtaggtcgtc cgccatctgc ttgctatctt tgcccagaaa
     7981 atcctccgca gaaagcccat ctttttgagc ttcaagaaca tcttggtaaa tggataagag
     8041 ctgggcagtc actgcctctt cctgcctgtg aaaaacagag gcaatcatca tataaccatt
     8101 gatacggccc atgtattcct tgttttccct ggtcagctga gattcaatca cttcaatctg
     8161 cttgcggtat tccatttgtt tgctcatctt attctccttt caatcgctga accttttgga
     8221 ccaattccgt ccactgactc caaaaatctt ctagataagc ctttccctga tctgtcaaat
     8281 aaaaatactt cctgtctggt ccgtctggcg agggcttgtt ctgactaaaa atcaggctat
     8341 ttttctctaa cttctgaagg aggggataga ctgtccctcc gaccatgttt tcaaagccct
     8401 gatttctcaa ctcctgaacc aattcataac cataaatctc cttctggctg ataatttgta
     8461 atacacagcc atctaggacc cccttgagca tctgggtttc tttcataagt cctcctcttc
     8521 ctctacaaaa aagcaaaaca gtaggcctga tgccaacagg atgcctaaga tcaatattga
     8581 atccaaggcc cagcctgtta taatcgctgt cacaagcgtg atgcctgcta gtttccaatt
     8641 ttcgcgactt ttcttatcca gtttcatact gcctccccat ctagtttgta ataccaacta
     8701 gtctaataaa aataaaagtg attttctttg tcttctatca ctagtttgtt ttacctatta
     8761 gatttgtatc tatagtctaa cacaaggtag ctagtttgta aaacaaaata gtggaaaatg
     8821 agtaaaaaaa tcaacactac tactcaaagt tagtgtcaac atctcagcac agtgatagat
     8881 tgcttcaaca gtctggggag agactgttga aggtgggaaa taaaacaaac gcagtttgtg
     8941 tccaaacaat ctgggaaatt gttggaagtt ggaaataaaa agttacggta gcaacatatc
     9001 taaaaacgta taaaaaactt gggttgcccc aagtttagga aataatttgt ttgtaagacc
     9061 gtgtcgtgat ggcatagacc actaggtaga ggaggagata gccaccacag atgcctgcag
     9121 tcacctgcaa cataagccct gcattgacca caccaataga caacaagata gacgagagca
     9181 tcttgtaggc aaatgcaaga tggacaaagg caagtaggat aggcaggaaa aagacggtca
     9241 gcaattgctt gcgaatggac tgtctcgtct gatcctcatc cagaccaacc ttggtcataa
     9301 tgacgaagcg atctctgtct tcatagcctt ctgaaatctg tttgaagtaa atcaccagca
     9361 ccaccgccat caaaaagatg agtgatagca agagaccgat gaagaaaagt gaacctgcaa
     9421 aactgaagaa actacgcatc gcataggcac ggtaggcgag actgatggcg ttcgttccat
     9481 tcggtaatat attggactcc caaagctcac tttcaaaggt accggataag aagacctcct
     9541 ggctatttac ctgctcttct tccgacagac tgctttcaaa gcccatataa tagcgactcc
     9601 tagtttgctt ttcaaaaaca gttaagtcct gcaccacaat gaccaagtac tgacttagaa
     9661 ggaaggaacc atggtctggt agatgtccta aagtcacatt cttgggcaag acttggacaa
     9721 cttccatttc cttttcatca aaggtgaggg tttgaccagc ttgatactgg actcctttgc
     9781 taaaaattgc cacttggtca gatgccaact ggagtttttc tcccgtcatc ttttcatagc
     9841 tggcttgatc aaagacaaaa ccgatcccaa ctcggtcaga gaaattcata ccagcggctt
     9901 cttcatccgt caaaaatctt acttgctgat ttgtcacctc agaaaaatag gcttgctgat
     9961 aaggatagac taccttactt tcaacaggaa tatctgtctc ttctaagata gcttccgccc
    10021 actcctccca cttctccgtt tgagcttttg aagtggttgg ttgcattcca acatcaatag
    10081 aataatcatt tggattttga ttggcaatat aatctttgcc accgatgtaa atattgagtc
    10141 ctccaaccat ggtcaccaag aacatactgg agaggatggt aatggtcgca agccctagag
    10201 catttttccg catgcggaaa atcaagttgg atacagaaat aaaattctct ggcttgtagt
    10261 aataggtctg acgctgtttt agccagttta agagactgat gacacctgcg tggaagagca
    10321 ggtaggtccc aaagataacc agaagagttg ctccaaagaa acttggaata gcctgcatcg
    10381 gactggtcac tagttgagca atagcatagc ctgtgcccaa taagataaga gctaagaggg
    10441 tctgtagcca gagtaagcct gatttcttat ccccacgctt cttaccttga accagtttga
    10501 gtgagtcggt caagcccagt tttccaatat taaagaggct gaccaaggca aaaatcccaa
    10561 agagatagat aagtacagta accagacttt tcaactggaa ggttgaagcc aggaccacag
    10621 gcatctgcat ggctttcagc aagagcgcat agaagagttt atctagagcc agtcccaaga
    10681 gcaagcctgc tagaatggta ccgactgaaa agaccagatt ttctagaaaa gtcatcaaga
    10741 agagatgttt tttctccaga ccaagaatgc tataaacacc gaactctttt gaccgctgct
    10801 tcatgacaaa actattggca tagaagacca tgatggcaac ggccagcatg accacaatca
    10861 taccgaaacc cagcacttga atcactccat tggctccctt gacctgacct aaatcaggat
    10921 gaaaggcaag cgaggcaaaa atataggcaa tggctgtgga caaaatggtc atcagggcat
    10981 agggaaaata gagtctgcgg ttctttttga gattggtcag agccaatcga acggttagtc
    11041 caaacatact actcacctcg attcgccata agtgtcaagg tatctgaaat caactgatac
    11101 atttcctgac tggttctctc acctcggtag atttgattgt agaggatgcc atccttgata
    11161 aagagaaccc gtttggcacg actagctgct actgtcgagt gggttaccat cagaatcgtt
    11221 tgcccttctt ggttgatttt ttcaaaaata tcgagaagag ttgccgttga tttagagtcg
    11281 agggccccag tcggctcatc cgctaagagg atttctggct gggtgatgat ggcacgcgcc
    11341 accgcaactc gctgctgctg accacccgaa atctcgtagg gcatcttgtc ttgcaaggtc
    11401 gcaattccca ggctattaag cgtatgaaca agtcgcttgt tcatctcatc aatcggatag
    11461 cgagataaaa ccagaggcaa aagcacattg tccttgactg agagggtatc caagaggtta
    11521 aagtcctgaa agacaaagcc caatttctcc cgacgaaagg ctgccgcttc cttgctcttg
    11581 atagactggg tatccaatcc gttaagcaag accttgccct gcgttggctt atcaagggtt
    11641 gccaaaatat tgagcaaggt ggattttcca gaaccagact cacccataat ggcgacatat
    11701 tcaccctttt ccactgtaaa atgaatatcc ttcaaagcct caacctgtcc cgctttaaag
    11761 agagaactgt atatcttttg aacgtgttga acatctaaaa ctgacataac ttgactcctt
    11821 ttctttttct accttcattc tacacggtcc caagataaac taccatagcc ttagctttca
    11881 tttacgtgac agttttgtaa gattaatcaa aaatcaactc cacttctttg ataccgattc
    11941 gcacctctgt tccctgacct acttttgatt ttagctttag ggaatagccc agctccgcag
    12001 caattttccg tgagaggtag agccccagac ccgaagattg ctgggttctg cggccattga
    12061 aacctgagaa accacgctca aagacccgtt ccaagtcact ctcagcaatc ccaattcccg
    12121 tatcgcgaat gaccaactca tccccatcta gaaaaatcga aacgcttccc ccctgacaat
    12181 acttgagggc attggataaa atttgctcaa tcaagagacc cagccagcgt ttgtctgtct
    12241 ttactgtcct atccaactgc cccaagtcta agctggtatt ggcctgaatg aaaaagaggg
    12301 aatactttct tactagattt ctgatcagtt catccaaatt gactgattcg ataaccaaat
    12361 catcatgaaa ggactgtaaa cggagatagt tcaagaccaa gcctgtgtat tgttcgattt
    12421 taaagagttc tgtttctagc tgatgacgga ctggactact atctacttcc ttaaccaaga
    12481 gctgactggc tgcaatagac gttttcatct ggtgggccca gagggtgtag tagtcgtcta
    12541 attctgtctg ttcctgtcgc tgtttttcta ggatttgctt gttctggact tctagtcgct
    12601 ccactttttc ctgcaacaaa cgctcactag ctgtcccaat agccactttc tgaccacgcc
    12661 agatttttcc aaaacgagaa aattccctga aaaaatccca gaggagggcg aggagccagc
    12721 agatagtgag cagggtgagg gcgtagaaaa ccaagtttct ttggatgtca aagaggctac
    12781 tataagccag aatagccaca gcaaaaacgg cgtaggctat cagaaaaatc aagcgatgac
    12841 caagccatga ggtcaaaaat cctggtacta atgagccaaa atcatcctta ttcatgtgtc
    12901 cacaccaggc cgtagcctac tcctttcttg gtcgcaatca catctggcag atccagttct
    12961 gccaatttct tacgcaggcg agcgatatta accgacaaag tattgtcatc cacaaaaata
    13021 tcactgttcc agagttctct catcaactcc tcacggccga ccacttcctt gccatgttca
    13081 aataaaacgc gtaaaatctg aaattcattt cgcgtcagtt cttccacaac ctgtccataa
    13141 gacacctgca tggtctttag gtctagggaa atctcctcaa accagagtaa actttgttct
    13201 ccgacaaagt cataggttct tctgagaagc ccctgtattt tggccaggag aaccgtcatt
    13261 tcaaagggct tggtcacata gtcatccgcc cccatattga tcgccataac aatatccatt
    13321 ggctggtcat gggaagatag aaacataatg ggaacacggg atgtcttgcg aatttcctga
    13381 caccagtaat agccattgaa aaacggcagg ccaatatcca gtaaaatcaa atggggctga
    13441 aactcttcca tctgttccaa caccgtctga aaatccttga cctcttgcac ctggtaaccc
    13501 cagtttatca agtttttagc aactagttgc ctaatcgttt tatcatcctc gataagaaga
    13561 attttctgca taactatctc ctttcatatc gctactatta ttatagctta cattggaaca
    13621 aatttgagta tttttataca tttacacaag aagtagacta taaaaccagg tcatcagtgg
    13681 tgcagatttg tcagaccaag catatttcgt tatactagat aaaaaaggaa aggactgcta
    13741 tgccgaattt attaacctat attgaagaaa ctcaatacga taatttttat gataaaccta
    13801 tcaataagct agatattctg gctctgaccg aactttccta cctccctttt gataatctgg
    13861 tcccctactc ttttacagaa aatggtgtac gacttgattg gttggcagcg acctttgaag
    13921 agacctacaa aaataatttc cctccctttt ctatggtgac caaaaaccgc ctagccttac
    13981 taggacttct agccaaatct aaacgcttca aatctatcaa ggcatttggc ttcattgacg
    14041 attatcagtt ggaacaggaa aagcagtttt cagcaattag ttatcgcatt gaccgaaaaa
    14101 cgattgtgac ttgcttcaga gggacagatg atactattat cggttggaag gaagatttcc
    14161 acatgaccta tatggatgaa attcctgccc aacgtgcagc aagtggctac ttagaaaaac
    14221 ttatgatgca gcaggggggc catttttatc tggccggtca ttcgaaaggc ggaaatttag
    14281 ccctctatgc agcatgccag caagctacag accaacagga tagaattcta gctatctatc
    14341 cctttgattc acctggctta cacaaaaaac acttggaagc acctagttac caagctattc
    14401 accaacggat tttccctgtc attccccaga attcaatcgt cggtatgatg ttagaaacac
    14461 cagaaaatgc tcagattgtc cagagtaata ccctcagcat tctacaacac atcagttttt
    14521 cttgggaggt tgacggaagc gacttcaaac tagcccctgc cctgaccagc gatagcctac
    14581 aaacagacca agccttaaaa acttggacgg ctagtctaac agacgatgaa ttacgagact
    14641 tcttcgattt gtttttcggc atcttcatca aagcaggaat tgaacgtttt agcgacatca
    14701 cggtaaatcc cctacagaaa ttacaagaaa ttgaccgact aagaaaagaa atagctccag
    14761 aagaagccga aatggtggac aaactcattc ggctcctctt tgatacccgt tatcaaatct
    14821 ggagggacaa tattagcact tccattccaa gccctgaaat ctctctacca gattggcgga
    14881 aacttttcca aagaaataca actgaaaata aagaaaacta gctcaaccac ctgagctagt
    14941 tttctttatc aaatcttctt aaaaactggg atagtttttc taatcctttg attagagttt
    15001 cttgttcaca ggcaaaacct agacggacat agccgtcacg ttcaaaccga ttaccaggaa
    15061 ctaggagaac accgtattct tgcaagagtt gcaagcaaaa atcttccata ggcatatcca
    15121 ctgcaatttt tacaaagctg gtagaaacaa ccgctggacg gatataggaa acgaggggtt
    15181 ctccctcaat ccattggtcc aaaatagcta aattttcttc taaaatgcgc cgatttcgtt
    15241 ctagaatttc ttgataatgg gctaaagcta attgagccac cagatcgtca aagacacctg
    15301 cacaaatcat ggtgtagtcc cgataatctc tcagaatgtc cgtcacttga tgattggctg
    15361 ccacccaacc cacgcgaata cctggcagag aataggtctt ggataagcta tttacagcaa
    15421 ttcctttatc atagacttct ataatagatg gcacatccag tccagaaaag gaacgataga
    15481 cttcatctga taggatgtaa gcaccaactt cactagcaat ttccgccaat tcttccaaat
    15541 aagccctatc catgacagca ccagttggat tattggcatt attgatgcaa atcatcttgg
    15601 tattgggacg aatgagctga cgcagttttt ccaagtctgg caaccagcca tgctcttcct
    15661 caatctgcca caaatccact tctgctccca aagactttgg aatatcgtag agttgttggt
    15721 aggtcggata aagggaaatg acatggtctc ctggctcaat caaaccataa agaactaaca
    15781 agtttgcccc tgttgcccca ttggtctgga gaatttgttc tggcttgacg cctgtataga
    15841 gttgactaac tgatttttta aatgctggcg aaccttctat ccagccatag ttgagcttgg
    15901 tgccctgcaa tttcttataa aaatcctcag gattggtgcc cgacaaggca aacaattctt
    15961 ccaaagtcaa tgaagaaatg gacacccctg ctatatcata aatcgcgcta ttttcatgga
    16021 cattcagcca ttcctcaacg ccaaaacgtg gtaatttcat aagacttcct acttttattt
    16081 atcctgctct tattgtacca tattctttca acaattgtat aaatatgcga tacatcataa
    16141 aaggaatatt tttacaaagg aatattttta caattgaaaa agcaggcttt ctcaaacgag
    16201 actgcctgct ctgctttttt cccttagaac ttccctagat tcgtcaaatc ttttttctct
    16261 ggcatgactt ccttgttgtc ccagtgctcg acaatcttac cgtctttgag gcggtagatg
    16321 tcaaagtggg cgtagtcctg acctgcaatc cagactttcg agtaagccac cacatagtca
    16381 ccctgtccta tcaccttgaa gacaaagtcg tagtcaacag ccttatcgac cagatagtcc
    16441 ttataagctg caccgccttg ggcgatttcc tggttgtgct gaatcaggtc cgctgccaca
    16501 taattgtcaa acttctcgat ttccccattt tgaaggacat cgaccaagaa acgacggacg
    16561 attttcttgt tgtcctcagt cttatctagg tcagtcagct caaagtctgc gtaaatcggg
    16621 tctgtttggc caatggtttt tggataggca tcaatgacat cccaatgctc gacgatacga
    16681 ccattttcat ctgaacggaa aatgtccgcc gtcacccact cagcttcacc gtcattgagt
    16741 ttctggtgga catggacgaa gacaaagttt ccgtcttcaa tggcacgaac aatggtgatt
    16801 tctcgcttgg gattgcgttt gaaaaagtcc tcaaagaaag tcgcaaagcc ctctttctca
    16861 tcaggcacac ccgtactatg ctgggtgtaa gtagcaccca tgtagtgctc atgaacttcc
    16921 ttgatttcgc catcacgaat gccacgaagg tacagatttt tagcgttttc tagttgatgt
    16981 gacatagtat tttctcctat tttaacaatc cttcttgttc taaatattcc ctcgccactt
    17041 gctctgccga cttgccttcc acatcgaccg catagttcat ctgggtcatt tcctcggtcg
    17101 agattttgcc tgccaagacc cctaggactt gctccaactc gggatatttc tctaaggttt
    17161 ctttggacaa tagcggagcg gcctggtaag gtgggaagag ctgcttgtcg tcttctagga
    17221 ttttcaattt gtaagtgact accttgctgt ctgtagaata tgcttcgata atctgcacat
    17281 taccactctt aatagcttcg tagcgaaggg caggctccat ggtcttgaca ttgagttgga
    17341 gattgtagag attttttaga ccgatattac catcttcgcg gtcgttaaac tctaatgaga
    17401 agcctgcgac agctgtctgc tgcacttttg ccaaatccga aatcttttca atgccatgat
    17461 cttgagcata gtcttctgtc acagccaaag cataggtatt ctggaaagcc attggtgcta
    17521 aatacatcag accatcctgt tccaaaatcg cttctttagc gtaggtataa acctcctcag
    17581 gattcgttga taaatccatt ggtgaatttt tcaaaagagt acttgtgatg gtccctgtgt
    17641 actcaggata aatatcaata gaacctgatt tgagtgcctc ataaaggaag ctagtctttc
    17701 cgaaattagg ttttatctcc accttgatgt ctgtctggtc ctcaatcagc aacttataca
    17761 tattgatgag aatttcaggt tctgcaccga gcttccctgc aatgaccaac tgttttgtgg
    17821 aaaagttaag catgggaaca taactagctc caacagtaaa taaagtcacc aatagagcta
    17881 ataaaattgt cttgggtttc ttgtcctgca acagacgaat gccataacca aaaagtactg
    17941 caaggatagc cgacgatacc gcaccaatca aaatcagggc tgaatcattg cggtcaattc
    18001 caagtagaat aaaggatcct aggcccccag ctcccaccaa ggctgccaga gtcgccgttc
    18061 cgataatcat aatggaagcc gtccgaatcc ctgacatcaa aataggcatg gcaagggcta
    18121 acttaaattt tttcaacttc tcccatttat tcataccaaa agcggttgct gcttcttcca
    18181 gagaagggtc gatttctcca agtcctgtca atgtcccctg caagatagga aagatagcat
    18241 aaataacaag tgctactact gctggcaagg ttccgattcc cataaaagga atgaaaagac
    18301 caagcaaagc aagggatgga atagtttgga agatacctgt tatttgcaga ctccactcgg
    18361 tcaagcgttt tttactagat agaatcagtc ccaaaggtac tgcaattgca atcgcaataa
    18421 tcaaagctag aagggagatg cgaaggtgtt caaaaagagc gattccccac tcgtccttgc
    18481 gttctataaa ggtttcaaat aggttcatta catacctcct cgagctctga taaattcctt
    18541 gacaaaatca ttggcaggat aattcctcaa ttcatcagga cttcctaatt gcacaacttg
    18601 tccatcttgc atgagacaga tgcgatccgc caatttaacc gcctcatcca tatcatgggt
    18661 aacgaaaacc gttgtcatct tgaattcctc atgtaactcc ttaatcaagt cctgcaactg
    18721 agccttactg attgggtcca gagctgagaa aggttcgtcc atgagtaaca ctttcggatt
    18781 ggcaatgatg gcccgcaaaa tcccgattcg ctgtttttct cctccagaca agtccttggg
    18841 caaacgatcc agatagctgt ctggttccaa gccaaccttg gtcaagagct ctctcgtcct
    18901 cgtcaaggtt tcttccttac ccagaccttt catttcagga ataagagcaa tgttttcagc
    18961 taccgtcata tttggaaaaa gggctatctg ctgaagaaca taacctgtct ccaaacgtaa
    19021 ttcacgcagg tcgaaatcct taagtcgctt accttgaaaa aaaacctctc cctcggtctg
    19081 ctcaattaga cggttaatca atttcaacgt agttgtcttt ccgctaccac tcggtccaat
    19141 caagacaaag aactcccctt cttgaatatc aaaggtcaaa tttttcaaga ttggtccgct
    19201 aaccttacag gtcagagata cattttgata atcaatcatc atcttctcct tttaaaatag
    19261 ccatgagact ctgactgtag cgctgaatta atcctagcat aagctcctgt tcctcctgac
    19321 tgagttgaga cagcgcctta ttttccgcct cctctaaggg atccaaaatg cgactagcaa
    19381 attgttgccc ctcctctgtc aatttaattt tcttatgtcg cttatctgct ggattctcct
    19441 ctaaaactac cagttctcta tccaaaaatt tctttacagt agcattgaca acttgtttgc
    19501 ttgaataggt cttcttactg acccagtttt gcgtcacacc tccgggatta taataaatcc
    19561 acatgagaat ggataaacat tttgcattga gcccatgccg gcgagcgtag ccctcataga
    19621 gcccgacttg ctggtcaaac atacgagcgt aatccttact tcttttccta acttctggca
    19681 tcgttcccct ccctattaag cacaatcacc ttgccaaaag cctctggtct actagtgttc
    19741 aaaacaacaa caattttcac aacgacttcc tcctgtaatc atgttagtca atatttttta
    19801 ctattttacc aaaaaaagaa aaatagtcaa tcattttgac tattttgaaa catcaactac
    19861 cttattatag attcccgtct tcatccactc aaacatatta aatccctgaa attatctgct
    19921 tttaatttac acaaaacaaa tgataatcag acaacaaaac tagcctagaa aattctaagc
    19981 tagtttcatt ttatccttca actgtttctg aggcagtttc gcttgctact tctgaaacag
    20041 tttctgatac cacttcagtt tgaacatctt cgatatcaat ttcaatatct tcagacacaa
    20101 ctacagcatc ctcaatatct tcttctgtca aatccactgt cggagtttta gcagtttttg
    20161 ccttgatagc ttccaaaatg tcagccgttg acaagttttg ttccgcaatt ttttccttga
    20221 tttgctcaaa ggtttccaag gatttttcct taccagactt gaccaaatct tctactgtca
    20281 attcaccagt ttcaagttga gtttttactt cggtaaatcg ttcagtcgct tgtttgccta
    20341 aatcttgtgc cttagtgaca aaatcagcat tgatttcttc atggttttct ttatagtcat
    20401 tagcaaagtt tacaactttt tctttgactg ttttaccagt cttacttgct agaaaagcag
    20461 ctgcagcagc tccgcctgct gcccctaaca aaaggctagt ccacacgcta ctagattttt
    20521 ttaccatttt tttctccttt cttacctaag agagatgaga gagttgacag agctgaaaga
    20581 gctccgccag cttttacagt acttgctcca gcagacttgg ctttgactgt caaatcacgc
    20641 gctgaagcat tcaaatcaga tacagaagtt gacaagtcag ctactgctac aaaaagagga
    20701 tcaagggttg aaaccttgcc atttacatct tcgactaaaa cattggtttt agccaaaagc
    20761 tcgttggtct gatagagagt cacattgaca tcgctggtca agaccttaag cgtttgctgg
    20821 gcttcatccg ttaccgtacc caattttttc aacaacaaaa caatatatac tgccaccgcc
    20881 gcgatggaca aggcaataat caagacagaa atttcaataa tcatatcttc tcctttaggg
    20941 ttgatagaat ggaatagaag actttcttct ccgcaacaca accatgttaa taccaacgag
    21001 gattaacacc ccagatagcc attgtgaaac acgtattccc aagaacatga ggctgtccgt
    21061 ccgcaagcct tctatcaaaa ggcgaccaca accataccag actaggtaga aagccgttat
    21121 ttctccctgt ttaaggaatt tgggccgtct acgtaacaca caaaccaagc caaagcctag
    21181 caaattccag agagactcaa acaagaaggt tggttgacgg taggcaccat caatatacat
    21241 ctggtctcgg ataaaggctg gcaggtagtt caaactttct actgccttac cataggcctc
    21301 ttggttaaag aaatttcccc aacgaccgat tgcttgagca atcatgaccg atggcgctac
    21361 aatatccaaa aaatccaggg tattaataaa gcgatactgg gtaaagaaat aaaggacaat
    21421 cgcacctgta atcaaaccac catagatggc aataccaccg ttccagatag cgaagataga
    21481 taaaatgtta tccttatatt cactccatga aaaggcgacg tagtaaatcc gtgcccctat
    21541 gatagaaagc ggaaatgcga ttagaataaa atctaaaata tcatcctgac gaattttctt
    21601 tcgcggaccc tcttttgtcg ccagataaac acctagaatc agaccaagca aaatgcagat
    21661 tgcataccaa cgaatttcta agggacctaa tttaaccgca ataggattca tattaagcct
    21721 cttctctatt gtgttcaatt agattagaca agcgttcttc gaaaatcttc gttgcatcaa
    21781 accccatctg tttggcacgg tagttcatgg ctgctgcttc aattacgaca gaaatatttc
    21841 gaccggtttt tacaggaata cgtatttgtg gaatagcaat tcctgctatt tcgatagtat
    21901 cgccagagtt tcccaaacgg tcaaatacct tacctgtttc aaaattttca agatagacag
    21961 ctaattgtac ttctgatgaa tctttcacgg cactagcacc gtatagactc atgatgtcga
    22021 taatgccgac tcctcgaatc tctaataagt ggcgcagaat ttccgcaggt tcaccccaga
    22081 gagtaacatc gtcttttgca tagacatcaa cacggtcatc agccaccaat cggtgtcctc
    22141 gtttaaccaa ctcaagacca gtctcactct taccgatacc agaatcaccc tgaataagca
    22201 cacccatacc gtaaatgtcc atcaagacac cgtgtacact cgtccgctga gccaggcgac
    22261 tatccaagta agaagacaat tctcccgata gacgactggt tgctgtcttg cttcggcaga
    22321 tagcaatttg tttttctttt gcagccttgt acatctcctc agggatttcc aagccacgtg
    22381 ccactatgac aacaggggtt tctggctgga acatctgaga aagaacctga tagcggttat
    22441 gggcagtcat ggccatcaaa taagaccact ccttcatccc tatcaactgg atgcgctctg
    22501 gagcatagta atcaaaatag ccagtcattt ccaatcctgg tcgggtaata tctgccgtcg
    22561 taatttgctt ttgcaggagc tcttccgtac tgtaagcaca ttcaatccgc agattatcga
    22621 ccaaatcttt cacataaacg gtcatttctt ccctcacttt cagttttatt atattatacc
    22681 ataagctagg ggttggggga aaaacaagtg gctgatttgg taaaaagaat gagtttcttt
    22741 ctt
//
LOCUS       DASFRC010000013        22682 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.013, whole genome shotgun sequence.
ACCESSION   DASFRC010000013 DASFRC010000000
VERSION     DASFRC010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 22682)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22682)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22682
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.013"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..252)
                     /locus_tag="U1087_000388"
     CDS             complement(<1..252)
                     /locus_tag="U1087_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754904.1"
                     /translation="MRKKLIATIAFCVVCLFLYSFVPQSFGTPTIFQTPYKTSVKSEF
                     EALFHKHGIDVSENDFWATSLNGRTPQDILNEKAKLLYIK"
     gene            complement(467..3406)
                     /locus_tag="U1087_000389"
     CDS             complement(467..3406)
                     /locus_tag="U1087_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HEM4754905.1"
                     /translation="MNKKIFLNSAIILLSVTCFTGSVDALDNSRVIAIPSEIVNSENA
                     YNITLKAKTDGVESDLGGSIVSENGVLSGSNGTKINLKITTNPGYRFVGYQSFLENGN
                     STDGLLPIENDSFEISDKTGNVTVIAIFESVPVDESIYFSDDFSVENINNYVISENLV
                     GKIGISDGKMNLHAPGISSIKPILTKPIEDNATSGYEIGFTLQQIGEVKPWNTFRIVF
                     KEDHDGFIYALEFSGQAAFLKKLSSIDAPLQSGEKYAETSHILGSEEHKVRLVVKGNS
                     VTVSDNGIPLLSYNSPNNWNDAQASIVFSPVSNRSVSLDDIIVRRTQTLRPFRVVSRL
                     DGQEVSGVLPGSIKGTTSQVFVGDSLNLEVIEKSGYQFIGFKDSAGNFLDLTTFVVPN
                     EESELVLYADFESVDVVIREPKTFYIDSLGGNDSNNGETENSAWKSFEQLRKKSFVAG
                     DRILIKRGSRFVGESAFLTFKGSGSQNTPILISSYGEGELPLLEGQGKIENVIKLYNQ
                     EFITIENLEITNLDPNFSTSFELNSNNNRTKSLRGLHVVAEDYGVVHDINIRNLYIHD
                     INGNLSSKWNGGIFFDVYGTTIPTKYDGILIENNYLERVDRSGIKLVGSTWANQNLKN
                     NKNVPLNWYPSTNVVVRGNRIEKAGGDSLTVRDTDGALIEYNISADARYQNTGYNAGI
                     WPFQASNTVIQYNESFRTHGVQDGQGLDLDHISNNSVMQYNYSHDNEGGFMLIMNWYE
                     QTSPTVRYNISQNDKDKIFELARGGAQGTAIYNNTIYSDSKLTGRAGVIDMPSTSGGT
                     GVKDIFLFNNIFYFVDGEKMLVEASDAGKYKDNIHFYNNAYVGVEVPNDPRAITEGIE
                     LNGIGTGPIDNKSMIANTGKYLTGQLDGYKIPFNSVLANSGVSKEDAITYFYEKLGIQ
                     QQIDFIENGSLNMSPIEAFSLARQTNSIDAIARSYPKIDGVNYDIDFFGESILTDNLS
                     IGAAQVK"
     gene            complement(3526..5412)
                     /locus_tag="U1087_000390"
     CDS             complement(3526..5412)
                     /locus_tag="U1087_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000236922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4838 domain-containing protein"
                     /protein_id="HEM4754906.1"
                     /translation="MKLTIFDKVQNKTSQFAIDELTYYLKAIFDFELGRTTVEEDANI
                     LLSKEYFDNNDTIGIEMKNGNAILSGNSDISILIAVYRLLSEFGAVFTRPGRKHELIP
                     SLSISDWNEKELSIHETASYKHRGVCIEGADSYQNIKEFLDWLPKINMNSFFIQFENP
                     YSFLKRWYEHEFNPYADKEDFNTEIAQQMSDLLDEELSKRGLIHHRVGHGWTGEVLGY
                     SSKYGWESGLILPEEKKPLVAELNGKRELFNTAPILTSLCFSNPDVGERMCELIVNYA
                     KERKDVDYLHVWLSDARNNICECEKCKEEIPSDQYVRILNQLDRKLSEEGLNTKICFL
                     LYHELLFAPKHEVLENPERFTMMFAPITRTFEMSYADVDYENNVPLPNEYTRNNIVLP
                     NSLEENLSYLFSWQKVFNGDSFVYDYPLGRAHYGDLGYMKISKVIFRDVVYLKKLGLN
                     GYISCQELRAGFPHNFPNFVMGQMLWNRNLEYDELKALYFSSLYGSEWKSVVTYLEKL
                     SDYSSCDYFNSIGDRQNAELSMKYNISSKLAFNFINILEENVAKNYGIKRDAWRQLGY
                     HREYVIKLANALYLMASGDYLDGQIQWRDFLDYIRNHESDFQPYLDVYRIIEVAKNYA
                     GFKL"
     gene            complement(5417..6745)
                     /locus_tag="U1087_000391"
     CDS             complement(5417..6745)
                     /locus_tag="U1087_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM4754907.1"
                     /translation="MNRLMHFLEHKLAPFGTKVGNQRHLKAVRDGFMMAMPLVLVGSF
                     FLLLISWPDQASGGFSVVGFLEQIGLLGILNRLNQSTMAIISLIATFGIAYRLSESYE
                     TDGPSAGVIALSSFILLAPRFSTIVFNESGEQINQVFAGAIPFGSLNASALFVAIAIG
                     LVSAEIYRFFIQRGITIKMPKNVPDVVGKSFAALLPALTTLIFWACVFQGLEAAGVEG
                     GLGAVLGLIVGKPLGLIAGSLGGMVLVVLVNSLFWFTGVNGGQVLNAFVDPVWLQFTE
                     ANQVAAAAGEKLPHIITLPFKDLFVFMGGGGATVGLAICLLVFSKSRTFKSLGRISFI
                     PSLFNINTAILFSFPTVLNPIMMIPFILTPTVNAIITYFAMATGLVPMTTGVVLPWTM
                     PPILGGFLATGGSVQGAILQIILIGVSFIIYYPFFKVADNKNLELEASGE"
     gene            6937..8136
                     /locus_tag="U1087_000392"
     CDS             6937..8136
                     /locus_tag="U1087_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEM4754908.1"
                     /translation="MGKKEETIRNISGNILKTLFRHQKSSRTRISKSLKITPATITNM
                     ISYLVAENKVIETGDEVRDYIGSGRSRRLITVNSQYRHYIGIEINANGIYLAVTDTIG
                     NLIKNSNIKITEYDSKKINEIIIQLVTETLEKFSYLEFGALGIAVPGHFDSKSGHIIS
                     NNVKWIYFDLAVIKESISIPIFLENNINCMAIGAYLFHPESSPEQFLFIHIGPGLFCS
                     FFDSEHILQNKNFYIGEIGHTVVDLNGPSCECGKRGCLQTYISDTWLINNARFLFENV
                     QGSIIKTLVEKPEDITLDVVYNAYRLGDGFIIEKIESGIDFLATSIANTLVIYDSKKI
                     FINSQLLNYPGFSEKVNNLVDNQLQFIPSKNNLDIKFLSFNIFRGAIGAASLAVYNHF
                     ILENNSN"
     gene            complement(8419..9057)
                     /locus_tag="U1087_000393"
     CDS             complement(8419..9057)
                     /locus_tag="U1087_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HEM4754909.1"
                     /translation="MRWGIVVEQLTVLYQNLKRRYGEFHWWNDENPIKDLVSMILIQQ
                     TTEANAKRALEQLEGRLTIHSLLEMPVEDLQECIRPAGFFKQKSLYIRSVVEWANQFD
                     GDFSRLDRVETAVLRKELLSLKGVGNETADVILLYLCRRSIFVADQYALRLFNRLGLS
                     QSQDYLSLRQEFTEQIKDWSVKDAQELHALIDEHGKQFRLTKGQLDESWLMI"
     gene            complement(9105..10025)
                     /locus_tag="U1087_000394"
                     /pseudo
     CDS             complement(9105..10025)
                     /locus_tag="U1087_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922588.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-6-phosphate kinase"
     gene            complement(10127..10753)
                     /locus_tag="U1087_000395"
     CDS             complement(10127..10753)
                     /locus_tag="U1087_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEM4754910.1"
                     /translation="MKIAIIAANGQAGQTIAKEAVERGHQVTAIVRSENKSVAQEVIQ
                     KDAFALTKEDLAGFDVVVNAFGAWTPETLPDHARLAEHLATILAGSPTRLLVVGGAGS
                     LYLDESQTAMLKDTPDFPAEYLPIAEAMGTGLDLYRQATAVNWTYISPAADFDAEGQK
                     SGAYTLAGEVFQVNAQGESYISYADYAVALVDIAEKGGYQQERISVLA"
     gene            complement(10992..11411)
                     /locus_tag="U1087_000396"
     CDS             complement(10992..11411)
                     /locus_tag="U1087_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEM4754911.1"
                     /translation="MQISSRFTTASHILVLLALEGEKEKQTSTSIAGSVGVNPVIIRN
                     ILSQLKEAGLVEVARGVGGARLAQGPDQITLLHVYQAVELFGEKGQLFAFHEQPNPSC
                     QVGRNIHPLLDSRLENAQSALENELAKTRLADLLAEL"
     gene            complement(11454..12521)
                     /gene="dinB"
                     /locus_tag="U1087_000397"
     CDS             complement(11454..12521)
                     /gene="dinB"
                     /locus_tag="U1087_000397"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HEM4754912.1"
                     /translation="MLIFPLINDLSRKIIHVDMDAFFAAIEVRDNPALKGKPVIIGAD
                     PRLSGGRGVVSTCNYEARAFGIHSAMSSKEAYECCPQAIFISGNYEKYQEVGRQVREI
                     FHRYTDLVEPMSIDEAYLDVTENKLGISSAVKIAKLIQYDIWNELHLTASAGVSYNKF
                     LAKIASDMEKPYGLTLILPEDAVGILASLPVEKFHGVGKKTVERLHEMGVYTGQDLLD
                     VPEMVLIDRFGRFGFDLYRKARGISNSPVKVDRVRKSIGKERTYRKLLYREEDVLKEL
                     ISLCQRVAASLKRNGKKGRTIVLKVRYGDFSTLTKRHSLEVYTDQTETIEKEVRQLIE
                     EIGKIEKGIRLLGVTVTNFQT"
     gene            12836..15181
                     /gene="pflB"
                     /locus_tag="U1087_000398"
     CDS             12836..15181
                     /gene="pflB"
                     /locus_tag="U1087_000398"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HEM4754913.1"
                     /translation="MSTKVKTKNVAEDIFAQAWEGFKGTDWQDKASVTRFVQANYTPY
                     DGDESFLAGPTERSLHIKKIIEETKAGYEDTRFPMDVDRATSIADIPAGFIDKENELI
                     FGIQNDELFKLNFMPRGGIRMAETTLIENGYTPDPLLHEIYTKHATTVNDGIFRAYTA
                     DIRRSRHSHHVSGLPDAYSRGRIIGMYARLALYGADYLMEEKVADWNAITEIDEESIR
                     LREEINMQYQALQQVVRLGDHYGVDVRKPAMNTKEAIQWTNIAFMAVCRVINGAATSL
                     GRVPIVLDIYAERDLARGTFTESEIQEFVDDFVLKLRTVKFARTKAFDEIYSGDPTFL
                     TTSMAGMGNDGRHRVTKMDYRFLNTLDNIGNSPEPNLTVLWSDQLPYSFRRYCMAMSH
                     KHSSIQYEGVTTMAKDGYGEMSCISCCVSPLDPESEDQRHNIQYFGARVNVLKALLSS
                     WNNGYDDVHKDYKVFDGVEPNTSEIFDYDQVIANFEKALDWLTDTYVDAMNIIHYMTD
                     KYNYEAVQMAFLPTHLRANMGFGICGFANTVDSLSAIKYAQVKPIRDEDGFIYDYEVT
                     GDFPRYGEDDDRVDDIAKWLMEAFFSRLNKHKLYKNAEATVSILTITSNVAYSKQTAN
                     SPVHRGVFLNEDGSVNTSKVEFFPPGANPTSKSRGGWLQNLNTLSKLNFKHANDGISL
                     TTQVSPKALGKTFDEQVNNLVTILDGYFEQGGQHVNLNVMDLNDVYDKIMAGEDVIVR
                     ISGYCVNTKYLTKEQKTELTQRVFHEVLSMDDHAAEVSGQA"
     gene            complement(15422..18391)
                     /locus_tag="U1087_000399"
     CDS             complement(15422..18391)
                     /locus_tag="U1087_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HEM4754914.1"
                     /translation="MAHFDLTERYDFQQWIITDLETENGFTHRPQSKYNQRLAMDTDI
                     LWEFLRATQEDEMDYLLKKLDKEVILNLINQEIIKGGLLFALKSGVYIENKQLKLVYP
                     KPATSFNAKAVKRYEQNRFTVMEEVVYKDQERVDLVIFLNGLALFAIELKLNSSGQSV
                     DDAICQLKKRDSKNRLFKFNAGVLASFAVDTLEVYMTTEIKGQDTYFLPFNMGNGEGV
                     NQGAGNPHNESSPDTAYFWKEVLAKDSILQLIERFIFLKVDKDNKNKKTLIFPRYQQR
                     RAVNRVLEDMKVNHTDSNYLIQHSAGSGKTNTIAWLAHSLVSLHDHEDRNVVDAVLIV
                     TDRIVVDRQLQDAVQAIQHQPGVIKVMDDKATSSDLADALAGNTKIIATTIHKFAQIN
                     KSDWMTAGPTAQKRFAILIDEAHSSTTGSYMSAVSQVLTETDVEDGTIDEVQEVSVAD
                     AIEQEIARTGKQDNISIIAFTATPKATTLQLFGKTLPDGSKGPFDVYSMKQAIQEGFI
                     LDVLNNYTTYKTYYKLNKAVEEDPQFKTGLAKRKIAKFIELSDENIDQKVEIIMDHFI
                     SHDIMAELGGQGKAMIVTSGREAAVKYQKSFKRYFKEHHITSIGALVAFSGKVSMEDQ
                     DYTETLMNGIAEDKLKERFDTDDYQVLIVANKYQTGFDQPKLVAMYVDKKLRDVAAVQ
                     TLSRLNRTVGGYNKKTFVLDFKNTYEDINKAFAPYYKETILSETITPSDVFDLVRKID
                     EYGILDSDVIHEFNQFLYQERRSSRDKQKMTALLNKGCSRVREFDAKEQLEIKKVFRG
                     FLRMYTFLIQATAYQNEVLHERYNYLQELVKMIDVRLGGTDFTIADKIVVDYMKHKQT
                     GVHTVADLEGEYTLSLNKPKIGSIDEEQEKRLSEIIDEINEQLDLTIDPQIGVSGAVS
                     IRELMKKNEKLKQSAKVNSREDFEFSFEDEIDNALTEGYMQNQDFFGVLLNNDAFKKR
                     IAKLFIDDVYRSLKDDE"
     gene            complement(18417..19322)
                     /locus_tag="U1087_000400"
     CDS             complement(18417..19322)
                     /locus_tag="U1087_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003001102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HEM4754915.1"
                     /translation="MYMSVKQAAELWGISDRRVRDLCSQGKVEGAIREGRLWKIPKDT
                     PKPVDGRYKRVESLLPLIDEKMARLATLRPLTRGEIERLNEEFTVEFTYNSNAIEGNT
                     LTLRETDMVLRGLTIDQKPLKDHLEAIGHREAFEYVQTLVAEDTPLTEQVVKDIHYLV
                     LSDKKDDRGVYRKVPVRIMGAANEPAQPFMIRPLMEQWLADYAQCQENIVTKMARFHI
                     AFESIHPFIDGNGRTGRLLVNLELMKAGSPPIDIKVSDRLANYQAFDDFYAKGSLSAM
                     EDLFARYLNERLDMYLSILSLDDVE"
     gene            19675..19761
                     /locus_tag="U1087_000401"
     CDS             19675..19761
                     /locus_tag="U1087_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003049409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative holin-like toxin"
                     /protein_id="HEM4754916.1"
                     /translation="MQLMLGFGSFLLSLIGLVIVIVKMSNKK"
     gene            complement(19999..22647)
                     /locus_tag="U1087_000402"
     CDS             complement(19999..22647)
                     /locus_tag="U1087_000402"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754917.1"
                     /translation="MFERIIAKVDEEIQQVLEIPDSGAILMDLLLEIAQYQLQNKSNS
                     ISKTDFLRLNFWSNYGISKKPFFISNLVKSGLVIDYLFTDKEVYSFGYNLLEDYLKAK
                     VIMELYSNNEAIREYSEKELLKIEKGEIQNGYNIDTFLFVCCFCFQKFGEDCINLIEK
                     VTDEYDCYDLANRYIKSFSWRPADTLSRELFESIVHHYPTDIDLVLRVLIENCTKEKS
                     PLNAEFLHEILFTKKLNERDGFWLPLINQLTYEDERVYQLISLYDNGDRVNELSKEKT
                     KLLLTLFTWLLASSNRKLRDVTSKAMIEILKYDFELSEFLLRKFEDVNDPYIIQRLYG
                     VIFGASTKKVNLFDNEFQSLAEYVYLNVFDKESIYPDILLRDYARLIIERYLFEFPDK
                     ETKINYSKIVPPYKSEPIPVVPIETYRNFESGSKIDGFDRIDSSMRPEGVGIYGDFGR
                     YTFQSALAQFENIDIENLYHYAMQFIRDELGYTSNKDLSEYDMGMRRPLDRSGGQSAE
                     RIGKKYQWIAFYNILARISDTHNLRKWDDEDTGFKGPWNPYVRDFDPTLNHHTLSPLH
                     ILPKFSIDYELEFLEQESNNNEEIDEWINQKPSLFNMPLHYKDDNGIEWVLLHQHKEL
                     KYIPEENEGNLFGYIEGEQRIWRIVEAYFIANSEFAGFIQNIQENKFLRNNLSGGAPS
                     YYQFYNREYAWSSSVIEAYNIQYDYYVESGKQRTERQKKTDFKLSGDRFEFVEIEEDV
                     VVNIKKKIAKLQPARIHFLWEEEYDLSKEKTVSFDIPSTTIVSKLNLTQKEHDGYYYD
                     GNNLVVFDGELTGVINGLIIRKDYLDRFLKENELSIIWDFVGEKQYFTQTPREQYYSR
                     WEGIFWKDKDSMSSQIYLDEQRTVKD"
BASE COUNT         7090 a         4816 c         3637 g         7139 t
ORIGIN      
        1 ttttatatat agtaattttg ctttttcatt tagaatgtct tgaggtgttc gaccatttaa
       61 tgatgtagcc caaaaatcat tttctgagac atcaatacca tgtttatgaa ataatgcttc
      121 aaattcggat ttcacagagg ttttataagg tgtctgaaaa atagttggag taccgaaaga
      181 ttgaggaaca aatgaataga gaaatagaca aactacgcaa aatgcaatcg tggctatcaa
      241 tttttttctc atattgttac ctccttatcc aaataattta tttatctcaa ttattattaa
      301 tatcatatct gaaatattta ttatgtaaat ttatattaca atttattgag aatcagactg
      361 taattttgat tttcacttta aaaattctta gactaagttt cttcattgtg ttttaacgaa
      421 aaaaatcatt ctatttgact taatgaaaaa taactagctg tttcactcat ttaacttgag
      481 cagcacctat agataaattg tctgttaaaa tcgattctcc aaagaagtca atatcatagt
      541 taactccatc aatttttgga tatgagcgag cgattgcatc tatactattc gtttgacgag
      601 ctaaagaaaa ggcttctatt ggggacatat ttaacgaccc attttcaata aaatcaattt
      661 gttgctgaat ccctaatttt tcatagaaat aagtaattgc atcttctttt gatacgccac
      721 tatttgccaa tacactgttg aaaggaattt tatacccgtc taattgacca gttaaatatt
      781 tcccggtatt tgcgatcatt gatttattat caattggtcc cgtaccaata ccatttaatt
      841 ctatcccttc agtgattgct ctaggatcat taggcacctc gacaccaaca taggcattat
      901 tataaaaatg aatattatct ttatatttac ctgcatcact tgcttcaaca agcattttct
      961 caccatctac aaagtaaaaa atattattaa ataaaaagat atcttttact cctgttccac
     1021 ctgacgtact tggcatatca attacacctg ctcgtccagt taatttcgaa tcagagtaga
     1081 ttgtattatt gtaaattgca gttccttgtg ctcctcctct agccaattca aaaattttgt
     1141 ctttatcatt ctggctgata ttataacgaa ctgtaggaga tgtttgttcg taccagttca
     1201 tgattaacat aaacccacct tcattatcat gactgtagtt atattgcatc actgaattat
     1261 tagaaatatg atctaaatct aaaccctgac catcttgaac accatgcgtt ctaaatgatt
     1321 cattgtattg aataactgta ttcgaagctt ggaaaggcca tatacctgca ttgtacccag
     1381 tgttttggta tctagcatca gcagaaatat tgtattcaat caatgcacca tcagtatctc
     1441 taacagttag agaatcacca cctgccttct caatacgatt tcctctaaca actacatttg
     1501 tagatggata ccaatttaac ggaacatttt tattattttt caaattttgg tttgcccatg
     1561 ttgatccaac taattttatt cccgacctat cgaccctttc tagataatta ttttctatta
     1621 atataccatc gtatttggta ggtatagttg taccataaac atcaaagaaa attcctccat
     1681 tccatttcga acttaaatta ccatttatgt catgtatata tagatttcga atatttatat
     1741 catgaacgac cccataatcc tcagcgacca catgtagtcc acgaagtgat tttgtacgat
     1801 tattattaga attcaattca aaacttgtag aaaaatttgg atccaaattt gtaatctcaa
     1861 gattttcaat tgtaataaac tcttgattat acaacttaat tacattttca attttccctt
     1921 gcccttctaa taaaggtaac tcaccttcac cataggatga aattagaatt ggagtatttt
     1981 gactacccga acctttaaat gtaagaaaag cactttctcc aacaaaccga cttccacgtt
     2041 ttattaatat tctatctcca gctacaaacg actttttcct taattgttca aatgatttcc
     2101 atgcactatt ttcggtttcc ccgttattag aatcatttcc tcctagacta tcaatgtaga
     2161 aagtctttgg ttcacgaatc actacatcca ctgactcaaa atcggcatac agcactaact
     2221 ctgactcctc atttggaaca acgaaagtag ttaaatcaag aaaattacca gcactatctt
     2281 taaaaccaat aaattggtac ccagattttt caatgacctc taaattaagt gaatctccaa
     2341 caaaaacttg acttgtggtt cctttaattg aaccaggcag aactccagat acctcctgac
     2401 catctaatcg agaaacgacc cggaaaggtc ttaaggtttg agttcttcga acaataatat
     2461 catctagaga aacactccga tttgaaactg gtgaaaaaac aatagatgct tgggcatcat
     2521 tccaattgtt tgggctgttg taacttaata atggtattcc attatcacta actgttactg
     2581 aattaccttt gactacaagt cgtactttat gctcttcact tcctaaaata tgacttgttt
     2641 cagcatattt ttcgccagat tgaagtggtg catctatact agaaagtttt tttaaaaaag
     2701 cagcttgtcc tgaaaattct aaagcataaa tgaacccatc atgatcttct ttaaatacta
     2761 ttctaaaagt attccatggc tttacttcac caatttgttg taatgtaaac ccaatttcat
     2821 atccagaagt tgcattatct tcgattggtt ttgttaaaat tggtttgatc gaagagatac
     2881 ctggagcgtg aagattcatt ttcccatcac taattccaat ttttcctacc aggttttcag
     2941 atatcacata attattaata ttttcaactg aaaaatcatc actaaaatat attgattcat
     3001 caactggaac tgactcaaat attgctatta cggtcacatt gcctgtttta tctgaaattt
     3061 caaaactatc attttcgata ggtagcaatc catccgtact atttccattt tctaaaaatg
     3121 attgataacc tacaaatcga taaccaggat ttgtggttat cttcaaattt attttagtac
     3181 cattagaacc tgataagaca ccattttcag aaacaatact tcctccaaga tcactttcaa
     3241 ctccatcagt tttcgctttt aaagtaatgt tgtatgcgtt ttcgctgttt acgatttcgc
     3301 ttggtatcgc tatcactcta ctattatcta aagcatcaac agaaccagta aaacaagtaa
     3361 cagagagtaa tataatcgct gagtttaaaa aaattttttt attcatgtaa ccctctcaaa
     3421 aaataacatc aaatattttt atttatcctt ctaataatag acatcaagcc aattcactta
     3481 aaaataaata gtgaattggc tatttttcta atctaatcca taggactaca atttgaatcc
     3541 agcataattt ttagcaactt caatgatacg gtaaacatca agatatggtt gaaaatctga
     3601 ttcatgattt ctaatataat ctaaaaagtc tctccattgg atttggccat cgagatagtc
     3661 tccagaggcc attagataaa gggcgttggc caatttgata acatattctc ggtgataacc
     3721 taattgtcgc caagcatcac gtttaattcc gtaattttta gccacattct cttccaagat
     3781 atttataaaa ttaaatgcta atttacttga gatattgtat ttcattgata attcagcatt
     3841 ttggcgatca cctattgaat taaaataatc acatgaagag taatctgata atttttctaa
     3901 gtacgttaca acacttttcc attcagaacc atataaggaa ctgaaataga gcgctttcaa
     3961 ttcatcgtac tctaaatttc tgttccacaa catttgaccc atcacaaagt tagggaagtt
     4021 atgagggaaa cctgcgcgta actcttggca actaatataa ccatttaaac ccaatttttt
     4081 aagatatacg acatctctaa agattacttt actgatcttc atatatccta aatcaccata
     4141 atgtgcccga ccaagtgggt aatcatagac aaaactatct ccattaaaca ctttttgcca
     4201 actaaataaa tatgagagat tttcttcaag tgagttagga agaacaatat tatttcttgt
     4261 atactcattt ggaagtggga cattgttttc atagtctaca tcagcataac tcatttcgaa
     4321 agttctggta ataggcgcaa acatcattgt gaaacgttca ggattctcta aaacttcatg
     4381 ctttggtgca aaaagcaatt catgataaag taaaaaacaa atctttgtat taagcccctc
     4441 ttcacttaat ttccgatcta attgattcaa aattcgtaca tactgatctg agggtatttc
     4501 ttctttacat ttttcacatt cacaaatatt gttccgtgca tcggataacc aaacatgtaa
     4561 gtagtctaca tctttccttt cctttgcata gtttacaatt agttcacaca ttctttcacc
     4621 aacatctgga tttgagaaac atagactagt tagtattggc gctgtattaa ataactcacg
     4681 ttttccattt aattcagcga ctaggggttt cttttcttca ggtagtatta acccagattc
     4741 ccatccgtac ttagatgaat atccaagtac ttcaccagtc caaccatgtc caacacgatg
     4801 atgtattaaa cctcgttttg ataattcttc atctaaaagg tcgctcattt gttgtgcaat
     4861 ttccgtattg aaatcttctt tatccgcata cggattaaat tcatgttcat accagcgctt
     4921 taaaaatgaa tacggattct caaactgaat aaaaaagcta ttcatattaa tttttggtaa
     4981 ccaatccaaa aattctttta tattctggta actatctgca ccttctatac atactcctcg
     5041 atgtttataa ctggcagtct cgtgaataga gagctctttc tcattccagt cagatatcga
     5101 taacgaggga attagttcat gttttctacc tggtctagtg aatacagctc caaattcact
     5161 aagtaagcga tataccgcaa taagaataga gatatcagaa ttacctgata atatcgcatt
     5221 tccattcttc atctcaatcc caatcgtatc attattgtca aaatattctt ttgagagtag
     5281 aatatttgca tcttcctcaa cagttgtcct tcctaactca aaatcaaaaa tggctttcaa
     5341 gtaatatgta agttcatcta tagcaaattg agaagtttta ttctgtactt tatcaaaaat
     5401 cgttaatttc atatgatcac tctcctgatg cttcaagctc taaattctta ttatcggcca
     5461 ctttgaaaaa tggataataa ataatgaatg agactcctat taaaataatt tgtaaaattg
     5521 ctccttgaac actaccgcca gtagcaagga acccaccaag aattggaggc attgtccaag
     5581 gaagaacaac ccctgttgtc atcggaacta atccagttgc catagcgaaa taggtaatta
     5641 ttgcatttac tgttggcgtg agaataaaag gaatcatcat aataggattc aaaacggttg
     5701 gaaaactgaa cagaatagca gtattaatat taaagagaga aggaataaag gagattcgtc
     5761 ctaaactctt aaatgtacga cttttactaa agacaagtaa gcaaatcgct aatcctactg
     5821 tagcgccacc accgcccata aatacgaaca aatctttgaa tggcaaagta ataatatgtg
     5881 gtaatttttc tcccgcagct gctgcaactt gatttgcttc tgtgaactgt aaccaaaccg
     5941 gatcaacaaa agcatttaac acttgtccac cattaacgcc agtaaaccag aaaagtgaat
     6001 ttacaagcac aacaagcacc attccaccta gacttcctgc aataagtcct agtggtttac
     6061 ctacaattaa tcctaaaacc gctccaagtc caccttcaac accggcagct tctaatccct
     6121 ggaagacgca cgcccagaaa atcaatgttg ttaatgctgg aagcaatgca gcaaacgact
     6181 tacccacaac gtcagggaca ttttttggca ttttaattgt aatacctctt tgaataaaga
     6241 agcgataaat ttcagctgaa actaatccaa tagcaatagc aacaaataat gcacttgcgt
     6301 tcaaacttcc aaatggtatt gctccagcaa atacttgatt aatttgttca ccagattcgt
     6361 tgaaaactat tgttgagaat cttggtgcaa gtaaaataaa agaagataag gcaataacac
     6421 ctgcagaagg tccatctgtc tcatatgatt cggataatcg atatgcaata ccgaatgtag
     6481 ctatgagaga gatgatcgcc attgttgatt gatttaaccg atttaaaatt cccaacaaac
     6541 caatttgctc taaaaagcct actactgaaa atcccccaga agcctgatcc ggccaactga
     6601 ttagcaacag gaagaacgag ccaactaata caagaggcat agccatcata aaaccgtcac
     6661 gaactgcttt caaatgacgt tgatttccta ccttagttcc aaaaggagca agtttatgtt
     6721 caagaaaatg cattaatcta ttcattttct tatcctccat taattttatt ttgtaaaata
     6781 aagatatcat gtaagcgctt aattgtcaag tttttattta tatttttaat taaaaaacaa
     6841 aattcgttta tacattcagt atttttactt cattttttat aaaaaatatg ttattcttac
     6901 attgaaaaat actattttcc aatgtgaggt actaaaatgg gaaagaaaga agaaaccatt
     6961 agaaatattt ctggaaatat attaaaaact ttatttagac atcaaaaaag ctctagaaca
     7021 agaatatcta aatctttaaa aattactccg gcaactatta cgaatatgat tagttatctt
     7081 gtagctgaaa ataaagttat tgagactggc gatgaggttc gagattatat tggatcaggt
     7141 cgtagtagac gacttattac agtaaattct caatatagac attatattgg aatagagatt
     7201 aatgccaatg gaatctattt agcagtcaca gacactattg gaaacctaat caaaaacagc
     7261 aatataaaaa ttacagaata tgattccaaa aaaataaatg aaataataat ccaattagta
     7321 accgaaactc tagaaaagtt ttcctatctt gaatttggag ctctcggtat tgctgtacca
     7381 ggccactttg attcaaaatc aggacatatt atttcaaata atgtaaagtg gatttatttt
     7441 gatcttgccg taattaaaga aagtatttca attcctattt ttctagagaa caatattaat
     7501 tgcatggcaa ttggtgcata tctttttcat cccgaaagtt cgccagagca gtttttattt
     7561 attcatattg gacctggatt gttctgttca ttttttgata gcgaacatat tttacaaaac
     7621 aaaaactttt atattggaga gattggtcat acagtagttg atttaaacgg accttcttgt
     7681 gaatgtggaa aacgcggatg ccttcaaact tatatttctg atacttggtt aattaataat
     7741 gcaagatttt tatttgaaaa tgttcaaggt tctatcataa aaactttggt tgaaaaacca
     7801 gaagatatta cattagatgt tgtatacaat gcatacagac taggagatgg ttttattatt
     7861 gaaaaaattg aatcagggat tgatttttta gccacttcaa tcgcaaatac attggttatt
     7921 tatgattcaa aaaaaatttt cattaatagc cagttattaa attatccagg tttttcagaa
     7981 aaagttaata atcttgttga caatcaattg caatttattc caagtaaaaa taatttagat
     8041 attaaattct tatcttttaa tatatttcga ggtgcaattg gagcagcatc cttagcagtc
     8101 tataatcatt ttatcttgga aaataactcc aattaatata aaaaaagagc aaccaactga
     8161 accgctggtt ttactctttt atagtcgttt cgtttgcttt tagtacaagg caacgatatg
     8221 caggctactt caactgtcca gtggagtgtt taaactcgga aataaggaaa tgagacttcc
     8281 tcgcccttca gtaataaaaa atacactaat tgatactcaa tgaaaatcaa aatcaagcta
     8341 ggcgacgcaa atgcagatag aactgaggtt catcaaatca tgtcaacaac gtctgatttt
     8401 gattttcgaa gagtatgact atatcatcaa ccatgattca tcaagctgcc cctttgttaa
     8461 cctgaactgc ttgccatgtt catcaatcag tgcatgaagc tcctgagcgt cttttaccga
     8521 ccaatctttt atctgctctg taaattcctg tctcaaactc aaataatcct gagactggct
     8581 aagtcctaaa cgattaaata gccgaagagc atattgatcc gccacaaaaa tacttcttcg
     8641 acacaaatag agcaaaataa catccgcagt ttcattgcca acccccttca agctcagcag
     8701 ctcttttcga agtactgctg tctcaacacg atctaggcga gaaaaatctc catcgaactg
     8761 attggcccac tcaaccactg accgaatgta gagtgatttt tgcttgaaga atcctgctgg
     8821 gcgaatgcat tcttgtaaat cctccacagg catctctaaa agcgaatgaa ttgtcaaccg
     8881 tccctccaac tgttctaaag cacgcttggc atttgcttcc gttgtttgct gaataagaat
     8941 catagatacc aaatccttta taggattttc atcattccac cagtgaaatt caccatatcg
     9001 ccgttttaaa ttttggtaaa gaaccgtcaa ctgttccact actatccccc atctcacctt
     9061 gtttctcctt gccattatag cacgatgagt aaagggatac aatactacag ttcctctagt
     9121 actattgtat ctacaatcgc ttcaaactgc tctgcttcaa cctctggaaa ataattcaaa
     9181 caattggctg ttgcaaaggc tgccgcttct ttcaaaaaga tttctggggc ttgaccttga
     9241 ctgattcctt tgactagcaa gcccaggtag aaatcccctg cggcaatagg attacgcgtt
     9301 tctttctttg gagactaaat acggaagaag cgctgaccaa tcttagctag actccccttg
     9361 tctcccatgg taatgatgat attctcatga ggagtcactt ctttcaggat acctaaaata
     9421 gcttcaggac tttcttcatc cagctctgga taaatatctt tcagctcttc attattgatt
     9481 ttgataaggg ccggtctagc ttgataagcc gcacgtaaag ctggtccact ggtgtccact
     9541 atggtcagaa cttctgggta tttttcaata aaccgctgaa tataatcatc cgacatcccc
     9601 ttcatcagac tacctgaaaa gactaggatg tcgccagctt gcaggctatt ttcaatctgc
     9661 tgagtgaatt ggttgagcaa atcctctgtt agttcaaaac ctttttcata aaatagtact
     9721 acatcgcctg tactggtttc aacatagata ttacatgtcc gagtattctg gctattttca
     9781 accacgcgca gggcatttcc accatcagca ttaagctcct gaatatagcg accaatctgc
     9841 ccacctaaaa tggtatggat agtgtagtct gtcactccat tttctcgaag tgcataggct
     9901 acgttgaaac tttttccacc aggataatcc ctcacttccg tcggtctcag gggaatattc
     9961 ttttcaatct tttccacaag aagcgtgcgg tctagggctg gattgggaca aatcaagtga
    10021 atcatggggt tctccttttc tttttattta tattattata ctatatgcaa gtaaaaaata
    10081 aaaagataat tcctcgatgg agctatcttt tagaccattt aattttttat gcaagtacgg
    10141 aaattcgttc ctgctggtag ccaccttttt ccgcaatgtc aaccaaagcc acagcatagt
    10201 cggcataact aatatagctt tcaccttggg cattgacttg gaaaacctcg ccagccaaag
    10261 tgtaggcacc tgatttttga ccttctgcat caaaatctgc tgctgggctg atataggtcc
    10321 agttgaccgc tgtcgcctga cgatagaggt ctagaccagt acccatagcc tcagcgattg
    10381 gcaggtattc cgcagggaaa tctggtgtat ctttcagcat agctgtctgg ctctcgtcta
    10441 aataaagact gcctgcacca ccaactacta aaagacgagt tggactacca gcaagtatgg
    10501 tcgctagatg ctcagcaaga cgagcgtgat ccggcaaggt ttctggtgtc caagcaccaa
    10561 aagcattaac tactacatca aagcctgcca aatcttcttt ggtaagagca aaagcatcct
    10621 tctggattac ttcttgggct acgctcttgt tttcagaacg gacaatagcc gtcacctgat
    10681 gaccacgttc tactgcttcc tttgcaatag tttgacctgc ttgaccattc gctgcaataa
    10741 tagcaatttt catattgata cctcacttgt ttcgttgtaa caacttcgtt tacaacgtaa
    10801 gtataaatta ttttggttgt aacgtcaatt gttacagctt gaaaattaaa aaaatcatca
    10861 caaggatgat tcactaacta gtcttttagt gctagggcaa cactctacag actacttcaa
    10921 cagtccagtg gagtgtttga agtaggaaat agggaaacaa agtttctcct tacgttgacc
    10981 taataaaacg actatagttc cgccaagaga tcagcaagcc ttgtcttagc aagttcattt
    11041 tccaaagccg actgagcatt ttccaaacgg ctatctagca gaggatgaat attgcgacct
    11101 acttggcagg aaggattcgg ttgctcatga aaagcgaata attgaccttt ttctccaaat
    11161 aactccacag cctgatagac atgcaaaagt gtaatctggt ctggaccctg tgccaagcga
    11221 gcacccccaa caccacgcgc tacttctacc agaccagcct ccttgagttg ggacaaaata
    11281 tttcggataa tgacaggatt aaccccgaca ctgcctgcaa tgctagtact ggtctgtttt
    11341 tctttttctc cttccagagc caagagaacc aagatatggc tggcagtggt aaatctactt
    11401 gaaatttgca tctcttctcc tttttttcag tctatcatag actgaaacag aactcaagtt
    11461 tgaaaattag tcacggtcac acccagcaaa cgaatccctt tttcaatctt cccaatttct
    11521 tcaattagtt gacgaacctc tttctcaatc gtttccgttt ggtccgtata cacctctaga
    11581 ctatgacgtt tcgtcaaggt agaaaaatca ccataacgta cctttaaaac aattgttcgc
    11641 cccttttttc catttcgctt caaactggct gcgacccgtt ggcagagact gattagctct
    11701 ttcaggacat cctcctcccg ataaagaagt ttgcgatagg ttctttcctt tccaattgac
    11761 ttacgaacac ggtccacttt aacgggcgaa tttgaaatcc ccctcgcttt ccgataaagg
    11821 tcgaagccaa aacggccaaa tctatctatc aaaaccattt ctggtacatc tagtaaatct
    11881 tgccccgtgt agacccccat ctcatgcagg cgttccaccg tcttcttccc cacaccgtga
    11941 aatttttcaa caggcaggga ggcgagaata ccaacagcat cttcaggtag aatcaaggtc
    12001 aaaccgtacg gtttttccat atcagatgca atttttgcca aaaatttatt ataggaaacg
    12061 cctgcggaag ctgtcagatg caattcattc caaatatcgt attggataag cttggcaatc
    12121 ttaaccgcag agctgatgcc caacttattt tctgttacat ccaagtaagc ctcatcaata
    12181 gacatgggct ccaccaaatc agtatagcga tgaaaaattt ctcgaacctg tcgcccaact
    12241 tcctgatatt tttcataatt gccagaaatg aaaatcgcct gaggacaaca ctcataggcc
    12301 tcttttgagg acatagccga gtgaatccca aaggcacgcg cctcataatt acaggtagat
    12361 accactcctc taccgccaga tagtcttggg tcagccccaa tgataacagg tttgcccttc
    12421 aaagcgggat tatccctgac ctcaatggca gcaaaaaaag catccatatc tacatgaata
    12481 atttttctag ataaatcatt gattaaggga aaaattaaca tgactgcctc ttcctgttta
    12541 caagtttgac tcgctatatt ataccgcatt tcttaggaag tttcagcctt tagattcgtt
    12601 gaaccagcca tcttatcaat acaataaacg acagcttatc accttattac aaatacaagc
    12661 agaaatttat tttgaaaata ccaactctat ctttcaattt tttcatattc cttgaaaggt
    12721 ttttcattta ttttcaagta tttttgtctt gtagaaagtg ttttcaaatg gtataataat
    12781 gacatgttgg tatcgatagc aagtcgatac ccaaaagcat aaaaggagaa ccctcatgtc
    12841 aacaaaagtt aaaacaaaaa atgttgctga agacattttc gcccaagcct gggaaggctt
    12901 taaaggtaca gattggcaag ataaggcaag tgtaacacgc ttcgttcaag ccaactacac
    12961 tccatacgat ggagatgaaa gcttcctcgc aggcccaact gagcgttcac ttcatatcaa
    13021 aaaaatcatc gaagaaacaa aagctggcta cgaagacact cgcttcccaa tggacgtaga
    13081 tcgtgctact tctatcgctg atattccagc aggtttcatc gataaagaga acgaactcat
    13141 cttcggtatc caaaacgatg agctcttcaa actcaatttc atgccacgtg gtggtattcg
    13201 tatggctgaa acaactctta tcgaaaacgg ctatactcca gacccactcc ttcatgaaat
    13261 ctatacaaaa cacgctacaa ctgtaaatga cggtatcttc cgtgcctaca cagctgacat
    13321 ccgccgttct cgccactcac accacgtttc tggtcttcca gatgcatact cacgtggtcg
    13381 tatcatcggt atgtacgctc gtttggcact ttacggtgca gactacttga tggaagaaaa
    13441 agtagctgac tggaatgcga ttactgaaat cgacgaagaa tcaatccgtc ttcgcgaaga
    13501 aatcaacatg cagtaccaag cattgcaaca agttgtacgc ttaggtgatc actatggtgt
    13561 tgatgttcgc aaacctgcaa tgaacactaa agaagctatc caatggacaa acattgcttt
    13621 catggctgta tgtcgtgtta tcaacggtgc agcaacttct cttggtcgtg tgccgatcgt
    13681 tcttgacatc tatgcagagc gtgacttagc tcgtggtaca tttactgaat ctgaaatcca
    13741 agaatttgtt gatgacttcg tattgaaact tcgtacagtg aaattcgctc gtacaaaagc
    13801 cttcgacgaa atctactctg gtgacccaac attcttgaca acatctatgg caggtatggg
    13861 taacgatggt cgtcaccgtg ttactaagat ggactaccgt ttcttgaaca cacttgacaa
    13921 catcggtaac tctccagaac caaacttaac agttctttgg tcagaccaac ttccatattc
    13981 attccgtcgc tactgtatgg caatgagcca caaacactct tctatccaat acgaaggtgt
    14041 gacaacaatg gcgaaagatg gttatggcga aatgtcatgt atctcttgct gtgtatctcc
    14101 acttgatcca gaaagcgaag accaacgcca caacattcag tacttcggtg ctcgtgttaa
    14161 cgttcttaaa gctcttcttt caagctggaa caacggctac gacgatgttc acaaagatta
    14221 caaagtgttc gatggtgttg aaccaaatac ttctgaaatc tttgactacg atcaagttat
    14281 tgccaacttt gaaaaagccc tcgactggtt gactgataca tatgtagacg cgatgaacat
    14341 catccactac atgactgaca agtacaacta tgaagcagtt caaatggcct tcttgccaac
    14401 tcaccttcgt gcaaacatgg gcttcggtat ctgtggcttc gcaaatactg ttgactcctt
    14461 gtctgctatc aagtacgcac aagtgaaacc aatccgtgac gaagatggct tcatctacga
    14521 ttacgaagta actggcgact tcccacgtta tggtgaggat gacgaccgtg tagatgacat
    14581 tgcgaaatgg ctcatggaag cattcttctc tcgcttgaac aagcacaaat tgtacaagaa
    14641 tgctgaggca actgtgtcta tcttgacaat cacttcaaac gttgcttact ctaaacaaac
    14701 agctaactca ccagttcacc gcggtgtatt cctcaacgaa gatggttctg ttaacacttc
    14761 taaagtagaa ttcttcccac caggtgccaa cccaacttct aaatctcgtg gtggttggtt
    14821 gcaaaacttg aacactcttt ctaaactcaa cttcaaacat gccaacgacg gtatctcatt
    14881 gacaactcag gtttcaccaa aagctcttgg taagaccttc gatgagcaag tgaacaactt
    14941 ggtgacaatc cttgacggat acttcgagca aggtggtcaa cacgtcaact tgaacgttat
    15001 ggacttgaac gatgtttatg acaagattat ggcaggtgaa gatgttatcg ttcgtatctc
    15061 tggatactgc gtaaacacta aatacctcac taaagagcaa aaaactgaat tgactcaacg
    15121 tgtcttccac gaagttcttt caatggatga ccacgctgct gaagtttcag gtcaagctta
    15181 atcaagcaaa cacaaaagga cttgcacatg caggtccttt tactatgtcg aaaaaatcct
    15241 cccacacatt gtggaaggat ggggagagaa ctgaaggata ctagcagcat cccacaagag
    15301 actaagctca agtccagtct ccacattaat tgatgtctgg aaatagactg ttacaactca
    15361 acaacttgaa acaagaattt gctgagaaac tcttttatct tatcgaattc tttttcactc
    15421 cctattcatc atctttcaaa cttctataaa catcgtctat aaaaagcttg gcaattcgtt
    15481 tcttgaaagc atcattattg agcaagacac caaagaaatc ttgattttgc atataaccct
    15541 cagttaaagc attgtcaatc tcatcttcaa aagaaaactc gaaatcttca cgagaattta
    15601 ccttagcaga ctgcttgagt ttctcatttt tcttcatgag ttcacgaata gaaactgcac
    15661 cgctaacacc gatttgagga tcaatcgtca aatcaagttg ctcattgatt tcatcaataa
    15721 tctctgaaag acgtttttcc tgttcttcat caatagatcc gattttaggt ttattaagcg
    15781 aaagagtata ttctccttcc aagtccgcta cggtatggac acctgtttgc ttgtgcttca
    15841 tgtagtcaac cacaatctta tccgcaatgg taaaatccgt cccaccaagc cgaacatcaa
    15901 tcatcttcac caattcttgt agataattat aacgctcatg cagaacctca ttttgatagg
    15961 cagtagcttg aatcaggaaa gtatacattc gaagaaaacc tcggaaaact tttttgattt
    16021 ccaactgctc cttcgcatca aactcccgaa cacgactgca acctttattc aacaacgctg
    16081 tcatcttctg cttatcccga ctagaacgtc tctcttgata aaggaattga ttaaactcat
    16141 ggataacatc actgtcaaga ataccatatt cgtctatctt acgcaccaag tcaaatacat
    16201 cacttggcgt aatagtttct gataaaatcg tttccttata gtaaggagca aaagccttgt
    16261 ttatatcctc ataggtattt ttaaagtcta gtacaaaagt tttcttattg tagcctccca
    16321 ccgtacgatt gaggcgagat agagtttgta cagctgctac atctcgcaac tttttatcta
    16381 catacatagc caccaatttc ggttggtcaa aacctgtctg gtatttattg gccacaatca
    16441 agacctgata atcatctgta tcaaatctct ctttaagctt gtcttccgca attccgttca
    16501 tcagagtctc agtataatcc tgatcctcca tactcacctt acctgaaaaa gcaactaaag
    16561 ctccaatact ggtgatatga tgctctttga aataacgttt aaaggacttt tgatacttga
    16621 ctgctgcttc acgacccgat gtaacaatca tagctttacc ttgaccgccc aactcagcca
    16681 taatgtcatg actgatgaaa tggtccatga tgatttcaac tttctggtca atattttcat
    16741 ccgataactc gataaacttg gcaatctttc tcttggcaag acctgtctta aactgaggat
    16801 cctcctcaac agccttgttc aatttgtaat aagtcttgta agtagtatag ttattcaaga
    16861 catccagaat aaagccttcc tggatagcct gtttcataga gtagacatca aaaggacctt
    16921 ttgaaccatc tggtaaggtt tttccaaaca actggagggt tgtcgcttta ggcgtagctg
    16981 taaaagcgat gatcgaaatg ttgtcttgct ttcctgtccg agcaatttct tgttcaatgg
    17041 cgtccgccac tgaaacctcc tgcacctcat caatcgtccc gtcctccaca tctgtttctg
    17101 tcaaaacttg actgacagca ctcatatagg agcccgtcgt cgaactgtgg gcttcatcaa
    17161 tcagaatggc aaatcttttc tgggcagttg gaccagctgt catccaatct gacttattga
    17221 tttgggcaaa tttatgaatg gttgttgcga taatcttggt atttccagcc aaggcatccg
    17281 ccaagtcact ggaagtcgcc ttgtcatcca tcaccttgat aaccccaggc tgatgctgga
    17341 tagcctgaac agcatcctgt agctgcctgt ccacaacaat cctgtctgtc acaatcaaga
    17401 ccgcatccac aacatttcgg tcttcgtggt catgcagact taccaaacta tgcgccaacc
    17461 aagcaatcgt attggtcttg ccagaccctg ccgagtgttg aatcaggtaa ttactatcag
    17521 tgtgattgac cttcatatcc tctaggacac ggtttacagc ccgtctttgc tggtaacgag
    17581 ggaaaatcag cgttttcttg tttttattat ccttatcaac cttcaaaaag ataaagcgtt
    17641 caatcaactg gaggatactg tctttagcca gcacttcctt ccaaaaatag gctgtgtctg
    17701 gactagattc attgtgcgga tttccagccc cctgattaac cccttcacca tttcccatat
    17761 tgaagggaag gaaataggta tcttgcccct tgatttcggt cgtcatgtag acttctaagg
    17821 tatctaccgc gaaagaagcc aaaacgcccg cattaaactt aaacaagcga tttttgctat
    17881 ctcgcttttt caactgacaa atagcatcat ctaccgattg accactggaa ttaagcttca
    17941 actcaatcgc aaataaagct aggccattta gaaagataac caagtctaca cgttcctgat
    18001 ccttgtagac aacctcttcc ataactgtaa aacgattttg ctcataccgc ttgactgcct
    18061 tggcattaaa ggaggtggca ggcttgggat agaccagttt caattgttta ttttcaatat
    18121 aaacccctga cttcaaggca aagagaagac ctcccttgat aatttcttgg ttaatcaagt
    18181 tgagaataac ctctttgtcc aacttcttca agagatagtc catctcgtct tcttgggttg
    18241 ctcgcagaaa ctcccacaag atgtctgtat ccattgccaa gcgctgatta tacttgctct
    18301 gcggtctgtg agtaaaacca ttttctgttt ctaaatccgt gataatccac tgctgaaaat
    18361 cataacgttc tgtaaggtca aaatgagcca taggtattcc ttattcttcc ttgtacttac
    18421 tctacatcat cgagggagag gatagacaga tacatatcca acctctcgtt taaataacgg
    18481 gcaaacaaat cttccattgc tgacagactt cccttagcat agaagtcatc aaaggcctga
    18541 taattggcta atcgatctga aactttaata tcaataggag gagagccagc cttcatcagc
    18601 tccaagttca ctaagagccg tccagtccga ccattgccat caataaaggg atgaatactt
    18661 tcaaaggcaa tgtgaaaacg agccatcttg gtcacgatgt tttcctgaca ctgagcatag
    18721 tccgccaacc actgctccat caagggacgg atcataaaag gctgggcagg ttcgtttgca
    18781 gcacccatga tacgaacggg cacctttcga tagacacccc tatcgtcctt cttatcggac
    18841 aaaaccagat agtgaatatc ctttacaacc tgctccgtca aaggcgtatc ttctgccacc
    18901 aaggtctgta cgtattcaaa agcttcccta tgaccaatag cctcaagatg atcctttaag
    18961 ggcttctgat caatggtcaa cccacgcaaa accatgtccg tttcacgcag ggtcagggta
    19021 ttgccctcaa tagcgttgga attataagtg aactccactg taaattcttc attgagccgc
    19081 tcaatctctc ctctggtcaa gggacgaagc gtcgctaacc ttgccatctt ttcatcaatc
    19141 aagggcagga ggctttccac ccttttataa cgaccatcaa ctggctttgg agtatctttg
    19201 ggaatcttcc ataaacgccc ctcacggata gcaccttcca cctttccctg actacacaag
    19261 tcacgaacac gacgatctga aatcccccag agctccgccg cctgcttgac agacatatac
    19321 ataggacacc tcaccttcta accaaaacag tccttttttc taatactatt atagcacagt
    19381 tcggaaggat aggggactaa cggaaggatg tttggaaatt ttcggaagga taggaatagc
    19441 ctaataattt tgacagaata atcattcatc aaaaattcaa ctattttcca tgtaggtatg
    19501 ctataattat ttatgcagaa gagtttctcc aaatgggaag agaggtttta tgtttctaaa
    19561 gcaataatag cttcttaaag acggtggctc taatttctga aaggtaggtg gtgcctatgg
    19621 gcaactcatc aaaatctaac agaaaggagc agattgttgt cagtttacga gacgatgcaa
    19681 ctgatgctgg gattcggtag tttcctacta tcccttattg gcttagtgat tgtcatcgta
    19741 aaaatgagca ataaaaaata accgtctaaa ctttgaccgg ttgacgatta ttttttagta
    19801 attataaaac tagtcaccgt cttaaacggt tctgcattgg gtagttgtga gtgcaactac
    19861 ccttttctat tctcattata acctaactag aaaaaatagt caaacgaggt cctactttag
    19921 cggttagaac tcctaactaa acttgtgctt attctaatat agttcggaag gaagatagtt
    19981 aacttatata cagactaatc aatccttaac tgtcctttgc tcatccaaat atatttgact
    20041 actcatacta tctttatcct tccaaaaaat accttcccat cgactgtaat attgttccct
    20101 tggtgtttga gtgaaatatt gcttctctcc aacgaaatcc caaataatac ttaattcatt
    20161 ttcttttaaa aatctatcaa gatagtcttt tctaatgatt aaaccgttaa tcacaccagt
    20221 cagttctcca tcaaaaacga ctaagttgtt gccatcataa taataaccat cgtgctcttt
    20281 ttgagttaaa ttcagtttac ttacgattgt tgtacttgga atatcgaatg aaactgtttt
    20341 ttctttagat aaatcgtatt cttcctccca taaaaaatgg atgcgagctg gctgtaactt
    20401 agcaattttc tttttgatat ttacgacaac atcttcttct atctctacaa attcaaatct
    20461 gtcacctgac aacttaaagt ctgtcttttt ttgtcgctca gtcctctgtt tcccagattc
    20521 cacataataa tcgtactgaa tattatatgc ctctattaca cttgatgacc aagcatactc
    20581 cctattataa aattgataat aagaaggagc tcctccagaa agattatttc tcaaaaactt
    20641 gttttcttgg atattttgaa taaagcctgc aaattctgag ttcgcaataa aataggcttc
    20701 cacaattctc catatccttt gttcaccttc aatataacca aataaatttc cttcattttc
    20761 ctcaggtata tattttaatt ctttgtgttg gtgtaataac acccactcaa ttccattatc
    20821 atctttataa tgcaaaggca tattaaataa actcggtttt tgattaatcc attcatcaat
    20881 ctcttcatta ttattcgatt cttgttcaag aaattctaac tcataatcaa tactaaactt
    20941 tggaagaata tgcaacggtg acaaggtatg gtgattcaaa gtaggatcaa agtcccttac
    21001 atagggattc caaggccctt taaaaccagt gtcttcatca tcccattttc tgagattatg
    21061 agtatcagag attctagcta aaatattgta gaacgctatc cattgatact ttttaccaat
    21121 tctttcagcc gactgccctc cacttctatc tagcggacga cgcatcccca tatcgtattc
    21181 tgacaaatct ttattcgacg tataacctaa ttcatcacga ataaattgca tggcataatg
    21241 atatagattt tcaatatcta tattctcaaa ttgagccaat gctgattgga aagtgtatct
    21301 tccaaaatca ccatatattc cgactccttc tggtctcatg gaagaatcta tccgatcaaa
    21361 tccatcaatc ttcgagcctg attcaaaatt tctgtaagtc tcaatcggta ctactggaat
    21421 tggttctgat ttatatggag gcactatttt tgaataattt attttagttt ccttgtcagg
    21481 aaattcaaat aaatatctct caataattaa tcttgcataa tctctcaaca aaatatctgg
    21541 atagatagat tccttatcga atacatttaa ataaacatat tctgctaagg attgaaattc
    21601 attatcaaat agattaactt ttttggtgct tgctccaaat attactccgt ataacctctg
    21661 aataatataa ggatcattca catcttcaaa ctttcttaac agaaattcac ttaattcaaa
    21721 atcatacttc aatatttcta tcatagcctt tgaagttaca tctctcaatt ttctattaga
    21781 agacgctaat agccatgtaa ataaagtaag aagtagtttg gttttttctt ttgacagttc
    21841 gtttacccta tctccattat catataaaga aattaactga taaaccctct catcttcata
    21901 agttaattga ttaataagcg gcaaccaaaa tccatcgcgt tcgtttagtt ttttagtaaa
    21961 caatatttca tgtaaaaatt ctgcattcag cggagatttt tctttagtgc aattttcaat
    22021 aagaactcgt aaaactaaat caatatcagt ggggtagtga tgtacaatac tttcaaaaag
    22081 ttctctactc aacgtatcag ctggacgcca agaaaaactt tttatatatc tatttgctaa
    22141 gtcataacaa tcatactcat cagtaacttt ttcaataagg ttaatacaat cttcaccaaa
    22201 tttttggaag caaaaacaac agacaaaaag aaacgtatcg atattatagc cgttttggat
    22261 ttcccccttt tcaatcttca ataactcttt ttcagagtac tccctgattg cttcattatt
    22321 tgaataaagt tccatgataa cttttgcttt taggtaatct tctaacaaat tgtatccaaa
    22381 agaatagact tctttatctg taaataaata atcgattacg agacctgatt tgacaagatt
    22441 tgaaataaag aatggctttt ttgaaatacc gtaattcgac caaaaattta accgcaaaaa
    22501 atctgtttta cttatactat ttgatttatt ttgtagttga tattgggcaa tttccaaaag
    22561 taaatccatt aaaattgctc cagaatctgg aatttccaaa acttgttgaa tttcctcatc
    22621 aactttagca ataattcttt caaacatttg aaaaagattt aactcttctc cattatatgt
    22681 ct
//
LOCUS       DASFRC010000014        22604 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.014, whole genome shotgun sequence.
ACCESSION   DASFRC010000014 DASFRC010000000
VERSION     DASFRC010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 22604)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22604)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22604
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.014"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            93..1169
                     /locus_tag="U1087_000403"
     CDS             93..1169
                     /locus_tag="U1087_000403"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000542485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEM4754918.1"
                     /translation="MAYVVAVVGATGAVGAQMIKMLEESTLPIEKVRFLASARSAGKT
                     LQFKGQDIVIEETTETAFEGVDIALFSAGGSTSAKYAPYAVKAGAVVVDNTSYFRQNP
                     DVPLVVSEVNAHALDNHNGIIACPNCSTIQMMVALEPVRQKWGLERIIVSTYQAVSGA
                     GMGAILETQAQLRAVLNDGVEPKAVEANILPSGGDKKHYPIGFNAIPQIDLFTENDYT
                     YEEMKMTKETKKIMEDDSIAVSATCVRIPVLSAHSESVYIETKEIAPIDEVKAAIAAF
                     PGAVLEDDVANQVYPQAVNAVGSRDTFVGRIRKDLDKENGIHMWVVSDNLLKGAAWNS
                     VQIAETLHERGLVRPTAELKFELK"
     gene            1242..2177
                     /gene="dapA"
                     /locus_tag="U1087_000404"
     CDS             1242..2177
                     /gene="dapA"
                     /locus_tag="U1087_000404"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HEM4754919.1"
                     /translation="MSIQDLRDVKIITAMITPFKEDGSINFEVLPELIEHLLSHHTEG
                     ILLAGTTAESPTLTHEEELELFGAVQKIVNGRVPLIAGIGTNDTRDSIEFAKEVAAFG
                     GFAAGLAIVPYYNKPSQEGMYQHFKTIADASDLPIIIYNIPGRVVVEMTPETMLRLAE
                     HPNIIGVKECTSLANMAYLIEHKPEDFLIYTGEDGDAFHAMNLGADGVISVASHTNGD
                     EMYEMFTAIEQQDIRTAAAIQRKFIPKVNALFSYPSPAPVKAVLNYLGFEVGPLRLPL
                     VPCPEEDAKRIIKVVVDGDYEATKATVTGVVRPDY"
     gene            2546..3898
                     /locus_tag="U1087_000405"
     CDS             2546..3898
                     /locus_tag="U1087_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM4754920.1"
                     /translation="MNIVIIGASFAGLSAALECRKLYQNVQITLIDREKDVAYFPNTL
                     NWKVAGKISGWEEAKISLFSEVQHAAISCLFETECLAVYPEMRKVKIRHHQDIGDIIY
                     DRLILAMGASQTWEWGTEELQDYLIRSKTLSQAQASLEKLTNAKTVAVIGAGQIGLES
                     LDALSQLDLNLHVFEAQDSLLAKYVDEDMIASIRQEMEKRGIQLHLSETVNQITIDTQ
                     EEQLVCHTVTGNYPADLVLPSTNLTPNIQLVKDKLKVTAEGTVWVDEFLETSQENIFA
                     VGDLVSLPVDYFGQAYLPMIHHAIMTGRMAARNLQKRIAPIKRAQRIVSSHVFGYYIT
                     SLGLTESEASLWLESKSIRIRRSYSQWEPTLVDFKLIVEETSGRIIGGQLVSTADYIE
                     QMDVLSLAISKDLTVFDLVEHSWLCLPGNTPLVPFIVEAAQEYIRQFYQVDGEGVYAD
                     "
     gene            3888..5351
                     /locus_tag="U1087_000406"
     CDS             3888..5351
                     /locus_tag="U1087_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM4754921.1"
                     /translation="MRIDSLLEKRERAIYQLLLYLEDRKEAPSLKDICHYLELSKSTL
                     LRYIVSFNEEAGVADLGLSFQLEDEKVFLKKKASLSLHRILAYLCQTSTKYQIIVYLS
                     DKEEVSIQQLAQELLISEATLNRHLASLNQILAEFGIGIKSGRLKGSELQIRYFLHQM
                     LSLTTTRAELQEEFMLGKIEALLPVFERFYQSPLNPKQAHRLLLWLMISQQRSRLRQL
                     DFKHLYKLMEPYQEHKFYRRLRKMYFTLSQQQSTSFQEGEIMALFAFLFSHFILAPHQ
                     LEQVLGFGGPIMEATSLALQKLRLYFEGNLPVSEEALYHLNQIMSQLYFFYSSVELEE
                     VEASSFYPEAEDLLKDVYKSVFHRKVDKEIRNSYLTNIADLYIYFSQVQPIQVKVAFA
                     SSLHEVLSYPLLLQLREKLEGNRQVLIEPYQAGYDYDLIITDYLENTSIPVYCLGNRL
                     KIQDIVQLKAWIQDIYHQKSCQSEIMATKTSFPIEHR"
     gene            5581..7095
                     /gene="glpK"
                     /locus_tag="U1087_000407"
     CDS             5581..7095
                     /gene="glpK"
                     /locus_tag="U1087_000407"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HEM4754922.1"
                     /translation="MSTEKYIMAIDQGTTSSRAIIFNKKGEKVGSYQKEFTQIFPKPG
                     WVEHNANEIWNSVQSVIAGSFIESGVRPDQIEGIGITNQRETTVVWDKETGLPIYNAV
                     VWQSRQTAHIADQLKADGHADMIHQKTGLVVDAYFSATKVRWILDQVPGAQERAEKGE
                     ILFGTIDTWLVWKLTDGKCHVTDYSNAARTMLYNIEELKWDDEILSLLNIPKAMLPEV
                     RSNSEVYGTTAPFHFYGAEVPISGMAGDQQAALFGQLAFEPGMVKNTYGTGSFIVMNT
                     GEEMQLSQNNLLTTIGYGIGGKVYYALEGSIFIAGSAVQWLRDSMRMVTTSPESEELA
                     RKSTSNDEVYVVPAFTGLGAPYWNSDARGSVFGLTRGTTKEDFVKATLQSIAYQVRDV
                     IDTMQLDTGIDISVLKVDGGAAMNSLLMQFQADILGIEIARAQNLETTALGAAFLAGL
                     AVGFWKDLDELKELNAVGQSFQPTMNEARKEQLYKGWKKAVAATQLFAEVDEEQ"
     gene            7171..9000
                     /gene="glpO"
                     /locus_tag="U1087_000408"
     CDS             7171..9000
                     /gene="glpO"
                     /locus_tag="U1087_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glycerol-3-phosphate oxidase"
                     /protein_id="HEM4754923.1"
                     /translation="MEFSKETRRLAIERMQDRQLDLLIIGGGITGAGVALQAAASGME
                     TALIEMQDFAEGTSSRSTKLVHGGLRYLKQFDVEVVSDTVSERAVVQNIAPHIPKPDP
                     MLLPVYDEPGSTFSLFRLKVAMDLYDLLAGVNNTDMANKVLTKEEVLEREPNLKQEGL
                     IGGGVYLDFRNNDARLVIENIKRAAKDGALIASRVKAEKFIKDEAGKVVGIVARDLLT
                     DRTFEIRAHLVINTTGPWSDEVRNLDGEGSGVLQLRPTKGVHLVVDSSRLSVPQPTYF
                     DTGHADGRMVFVLPRENKTYFGTTDTDYTGDLANPMVTQEDVDYLLDIVNNRFPEANL
                     TLDDIESGWAGLRPLLSGNGASDYNGGNNGKLSDDSFNSLIETVKGYLHNEKTRDDVE
                     HDLTHLEGSVSEKHLDPSAVSRGSALDRDDNGLLTLAGGKITDFRKMAEGAIEKVADI
                     LKEEHGRSFKLINSKTYPVSGGELNPANVAEEIEHLAQLGVKKGLVYDDALYLANLYG
                     SNAPKVFALNHKVEAVSGLNKRDLLSLHYAMKEEMTLTAVDYLLRRTNYMLFMREQLD
                     AVAPDVLKEMAAYYAWSEEEVAQQEQLLADTLVKNDLTHLKEK"
     gene            9014..9721
                     /locus_tag="U1087_000409"
     CDS             9014..9721
                     /locus_tag="U1087_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin family protein"
                     /protein_id="HEM4754924.1"
                     /translation="MTNELIGEVLGTALLILLGNGVVAGVVLDKSKAKDAGWIVITIG
                     WGLAVAMAAFVSGLLGPAHLNPAVSIAMAFAGNLPWGSVVPYILAQFIGAFIGSILVY
                     LTYKDHYDATEDTGAVLATFSTGPAIRNLVSNTISEAIGTFVLVLGLLAFGQYDFPTG
                     LGTLIVGGLIVSLGVSLGGPTGYALNPARDLGPRIMHAILPLKHKGDSDWGYALVPVV
                     GPIIGGLLAALLYGLIF"
     gene            9853..10803
                     /locus_tag="U1087_000410"
     CDS             9853..10803
                     /locus_tag="U1087_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM4754925.1"
                     /translation="MNNTGIHHISSLVGNIHQAYHFYHHILGLKLTLKTVNQEDSSMY
                     HLFFGDEEGRFGTEFTIFDMPNHPSHRPGSNRLERTVFLVKDFAALEFWQKRLTEFEV
                     ENEGIQAFGNGHILNFQDEDGQLLGLTYHNAIGEMFPYKTDEIPSEYAILGIASLHMR
                     IREEKELLSLLTETFGFVEESRFVFEDKMVISLLFDNTFQHRLYLILDQESPISVLGV
                     GAIHHIAFGVLDESDLEDLISRLNLINRPHSGIINRDFIHSLYFRAPNYLMFEVATMT
                     GERESEMPAQNEELDQVDLFLPSFFEEDRQEIEKNLSQRY"
     gene            11026..11418
                     /locus_tag="U1087_000411"
     CDS             11026..11418
                     /locus_tag="U1087_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754926.1"
                     /translation="MRLSAFLDFWQDLDIQPYQQITFVGFSNGANFIMDLLTKQSNLA
                     DNYILLHPSALDYAFPMENSRAEVLFTLGQNDQLVDQVALEHLVDDWRVSAFHKANLV
                     CFDKGHFLSQDELTYIKNWYQERIDKKT"
     gene            complement(11447..13237)
                     /gene="pepF"
                     /locus_tag="U1087_000412"
     CDS             complement(11447..13237)
                     /gene="pepF"
                     /locus_tag="U1087_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoendopeptidase F"
                     /protein_id="HEM4754927.1"
                     /translation="MTNAMPKRQEIDVQLTWDTDILFPTPDNYKENLAAYAKQVTAFE
                     SNYKGKLTDKDTIVSALTEYEKIVILDSRLSHYAFLPLEVDKMNTELASLANEYDLVS
                     AKARPQRDFLYSELGQLDEAFLLELKEEQPQWAAFFDGILRDKPHQLHPLQEELLSNF
                     APTFGQPYNNYGVTKFEDMTFDNFEANGQTLGNSYVLFENDYELSHDTEIRRNSAAGF
                     YSTLKKYKNTTAATYLSHIKNEQIEARLRGFDNTIDFLLHSQNVSRDLFDRQIDVIMK
                     ELAPHMRRYVKLVAKAHGLDKITHADLKISLPSEYNQRITPEESKQFLIDCLGILGED
                     YVKMIEQSFDERWIDFAQNEGKATGGFCATLYDGPSYILLSWTGLMNEVLVLAHELGH
                     AGHFQLAKKQSVLSYDPSLYFIEAPSTANEVLTCNTLLKNNQDPGFQAYLISELISRT
                     YFHNMVTHLLEAAFQREVYTRLDNEEYLNGDILCQIKLDVIKEFWGNDFEIGDDAGLI
                     WMRQPHYYIGLYPYTYSAGLTIGTAMAKQLEEHPEEVVEKWLETLSLGASLSAQDLAK
                     HAGVDVSTDQPLKETIAYIGSLVDKLETLI"
     gene            13404..13742
                     /locus_tag="U1087_000413"
     CDS             13404..13742
                     /locus_tag="U1087_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002264292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754928.1"
                     /translation="MQVIKRSGEIVEFDPDKIYQAIIKAAQTVYVIDETWRKNLAQVT
                     KKVVLDLEEAHTERPTISMVQSQVEHRLLDAGYISIAEHYISYRLQRDLERNGYGDKI
                     IVHLRFEQVR"
     gene            13928..15295
                     /locus_tag="U1087_000414"
     CDS             13928..15295
                     /locus_tag="U1087_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019768617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEM4754929.1"
                     /translation="MAKIVVVGANHAGTAAIKTMLTNYGQENEIVVFDQNSNISFLGC
                     GMALWIGEQIGGPEGLFYSNKEELESLGATVYMESPVTNIDYDAKTVTALVNGQEHVE
                     SFEKLLFATGSQPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIEKLKNKDI
                     NRVAVVGAGYIGVELAEAFQRKGKEVILIDVVDTCLAGYYDRDLSDLMAKNLEEHGIQ
                     LAFGETVKEVAGNGKVEKIITDKNEYDVDMVILAVGFRPNTAFAGEGIERFRNGAFLV
                     NKRQETSIPGVYAIGDCATIYDNATGDTSYIALASNAVRTGIVAAHNICGTDLEGIGV
                     QGSNGISIYGLNLVSTGLTLEKATRLGLNAAVTEVTDNQKPEFMEHGNFPVTIKIVYD
                     KDSRRILGAQMAAREDISLGIHLFSLAIQEGVTIEKLALTDLFFLPHFNKPYNYITVA
                     ALGAE"
     gene            15438..16649
                     /locus_tag="U1087_000415"
     CDS             15438..16649
                     /locus_tag="U1087_000415"
                     /inference="COORDINATES: protein motif:HMM:NF014691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HEM4754930.1"
                     /translation="MYKRLEIVSYSDFDNYEAEYQKRFDSLATIKTGLTINPFSKREQ
                     RRLADKHQLFYVLLPNHVMDIEKIYKNSQLLSNFDLSSVQMQKLFYLQIIDEIQSTND
                     MEGVKSTRKEIKEAYNSLDKNKRFSGIVSMYHSILKNEFEKIDSLSKFRNIYDQLFLD
                     EMSEDEKPDGELFRKKVIYVGDGNSYVHQGNSSEFSINEDLTKLIIFMNNPEIPLIIK
                     SIITHYFFEYVHPFYDGNGRMGRFLMSSYLSRKLDFLTGLSLSESVLQNKSKYEEGFS
                     ITSHPKNRGDLTPFVGTMLEIILNAQENMKTKLGKLKSQLDRVWILIDGLDLTGPQKE
                     LLFILSQDKLFDVLHTGVSNKELTEAFGGKYKRTRIDSTLKTLEGMGLVTKVKSSPVI
                     YEVSSNLIKDI"
     gene            16924..19203
                     /gene="pcrA"
                     /locus_tag="U1087_000416"
     CDS             16924..19203
                     /gene="pcrA"
                     /locus_tag="U1087_000416"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase PcrA"
                     /protein_id="HEM4754931.1"
                     /translation="MNPLLNGMNDRQAEAVQTTEGPLLIMAGAGSGKTRVLTHRIAYL
                     IDEKMVNPWNILAITFTNKAAREMKERAYALNPATQDCLIATFHSMCVRILRRDADHI
                     GYNRNFTIVDPGEQRSLMKRILKNLNLDPKKWSERSILGTISNAKNDLIDDKAFEAQA
                     GDLYTQIVAKCYTAYQKELRQSEAVDFDDLIMLTLRLFDQNPEVLTYYQQKFQYIHVD
                     EYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDFEKDYPESKVVL
                     LEENYRSTKNVLQAANEVIENNRNRRPKKLWTQNAQGDLITYYRARDENDEAIFVAGQ
                     IDQLHREGKAYKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISY
                     LNIIANPSDNISYERIVNEPKRGVGPGTVDKLRDFATSHSMSLLEASQDIMLSPVKGK
                     AAQAVFDLANLLYNLRNQLDNLTVTQVVEAVLNQTGYIDALAAQNTLEANARIENIQE
                     FLSVTKNFDEKDVEEEETGLDRLTRFLLDLALIADTDDGDTESSEVTLMTLHAAKGLE
                     FPVVFLIGMEENVFPLSRAAEEEDELEEERRLAYVGITRAEQTLYLTNANSRLLFGRT
                     NYNQPSRFIREISSDLLDYQGLARPANTSFKASYVNGRATQFGQGMSLQQALQSRKAS
                     VQPSAKLGGSMPFASSNRSSSSGTNWSVGDIAVHKKWGRGTVLEVSGSGSNQELKINF
                     PEMGLKKVLASLAPISKED"
     regulatory      19266..19355
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            19688..20335
                     /locus_tag="U1087_000417"
     CDS             19688..20335
                     /locus_tag="U1087_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM4754932.1"
                     /translation="MNKMVIWFDLDGVIFDSYDVWDQVVQGILKLHGVAYTQQIKEEL
                     WRIPMEDVNAYLLQLVENSLDENELERQKMNQLQSLYRDISLMDGVHELLSTLKAKGA
                     VMYAVTSNYLELAELGLSSHHLSNYFVKLFSSLDLFGSDKNREFYQFILHQEQIDPAN
                     IVMVEDNMNNLRIGHELGIAGVYIEHPNSPFSDENTGIVSIKQLSELIPILEDRK"
     gene            20332..21129
                     /gene="thiD"
                     /locus_tag="U1087_000418"
     CDS             20332..21129
                     /gene="thiD"
                     /locus_tag="U1087_000418"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HEM4754933.1"
                     /translation="MTSLHVALSIAGTDPTGGAGIMADLKSFQARSVYGMAVVTSVVA
                     QNTKGVQLIRHLDQEILEEQLKSVFQDIVPDAIKTGMLAQVETIELVASYLAKQKCPY
                     VLDPVMVATSGDRLIEEDAIQALKTKLLPLATIITPNLPEAEVLVGRTLKSENDIMNA
                     GRWIRKEFGLKNVVIKGGHLAKAASDYLFLEDGEISVISSARISTNHTHGTGCTYAAV
                     ITAELAKGRTVAKAVETAKRFITEAIQTAPELGHGNGPVNHTTYRGE"
     gene            21134..21919
                     /gene="thiM"
                     /locus_tag="U1087_000419"
     CDS             21134..21919
                     /gene="thiM"
                     /locus_tag="U1087_000419"
                     /EC_number="2.7.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyethylthiazole kinase"
                     /protein_id="HEM4754934.1"
                     /translation="MYLEKLRSQNPLTICITNDVVKNFTANGLLALGASPAMSEYPED
                     LEDLLPYAKGLLINTGTLTNETWELYKSALDIAEKYGVPTVLDPVAAGAGAYRKKVTL
                     DLLHHHTISLVRGNAGEIAALIGESIETKGVDSAQIDNVGELALRANQQLGIPVVITG
                     KKDAAAVNHQVRILENGSELMPLVTGTGCLLGAVLAASIHLADEDSLLDCLEEVLSAY
                     SIAGEMAEQKTLLPGTFQIEFINSLYAIQSEEVEENKKVIQYE"
     gene            21912..22601
                     /locus_tag="U1087_000420"
     CDS             21912..22601
                     /locus_tag="U1087_000420"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEM4754935.1"
                     /translation="MNRKMLQVYFICGTSDCPKGKFLDVLEKALQAGITCFQFREKGE
                     QGLTGADKLLLAKQVQHLCHRYQVPLIINDDVELARAIDADGIHLGQEDLSVVEARQL
                     FPGKIIGLSVGTKEEYLNSPIDLVDYIGSGPVFPTLSKDDASPAIGMDGLKQLRKLNS
                     DIPMVAIGGLSAKDCKEVLQAGADGIAVISAISHAEDPYKATKILVDGMQAMILKFNQ
                     VESNKQILKSP"
BASE COUNT         6759 a         4314 c         5051 g         6480 t
ORIGIN      
        1 atttcagact ttccatttat tgaaattgtg gtataattat gaaataacaa atatttagaa
       61 aattttgaag aattgactta aaggagattt ctatggccta tgtagtagct gttgttggtg
      121 ccactggtgc agttggtgcc caaatgatta aaatgttgga agagtcaaca cttccaatcg
      181 agaaagtgcg tttccttgct tctgcccgtt cagcaggcaa gaccttgcag tttaaggggc
      241 aggatattgt cattgaagaa acaacagaaa cagcctttga aggagtggat attgccctct
      301 tctcagctgg tggctctaca tctgccaagt acgctcctta cgctgtaaaa gcaggagctg
      361 tagtagttga caatacctct tacttccgtc aaaatccaga tgttcctctg gttgtttctg
      421 aggtaaatgc tcacgcgctt gataatcaca atggtatcat cgcctgccct aactgttcaa
      481 ctattcaaat gatggtcgcg cttgaacctg tccgtcagaa atggggcttg gagcggatta
      541 tcgtatcgac ctatcaggcg gtttctggtg caggtatggg agctatcttg gaaacccaag
      601 ctcaattgcg tgcagtcttg aatgatggag tagagccaaa agcggtagaa gcaaatattc
      661 ttccttctgg tggcgataag aagcactatc caatcggttt caatgctatt ccgcaaatcg
      721 acctcttcac tgaaaatgac tacacttatg aagagatgaa gatgacaaaa gagactaaga
      781 aaatcatgga agatgacagt attgctgttt ctgcaacctg cgtccgcatt ccagtcctgt
      841 ctgcccactc tgagtctgtt tacatcgaaa ctaaggaaat tgctccaatt gatgaggtaa
      901 aagcagccat tgcagctttc ccaggcgcag ttttggaaga tgatgtggca aaccaagtct
      961 atccacaagc tgtcaatgca gttggtagcc gcgatacctt tgtcggtcgt atccgtaagg
     1021 acttggacaa ggaaaacggt attcatatgt gggttgtctc tgacaacttg cttaaaggtg
     1081 cagcatggaa ctctgttcaa atcgctgaaa cccttcatga gcgtggtcta gttcgtccaa
     1141 cggcagaatt gaagtttgaa ttgaaataat tttattaacc aaaagtacac aaaaggctgc
     1201 actcagcctt ttttagcaac aatcagtaag agaggaagcc tatgtctatt caagatttac
     1261 gtgatgtaaa aattattaca gcaatgatta cccctttcaa agaagatggt tcgattaatt
     1321 ttgaagtttt acctgagttg attgagcatc tgttgtccca tcacacagaa gggattttat
     1381 tagcaggaac aactgccgaa agtccaaccc tgacacacga ggaagaactg gaactatttg
     1441 gtgctgtgca aaaaattgtc aatggtcgtg ttcccctaat tgcaggtatc ggtacaaacg
     1501 atacgcgcga ctcgattgag tttgccaaag aagtggcggc attcggcggc tttgcggcag
     1561 ggcttgctat cgtgccttac tacaacaaac cttctcaaga aggcatgtac cagcacttca
     1621 agactattgc ggatgcctct gatttgccaa tcattatcta caatatccca ggtcgtgtcg
     1681 tggttgaaat gacgccagaa accatgttac gtttggctga gcatccaaac atcatcggtg
     1741 ttaaagagtg tacaagcctt gccaacatgg cttacctaat tgagcataaa ccagaagact
     1801 tcttgattta tacaggagag gatggcgatg ctttccatgc aatgaacttg ggagcagatg
     1861 gtgtgatttc tgttgcatct cacacgaatg gtgatgagat gtatgaaatg tttacagcca
     1921 tcgaacaaca agatattcga acagcagccg ctattcaacg caagttcatt ccgaaagtca
     1981 atgccctctt ctcatatcca agtcctgcac cagttaaggc ggttcttaat taccttggat
     2041 ttgaagttgg tccactccgc ctgccgttgg ttccatgtcc agaagaagat gccaaacgca
     2101 ttatcaaagt agtcgttgac ggcgactacg aagcaactaa agctactgtg acaggagtcg
     2161 taagaccgga ttattaaaat agtcagggga gtgactattt taacgtgagc cttgaaataa
     2221 gagagcgagc aatgtctggg ggagtgaaac agttcgggga actgtttcag ctggtcacca
     2281 agaaatacga aagtgaccat agaagacccg agccaagaaa tgcgaaagcg aggatagtca
     2341 agggagtgac tattttaacg tgagttagag cataaagagt gaggagtttg gaaaaacatt
     2401 aatctagagg agcttctggc cattttcctc gttttattta agtttacaca agcacatcag
     2461 ttatctggtg tgttttttag ttgcaagcct tttcaatttt ttggcattct tgatataatg
     2521 actaaaaacg ataaaaggat taagtatgaa tattgttatt ataggcgcct cctttgctgg
     2581 tttaagtgca gctttggaat gtcgaaaatt gtatcaaaat gttcagataa cactaattga
     2641 tagagaaaaa gatgtggctt actttccaaa taccttgaat tggaaagtgg caggaaaaat
     2701 ttctggttgg gaagaagcga agatttcttt gttcagcgag gtgcagcatg cagctatttc
     2761 ttgtcttttt gaaacagaat gtctcgcagt ttatcccgaa atgcgaaagg taaagatacg
     2821 acatcatcaa gatataggtg atattattta tgaccggcta atattggcta tgggagctag
     2881 tcaaacatgg gaatggggaa cggaagaact tcaagactat ctaattcgct caaaaacgct
     2941 atctcaagca caagctagtc tagaaaaatt gacaaatgca aaaacagttg cagtgattgg
     3001 ggcaggacag attggtttgg aaagcttgga tgcccttagc cagttggatt tgaatttgca
     3061 tgtgtttgag gcgcaagatt cactccttgc aaagtacgtt gatgaggata tgattgcgtc
     3121 gattcgtcaa gagatggaaa aaagaggaat ccaacttcat ttatccgaaa cagtcaatca
     3181 gataacgatt gatactcagg aagaacagct ggtttgtcat acagttacag gtaattatcc
     3241 agctgattta gtcttgccat ccaccaattt gacgcccaat attcagctag tgaaagacaa
     3301 gctaaaagtg actgcagaag ggactgtatg ggtggatgag tttcttgaaa caagtcaaga
     3361 gaatattttt gctgtaggtg atttggtcag tctcccagta gattattttg gtcaggcata
     3421 tcttccgatg attcatcatg cgattatgac agggaggatg gctgctcgaa atttgcaaaa
     3481 gaggattgct cctattaaga gagcccagcg gattgtttct agtcatgtat ttggctatta
     3541 tataactagc cttggcttga ccgagagtga ggcgagcttg tggttggaga gtaaatcgat
     3601 tcggattaga aggtcgtata gccagtggga accaacttta gtagatttca agctgattgt
     3661 cgaagaaacg agtgggcgca tcataggggg gcaactcgtt tctactgcag attatattga
     3721 acagatggat gtactgtctc tagcgatttc aaaggatttg accgtctttg acttggtaga
     3781 acattcttgg ctctgtcttc ctggaaatac tcctctggtc cccttcatcg tagaggccgc
     3841 tcaagagtat attcggcaat tttatcaggt tgatggggag ggtgtctatg cggattgatt
     3901 ccttattgga aaagcgtgag cgcgccattt atcagcttct cctctactta gaagatagga
     3961 aagaggcgcc atcgctaaag gatatttgtc actatttaga attgtcaaaa tcaactcttc
     4021 ttcgctatat tgtatctttc aatgaagaag caggagtagc cgacttggga ctctcttttc
     4081 aactcgaaga tgaaaaggtc tttttgaaga aaaaggccag tttgagtctt catcgtatcc
     4141 tagcctatct ctgtcaaacc agtaccaaat atcaaattat tgtttattta tctgataagg
     4201 aagaggtttc tattcaacag ctggctcaag aattgctgat aagcgaagcg actctgaatc
     4261 gccatcttgc ctctttgaac cagatattgg cagaatttgg tattggaatc aaaagtggtc
     4321 gtctaaaagg tagtgagctt caaatacggt actttttaca tcaaatgttg agtttgacta
     4381 ctacgagagc ggaattacaa gaagagttta tgctagggaa aatagaggcc ttattgccgg
     4441 tttttgaacg cttctatcaa tcgccgctaa atcctaagca agcccatcgt ctgttgttgt
     4501 ggttaatgat ttcacagcaa cgctctcgat tgcgacagct agattttaag cacctttaca
     4561 aattgatgga accctatcaa gaacataagt tttaccgacg tttgagaaag atgtatttta
     4621 cactaagtca gcaacaatcc acctctttcc aagaagggga gattatggcg ttgtttgctt
     4681 tcctgtttag ccatttcatt ttagcgccgc atcaattaga gcaggttctt ggtttcggtg
     4741 ggccgattat ggaagctacc tctttggctc ttcagaaatt acggttatat tttgagggaa
     4801 atttaccagt ctcagaagaa gcactctatc atctgaacca aattatgagc cagctatatt
     4861 tcttttattc ttccgttgaa ctggaagaag tagaagcttc tagtttctat ccagaagcag
     4921 aagacttgct aaaagacgtc tataaatcag tttttcatag aaaagtcgat aaagaaataa
     4981 ggaactctta tctgacaaat attgcggatt tgtatattta ttttagtcag gtccagccta
     5041 tacaggtcaa ggttgctttt gcttcttccc tacatgaggt tctatcctat cctctcttgt
     5101 tgcaactaag ggagaagtta gaaggcaatc gtcaggttct tattgagccc tatcaagcag
     5161 gatatgacta tgatttgatt attacagatt acctcgaaaa tacaagcatt ccagtttatt
     5221 gcctaggaaa tcgattgaaa atccaagata tcgtacaatt aaaggcatgg atacaggata
     5281 tatatcatca aaagtcctgt caatcagaga ttatggcgac caaaacttct tttcctatcg
     5341 agcatcgcta gatgatgtca gatagtcttt gtgaaaaatg taagtgcatt taaccttgaa
     5401 aaatttattt tataaactct gataacagtt gatagaatca tctttctagc cactgcttat
     5461 cagatttttt tatttttttg aaaaaaatga taggaaaaat tcacaagaat gggttagaat
     5521 agaattacca agaaaacgga agcgttttca aaaaaagata aacaaacagg agggagacct
     5581 atgtctactg aaaaatatat catggccatt gaccaaggaa ctacaagttc acgcgccatt
     5641 atcttcaata aaaaaggtga aaaggttggc agttaccaaa aagagtttac gcaaattttc
     5701 cctaaaccag gttgggtcga acataacgcc aatgaaattt ggaattctgt tcagtctgtg
     5761 attgcagggt cctttatcga aagcggtgtt cgtcctgatc agattgaagg aattggtatt
     5821 accaaccagc gtgaaacaac cgttgtctgg gataaggaaa caggtcttcc aatttacaat
     5881 gccgttgtct ggcaatctcg tcaaacagct catattgctg accagctgaa ggcggatggt
     5941 catgcagata tgattcatca aaagacaggt ctagtagtcg acgcctactt ctcagcaacc
     6001 aaagttcgct ggattttgga ccaagtccct ggagcgcagg aacgtgctga aaaaggggag
     6061 attctcttcg gaaccattga tacttggttg gtttggaaat tgacagatgg gaaatgccat
     6121 gtgacggatt attcaaacgc agctcgtacc atgctctaca acattgaaga gttgaaatgg
     6181 gatgatgaaa ttttatctct tctcaatatt ccaaaagcca tgttgccgga agttcgttca
     6241 aactctgaag tttacggcac aacagctcca ttccatttct atggcgcaga agtgccaatc
     6301 tctggcatgg caggtgacca acaggctgcc ctatttggac aattggcatt tgagccaggt
     6361 atggtgaaaa atacttacgg aaccggttcc ttcatcgtga tgaatacagg tgaagagatg
     6421 cagttgtcac agaacaacct tctcacaaca attggctatg gtatcggcgg caaagtctat
     6481 tatgcgcttg aaggatctat ctttatcgct ggttcggcgg ttcaatggct ccgtgatagc
     6541 atgcgaatgg tgactacatc acctgagtca gaagagcttg ctcgtaagtc taccagcaat
     6601 gatgaagtct atgttgttcc agcctttaca ggacttggtg ctccctattg gaactcagat
     6661 gcgcgtggct cagtctttgg tctcactcgt ggtacgacta aagaagactt cgtcaaagca
     6721 actcttcaat ccattgccta ccaagttcgt gatgttattg ataccatgca attagataca
     6781 ggtattgata tttctgtctt gaaggttgac ggtggtgcag caatgaacag cctcctcatg
     6841 caattccaag cagatatttt gggtattgaa atcgcacgcg ctcaaaacct tgaaactaca
     6901 gctcttggag cagcattctt agcaggttta gcagttggtt tctggaaaga tttggatgaa
     6961 ttgaaagaac tcaacgctgt cggccaatcc ttccaaccaa ccatgaacga agctcgtaaa
     7021 gaacaacttt acaagggatg gaaaaaagct gtcgcagcaa ctcaactatt tgcagaagtg
     7081 gatgaggagc aataaaggac ttgttagcta ggggaaagaa gaatttcctc ttgctagaca
     7141 gtcctattcg aaagttagga agtgaatcgt atggaatttt caaaagaaac aagacgctta
     7201 gctattgagc gaatgcagga tcgtcaactt gacctcttga ttatcggggg tggtattaca
     7261 ggtgctggtg tggctttaca ggcagctgca agtggcatgg aaacagcctt gattgaaatg
     7321 caagactttg cagaaggaac atccagccgt tcaacaaaat tggtgcatgg tggattacgt
     7381 tatttgaaac aatttgacgt ggaagtggta tccgataccg tatctgaacg tgctgtagta
     7441 caaaatattg ccccacatat tccaaagcca gacccgatgc tcttgccagt ctacgacgag
     7501 ccagggtcaa ccttcagtct tttccgtttg aaagtggcta tggacctcta tgatctcttg
     7561 gctggcgtca ataataccga tatggccaat aaggtcttga ctaaagaaga agtacttgaa
     7621 cgtgaaccaa acttgaagca agaaggtttg attggtggcg gtgtctatct tgatttccgt
     7681 aacaatgatg cccgcttggt tattgaaaat atcaaacgtg cagccaagga tggtgccttg
     7741 attgccagcc gtgtcaaagc tgagaaattc atcaaggatg aggctggaaa agttgtcggg
     7801 atcgtcgctc gtgacttact gacagaccgc acctttgaaa tccgtgctca tttggtcatc
     7861 aatacaacag gaccatggag tgatgaagtg cgtaatctgg atggagaagg ttcaggcgtt
     7921 ctccagttgc gtccgaccaa gggtgtgcac ctagttgtcg atagctctcg cctgtctgtt
     7981 ccacaaccaa cctactttga cactggtcac gctgacggcc gtatggtttt tgtccttcca
     8041 cgtgaaaata aaacttattt tggtacgaca gatacagact atactggtga tttggcaaat
     8101 ccaatggtaa cccaagaaga tgttgactac ctgcttgata ttgtcaacaa tcgcttccca
     8161 gaagcaaatt tgaccttgga tgacattgag agcggttggg caggtcttcg tcccctcttg
     8221 tctggaaatg gagcttctga ctacaatggt ggaaacaacg gtaagctcag cgatgacagc
     8281 tttaatagct tgattgaaac ggtcaaaggt tatttgcaca atgaaaagac tcgtgacgat
     8341 gtggaacatg atttgacaca tttggaaggt agcgtttctg aaaaacactt ggatccttca
     8401 gctgtatcac gtggctctgc ccttgaccgt gatgacaatg gtttgctgac tcttgctggt
     8461 ggtaagatta ctgacttccg taagatggca gaaggtgcaa ttgaaaaagt ggcagacatc
     8521 ctcaaagaag aacatgggcg tagcttcaaa ctcatcaatt ctaaaactta cccagtctct
     8581 ggtggcgaat tgaacccagc taacgtagca gaagaaattg aacatcttgc tcaactaggt
     8641 gtgaagaaag gacttgtcta tgatgatgcg ctttacttgg caaacttgta cggctcaaat
     8701 gcgccaaaag tctttgcctt gaaccataaa gtagaagccg tttctggctt gaacaagcgt
     8761 gacttgcttt cccttcatta tgctatgaag gaagagatga ccttgaccgc agttgactat
     8821 cttctccgtc gtaccaacta catgctcttt atgcgtgagc agttggatgc ggtagcacca
     8881 gacgttttga aagaaatggc agcttactat gcttggtcag aggaagaagt tgctcaacag
     8941 gaacaattgt tggcagatac acttgttaag aatgatttga cccatttgaa agaaaaatag
     9001 aaagaggtgc atgatgacaa atgaattaat cggtgaagtg ttgggtactg ccttgctgat
     9061 attacttggt aacggtgttg tagcaggggt agtgctagat aagagtaagg ccaaggatgc
     9121 tggttggatt gtaatcacaa ttggttgggg tctagcagta gccatggcag cttttgtgag
     9181 tggtttattg ggacctgccc acctcaatcc agctgtatca attgccatgg cctttgcagg
     9241 aaatctccca tgggggtctg tagtccctta tatccttgct caatttatcg gagcctttat
     9301 cggaagtatc ttggtctacc tcacgtacaa agatcactac gatgcaacag aagacactgg
     9361 tgctgtgttg gcaactttct ctactggacc tgccatccgg aacttagttt ctaatacaat
     9421 tagcgaagca atcggaacct ttgttttggt cttgggatta ttggctttcg gtcagtatga
     9481 ttttccaaca gggctaggca ctttaatcgt cggtggtttg attgtttccc tcggagtttc
     9541 tcttggtggt ccaacaggat atgccctaaa ccctgcgcgt gatcttggtc ctcgtatcat
     9601 gcatgccatc cttccattga agcacaaggg cgattcagat tggggctatg ctttggtacc
     9661 agtagttggt ccaatcatcg gaggcttgct tgcggctctc ctttatggtc tcatttttta
     9721 aaaaatatcc ttctctaatc agcaatggtt agggaagttt tttattattt ggctgtcaat
     9781 cgtgagcaaa agtttgtttt atatcaataa ttagcgataa aataagtcta ttaacatcag
     9841 tgaggtcatc ttatgaacaa tacaggtatt catcacattt caagcttggt aggaaatatt
     9901 catcaagcct atcattttta tcatcatatt ctcggcttaa aattgacctt gaaaactgtc
     9961 aatcaagaag attcaagtat gtatcatctc tttttcggtg atgaagaggg tcgctttgga
    10021 acggaattta ccatttttga tatgcccaat catcctagtc atcgaccagg cagcaatcgt
    10081 ttggaacgaa ccgtttttct ggttaaagat tttgctgcct tggaattctg gcagaaaaga
    10141 ctgacagagt ttgaagtgga gaatgaagga attcaggctt ttggaaatgg gcatattctg
    10201 aatttccaag atgaagatgg acagctgctt ggcttgacct atcataacgc tatcggagaa
    10261 atgtttccgt ataaaacaga tgaaattccg tcggaatatg ctattcttgg catcgccagt
    10321 ctacatatgc ggattcgtga agaaaaggag ttgttatctt tgctgacaga aaccttcgga
    10381 tttgttgagg aaagtcgatt tgtctttgag gataagatgg tgatttctct tctctttgac
    10441 aacaccttcc agcatcgcct ttatttgatt ttagaccaag agtctccaat cagtgtattg
    10501 ggagtcgggg ccattcatca tatcgcattt ggtgtcttag atgagtccga cttggaagac
    10561 ctgattagtc gcttaaatct catcaatcgt ccacattctg gtatcattaa tcgagatttc
    10621 attcattcct tgtacttccg agcgccaaat taccttatgt ttgaggtggc aaccatgact
    10681 ggtgagcgcg aatcggaaat gccagctcag aatgaagagt tggatcaggt agacctattt
    10741 ttgccaagtt tctttgaaga ggatagacag gaaatcgaaa aaaatctctc ccaacgttat
    10801 taggagaaat gagatatgga ttatcgcttt atcaaaggga ccagtccccg tcttttggtc
    10861 tttttccacg gcacaggtgg caacaaggaa tccatgctct ttctccgcca acagctggat
    10921 ccaaaagctt ctgtcctttc cttggaggga agttggggtc aaggcaggaa aaggcgtttc
    10981 tttgccccgc tgatcgatgg tcagctggat cttgtcgatg ttgaaatgcg cttgtcggct
    11041 tttctggatt tttggcagga cttagacatt cagccctacc agcagattac ctttgttgga
    11101 ttttcaaatg gtgccaactt tatcatggac ttgttaacca agcagtcaaa cctggcggac
    11161 aattatatct tgctccaccc ttcagcttta gattatgctt ttcctatgga aaatagcaga
    11221 gcagaggtat tatttacact ggggcagaat gaccaactcg tcgaccaagt cgctcttgaa
    11281 catcttgtag atgactggcg agtgtcagct tttcacaaag ccaacttagt ttgttttgat
    11341 aagggacatt ttttaagtca ggatgaattg acctatatca aaaattggta tcaggaaaga
    11401 atagacaaaa agacctgaac aaataagttc aagtctttta tgtgtcttag attagtgttt
    11461 ccagtttatc caccaaggaa ccaatatagg cgatggtttc tttaagtggt tggtcagttg
    11521 aaacgtcaac acctgcgtgc ttagcaaggt cttgggcaga aagacttgca ccgagtgaca
    11581 aggtttccaa ccatttttca acaacttctt caggatgttc ttctaattgt ttcgccatag
    11641 ccgtaccgat ggtcaaacca gctgagtagg tatatggata caacccaatg tagtagtgcg
    11701 gttgacgcat ccagataaga cctgcatcgt caccaatttc aaagtcgttg ccccagaatt
    11761 ccttgatgac atccaacttg atttggcaga gaatatcacc attgaggtat tcttcattgt
    11821 ccaaacgagt gtagacttca cgttggaagg ctgcttcaag caagtgagtg accatgttgt
    11881 ggaagtaagt acggctgatc aactcgctaa tcaagtaagc ctggaagcca ggatcttggt
    11941 tgtttttcaa aagggtgtta catgttaaga cttcgttagc agtagaaggc gcctcgatga
    12001 agtagaggga tggatcgtag ctgagaacgc tttgtttctt agccaattgg aaatgaccag
    12061 catgtcccaa ttcgtgagcc aataccaaga cctcgttcat caagcctgtc catgaaagta
    12121 agatgtaaga tggtccatca taaagagtag cacagaagcc accagtagcc ttaccttcgt
    12181 tttgagcaaa gtcaatccaa cgctcatcaa atgattgttc aatcattttc acataatctt
    12241 caccaagaat gcccaggcag tcaatcaaga attgtttgga ttcttcagga gtgatgcgtt
    12301 ggttgtattc agatggcaag ctgattttca agtcagcatg agtgatttta tccaaaccat
    12361 gagccttggc aaccaatttc acatagcgac gcatgtgagg ggccaattcc ttcatgatga
    12421 catcaatctg acggtcgaag agatcacgag agacattttg actatgcaag aggaagtcaa
    12481 tggtattgtc aaatccacgc aagcgagctt caatttgctc attcttgata tgagataaat
    12541 aagtcgctgc agtagtattc ttgtattttt tcaaggttga atagaaacca gcagctgaat
    12601 tacgacggat ttcggtatca tggctgagct cataatcatt ttcaaagaga acatagctat
    12661 tgccgagtgt ttgaccattt gcctcgaagt tgtcaaaggt catatcctca aacttggtca
    12721 caccgtagtt gttatagggc tgaccaaatg ttggtgcaaa atttgataaa agttcttctt
    12781 gaagtgggtg cagttgatgc ggcttgtcac ggagaatacc atcaaagaat gcagcccatt
    12841 gtggttgttc ttcttttaat tcaagaagaa aggcttcatc taattgccca agttctgaat
    12901 agaggaaatc tcgttgagga cgtgccttgg cagaaacgag gtcgtattcg ttggccaggc
    12961 tcgccaattc agtattcatc ttatcgactt ccaaaggaag gaaggcatag tgggaaagtc
    13021 tgctatcaag aataacgatt ttttcgtatt ctgttaaggc ggaaacgatg gtatccttat
    13081 cagttagctt tcctttgtaa ttcgattcga aagctgtcac ttgcttagcg taggctgcta
    13141 aattttcttt gtagttgtca ggggtcggaa ataaaatgtc cgtatcccag gttaattgca
    13201 catcaatttc ttgacgttta ggcattgcgt ttgtcatgat tttctcctta tttcatttta
    13261 ataggtccat tatatcatac taaagggctt tcagcgaaaa taagccaagg caaaatttat
    13321 gaaaaagaat acttgacaaa atacacaaaa acctagataa tgtaagtatg aaagggttta
    13381 ctgaaaacca gaaaggagct tttatgcaag tcattaaacg tagtggagag attgttgaat
    13441 ttgacccaga taaaatctac caagccatca ttaaagctgc acagacagtt tatgtcattg
    13501 atgaaacttg gcggaaaaat cttgctcagg tcacaaagaa agtagtgctt gacttggaag
    13561 aagctcatac agagcgacca acgattagca tggttcagtc gcaagttgaa caccgtcttt
    13621 tagatgcagg gtatatttct attgctgagc attacatttc ctatcgcttg caacgtgatt
    13681 tggaacgtaa cggctatggc gataagatta ttgtacatct gcgttttgaa caagtacgtt
    13741 aagagaaacc tagagaaatc taggtttttt gcttttatat atctttacat tgtttaaaga
    13801 aaatagcatt ttaaaaactt tttgaaaaaa atgtgatatt ctgagcaaaa attttgtaat
    13861 cggtatcatt tttagtgtat aatagacttt gtaaaaaaat atattttcga aagtgagatt
    13921 tcacattatg gctaaaatcg ttgttgtcgg tgctaaccat gctggtactg ccgcaatcaa
    13981 aactatgttg acaaattatg gtcaagaaaa cgaaatcgtt gtatttgacc aaaactcaaa
    14041 tatttcattc ttgggttgtg gtatggcttt gtggattggt gagcaaattg gcggtcctga
    14101 aggacttttc tactcaaaca aagaagagtt ggagagcttg ggcgcgacag tatacatgga
    14161 gtcacctgtt acaaatattg actacgatgc aaaaacagtt actgcacttg taaatggtca
    14221 agaacatgtt gaatcatttg aaaaacttct tttcgcaact ggttcacaac ctatcttgcc
    14281 accaatcaaa ggagctgaaa tcaaagaagg ttctcttgaa tttgaagcaa ctcttgaaaa
    14341 cttgcaattc gtaaaattgt accaaaactc agcagatgtt attgaaaaat tgaaaaacaa
    14401 agacatcaac cgcgtagcag tagttggtgc tggttacatc ggtgttgagc ttgcggaagc
    14461 attccaacgt aaaggtaaag aagttatcct tatcgacgtt gtagatacat gtttggctgg
    14521 ttactatgac cgcgacttgt cagaccttat ggctaaaaac ttggaagagc atggtattca
    14581 acttgccttt ggcgaaactg ttaaagaagt tgcgggtaat ggtaaagttg agaaaatcat
    14641 cactgacaag aacgaatacg atgttgacat ggttatcttg gctgttggtt tccgtccaaa
    14701 cactgcattt gcaggtgaag gaatcgagcg tttccgtaac ggtgccttcc ttgtaaacaa
    14761 acgtcaagaa acttcaatcc caggcgttta cgctatcggt gactgtgcaa ctatctacga
    14821 caacgctact ggcgacacaa gctacatcgc tttggcttca aacgcagtac gtactggtat
    14881 cgtagcagct cacaacatct gtggtactga ccttgaaggt atcggtgtac aaggttctaa
    14941 cggtatctct atctacggtc ttaaccttgt atcaacaggt ttgacacttg aaaaagctac
    15001 tcgtcttggt ttgaacgctg ctgttactga agtaactgat aaccaaaaac cagaattcat
    15061 ggaacatggt aacttcccag taactatcaa gattgtttac gataaagatt cacgtcgtat
    15121 tcttggtgcg caaatggctg ctcgtgaaga catctcattg ggtatccacc tcttctcatt
    15181 ggcaatccaa gaaggtgtaa caatcgaaaa attggcattg acagacttgt tcttcttgcc
    15241 acacttcaac aaaccataca actacatcac agtagctgcc ttgggtgctg aataatcaat
    15301 tgaatacaaa agctcagaga tgcctctggg cttttttagt aaaaattgaa attatattta
    15361 aaaatatcaa aaaaacttga atttaatttt taaaaatggt aaaattttag aaattcaaaa
    15421 acaaaagagg tgtttttatg tacaaaagac tagaaattgt gagttattct gattttgata
    15481 attatgaagc ggaatatcaa aaacgctttg atagtctagc taccataaaa acaggattga
    15541 caatcaatcc tttttcaaag agggaacaaa gaaggttggc agataaacac caattgttct
    15601 atgtattgct tccgaaccat gtcatggata ttgaaaagat ttataaaaat agccaacttc
    15661 tttctaattt tgatttatca agcgttcaga tgcaaaagct attctatttg caaatcattg
    15721 atgaaatcca aagtaccaat gatatggaag gagtcaaatc tactcgtaaa gaaataaagg
    15781 aggcatataa ctctctagat aaaaataaaa ggttttctgg aatcgtttcg atgtaccatt
    15841 ctattttgaa aaatgaattt gagaaaatag attctttgtc taaatttaga aatatttatg
    15901 atcaattatt tttagatgag atgtcagaag atgaaaagcc tgatggagag ctttttagaa
    15961 aaaaagtgat ttatgtcgga gatggaaatt cctatgttca ccaaggaaat tcctcggagt
    16021 tttcgattaa tgaagattta acgaagttaa tcatttttat gaacaatccg gagattcctc
    16081 ttattatcaa atcaattatt acgcactatt tttttgagta tgtacatccc ttctatgatg
    16141 gaaatggtag aatggggcgt ttcctaatgt catcctatct gtctagaaaa ttagattttt
    16201 taacagggtt gtctctgtcg gagtctgttt tgcaaaataa gagtaagtat gaggagggtt
    16261 tctcaattac ttctcaccct aaaaatagag gtgatttgac cccgtttgta gggaccatgc
    16321 tagaaatcat tttaaatgca caagagaaca tgaagactaa gttgggcaag ttgaagtcac
    16381 aattagatag agtgtggatc ttgatagatg gtctagacct gacgggacct caaaaagaat
    16441 tgttgtttat actttcccaa gataagcttt ttgatgtttt gcatactggc gtcagcaaca
    16501 aggaattaac ggaagcattt ggcggaaaat acaaaaggac gagaattgat tctactctga
    16561 aaacactgga aggaatgggc ttagtgacaa aagtgaaatc atccccagtc atttatgaag
    16621 ttagttctaa tttgataaaa gatatttaat agcaccggcc tcggctgggc ttttttggct
    16681 gttctccatc attttgcacc tgcctatcga gagaattttt ggtataatgg agggtatgat
    16741 tataatgaac ctgtatttac agtttagcac tttcatctaa gcctagtttt tcagctattt
    16801 atcgtttgtt tttccaaaaa tacagtcggt atttcctcaa aaaattacct tgattagcta
    16861 taaacgattt cctatttgaa agtgaattac ttgtaaatac atgttctagg aaagtatgag
    16921 aaaatgaacc cattattaaa cggaatgaat gacagacagg cagaagcggt acagacgacg
    16981 gaaggtccgc ttttgattat ggcaggggct ggttcgggta agacgcgagt cctgacccac
    17041 cgtatcgctt atttgattga tgaaaaaatg gtcaatcctt ggaatatcct agccattacc
    17101 tttactaaca aagcggcgcg tgagatgaag gagcgggcct atgccctcaa tcctgctacg
    17161 caagattgct tgattgctac cttccactcc atgtgtgtgc ggattttacg ccgagatgct
    17221 gatcatatcg gctacaatcg caattttacc attgtcgatc caggtgagca acgcagtctc
    17281 atgaaacgga ttttgaaaaa tctgaattta gatccgaaaa agtggagtga acgttctatc
    17341 ctgggaacca tttccaatgc caaaaatgac ttgattgatg acaaggcatt tgaagcccag
    17401 gcaggcgacc tatacacgca gattgttgct aaatgctaca cggcttatca aaaggaacta
    17461 agacagtcag aggccgttga ctttgatgat ttgatcatgt tgacgctccg cctttttgac
    17521 caaaatccag aggtcctgac ctattaccag cagaaattcc agtatatcca tgtcgatgag
    17581 tatcaggata ccaaccatgc ccagtaccaa ttagtcaagc tcctggcatc acgtttcaag
    17641 aatatctgcg tggtcggaga tgcggaccag tctatctatg gttggcgtgg tgcggatatg
    17701 caaaatatcc tggactttga aaaggactat ccagaaagta aggttgtgct tttggaggaa
    17761 aactatcgtt cgaccaagaa cgtcttgcag gctgccaatg aggtcatcga aaacaaccgc
    17821 aatcgccgtc caaaaaaact ctggacacag aatgcccaag gggatttgat tacctactat
    17881 cgtgcaagag atgaaaatga cgaggcgatt tttgtcgcag ggcagattga ccagttgcac
    17941 cgagaaggta aggcctataa ggattttgca gttctctacc gtaccaatgc ccaatcccgt
    18001 accattgaag aagccctgct caaatctaat atcccttata ccatggttgg cggcaccaag
    18061 ttctacagcc gtaaggaaat tcgagatgtg atttcttatt tgaatatcat cgcaaatcca
    18121 tcggataata tctcttatga acgcattgtc aatgagccaa aacgtggcgt tggccctggt
    18181 acggttgaca aactccgtga ttttgcgacc agccacagca tgtccttgct agaagcttct
    18241 caggatatta tgttgtcacc agtcaagggc aaggcagcac aggcagtctt tgacttagct
    18301 aatctcctct ataatcttcg caatcaatta gacaacttga ctgttaccca agtagtcgag
    18361 gcagtattga atcaaacagg ctacatcgat gcccttgcag cacaaaatac gctggaagca
    18421 aatgcccgca ttgaaaacat ccaggaattc ctgtctgtta ccaaaaactt tgatgaaaag
    18481 gatgttgagg aagaagagac aggtctggat cggttgacac gcttcctgct tgatttggcc
    18541 ctgattgctg acacagatga tggcgataca gaatcttcag aagtgactct tatgaccctc
    18601 cacgcagcca aaggtctgga atttccagtc gtattcctga ttggtatgga ggaaaatgtc
    18661 ttcccactta gtcgtgcagc agaagaagag gacgaattgg aagaagaacg tcgtttggct
    18721 tacgtaggca tcacccgtgc tgagcagact ctctacctga ccaatgccaa ttctcgactc
    18781 cttttcggtc gcaccaacta caaccaacca agccgcttta tccgagaaat ttccagtgac
    18841 ttgcttgatt atcaagggct cgctcgtcca gccaatacta gctttaaggc ttcttatgtc
    18901 aatggcagag cgacacagtt tggacaaggc atgagcttgc aacaagcctt acaaagtcga
    18961 aaagcatccg tacaaccatc agccaagctc ggaggaagta tgcccttcgc atcaagcaac
    19021 cgatcgtcaa gctcaggcac caactggtca gttggtgaca tcgcagtcca caagaaatgg
    19081 ggacgcggga cagtccttga agtatcaggc tcaggcagca accaagaact caaaatcaat
    19141 ttcccagaaa tgggcctcaa aaaagtcttg gcaagcttag caccgattag taaggaagat
    19201 taaatttagt taaaaaacaa ttgcagtaag ctcgaaaata tgataaagta tttttgtaaa
    19261 attgaataga acatttgggg tgccaagagg ctgagattat acccatcgaa cctgatgcag
    19321 ttaggactgc cgaagggaaa tgtgtatcaa caaattttgt tgacaagtac tatatttgta
    19381 ttctagtata gaatactgta tttactggtc atcaatcatc gtaggtgtaa ctccatttga
    19441 taaaccatca gatggagttt tttctattgt cgaatgaaga gctttcagaa aaaggaactg
    19501 agtgcaggta gcttgaccag cctagaggct atactacgtt ggaaatgaga catgcgcaac
    19561 atgtcacttt cgtagagttc ggcaaggcga aactgatgat aaagctaata caattaacaa
    19621 tatcttcaca aatacctcaa acccttcaat ttacattttc accgagaaaa agagaaagga
    19681 gatatagatg aacaaaatgg tcatttggtt tgaccttgat ggcgttattt ttgattccta
    19741 tgatgtctgg gaccaggtgg ttcaagggat tttgaaactt cacggagttg cgtataccca
    19801 gcagataaag gaagaacttt ggcggattcc aatggaagat gtcaacgcgt atttattgca
    19861 acttgtggag aattccttag atgagaatga gcttgaaagg caaaaaatga atcaactgca
    19921 atcactatat agagatattt ccttgatgga tggtgtgcat gaacttttat ctacattgaa
    19981 ggcaaaaggt gcagtcatgt acgcagtcac ttcaaactat ctggagctgg ctgaactagg
    20041 attgtcatcc catcatctat ctaactattt tgtgaaacta tttagcagtt tggatctgtt
    20101 tggaagcgat aaaaataggg agttttacca attcatccta catcaggaac agatagatcc
    20161 agccaatatc gtaatggtcg aggataatat gaacaatctt cgtattggac acgagttagg
    20221 aatagcggga gtttatatag aacatccaaa ttcccctttt tctgatgaga atacaggtat
    20281 agttagcatc aagcaattaa gtgaattaat accaattttg gaggatagaa aatgacatct
    20341 ttacatgtag cattatcaat agcaggaaca gatccaacag gcggagcagg cattatggct
    20401 gatttgaaga gctttcaggc tagatcagtt tatggtatgg cagtcgtgac gagtgtcgtt
    20461 gctcaaaata ccaaaggggt gcaactaatt cgtcatcttg atcaggaaat tttagaagaa
    20521 caattgaaaa gtgtctttca ggacattgtt ccagatgcaa taaaaactgg aatgttagca
    20581 caagtcgaga ccattgagct tgtcgcaagc tatcttgcaa aacagaagtg tccatatgtc
    20641 ttggatcctg ttatggtcgc aacgagtgga gaccgtttga ttgaagagga tgcaatccaa
    20701 gcgctgaaaa caaaattact gccccttgct accatcatta caccgaatct accggaagca
    20761 gaagttctag tcggtagaac actgaaaagt gaaaatgaca tcatgaatgc gggccgttgg
    20821 attcggaaag aatttgggtt aaaaaatgtg gtcattaagg gtggtcatct ggcaaaggcg
    20881 gcatctgact acttattttt agaagatggt gagattagtg tcatcagttc agcacgcatt
    20941 tctacgaacc atacccatgg tacaggttgt acctacgcgg cagtcattac tgcagagttg
    21001 gcgaaaggtc ggacagtagc aaaagcagtc gaaactgcca aacgatttat tacagaagca
    21061 attcagactg ctccagaact ggggcatgga aatggtcctg tcaatcatac cacctacaga
    21121 ggagagtaac tagatgtatt tggaaaaatt acgtagtcaa aatcccttga ccatttgtat
    21181 tacgaatgat gtagtcaaaa attttacagc taatggctta cttgctctcg gtgcctcacc
    21241 tgcaatgagc gagtatccag aagatttgga ggatctactt ccctatgcaa aggggttatt
    21301 gattaataca ggaaccttga ccaatgaaac ttgggaacta tacaaatctg ccttggatat
    21361 tgctgagaaa tatggtgtac ctactgtctt agatcctgtt gcggcaggtg ctggtgccta
    21421 tcgcaagaaa gttaccttgg atctgttaca tcatcatact atttcactcg ttcgtgggaa
    21481 tgcaggagaa attgcagcct tgattggtga aagtattgaa acgaaagggg tagattctgc
    21541 tcagattgac aatgtaggtg aacttgctct cagagctaac caacaattag gaattcctgt
    21601 tgtgattaca ggaaaaaaag atgctgccgc tgtgaatcat caggttcgga ttttggaaaa
    21661 tggtagtgag ttaatgccac tagtgacagg gacaggatgc ctactgggag cagttctggc
    21721 tgcctctatt cacctggctg atgaggattc attattggat tgtttggaag aggtcctatc
    21781 ggcttattcg atcgctggag aaatggcaga gcagaaaacc ttactaccag gaaccttcca
    21841 gattgagttt ataaatagcc tctatgctat tcaatcagaa gaggttgaag aaaataaaaa
    21901 ggtcattcag tatgaataga aaaatgcttc aagtttactt tatttgtggc acgtcagatt
    21961 gtccaaaagg caaatttttg gatgtactgg aaaaggcatt gcaggcagga atcacttgtt
    22021 ttcaatttcg tgaaaaaggt gagcaaggtt taacaggggc tgataaacta ctgttggcaa
    22081 aacaagttca acacctgtgt caccgctatc aggttccatt aatcattaat gatgatgttg
    22141 agttagcacg tgccattgat gctgatggaa tacaccttgg acaggaagat ttgtcagtag
    22201 tagaagcgag acagctcttc ccagggaaaa taattggact atcagttgga acaaaagaag
    22261 aatacctcaa ttcgcctatt gatctagttg attatatcgg aagcggacct gtttttccta
    22321 ctctatctaa ggatgatgct agcccagcca ttggaatgga tggattaaag caattaagga
    22381 aactcaattc cgatattccc atggttgcga taggagggtt atctgctaaa gattgtaagg
    22441 aagttctcca agcaggtgca gatggcatag ctgttatctc agccatttcc catgctgaag
    22501 acccctacaa agcaaccaag atattggtgg atgggatgca agcaatgatt ttaaaattta
    22561 atcaagtaga atctaataaa caaatactaa aaagtcccta atca
//
LOCUS       DASFRC010000015        22103 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.015, whole genome shotgun sequence.
ACCESSION   DASFRC010000015 DASFRC010000000
VERSION     DASFRC010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 22103)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22103)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22103
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.015"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..1332
                     /gene="celB"
                     /locus_tag="U1087_000421"
     CDS             <1..1332
                     /gene="celB"
                     /locus_tag="U1087_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS cellobiose transporter subunit IIC"
                     /protein_id="HEM4754936.1"
                     /translation="FFGLLDKYLMGPMGKLASYKVVRAITAAGMAAVPFTIVGSMFLV
                     FSILPQAFSFWPIVSDIFAASFDKFTPLYMVANTATMGVLSLYFALAIGYELTKIYAE
                     EEELNLTPLNGALLSLFAFIMTVPQIIFENGAMSAVTSLKEGAVVVDGWAMGGGVTRF
                     GTTGIFTAIIMAVAAVLLYRMCVKNNWVIKMPESVPEGVSRGFTALIPSFVVAFFVIF
                     LNGVLVALGTDIFKVIAIPFSFVGNLTNTWIGLVIIYLLTQALWVVGIHGANIIFAFV
                     SPIALANMSLNAAGERMIVAGEFSNMFVIAGGSGATLGLCIWLATRARSEQLSAIGKA
                     AIVPGIFNINEPLIFGLPIIYNPALAIPFMLAPIASMTVYYFSMKLNLINAVVAQVPW
                     PTPVGIGAFLGTADWRAIVVSIVCAVVVFLVYYPFIRAYDKQLLKEEAANA"
     gene            1738..3204
                     /gene="ascB"
                     /locus_tag="U1087_000422"
     CDS             1738..3204
                     /gene="ascB"
                     /locus_tag="U1087_000422"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HEM4754937.1"
                     /translation="MTKQFPKGFLWGGATAANQYEGGWNLGGRGPATSDTYIAVDPDK
                     RKDMSHFGKPVSRADVEFALADQEGLYPKRWGSDFYHRYKEDIALFAEMGFKTFRLSI
                     AWSRIFPKGDELEPNEEGLAFYDAVFDNLNKYGIEPLVTLSHYEFPIHLALEYGGWKN
                     RKVIEFFVRYAETVFKRYQGKVKYWLTFNEINILGMVGYLSGGLLFEDGKNDLEAMYQ
                     AVHHQFIASILATKAAHEIDPENKVGCMLARMENYAATCNPDDVLAALKKDQENLFYT
                     DVQVRGAYPSYMKRFFKENNIQVVFEPGDEAILKQYPVDFMSFSYYMTSITRALPDKD
                     KATAGNLMLGEANPYLEASDWGWQIDPVGLRITLNKLYDRYQVPLFIVENGLGALDKV
                     EEDGSIEDSYRIAYLEKHIQQMYEAIEDGVELMGYTPWGCIDLVSASTSEMSKRYGFI
                     YVDADDQGKGSFDRSRKASFYWYKDVIASNGANLLTEK"
     gene            3213..3815
                     /locus_tag="U1087_000423"
     CDS             3213..3815
                     /locus_tag="U1087_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM4754938.1"
                     /translation="MTKTIYLMRHGETLFNTQKRVQGWSDFPLTERGIVQAQAVGQYF
                     KEQGIIFTSAYSSTQERATDTLKLVTDAPYQQLKGLKEMNFGIFEAREEELLPKPRPG
                     ARSFEDLLVPFGGEDIRAVGSRVKEAILSVAESDPADPILMVSHGAAIWGLVQVLEVT
                     FPPGVFLPNCAICQLTVEQNQIRFEKLIDSAHDFKVYDFK"
     gene            3827..4444
                     /locus_tag="U1087_000424"
                     /pseudo
     CDS             3827..4444
                     /locus_tag="U1087_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937720.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
     gene            4441..5877
                     /locus_tag="U1087_000425"
     CDS             4441..5877
                     /locus_tag="U1087_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HEM4754939.1"
                     /translation="MTRKVFPKGFLWGGATAANQCEGAYDVDGRGLANVDVVPIGEDR
                     AAIITGRKKMFDFEDGYFYPAKESIDMYHHFKEDIALFGEMGFKTYRLSIAWSRIFPK
                     GDELEPNEKGLQFYEDLFKECHKYGIEPLVTITPFDCPMHLIETYGGWRNRKMLEFYE
                     RLCRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGICFEEGENVEQVKYQAAHHELVA
                     SAIATKLAHEIDPENKVGCMLAAGQYYPHTCHPRDVWEALQEDRENYFFIDVQARGYY
                     PNYAKKKWEREGIEIEMTDQDLALLKEHTVDFISFSYYSSRVASGDPAEKEKTAGNIF
                     ASIKNPYLDASEWGWQIDPLGFRITLNTIWDRYQKPLFVVENGLGAVDIPDENGYVED
                     DYRIDYLRQHVLAMRDAIVEDGVELLGYTTWGCIDLVSAGTGEMKKRYGFIYVDRDNE
                     GNGTLKRSKKKSFEWYKKVIATNGADVG"
     gene            5961..6950
                     /locus_tag="U1087_000426"
     CDS             5961..6950
                     /locus_tag="U1087_000426"
                     /EC_number="6.3.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014677692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate--protein ligase"
                     /protein_id="HEM4754940.1"
                     /translation="MKYIVNNSNDPAYNIALEAYAFKELTDIDEIFILWINEPAIIIG
                     KHQNAIEEINKEFTDEKGIHVVRRLSGGGAVYHDLNNLNYTIISNKADEGAFDFKTFS
                     KPVIDTLATLGVEANFTGRNDLEIDGKKICGNAQAYAKGRMMHHGCLLFDVDMSVLAN
                     ALKVSKDKIESKGVKSVRARVTNINNELPEKMTVLEFKDAILNQMKQEYPDMDEYVLS
                     EDDLARIQEIRDTQFATWDWTYGQTPEYTVERSVRYPAGKITTYIKAEKSVIESIKIY
                     GDFFGIGDVSDIEDLLVGTRYEYADVLAKLQEIDTTHYFSRMTTEEVAKAIVA"
     gene            7122..7412
                     /locus_tag="U1087_000427"
     CDS             7122..7412
                     /locus_tag="U1087_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018030687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HEM4754941.1"
                     /translation="MAKYEILYIIRPNIEEEAKNALVARFDSILTDNGATIVESKAWE
                     KRRLAYEIKDFREGLYHIVNVEANNDEALKEFDRLSKINGDILRHMIVKLDA"
     gene            7424..7918
                     /locus_tag="U1087_000428"
     CDS             7424..7918
                     /locus_tag="U1087_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEM4754942.1"
                     /translation="MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGER
                     EADFINVVIWRQQAENLANWAKKGALIGVTGRIQTRSYDNQQGQRVYVTEVVAESFQL
                     LESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
                     DLPF"
     gene            7951..8190
                     /locus_tag="U1087_000429"
     CDS             7951..8190
                     /locus_tag="U1087_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002983142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HEM4754943.1"
                     /translation="MAQQRRGGFKRRKKVDYIAANKIEYVDYKDTELLSRFISERGKI
                     LPRRVTGTSAKNQRKVTTAIKRARVMALLPFVNED"
     gene            complement(8425..9081)
                     /locus_tag="U1087_000430"
     CDS             complement(8425..9081)
                     /locus_tag="U1087_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1129 domain-containing protein"
                     /protein_id="HEM4754944.1"
                     /translation="MSFTEINGLTKKNQEFIHIATNQLIKDGKSDSEIKELLEEILPT
                     IIEKQKTGVTARNLYGAPSEWAASKTISEQEKKDQVEYNENPWLMWLDSSLFMLAIIA
                     GINGLMNLFGQGAQYGLLTLFVIGFGVGAGMYLMYHFVYREQIKTGQRPKLLKAIAFL
                     GLATLAWSVVFILAALIPAAFNPVLPPLVTILIGAAAFGARYLLKKKYNIRNAMSPVQ
                     "
     gene            complement(9097..10041)
                     /locus_tag="U1087_000431"
     CDS             complement(9097..10041)
                     /locus_tag="U1087_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004250490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEM4754945.1"
                     /translation="MKQIFLSTMTDLEEIQTFEPGAWINLVNPSQSESMEVAEHYKID
                     IADLRAPLDAEESSRITVEDDYTLILVDVPILEERNNKTYYITIPLGIILTDDAIITT
                     CLEPLPLFEQFIHRRLRNFFTFMKSRFVFQILYRNAQLYLSALRTIDRKSEEIEKQLH
                     EATRNEELIVLMELEKTIVYFKASLKTNERLVKKLASSSRLLRKYEEDEDLLEDTLVE
                     TQQAIEMADIYGSILNSMTHAFASIISNNQNTIMKTLALVTIVLSIPTMVFSAYGMNF
                     KDNIIPFNDIPYAFWWIILFAFAISLSLTFYFIRKRWF"
     gene            10835..13660
                     /gene="uvrA"
                     /locus_tag="U1087_000432"
     CDS             10835..13660
                     /gene="uvrA"
                     /locus_tag="U1087_000432"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003037804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HEM4754946.1"
                     /translation="MQENIVIHGARAHNLKNIDVTIPREKLVVVTGLSGSGKSSLAFD
                     TLYAEGQRRYVESLSAYARQFLGNMDKPDVDSIEGLSPAISIDQKTTSRNPRSTVGTA
                     TEINDYLRLLYARVGVPYCINGHGAIAASSVEQIVDEVLELPERQRLQILAPIVRKKK
                     GQHKTIFEKIQKDGYVRVRVNGDVYDVSEVPELSKSKAHNIEVVVDRIVIKEGIRSRL
                     FDSIEAALRIADGYVIIDTMDEKELLFSEYYACPVCGFTVPELEPRLFSFNAPFGSCS
                     DCDGLGMKLEVDTDLIVPDASKTLREGALAPWNPISSNYYPQMLEQAMNHFGVDMDKP
                     FEELTDEEKNLIFNGSDGKEFHFHYENEFGGVRDIDIPFEGLITNINRRYRETNSDYT
                     RTVMKTYMNELTCGTCHGYRLNDQALSVKVGGEQGLHIGQLSDLSVADHLEVIENLTL
                     SENEATIATPIVKEIKDRLTFLNNVGLNYLTLSRAAGTLSGGESQRIRLATQIGSNLS
                     GVLYILDEPSIGLHQRDNDRLIASLKKMRDLGNTLIVVEHDEDTMREADWLIDIGPGA
                     GVFGGEIVASGTPAQVAKNKKSITGQYLSGKREIPVPLERRVGNGRFLEVTGAKENNL
                     QDVTVRFPLGKFVAVTGVSGSGKSTLVNSILKKAIAQKLNRNSDKPGKFKSISGIEHL
                     DRLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNEAKIRGYKKGRFSFNVKGGRC
                     EACSGDGIIKIEMHFLPDVFVPCEVCHGHRYNSETLEVHYKEKNIAQVLDMTVNDAVE
                     FFKHIPKIERKLRTIQDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYIL
                     DEPTTGLHTEDIAQLLKVLARFVDDGNTVLVIEHNLDVIKTADHIIDMGPEGGVGGGT
                     VVATGTPEEVAENPASFTGQYLKMKLK"
     gene            13759..14820
                     /locus_tag="U1087_000433"
     CDS             13759..14820
                     /locus_tag="U1087_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011836519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HEM4754947.1"
                     /translation="MQKRLEKFEAKLAQSTVDGILVTGQNNIYYLTGFWGTEATVFIS
                     GKRRLFVTDSRYTLIAKASVKGFDIIESRFALEEIAKVIKEDGLEKIGFDSEVTYGFY
                     QSLTSIFEGYQLVAMSNFIEDLRMIKDEKEIATIRRACQISDQAFIDVLDFIKPGQTT
                     EMDINHFLDHRMRQLGAEGASFEFIVASGYRSAMPHGRASEKVIQAGETLTLDFGCYY
                     QHYVSDMTRTIHIGHVTDQEREIYDVVLRANKALIEQAKEGVTYREFDAIPREIINEA
                     GYGANFTHGIGHGIGLDIHEYPYFGKSDEPIKAGMVLTDEPGIYLDDKYGVRIEDDLL
                     ITETGCEVLTLAPKELIVI"
     gene            14885..15442
                     /gene="efp"
                     /locus_tag="U1087_000434"
     CDS             14885..15442
                     /gene="efp"
                     /locus_tag="U1087_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000568636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HEM4754948.1"
                     /translation="MIEASKLRAGMTFETEGKLIKVLEASHHKPGKGNTIMRMKLRDV
                     RTGSTFDTTYRPDEKFEQAIIETVPAQYLYQMDDTAFFMNTETYDQYEIPVATIKEEL
                     LYILENSDVKIQFYGTEVIGVTVPTTVELVVAETQPSIKGATVTGSGKPATMETGLVV
                     NVPDFIEAGQKLVINTAEGTYVSRA"
     gene            15469..15861
                     /locus_tag="U1087_000435"
     CDS             15469..15861
                     /locus_tag="U1087_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp23/Gls24 family envelope stress response
                     protein"
                     /protein_id="HEM4754949.1"
                     /translation="MTTEYQGEIVIAPRVLEVITGIAAAKVEGVHSLHNKRVADTWSK
                     SSLNKGVYLQTDDEGKVTADIYVYLEYGVNVPAVSMDIQRAVKTAIYNYAEVEVTAVN
                     IHVNGIVPDKTPKPALKDLFGEDFLDEE"
     gene            15851..16270
                     /gene="nusB"
                     /locus_tag="U1087_000436"
     CDS             15851..16270
                     /gene="nusB"
                     /locus_tag="U1087_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HEM4754950.1"
                     /translation="MKNNRHALRKCALQAIVSLEFGQEPVQAAQFSYLYDREDEQEGV
                     EIPLFLLNLVNGVADYREDLDKELSSRLKAGWTLDRLTLIDKNIMRLGLFEILHFEET
                     PDRVAVNEAIELAKEFSDESSAKFINGVLSQFIKEEA"
     gene            complement(16350..17315)
                     /locus_tag="U1087_000437"
     CDS             complement(16350..17315)
                     /locus_tag="U1087_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002929307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM4754951.1"
                     /translation="MVAKLTDVAQLAGVSPTTVSRVINKKGYLSEKTIRNVEEAMREL
                     GYKPNNLARSLQGKSAKLVGLIFPTINNIFYSELISHLEKELFDRGYKTIICNSQHES
                     DKEREYLEMLAANQVDGIISGSHNLGIQDYDRVVAPIIAFDRNLSPSIPIVSSDNFAG
                     GVLAAQTLQKAGCHNPLMITGNDDSNSPTGLRQVGFTSILNKAEVFHISSDFSPVRKE
                     MEIRAILEKQKPDGIFVSGDATAMLVWNVIRSMKLSIPEDIKLIGYDGTSFIENYYPQ
                     LTTIKQPLTEIARLLVELLVDKIEGKKLTKTDYILPISLLAGASI"
     gene            complement(17296..18750)
                     /locus_tag="U1087_000438"
     CDS             complement(17296..18750)
                     /locus_tag="U1087_000438"
                     /EC_number="3.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000455313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sucrose-6-phosphate hydrolase"
                     /protein_id="HEM4754952.1"
                     /translation="MAFTTEERYRAYADWTPEYIEKIKKNTESSPWRTNFHIETPHGL
                     LNDPNGFSYFNGKWTLFYQYFPFGAAHGLKSWVHTESTDLVHFEETGTVMYPDTPLDS
                     HGAYSGSAMEFGDKLFLFYTGNVRDENWVRHPYQIGALMDKDGKIEKIDKVLIEQPED
                     TTDHFRDPQIFNYKGQYYAIVGGQNLDKKGIVKLYKAENNDYLNWSYVGDLDFANDMT
                     AYMMECPNIAFVGEQPILLYCPQGLDKEVLDYGNIYPNMYKIGQSFDPETASIVEPIE
                     LINLDYGFECYATQAFNAPDGRTLSVSWLALPDVEYPTDAYDYQGCLSLVKELTIKDG
                     KLYQYPVDAITSLRKEAQPFSAQKETNNVYELELDFSAGTKHEIVLFANEAEKGLVLS
                     VDTEQGQITLDRGNCGQPFALDFGTSRSCEISPGALTANIFIDKSVFEIFINKGEKVF
                     SGRVFPDADQSGIVITTGNPTGTYYHLDYGRKTN"
     gene            18955..20880
                     /locus_tag="U1087_000439"
     CDS             18955..20880
                     /locus_tag="U1087_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS beta-glucoside transporter subunit IIBCA"
                     /protein_id="HEM4754953.1"
                     /translation="MDYKKVSAEVIEAVGKDNLVAAAHCATRLRLVLKDESKVNQKAL
                     DDNADVKGTFSTNGQYQVIIGPGDVNFVYAELIKATGLKEVSTDDLKQIAAQDKKFNP
                     LMDLIKLLSDIFVPIIPALVAGGLLMALRNFLTSPDLFGPKSIEEMYPAIQGISAMIQ
                     LMSAAPFMFLPVLVGISAAKRFGANQFLGAAIGMIMTTPDLGGKEAFWDIFGFQVAQT
                     NYAYQVIPVLAAVWLLATLEKFFHKKLPSAVDFTFTPLLSVMITGFLTFTVIGPVMLT
                     VSDAITNAIVWLYDTTGALGMSIFGGTYSLIVMTGLHQSFPAIETQLLSAYNNNGTGY
                     GDYIFVVASMANVAQGAATLAIYFLTKNAKTKGLSGSAAVSAFLGITEPALFGVNLKY
                     RFPFFCALAGSAIGALFAGLTHVIAVSLGAAGFIGFLSIKASSIPMYVVAEVIAFAAA
                     FAFTYVYGKTKASAVFADEAATASVVETSEEVEETAEIFTAQETLVSPLSGDVVALEN
                     VNDPVFSSGAMGKGLAVKPSEGVVYAPADAEVTIAFETGHAYGLKTASGAELLIHIGI
                     DTVSMNGNGFEKLVAAGDKVKAGTPIAKFDATKIAEAGLDDTTMIIVTNTADFAEVSP
                     LAEGTIAHGVEFLKVAK"
     gene            21008..21892
                     /locus_tag="U1087_000440"
     CDS             21008..21892
                     /locus_tag="U1087_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEM4754954.1"
                     /translation="MTKLYGSLEAGGTKFVCAVGDENFQVVEKTQFPTTTPYETIERT
                     VEFFKRYEDRLAGIAIGSFGPIDIDQNSQTYGYITSTPKPHWSNIDLLGLIAKEFNIP
                     FYFTTDVNSSAFGETLVRKGVKSLVYYTIGTGIGAGAIQNGEFIGGLGHTEAGHTYVA
                     LHPYDVKHEFKGMCPFHNGCLEGLAAGPSLEGRTGIRGELIELNSDVWDVQAYYIAQA
                     AVQATLLYRPQVIVFGGGVMAQEHMLNRVREKFVGLMNDYLPTPDVKEYIVTPAVAEN
                     GSATLGNFALAKQVSRNS"
BASE COUNT         6244 a         4385 c         5069 g         6405 t
ORIGIN      
        1 ttctttggac tattagataa atatctgatg ggaccaatgg gtaaactggc atcttacaaa
       61 gttgtacgtg ccatcacagc tgcaggtatg gctgccgtac catttacgat tgttggttcg
      121 atgttcttgg ttttcagtat cttaccacag gcattttcat tctggccaat cgtttcagat
      181 atttttgcgg catcttttga taaatttacc ccactctata tggttgccaa tactgctact
      241 atgggggtgc tatcacttta ttttgcactt gctattggat atgaattgac aaaaatttat
      301 gctgaggaag aagagttaaa tctaacacct ttgaacggtg cccttttatc acttttcgct
      361 ttcataatga ctgtgccaca aattatcttt gaaaatggtg ctatgtcagc agttacttca
      421 cttaaagaag gtgcagtagt tgtagatggt tgggcaatgg gtggtggcgt gacacgcttt
      481 gggacaacag gtatcttcac tgctatcata atggcggttg cagcagttct tttgtaccgc
      541 atgtgtgtaa aaaataactg ggtaattaaa atgccagaat ctgttcctga gggtgtgtct
      601 cgtggtttca ctgctttgat tccttcattt gtcgtagcct tctttgtaat tttcttgaac
      661 ggtgtattgg ttgcgcttgg tactgatata tttaaagtta ttgcaattcc atttagcttt
      721 gttggaaatt taacaaatac ttggattggt ttagttatta tctacttgtt gactcaggca
      781 ctttgggtag taggtattca cggtgcaaat atcatctttg cttttgttag tccaattgca
      841 cttgcaaata tgtctcttaa tgcagctggt gaacgaatga ttgttgcagg tgaattttca
      901 aacatgttcg tcattgcagg tggttctggt gcaacacttg gactatgtat ttggttagct
      961 actcgtgctc gttctgaaca attgagtgcg atcggtaaag cagcaattgt tccgggtatt
     1021 ttcaacatca atgaaccact gatttttggt ttgccaatca tctataatcc agcacttgca
     1081 atcccattca tgcttgctcc aattgcatct atgacggtgt attacttctc tatgaagttg
     1141 aatcttatca atgcagttgt tgctcaagta ccatggccaa ctccagttgg tattggtgcc
     1201 ttccttggta cagctgactg gcgtgcaatt gttgtttcaa ttgtttgtgc agttgttgtc
     1261 ttccttgttt actatccatt cattcgtgca tacgataaac agttgctaaa agaagaagcg
     1321 gcaaatgctt aaactaaaga aactccttga cttcttctaa gtccaaggag tttttctata
     1381 agagaatatc aggagacatt gttagataaa cataagatag tatcatattt gctttcttct
     1441 ttctaaatca gaggagctga ggtagggcaa gagaagaaga ttttttatag ctgacttgat
     1501 gaagcgacta tcaatacata tggaggctta aaaatatctc tactactttt gctaatacta
     1561 atcgatagaa aacctctccc ttgttccaag ttttaattgg gatattatct aatgttttaa
     1621 gaatagtgat aattggaaat agcatagaat agtatcagtt tggcatatta tcacgtagga
     1681 atgaagggag ttcttttgct attatatagc taataaagtc agaaggagta ttgtgctatg
     1741 acaaaacaat ttccaaaagg atttctttgg ggcggtgcga cagcggccaa ccaatatgaa
     1801 ggtggttgga atttgggagg tcgtggtcca gccacttccg atacctatat agcggtcgat
     1861 ccagataagc ggaaggatat gagtcacttt ggtaagcctg tttcgcgggc tgatgtggaa
     1921 tttgccttgg cagatcaaga agggctctac ccaaaacgtt ggggttctga tttctatcat
     1981 cgctacaagg aagacatcgc cctctttgca gaaatgggct tcaagacctt ccgcttgtcg
     2041 attgcctggt ctcgtatttt tccaaaagga gacgagttag aaccgaatga agaaggactg
     2101 gccttttatg atgcggtctt cgataatctg aataaatatg gtatcgagcc actggtgacc
     2161 ctatctcact atgaatttcc tattcatctt gctctggaat acggcggctg gaaaaaccgt
     2221 aaggtcatag agttctttgt tcgctatgcc gagacagtat tcaaacgcta tcagggtaaa
     2281 gttaagtatt ggctgacttt taatgaaatc aatattttgg gcatggttgg ttatctatca
     2341 ggcggtcttc tctttgaaga cggaaagaat gacctagaag ccatgtacca agcagttcac
     2401 catcagttta tcgcttctat tttggcaaca aaagctgccc atgagattga cccagaaaac
     2461 aaggttggtt gcatgctggc acggatggag aactatgcgg ccacctgcaa tccagacgat
     2521 gtcttggcgg ccttgaaaaa agaccaggaa aatctcttct atacagatgt gcaggtgcgt
     2581 ggagcctacc caagttatat gaaacgcttc ttcaaagaaa acaatatcca ggtcgtgttc
     2641 gagccgggag acgaagcgat tttgaaacaa tatcctgttg atttcatgag tttttcttac
     2701 tatatgacat ccatcacccg tgctcttcca gacaaggaca aggcaacggc aggtaatttg
     2761 atgttaggag aggccaatcc ttatctggaa gcatcggact ggggctggca gatagaccct
     2821 gtcggacttc gtatcaccct caacaagctt tatgaccgtt accaagttcc cctcttcatt
     2881 gtagaaaatg gtttgggagc cttggataag gtggaggaag atggcagtat tgaggacagc
     2941 taccgtattg cctatctgga aaaacatatc cagcaaatgt atgaagccat tgaagacggt
     3001 gtggaactca tgggctatac cccttggggc tgtatcgacc tagtttctgc ttctaccagc
     3061 gaaatgtcca aacgctacgg ctttatctat gtggatgcgg acgatcaagg aaagggcagt
     3121 tttgaccgtt cacggaaggc atcattctac tggtacaaag atgtcattgc cagcaatgga
     3181 gccaatctat taacagaaaa ataggaggtt ttatgacaaa aacaatttat ctcatgcgtc
     3241 atggtgaaac cctctttaat acgcaaaaac gagtgcaggg ttggtcggat tttcccttga
     3301 cagaacgtgg tatcgtccaa gcccaagccg ttggtcagta ttttaaggag cagggcatca
     3361 tcttcaccag tgcctattct tccacgcaag agagggctac tgatacgcta aaattagtca
     3421 cggatgctcc ctaccaacag ctcaaggggc tcaaggagat gaacttcggg atttttgaag
     3481 ccagagagga agaattactt cccaagcctc gtcctggagc gcgttctttc gaagacctgt
     3541 tggttccatt tggaggcgag gacattcgag cagttggaag tcgtgtcaaa gaggcgattc
     3601 tctctgtcgc ggaaagcgat ccagctgatc caatcctcat ggtcagtcat ggtgcagcca
     3661 tttggggatt ggtgcaggtt ttggaggtca ccttcccacc aggcgtcttt ctgcccaact
     3721 gtgccatttg ccagctgact gttgaacaga atcagatacg atttgaaaaa ttgattgatt
     3781 ccgcacatga ttttaaggtc tatgacttta agtagggagg tttagtatga actatcttta
     3841 cttgatgcgt catggccaga cacggttcaa cctccaagga cggattcaag gtgcttgtga
     3901 ttctcccctg acggaagaag gaaaagagca agcacgggct gctggtcggt attttcaaga
     3961 gcaggctatc tcttttgata agatttattc ttccacccaa gaacgggcct gtgatacggc
     4021 agaattggta acagggagga cggactatac ccgcttgaaa gggttgaaag aacaggattt
     4081 cggagccttc gagggtcaac aggaatacct caatcctccc ttacagggag acattggcta
     4141 cggtgattat tttgtcacct ttggaggcga atcctatcga gatgtccgaa aacgtatgga
     4201 agaaaccatt ggaggcatta tggaataagc ggacaatcaa tccgttttag tagttagcca
     4261 tggagctgcc attgcccaat ttttcagaca ggtattgaca ggttttccgc gagtgcggat
     4321 gcgaaattgt gccatactga cttttactta tgaagacggt cactacgatt tgcaaagcat
     4381 tgtggatccc gttcataaag aaactctcta tcaaaaagaa ggacaggaaa aggagaaaag
     4441 atgacaagaa aagtatttcc aaagggattt ttatggggtg gcgcgacagc agccaaccaa
     4501 tgtgaaggtg cttacgatgt agatggacgt ggccttgcca acgtcgatgt cgtgccgatt
     4561 ggcgaagacc gggctgccat tatcactggt cgtaagaaga tgtttgactt tgaggacggc
     4621 tatttctacc cagccaagga gtctattgat atgtaccatc atttcaagga ggacatcgcc
     4681 ctctttggtg aaatgggctt taaaacctat cgtctttcaa tcgcctggtc ccgtattttc
     4741 cctaagggag atgagctaga gccgaacgaa aaaggcctgc aattctacga ggacttgttc
     4801 aaggaatgcc acaagtatgg tattgagccc ttggtgacca ttaccccctt tgattgcccg
     4861 atgcacttga ttgagaccta cggtggctgg cgaaatcgca agatgcttga attttacgaa
     4921 cgcctttgtc gtacactttt cacacgttac aaaggcttgg tcaaatactg gctgaccttc
     4981 aacgaaatca acatgattct ccacgcacca tttatggggg ctggtatctg ttttgaagaa
     5041 ggtgaaaatg tggagcaggt caaataccag gcagcccacc acgagcttgt tgcctcagcc
     5101 attgccacaa aattggccca tgaaatcgat ccggaaaaca aggtcggttg tatgttggct
     5161 gcaggtcaat actacccaca cacctgccac ccacgtgatg tatgggaagc tctgcaagaa
     5221 gaccgtgaaa actatttctt catcgatgtt caggcacgtg gctactatcc aaactatgcc
     5281 aagaagaaat gggaacgtga aggtatcgag attgaaatga ccgaccaaga cctagcactc
     5341 ctgaaagagc atacggtgga ctttatttcc ttctcttact actctagccg tgtggcttct
     5401 ggagatccag cagagaaaga aaaaacagca ggcaatatct ttgcctctat aaaaaaccct
     5461 tacctagacg catcagaatg gggctggcag attgacccac tcggtttccg cattaccctc
     5521 aacaccattt gggatcgcta tcaaaaacca ctctttgtgg ttgaaaatgg tctaggtgct
     5581 gttgatatac cagatgaaaa tggctatgtg gaagacgact accgtatcga ctacctccgc
     5641 caacatgtcc tagctatgcg tgatgccatt gtcgaagacg gtgttgaact tttgggctat
     5701 actacttggg gctgtattga cctagtttct gctggaacgg gcgaaatgaa aaaacgctac
     5761 ggcttcatct atgttgaccg tgacaatgag ggaaatggca cactcaaacg ctctaagaaa
     5821 aaatcatttg aatggtataa aaaagtcatc gctacaaacg gagcggatgt gggataaaac
     5881 acgagagaca ggtcttcgga cttgtctttt gttatcgttt ccactataat aaaaattagt
     5941 taaccataaa ggagttttgc atgaaataca tcgtaaacaa cagcaatgac ccagcttata
     6001 acattgccct cgaagcctac gctttcaagg aattaacaga tattgacgaa atttttattc
     6061 tctggattaa tgagcctgcc atcattatcg gtaagcacca gaatgctatt gaagaaatca
     6121 acaaggaatt cacagatgaa aagggcatcc atgttgttcg ccgtctgtca ggtggtggcg
     6181 cagtttatca cgacctaaat aacctcaact atactattat ttcaaacaag gcagacgagg
     6241 gagcttttga cttcaaaact ttctccaagc ctgtcattga tacccttgcc acactgggtg
     6301 tagaggccaa tttcaccggc cgtaatgacc tggaaatcga cggaaagaaa atctgtggta
     6361 acgcccaagc ctatgccaaa ggtcgcatga tgcaccacgg ttgcctgctc tttgatgtgg
     6421 atatgtcagt cctcgcaaat gccctcaagg tcagcaagga caagattgaa tccaagggtg
     6481 tcaagtcagt ccgtgctcgc gtgaccaata tcaataacga attgccagaa aagatgaccg
     6541 ttctggagtt caaggatgcc attctcaacc agatgaagca agaataccca gacatggacg
     6601 agtatgtctt gtcagaagat gacttggctc gtatccaaga aatccgtgat acccagtttg
     6661 cgacttggga ttggacctac ggtcaaacac cagaatacac tgtggagcgc agcgtgcgtt
     6721 acccagctgg taaaatcaca acctacatca aggctgaaaa atcagtcatc gaatctatca
     6781 agatttacgg agacttcttc ggtatcggtg atgtatcgga tattgaagac ttgctggtcg
     6841 gcactcgcta cgagtacgca gatgtacttg cgaaactcca agaaatcgat acaacacact
     6901 acttctcacg catgacaaca gaagaagtag caaaagcgat tgtagcttaa tccatagggc
     6961 tgccctttgt ttgggcagtc tttatttttt gtgaaaatgt tttcggcaaa ctgttttcac
     7021 ttgcacattt tctatattat ggtataatta ttttctgtga gtatccctca cttactcgtg
     7081 gctagaccat gagtcattag accaaaagga ggaacatatc aatggctaaa tacgaaattc
     7141 tttatattat tcgtccaaac attgaagaag aagctaaaaa cgctttggta gcacgctttg
     7201 actctatctt gactgacaac ggtgcaacta tcgttgaatc aaaagcatgg gaaaaacgtc
     7261 gccttgcata cgaaatcaaa gatttccgcg aaggtttgta ccacattgtt aacgttgaag
     7321 ctaacaacga tgaagctctt aaagagtttg accgtttgtc aaaaatcaac ggcgacattc
     7381 ttcgtcacat gattgtcaaa cttgacgcgt aagaaggtgt tgtatgatta ataatgtagt
     7441 attggttggt cgtatgaccc gtgatgcaga acttcgttat actccgtcta atcaagctgt
     7501 tgcgactttt actttggcgg ttaaccgcaa ttttaaaaat caaaacggtg agcgtgaagc
     7561 ggactttatc aacgtagtca tttggcgtca acaagctgag aatttggcga attgggctaa
     7621 gaaaggtgct ctgattggtg ttacaggtcg tatccagaca cgtagctatg ataatcagca
     7681 agggcaacgt gtctacgtta ctgaggtagt tgcagaaagt ttccaactct tggaaagccg
     7741 tactgcccgt gaaggtcaag gtggaggcta ttcagctggc aactcgtttg ctggaggaaa
     7801 tgactataac tcgccttatc aagcgcctgc acaatctaca ccaaacttcg ctcgagaaga
     7861 gagtccattt ggagcaagta atccaatgga tatatcagac gatgacctac cattctaggt
     7921 caaaaattaa taatataaag gagaacacac atggctcaac aacgtcgtgg cggtttcaaa
     7981 cgccgtaaaa aagttgacta tatcgcagct aacaaaattg aatatgttga ttacaaagat
     8041 actgagcttc ttagccgttt catttctgaa cgtggaaaaa ttcttccacg ccgtgtaact
     8101 ggaacttcag ctaaaaacca acgtaaagta acaacagcta tcaaacgtgc tcgcgttatg
     8161 gctcttttac cattcgtaaa cgaagattaa aaaaatggtc cagtggacca ttttttcatg
     8221 agctcgaaat taagaaagcg aattaagtcc ttgaatggac tgttttaacc ctagccaaga
     8281 agttagaaag cgaggcacag tctggggata gactgtttca gcagattaca tagacaagtg
     8341 acagcggata aagttctcgg gcgatttgat agctgaactg tatagataaa caaaagcgac
     8401 tggaattcca atcgctttgt tttattattg aactggggac atggcattgc gaatgttata
     8461 tttctttttc aggaggtagc gtgcaccgaa agcagcagct ccgataagaa tagtaacaag
     8521 cggagggaga acagggttaa atgcggccgg aatcagtgct gccagaatga aaacgactga
     8581 ccaagccagc gtagcaagtc cgagaaaagc gatagctttc agcaatttag gacgttgccc
     8641 agttttaatt tgttctctgt aaacgaaatg gtacatcaag tacatccctg caccaacacc
     8701 gaaaccgatg acaaataagg ttaatagccc atactgtgca ccttgaccaa aaagattcat
     8761 caaaccattg ataccagcaa taattgcaag catgaaaaga ctagaatcta gccacatcaa
     8821 ccatggattt tcattgtatt ccacttggtc tttcttttcc tgttcagaaa ttgtcttact
     8881 agcagcccac tcacttggtg ctccatagag attgcgggca gtcacaccag ttttttgctt
     8941 ttcaatgata gttggtaaaa tttcttccaa gagttctttg atttcgctat cagactttcc
     9001 atctttaatc agttggttgg tcgcaatatg gataaattct tggttctttt ttgttaatcc
     9061 gttgatttct gtaaatgaca tgttaatctc cttagtttaa aaccatctct tacggatgaa
     9121 gtagaaggtg agtgataggc tgattgcaaa tgcgaagagg ataatccacc aaaaagcata
     9181 gggaatatcg ttaaaaggaa tgatgttgtc cttaaagttc ataccgtatg cagagaagac
     9241 catggttggg atagagagaa cgattgtcac taatgccaag gttttcatga tggtattctg
     9301 gttgttagaa atgatagaag caaaggcatg ggtcatagag ttcaggatgg aaccatagat
     9361 gtctgccatc tcaatggcct gttgggtttc gaccaaggta tcttcaagca aatcctcatc
     9421 ctcttcatac ttacggagta gacgtgagga actagcaagt tttttgacca aacgctcatt
     9481 ggttttgagg gaagccttga agtagacgat ggttttttct aattccatga gtacaattaa
     9541 ttcttcattt cgagtggctt catggagttg cttctcaatc tcttcgctct ttctgtcaat
     9601 ggtccgtagg gctgacaagt agagttgagc atttcggtag agaatttgga aaacgaaacg
     9661 agacttcatg aaagtgaaga aattccgtag acgacgatgg ataaactgct caaacagtgg
     9721 caatggttcc aaacaagtcg tgataatcgc atcatctgtt agaataattc ccaaaggaat
     9781 agtaatataa tatgtcttgt tgtttcgttc ttcaagaatt gggacgtcga ccaggatgag
     9841 cgtatagtca tcttcgacag tgatacgaga ggattcttcc gcatcgagcg gtgctcgcag
     9901 gtcagcgatg tcaattttat agtgctcagc cacttccata gactcgctct gggaggggtt
     9961 gaccaaatta atccaagccc ctggttcaaa ggtttggatt tcttctaaat cagtcatggt
    10021 tgatagaaaa atttgtttca tatctttgcc ctccttttat ctttgttgcg ttaacgcaac
    10081 ctctattata ccaaaaaatg tgcagtttcg gaaaggtttt atatagaaat gtgatataat
    10141 atgtagacat ttaagcgaat aagttgtacg gacttttcct tgttccgtat accatagctt
    10201 atagcctctt aagaaaggaa atgaatgcgt gctaaaaaaa ctagcaaaaa agatacgcag
    10261 ccgtttcagc ttcagctgat tacggatgtg gatgctgtaa agtgcaaatc ttctcgtgtg
    10321 tttggcacac ttcgcagatt tcctattttt gtacggtttt cttaacgtga gattttcaaa
    10381 acgatatttt ttgaaaatcg agctaataca agatatagaa attgcccata ggcagtttcg
    10441 tctggtgacg cggagttaat cgaccgtcac cagttatctt gtgaacgcac atatatctag
    10501 aaaggaattg aacacgccct aaacgctgtg tgaaaaattg ctggtttctt catgtttaag
    10561 cgtgtggaac tggcttctgc gtcgtagaca tctgtgcttt cttcggtttt cgacctgtga
    10621 aagcactagt tgtcttgacg ggggtgcgtc ttcgaaatca cagatttcgg acttaccgcc
    10681 tattttcacc gtgcgtttta cgggctctgt atcttagaaa ggattcgaat gcgtgctaaa
    10741 aacctagcaa aaaagataaa tcttctcgtg tgtttggcac actttgcaga tttcctattt
    10801 ttgtacggtt ttcttaacgc acttatatca tgttatgcaa gaaaatattg tgattcatgg
    10861 ggcgcgtgcc cataatttga aaaatattga tgtgaccatt ccgcgtgaga agttggtggt
    10921 ggtgactggt ttgtcaggct ctggtaagtc gagtttggct tttgatacct tgtatgccga
    10981 aggccaacgc cgctacgtag agtccttgtc tgcctatgct cgtcagttct tgggcaacat
    11041 ggacaagcca gatgtggatt ccatagaggg tctcagccct gctatttcca ttgaccaaaa
    11101 aacaacctcg cgtaatccgc gttcgacagt cggtacagcg acggaaatca atgactatct
    11161 ccgcctgctc tatgctcgag ttggggtgcc ttactgtatc aacgggcacg gggcgattgc
    11221 ggcttcttcg gtggagcaga tcgtcgatga ggtcttggaa ttgccagaac gccagcgttt
    11281 gcagattcta gctccgattg tccgcaagaa aaagggtcag cataagacta tttttgagaa
    11341 aatccagaag gatggctatg ttcgggttcg tgtcaatggt gatgtctatg atgtgtcgga
    11401 agtgcccgag ttgtccaaga gcaaggctca taatattgaa gtcgttgtcg atcgaattgt
    11461 gataaaagaa ggtattcgct ctcggctttt cgattctatc gaagcggccc tgcggattgc
    11521 ggacggctat gtcatcatcg acaccatgga tgagaaggaa ctgctcttct ctgagtacta
    11581 tgcctgccca gtttgtggct ttacggtacc agagttggag cctcgtcttt tctctttcaa
    11641 tgctcctttt gggtcttgta gcgattgtga cggtttgggc atgaagctgg aagtggatac
    11701 ggatttgatt gtcccagatg ccagcaagac cttgcgtgag ggtgctttgg ctccgtggaa
    11761 tccaatctca tccaactact atcctcagat gttggaacag gctatgaacc attttggtgt
    11821 ggatatggac aagccttttg aggaattgac ggatgaggag aagaacctga ttttcaacgg
    11881 ctcggacggc aaagaattcc atttccatta tgaaaatgag ttcggtgggg tgcgtgatat
    11941 tgatattcca tttgaaggat tgattaccaa cattaaccgt cgctaccgtg aaaccaacag
    12001 tgactatacg cggacggtta tgaagactta catgaatgag ctgacctgtg gaacttgcca
    12061 cggctatcgc ctcaatgacc aagccctgtc tgtcaaagtt ggtggcgagc agggacttca
    12121 tatcgggcag ttgtctgatt tgtccgtagc ggatcatctg gaagtcattg aaaatctgac
    12181 cttgtctgaa aatgaagcca ccattgcaac accgattgtc aaggaaatca aggatcgcct
    12241 gaccttcctc aacaacgttg gtcttaacta cctgacgctg tcccgagcag ctggaaccct
    12301 atcaggtggt gagagtcagc ggattcgttt ggcgactcag attggctcaa acctgtctgg
    12361 tgtcctttac atcttggatg agccgtcaat tggtctgcac cagcgggaca atgaccgcct
    12421 cattgccagc ctgaaaaaga tgcgtgattt gggcaatacc ttgattgtgg tggagcatga
    12481 tgaggacacc atgcgggagg cggactggtt gattgacatc ggtccaggtg cgggtgtctt
    12541 tggcggagaa atcgtggctt ctggaacgcc tgcccaagta gctaaaaata aaaaatccat
    12601 tacaggccag tacctgtctg gtaaacgtga aattccagtt cctctagaac gtcgtgttgg
    12661 caatggtcgt ttcctggagg taacaggtgc caaggaaaat aacctgcaag atgtgactgt
    12721 tcgtttcccg ctcggaaaat ttgtagcggt gacaggggtg tctggctcag gtaagtcaac
    12781 tctggtcaat tccattctga aaaaagctat tgctcagaaa ctcaatcgca attcggacaa
    12841 gccaggtaag ttcaagtcta tttcaggaat tgaacacttg gaccgcctga ttgatattga
    12901 ccaaagcccg attggacgaa caccgcgttc caatccagct acctacacag gtgtctttga
    12961 cgatattcgg gatttgtttg cccagaccaa tgaagccaaa atccgtggct acaagaaagg
    13021 acgtttctcc tttaacgtca aaggtggtcg ttgtgaggct tgttctggtg atggtatcat
    13081 caagattgaa atgcacttcc tgccagatgt ctttgtgcca tgtgaggtct gtcatggaca
    13141 ccgttacaat tctgaaacct tggaagtaca ttacaaggag aaaaatatcg cccaagtcct
    13201 tgatatgacg gtcaatgatg cggtcgagtt cttcaagcat attccaaaaa ttgagcggaa
    13261 acttcgtact attcaagatg taggtttggg ctacgttact ctaggtcagc cagcaacgac
    13321 cctatcaggt ggggaagccc agcgtatgaa gttggcttct gaactccaca agcggtcaac
    13381 tggtaaatcc ttgtatatct tggatgagcc gacgacaggt ctgcatacgg aggacattgc
    13441 ccagttgctc aaggtcttgg cccgctttgt tgatgatggc aataccgtgc tggtcatcga
    13501 gcacaatctg gatgtcatca agacagccga ccacattatc gacatggggc cagaaggtgg
    13561 tgttggtggt ggtaccgttg ttgcgacagg aacaccagaa gaagtagcag agaacccagc
    13621 cagctttaca ggtcaatatt tgaaaatgaa gttgaaataa aaagtcgcct ctgcggcttt
    13681 ttttctctat ctgctaggaa gaattggtat ttgtctgtat ttctgctata atagttaaaa
    13741 aatcattgga ggaataggat gcaaaaaaga cttgaaaaat ttgaagcaaa attagctcaa
    13801 tcaactgttg atggaatctt ggtgactggg cagaataata tttattatct aacaggtttc
    13861 tgggggacag aggcgactgt cttcatcagt ggcaagcgtc gtttgtttgt gactgattcg
    13921 cgttatactt tgatagccaa ggcatcagta aaaggttttg atattatcga gagccgtttt
    13981 gcccttgaag agattgcaaa ggtgattaag gaagatgggc ttgaaaaaat tggttttgat
    14041 agcgaggtga cctatggttt ctatcaaagt ctgaccagta tttttgaggg ctatcaactg
    14101 gttgctatgt caaactttat cgaagacttg cgcatgatta aggatgagaa agaaattgcg
    14161 accattcgcc gtgcttgtca gatttcagac caggctttta ttgatgttct tgactttatc
    14221 aaaccaggtc agacgactga gatggacatc aatcatttcc ttgaccaccg catgcgtcaa
    14281 ctcggtgcag aaggggcatc atttgagttc atcgtggcat ctggataccg ctctgctatg
    14341 ccacatggaa gagcgtctga aaaggttatc caagctggag agaccttgac gctggatttt
    14401 ggttgctatt accaacatta tgtcagcgat atgacgcgta ccatccatat cggtcatgtg
    14461 acagaccaag agcgtgagat ttacgatgtg gttttgcgtg ccaacaaggc tttgattgag
    14521 caggcaaagg aaggcgtcac ctaccgcgag tttgacgcta ttcctcgtga aatcatcaat
    14581 gaagcaggtt atggtgccaa tttcactcat ggaattgggc acgggattgg tttggacatt
    14641 cacgaatatc cgtactttgg aaaatctgac gagccaatca aggctggtat ggtcttgacg
    14701 gatgagcctg gtatttattt ggatgataag tatggtgtcc gtatcgaaga tgacctcttg
    14761 attacggaaa caggctgtga agtcttgaca ttggctccaa aagaattgat tgtcatttga
    14821 gaaatttgac agtttatggt aaaataaaac gaataaataa aattttgaag aggtattcaa
    14881 tacaatgatt gaagcaagta aacttagagc aggcatgacc ttcgaaacgg aaggtaaatt
    14941 gattaaggtc ttggaagcga gccaccacaa gccaggtaag ggcaacacca tcatgcgtat
    15001 gaaattgcgt gatgtgcgta caggttcaac cttcgataca acttaccgtc cagatgaaaa
    15061 atttgaacaa gctattatcg aaacagttcc agcacaatac ctatatcaaa tggacgacac
    15121 agctttcttc atgaacactg aaacctatga ccagtatgaa attccagtag caactatcaa
    15181 ggaagaattg ctttacatct tggaaaactc agatgtgaaa atccagttct acggaacaga
    15241 agtaatcggt gtgactgtac caacaactgt tgaattggtc gtagcagaaa cacagccatc
    15301 tatcaaaggt gcgactgtta caggttcagg taagcctgca actatggaaa ctggtttggt
    15361 ggttaacgta ccagacttta tcgaagcagg tcaaaaactg gttatcaaca cagcagaggg
    15421 aacttacgta tcacgtgctt aagggtttcc tcctagaaag gagagcttat gacaacagaa
    15481 taccaaggtg aaatcgtcat tgcaccacgc gttcttgaag tgattacagg tattgcagca
    15541 gccaaagtgg aaggggtaca ttctcttcac aacaagcgtg tggcagatac ttggtcaaaa
    15601 tcttccttaa ataaaggtgt ataccttcaa actgacgacg aaggaaaagt aacagcagac
    15661 atttatgttt acctagagta cggtgtcaat gttccagctg tatctatgga tattcaacgt
    15721 gcagttaaaa cagctattta taactacgca gaagttgaag tgactgctgt caatattcat
    15781 gtcaatggca ttgttccaga taaaacacca aaaccagcct tgaaagattt attcggagag
    15841 gatttccttg atgaagaata atagacacgc cctgcgtaag tgtgctttgc aggcaatcgt
    15901 atcacttgaa tttggacaag aacctgttca ggcagctcag ttttcttatc tgtatgacag
    15961 agaggatgaa caagaaggag ttgaaattcc gcttttcctc ctcaatcttg ttaatggtgt
    16021 ggcagattat cgtgaggact tggataagga gttatctagc cgattaaaag caggatggac
    16081 cttagaccgt ttaaccttga ttgacaagaa tatcatgcga ctaggactat ttgaaatctt
    16141 acatttcgaa gaaacgccag accgtgttgc tgttaacgag gctattgaat tggctaaaga
    16201 attttctgat gaatcttcag ctaagtttat caatggagtt ttgagccagt ttattaaaga
    16261 agaagcctga tgagcttctt ttttacttga gaaacaagag aatgtatcac aaaaaaagct
    16321 gtacctaatt tttattaggt gcagcttttt tatatactag ctcctgctag taggctaatc
    16381 ggtaggatat agtctgtttt tgtcagtttt tttccttcga ttttatcaac taatagttca
    16441 accagcaggc gagctatttc ggttaatggt tgcttgatgg ttgtcagttg agggtagtag
    16501 ttttcgatga aactggttcc atcataacca atcaatttaa tatcttctgg aatagacagt
    16561 ttcattgaac gaatgacgtt ccataccagc atagccgttg catcgccaga tacaaagata
    16621 ccatctggtt tttgcttttc aagaatggct cggatttcca tctccttgcg cacaggtgag
    16681 aaatcactgg agatatgaaa aacttcggct ttgttcaaaa tagatgtgaa acctacttgg
    16741 cgaaggccgg taggtgaatt ggaatcatcg ttccccgtaa tcattaatgg attgtgacat
    16801 cccgcttttt gtagggtttg ggcagctaat accccgccag caaaattatc ggaagagaca
    16861 atggggatgg aaggagagag gttgcggtca aaagcgataa ttggagctac gacacggtcg
    16921 tagtcttgga taccgagatt gtgactgccc gagataatcc catctacttg gttagctgct
    16981 aacatttcta gatactcacg ttccttatcg gactcgtgct ggctattgca aataatggtt
    17041 ttatagcctc gatcaaaaag ctctttttct aaatggctaa tcaattcaga ataaaaaata
    17101 ttgtttattg ttgggaagat gagaccaact aattttgcag atttaccttg caaactacga
    17161 gctaaattat taggtttgta gcccagttca cgcatagcct cttcgacatt gcgaatggtt
    17221 ttttcagata ggtatccttt tttattgata acgcgcgaga cagttgttgg gctgacccca
    17281 gctaactgtg cgacatcagt tagttttgcg accataatct aaatggtagt aggttccggt
    17341 cggattacca gtcgtaatga ctataccaga ctgatccgca tcagggaaga cacgaccaga
    17401 aaatactttc tctcctttat tgataaagat ttcaaagaca gatttgtcga tgaagatatt
    17461 ggctgtaaga gctcctggag aaatctcgca agagcgactt gtgccgaaat cgagtgcgaa
    17521 tggctgacca cagttgccgc ggtccaatgt aatctggcct tgttcagtgt ctacagacaa
    17581 gaccaagcct ttttctgctt catttgcgaa caatacgatt tcgtgcttcg tgcccgctga
    17641 aaaatcaagt tccaattcgt aaacattatt ggtttctttt tgggctgaaa atggctgagc
    17701 ttctttacga agactggtaa tcgcatcgac tggatattgg tagagcttgc cgtccttgat
    17761 ggttaattct ttaaccaatg acagacagcc ttggtagtca taagcatcgg ttgggtattc
    17821 cacatctgga agtgccaacc agctaacaga tagagttcga ccgtctggtg cattaaaggc
    17881 ctgggttgca tagcactcaa aaccatagtc cagattgatc aattcgatcg gttcgacaat
    17941 gcttgctgtt tcaggatcga aactctgacc aatcttgtac atatttggat agatattgcc
    18001 atagtccaat acctctttgt ccaagccttg tggacagtag agaaggatgg gttgctcacc
    18061 gacgaacgca atatttgggc attccatcat ataagcggtc atatcattgg caaaatctag
    18121 gtcaccaaca taggaccagt tgaggtagtc gttattttca gctttataaa gtttgacaat
    18181 ccccttttta tccaaatttt gtccaccgac gatagcgtaa tattgccctt tatagttgaa
    18241 aatttgtgga tcacggaaat ggtcggtggt atcttctggt tgctcaatca agactttatc
    18301 aatcttttca atcttaccat ctttatccat taaggcaccg atttggtatg gatggcgaac
    18361 ccaattttca tcgcggacat ttccagtgta gaagaggaag agcttgtcgc caaattccat
    18421 ggcagatcca gagtaggcac cgtggctatc aagtggtgta tctgggtaca taaccgtacc
    18481 agtttcttca aaatggacca aatccgttga ttctgtatgg acccaagatt tcaatccgtg
    18541 cgcagcaccg aatgggaagt attggtaaaa aagagtccat tttccattaa aataagaaaa
    18601 tccatttgga tcatttaaca gtccgtgtgg tgtttcaata tggaaatttg tcctccaagg
    18661 agaactctct gtattcttct ttattttttc aatatattcg ggtgtccagt cagcataagc
    18721 cctgtaacgc tcctctgttg taaatgccat aattttctcc aatttttcta gtttttcatt
    18781 aatatagtaa acgttttctt gcaaaaaatc aagttttaac aatgtttttg gataaaattg
    18841 aaacaaaatg tgataaacgt ttgacatatt ttataaaagt gatataataa aaccatcgaa
    18901 agtttgaaaa cactttcaaa aaataaaaaa tatacaaaaa ggagattttt gtaaatggat
    18961 tataaaaaag tttctgccga agtgatcgaa gcggttggga aagataatct agttgcggca
    19021 gcacactgtg ctactcgtct tcgtttggtt ctgaaggatg aatccaaagt gaaccaaaaa
    19081 gccctcgatg ataatgcaga tgtcaaaggg acattcagta cgaatggtca gtatcaagtt
    19141 atcatcggac ctggtgatgt aaactttgta tatgcagagc tcatcaaggc tacaggctta
    19201 aaagaagttt caacagatga tttgaaacag attgcagcgc aagataagaa gttcaatcca
    19261 ttgatggact tgatcaagct cttgtcagat atctttgtgc caatcattcc ggctctcgtt
    19321 gctggtggtc tattgatggc gcttcgtaac ttcttgactt ccccagattt atttggtcca
    19381 aaatcaattg aggaaatgta tcctgctatc caaggcattt ctgcgatgat tcaattgatg
    19441 tcagcagctc cattcatgtt cttgccagtc cttgtaggta tctccgctgc gaaacgcttt
    19501 ggtgcaaacc aattcctcgg tgcggctatt ggtatgatca tgaccactcc agatttgggt
    19561 ggtaaagaag ctttttggga tatttttggt ttccaagtag ctcaaacaaa ctatgcatat
    19621 caggttattc cggttcttgc agcagtatgg cttcttgcga cgcttgaaaa attcttccac
    19681 aagaagttgc catcagcagt tgactttaca ttcacaccat tattgtcagt aatgattaca
    19741 ggtttcttga catttacagt catcggtcct gtgatgttga ccgtatctga tgcgattact
    19801 aacgcaattg tttggttgta cgatacaact ggtgcgttgg gtatgagtat ctttggtggt
    19861 acttactcat tgatcgtaat gactggtctt caccaatcat tcccagccat cgagacacaa
    19921 cttttgtctg cttacaacaa taatggtaca ggatacggag actacatctt tgtagttgct
    19981 tcaatggcta acgttgcaca aggtgctgca actcttgcta tctatttctt gacaaaaaat
    20041 gcaaaaacaa aaggtttgtc cggttcagca gcagtttctg ccttccttgg aattacagaa
    20101 ccggccctct tcggggttaa cttgaagtac agattcccat tcttctgtgc tcttgcaggt
    20161 tcggctatcg gtgccctctt tgcaggtttg actcatgtta tcgctgtatc tcttggggca
    20221 gcaggtttca ttggattcct ctcaatcaaa gcatcttcta tcccaatgta tgtagttgct
    20281 gaggtgattg cttttgctgc tgcctttgcc tttacttacg tttatggcaa gacaaaagca
    20341 tcagcagttt tcgctgatga agcagcaaca gcgtctgtag ttgaaacttc agaagaagtt
    20401 gaagaaactg cagaaatctt tactgcacaa gaaactcttg tatctccact ttcaggtgac
    20461 gttgttgccc ttgaaaatgt taatgaccca gtcttctcat caggagctat gggtaaaggt
    20521 ttggctgtta aaccgtctga gggtgttgtt tacgctccag cagatgcaga agtaacaatt
    20581 gcttttgaaa caggccatgc ttacggattg aaaacagcgt ctggtgctga acttttaatt
    20641 cacatcggta ttgatactgt atcaatgaac ggtaatggat ttgaaaaatt ggtggcagca
    20701 ggtgataaag taaaagctgg tactccgatt gctaaatttg atgcaactaa gattgcagaa
    20761 gcaggtcttg atgatacaac catgatcatc gtgaccaaca cagctgactt tgcagaagta
    20821 tctccacttg cagagggaac aatcgctcac ggtgtagaat tcttgaaagt agctaagtaa
    20881 tcttatataa aatcgatttg tagagtctgc ctctactaca taattaacag gaaaaaggct
    20941 ttcagccttt ttcttctgtt tgcttatatg ttataataaa agtgataaaa attttggaga
    21001 aaatcaaatg acaaaattat atggtagttt agaagctggt ggtacaaagt ttgtttgtgc
    21061 agtaggcgat gagaactttc aagttgttga aaaaactcaa tttccaacga caactcctta
    21121 tgaaacgatt gagagaacag ttgaattctt caagcgctat gaagatcgtt tggcaggtat
    21181 tgcgataggt tctttcggtc caattgatat tgatcaaaac tcacagactt atggttacat
    21241 cacttcgaca ccaaaaccac actggtcaaa tattgattta cttggtctga ttgctaagga
    21301 atttaacatt ccattttatt tcacgacaga tgtgaattca tcagcatttg gtgaaaccct
    21361 ggttcgtaaa ggggtaaaga gcttggttta ctatacaatc ggtacaggta ttggtgcagg
    21421 tgctattcag aatggtgagt ttatcggtgg cttgggtcat accgaagcgg gtcatactta
    21481 cgttgcccta cacccttacg atgtaaaaca tgaatttaaa ggaatgtgtc cattccacaa
    21541 tgggtgtttg gaaggcttag ctgcaggtcc ttctcttgaa ggtcgtacag gtattcgtgg
    21601 tgaattgatc gagctcaatt cagacgtttg ggatgtgcag gcttactaca ttgctcaagc
    21661 agcagtacag gcaaccttgc tttatcgtcc gcaagtaatt gtatttggtg gaggagttat
    21721 ggctcaagag cacatgctta atcgtgtacg tgagaagttt gtcggtttga tgaacgatta
    21781 tctcccaaca ccagatgtca aagaatatat cgtaacgcca gctgttgctg aaaatggttc
    21841 tgcaactctt gggaactttg ctttggcaaa acaggtgtca agaaattcat aattgtttat
    21901 gtgaacagat tcatttgtac tttggcgata gatatattga agaagaatat tgggtgaagt
    21961 tgttttatta tcacaataac ttgacagtga ggtgagagtt tttatgtaac tctcacctct
    22021 ttttacctaa aaaactgtat tcataagaga tagccattcg ttaatcaagg cagttttggg
    22081 gagtaggaaa ggacccgacc agc
//
LOCUS       DASFRC010000016        21605 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.016, whole genome shotgun sequence.
ACCESSION   DASFRC010000016 DASFRC010000000
VERSION     DASFRC010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 21605)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21605)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21605
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.016"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(161..400)
                     /gene="yidD"
                     /locus_tag="U1087_000441"
     CDS             complement(161..400)
                     /gene="yidD"
                     /locus_tag="U1087_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002272085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEM4754955.1"
                     /translation="MTRLLIGLVRFYQKFISPLFPPSCRYRPTCSAYMIEALQKHGLK
                     GFLMGLARIGRCHPFVEGGEDPVPDRFSLKRNKQK"
     gene            complement(400..1131)
                     /locus_tag="U1087_000442"
     CDS             complement(400..1131)
                     /locus_tag="U1087_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEM4754956.1"
                     /translation="MRINKYIAHAGVASRRKAEELIKQGLVTVNGQVVRELGTVIKSG
                     DKVEVEGQPIYNEEKVYYLLNKPRGVISSVSDDKGRKTVVDLLPTVKERIYPVGRLDW
                     DTSGVLILTNDGDFTDEMIHPRNEIDKVYLARVKGVANKEVLRPLTRGVVIDGKKTKP
                     AVYEIIKVDPVKNRSVVELTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGNLDLTGLRP
                     GEYRKLNKKDISKLHTLAVTKPVKK"
     gene            complement(1121..1690)
                     /locus_tag="U1087_000443"
     CDS             complement(1121..1690)
                     /locus_tag="U1087_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="segregation/condensation protein B"
                     /protein_id="HEM4754957.1"
                     /translation="MNRLAEIEVLLFVAGEDGLTLRNLAEMLEMQPTAVSQQLEKLSE
                     KYMADKASGLAILESSNRYKLVTKKEYANLLRIYAKTPINQTMSRALLETLSIVAYKQ
                     PITRIEVDDIRGVNSSGAISKLQAFDLIRENGKKEVLGRPNLYVTTDYFLDYMGINSL
                     EELPDVSEIDLIQEETELFVERNELENEN"
     gene            complement(1674..2393)
                     /locus_tag="U1087_000444"
     CDS             complement(1674..2393)
                     /locus_tag="U1087_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="segregation/condensation protein A"
                     /protein_id="HEM4754958.1"
                     /translation="MDIKLKDFEGPLDLLLHLVSKYQVDIYEVPITEVIEQYLAYIAT
                     LQAMRLEVAGEYMLMASQLMVIKSRRLLPKVVKQIAPEDDPEMDLLDQLEEYRKFKLL
                     SEKLGEQHDERANYFSKPKLDLIYDDVQLAKDKTVIDIFLAFSKVMAEKQASLRQSHA
                     TIARDEYKIEDMMDFVRSRFETGPRLELRQLFQESQDVNEMITIFLATLELVKVHEIV
                     LEQTETFGDIYLVRSEDESLS"
     gene            complement(2393..3124)
                     /gene="xerD"
                     /locus_tag="U1087_000445"
     CDS             complement(2393..3124)
                     /gene="xerD"
                     /locus_tag="U1087_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HEM4754959.1"
                     /translation="MKQAIESFIQSKKVSVNSQKSYTYDLQQFVTVTRGEICQQSLLV
                     YQQSLLDLKPAAQKRKMSAVNQFLYFLYENNLLDRFYKLQTMSGPASVKKKLEREDLT
                     LLFQESPWLEGQLIALLIAYLGLTPSEIAELTSQQVNLDFQVLTVEKGGAKRVLTLPK
                     ELIPYMESHLSGRYVFDKKGQTYSRQWFFNRLTEFVQSIGKPDWTAQKLREQYILKQI
                     DEGKSLDQIAKQLGLKTSMSLEKFR"
     gene            complement(3121..3579)
                     /locus_tag="U1087_000446"
     CDS             complement(3121..3579)
                     /locus_tag="U1087_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEM4754960.1"
                     /translation="MIAREFEAFLLDQEETFLTPADKLAVIIDTHNIDHAKLLLSHMT
                     YSRVPVVTEDGRFFGTIGLTEIIKYQAENELSDDELNRDISVIVKTDEETVGLDYDLT
                     EVMRKLVDQSFLPVLGENREFMGIITRKSILKAINALLHNFPLASKEGKK"
     gene            complement(3576..4103)
                     /locus_tag="U1087_000447"
     CDS             complement(3576..4103)
                     /locus_tag="U1087_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEM4754961.1"
                     /translation="MAGASKTILVMSDSHGDRQIVEDIKHHYLGKVDAIFHNGDSELD
                     SQDSLWDGIQVVNGNCDYFGGYPDQLITQLDGVTIAQTHGHLYGINYGWQRLDYWAQE
                     VDADICLYGHLHVPDAEVRGKTLFLNPGSVSQPRGLVRECLYALVTIYDDHFHVDYYN
                     RQHQLYPALTKDISR"
     gene            complement(4076..5086)
                     /locus_tag="U1087_000448"
     CDS             complement(4076..5086)
                     /locus_tag="U1087_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-triphosphate diphosphatase"
                     /protein_id="HEM4754962.1"
                     /translation="MTDKIYEYRDEHNWFIGKASFANLFGSFGENGREQEIYQIGQLF
                     DKLIAGNYEDENFNQCVNIEVIKLQSEFALFQFACDTLNELNNRQFKALQHQGAILVT
                     ENDKLLLVHLPHAGVSTADFFGQDKGLASVGDIILIATKNEGKTKEFRKFFERFGYQV
                     ENLNNYPDLPDVAETGMTFEENARLKAETIAELTGKMVLADDSGLKVDALGGLPGVWS
                     ARFSGPDATDELNNAKLLHELAMVFELKDRSAQFHCTLVMAAPNRDSLVVEADWEGFI
                     GMDLRGENGFGYDPLFLVGETGKTSAELTLEEKNKISHRAQALEKLVEAFPVWQEQAK
                     QS"
     gene            complement(5083..5877)
                     /gene="racE"
                     /locus_tag="U1087_000449"
     CDS             complement(5083..5877)
                     /gene="racE"
                     /locus_tag="U1087_000449"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002931399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HEM4754963.1"
                     /translation="MDNRPIGFLDSGVGGLTVARELMRQLPHEEIAYIGDSARAPYGP
                     RPAEQIREYTWQLVNFLLTKNVKMIVFACNTATAVAWEEVKEKLDIPVLGVILPGASA
                     AIKATQTGKVGVLGTAMTIQSDIYRQKIQALSPETQVDSLACPKFAPLVESNSHQSSL
                     AKKVVYETLRPLVGKVDTLVLGCTHYPLLRPIIQNAMGKDVKLIDSGAECARDISVLL
                     NYFQINRSRTEKAIQHQFYTTASPAAFKEIAESWMGIDIHVEHVEL"
     gene            complement(5967..6203)
                     /locus_tag="U1087_000450"
     CDS             complement(5967..6203)
                     /locus_tag="U1087_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YneF family protein"
                     /protein_id="HEM4754964.1"
                     /translation="MNLGLAILLIVLAFAGGVALGIYLSRKQVENYIADKPVLDENAL
                     RLMMSQMGQKPSEAKVQQVLRQIKSQQKVASKKK"
     gene            complement(6306..7553)
                     /locus_tag="U1087_000451"
     CDS             complement(6306..7553)
                     /locus_tag="U1087_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HEM4754965.1"
                     /translation="MTKTPFVSKEVLETITEQFPTPFHLYDEKGIREKARALNAAFAW
                     NKGFKEYFAVKATPTPAILKILQEEGCGVDCATDVEVLMSEKLGFKDIMFTSNDTQAQ
                     EFVYARKVGATINLDAYEHIEFLKNLAGIPETVCLRYNPGGVFSLGTDIMDHPEESKF
                     GMTKEQLMKGYKELKELGVKEFGIHAFLASNTVTNDYYPVLAHQLFELALEIREETDV
                     TLDFIDLSGGIGVNYRPEQEPNDIAVIGEGVRKVYEEILTPAGMGHIKIFTELGRFML
                     APHGHLITKVLHRKETYRTYIGVDASAANLMRPAFYGAYHHITNITRPDAPIEVVDVA
                     GSLCENNDKFAVNRELPRAEVGDTLVIHDSGAHGFSMGYNYNGRLRSSEILLQEDGTA
                     RMIRRAETPEDYFATIYGFDFDR"
     gene            7687..9018
                     /gene="pepC"
                     /locus_tag="U1087_000452"
     CDS             7687..9018
                     /gene="pepC"
                     /locus_tag="U1087_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014607929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase C"
                     /protein_id="HEM4754966.1"
                     /translation="MSTLDFDFTERLYANYLANPSLQATENAVSHNGLLKSLETRQSA
                     IDNDYVFSIDLTKDAVSNQKASGRCWMFAALNTFRHKLISNFKLENFELSQAHTFFWD
                     KYEKSNWFLEQIIATTDQEIGSRKVKFLLDTPQQDGGQWDMVVALFEKYGVVPKSVYP
                     ESISSSASRELNQYLNKLLRQDAQILRDLLAKGASPEEVQTQKENLLQEIFNFLAVNL
                     GLPPRSFDFAYRDKDNVYHRDTNVTPQAFYEKYVGLKLSDYVSIINAPTTDKPYNKSY
                     TVELLGNVVGAPAVRYLNVEMNRFKELAIAQLKAGESVWFGSDVGQSSNRQTGIMATN
                     TYDFSSGLGIHFHQDKAGRLDYSESLMTHAMVLTGVDLDDNEQPLKWKVENSWGDKVG
                     DKGYFVASDSWMDEYTYQIVVRKEFLTQEELAAYQAQPQVLAPWDPMGALA"
     gene            complement(9067..9768)
                     /locus_tag="U1087_000453"
     CDS             complement(9067..9768)
                     /locus_tag="U1087_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HEM4754967.1"
                     /translation="MNNDSFIINQVDNTALNRFFGKIYGVVAMGIGLSALVSFLAVTV
                     FQSLLLSLLSAGSIIMMLIMIGQIALVVSASAMAAKNSPMALPMFLAYSVTNGITISM
                     ILMFYTSETVVLAFVSAALMFAIMAVIGMTTKKDLSGMAQALRAALWGIIIASVINIF
                     LRSSGLSFMMSIISVLVFSGLIAYDNQRIRNVFEQTGGNVGQGWVVSMALQLYLDFIN
                     LFLNLLRIFGGLSRD"
     gene            complement(9790..10272)
                     /locus_tag="U1087_000454"
                     /pseudo
     CDS             complement(9790..10272)
                     /locus_tag="U1087_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027625.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
     gene            complement(10319..11059)
                     /locus_tag="U1087_000455"
     CDS             complement(10319..11059)
                     /locus_tag="U1087_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HEM4754968.1"
                     /translation="MEIIRSKANHLVKQVKKLQQKKYRTSSYLIEGWHLLEEALAAKV
                     PIEHILVSEEHVHRVAGLSNVTVVSSDIMQDLADSRTPQGVVAQLALPSQLLPETLDG
                     KFLVLEDVQDPGNVGTMIRTADAAGFDGVFLSDKSADIYNMKVLRSMQGSHFHLPVYR
                     MPMTAIFSALKSNQLQILATTLSSQSVDYKEVTPNPSFALVMGNEGQGISTFVADEAD
                     QLVHITMPGQAESLNVAIAAGILLFSFI"
     gene            11190..11471
                     /locus_tag="U1087_000456"
     CDS             11190..11471
                     /locus_tag="U1087_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HEM4754969.1"
                     /translation="MRKVKMIASGRVQGVGFRWSVQFLAVEIGDIYGRVWNNDDGTVT
                     ILAQSDNAEKLSHFIHEIRKGPSRMAKVTYLDITLANFEDYKDFQVAYR"
     gene            11535..12455
                     /gene="yidC"
                     /locus_tag="U1087_000457"
     CDS             11535..12455
                     /gene="yidC"
                     /locus_tag="U1087_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018030373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEM4754970.1"
                     /translation="MLKKNKRILLTGLALSTLVFLSGCVQTKNGVPTGEGWVYNFLVA
                     PMGNLIKFFAENQGLGFGVAIIIVTLIVRLFIMPLGIYQSWKSTYQSEKMNYLKPILG
                     PIQERMKNASSQEEQLAAQQEYFAAQKQYGVSVFGGMGCLPILIQMPFFTALFYAARY
                     TEGISEATFLGIDLGSASLILTAIAGILYYAQSLLMQVGMDEEQKKQMKAVAIMNPIM
                     IMMFSFGSPAGVTLYWVVGGLFGILQQAITNFILKPRIRKQVEEEFKNITVSATPRKT
                     KDVTPTASAVIEEKTSNKKRNRNAGKQRSR"
     gene            complement(12539..13021)
                     /gene="greA"
                     /locus_tag="U1087_000458"
     CDS             complement(12539..13021)
                     /gene="greA"
                     /locus_tag="U1087_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018377052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HEM4754971.1"
                     /translation="MAEKTYPMTLEEKEKLEKELEELKLVRRPEIVERIKIARSYGDL
                     SENSEYEAAKDEQAFVEGQISTIETKIRYAEIVNSDAVAADEVAIGKTVTVQEVGETE
                     EEVYHIVGAAGADAFANKISNESPIGHALIGKKTGDVATIETPAGSYDVKILKVEKTK
                     "
     gene            complement(13095..14915)
                     /gene="mltG"
                     /locus_tag="U1087_000459"
     CDS             complement(13095..14915)
                     /gene="mltG"
                     /locus_tag="U1087_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HEM4754972.1"
                     /translation="MTKDTNEKNTQSSGFRDQILRDLEELKVKRLAEQSADVLVDKRN
                     NEVINELQPSLAEEKAPHRETEIVKVEGIAFPDSYLSEEQQESEVMTESIEEPTSETL
                     ATPETFVIEKEVVSSPVPQDTVERNLEKLRNLVAANTAGFDEVPSSSSVSEPVESVLP
                     GNSPLEDTFLEFPTEDVSAVTGDTEIISLEETIIAPKTTAIVPEVDKQMQETQPRRRT
                     THRTSKQRRKKQDNAAKHIVSVIMSIVVVAVLVTGVTGYMWVKSSLEPVDAKATETIQ
                     VEIPEGSSTLEIGKILVDNKLIKNATIFNYYSKIKSYNNFQSGFYNLKQNMSVDDIAK
                     ALQESGTPTAQKEAAGKILIVEGYTLTQIAQAITDNTKTEDKNDKTPFTTEQFMATVT
                     NQDFINRMVATYPKLFASLPAADSGVIYQLEGYLFPAVYEYSDETTIEELVEQMIVAM
                     DNRLQPYYETIAAKNLTVNEVLTLASLVEKEGSTDEDRRNIASVFFNRLNAAMPLQSN
                     IAILYAQGKLGQETTLAEDAAIDTSIESPYNIYWTPGLMPGPVDSPSLSAIEAVINAN
                     TTDYLYFVADVTTGSVYFTNNIDEHNQNVAKYVNAHLDNE"
     gene            complement(14987..15472)
                     /locus_tag="U1087_000460"
     CDS             complement(14987..15472)
                     /locus_tag="U1087_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM4754973.1"
                     /translation="MEIRFATPSDLEQVVLIENANFSKEERIAESVLATYLNTLSKTC
                     LIMEHDGEIAGYLLSCPSVSQTVTDDIFYLTESDMPTGSHLAIASLSVADSYKGQGVG
                     TLLLAAIKEVALAGGFEGVSLTCKGYLISYYEMNQFEDFGPSLSQFGGQRWSDMYWKA
                     L"
     gene            complement(15528..16859)
                     /locus_tag="U1087_000461"
     CDS             complement(15528..16859)
                     /locus_tag="U1087_000461"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015511317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HEM4754974.1"
                     /translation="MTKTYHFIGIKGSGMSALALMLHQMGHKVQGSDVEKYYFTQRGL
                     EQAGIQILPFDEKNITADVELIAGNAFRPDNNVEIAYADAQGYTYKRYHEFLGEFMKG
                     FTSLGVAGAHGKTSTTGLLAHVMRNITDTTFLIGDGTGRGSANAQYFVFESDEYERHF
                     APYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQVKKALFVFGEDEQLRRITANA
                     PIYYYGLEDNNDFVAYDLKPSTSGSQFKVRHGEEELGEFQIPTFGKHNVMNATAVIAN
                     LYIAGFDLQLVAEHLKTFGGVKRRFTEKIVNDTVIIDDFAHHPTEIIATIDAARQKYP
                     SKELVAIFQPHTFTRTIALLDEFADALNGADAVYLAQIYGSARETDNGQVKVEDLAAK
                     INKKGGLVTVENTSPLLDHDNAVYVFMGAGDIQSYEYSFERLLSNLTNNVQ"
     gene            complement(16861..17523)
                     /locus_tag="U1087_000462"
     CDS             complement(16861..17523)
                     /locus_tag="U1087_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754975.1"
                     /translation="MIRHEKRFPLVADDEVLVGENPIMSLYDESDLISNIRGPYQEKE
                     FSWSTDSQRVASAKPVAQTEDELLPPLFEAKPSHYSRKERLQQLTKTKPSPVKTQGQL
                     AREQAREDLKKKRSATYLRDEKPAPAKVVVKPPVVSTTESKAGRLTRLADNLRQTDYI
                     LADMPAVYSLKKEDREQEQVIKKNSYDFLRKSQVYNYPERRQQRDRQVAQELNLTHIE
                     EG"
     gene            complement(17602..20694)
                     /locus_tag="U1087_000463"
     CDS             complement(17602..20694)
                     /locus_tag="U1087_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM4754976.1"
                     /translation="MGRMMPGRIRQEGIDLYEAGKLTVLQSENGKLELDIAGERFVYS
                     DEDSDLQCSCHLFQSKGYCQHLAATEYFLKNDASGKDMKQSLKEDGEQHKETVRRTYF
                     GGLFLDEILRPEPELGLKYQLSVEGSLLPYDRQIDWTLKITRLPDTRSYIVRDIGAFL
                     RIVKANGHYQIGKNYYEQVTYENFDEPSQALLDFLWALVPEKVGIDSDILTHFGRHFR
                     LPQAYFEEGLELLNQLEHFNFSYQQQSYSSLMVLPLTGEEGLYHFEVTVHTQMIEMAI
                     HEKTVRPLFHGRYLLVNGTVYSVNRHQEHLIYQISELVPTESGLRKVQVDFPDQNRLA
                     LSLLDLQTIGTVKAPKRFIIHDFKPEFHIQMEANESLSLQLVLDFDGRKVRSEEDLAH
                     LPFASHFQHLERVYQAIRLAGFRGIYHAQRAALSQQELYPFFQQQLPILQKMGQVHLA
                     EKLQALYIEAKPQLEIVRNGSLLDISFDLSGIEQSEIDQAITALLNQEDHYTSPSGKV
                     FVFDEETKKISQTLIYLRARHGKEGQVQVHALAGYQLAQSLSQFNQVSFSKEFEEMAS
                     YLAQPDLFPLPAVEVTTSLRDYQQTGLKWLTMLDTYGFGGILADDMGLGKTLQTIAFL
                     SSRMTKDSKVLILAPSSLIYNWLDECKRFAPSLDVAVVHGNKEQREEIIANGHQVLVT
                     SYPSFRQDVALYRQERFDYLILDEAQVMKNAQSKIAQLLREFEVGNCFALSGTPIENH
                     LTELWSIFQIVLPGLLPGKQDFGKLAAKDIARTIQPFVLRRHKEDVLQELPDLIEVNV
                     LNELTDEQKAIYLAQLQQMRTQIAGADDAQINRSKIEILSGITRLRQICDTPSLFMEE
                     FSGESGKLNSLKELLLQLKEGEHRVLIFSQFRNMLEKIEEQLVEIGMTSYTLTGSTPA
                     NQRQEMTQAFNAGSRDAFLISLKAGGVGLNLTGADTVILVDLWWNPAVEAQAISRAHR
                     MGQTEKVECYRLITRGTIEEKIQELQENKKNLVKTVLDGNESRANLTVEDIREILGIE
                     "
     gene            complement(20834..21142)
                     /locus_tag="U1087_000464"
     CDS             complement(20834..21142)
                     /locus_tag="U1087_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4754977.1"
                     /translation="MEFFGELLVEFLTGLADFDEKKHPPFGIRYWLGWLGVLIHVLLL
                     ALLTCVTVFFFKFFLVGKGLINVVVAVVFLLFALFWLWKSGKTILKMWQATIYYLAIH
                     "
BASE COUNT         6242 a         4916 c         4070 g         6377 t
ORIGIN      
        1 agcgcagtga ttgattggct ttaacagtcc agtggacggt taatattgag gcgaacttgc
       61 ttcgccctat ctccagcctt caaaggcttc caaacctttt gaaagagtac taaaggcaac
      121 ctaaaaacct atatttatac agaacaaaaa gtaggttgcc ctacttctgc ttatttcttt
      181 tcaaactaaa cctgtccggc acaggatctt ccccaccttc cacaaaggga tgacagcgac
      241 caattcgagc caaccccatc aaaaagccct tgagtccatg tttttgtaag gcctcgatca
      301 tataagccga acaagttgga cggtagcgac aagagggcgg aaaaagggga gaaataaatt
      361 tctgatagaa tcggaccaag ccgatcaaaa gtctagtcat tattttttta ctggcttagt
      421 aacagccaga gtatgtagtt tactgatgtc tttcttattg agcttgcggt attctcctgg
      481 acgtaggccg gtcaagtcaa gattaccaaa gcgagtacga gacagcttgt ctacctgcaa
      541 gccgacagcc tcaaacatct tcttaacctg gtggtttcga ccttcatgga ttgttaattc
      601 tacaactgag cggttcttaa cagggtccac ctttataatc tcatacaccg caggcttagt
      661 ctttttacca tcaatgacaa caccacgggt caatggacgc aagacttcct tgttggcaac
      721 ccctttgaca cgcgccaagt aaaccttgtc aatctcatta cgtgggtgaa tcatttcgtc
      781 tgtaaaatca ccgtcattgg tcaaaatcaa gaccccagat gtatcccagt ccagacgtcc
      841 aactggataa atccgctcct taactgttgg caacaagtcc acaactgtct ttcttccctt
      901 gtcgtctgac acactagaaa taacacctcg tggtttattg aggagatagt aaaccttctc
      961 ttcgttataa attggttgtc cctcaacctc taccttatca cccgatttga taactgtccc
     1021 tagctcacga acaacctgac catttacagt aactagtcct tgcttaatta attcttctgc
     1081 cttacgacga ctggcaactc cagcatgggc aatgtattta ttaattctca ttttctaact
     1141 catttctttc tacgaatagc tctgtttctt cttgaatcaa atctatttca gacacatcag
     1201 gcaattcttc tagactatta attcccatgt aatccaggaa ataatccgtt gtcacataga
     1261 gatttggtct accaagaacc tctttcttac cattctcacg aatgaggtca aaggcctgta
     1321 atttactgat tgcaccactg gaattgactc cgcgaatatc atcaacttca atccgagtaa
     1381 tgggttgctt ataggctacg attgataagg tttccaaaag agcccgtgac atagtctgat
     1441 tgattggtgt tttggcatag attcgcaaaa ggtttgcata ttctttttta gtaaccaatt
     1501 tgtagcgatt ggaagactct aagatggcta agcctgaggc tttgtctgcc atatatttct
     1561 cactaagttt ctctaactgc tggctgacag ctgtcggctg catttccaac atctctgcca
     1621 aatttcgtaa cgtcaagcca tcctcacctg ccacaaagag caggacttcg atttcagcta
     1681 agcgattcat cttcactcct tactagataa atatctccaa aagtctctgt ctgttccaag
     1741 acgatttcat gaaccttgac caattccaaa gtcgcaagga agatcgtaat catttcatta
     1801 acatcttgac tttcttgaaa aagctgacgg agttcaaggc gtggaccagt ctcgaaacga
     1861 ctgcgaacaa agtccatcat gtcttcgatt ttatattcat cacgggcaat ggtcgcatga
     1921 gactgacgga ggcttgcctg tttttcagcc attactttag aaaaagctag gaaaatgtca
     1981 atgacggtct tatccttggc taattgtaca tcatcataaa tcaaatctaa tttgggtttt
     2041 gaaaaatagt tcgcccgttc atcatgttgc tctcctaatt tctcactgag aagtttgaac
     2101 ttgcggtatt cttccaactg gtccaagagg tccatttcag gatcatcttc gggagcaatt
     2161 tgcttaacaa ccttcggcaa taaccgacga cttttgatga ccatcaattg actagccatg
     2221 agcatatatt ctcccgctac ctctaaacgc atggcttgca aggtagcaat gtaggccaaa
     2281 tattgctcga taacctctgt aatcggaacc tcgtaaatat ctacttgata cttggacacc
     2341 aggtgtagca ggagatcaag tggcccttca aaatctttta attttatatc cattatctaa
     2401 atttttccaa actcatgctt gttttcagtc ccaactgctt ggcgatttgg tccaaggatt
     2461 ttccttcgtc tatctgtttt agaatatact gctctcgcaa tttttgggct gtccaatcag
     2521 gcttgccgat ggactggaca aattctgtca gacgattaaa aaaccattga cgagaatagg
     2581 tctgtccctt cttatcgaag acatagcgtc cagacagatg agactccata tagggtatca
     2641 attccttggg cagagtgagc acccgcttgg ctcctccctt ctcaactgtc aggacttgaa
     2701 aatccagatt gacctgctga ctagtcagct ctgctatttc acttggcgtc aaacctaaat
     2761 atgctatcaa aagtgcgatg agctgacctt ctagccaagg actttcttga aagaggagag
     2821 ttaaatcctc acgctccagt ttctttttga cgcttgctgg acctgacatc gtttgcaatt
     2881 tataaaaacg atccaggaga ttattttcat aaagaaagta gagaaattga ttgaccgctg
     2941 acatttttct tttctgagca gcaggtttca agtcgagaag agactgctga tagaccaaaa
     3001 gagactgttg gcaaatctcc ccccttgtta ctgtcacaaa ctgctgcagg tcataggtat
     3061 aggacttttg gctgttgaca ctgacctttt tgctctggat aaaagattca atcgcctgct
     3121 tcatttcttg ccttcttttg acgctagggg gaaattatgc aagagagcat tgattgcctt
     3181 taagatggat tttcgtgtaa tgattcccat aaattctcta ttttccccaa ggacgggtaa
     3241 gaaagattga tctactagct tgcgcatcac ttctgtcaaa tcataatcca gaccaaccgt
     3301 ctcttcatct gtctttacaa tcacagaaat atctctgttt aactcatcat ccgatagttc
     3361 attttcagct tgatatttaa tgatttccgt caagccgatg gttccaaaaa agcggccatc
     3421 ttctgttacc acaggtacgc gtgaataggt catgtgactg agtagcagtt ttgcgtggtc
     3481 aatattatgc gtatcaataa ttactgccaa tttatccgct ggtgtcaaga aagtttcttc
     3541 ctggtccaat aaaaaggctt caaattctct tgcaatcatc ttgaaatatc ctttgtcaat
     3601 gctgggtaaa gttggtgctg tcgattgtag taatccacat ggaagtgatc atcatagatg
     3661 gtcacaagag catagagaca ttctctgacc aaaccacgag gttgactaac ggagccagga
     3721 ttgaggaaga gggtcttgcc acgcacttcg gcatcaggca catgcagatg cccatacaaa
     3781 caaatatccg catcaacttc ctgtgcccaa taatccaacc gctgccagcc gtaattaatg
     3841 ccataaagat gaccatgagt ttgagcgata gtcacaccat ccaattgagt aatgagctgg
     3901 tcagggtaac caccaaaata gtcgcagttc ccattgacca cttgaatgcc gtcccacaaa
     3961 ctatcttgac tatccagctc cgaatcacca ttgtgaaaga tggcatcgac cttaccaaga
     4021 taatgatgtt taatatcctc tacaatctgt ctatccccat gagagtcgct catgactagg
     4081 attgttttgc ttgctcctgc catactggaa atgcctccac taatttttct agtgcttgtg
     4141 cacggtggga aatcttattt ttttcttcta aggttaattc tgccgaggtc ttacctgttt
     4201 cgcctacgag gaaaagtgga tcatatccaa acccattttc cccacggagg tccataccga
     4261 taaagccttc ccagtccgct tcgacaacca aactatcacg atttggagcc gccataacta
     4321 gggtgcagtg gaactgagca gaacgatctt tcagttcaaa taccatggcc aactcgtgca
     4381 agagtttggc attattgagc tcatcggtgg catctgggcc tgaaaaacga gcagaccaaa
     4441 ctcctggcaa accacctaaa gcatcaacct tcaaacccga atcatctgcc aagaccatct
     4501 tgcctgtcag ctctgctatg gtttcagcct tgagccgtgc attttcctca aaagtcatcc
     4561 ctgtttctgc tacatctggc aggtcaggat agttgttgag gttctcgacc tggtagccaa
     4621 aacgctcaaa aaacttacgg aattccttgg tcttaccttc attttttgta gcgatcaaga
     4681 tgatatctcc tacgcttgcc aatcccttgt cttgaccgaa gaaatctgcc gtgctaaccc
     4741 ctgcatgtgg cagatgaacc aagagaagtt tgtcattctc tgttaccaga atagctcctt
     4801 ggtgttggag ggccttgaac tgacgattgt ttaactcatt caaagtatca caggcaaatt
     4861 gaaagagggc aaattcagac tgaagtttaa tcacttcaat gttgacacac tggttaaaat
     4921 tctcatcttc ataattacct gcaatcagtt tgtcaaacaa ttgaccaatc tggtaaattt
     4981 cctgctctct tccattttca ccaaatgaac caaatagatt ggcaaagctg gcttttccaa
     5041 taaaccaatt gtgttcatct ctgtattcgt atatcttgtc tgtcatagtt ctacatgctc
     5101 cacatgaata tcaatgccca tccagctttc agctatttct ttaaaagctg ccggactagc
     5161 tgttgtgtaa aattggtgct gaatagcctt ttcggtacgg ctgcggttga tttgaaaata
     5221 atttaataaa acagaaatat ctcgcgcgca ctctgcccca ctgtcaatca acttgacatc
     5281 cttgcccatg gcattttgga tgatagggcg aagcagagga taatgggtac atcccaagac
     5341 caaggtatct actttcccaa caagtggtcg aagtgtctca taaacaacct ttttggcaag
     5401 actggattgg tggctattgg actcaaccag tggtgcaaat ttgggacagg ctaggctgtc
     5461 tacctgcgtt tccggagaaa gggcctgaat cttttgtcga taaatatctg attgaatggt
     5521 catagccgtt cctaagacac caaccttacc agtttgcgtt gccttaatag ctgccgaagc
     5581 acctggtaaa ataacaccca aaacaggaat atccaacttt tccttgactt cttcccaggc
     5641 taccgctgtt gccgtattgc aggcaaagac aatcattttt acattttttg tcaaaaggaa
     5701 attgaccaat tgccaagtat attctctgat ttgttccgct ggacggggtc cataaggtgc
     5761 ccgtgccgaa tctccgatat aagcgatttc ttcatgggga agctggcgca ttaactcacg
     5821 cgcaaccgtt aatcccccca cacctgaatc taaaaaacct attggtcgat tatccataat
     5881 actgagaata gccagaaaat ctgactagcc tttcttttct actcaaaaaa tgggatctgg
     5941 gaatgaatat cccagtccca gtttgattat tttttcttgc ttgccacttt ttgttggctc
     6001 ttgatttggc gaagtacttg ttgtactttt gcctcgcttg gtttttgccc catttggctc
     6061 atcatcaaac gcaaagcatt ttcatccaaa actggcttgt cagcaatgta gttttccact
     6121 tgtttgcgtg acaagtaaat acccaaggct acaccacctg caaatgccaa tacaataagt
     6181 aaaattgcta aacctaagtt catttgtcaa tctcctgact cttctaaaaa taattcattc
     6241 ggaattgccc tgcgacaatc tcttaatgaa tctattatac caaatttagc aggcttttcc
     6301 aagacttacc tgtcaaaatc aaaaccgtaa atggtcgcga aataatcctc tggtgtttca
     6361 gcacgacgaa tcatacgcgc tgtgccatct tcctgcaaaa ggatttcaga ggaacgcaga
     6421 cgaccgttgt agttgtagcc catggagaag ccgtgggcac cactgtcatg aatgaccaag
     6481 gtgtctccta cttctgcgcg tggtaattcc cgattaaccg caaacttgtc gttgttttca
     6541 cagagggaac ctgccacatc cacaacttcg attggcgcat ctgggcgcgt gatattggtg
     6601 atatggtggt aggcgccata gaaggctgga cgcataaggt ttgcagccga agcatccaca
     6661 cctatataag tccgataggt ttccttacga tggagcacct ttgtaatcaa gtgaccgtgt
     6721 ggcgccaaca taaagcgacc caattctgta aagattttaa tatgtcccat accagctggc
     6781 gtgagaattt cctcataaac cttacggaca ccctcaccaa tgacagcaat gtcgtttggt
     6841 tcttgctcag gacgataatt gactccaatc ccacctgata ggtcgatgaa gtccaaggtc
     6901 acatctgttt cctcacgaat ttccaaggcc aattcaaaaa gttgatgagc taagacagga
     6961 tagtagtcat ttgttactgt attcgaagct agaaaggcat gaataccaaa ttccttgaca
     7021 ccaagctctt ttagttcctt atagcctttc atcaactgtt ccttggtcat cccaaactta
     7081 gactcttctg ggtggtccat aatatccgtt cccagcgaga agaccccacc tggattgtaa
     7141 cggaggcaga ccgtttctgg gataccagca agatttttca aaaactcaat atgctcgtag
     7201 gcatcaaggt taatggtcgc cccaacttta cgagcataga caaactcttg cgcttgggtg
     7261 tcatttgatg tgaacatgat gtccttaaag cccaattttt cactcatgag tacttctaca
     7321 tccgtcgcac agtccactcc acaaccttct tcttgtaaaa ttttcaaaat agcgggtgtc
     7381 ggtgtcgcct tgaccgcaaa atattcctta aagcctttgt tccatgcaaa tgctgcattg
     7441 agggcacggg ccttctcacg aatgcctttt tcatcataca aatgaaaagg agtcggaaat
     7501 tgctccgtaa tggtttctaa aacttcttta ctaacaaatg gtgtcttggt catgtcacta
     7561 cctcatcaaa tatttttcct attatatcac aaatatgtga ggaactgtag ctttcaactc
     7621 caccaaatac ttgcaaaata aattatgagc gctataatgt gattatcatt aaaaaaggag
     7681 taatatatgt caacattaga ttttgatttt acagaacgct tgtatgccaa ctatctagct
     7741 aatccaagcc tacaggcaac cgaaaatgcc gttagccaca acggactttt gaaatcctta
     7801 gaaacacgcc aaagcgccat cgacaatgac tatgtctttt caattgactt gaccaaggac
     7861 gctgtttcaa accaaaaggc ttctggacgt tgctggatgt ttgctgcatt aaacaccttc
     7921 cgccacaaac tcatctctaa cttcaaactg gagaattttg agctatcaca ggcccatacc
     7981 ttcttttggg ataaatatga aaagtccaac tggttcctcg aacaaatcat tgccacaact
     8041 gaccaagaaa ttggtagccg taaggtaaaa ttcttattgg atacccctca acaagatggc
     8101 ggtcaatggg atatggttgt tgccttattt gaaaaatatg gtgttgtacc aaaatctgtt
     8161 tacccagaat ctatctcatc cagtgccagc cgtgagctca atcagtacct taacaaattg
     8221 ctccgtcaag atgcacaaat cttgcgtgac ctccttgcaa aaggagcttc tccggaagag
     8281 gttcaaacac aaaaagaaaa cttgcttcaa gaaatcttta acttcctagc cgtcaacctt
     8341 ggactccctc cacgcagctt tgattttgca tatagagata aagacaatgt ttatcaccgc
     8401 gatacaaatg tgacacctca ggcattctac gagaaatacg ttggtttgaa actatctgac
     8461 tatgtctcca ttatcaacgc tccaactact gataaacctt acaataaatc ttatacagtc
     8521 gaattattgg ggaacgtcgt tggtgcccct gctgtccgct acctcaatgt agaaatgaac
     8581 cgttttaaag aactagctat tgctcaactc aaagctggtg agtccgtttg gtttggttcc
     8641 gatgtcggtc aaagcagcaa tcgccaaaca ggcatcatgg caaccaacac ctacgacttc
     8701 tcttcaggtc tgggtatcca tttccatcaa gacaaggctg gaagattaga ctactccgag
     8761 agcttgatga cccacgctat ggtcttaact ggtgttgatt tagacgataa tgagcaacct
     8821 ctcaaatgga aagtagaaaa ctcttggggt gacaaggttg gtgacaaggg atacttcgtc
     8881 gcatcagata gctggatgga cgagtacact tatcagattg ttgtccgaaa agaattcctc
     8941 acacaagaag aattagcagc ttatcaagct caaccacaag tccttgctcc atgggatcca
     9001 atgggagctc tagcataaca aacgacatat aaaaaagagg acatccctct tttttatatg
     9061 tcataattag tctctactca aaccaccaaa gatacggagt aggttgagga agaggttgat
     9121 aaagtcaaga tagagctgaa gcgccatgga tacgacccaa ccttggccaa cattaccacc
     9181 agtttgttcg aaaacattgc ggatacgttg gttgtcataa gcaatcaaac ctgagaatac
     9241 caaaacagaa atgatagaca tcataaagct tagaccagag ctacgaagga agatattaat
     9301 aacacttgca ataataattc cccatagagc tgcacgcaat gcctgagcca taccagaaag
     9361 atccttcttc gttgtcatcc caattacagc catgatagca aacataagag ccgctgacac
     9421 aaaggcaaga acaactgttt cgctggtata gaacatcaag atcatgctga tggtaatccc
     9481 atttgttact gagtaggcaa gaaacattgg tagagccatt gggctatttt tagctgccat
     9541 tgctgaagca gaaacaacca aggcaatctg accaatcata atcagcatca tgatgatgga
     9601 acctgcactc agcagactaa gcaataaaga ttgaaagacg gtcacagcca agaaagaaac
     9661 tagagctgac agaccaattc ccatggcaac cacaccataa attttaccga agaaacggtt
     9721 gagggcggta ttatccacct gattaataat aaatgaatcg ttattcatac tattctcctt
     9781 taaatcatct tattgaaaac ggaagacctt acgatttttc cacttgtgtt gtaagggcag
     9841 actccattct cttactgccc aatacttatc cacacatgtc acaatccagg attccttgta
     9901 gcgaggagga gcgattgtcg caccaaacat atgcttcaca atgaggtctt cttctagttt
     9961 attgagttga atgagtttct gagcattgcg tttagcaatt cgtggatgaa cccaagcatg
    10021 gctcttgtta aatttggtat ctctccagtc atagaagaat aaatcatgca atagaccacc
    10081 acgagctgtt gacttggcat cccaaccaaa ttttttcgca atcttatagc ttgtataaga
    10141 gacattgatg gaatgttcca agcgcgtgga gtgataatga tgaggaatct tccccaattt
    10201 ttgcaccttg ggtgtggcaa tcaagtgccc cacgtaatgc atgtattatt tatcttgttt
    10261 atatgcaacc attcgttaac ctcgttggaa tattatacca cactatagta caattggctt
    10321 aaataaagct aaacaataga atacccgccg caattgctac attgaggctt tccgcctgcc
    10381 ctggcatggt aatatggaca agttgatccg cctcatcggc tacaaaagtt gaaattcctt
    10441 gaccttcatt tcccatgacc aaggcaaaac tcggatttgg cgtaacttcc ttatagtcaa
    10501 ccgactgact agagagggtt gttgccaaga tttgtagctg attgcttttt aaagcagaaa
    10561 aaatagcagt catcggcatc cgataaactg gcaagtggaa atgactccct tgcatggaac
    10621 gcagaacttt catattgtaa atatctgccg acttatccga tagaaatact ccatcaaaac
    10681 cagctgcatc agctgtacga atcatggtac caacatttcc agggtcctgc acatcttcca
    10741 gaaccaaaaa ttttccatct aaagtctcag gtagaagttg gctcggcaaa gcaagttgag
    10801 ctactacccc ttgcggtgtc cgtgagtctg ctaaatcctg cataatatct gaactaacaa
    10861 ctgttacatt ggataagcca gcaacccgat gaacatgttc ttctgatacc aagatatgtt
    10921 cgataggtac tttggctgcc aaagcctcct ccaacaaatg ccaaccttca atcaaataag
    10981 aagaagtacg gtattttttc tgttgtaatt tcttaacctg cttgaccaaa tgattggcct
    11041 ttgagcgaat gatctccatg aatgcccctt tttcttttac tgctcagcaa cttcaatttc
    11101 ccaacggcta aatcaattat cttgattttt gaacagtctt acccaaccat gatataataa
    11161 agtaaatgtc ttgtcaaaag gagaaactta tgcgaaaggt aaaaatgatt gcatctggtc
    11221 gtgtgcaagg agtcggcttt cgttggtctg ttcaattttt agctgtggaa ataggcgaca
    11281 tctacggcag agtttggaat aatgatgatg gaactgtcac cattttagct cagtcagata
    11341 atgctgagaa gctcagccat tttatccatg aaattcggaa agggccttct cgtatggcca
    11401 aagttaccta tctagatatc accctagcca acttcgaaga ctataaggat tttcaggtgg
    11461 cgtatagata aaacttgtat attttgaaca aaaaaagtaa aatagaatgt atcttgtaaa
    11521 aaaaggaatg tatcattttg aaaaagaata aacgaatttt attaacaggt ctggccctgt
    11581 ctacgctagt atttctatca ggatgtgtgc agacaaagaa cggtgttcct actggtgaag
    11641 gttgggtcta caacttcctt gttgccccaa tgggaaacct gattaaattc ttcgcggaaa
    11701 accaaggact cggtttcggc gttgctatta tcatcgtgac attgattgtt cgtctcttca
    11761 tcatgccact aggtatttac caatcttgga aatcaaccta tcagtctgag aaaatgaatt
    11821 acctcaaacc aattttaggt ccaatccaag aacgcatgaa aaatgcaagt tcccaagaag
    11881 agcaattagc tgcccaacag gaatactttg ctgctcaaaa acaatatggc gtcagcgtat
    11941 ttggtggaat gggctgcctt cctatcttga ttcaaatgcc attctttacg gcactcttct
    12001 atgcagctcg ttacacggaa ggaatctcag aagcaacctt ccttggtatt gatctcggtt
    12061 ctgcaagtct cattctaaca gctattgctg gtatcctcta ctacgctcaa tcacttctga
    12121 tgcaagtcgg tatggacgaa gaacagaaga aacaaatgaa agctgtggca atcatgaacc
    12181 caattatgat catgatgttc tcatttgggt ctcctgctgg tgtgactctc tactgggttg
    12241 tcggtggtct cttcggtatt cttcaacaag ctattacaaa cttcattttg aaacctcgta
    12301 ttcgtaaaca agtggaagag gaattcaaaa atatcacagt gtcagcaact cctcgtaaaa
    12361 cgaaggacgt tactccaact gcttcagcag ttattgaaga aaagacatct aacaagaaga
    12421 gaaaccgtaa tgcaggaaaa caacgttcta gataataaac actaaaagat tggaatttcc
    12481 aatctttttt agcaccttcg tgaataaaaa gagagaatct ttcgactctc tccacacctt
    12541 atttcgtttt ttcaaccttc aagattttta catcataact accagcaggt gtttcaattg
    12601 ttgcaacatc tcctgttttt ttaccaatca aagcatgacc aattgggctt tcatttgaaa
    12661 tcttgtttgc aaaggcatct gcacctgcag caccaacgat atgatagact tcttcctcgg
    12721 tctcaccaac ttcttgaaca gtcacagtct taccaattgc tacttcatcc gcagcaactg
    12781 catcactgtt tacgatttca gcatagcgaa tttttgtttc gattgttgag atttgacctt
    12841 caacaaaagc ctgttcatct ttagctgctt cgtactcaga gttttctgaa aggtctccgt
    12901 aagaacgagc aattttaata cgttcaacaa tttctggtcg acgaactagc tttagttcct
    12961 ctaattcttt ttctagtttt tccttttctt ccaaggtcat tggatatgtt ttttctgcca
    13021 tttgtctttc cttttctttt atttttcatg aaaacaaaat tatgtggaaa accacataat
    13081 tttgttgtaa gaatttactc attatcaaga tgtgcattta catacttagc aacgttttgg
    13141 ttatgttcat caatattatt tgtaaagtaa acacttccag ttgtaacatc tgctacaaag
    13201 taaagatagt ctgtcgtgtt ggcattaatc actgcctcga tagccgaaag gcttggacta
    13261 tccactggtc caggcatcaa tcctggtgtc caataaatat tgtatggtga ctcaattgat
    13321 gtatcaatcg ctgcatcttc tgccagagtt gtttcttgac caagtttacc ctgagcatac
    13381 aagattgcaa tattggattg tagaggcatt gctgcattca agcggttaaa gaagacactt
    13441 gcaatgtttc gacgatcttc atcagtagaa ccttcttttt caaccaaaga tgccaaggta
    13501 agaacttcat ttacagtcaa attcttagca gcaatcgttt cataatatgg ttgtaaacga
    13561 ttatccatcg cgacaatcat ttgctcaacg agctcttcga tagttgtttc gtcgctgtat
    13621 tcataaaccg ctgggaagag gtaaccttcc aactgataaa taactccact atcagcagct
    13681 ggtaagctgg caaacaattt tggataagta gcaaccattc gattaataaa atcttggttg
    13741 gtcacagtag ccataaattg ttctgtggta aatggtgttt tatcattttt atcttctgtc
    13801 ttggtattat ctgtaatagc ctgagcaatt tgtgtcagtg tatacccttc aacaatcaaa
    13861 atcttacctg cggcttcttt ttgagctgtc ggagtgccac tttcttgaag tgctttggcg
    13921 atgtcatcca cagacatatt ttgttttaaa ttataaaaac cactttggaa attattatag
    13981 ctcttaattt tagagtagta attaaaaata gtagcattct taatcaactt gttatcgact
    14041 aaaattttac caatttctaa agttgaagat ccttctggaa tctctacctg aatagtttct
    14101 gtagcttttg catcgactgg ttccagacta gattttaccc acatataacc agtaacacct
    14161 gtcactagaa ctgccactac aacaatcgac atgataacag agacaatgtg tttagcggca
    14221 ttatcttgtt ttttacgacg ttgcttgctt gttctgtggg ttgttcttct tctgggttgt
    14281 gtttcctgca tctgcttgtc tacttctgga acaatagccg ttgtctttgg agcaataata
    14341 gtttcctcta gtgagatgat ttctgtatca ccagtcacag ctgacacgtc ttccgttgga
    14401 aattctaaaa atgtatcttc taaaggagaa tttcccggaa ggacagactc tactggctca
    14461 gaaactgacg agcttgatgg tacttcatca aatcctgccg tattagcagc cacaagattc
    14521 cttaatttct ccaagtttcg ttcaacagta tcttgtggaa ctggacttga aacaacttct
    14581 ttttcaatca caaaagtctc tggagtagcc aaagtttctg atgttggctc ttcaatactt
    14641 tccgtcatca cttctgattc ttgctgttct tctgacaagt atgaatcagg gaaagcaata
    14701 ccttctactt ttacaatttc agtctctcta tggggggctt tttcttcggc aagactaggc
    14761 tggagctcgt tgataacttc attattacgc ttatcaacaa gaacatccgc tgactgttcc
    14821 gccaaacgtt tcaccttcaa ttcttccaaa tctcgtaaaa tttgatcgcg gaagcctgaa
    14881 gactgcgtgt ttttttcatt cgtatccttt gtcacgctgt tactcctttc acacagttac
    14941 tatacattat atcttaaagg cttatgaatt gcaagaactt ccctttctac aaggctttcc
    15001 agtacatatc actccacctt tgtcctccaa attgcgacaa ggaggggcca aaatcttcaa
    15061 actggttcat ttcatagtag ctaatcaaat accccttaca ggtcagggaa actccttcaa
    15121 atcctcccgc taaagccact tcttttatgg ctgccaacaa aagagttccc actccctgtc
    15181 ccttatagga atccgctacg gatagactgg caatagctag gtgactgcct gtcggcatgt
    15241 cactctctgt caagtaaaaa atatcgtctg taacagtctg cgaaacagag ggacaggata
    15301 ataaatatcc tgctatttcc ccatcgtgtt ccattattaa acaggtttta ctcaaagtat
    15361 tcagataagt agcaagaaca gactcagcta tccgttcctc tttagaaaaa ttggcatttt
    15421 caatcaaaac aacttgttct aaatccgaag gagtagcaaa acgaatttcc ataattttct
    15481 cccttatata gcggaaaaac aggggccata ggcctccgtc tttcttttta ttggacgtta
    15541 tttgtaagat ttgacaagag tctttcgaaa gaatattcat aggactgaat atcaccagct
    15601 cccataaata catatacggc attgtcatgg tctaaaagtg gtgaagtatt ttcaactgta
    15661 acaagtccac cttttttgtt aattttagcc gccaaatctt ctaccttaac ctgaccgttg
    15721 tctgtttcac gcgctgagcc atagatttga gcaaggtaaa ctgcatctgc tccattcaaa
    15781 gcatctgcaa actcatcgag aagcgcaatg gtacgagtga atgtatgtgg ttggaagatg
    15841 gctaccaact ccttgctagg atacttctga cgtgccgcat caatggttgc aatgatttcc
    15901 gttggatggt gagcaaagtc atcaatgata acagtatcat tgacaatttt ctccgtaaag
    15961 cgacgtttga cacctccaaa tgtcttcaag tgttctgcaa ccagttgcaa atcaaatcca
    16021 gcaatataga gattggcaat aacagctgtt gcattcatca cattatgctt accaaaggtt
    16081 ggaatttgga attctcccaa ctcttcttca ccatggcgaa ctttgaattg tgaaccactt
    16141 gtagaaggct tcaagtcata ggcaacaaaa tcattattgt cttccaaacc ataatagtaa
    16201 attggagcat ttgccgtgat acgacgaagt tgctcatctt caccaaaaac gaagagagct
    16261 ttttttactt gcttcgcata atcattgaaa gcattgaaaa catcctctag actagtgaaa
    16321 taatctggat ggtcaaaatc aatattggta atgatgctgt attcaggatg gtatggggca
    16381 aagtggcgtt cgtattcatc ggattcgaac acaaaatact gagcatttgc cgaaccgcga
    16441 ccagtaccat caccaatcaa gaaggtagta tctgtgatat tgcgcataac atgtgccaat
    16501 aatcccgttg tggaggtctt accatgggca ccagcaacac cgaggctcgt aaaacctttc
    16561 ataaattcac ctagaaattc atggtaacgt ttgtaggtat agccctgagc atcagcataa
    16621 gcgatttcca cattgttatc tggacgaaaa gcattaccag caatcaattc aacatctgct
    16681 gtaatatttt tctcatcaaa cggtaaaatc tgaatcccag cttgttcaag cccacgttgt
    16741 gtaaagtagt atttctctac atcactcccc tgaaccttgt gccccatttg atgcaacata
    16801 agagcaagtg cgctcatacc tgatccctta attccgataa aatgataggt ttttgtcatg
    16861 ttatccctct tctatatgtg tcaaattcaa ttcttgtgcc acttggcgat ctcgttgttg
    16921 tctgcgctca ggataattgt aaacctgact ctttcttaaa aagtcatacg aatttttctt
    16981 tataacctgc tcctgttctc tatcttcttt cttcaaagaa tagacagctg gcatatcagc
    17041 gagaatatag tctgtctgac gtaggttgtc cgccaaacgt gtcaaccgac ctgccttaga
    17101 ttcagttgtt gaaacgacag gaggtttcac cacaacttta gctggtgctg gtttttcatc
    17161 tcttaagtag gttgctgatc gttttttctt caagtcttct ctagcctgtt cgcgagccaa
    17221 ctgcccctgt gttttcactg gagaaggctt cgttttagtc agttgctgaa ggcgttcctt
    17281 gcgagaataa tggcttggct tagcttcaaa cagaggaggc aggagctcat cttccgtttg
    17341 tgctactggt tttgccgacg caactcgctg tgaatcggta gaccagctaa attccttttc
    17401 ttgataaggt cccctgatat tgctaatcag gtcgctctca tcatataaac tcataattgg
    17461 attttctcca actagtacct catcatctgc gactagtgga aatctttttt catgtctaat
    17521 cataagtcat cctttcgaac ccttattata ccatacttag gccttatttc ctaattctac
    17581 gctgagtcaa ctgattccat atcactcaat ccctaaaatc tcacgaatat cctcaaccgt
    17641 caaattcgct cggctttcat tgccatcaag aactgttttg acaaggttct ttttattttc
    17701 ttgtaattct tgaatcttct cttcgattgt ccctctagta atcaggcgat agcattcaac
    17761 cttttcagtc tgccccatgc gatgagcccg gctgatagcc tgcgcttcca cggcaggatt
    17821 ccaccaaagg tcgactagga tgactgtgtc tgcacctgtc aaattcaagc caacgccacc
    17881 tgctttcaag gaaatgagaa aggcatctcg acttcctgca ttgaaggcct gtgtcatttc
    17941 ttggcgttgg ttagcagggg ttgaaccagt caaagtatag gatgtcatcc caatttctac
    18001 cagctgttct tctatttttt ccagcatatt tctgaattgg gagaatatca agaccctgtg
    18061 ttcaccttct tttagctgca agagtaattc tttcaaacta ttaagtttgc cactctcacc
    18121 actaaactct tccatgaaaa ggctgggggt atcgcagatt tgacgtaagc gagtaattcc
    18181 tgataggatt tctatcttgc tacgattgat ttgagcatca tctgcgccag ctatttgagt
    18241 ccgcatttgt tgaagctggg ctaggtagat agctttttgt tcatctgtca gttcattaag
    18301 tacattgacc tctatcaaat caggcaattc ctgaagaacg tcttccttat gacgtctgag
    18361 aacgaagggt tgaatggtcc gcgcaatgtc cttggctgct aatttaccga agtcttgttt
    18421 gcctggcaat aaacctggta agacaatttg gaaaatggac cagagttccg tcaaatggtt
    18481 ttcaatcggc gtacctgaga gggcaaagca attcccaacc tcaaactcac gcaggagctg
    18541 tgcaatctta gattgggcat tcttcatgac ctgcgcctca tctaaaatga ggtagtcaaa
    18601 gcgttcctgt ctatagagtg cgacatcctg tctgaaggat ggataggagg taactaagac
    18661 ttggtgccca ttggcaatga tctcttcacg ctgttctttg tttccatgaa caactgccac
    18721 atctaaactt ggagcaaacc gcttgcactc atctaaccag ttataaatca agctagacgg
    18781 tgccaatatt aaaactttgg aatcttttgt catccgactg gacagaaagg cgatagtttg
    18841 caaggtcttt ccaagcccca tgtcgtcagc taaaattcca ccaaaaccat acgtatccag
    18901 catagtcaac cacttaagcc ctgtctgctg ataatcccta agcgacgttg ttacttccac
    18961 agcaggaagc gggaacaaat ctggctgagc tagatagctt gccatttcct caaattcctt
    19021 ggagaaactg acttggttga attgtgacaa ggattgagcc aattggtaac cggcaagagc
    19081 atggacttgt acctgcccct ccttaccatg acgggcccgc aaatagatta gggtttgact
    19141 gattttcttg gtttcctcat caaaaacaaa taccttaccg ctcgggctag tatagtggtc
    19201 ctcttgattc agcaaggctg taatcgcctg atcgatttca gattgttcaa tacctgataa
    19261 gtcaaacgaa atatccaaaa gtgatccgtt acgcacaatt tctaattgag gtttggcttc
    19321 aatatataaa gcctggagct tttctgctag atgaacctgc cccatttttt gtaatatagg
    19381 caattgttgt tggaaaaatg gatagagctc ctgctgacta agagccgctc tctgggcatg
    19441 atatattccc ctaaagccag ctaaacgaat agcctgatag accctctcca aatgttggaa
    19501 atggctggca aaaggcaggt gagccaaatc ctcttcactc cttaccttac gtccatcaaa
    19561 atccaaaacc aattggagtg ataaactttc atttgcctcc atctgaatat gaaattctgg
    19621 cttgaaatca tgaatgatga agcgtttagg tgccttaaca gtcccaattg tctgcaaatc
    19681 cagcaagctt aaagccagac gattttggtc agggaaatcc acctgcactt ttctcaaacc
    19741 tgattcggtt ggaacaagtt cggaaatttg gtaaatcaga tgttcttgat ggcgattgac
    19801 actataaacc gtgccattta ctaagagata gcgcccatga aaaagaggtc ggactgtttt
    19861 ttcatgaata gccatttcaa tcatctgcgt gtgaacggtc acctcaaaat gatagagccc
    19921 ttcctcccct gtcaacggaa gaaccatcaa ggaggaatag gactgctgtt gataggaaaa
    19981 gttaaaatgt tctagctgat ttaacagctc caacccctcc tcaaaatagg cttgtggcag
    20041 acgaaaatgt cgtccaaaat gagtaagaat atccgaatct ataccaactt tctctggtac
    20101 caaggcccag agaaaatcca ggagagcctg acttggttca tcaaaatttt cataagtaac
    20161 ttgctcataa taatttttac ctatctgata atgaccatta gctttcacaa tgcgcaaaaa
    20221 agctccgatg tcccgcacaa tatacgaacg tgtatctggc aagcgggtaa ttttcaaggt
    20281 ccaatctatc tgacgatcat agggcaataa gctcccttca actgataact gatacttaag
    20341 ccccagttca ggttctggcc gcaaaatttc atctaaaaag agaccgccaa aataagtccg
    20401 acggacggtt tccttatgtt gttcaccatc ttctttcaaa gactgcttca tatccttgcc
    20461 tgaggcatca ttttttaaaa aatactccgt ggcagctagg tgttgacagt agcccttgct
    20521 ttgaaacaag tgacaactac actgcaaatc actatcctca tcgctgtaaa caaaacgttc
    20581 cccagcaata tccagctcca acttcccatt ctcgctctga agaacagtca gtttcccagc
    20641 ctcgtacaaa tcaattcctt cttggcgaat ccgccctggc atcatgcgac ccattctaac
    20701 tcctttatcc ttcaaccaat catcagcttt tctgtaaaat atatctaaaa tattatcttt
    20761 tcattatagc atattttcaa tttgaattgt ttcaataggt atcaaaaaaa caccagctgg
    20821 taaactggtg tctctaatga atagctaaat aataaatcgt tgcttgccac attttcaaga
    20881 ttgtttttcc gcttttccaa agccaaaata gggcaaatag caggaaaaca actgccacta
    20941 ctacgttaat caagcctttt ccaaccaaga aaaacttgaa aaagaagacg gtcacacaag
    21001 tgagcaaggc aaggagtaag acatgaatca gaactcccaa ccagcccagc caatagcgaa
    21061 ttccaaaggg agggtgtttc ttttcatcga agtctgctag accagtcaaa aactcaacta
    21121 gcaactcacc aaaaaattcc atactagcct acctttctta gctgtcggta atatttggtt
    21181 cgtcgaatca tcatcttgat agccttaaag gaaagtaagg ttagcatact agccacgaat
    21241 agacaaaaaa ggaatatcac aaccaatggc tgtttatact gatgatagac cataattgaa
    21301 ccaccagtaa aggcgataaa ataggatgcc aaagtcacaa aattgagcca aatgcaagcc
    21361 accagtccca accaataacg aaatccgaaa ggtttgtatt gactgtcttc ataaaataca
    21421 agaaaaaatg atgaaaaaga aagcaatatc aaaaaagaac gccaaatcgg aaccgctacc
    21481 ataccaacac ctccaagtcc attctagcat atttacgaat aattgcaaag agggagtggg
    21541 acagaactcg caaattgtta aaagagttcg tcaacaagtc cttatttcta gttgttgagc
    21601 tgaaa
//
LOCUS       DASFRC010000017        20853 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.017, whole genome shotgun sequence.
ACCESSION   DASFRC010000017 DASFRC010000000
VERSION     DASFRC010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 20853)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20853)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20853
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.017"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            132..509
                     /locus_tag="U1087_000465"
     CDS             132..509
                     /locus_tag="U1087_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NisI/SpaI family lantibiotic immunity
                     lipoprotein"
                     /protein_id="HEM4754978.1"
                     /translation="MKKKVFGLLALGSIMLTACSTSSAGLSFEEGYQIFHYKGKDYAV
                     SKQEVAEDSIQGTEVKFMEWPVVKEEGSVKKTVSLNNLYVTTNKEWAIGVQDGYYKVD
                     LEENVAESDRIDYQSVLENVDFT"
     gene            530..1432
                     /locus_tag="U1087_000466"
     CDS             530..1432
                     /locus_tag="U1087_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4754979.1"
                     /translation="MLLEINHLKKVYKDVTTVDIEKITVREGEIYGFLGPNGAGKTTT
                     MKMILSLVTPTSGEIFINKKDIRNDKKYLNQIGSMIEEPSYYPNLTGYENLLVFQKMV
                     GFDKNNIRPTLELVGLADEKNRKKLVKAYSLGMKQRLALAFALVKKPKILLLDEPTNG
                     LDPAGIHEIRELIVQLAKEKGLTVFISSHILPEIEHIADRVGIINHGRLVYEGEIEAI
                     KSNTWIEIGGDFSQKNIVQTLVELGTVEILSASESQVTLRDLDNDRLADLVSYLIENG
                     YRIFRVVRESETLEDIFLNLTKEA"
     gene            1434..2180
                     /locus_tag="U1087_000467"
     CDS             1434..2180
                     /locus_tag="U1087_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM4754980.1"
                     /translation="MNGVYIEWLKSRRTKSISIVIILMLVATLWNIATFISAFSSHPE
                     LRMAGTLFSNQNVDLLMFPIAVCVFASRIVGNEHEGQTFKLQIANGQSLTAIFRDKFF
                     FMLVSFVIMSAIEIMIIYLFGTQAGISISLQIIGIQFIGQILAIFSLICLYLTLAMIL
                     EKQGILLALGLLGGFLGIILNPKSYGFTSLLNPITGSGSLAPYKYQFLGDGTITYNLD
                     SQLLEKIVCYAIYCLILYLLAVLILRKKGN"
     gene            2182..2916
                     /locus_tag="U1087_000468"
     CDS             2182..2916
                     /locus_tag="U1087_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM4754981.1"
                     /translation="MKDYFLAEWTKTRKIQLLVIGIAFLSFSSMIGLGIYFANRDVLI
                     DGTQSLVLWGQLTFYNSTLLYPPMLAIIAGLLLVPEFERKTLDMLKANQVSMRKLYLG
                     KLMSSFLLILPIQLLLLLIFIVAAKIDGISFDLSLATHVKWIALSLLSSFPIITLQSY
                     ITVKTRNFSKGVGVATIGSMLNFVLIFINESFTKFFPYSQPMIGLRSRALQDMTFLEF
                     ILFITVNIVFSFIFYQLTIKNLENSK"
     gene            3052..3804
                     /locus_tag="U1087_000469"
     CDS             3052..3804
                     /locus_tag="U1087_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017650232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4754982.1"
                     /translation="MLLEINHLEKVYRTRFSKEETRALQDVDFKVEEGEFIAIMGESG
                     SGKTTLLNILATLDKPTRGSVILNNQDITKIKESKLADFRLRNLGFVFQDFNLLDTLS
                     IQDNIFLPLVLARESYQEMEKRLEVLAPKLRIQDLLKKRPFELSGGQKQRVAIARSLI
                     TQPQIVLADEPTAALDYRNSEDLLNLFEEINRDGQTILMVTHSANAASHAKRVLFIKD
                     GRIFHQLYKADKSNQDFAKEISLNMSALLGGE"
     gene            3805..5775
                     /locus_tag="U1087_000470"
     CDS             3805..5775
                     /locus_tag="U1087_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEM4754983.1"
                     /translation="MFYLKLAGQNIRKSMGVFAPFVLASLVLFTLICSMFLIMLSPVM
                     KTMGSGAISIGLGVIILTIFSVIMEIYSFNFLMKQRAREFGLYNMLGMNKKKVALIAS
                     LELMMIFLLVVVLGSVLAGVFANVLYLIFVNITHYSDLHFGIEPLAFVMTAFLFAGFF
                     FLLELLAIRTIGKTSPLILFRASEKGEREPKGNVLLAALGVFSLGMGYYLSLSSKAEG
                     LAVIYRFFIAVLFVIAGTYLFYISFMTWYLKARRKNKRYFYTPEHFITTSQMIFRMKQ
                     HATGLANITLLAVMAFVTIATTTSLYTGMSSMTGVLYPKETSITYKVSYRSQGVAAYQ
                     QSVLSHFPEKANDNLSYLTYQAGLVYDGGSDIVINPETIANPDFSKMAFTYFITQDDF
                     RKLGNDLPELAANQVAFMRPSEMPSLKKLVLGDQTFENVANLDQAIFPDITNTLNAAV
                     MVVSDDTVLDAVREYYESNNPQGYTVSLDYRVFTDLTDEEVASIGQQTGDSYNINDAN
                     GEFLGYAMQKSDFNNLLMGFTGSFLFTGFLLGISFLLGAALIIYYKQYSEGHEDKKSY
                     KILQEVGMSQQAVKKTINSQTLLVFFMPLAMATLHFIVALVMLKQMLMVFGVVSSSMI
                     YTVSGITLLAVVLIYFVIYKWTSRTYYRIIER"
     gene            5867..6106
                     /locus_tag="U1087_000471"
     CDS             5867..6106
                     /locus_tag="U1087_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin"
                     /protein_id="HEM4754984.1"
                     /translation="MAAITLKVSEQDKLFMQAMAKFEGVSLSELIRTKTLEALEDEYD
                     ARVADVAWAEYQADLANRIEPMTLEQMAEELGIEL"
     gene            6096..6353
                     /locus_tag="U1087_000472"
     CDS             6096..6353
                     /locus_tag="U1087_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEM4754985.1"
                     /translation="MSYKVILSAKAQKQIRKMDKTAASLILRYLYKHIDGCDNPRQYG
                     KALTANRSGQWRYRIGNYRVIVNIEDDKLIVTSIKMRNGSI"
     gene            6392..7057
                     /locus_tag="U1087_000473"
     CDS             6392..7057
                     /locus_tag="U1087_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012961975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM4754986.1"
                     /translation="MKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAE
                     IKPDLVLMDISLPYYNGFYWTTEIRKTMTMPIIFISSSDDEMNAVMAMNMGGDVFVSK
                     PFSLGILDAKIGAFLRRVNQFSKSTDLSIDQFQLSLDGRFSNELEQVQLSPTETKILS
                     ALLERQGQIVSKEELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGVGY
                     LVK"
     gene            7054..7995
                     /locus_tag="U1087_000474"
     CDS             7054..7995
                     /locus_tag="U1087_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEM4754987.1"
                     /translation="MIAKFIREYRSFYFSYIVLATSFILLFFLYQLPTEFLQNALLLS
                     LTLLILLTVGLFWKFRNRMRALEDYVHEEALPLLNKPVDLAYLNLIEAEKEATREQLL
                     VYKSREEDLQAMVKMWSHQMKVPLAALSLMSQTDNLNQQDVNHQLLRLDNYMANLLNY
                     LKLTNHASDFRFEQVEVREVVVDLVKKYRNQFLQKDISVTIDGNWLLKSDRKWLSFAL
                     SQIIDNALKYNKTGGKVAIELNEGISISDTGIGILAEDIPRLFDEGFTGFNGREHQKA
                     TGFGLYLTKRVLNQLELAISVESQLEVGTSVTITKVQ"
     gene            8071..9579
                     /locus_tag="U1087_000475"
     CDS             8071..9579
                     /locus_tag="U1087_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
                     /protein_id="HEM4754988.1"
                     /translation="MSHHHVLQNGSDIRGIAIATDEYAVNLTPQATQEVVRGLIHWLT
                     QKPELAQTYQKGQLTIGIGRDSRLSGPDLVAAFTEEAVRLGVQLIDFGMATTPALFMS
                     TQYPQFKCHAGVMITASHLPHYFNGIKIFSENGGAEHEDIDFILSSSEDLPASDLGSV
                     TKADLITPYAQDLVGKIRTACGGQEKPLTGLNIIVDAGNGAGGFFAEKVLAELGADTT
                     GSQFLDPDGTFPNHVPNPDNKEAMESIRQAVLKQGADLGIIFDTDVDRAALVTKSGEI
                     LNRNNLIAVLSQIVLAEHPGTSIVTNSPTTEHLKVFIESLGGKQIRYISGYRNVINRA
                     ILANQEGVDCQLAIETSGHAAFKENYFLDDGTYVAAKILMLLPKLQAEGKSLDDLIAQ
                     LKQPLETQEVRFKLEAAGYRALGEQVIADFRNTSLEGFAFNPENEEGVRFDLTELYGD
                     GWLLLRMSLHEPLLVLQVENDQTGHIPAVLRTLSAFLDQYPAVNQEKLKALI"
     gene            complement(9649..10719)
                     /gene="xerS"
                     /locus_tag="U1087_000476"
     CDS             complement(9649..10719)
                     /gene="xerS"
                     /locus_tag="U1087_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012658412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerS"
                     /protein_id="HEM4754989.1"
                     /translation="MRRELLLEKIDQLKEIMPWFVLEYYQSKLAVPYSFTTLYEYLKE
                     YRRFFEWLQDSDLVSVERIADIPLDILEHLTKKDMEAFILYLRERPLLNANTTQNGVS
                     QTTINRTLSALSSLFKYLTEEVENEQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
                     LFLGDETMEFLDYVDKEYQVNLSKRALSSFQKNKERDLAILALLLASGVRLSEAVNLD
                     LRDVNLNMMIIEVTRKGGKRDSVNVAGFAKPYLEAYMSIRQQRYKAEKTDTAFFLSEY
                     RGLPNRIDASSIEKMVAKYSADFKIRVTPHKLRHTLATRLYDATKSQVLVSHQLGHAN
                     TQVTDLYTHIVNDEQKNALDQL"
     gene            complement(10885..11406)
                     /locus_tag="U1087_000477"
     CDS             complement(10885..11406)
                     /locus_tag="U1087_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM4754990.1"
                     /translation="MIIWLNGPFGIGKTTLANILHKRIENSYLYDPELLGDFLQHQLP
                     KTVCPEDFQDYSVWRRSTYKIVFDLATKTDKIIIIPMTIYKKEYYQEITQQLIQDKIP
                     LEHYILLADKTTILERLDNRVNEDNIWAKRHLDVCLKAFESHIPGQRLNTDSLKPEEV
                     AEEILMLSEFTKK"
     gene            complement(11472..12212)
                     /locus_tag="U1087_000478"
     CDS             complement(11472..12212)
                     /locus_tag="U1087_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3307 domain-containing protein"
                     /protein_id="HEM4754991.1"
                     /translation="MSFSVISSYLIQHPVLTALLIAHFLSDFTFQSQALADDKKLHLK
                     ALFMHLFIVSLPLLILALLTPVQNGDLFFQVWLSHLAIDYVKYFLNKHHWIKDSWEAG
                     AFLADQLLHVISIIILYHTIGVNVASHSLWIEPNYLLLQILFILLISKPVNILFKLYF
                     SKYQVAEGEEEQTVTGAGALIGQLECLIMGIFLLLGQYTAIGLVFTAKSIARYDKISK
                     SQAFAEYYLIGSLFSIISVLVLYVLLIL"
     gene            complement(12216..12884)
                     /locus_tag="U1087_000479"
     CDS             complement(12216..12884)
                     /locus_tag="U1087_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SatD family protein"
                     /protein_id="HEM4754992.1"
                     /translation="MNYIAIIGDIVNSKQTSNRSSIQERLKQQLNRINHSFAQDFASP
                     FTITKGDEFQALCKPNPYIFLIIDQIQLAFRDEVEIRFGIGLGEILTAIDPKLSIGAD
                     GPAYWEARKAIDFIHDNHDYGTSKIAFSSEYKQIDRVINPLLTSSDFIKAAWNRSQTD
                     LFETLISKKIYQEDFTQKPIAEKMKLSQSAFTKRLKSSGIKLYLRNRQTAMNLILQLS
                     QKEG"
     gene            complement(13078..14652)
                     /gene="ffh"
                     /locus_tag="U1087_000480"
     CDS             complement(13078..14652)
                     /gene="ffh"
                     /locus_tag="U1087_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000863601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HEM4754993.1"
                     /translation="MAFESLTERLQNVFKNLRRKGKISESDIQEATKEIRLALLEADV
                     ALPVVKDFIKKVRERAIGHEVIETLNPAQQIIKIVDEELTAVLGSETSEIIKSPKIPT
                     IIMMAGLQGAGKTTFTGKLANKLKQEENARPLLIAADIYRPAAIDQLKTLGQQIDVPV
                     FELGNQVPALEIVRQGLEQAKANHNDYVLIDTAGRLQIDQALMAELREIKEFAQPNEI
                     LLVVDAMIGQEAANVAREFNDQLAITGVILTKIDGDTRGGAALSVRHITGQPIKFTGT
                     GEKITDIETFHPDRMSSRILGMGDMLTLIEKASKEYDEKKSLELAEKMRENTFDFNDF
                     IDQLDQVQNMGPMEDLLKMIPGMAGNPALANLKVDEREIARKRAIVSSMTPAERENPD
                     LLTPSRRRRIANGSGNSFVEVNKFIKDFNQAKTMMQGVMSGDMNKMMKQMGINPNNLP
                     KNMPNMNGMDMSALEDMMGGAGMPDMSQLMGGAGMPDMSQMFGGGLKGRIGEFAMKQA
                     MKRQANKIKKAKKKRK"
     gene            complement(14665..14997)
                     /locus_tag="U1087_000481"
     CDS             complement(14665..14997)
                     /locus_tag="U1087_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding protein"
                     /protein_id="HEM4754994.1"
                     /translation="MEIEKTNRMNALFEFYAALLTDKQMNYIELYYADDYSLAEIAEE
                     FQVSRQAVYDNIKRTEKLLEDYEMKLHMYSDYVVRSQIFDEMLNKYPEDAYLKEKIAI
                     LTSIDNRE"
     gene            complement(15100..15798)
                     /locus_tag="U1087_000482"
     CDS             complement(15100..15798)
                     /locus_tag="U1087_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003076949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM4754995.1"
                     /translation="MKAAYITIHDKIKEQIDNGIWKIGQRLPSERDLADEFGVSRMTL
                     RQGITLLVEEGILQRKIGSGTYVASTRVQEKMRGTTSFTELVQLQGKTPSSKLLSYTR
                     TKPNEKEVEQLGLSRGEYVIRMERVRYADNVPVVYEVASIPERLIKNVPKEDVTNHFF
                     KTLMDNGYRIGTSKQTIFARLANEKVAQYLQISKNQAILALKQVSYLEDGQAFEFVNS
                     QYVGERFEFYLENN"
     gene            16074..17624
                     /gene="guaA"
                     /locus_tag="U1087_000483"
     CDS             16074..17624
                     /gene="guaA"
                     /locus_tag="U1087_000483"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009880616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HEM4754996.1"
                     /translation="MTKQDVQKIIVLDYGSQYNQLISRRIREFGVFSELKNHKITAEE
                     VRAINPIGIVLSGGPNSVYAENAFDIDPEIFELGIPILGICYGMQLITHKLGGKVVPA
                     GEAGNREYGQSNLQLKTESALFAGTPEEQLVLMSHGDAVTEIPADFHLVGLSADCPYA
                     AIENTERRIYAIQFHPEVRHSVYGNDILKNFAFGICGAKGDWTMENFIETEIEKIRQT
                     VEDKKVLLGLSGGVDSSVVGVLLQRAIGDQLTCIFVDHGLLRKNEGDQVMEMLGGKFG
                     LNIIRVDAAKRFLDLLAGVSDPEKKRKIIGNEFVYVFDDEASKLTDVEFLAQGTLYTD
                     IIESGTDTAETIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALGTALGMPDEVVWRQ
                     PFPGPGLAIRVMGEITEEKLQTVRESDAILREEIAKAGLARDVWQYFTVNTGVRSVGV
                     MGDGRTYDYTIAIRAITSVDGMTADFAKLPWDVLQKISVRIVNEVDHVNRIVYDITSK
                     PPATVEWE"
     gene            complement(17824..18873)
                     /gene="mcrC"
                     /locus_tag="U1087_000484"
     CDS             complement(17824..18873)
                     /gene="mcrC"
                     /locus_tag="U1087_000484"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methylcytosine-specific restriction
                     endonuclease system specificity protein McrC"
                     /protein_id="HEM4754997.1"
                     /translation="MIPVQNIYYMLSYAFKILHKQEYKRIATEEFKNIADLLAEIMII
                     SLSIQVKRGLGREYRSQTESLSALKGKINISDSLTPPNWRRKQLVCQYDDFSLDSTMN
                     RIIKASIEILLKADISRDRKKKLRKLLVFFGEVSKINLHSINWNLQYNRNNQSYQLLM
                     SICYLVVNGLIHTEREGNKKLMNFLDERRESLLYEKFILGYYKKHYPQIQVTASQIPW
                     ALDDGFGEMLPIMQSDIYLKYKDTILIIDAKYYSSNTQIRFDKRTLHSNNLYQIFTYV
                     KNQAYRLSDSNDTVAGMLLYAKTDIDIQPNQVYQMHGNQISVKNLDLNLQFASIAEQL
                     DNIITSHFVSPPKRY"
     gene            complement(18870..20555)
                     /locus_tag="U1087_000485"
     CDS             complement(18870..20555)
                     /locus_tag="U1087_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM4754998.1"
                     /translation="MDEQNQFNWVNFYKEFAWKLVDYKDNRAELVEKVKAIYTKTKIH
                     MPTLEKDNQLMDIDPFTIFGLFNKRITEENRIKILTAIAELFHLQAEIPSSFESIPVL
                     NNQNATFYYFIGDRDENDIDDLWELFIAALTYSKEPTAEKKEKFSHYFDLAINKKGNG
                     NSKITMALYWIAPDFFLNLDSQNETYVYESGEIPADIVQKLPKMKSKISADEYFDISD
                     SILQYLKSAESKLKNFKELSSMAWKYNQEEKKRSAGAISPLAEEADTGNEIGSEDVVE
                     DSYTKNHFLSEVYMTEEEYDQLTSILQMKKNIILQGAPGVGKTFVAERLAFSLMGKPD
                     LERVMTIQFHQSYSYEDFIMGFRPSTSGFELRRGAFYTFCKKAESDKNHDYFFIIDEI
                     NRGNLSKIFGELFMLIENDKRGKSLQLLYSDVQFSIPENLYIIGMMNTADRSLALLDY
                     ALRRRFAFFDIKPGFSTAGFKDYQTNLKNEKFDRLISCVEKLNQAISTEEVLGDSFCI
                     GHSYFCGLSAEVLDQGLLEAIVEYELIPLLKEYWFDEPTKIHDWSSKLRSAIQ"
BASE COUNT         6017 a         4081 c         4256 g         6499 t
ORIGIN      
        1 caaagagaat cgaagaaaag gtattctcag aaaaagaaaa gtctgaactc ttggaacaag
       61 ccgtattctt agaagagctc gcccatgatt tgcaaagtat aagatttatg gcatactaga
      121 gggaggaaac tatgaaaaag aaagtatttg gcttgctggc tttgggcagt ataatgctaa
      181 ccgcttgttc tacctcttca gcaggcctta gctttgaaga gggttatcaa attttccatt
      241 acaagggaaa agactatgcc gttagcaaac aggaagttgc cgaagatagt attcaaggaa
      301 cagaagttaa gtttatggaa tggcctgttg tcaaagaaga gggttcagtg aaaaagacag
      361 tatccttaaa taatctctat gtaaccacta acaaggaatg ggccatcggt gtccaggatg
      421 gttactataa ggtagattta gaagaaaatg ttgctgaatc agaccgaatc gactatcaaa
      481 gtgtacttga gaatgttgat tttacttaag aaatcaatta ggagtttata tgttattaga
      541 aatcaatcat ttaaaaaaag tttacaaaga cgttaccact gttgatattg aaaagattac
      601 tgtacgagaa ggagaaatct acggctttct tggaccaaat ggtgcaggta agacaactac
      661 gatgaaaatg attctatcac ttgtcactcc gacttcaggt gaaattttta ttaataaaaa
      721 agacattcga aatgacaaaa aatacctaaa tcagattgga tctatgatag aagaaccgtc
      781 ctattatcct aatttaactg gatatgaaaa tttattagtg tttcaaaaaa tggtgggatt
      841 tgataaaaat aatatccggc caacattgga gctcgttgga ttagctgatg aaaaaaatcg
      901 aaaaaaatta gttaaggcct attctcttgg tatgaaacag cgacttgcct tagcatttgc
      961 tttagtgaaa aagccgaaaa tcttattatt agatgagccc acaaatggtc ttgatccagc
     1021 tggtattcat gaaattcgtg aattaattgt tcaattagcc aaagaaaaag gtctgactgt
     1081 ctttatttcc agtcacattc ttccggaaat tgaacacatt gcagatcgag ttgggattat
     1141 caatcatggt cgtcttgtct atgagggaga aattgaagct attaagtcaa atacttggat
     1201 tgaaattggc ggtgattttt cacagaaaaa tattgttcag accttagttg aacttggaac
     1261 ggtagaaatt ttgagtgcat ccgaaagtca agtaacttta agggatttgg ataacgatcg
     1321 gttagcagat ctggtgagct atttaataga aaatggatac cgaatattcc gagtggttag
     1381 agaaagtgaa actcttgaag atattttcct aaatctaaca aaggaggcgt aagatgaatg
     1441 gtgtttacat tgaatggcta aaaagtagac gaacaaaatc tatttcaatt gtcattattt
     1501 tgatgttggt tgccacactt tggaatattg caacttttat ctctgctttc tcttcacatc
     1561 cagagttaag aatggctgga accttgttta gtaatcagaa tgtcgatcta cttatgttcc
     1621 cgattgcagt ttgtgtgttt gctagtcgaa ttgtagggaa tgaacatgaa gggcagacct
     1681 ttaaactaca aatagctaat ggtcaaagcc taacagccat ttttcgtgat aaattctttt
     1741 ttatgctggt ttcctttgtt attatgtctg ctatcgaaat tatgattatt tatcttttcg
     1801 gaacacaggc aggaatctct atttctttgc agattattgg tattcagttt attgggcaga
     1861 tacttgcaat attttcattg atttgtcttt atctgacctt ggccatgatt cttgaaaagc
     1921 aggggattct gctagcacta ggacttttag gtggttttct aggaattatc ttaaacccaa
     1981 aaagttatgg ttttaccagt ttacttaacc caatcactgg ttcaggaagt cttgcgcctt
     2041 ataaatatca atttctgggt gacggcacaa ttacctataa tttagatagt cagttgcttg
     2101 agaaaatcgt ctgttatgcc atttactgct tgatactcta ccttttggcg gttctaatat
     2161 taagaaagaa agggaactaa gatgaaagat tacttcttag ctgagtggac aaaaacaagg
     2221 aaaattcaat tattagtcat tgggattgcc tttttgagtt tctctagtat gataggattg
     2281 ggtatctatt ttgctaatcg tgatgtttta atcgacggaa ctcaatcttt ggttctgtgg
     2341 ggacaactga ccttttacaa tagtacctta ctttatcctc ctatgttagc cattattgca
     2401 ggtctcttat tagttcctga atttgagcga aaaactcttg acatgctaaa ggctaatcaa
     2461 gtttctatga ggaaattata tttaggaaaa ttaatgagca gttttcttct tattcttcca
     2521 attcaactct tattgctgct gatttttata gttgcggcaa aaattgacgg catttcattt
     2581 gaccttagtt tagccacaca tgttaaatgg attgctttat cgcttttgtc ttcctttcca
     2641 attattacac tccaatccta tatcactgta aaaactcgaa atttcagtaa gggagtcggt
     2701 gttgctacca ttggtagtat gcttaatttt gtattaattt ttatcaatga aagttttacg
     2761 aaatttttcc cttactctca accgatgatt ggattacgga gtagggcatt gcaagatatg
     2821 acatttttag agtttatctt atttattaca gtgaatattg tgtttagttt tattttttat
     2881 cagttaacta tcaagaattt ggaaaatagt aaataaaaac cttttacaat ttcatgtatt
     2941 tcttttataa agctgataat tagaaactca atttcatggg atttagtacc aaagaaaatt
     3001 agctatacta aatcaagtta attttgctaa agaaaacaat taggagtaac tatgttatta
     3061 gaaatcaatc atttagaaaa agtttaccgc acgcgctttt caaaagagga aactcgtgcc
     3121 ttgcaagatg tggattttaa ggtagaagag ggcgagttta tcgctatcat gggggaaagt
     3181 ggttctggta agacgacttt gctcaacatt ctagcaaccc tggacaagcc gacgaggggc
     3241 tctgttatct taaacaatca agacatcacc aaaatcaagg aaagcaagct ggcagatttc
     3301 cgtttgcgta atcttggctt tgtcttccaa gattttaacc tcttggacac cctgtccatc
     3361 caagacaata tctttttacc tctggtattg gcacgtgaga gctatcagga aatggagaaa
     3421 cggttggaag tattggcacc aaaactacgg attcaagatt tgctgaaaaa acgtcccttt
     3481 gaactttctg gtggacaaaa gcagcgcgtg gctattgctc gtagtttgat tacccagcca
     3541 cagattgtcc tagcggacga accgacggct gccctagatt atcgcaattc ggaagacttg
     3601 ctgaatttgt ttgaagagat taaccgtgac gggcaaacta ttctcatggt gacccactcg
     3661 gccaacgcag ccagccacgc caaacgtgtc ttgtttatca aagatggtcg tattttccat
     3721 caactgtaca aggcagacaa gagcaatcaa gactttgcca aggagatttc actcaatatg
     3781 tctgcacttt tagggggtga gtagatgttt tacctcaaac ttgctgggca aaatatccga
     3841 aaatccatgg gtgtttttgc tcccttcgtt ttagccagtc tggtcctctt taccctgatt
     3901 tgttccatgt tcttgatcat gctgagtcca gttatgaaga ccatgggctc tggtgccatt
     3961 tctatcggtc ttggtgtgat tattctgacc attttctcgg tcattatgga gatttatagt
     4021 tttaatttcc tgatgaaaca acgggcgaga gaatttggtc tctataacat gctggggatg
     4081 aacaagaaaa aagtagcctt gatagctagc ctcgaattga tgatgatttt cttgctagtt
     4141 gtggttcttg gttctgtttt agctggtgtg tttgcaaatg ttctctactt gatttttgtc
     4201 aatataacac attatagtga tttacatttt ggaattgagc ctctggcctt tgtcatgact
     4261 gcctttctct ttgctggttt cttctttctc ttggaattgc tagccattcg gaccattggc
     4321 aagaccagtc cgctgatttt gttccgagct agtgaaaaag gagagagaga gccgaaagga
     4381 aatgttcttc tagctgctct tggtgttttt agtcttggga tgggctacta cctatcgctt
     4441 tcatcgaaag cagaaggtct agctgttatc tatcggttct ttatcgctgt gctctttgtc
     4501 attgcgggga cctatctgtt ctacatcagt tttatgactt ggtatttgaa ggctcgtcgg
     4561 aaaaacaagc ggtatttcta tacgccagag catttcatta cgacatcgca gatgattttt
     4621 cggatgaagc agcacgcaac gggtttggcc aatattacgc tacttgcggt catggccttt
     4681 gttaccattg cgaccacaac ctccctttat acaggtatga gcagtatgac aggtgtacta
     4741 tatcccaagg aaacatctat tacctataaa gtttcgtata gaagtcaagg tgtagctgcc
     4801 tatcagcaat cggtgctcag ccattttcca gaaaaagcca atgacaatct atcctatctg
     4861 acctaccaag caggtttggt ctatgatggt gggagcgata ttgtcatcaa tccagaaacc
     4921 attgccaatc cagactttag caaaatggcc tttacctact tcatcaccca agatgatttc
     4981 aggaaattgg ggaatgacct gccagagctg gctgccaatc aagttgcctt tatgcgtccg
     5041 agtgaaatgc cgtcgcttaa gaagcttgtt ttgggcgatc aaacctttga gaatgtagcc
     5101 aatcttgacc aggctatttt cccagacatc accaatacgc taaatgccgc cgttatggta
     5161 gtcagtgatg acactgtgtt ggatgctgtt cgtgagtatt acgagtccaa taatccgcaa
     5221 gggtatacag tcagtctgga ctaccgtgtc tttaccgact tgactgatga agaggttgct
     5281 tcgattggtc aacaaactgg cgactcttat aatatcaacg atgcaaacgg agaattccta
     5341 ggatatgcta tgcaaaaatc agattttaac aatttactga tgggctttac aggcagtttc
     5401 ctctttacag gtttcttgct gggcattagt ttcctacttg gtgcagcctt gattatctac
     5461 tacaaacagt actcggaagg acatgaggac aagaaatcct acaagatttt gcaggaagtg
     5521 ggtatgagcc agcaggctgt taagaaaacc atcaactctc aaacactctt ggtcttcttt
     5581 atgccactgg ctatggcgac cctgcacttt atcgtcgcac tagtcatgct caagcaaatg
     5641 ttgatggtgt tcggtgtagt ttcttccagc atgatttata cggttagtgg tattactttg
     5701 cttgctgttg tcctcatcta ctttgtcatt tacaagtgga ccagccgaac ctattatcgt
     5761 attattgaac gatagcagaa gtctcgcctt gtgcgagatt tcttgctttt tcagggaaat
     5821 ggtgttacaa tggtaatacc aaaggaatac tcaaagaggt aagaaaatgg cagctattac
     5881 attgaaagtt tctgagcagg acaagctctt tatgcaggct atggcaaagt ttgaaggtgt
     5941 cagtttgtca gaactcattc ggactaaaac ccttgaagcc cttgaagacg agtacgatgc
     6001 gcgtgtggca gacgttgctt gggcagaata ccaagcagac ttggcgaata gaattgagcc
     6061 gatgacatta gaacaaatgg ctgaggagtt gggcattgag ttataaggtt attttgtctg
     6121 ctaaggccca aaagcaaatt cgaaagatgg ataaaaccgc tgcaagtttg attttgcgct
     6181 atctctacaa gcatattgac ggttgcgaca accctagaca atacggaaaa gccttgactg
     6241 ctaatcgttc tggccaatgg cgctatcgta tcggcaatta cagggttatc gttaatattg
     6301 aagatgataa attgattgtg acaagcataa aaatgagaaa tggaagtata taagccaaga
     6361 cctgtgtcct ggcttttgca gaatgaagaa gatgaaaaaa gagaagattt atattgttga
     6421 agatgatgag atgattgtcc agctcttgaa gcagcatttg ggaaaatcgt atcaggtgga
     6481 aagtgtgcag aatttccgag ctgtcagtca ggaagtcgct gaaatcaaac cagacttggt
     6541 gctgatggac attagcctgc cttattacaa cggtttttac tggacgacag aaatccgtaa
     6601 aaccatgacc atgcccatta tctttatctc ctctagcgat gatgagatga atgcggtcat
     6661 ggccatgaac atgggtggcg atgtttttgt gtctaagccg ttttctctgg ggattttgga
     6721 tgccaaaatc ggcgccttct tgcgtcgggt taatcaattc agcaaatcaa ctgatttgtc
     6781 aattgaccag ttccaactta gtttagacgg gcgattttca aacgaattgg aacaggttca
     6841 attgtctcct acggaaacca agattttgtc cgccttacta gaaagacaag ggcagattgt
     6901 cagcaaggaa gaactcctgg aaaaactctg ggaaaatgaa gaatttattg accagaacac
     6961 gctcaatgtc aacatgacca gactgcgtaa gaaggtgagc gaagtcgggt ttgaacgaat
     7021 tcatacggtt cgtggcgtgg ggtacttggt caaatgatag caaaatttat ccgtgaatac
     7081 cggagttttt acttctccta cattgttctg gctactagtt ttatcttgct tttctttctc
     7141 tatcaactgc ccaccgaatt cctgcaaaac gctctgctat tgtccctaac ccttttaatc
     7201 ctactgactg tagggctttt ctggaagttt cgcaaccgca tgagagcctt ggaagactat
     7261 gttcatgagg aagccttgcc cttgctcaat aagcctgtgg accttgccta tctcaacttg
     7321 attgaagcgg agaaggaggc gacacgagag cagcttttgg tctataagtc acgagaagag
     7381 gacctgcaag ccatggtcaa aatgtggtcc caccagatga aagtgcctct ggctgccctg
     7441 tctttgatga gccagactga caatctcaac cagcaggatg tcaatcacca gctcttacgc
     7501 ttggacaatt atatggcaaa tctcctcaac tacctcaagc tgaccaacca tgccagcgat
     7561 tttcgatttg agcaggtgga agtaagagaa gtggtggtgg atttggtcaa aaaataccgc
     7621 aatcagttct tacaaaaaga catttcagtg accatcgatg gaaattggct actgaagtcc
     7681 gacagaaaat ggctcagctt tgccttgtca cagataatcg acaacgccct caagtacaat
     7741 aagactggtg gaaaggtagc cattgaactg aatgagggaa tttccatttc cgatacggga
     7801 attgggattc tggcagaaga tattccacgc ctgtttgacg agggatttac aggttttaat
     7861 ggccgagaac accaaaaagc gacaggattt ggattgtatc tgaccaagcg ggtcctgaat
     7921 cagttggaac tagctatttc cgtggaaagt caactggaag ttgggaccag cgtaaccatc
     7981 acaaaagtac agtagaagct gtgctttttt cattttgaaa ccgctttgaa aatatgatat
     8041 actaaattta gtttgaatta ggaggttact atgtcccatc atcacgtctt gcaaaatgga
     8101 tcagatattc gtggaattgc tatcgctaca gacgaatatg ctgtcaatct cactccgcaa
     8161 gccacccagg aagtagttcg cggacttatt cattggctaa ctcagaagcc ggaactggcg
     8221 cagacctatc aaaaaggcca attgaccatc ggtatcggtc gagacagccg cctcagcggt
     8281 ccagatttgg tcgcagcctt tacagaagaa gccgttcgtc tgggcgttca gctgattgac
     8341 tttggtatgg ctaccacgcc agctctcttc atgagcaccc agtatcctca gttcaagtgc
     8401 catgctggtg tcatgatcac tgccagccat ctgccgcatt acttcaacgg cattaagatt
     8461 ttttcggaaa atggtggagc agaacatgaa gatattgact tcatcctctc cagtagtgaa
     8521 gacttgccgg cttctgacct tggaagtgtg accaaagcag atttgattac gccttatgcc
     8581 caagacttag ttggcaaaat tcgtaccgcc tgtggtggac aagaaaaacc actgacaggt
     8641 cttaatatca tcgtcgatgc tggaaacggt gcaggcggat tttttgctga gaaagttttg
     8701 gcagaattgg gagcagatac cactggttca caattcctag acccagacgg caccttccca
     8761 aaccatgttc caaacccaga taacaaggaa gctatggaaa gcattcgtca ggctgtcttg
     8821 aagcaaggtg cagacctagg cattatcttt gataccgacg ttgaccgtgc cgccctggtt
     8881 accaagtcag gagaaattct caatcgtaac aacctgattg ccgttctcag ccagattgtc
     8941 ctagctgaac atccaggaac cagcattgtg accaattccc caacgactga acaccttaag
     9001 gtctttatag aaagcctggg aggcaaacaa attcgctata tttcaggcta ccgtaatgtc
     9061 atcaaccgtg ctattttagc caatcaagag ggagttgatt gccagttggc tatcgaaaca
     9121 tctggacatg ctgcctttaa ggaaaattac ttcctcgatg acgggaccta tgtagcggct
     9181 aagatcctta tgctcttacc aaaactgcaa gcggaaggca agtccttgga cgacttgatt
     9241 gcccagctca agcaaccact tgaaacccaa gaagtacggt tcaaactaga agcggcaggc
     9301 tatcgagcac ttggtgaaca ggttattgct gatttcagaa acaccagcct cgaaggcttt
     9361 gcttttaacc cagaaaacga agaaggagtg cggtttgacc tgactgagct ttatggtgac
     9421 ggctggctct tgctccgtat gagtctccac gagccactct tggtcttgca ggtggagaat
     9481 gaccagactg gacacatacc tgccgtttta cgaactctct cagccttttt ggaccagtac
     9541 ccagctgtca atcaggaaaa attgaaagca ttgatttaga tttaagagaa aaaggggtaa
     9601 gttttcgctt actccttaat ttatttacat aattaatatt acgtaacact ataattgatc
     9661 cagtgcattt ttttgctcat cattgactat atgggtgtag aggtcagtga cctgagtatt
     9721 ggcgtggccc agctgatgac tgaccagaac ttgcgacttt gtggcgtcgt ataggcgagt
     9781 tgccaaggta tgacggagtt tgtggggggt tacgcgtatc ttgaagtccg cagagtactt
     9841 ggcaaccatt ttttcaatag aagaagcatc gatacgattg ggtagaccac ggtattcgga
     9901 caggaagaag gccgtatccg ttttttcagc cttgtagcgt tgctgacgga tgctcatata
     9961 ggcttccaga tagggcttag caaacccagc cacattgacc gagtcccgct taccaccctt
    10021 acgggttact tcgataatca tcatattgag atttacatct cgaagatcca aattcaccgc
    10081 ttctgacaga cggacgccag aagccaagag aagtgccaga atcgccaaat ctcgctcctt
    10141 atttttctgg aaagaggaga gggcacgttt agagagattg acttggtatt ccttgtccac
    10201 atagtccaag aactccatgg tttcatcgcc caaaaagagc ttttgcttga tgttctcagc
    10261 ccgcgctgcc aaggtttcct tcttcttctt ggtagatacc tttttcatga cattgcggta
    10321 gaagtagggc tcgccctgct cattttccac ttcttcggtt aaatacttga agagactaga
    10381 aagagccgac agggtacggt taatggtggt ctgcgacaca ccattctgcg tggtattggc
    10441 gttcagcaag ggacgctccc gcagataaag aataaaggct tccatatctt tttttgtcaa
    10501 atgttccaga atatccaaag gaatgtcagc aatccgttcc acagatacca aatccgaatc
    10561 ctgtaaccac tcaaagaatc gacggtattc tttcaagtat tcatataagg tagtaaaact
    10621 gtaaggcaca gccaattttg actgataata ttccagaaca aaccaaggca taatttcttt
    10681 tagttgatca attttttcta gtaataactc gcgtctcatc attttctcct gattttagct
    10741 atatgagtag tatagcataa tcttacataa gtttcaagaa aattatagtt tttcggaaag
    10801 atgtttgtgg ggatatcaga gggataacca aaaaacataa ataactggaa atttttttca
    10861 cacccaaaat cccaaaagtc tacattattt cttggtaaac tcacttagca ttagaatttc
    10921 ctccgcaacc tcttctggct tcaaactgtc tgtgtttaac ctttgccccg gaatatgact
    10981 ttcaaaagct tttaaacaaa catcaagatg tctcttggcc cagatgttgt cttcattgac
    11041 tcgattatct aaacgttcca aaatggttgt tttgtcagct aacaaaatat aatgttccaa
    11101 aggaatctta tcctgtatca attgctgagt aatctcctga taatattctt tcttatagat
    11161 tgtcatggga ataataataa tcttatcagt tttagtcgct aaatcaaata ctattttata
    11221 agtactccgt cgccaaacgg aataatcttg aaaatcttca ggacatacag tcttaggtaa
    11281 ttgatgttgt aagaaatcac ctagtaactc gggatcatag agatatgagt tttctattcg
    11341 tttgtgtaat atatttgcta aagtagtctt tccgataccg aatgggccat ttaaccaaat
    11401 aatcatatag tattcctttc tatttttata ataaaagttt acacaaaata aattatgtaa
    11461 acttttttct tttataaaat cagtaaaacg tacaatacta ggacactaat gatactaaat
    11521 agcgaaccaa ttaaatagta ttcagcaaag gcttggcttt tggatatttt atcatagcgt
    11581 gcgatggatt ttgctgtaaa taccagcccg atagctgtgt attgccctag aagtagaaaa
    11641 atccccataa tcaagcattc taattggcca atcaaggctc ctgcacctgt cacagtctgc
    11701 tcttcttctc cttccgctac ctgatatttg ctaaagtaga gtttgaaaag aatattgacg
    11761 ggcttgctga tcagaaggat aaaaaggatt tgcaggagga gataatttgg ttcaatccag
    11821 agtgagtgtg aagcaacatt gacaccgata gtgtgataaa gaatgatgat agagatgaca
    11881 tgtagcaatt gatcagctag gaatgctcca gcttcccagg agtcctttat ccaatggtgt
    11941 ttgttgagaa aatatttgac atagtcaatc gcaagatggc tcagccaaac ttgaaaaaat
    12001 aaatctccgt tttgaacggg ggtaagtaag gctagaataa gaagagggag agaaacaatg
    12061 aaaaggtgca tgaaaagagc tttcaaatgc agttttttat catccgccag tgcttgactt
    12121 tggaaggtaa aatcacttaa aaagtgggca ataagcaagg ctgttaaaac tggatgttga
    12181 ataagatagc tagaaataac tgaaaatgac atgctttatc cttctttctg actgagctgg
    12241 agaatcaaat tcatggcagt ttgacgatta cgcaggtaga gtttgattcc gctggatttc
    12301 aaacgtttgg taaaggcgct ttgactgagt ttcattttct cagcaattgg cttttgtgtg
    12361 aaatcttctt gatagatttt tttggagatt aaggtctcaa acagatccgt ttgcgaacga
    12421 ttccaggcag ctttgatgaa atcgctagaa gttagcaagg ggttaatcac acgatcgatt
    12481 tgcttgtatt cagatgaaaa tgcaattttg ctggtgccat agtcatggtt gtcatgaatg
    12541 aagtcaatag ccttgcgtgc ttcccaataa gctggaccat ctgctccaat acttagcttg
    12601 ggatcgatag ctgttagaat ctcacccaaa ccaattccaa atcgaatctc cacctcatca
    12661 cggaaggcta gttggatttg gtcaattatt aaaaaaatat aagggttagg cttgcataag
    12721 gcttgaaatt catctccctt tgtaatggta aatggtgatg cgaagtcctg agcgaaggaa
    12781 tgattgattc tattcagctg ctgttttagc cgctcttgaa tactagagcg gttggaagtt
    12841 tgttttgaat tgacaatatc tcctattatt gcgatataat tcataacttg tcctctgatt
    12901 cctattatat ttccattata acggacaata taaagattgt ccactaaaaa ggacattttt
    12961 gaatatttcc gttataacgg aaaatgttgg ggttcaaaaa tcatttttcc tgctttgcta
    13021 cttctatttt acattgctgt atcttacttc ttcgaataaa aagtaaaaaa gaagagatta
    13081 ttttctcttc tttttggctt tcttgatttt attggcttgg cgtttcatgg cttgtttcat
    13141 agcaaactcg ccgattctac ctttcaaacc gcctccaaac atttgggaca tatctggcat
    13201 accagctcct cccatcagtt ggctcatatc aggcatgcct gcaccaccca tcatatcttc
    13261 cagagcagac atatccatac cgttcatgtt tggcatgttt ttagggagat tatttgggtt
    13321 gattcccatt tgtttcatca ttttgttcat gtcgcctgac atgacaccct gcatcatggt
    13381 tttcgcttgg ttgaaatcct tgataaattt attgacttcg acaaagctat ttccagaacc
    13441 gttagcaata cgacgacgac ggctcggtgt caacaaatca ggattttctc gttcggctgg
    13501 tgtcatagaa gatacgatag ctcgttttct tgcaatttca cgctcgtcaa ctttcaagtt
    13561 ggcaagtgct gggttaccag ccataccagg aatcatcttc agcaggtctt ccattggtcc
    13621 catattttga acttggtcca gctgatcaat gaaatcgttg aaatcaaagg tattctcacg
    13681 cattttttca gcgagttcta gtgatttctt ctcatcgtat tctttgctgg ctttttcaat
    13741 caaggtcagc atgtcaccca tgcccaaaat acgcgaggac atacggtctg ggtggaaggt
    13801 ttcaatatct gtgatttttt caccagtacc ggtgaatttg attggctgac cagtaatgtg
    13861 acggacagac aaggctgcac caccacgtgt atcaccgtca atcttggtca aaatcacacc
    13921 agtaatagcc agttgatcat tgaactcacg cgcaacgttg gcagcttcct gaccaatcat
    13981 ggcatcgacg accaagagga tttcgtttgg ctgagcaaac tctttgattt ctctcaattc
    14041 ggccataagg gcttggtcaa tctgcaaacg accggccgta tcaatcagaa cgtagtcatt
    14101 atgattagct ttggcttgtt ctaaaccttg gcgtacaatc tccagggcag ggacttgatt
    14161 gcccaactcg aatacaggta catcaatttg ttgaccaagg gtcttcaact ggtcaatggc
    14221 agctggacga taaatatcgg cagcaatcaa gagtggacgg gcattttctt cctgcttgag
    14281 tttattagct aacttacctg tgaaggtcgt tttaccagcc ccctgcaatc cagccatcat
    14341 aatgatagtt ggaatttttg gtgatttgat aatttctgaa gtttcagaac ctaatacagc
    14401 cgtcaattct tcatcaacga ttttgatgat ttgttgagcg gggttcaggg tttcaatgac
    14461 ttcgtgacca atggcacgtt cacgtacttt tttgatgaaa tcttttacaa ctggaagagc
    14521 aacgtcggct tctagtaagg ccagacgaat ttccttggtt gcttcctgaa tatcactctc
    14581 agaaattttt cccttacgac gcagattttt aaaaacattc tgtaaacgtt ccgttaagct
    14641 ttcaaaagcc atatacttct cctcttactc tctattatca atactggtta gaatggcgat
    14701 tttctccttc aaataagcat cttctggata cttattcagc atttcatcga aaatctgact
    14761 acgcaccaca tagtcagaat acatatgcag tttcatctca taatcttcca gtaatttttc
    14821 tgttcgttta atgttatcat agaccgcctg acggctgact tgaaattctt cagcaatctc
    14881 agccaaacta taatcatcgg cataatagag ctcgatgtag ttcatttgct tgtctgttag
    14941 caaggctgca tagaattcaa ataaggcatt cattcggttg gttttttcaa tttccataaa
    15001 ctttattata tcaaaaattc catattttat aaataagaaa atccgtcatc actagaaaga
    15061 ttacggattt taaaaatgtt ttacataatt atttttatgt taattgtttt ctaaatagaa
    15121 ttcgaaacgt tccccaacat actgactatt tacaaattca aatgcttgac catcctcgag
    15181 ataagatacc tgttttagtg cgagaatagc ctggttttta gaaatttgta aatattgagc
    15241 cactttttcg ttggctaaac gcgcaaaaat ggtttgtttg ctcgttccaa ttcgataacc
    15301 attgtccata agtgttttaa agaaatggtt ggtaacatct tcttttggga cattttttat
    15361 caagcgttca ggaatgctgg caacctcata cacgacggga acattatctg catagcggac
    15421 ccgctccatt cgaataacat actcgccacg ggataaacct aattgttcaa cttctttttc
    15481 attaggtttg gttcgcgtat aggacaataa tttgctgctt ggcgtctttc cttggagttg
    15541 tactaattca gtaaaggaag tcgtgcctcg catcttttct tgaacccgtg tactggcgac
    15601 ataagtaccg gaaccaatct tgcgttgtag aataccttct tccactaaaa gtgtgattcc
    15661 ttgacggagc gtcatacgag aaacaccaaa ttcatctgct aaatcgcgtt cacttggtaa
    15721 acgttgacca attttccaga ttccgttatc gatttgttcc ttaattttat cgtgaattgt
    15781 gatatatgct gctttcattt atctagcctt tctcttcttt ctagtttacc aaaaataaag
    15841 gcgtttggct aattcaggcc acactctatt ggtaaaattc tcctaggcaa acaatgaagt
    15901 cagattacct aaaataaagt gagtaaaaac aataaaaata cgaacactaa catttttatt
    15961 atcactcata gtttgcaaaa cagatattta acaaataaaa tttggaaaat gttcgctttt
    16021 atgttaaaat aactactagt atttgaattt ttttcaaaac gaaagggaaa aacatgacaa
    16081 aacaagatgt ccaaaaaatt attgtattgg attatggtag ccagtacaac caacttattt
    16141 cacgtcgaat tcgtgaattt ggtgtctttt cagaattgaa aaaccataaa attacagctg
    16201 aggaagttcg tgctatcaat ccaattggta tcgttctttc aggtggacca aactctgtct
    16261 acgcagaaaa tgcctttgat attgatccag aaatctttga attgggtatt cctatcttag
    16321 ggatttgcta tggtatgcag ttaattaccc ataaattggg aggtaaggtt gttcctgctg
    16381 gtgaggctgg aaatcgtgaa tatggtcaat caaatcttca actgaagact gaatcagcgc
    16441 tttttgctgg aacaccagaa gaacagcttg tactcatgag ccacggggat gctgtaactg
    16501 aaattcctgc tgatttccac ctagttggtc tgtctgctga ctgcccttac gcggccattg
    16561 aaaacacgga acgccgtatc tacgctatcc agttccaccc agaagttcgt cattccgtat
    16621 atggaaacga tattttgaaa aactttgcgt ttggtatctg tggagccaaa ggtgactgga
    16681 caatggaaaa cttcatcgaa acagaaattg aaaaaatccg ccagactgtt gaggacaaga
    16741 aagtcttgct cggtttatca ggcggtgtgg attcatctgt tgttggtgtg cttcttcaac
    16801 gtgctattgg tgaccaattg acctgtatct tcgttgacca cggacttctt cgtaagaatg
    16861 aaggcgatca ggttatggaa atgttgggcg gtaaatttgg cctcaatatt attcgcgtcg
    16921 atgctgctaa gcgtttctta gacctacttg ctggcgtatc tgaccctgag aagaaacgta
    16981 aaatcatcgg taatgaattt gtttacgtat ttgacgatga agcgagcaag ttgactgatg
    17041 ttgaattcct agcgcaagga acactttata ccgatattat cgagtcagga acggatactg
    17101 ctgagacaat caaatctcac cacaacgttg gtggtctgcc agaagatatg cagttcaagt
    17161 tgattgaacc gctcaatact ctctttaagg atgaagttcg tgccctcggt actgctcttg
    17221 gtatgccgga tgaagttgta tggcgccaac cattcccagg accaggcctt gccattcgtg
    17281 tcatgggtga aatcactgag gaaaaacttc aaactgttcg tgaatctgac gctatcttgc
    17341 gtgaggaaat tgcaaaagcg ggtcttgccc gcgatgtgtg gcaatatttc acggttaaca
    17401 ctggcgttcg ctccgtaggt gtcatgggag atggtcgtac ctacgactac accatcgcca
    17461 tccgtgctat cacttctgtc gatggaatga cagctgactt tgccaaacta ccatgggatg
    17521 ttcttcaaaa aatttctgtc cgtatcgtaa acgaagtcga ccacgtcaac cgcatcgtct
    17581 atgatataac aagtaaacca ccagcaacag ttgagtggga gtgatagagc ctggggagag
    17641 gctctatcag ctagtctatc aagactgttt tacccgacgc ttaaaaataa aaaagcgtcg
    17701 ctgatctggg aaatcaatta accagacgct ccaaaatagg aaagagtctt ataaaaaaac
    17761 aatcaaagag tagtttagtg ctactacttg attgtttttt tgttttctag cttaaagctc
    17821 taactagtac cgttttggag gggatacaaa atgcgatgta atgatgttat ccagttgttc
    17881 agcaatactt gcaaactgca ggtttaagtc caaatttttg acactaatct ggtttccatg
    17941 catttggtag acctgattag gttgaatatc tatatcggtt ttagcgtata gaagcattcc
    18001 tgctactgta tcgtttgaat ctgacaggcg ataagcctgg tttttcacat aggtaaaaat
    18061 ttggtataga ttatttgaat ggagtgtgcg cttatcaaag cgaatctgtg tgttactaga
    18121 ataatattta gcatcaataa tcaatatagt atctttatat ttgaggtaaa tatcactctg
    18181 catgatgggg agcatttctc caaaaccatc atctagtgcc caaggtatct gagaggcggt
    18241 aacctgtatt tggggataat gctttttata atatccaaga atgaacttct catatagcaa
    18301 ggattccctt cgctcatcaa gaaaattcat caatttctta ttcccctccc tctctgtatg
    18361 aattaatcca ttcaccacca aatagcagat tgacattagt aattgatacg actgattgtt
    18421 tcgattatat tgtaaattcc aattgattga gtgcagatta attttcgaga cttctccaaa
    18481 gaaaactaag agttttctca atttcttttt cctgtccctg cttatatcag cttttagcag
    18541 tatctcaatg cttgctttga taatgcgatt cattgtactg tcaagagaaa aatcatcgta
    18601 ttggcaaaca agttgctttc tacgccaatt cggaggtgtt aaagagtcag agatatttat
    18661 tttaccttta agagccgaga gtgactcggt ttgagaacga tactctcgac caagtcctct
    18721 tttcacctgt atcgagaggc tgattatcat tatttccgcc agtagatctg caatattttt
    18781 aaattcttca gtagcaatcc gtttatattc ctgcttatga aggattttga atgcgtagga
    18841 tagcatatag tagatatttt ggacaggtat cactggatgg cactccttaa cttactactc
    18901 caatcatgaa tttttgtcgg ttcatcaaac caatattctt tcaagagagg aatcagttca
    18961 tattcaacaa tggcttctag caaaccttgg tccagtactt ctgccgataa accgcagaag
    19021 taactatgcc caatacagaa gctatctccc agtacttcct ctgttgaaat ggcctgattt
    19081 agcttttcta cacaggaaat gagtctatcg aatttttcgt ttttcagatt tgtttgataa
    19141 tctttgaatc ccgcagttga aaaacctggc ttgatgtcaa agaaggcaaa gcgtcgtctc
    19201 agtgcataat caagtagggc taaactccta tctgcggtat tcatcatgcc gatgatatat
    19261 agattttctg gaattgagaa ttgcacatcc gagtagagga gctgtaaaga cttgcctcgt
    19321 ttgtcatttt ctatcagcat aaacaattca ccaaaaattt tgctcaaatt tcccctgttt
    19381 atttcatcaa taataaagaa ataatcatga ttcttgtcag actctgcttt tttgcagaaa
    19441 gtatagaatg cccctcttct cagctcaaag ccacttgtcg aaggtctaaa gcccatgatg
    19501 aagtcctcgt aggaatagct ttggtgaaac tgaattgtca tgaccctttc taaatctggt
    19561 ttacccatta atgaaaatgc taggcgctct gcaacaaacg tctttccaac tcctggcgct
    19621 ccttgtaaga tgatattctt tttcatttgg agtatggagg ttaattgatc atactcttct
    19681 tctgtcatat agacttctga taggaagtga tttttcgtat agctatcttc tactacatct
    19741 tcactaccta tctcgtttcc agtatcagct tcctcagcca gtggagaaat tgcgccagca
    19801 cttcttttct tctcttcttg attgtatttc caagccatgg atgataattc tttaaaattt
    19861 ttcagtttgc tctctgcact ctttaaatat tgaagtatag aatctgaaat atcaaaatac
    19921 tcatcagcag aaatttttga cttcatcttt ggcaattttt ggacaatgtc agcaggaatc
    19981 tccccagact catacacata cgtttcattt tgactatcta agttcaagaa aaagtcagga
    20041 gcaatccaat acaaggccat cgtaatcttg ctgttgccat ttcctttctt gtttatagcc
    20101 aaatcaaaat agtgtgaaaa tttttctttc ttctcagccg taggctcctt gctataggtc
    20161 aaagcagcaa tgaaaagttc ccataagtca tcaatatcat tctcatcacg atctccgatg
    20221 aagtaataga aagtcgcatt ctgattattc agtactggta tgctttcaaa agaggatggg
    20281 atttccgctt ggaggtggaa taattctgct atagctgtca gaattttgat gcgattctct
    20341 tctgttattc tcttattgaa gagtccaaat atcgtaaagg gatcaatatc catcagttga
    20401 ttgtcctttt ctaacgtggg catatgtatc ttggttttgg tatagatagc ttttactttc
    20461 tcaaccagct ctgctctatt atctttatag tctaccaatt tccaagcaaa ttccttataa
    20521 aagtttaccc aattgaattg attttgttca tccatagtat cctccaacgg tgttgtatct
    20581 acacctatta aattatgagt tcgaatttac ctatatttta tcattaaaca ttcctgtcgt
    20641 aaacttagaa tttatatact tgtgtaaccg tttaatgtgg tacctaaaaa tagttgcttt
    20701 tgatatttat atatgataat atataactga aaacgtttta gaaaggtgtg atggctatgc
    20761 tgaaatactc gaaagtgctg ttacttgtct tgcttattgc cactggtcta tcttgtattg
    20821 gaatctactg gctcggaaaa gagcaaaata gac
//
LOCUS       DASFRC010000018        20227 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.018, whole genome shotgun sequence.
ACCESSION   DASFRC010000018 DASFRC010000000
VERSION     DASFRC010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 20227)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20227)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20227
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.018"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            53..574
                     /locus_tag="U1087_000486"
     CDS             53..574
                     /locus_tag="U1087_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM4754999.1"
                     /translation="MQIDPIRLEEVSVLQELAKQTFAETFAHDNDPKELEAFFELSYS
                     LEVLTRELSDPNCQYYFLRVDYQIAGYLKLNQGSAQTEQELENAFEIQRIYLLRAFQG
                     SGLGKVLFEFALEKAEQSNCDWVWLGVWEHNHKAQKFYAKYGFEKFGQHEFAVGDKID
                     VDWLLKRPLHQKG"
     gene            576..2975
                     /locus_tag="U1087_000487"
     CDS             576..2975
                     /locus_tag="U1087_000487"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002897790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HEM4755000.1"
                     /translation="MLVSYKWLKELVDFDATSHDLSEKMSTTGIEVEGVEQKSAGLSK
                     LVVGQVVSAEPIPDTHLNICQVNVGEAITQIVCGAPNVKPGIKVIVALPGARIAGNYK
                     IKKGKIRGVESLGMLCSLSEIGVSDSVVPKVYADGIYHLPEDAVVGEPVFSYLDLDDE
                     IIELSITPNRADALSMRGVAHEVAAIYDSKVNFKPVALDESDKKASDVIEVAIESDKV
                     TAYTARVIENVTIAPSPQWLQNLLMNAGIRPLNNVVDITNYILLYFGQPMHAFDFDKF
                     DGKKIVARQAKEGESLVTLDGEERDLIADDIVISVGDKAVALGGVMGGANTEIDNNSQ
                     TVVLEAALFDGKSIRKTSGRLNLRSESSSRFEKGINVATLTEAMDTAAAMITELAGGQ
                     VLSGIVSAGSVDTSDVPVTATIDYVNRSLGTNLDYAQIADIFRRLGMETTGDASQFTV
                     AVPRRRWDIRIPADLVEEIARIYGYNNLPTTLPKEDGTAGELTLTQNIRRQVRSLAEG
                     AGLTEIISYALTTPEKAVEFAARPTTVTELMWPMTVDRSALRQNMVSGMLDTVAYNVA
                     RKNKNLALYEIGKIFEQSGNPKEDLPQEINKFALVLTGLVAEKDFQTPAVPVDFFHAK
                     GILEAIFGHYKLAVDFVATSEIAALHPGRTAEIHLNGAVIGFVGQVHPQTAKDYGIPE
                     TYVAEINLDAIEEALQPAQPFTEISKFPAVSRDIALLLSSDVKHQDVLDAIAGAGVKR
                     LTKVTLFDVYAGSNIEAGKKSMAYNLTFQNPADSLTDEEVAKYMEKISKALVELGAEI
                     R"
     gene            3030..3296
                     /locus_tag="U1087_000488"
     CDS             3030..3296
                     /locus_tag="U1087_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2087 domain-containing protein"
                     /protein_id="HEM4755001.1"
                     /translation="MNTQDIQEKFFREGKLIVIPKKLKSKQVLFAYLQEELAKKGSAF
                     TEKEVNAFLAEIYDDYAILRRYLVDYGYLSRDQYGLEYRIEEKR"
     gene            complement(3317..3619)
                     /locus_tag="U1087_000489"
     CDS             complement(3317..3619)
                     /locus_tag="U1087_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755002.1"
                     /translation="MYEFVLEYGSFPVKLIDGFVNNRSEIPDFLKEDEEMIARLNEIN
                     ELFHQLFLTIECKFDYIGKQFPDKIEQLRELYHPLADDLLAKYGNQIELKIEPFIL"
     gene            3812..4555
                     /locus_tag="U1087_000490"
     CDS             3812..4555
                     /locus_tag="U1087_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate polymerase domain-containing
                     protein"
                     /protein_id="HEM4755003.1"
                     /translation="MKTRIVQKQFKRKETKYIVDKKTFELLEKELRQYMMADEFATST
                     ITNIYFDNEDFDMIQDSLAKKNGREKIRMRVYDAIPSESSQAFLEIKKKENKIGYKYR
                     LTSNPVSVANYIENGVIDSTIKDDKVNSELEMLRERYGTIKPKMYIYYDRVSYKGIED
                     KKVRLTIDKNLLYRDYDVDAMEGKFGKNLLDPTKVIMEVKVPEERPDWLVALLEKYQI
                     EKQSFSKYGNAYKLAHNITGEEVSQHAVV"
     gene            4542..5219
                     /locus_tag="U1087_000491"
     CDS             4542..5219
                     /locus_tag="U1087_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4956 domain-containing protein"
                     /protein_id="HEM4755004.1"
                     /translation="MQLFNSIFSTANSNITLAQMSMVFGVSLSMGVLLAAVYKYKSNY
                     TKEFVITLSLMPALIAVIIALVNGNLGAGVAVAGTFSLIKFRSAAGSSKEMLAVLLAM
                     AIGLATGMGFLGLAVFMTVILSACILIFENISFAQVNQNRRHLLVTVPMNFDYDQFFE
                     NQFGKSCKQSDLLSLKYKKKKEALVLEYQVLLDKKITDKRLVDTVLSAGPLDVVLNKQ
                     MPKKKYL"
     gene            complement(5268..5750)
                     /locus_tag="U1087_000492"
     CDS             complement(5268..5750)
                     /locus_tag="U1087_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase"
                     /protein_id="HEM4755005.1"
                     /translation="MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKL
                     EPGETPQACAIREIFEETGLTVTKHALKGVITFPDFTPNTDWYTYVFKITGFEGSLID
                     CNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGGKLLDYSVDFYEE
                     "
     gene            5917..6480
                     /gene="folE"
                     /locus_tag="U1087_000493"
     CDS             5917..6480
                     /gene="folE"
                     /locus_tag="U1087_000493"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HEM4755006.1"
                     /translation="MSKQEQIEQTIYQLLELLGEDPNREGLLDTPKRVAKMYLEMFNG
                     LEEDPKDQFTAVFSEGHEEVVLVKDIPFHSMCEHHLVPFYGIAHVAYIPSKGRVTGLS
                     KLARAVEVASRRPQLQERLTHQVAHALQDALEPEGVFVMVEAEHMCMSMRGIRKPGSK
                     TVTTVALGKYKEDAILRRELLSMIHNK"
     gene            6489..7301
                     /gene="folP"
                     /locus_tag="U1087_000494"
     CDS             6489..7301
                     /gene="folP"
                     /locus_tag="U1087_000494"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEM4755007.1"
                     /translation="MSIEQLANQVTIMGILNVTPDSFSDGGHYNEVESALVQVEKLLA
                     EGATVIDVGGESTRLGATFVSEEDEIARVVPIIRAIKENYDCLVSVDTYKTGTARAAL
                     EAGADILNDVWAGLYDGDMLALAAEYKVPIILMHNQKDESYADVVGEVKNFLAERAQA
                     ALDAGVSADQIWLDPGFGFSKNVQHNLDLLQGLEQITALGYPVLFGISRKRVVDYLLG
                     GNSLPTDRDQATAALSAWAVQKGCKMVRVHNVAANRDIVKVWDQLTSGGQHG"
     gene            7294..7656
                     /gene="folB"
                     /locus_tag="U1087_000495"
     CDS             7294..7656
                     /gene="folB"
                     /locus_tag="U1087_000495"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HEM4755008.1"
                     /translation="MDKISLNKCRFYGYHGAFKEEQVLGQIFTVDCDLFVDLTAASQT
                     DNLEDTVHYGMVFETIKAVVEGKPYILIEKVAGVICQELFDQFPKVEKIRLAIYKENP
                     PIAGHYDSVGIELERERP"
     gene            7653..8141
                     /gene="folK"
                     /locus_tag="U1087_000496"
     CDS             7653..8141
                     /gene="folK"
                     /locus_tag="U1087_000496"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HEM4755009.1"
                     /translation="MKHLAYLSIGGNMGNRQAYLQAALDKLASHPGCQLGLVSNIYET
                     PAWGKTDQADFLNLACQVYTDLSAQDFLSACQNIEQELDRVRIEKWGQRTIDLDIIFW
                     DEEKIQEENLIVPHPYAHERAFVLNPLAEIASDYRHPILKKVVSDLLAELGEQKDIKI
                     FK"
     gene            8192..9502
                     /locus_tag="U1087_000497"
     CDS             8192..9502
                     /locus_tag="U1087_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HEM4755010.1"
                     /translation="MTILATLGVLLAIVAIIYWTSKNLHVIIAAPLASLIIILTNQMN
                     VLEVMLGKEQSYMAGLAGFLINNFAIFMLGSILARYMEASGATQTIANSILKVMGKDS
                     PYKGLLAITLIASILTYGGVSIFVVIFTLLPLSRPLFKELNINWALFPIPVFLGAGTY
                     TMTTLPGAPSIQNVIPTKVLGTSLTAAPVISLAASLTLLVFGLLYMAYCLKKSLANGE
                     TYTEEEDETAVVVADKTPNLFLSVLPLFSLIGTIFLMSKTPNVLAIGLLVSILLSALI
                     FYPYLPNQKEILNAATTASIVPAFATSSTVAFGTVLTLSAGFAVIQEWIQQIPGSPLI
                     SLSVSTALVSGIIGSSSGAVGIASSNFLPAYLEMGINPELLHRVVVVASAILTVVPQS
                     GVMITFHNLSKLSMKRGLKYSFILVTVGHLLALFVILLLAPLLY"
     gene            complement(9785..11023)
                     /locus_tag="U1087_000498"
     CDS             complement(9785..11023)
                     /locus_tag="U1087_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEM4755011.1"
                     /translation="MNQNVTNLKLAERGALLSIGAYIVLSGIKLVAGQLFHSDALRAD
                     AFNNISDIIGNIAVLIGLKMAQKPADTDHKFGHWKMEDLASLITSFIMFVVGFQVLYD
                     TLQKLISNSSVEVDIMGAIVGIFSALVMLAVYLYNNRLAKKVRSKALEAAAKDNLSDA
                     VTSIGTSIAIFAAAFNLPIVDKIAAIIITFFILKTAYDIFMESFFTLSDGFDENLLKK
                     YEEDILKLPKIVSVKSQRGRTYGANIYLDVVLEMNPDLSVYESHEVTEQVEQLLTLKH
                     GVFDVDIHVEPSEIPHDEMYEHVYDKLFRFETEIQAHANGYEELIDDQYLLIDAKGHY
                     RNKTQILADHPIQTTYLSNYQMTSISHKSKLVTFEIGEYVHTSLWRRHENWTVIFHQI
                     SKKQASQIEATEKISDLHNP"
     gene            complement(11080..11532)
                     /locus_tag="U1087_000499"
     CDS             complement(11080..11532)
                     /locus_tag="U1087_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HEM4755012.1"
                     /translation="MTPVHFLLQALASYIAIAAFLIVLNVQRKMLVPGGLLGMLVWLI
                     YLLLLEPTNVLIATFFAAIIGSCVSQIMSIWLKTPSVIFSLAILAPLVPGYRAYMTTT
                     YFVSGDHAQALTNITTVLTLALVIPIGMASGTILLRLYKVLRTGKKAA"
     gene            complement(11536..12294)
                     /locus_tag="U1087_000500"
     CDS             complement(11536..12294)
                     /locus_tag="U1087_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HEM4755013.1"
                     /translation="MENTPRLNLVIDVLMLAGAILAQSGAEIHRVEDTMIRIAHSHGI
                     EQANVLAIPAAIFFSIDHTNISRMKRIVNSNYDMQKVCDVNQISRSLANEEISLEEAW
                     SQLNAIKQQKPPYNNIQITLAAVVAAPFFTIMFGGSLLDAAGAVLATALAFPISLIVE
                     RYIGIDFVTTFVGAFVFSLTSYLLSATTTLPINPNLINAGAVMPFVPGIAFTNAVRDL
                     MTNHINTGMTKFFQTALIILSLGAGTTVAFMLVR"
     gene            12455..12880
                     /locus_tag="U1087_000501"
     CDS             12455..12880
                     /locus_tag="U1087_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM4755014.1"
                     /translation="MQEMEDLLYRLKVADETISNLFEKQLGISLTRYSILQTLLKDAP
                     LHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITNP
                     SAHHQAIKTSMNQILTVEESEQFLATLDKLLIGLQNLPI"
     gene            12900..13259
                     /locus_tag="U1087_000502"
     CDS             12900..13259
                     /locus_tag="U1087_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1304 domain-containing protein"
                     /protein_id="HEM4755015.1"
                     /translation="MSIFTTILASIVAIEHLYIMYLETFATHSDSTSRVFNMEKEELQ
                     RKSVTTLFKNQGIYNGLLAVFLIYGIFTGNLEVTTIFVLFVIGAAGYGAATSSPKIIL
                     TQGGPAILALISILLFK"
     gene            complement(13295..14149)
                     /locus_tag="U1087_000503"
     CDS             complement(13295..14149)
                     /locus_tag="U1087_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat protein"
                     /protein_id="HEM4755016.1"
                     /translation="MKQIKPFTKISLSLFTLGTILSLIGYLAGGWTNMKTVAENYFQP
                     QTASFSNIRAIEVNEKLSIMPSPDNQFHLHYYRNQHKGIDLLSHQVQDGKLTISSAYQ
                     GIVTYDGLLEPILNLVNDQNVAYYQPVLQVPKNSTIESLSGSIQGDVYLDKVTIQDFQ
                     LFVENGDMLIENSHISLIRLLHINGEVAINQSTLTSPADITDTTGSILTVEDGDFKAE
                     NLKLEGKHGISNYDGSIDISLHPKTKTDIHIDASQNNLGIDLPTYSNPQATNYLYIST
                     LDGELNIQ"
     gene            complement(14136..14714)
                     /locus_tag="U1087_000504"
     CDS             complement(14136..14714)
                     /locus_tag="U1087_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1700 domain-containing protein"
                     /protein_id="HEM4755017.1"
                     /translation="MNRKEYLQKLEKYLKNLPKEDFQDTIDYFNEYFDEKENDEQAIK
                     ELGSPKEAAYEILANLYDKEKTEDKPNTRNMVWLTILSILAAPIGVPLAITLVALFIT
                     LLLIIFSLFLLFISLWIVLLSLAIAQLLLAFDLFTLSWSTSLLFTGLALVCLALTLLG
                     SKFTLDLGSKTFVLVLHWIQRKIRKGGYYETD"
     gene            complement(14726..15838)
                     /locus_tag="U1087_000505"
     CDS             complement(14726..15838)
                     /locus_tag="U1087_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat protein"
                     /protein_id="HEM4755018.1"
                     /translation="MTRADYLNQLEQALFQLHPSARQEALEYFNEYFDEKDNDEEAII
                     ELGTPDEAAKEIIANLPEDALITKKDQVSPHSSKPFDFDFDFDFQFDWENFFNNFKHS
                     TYQARERMELKAKCEELPEFSNLQILLEDQALSVQTYDRETVLLHNPVSEDGSYQAFD
                     YQLVQDSLYLTSKPSPNHLYFSNNQASSAILKIPKKLLPLTSLNLKTTDSRLSMADVQ
                     ASEQLVINAKDSSISMTKVSYPSSALRLEDATLTISDGQLSELKLEASDAVITLSSMS
                     LSDARITLEDCVWKLKDFVLEKSLNCQAEDSVLTYRPSTDISLDIWEEDSSLKLLKDK
                     AFTMMKEDDITHLSYKQENSPAQLVIHCQDCQLSIG"
     gene            complement(15835..16152)
                     /locus_tag="U1087_000506"
     CDS             complement(15835..16152)
                     /locus_tag="U1087_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEM4755019.1"
                     /translation="MYYPVSSILIEFLVLAIVEKQDSYGYEISQTIKIVADIKESTLY
                     PILKKLEKAGYVTTYTQEFQGRKRKYYTITPAGREHLPFLQGEWNSYKDHIDGIIEGS
                     LRK"
     gene            16283..17199
                     /locus_tag="U1087_000507"
                     /pseudo
     CDS             16283..17199
                     /locus_tag="U1087_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637837.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
     gene            complement(17235..17633)
                     /locus_tag="U1087_000508"
     CDS             complement(17235..17633)
                     /locus_tag="U1087_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755020.1"
                     /translation="MTEETLAQGILIGIWGTTLLFSFIWYILVAISNYILFKKAGYAG
                     WKSLIPIYNLYIQQCIAFGYEKRWFILFLLIPLAGPLYGIYLVYNFGRSFGLSAVQAI
                     FYVLLTPIFNLYIAFNDGSRYQGPQEFFID"
     gene            complement(17764..18984)
                     /gene="pepT"
                     /locus_tag="U1087_000509"
     CDS             complement(17764..18984)
                     /gene="pepT"
                     /locus_tag="U1087_000509"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HEM4755021.1"
                     /translation="MKYPTLLDRFLVYVKENTRSDEHSTTTPSTQNQVEFAQNILLPE
                     MKRIGLQNVHYLPNGFAVGTLPANDPSLTRKIGFIAHMDTADFNADGVNPQIIENYDG
                     NPIALGTSGYELHPKDFPQLANYQDQTLITTDGTTLLGSDDKSGIAEIMTAIEYLVQN
                     PDIKHCEIRVGFGPDEEIGVGADKFDVEDFDVDFAYTMDGGPLGELQYETFSAAGAKI
                     DFLGRNVHPGSAKDQMINAFQMAIDFHNALPEADRPEKTEGYEGFFHLMNMEGSVDTA
                     STTYIIRDFEEADFQARKQLMLDIAEKMNANFDTPRVIVNLHDQYYNMKKIIEKDMTP
                     INIAKDVMENLGIKPLIEPVRGGTDGSKISFMGIPTPNIFAGGENMHGRFEFVSLETM
                     EKAVDVILGIVAYK"
     gene            complement(18994..19809)
                     /locus_tag="U1087_000510"
     CDS             complement(18994..19809)
                     /locus_tag="U1087_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM4755022.1"
                     /translation="MIKLIALDMDGTLLNEKKELMQPQIDAIHQAVEAGVKIVLCTGR
                     PLAGVKPFVEQLGFDTEEEFIIVNNGCSTHSTKDWSLIDWEELSISDIDYLSTFIEND
                     DVQISLFDEEDYFVLAEKANARVNLDAGLVGMTPQPIVLKEAQSGQHRFFEAMFVGEK
                     EHIDAFENQHNPILSQGYSTVRSQDYLLEILPNGASKATGLKKLADRLGILPEEIMAM
                     GDANNDLEMIEFAGLGIAMGNANEQVKAIAQDITDTNENNGVAKAIEKHILNK"
BASE COUNT         5728 a         3832 c         4571 g         6096 t
ORIGIN      
        1 ggtagccgtt ctagcggttt acctagccca gttagaaatg agaggcaatg agatgcagat
       61 tgatcctata cgtttggaag aggtttctgt tttgcaggag ctggctaagc agacttttgc
      121 agagaccttc gctcacgata atgacccgaa ggaactggag gcattctttg agttgtctta
      181 ttccttggag gttttgacaa gggagttgtc tgatcccaac tgccagtatt attttcttag
      241 agttgattat cagatagctg gttacctcaa gctcaaccag ggttctgccc agacggagca
      301 ggagctggaa aatgcctttg aaattcagcg tatctatctc ttgcgggctt ttcaaggtag
      361 cggtcttggg aaggtcttgt ttgaatttgc tttggaaaaa gcagagcagt ctaactgtga
      421 ttgggtctgg ctgggagtct gggaacacaa tcacaaagca cagaaattct atgcaaaata
      481 cggatttgaa aaatttggcc agcatgaatt tgcagtcggt gataagattg atgtggattg
      541 gctactgaaa cggcctttgc accagaaagg ataatatgtt agtaagttac aaatggttaa
      601 aagaactcgt tgactttgat gcgacaagcc atgacttgtc tgaaaaaatg tcaacaacag
      661 gaattgaagt agaaggggtt gagcaaaaga gtgctggcct ttctaagttg gttgtcggtc
      721 aggttgtgtc tgctgagcca attccagata ctcacctcaa tatttgtcag gtaaatgtgg
      781 gcgaagcaat cacgcaaatt gtttgcggtg ctccgaatgt caagcctggc atcaaggtga
      841 tcgtcgctct gccaggagct cgtatcgctg gcaactacaa gattaagaaa ggcaaaatcc
      901 gcggagttga gtccttgggt atgctctgct cattgagcga aatcggcgtg tccgactcag
      961 ttgtgccaaa agtctatgcg gacggtatct accacctgcc agaagatgca gtcgtgggtg
     1021 agccagtctt ttcatatctt gacctcgacg acgagattat tgagttgtcc atcacaccaa
     1081 accgtgccga cgccctctct atgcgtggtg tggctcacga agtggcagct atctatgaca
     1141 gcaaggtcaa ctttaagcct gtagccttgg atgaaagcga caagaaggcc agcgatgtga
     1201 ttgaagtggc cattgagtca gacaaggtga ctgcttacac ggcccgtgtt attgaaaatg
     1261 tgactatcgc accgagcccg cagtggttgc aaaacctgct catgaacgca ggtattcgcc
     1321 cgctcaacaa tgtggtggac atcaccaact acatcttgct ctacttcggt cagccaatgc
     1381 acgcctttga ctttgacaag ttcgacggca agaaaatcgt ggctcgtcag gcaaaagagg
     1441 gtgagagcct ggtgacgctt gacggtgaag agcgtgactt gattgccgat gacatcgtca
     1501 tttccgttgg ggacaaggcg gttgccctcg gtggtgtaat gggtggtgct aacacagaga
     1561 ttgacaacaa ctctcagacc gttgtgctgg aagctgccct ttttgacggc aagtctatcc
     1621 gcaagacctc aggtcgcctc aaccttcgct ctgagtcctc ttctcgcttt gaaaaaggca
     1681 tcaacgtggc aactttgacg gaagctatgg atacagcggc tgctatgatt acggaactgg
     1741 ctggcggtca ggtcttgtct ggcatcgttt ctgcgggcag cgtggatact tcggatgtcc
     1801 cagtcacagc gaccattgat tacgtcaacc gctcgctcgg gaccaatctg gactatgccc
     1861 aaatcgcaga tattttccgt cgtttaggta tggaaacaac tggcgatgca agtcagttta
     1921 cagtagcagt accgcgtcgt cgttgggaca ttcgcattcc agcagacttg gtagaggaaa
     1981 tcgctcgtat ctatggttac aataatctgc cgaccactct tccgaaagag gacggaacag
     2041 caggtgagtt gaccctgacc cagaacatcc gtcgtcaagt tcgtagcctg gcagaaggtg
     2101 caggtctgac agaaatcatt tcttacgctc tgacaacgcc tgaaaaggct gtggagtttg
     2161 cggctcgtcc aaccacagtc accgaactca tgtggcctat gactgttgat cgctctgccc
     2221 tccgtcagaa catggtgtct ggtatgttag acacagtggc ctacaatgtg gctcgtaaga
     2281 acaagaactt ggctctttac gaaatcggta aaatctttga acagtctggc aatccaaaag
     2341 aggacctgcc acaagaaatc aataagtttg cccttgtctt gactggtttg gtagctgaga
     2401 aagacttcca gacaccagct gtaccagttg atttcttcca tgccaaaggg attttggaag
     2461 caatctttgg tcattataag ttggctgttg actttgtggc gactagtgag attgctgcct
     2521 tgcaccctgg tcgtacagct gaaatccatt tgaatggggc tgtgatcggc tttgtcggtc
     2581 aggtacatcc tcaaacggcc aaggactacg gtattcctga gacctatgtg gctgaaatca
     2641 atctggatgc gattgaagaa gctctccagc ctgctcagcc atttaccgaa atctctaaat
     2701 tcccagcggt tagccgtgat attgccctgc tcttgagcag tgatgttaaa catcaggatg
     2761 tcctggatgc cattgctggt gctggcgtga aacgcttgac taaagtgacc ctctttgatg
     2821 tctatgcggg tagcaatatt gaggctggta agaagtctat ggcttataac ctgaccttcc
     2881 aaaatcctgc ggatagcctg acggatgagg aagtggctaa gtatatggag aaaattagta
     2941 aggctttggt tgagcttgga gctgaaatcc gttaacatgt aaatcttgtg aaatcctagt
     3001 cagcgggcta ggattttttg gagggaagta tgaacactca agatattcaa gaaaaatttt
     3061 ttcgagaagg caagcttatc gttattccta aaaaattaaa aagtaagcag gtcttgtttg
     3121 cctatttaca agaagagttg gctaagaaag gctcggcatt cacagaaaaa gaagttaatg
     3181 cctttctagc tgagatttat gatgactatg ctatattgag acgctacttg gtggattatg
     3241 gttacctatc gcgtgaccag tatggtttgg aatacagaat agaagaaaag agatgattgc
     3301 ggtcatctct tttgtcttac aaaataaagg gttcaatctt caactctatc tggttgccat
     3361 acttggctag taaatcgtct gccaggggat gatagagttc tcgtagttgt tcgatcttgt
     3421 cagggaattg tttcccgata tagtcaaact tgcattcgat ggttaagaaa agttggtgga
     3481 agagttcgtt gatctcgttc aagcgggcaa tcatttcttc gtcttctttg agaaaatcag
     3541 gaatttctga gcgattgttg acaaaaccgt cgatgagttt tacggggaaa gagccgtatt
     3601 ctaggacaaa ttcgtacatg ggtttctcct tgccttacta ttgataggac tattgtagca
     3661 tagattagaa tgtgacaaaa gaatttcaac tttattgcag tttaagtttt gtttaatttt
     3721 attttcagtt tcatttaaag ctaagtcggt agactatatc ttgtaaacaa gacagggacc
     3781 tgtaaaaatt taggatagaa gaggcacaat aatgaaaaca agaatcgtac aaaagcagtt
     3841 taagcgtaaa gagactaaat atatcgttga taaaaaaact tttgaacttt tagaaaagga
     3901 acttcgtcag tatatgatgg cagatgagtt tgcgacatca acgattacca atatctactt
     3961 tgataatgaa gattttgata tgattcaaga ttcacttgcc aaaaagaatg gacgtgagaa
     4021 aattcgtatg cgtgtctatg atgcgatacc atctgaatcg agtcaagcct ttcttgaaat
     4081 taagaaaaaa gaaaataaaa ttggctataa ataccgttta acttcaaacc ctgtttctgt
     4141 agcaaattat atcgaaaatg gagtgattga ttccacaatc aaggatgata aggtaaactc
     4201 agaactcgaa atgttgagag aacgctacgg gactattaag ccgaagatgt atatctacta
     4261 cgatcgcgta tcctataaag gaatcgaaga caaaaaagtt cgtctcacaa tcgataagaa
     4321 cttactttat cgagactacg atgtggatgc aatggaaggt aaatttggta agaacctatt
     4381 agacccaacc aaagtaatca tggaagtaaa agttccagaa gaacgaccag actggttggt
     4441 agccctgctc gaaaaatacc aaatcgaaaa gcaatcattt tcaaaatatg gcaatgccta
     4501 taagcttgcc cacaacatca ctggagagga agtaagtcaa catgcagttg tttaatagta
     4561 tcttttcaac tgccaatagc aatattacct tagcgcagat gtccatggtt tttggagtta
     4621 gtctatccat gggggtactc ttagcggctg tttataaata taaatctaat tatacaaagg
     4681 aatttgtcat cacactaagt ttaatgccgg cattgattgc tgttattatt gcattagtta
     4741 atggtaactt aggagcgggt gttgcagtag cagggacttt cagtctaatt aaattccgct
     4801 cagcagcagg ttcttcaaag gaaatgcttg cagtcctctt agcgatggca atcggtctag
     4861 cgacagggat gggcttccta ggtttggctg tcttcatgac ggtcatccta tctgcttgta
     4921 tcttgatttt tgaaaatatc agctttgccc aagtcaatca aaatcgtcgt catctcttgg
     4981 tgacagtgcc aatgaatttt gactacgatc aattttttga aaatcaattt ggtaaatctt
     5041 gcaagcagtc tgatttatta tcccttaaat acaaaaagaa aaaagaagca cttgttttag
     5101 aatatcaagt ccttcttgat aagaaaatta cagataaacg tttggtagat acagtattgt
     5161 cagccggtcc cttggatgtc gtattaaaca agcaaatgcc gaagaagaag tatttgtaat
     5221 atcaaagaag ccctggattt ccaaggcttt tttcgttttt tattagctta ttcttcataa
     5281 aaatcaacac tgtaatcaag cagtttgccc ccatcatagc ggaagcaagc ggaaaaaaat
     5341 ggtttgtcct ctaatagcca ttcttgaaaa tgccggtcgc cctcccaagt tggtttggac
     5401 aagacttggt catagggaac ccactctaag tcaccttcat tgcagtcaat aagacttcct
     5461 tcaaaaccag ttatcttaaa gacataggtg taccagtctg tgtttggagt aaagtctggg
     5521 aaggttatca ctccttttag agcatgcttt gttacagtaa gcccagtttc ctcaaagatt
     5581 tctcgaatgg cacaagcctg tggcgtttcg ccgggttcta gtttgccacc aactccaatc
     5641 cattttcctt gatggacatc gttttctttc ttgtttcgat gaaggagaag aaattcctta
     5701 ccattatcaa tgtagcaaat cgtagcgagt tggacgggtt tcttggtcat agaggctcct
     5761 tgtagttgat ttatcctatt ataccacaaa ggtgggagta gggacacctg cttgttgctc
     5821 tgatagggga cagttttagg attagcatac tgaaagccct tttctgaaaa cagtttttga
     5881 ggtataataa gaacatcaaa ctatttagga tgcactatgt caaaacaaga acaaatcgaa
     5941 caaacaattt atcaattatt agaattattg ggtgaggacc cgaatcgtga aggtttatta
     6001 gatacgccta aacgggtcgc taagatgtat ttagaaatgt ttaacggcct agaagaggat
     6061 cccaaagacc aatttacagc tgtcttttca gaaggtcatg aagaggttgt tttggtcaag
     6121 gatattcctt ttcattctat gtgtgaacac catttggtac ccttttatgg cattgcccat
     6181 gtagcttata ttccgagtaa ggggcgtgtg acaggcctta gcaaattggc gcgtgcagtg
     6241 gaggtagcaa gtcgtcgccc tcaattgcag gaacgcttga cccatcaggt tgcccatgcc
     6301 cttcaagatg cccttgaacc agaaggtgtt tttgtcatgg tcgaagcaga gcacatgtgc
     6361 atgagcatgc gtggtattcg caagccaggt agtaagacag tgaccacagt tgctcttggc
     6421 aaatacaagg aagatgccat cttgcgccgt gaactcttgt ccatgattca caataaatag
     6481 gaggttctat gtcaatcgaa cagttagcga atcaagtaac cattatgggg attctcaatg
     6541 tgacgccaga ttcattttca gatggtggtc actataatga ggtggagtct gccttggtac
     6601 aagtagaaaa gttgttggct gagggtgcta ccgtcattga tgttggtggt gagtccactc
     6661 ggctaggtgc aacatttgtg tctgaagaag acgagattgc tcgcgtggtt ccgattatcc
     6721 gcgctatcaa agaaaactat gactgtcttg tcagcgtcga tacctataaa acaggaactg
     6781 cacgtgcagc cttggaagca ggcgcagata ttttaaatga tgtctgggca ggactttatg
     6841 atggagatat gttggccctg gctgcggagt acaaggtacc aatcattctt atgcacaacc
     6901 agaaagacga aagctatgcg gatgttgttg gagaggtcaa aaactttcta gctgagcgtg
     6961 cccaagcagc acttgatgct ggtgtttccg cagaccagat ttggttggat ccaggatttg
     7021 gcttttcaaa gaatgtccaa cataaccttg atctcttaca aggtttggaa cagattactg
     7081 ctcttggtta tcccgttcta tttggaatat ctcgtaagcg cgtggtggat tatctgcttg
     7141 ggggcaatag cttaccgact gaccgcgatc aagcaacggc agccttgtct gcctgggcag
     7201 ttcaaaaagg ctgtaaaatg gtccgtgttc acaatgtcgc tgccaaccgt gatatcgtta
     7261 aggtttggga ccaattgact tctggaggtc aacatggata agatttcact taataaatgc
     7321 cgtttctacg gctaccatgg tgccttcaaa gaagaacaag ttcttggtca aattttcacg
     7381 gttgactgtg atttgtttgt tgacctgaca gcagcttcac aaactgacaa tttagaagac
     7441 acagttcact atggtatggt ctttgaaacc attaaagcag ttgtggaagg caagccctac
     7501 atccttatag aaaaggtagc aggtgttatt tgtcaggagc tttttgatca atttccaaag
     7561 gtggagaaga ttcgcttggc catttacaag gaaaatccgc ctattgctgg acactatgat
     7621 tctgtcggaa ttgaattgga gcgtgaacga ccatgaagca tctagcctat ctcagtatcg
     7681 gagggaacat gggcaatcgg caagcctatt tacaggcagc tctagacaaa ttagccagtc
     7741 atccaggttg ccagcttggc ttagtttcca atatttatga aactccagct tggggcaaga
     7801 ccgaccaggc tgatttcctc aatctagcct gtcaagtgta tactgatttg tctgctcaag
     7861 attttctaag cgcttgccag aacatcgaac aagagttgga ccgagtacgg attgaaaaat
     7921 ggggacaacg gaccattgat ttggatatta ttttttggga tgaggagaag attcaagaag
     7981 agaatctgat tgtcccccat ccctacgccc atgaaagagc atttgttctc aaccctcttg
     8041 ctgagattgc ttctgattac cgtcacccaa ttttgaaaaa agtggtatcg gacttgcttg
     8101 cagaactagg ggaacaaaaa gatataaaaa ttttcaaata gttgcctctg atactaggtt
     8161 tattagagga tagaatagat aaaggagttt tatgacaatt ttagcaactt taggagtttt
     8221 attggctatt gtagccatta tttattggac atcaaaaaat ttacatgtta tcattgctgc
     8281 accactagct agtttaatca tcattctgac caatcagatg aatgttttgg aagttatgtt
     8341 gggcaaagag cagtcttata tggcgggctt agcaggtttt ttgattaata attttgccat
     8401 ctttatgttg gggtctatct tggcacgtta tatggaggca agtggagcta cgcagacgat
     8461 tgccaatagc attttgaaag taatgggaaa agatagtccc tataagggtt tgttagccat
     8521 cactttgatt gcttccattc tgacctatgg tggtgtgagt atttttgtag ttatttttac
     8581 cttgcttccc ctttcacgcc cactctttaa agagttgaat atcaactggg cactttttcc
     8641 gattcctgtc tttttgggag caggtactta tacgatgaca actcttcctg gggcaccttc
     8701 catccagaat gttattccga caaaagtttt gggaactagc ttgaccgcgg cacccgttat
     8761 cagtttggca gccagcttga cgctattagt atttggcttg ctctacatgg cctactgcct
     8821 caagaaaagt ctagcaaatg gagagacgta tacagaagaa gaggatgaaa ctgcagtagt
     8881 ggtagctgat aagacaccaa atctattttt atcagtcttg cctctattca gtcttattgg
     8941 gacgattttc ctaatgagta aaactccgaa tgtcctagca atcggattgt tggtctctat
     9001 ccttctatca gccttgattt tttatccata tctgccaaat caaaaagaaa ttttgaatgc
     9061 tgcgacaaca gcatccatag tgcctgcttt tgcaacttct agtacagtag catttgggac
     9121 ggtgttaacc ttgtcagcag gttttgcagt cattcaagaa tggattcaac aaataccagg
     9181 atcgccgctg attagtttat ctgtttcgac agcattggtt agtggtatta tcggttcatc
     9241 ttctggtgca gtaggtattg cttcaagtaa tttccttcct gcctatttag aaatggggat
     9301 taatccagag ttgctgcatc gtgtagtagt tgttgcatca gctatcttga cagttgtgcc
     9361 tcagtctggc gtgatgatta ccttccacaa tctttcgaaa ttaagtatga aacgtggact
     9421 caagtattca tttatcctag tgacagttgg gcatttgtta gccttatttg tgattttact
     9481 gttggcacct ttgctatatt aggattgatt aacaaacaaa taaaagccct gccaatgggc
     9541 aatatcattc agttaaaatc tctactcaaa tatttattcg ggtagaggct ttttctttat
     9601 aatataataa tcaatgaaat cccaaaacag taagctctaa tcttctatag ttatttagct
     9661 tttatcatat actaaacaaa aactaaataa ctacaaattg agtataaaag actgataata
     9721 gctcaaaggg aaggttaaaa aataggaatt ctccctataa tccagggaaa attcctattt
     9781 tttattatgg attatgcaaa tcagagattt tttcagtagc ttcgatctga gaggcttgtt
     9841 tctttgaaat ttgatggaaa ataacagtcc aattttcatg acggcgccaa agtgacgtat
     9901 gaacatattc gccaatttca aacgtaacta attttgattt atggctaata gatgtcattt
     9961 ggtaatttga taaatacgtc gtttggatgg ggtggtcggc aagtatctga gttttatttc
    10021 ggtagtggcc tttggcatca attaagagat actggtcgtc aatcaattct tcatacccat
    10081 tagcatgtgc ttgtatctct gtttcaaaac ggaagagttt gtcgtacaca tgctcataca
    10141 tctcatcgtg tggaatttca gatggttcta cgtgaatatc cacatcaaaa actccatgtt
    10201 tgagtgttag gagttgctca acctgctcag tcacttcatg actttcataa acggataagt
    10261 ctggattcat ttctaaaaca acatcaaggt agatattggc tccataagtc cgaccacgtt
    10321 gtgatttgac agaaacgatt tttgggagtt tgagaatatc ttcctcgtac tttttcaata
    10381 agttttcatc aaatccatca gatagggtaa agaagctttc cataaaaata tcgtaggctg
    10441 tttttaggat aaagaaggta atgatgatgg ctgcaatttt atcgacaata gggaggttga
    10501 aagccgcagc aaagatcgcg atagaagttc ctatggaagt gactgcatcg gatagattat
    10561 ccttggcagc tgcttctaag gccttggaac gtactttttt tgccaagcgg ttattatata
    10621 aataaacagc taacataact agtgcagaaa aaattccgac aatagccccc ataatgtcta
    10681 cttcgacaga agaattgctg attagctttt ggagggtatc atagagtact tggaaaccaa
    10741 cgacaaacat gatgaaggat gtaatcaagc ttgccaagtc ttccattttc cagtgtccaa
    10801 atttatgatc ggtatcagct ggtttctgtg ccatttttag tccaataagt acagcgatat
    10861 taccgataat atcagaaata ttattgaagg catctgctcg taaggcatct gaatgaaaga
    10921 gctgtcctgc aacgagtttg atacctgata agacaatata ggcaccgata gatagcaagg
    10981 caccacgttc agcaagtttt agattggtta cgttttggtt catagcatct cctttgataa
    11041 gttttcattt taacaaaaag gccccttatt ttcaaggggt taggctgctt ttttgccggt
    11101 tcgaagaacc ttataaaggc gtaataatat tgttccgctg gccataccga tgggaatgac
    11161 taaggctaaa gttaagacgg tagtgatatt ggttagggct tgagcgtggt ctccagaaac
    11221 gaaataagtc gtggtcatgt aggctcgata gcctggaaca agtggtgcaa gtatagccaa
    11281 tgaaaagatg acggagggtg tttttaacca aatactcatg atttgactga cacaggatcc
    11341 gataattgcc gcgaaaaagg tagcaatcaa gacatttgtt ggttccaata gtaaaagata
    11401 aataagccaa acaagcatgc ctaggagtcc accagggacc agcatttttc tttgaacatt
    11461 gagaacaatt aagaaggctg cgatagcgat ataagaggcg agtgcctgta ataagaagtg
    11521 aactggtgtc atagattacc tcacaagcat aaaggccaca gttgtacctg caccgagcga
    11581 taagataata agcgcagttt ggaaaaattt ggtcatccct gtattgatat gattggtcat
    11641 gaggtctctt acagcatttg taaaagcaat ccctggtaca aaaggcatga ctgcccccgc
    11701 attaatcagg ttaggattaa tggggagagt agtggttgcg cttaataaat aagaggtgag
    11761 tgagaagaca aaggcgccaa cgaaggtggt gacaaaatca attccaatat agcgctcgac
    11821 aattagtgag atagggaaag ctaaagctgt tgcgaggaca gcacctgctg catctaaaag
    11881 agaacctccg aacatgatgg taaaaaatgg agcggctact acggcagcta aggttatttg
    11941 gatattgtta taaggtggct tttgttgttt gattgcattt aattggctcc aagcttcttc
    12001 taggctgatt tcttcattgg ctagggaacg ggagatttgg ttgacgtcac aaactttctg
    12061 catgtcgtaa tttgaattga caatgcgttt catacgcgaa atattcgtat ggtcgatgga
    12121 gaaaaagata gcagcaggga tggcaaggac attagcctgt tcaattccgt gtgaatgtgc
    12181 aatacgaatc atggtatctt caactcggtg aatttctgca ccgctttgtg ccaaaatggc
    12241 accagcgagc atgagcacgt ctatgaccaa gtttagtcta ggagtgtttt ccataagtaa
    12301 gtcccatccc tctgctagtt attttcttaa ttataacaaa atataggtgt aggcaacata
    12361 tttttttata gagaggcaaa atagttgaaa attgttcgga ttatagtata attgacttat
    12421 caatgattga ttaatcaatc aaaagaggta gataatgcaa gaaatggaag atttgttata
    12481 cagattgaaa gtggcagatg agacgatttc caatcttttt gaaaagcagt tgggaatcag
    12541 tttgacacgc tattcaatat tgcaaacatt actaaaagat gcacccctgc atcagttggc
    12601 tttgcaggag cggcttcaga tagaccgcgc agcggttacg cgtcatctca aattgttgga
    12661 agagagcggc tatatcattc gcaagcgaaa tcctgacaat cagagagaag tacttgtctg
    12721 gccaactgag caggctagag aagcgctaat cacgaatcct tctgcccacc accaagctat
    12781 caaaacttcg atgaatcaga ttctaactgt tgaggagagc gagcaattcc tagccactct
    12841 tgataaactg ttgattggct tgcaaaatct acctatataa ttttttgaga ggagacatta
    12901 tgtctatttt taccactatt ctagctagta tcgtagctat tgagcaccta tatatcatgt
    12961 atttggaaac ctttgcgacc cattcagact ctactagtcg cgtattcaat atggagaagg
    13021 aagaattaca acgtaagtct gtgacaaccc tatttaaaaa ccagggaatc tataatggtt
    13081 tgttggccgt cttccttatc tatggaattt tcacaggcaa ccttgaagtg acaactattt
    13141 ttgtcttgtt tgttattgga gcagcaggct acggagcagc gacttctagt ccaaaaatca
    13201 tcttaaccca aggtggacca gctatcttgg ccttgatttc tattttgttg tttaaataag
    13261 ttaaaaagcc ttccgtgagg agggcttttt gcaattactg aatattcagt tctccatcta
    13321 gtgtagagat atagaggtaa ttagtggctt ggggattgga ataggttgga aggtcaattc
    13381 ccagattatt ttgactggca tctatatgga tgtcagtttt tgttttggga tgaagagaaa
    13441 tgtcgattga accatcgtaa ttactgatgc catgctttcc ctctagtttt aggttttctg
    13501 ctttaaaatc accatcctca acagttagaa tacttccggt agtatcggtg atgtccgctg
    13561 gacttgttaa tgtggactga ttgattgcta cttctccatt gatgtgtaat agcctaataa
    13621 ggctgatgtg actgttttca atcaacatgt caccattttc aacaaagagt tggaaatctt
    13681 gaatagtcac tttatccaga tagacatctc cttgaatgct ccctgagagt gattcgattg
    13741 tgctattttt agggacctgt aagacaggtt ggtagtaggc aacattctgg tcattgacaa
    13801 gatttaagat aggttcaagt aaaccatcat aagtaacgat accttgatag gcactagaaa
    13861 tggttaattt tccatcttgg acttggtgac tgaggaggtc aatgcctttg tgctgatttc
    13921 ggtagtagtg gaggtgaaat tggttgtcag gcgagggcat aatggacagt ttttcattaa
    13981 cttctatagc cctaatgtta ctaaaactgg ctgtttgggg ctgaaaatag ttttctgcaa
    14041 cagttttcat atttgtccaa ccgccagcaa ggtatccgat gagactgaga attgttccaa
    14101 gagtgaacag gctcagacta attttcgtaa atggtttaat ctgtttcata gtagcctcct
    14161 ttgcggattt ttctttgtat ccaatgtaaa acaagcacga aggttttgct tccaaggtct
    14221 agagtgaatt tactacccaa tagagtgagg gccaagcaga cgagggccag gcctgtgaag
    14281 aggagggagg tagaccatga tagtgtgaag aggtcaaagg cgaggagtag ctgggctatc
    14341 gccaggctga ggaggacgat ccagagtgag ataaagagta gaaagaggct aaagatgatt
    14401 aggagaaggg tgatgaagag ggcgaccaag gtgattgcta gggggacgcc gattggggcg
    14461 gcaaggatag agaggatggt aagccagacc atattgcggg tatttggctt atcctcagtc
    14521 ttctctttat catagagatt ggctaggatt tcataggcgg cttcttttgg actgcctaat
    14581 tctttaatgg cttgctcatc gttttccttt tcgtcaaaat attcattgaa atagtctatg
    14641 gtatcctgaa aatcttcttt tggtaaattt ttgagatatt tctcgagttt ctgtaaatat
    14701 tccttgcgat tcataggaac ctcctttatc ctatgctaag ctggcagtct tgacaatgaa
    14761 taactagctg agcagggcta ttttcttgct tatagctgag atgagtgatg tcatcctctt
    14821 tcatcattgt aaacgcctta tcctttagaa gtttaaggct agaatcttcc tcccagatgt
    14881 ccaaactgat gtccgtactc ggtctatagg ttaagacaga atcttcagcc tgacagttaa
    14941 ggctcttttc aaggacaaaa tccttcaact tccagacaca gtcttctaat gttatccttg
    15001 catctgaaag gctcatgctt gagagagtga taacagcatc gctggcttcc aattttaact
    15061 cgctcagctg tccatctgag atagttagtg tagcgtcttc taaccgtaga gcagagcttg
    15121 ggtagctcac tttcgtcatg ctgatgctgc tatcttttgc attgatgact agctgttcgc
    15181 tcgcctgcac atccgccatg ctcagcctgc tatctgtcgt tttcagattg agactagtaa
    15241 ggggcaggag ttttttaggg attttgagaa tagcagagct agcttgattg tttgagaagt
    15301 agaggtgatt aggggaaggc ttactcgtta ggtacaaact atcctgaacc agttgatagt
    15361 caaaagcctg atagctccca tcttcagaaa cgggattgtg caataagaca gtttctctgt
    15421 cataagtttg aacactcaga gcctgatctt cgagcaaaat ctgtagattt gaaaactcag
    15481 gtaattcttc gcatttcgcc ttcaattcca ttctttccct agcttgatag gttgagtgtt
    15541 tgaaattgtt gaaaaaattc tcccagtcaa attgaaagtc aaagtcaaaa tcgaaatcaa
    15601 atggtttaga agaatgtgga cttacttggt cttttttggt gattagggca tcttcaggta
    15661 gattggcaat gatttccttt gctgcttcat caggtgttcc tagctctata atagcttcct
    15721 cgtcgttatc cttttcgtca aagtattcat tgaagtactc taaagcctcc tgtctggcac
    15781 ttggatgaag ttgaaataat gcttgttcca gttggttcaa ataatcagcg cgtgtcattt
    15841 tcgtaagctc ccttctataa ttccgtcaat atggtctttg tagctattcc attcaccctg
    15901 caggaagggg aggtgttcac gtccagcagg agtgatggta tagtatttcc gctttctccc
    15961 ttgaaattct tgggtatagg tggtgacata gccagccttt tccaattttt tcaaaatagg
    16021 gtagagtgtg gattccttta tatcagcaac tatcttgatg gtttgactga tttcatagcc
    16081 gtaggaatcc tgcttttcca cgatggctaa gaccagaaat tcaatcaaga tagaggatac
    16141 ggggtagtac ataaactcac ctctttatct ttatgtaatt attttatata taaattatat
    16201 acctattgtt tagcgaaatc aagcgattat ataaaatttt tatatatcat caaaattctt
    16261 ttctatatgc tatactagtt tcatgaatga acttgaatta ttagctcgtg ctctcggttt
    16321 tatctttgtt atcggtttag gttatacatt aaaagtcaaa gggattgttc gaagggaaga
    16381 tgcaagaatc ttttctagct tagtgatgaa tattacgcta ccagcttctc tccttgtagc
    16441 ttcagcgaca gcccaagtat ctatagattt atatgttccc ttcatattag ggattctttg
    16501 taatcttttt ttggatatgg tgggatactg ggaagcgaag aagtctggtc aacagacttc
    16561 agtcggtctt atgcagttat caggctataa tatcggaacc tttacactcc catttgtgca
    16621 agcttttttt ccgctatcta gtctcctaag cgtcatcgta tttgatgcgg ggaatgcaat
    16681 cctggttcta ggtgggggaa ttacagtatc gcagctggtg tggatgaaga gcaggaaaga
    16741 atgaccgttg caacttttat aaagaatctt tcaagctcag ttccactagt agtctatcta
    16801 gttagcctat cgttagcagt ctgctctatc aaacttccac gcgaacttat ctctgcgctg
    16861 acgatagcca gtaacgccaa tcctttttta gccatgctca tgttgggaat cttgcttgat
    16921 ttaaaattga attggcaaga aattactcga ttggcctatc ttctctcttt gaggctgggt
    16981 gcgaatattc taatagcagg agtcatttat tttcttctac ctattgataa aacgatgaaa
    17041 atcatgttgc tggtctgtct agtctctccg atttcagtca tgtccccaat ttatgcatta
    17101 aagttaggta gtcgctcagc tgaacctgcc aatgttaact ccttatctat tttggtcagc
    17161 ctagtcatga tggttcttct tatttttcta ttcgtttaaa aaagcctccg cgtgtgcggg
    17221 ggcttgattg tatattaatc aataaagaat tcttgtggac cttggtaacg acttccatca
    17281 ttaaaagcga tgtagaggtt aaagataggt gtaagaagaa catagaagat agcttgtaca
    17341 gctgataaac cgaagctacg accaaaattg taaacgagat agatgccata taatggtcct
    17401 gctagtggaa tcagtaagaa tagaatgaac catctttttt catagccaaa ggcgatgcat
    17461 tgttggatat agagattgta gattggaatc aatgatttcc aaccagcgta gcctgctttt
    17521 ttgaagagga tgtagttgga aatagcaaca agaatatacc aaataaatga aaatagtagt
    17581 gttgtacccc aaatgccaat gagaattccc tgtgctaatg tttcttctgt catattaaaa
    17641 ctccatttct ttttgatggt tctattataa cagtattagt tcaataatac aagtggtttt
    17701 tcaaaaattt tgaaagattt tcagaaaaaa tcagaccttc aattgaaagt ctgaacaaat
    17761 tgtttattta tatgctacaa tacctaaaat cacatcaaca gctttttcca tggtttccaa
    17821 gctgacgaac tcgaagcgac cgtgcatgtt ttcgccacct gcgaagatat ttggcgttgg
    17881 aatgcccatg aaggaaatct tggagccgtc tgttcctccg cgaacaggct caatcagtgg
    17941 cttgatacct agattttcca tgacgtcctt agcaatgtta attggagtca tatctttttc
    18001 gatgattttc ttcatgttgt agtactggtc gtgtaggttg acaatgacac gtggagtgtc
    18061 aaaattggca ttcatctttt cagcgatgtc cagcatgagc tgtttgcggg cttggaaatc
    18121 tgcttcctcg aagtcacgga tgatgtaggt ggtagaagca gtatcgacac tgccttccat
    18181 gttcatcaag tggaagaaac cttcataacc ttcagttttt tcaggtcggt cagcttctgg
    18241 aagggcattg tggaaatcaa tagccatttg gaaggcattg atcatctggt ccttagcaga
    18301 tcctgggtgg acattgcgtc ctaggaaatc aatcttggca ccagctgctg agaaggtttc
    18361 gtactggagt tcgcccagcg gtccaccgtc catagtgtag gcaaaatcta catcaaagtc
    18421 ttccacatca aacttgtcag caccgacacc gatttcttcg tcagggccaa agccgacacg
    18481 gatttcgcaa tgtttgatgt caggattttg gactaggtac tcgatagccg tcatgatttc
    18541 tgcaattcct gacttgtcat cagatcctag caaggtagta ccgtcagtgg taatcagggt
    18601 ttgatcctgg tagttggcaa gttgtgggaa gtcttttgga tgcaattcat agccagaagt
    18661 tcctaaagcg attgggttac cgtcgtagtt ttcgatgatt tgtgggttga caccatctgc
    18721 attgaaatca gccgtatcca tgtgggcgat gaagccaatc ttacgggtca aacttgggtc
    18781 gttggcaggc agtgttccca cagcaaagcc gtttggcagg tagtggacat tctgtaagcc
    18841 gatgcgtttc atttcaggca gaaggatatt ctgtgcaaac tcgacttggt tttgggtaga
    18901 aggagtggtt gtcgaatgtt catctgagcg agtattttct ttgacataga ctaaaaaacg
    18961 gtctaagagt gttgggtatt tcatagtgtc tccttatttg ttcaaaatat gtttttcaat
    19021 ggctttggca acgccgttgt tttcattggt gtctgtgatg tcctgggcga tagccttgac
    19081 ctgctcgtta gcgttgccca tggcaatacc aagtccagca aattcaatca tttccaggtc
    19141 gttgttggca tctcccatag ccatgatttc ttctgggagg ataccgaggc ggtctgccag
    19201 ttttttcaaa ccagttgcct tgcttgcacc gtttggtaaa atttccaaca gatagtcctg
    19261 tgaacgaacg gtggaatagc cttggctgag tataggattg tgttgatttt caaaggcatc
    19321 aatatgctct ttttcaccga cgaacatggc ttcaaagaag cgatgctgac ctgactgggc
    19381 ttcttttaaa acaattggtt gaggagtcat tcctactaaa cctgcgtcta aattaacgcg
    19441 tgcattggct ttttctgcaa gaacgaagta gtcttcctca tcaaaaagag agatttgcac
    19501 atcatcattt tcaataaaag tggaaagata atcaatatca gagatagata gttcttccca
    19561 gtcaatcagg ctccaatcct ttgtcgaatg cgttgaacaa ccgttattga caatgataaa
    19621 ttcttcctca gtgtcaaagc cgagctgctc tacgaaaggt ttaacaccag ccaagggccg
    19681 accagtacaa agaacaatct tgacgcccgc ttcaacagcc tgatgaatgg catcaatctg
    19741 tggctgcatc agctcttttt tctcgtttaa aagggttccg tccatatcaa gagcgattag
    19801 tttaatcata taaacctcct tgttttcaat acatctagta tagcacaaaa tgagaaagga
    19861 atgattgaaa tactaaactc tgttctatat gttaaaataa attaggtgac gaatgaaata
    19921 tagaagtgtt gcaaaaatga caatgtccat tatgtgttaa gaaagtctaa cattgctagg
    19981 ggatacaaaa catggagtat gagccaggta aacaaaggta aggactgtct atgaaagatg
    20041 ttataaaaaa taattcagat ttcaagatac cgtttttcga tcctctggaa tgaatagcat
    20101 tcatgcttaa agaatagaga caatggaaat atcggttata gaccggtgtt ttttggtata
    20161 attaatagaa ggatagaata ggagcatgat atgaagatta gtgtgaagaa agaggcgggg
    20221 cactacc
//
LOCUS       DASFRC010000019        20076 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.019, whole genome shotgun sequence.
ACCESSION   DASFRC010000019 DASFRC010000000
VERSION     DASFRC010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 20076)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20076)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20076
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.019"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(76..1248)
                     /locus_tag="U1087_000511"
     CDS             complement(76..1248)
                     /locus_tag="U1087_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl/decaprenyl-phosphate
                     alpha-N-acetylglucosaminyl 1-phosphate transferase"
                     /protein_id="HEM4755023.1"
                     /translation="MIPFALKYIMVIITTMVISAIATPLVRFMSLKVGAVDNPNARRI
                     NKVPMPSAGGLAIFVAFTISVLGFLPGIVTRVNYHGTYLHYIWPLVLASSIIVLTGFI
                     DDVKELKPAPKMFGILAAATIIWIFTEFRFDSFKIPFGGPFLQFPVWLSFLLTVLWIV
                     SITNAVNLIDGLDGLVSGVSIISLTTMGIVSYFFLNDSNIFLTLTIFVLVAAIVGFLP
                     YNYNPAIIYLGDTGALFIGFMIGVLSLQGLKNSTAVAVVTPMIILGVPITDTVVAIIR
                     RKLSGQKIYEADKMHLHHRLLSLGLTHRGTVLVIYAISFLFSLTSLLLNVSSRIGGIL
                     LLVTMGLGIEILCELIGIFGINRTPLLNLLRFIGNSSYRQEKIAKYKKCCEEKKRK"
     gene            complement(1245..1967)
                     /gene="mecA"
                     /locus_tag="U1087_000512"
     CDS             complement(1245..1967)
                     /gene="mecA"
                     /locus_tag="U1087_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adaptor protein MecA"
                     /protein_id="HEM4755024.1"
                     /translation="MKVKQISDSTLKITIKLDDLEERGMELSDFLIPQEKTEEFFYTV
                     LDELDLPMTFRESGMLSFRVTPKPDRVDIFVTKSDLDQSLNFDEFTDFSELGDVASMT
                     PDEFFKSLEQTVREKSTPDATAVRHLEEVEQEEEADEEEQERYIYYILEFPTIEDLFT
                     FVGTVDYPVEESELYKMDGHYYLTVLINVENRSKQYPGYILSRMLEFTNDTKLTRPAL
                     QEHGTLMLPLAAIEELRKVPTV"
     gene            complement(2095..2931)
                     /locus_tag="U1087_000513"
     CDS             complement(2095..2931)
                     /locus_tag="U1087_000513"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HEM4755025.1"
                     /translation="MLLELLKAIFLGIIEGVTEWLPVSSTGHLILVQEFVKLNQSKNF
                     LEMFNIVIQLGAILAVMTIYFKKLNPFQPGKTKRDIQLTWQLWAKVVIACIPSILIAV
                     PLDNWFEAHFNFMVPIAIALIVYGIAFIWIENRNSGVEPQVTDLAKMSYKTALLIGCF
                     QVLSIVPGTSRSGATILGAIILGTSRSVAADFTFFLGIPTMFGYSGLKAVKYFLDGNS
                     LNMEQVWILLVASVTAYLVSLVVIRFLTDFVKKHDFTVFGYYRIILGAILLVYAFITF
                     LF"
     gene            3058..4623
                     /locus_tag="U1087_000514"
     CDS             3058..4623
                     /locus_tag="U1087_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding
                     protein/permease"
                     /protein_id="HEM4755026.1"
                     /translation="MKRKLSIFLLTLIAVFSVTTGVRADEYLRVGMEAAYAPFNWTQE
                     DDSNGAVPIEGTNQFANGYDVQVAKKIAASMDKELLVVKTKWEGLVPALTSGKIDMII
                     AGMSPTEERKKEIAFSDSYYTSIPTLVVRSDSQYANATSLADFAGAKITAQQGVYLYD
                     LIDQIEGANKQTAMGDFSQIRQALESGIIDAYVSERPEGRTAEAANKAFKMVELADSF
                     ETNAEDVTIAVGMRKDDERIAQVNEVLATISEEEQIALMDDMIENQPVEEASEGETPS
                     FFAQVWNIVVNNWQQLLRGTGMTLLISILGTIIGTAIGLLIGVFRTAPKAANKALAIG
                     QKVLGWIINIYIEIFRGTPMIVQSMVIYYGTAQAFGLNLDRTLAAIFIVSINTGAYMS
                     EIVRGGIFAVDKGQFEAATALGFTHNQTMRKIVLPQVIRNILPATGNEFVINIKDTSV
                     LNVISVVELYFSGNTVATQTYQYFQTFTVIAIIYFILTFTVTRILRTVEKHFDTDTYT
                     TGANQMQVEVPHD"
     gene            4616..5359
                     /locus_tag="U1087_000515"
     CDS             4616..5359
                     /locus_tag="U1087_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002886432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM4755027.1"
                     /translation="MTKNVILEINNLKKSYGQNQVLKDISISVEKGEVISIIGSSGSG
                     KSTFLRSINLLETPTEGQILYHGQDVLAKGYDLTTYREKLGMVFQSFNLFNNLNVLEN
                     AIVAQTTVLKRDRAEAEKIAKENLNKVGMTEQYWQAKPSQLSGGQKQRVAIARALSVD
                     PEVILFDEPTSALDPEMVGEVLKTMQDLAKSGLTMLIVTHEMEFARDVSDRVIFMDKG
                     VIAEEGSPQQIFENPQEERTREFLQRFLG"
     gene            complement(5486..5695)
                     /locus_tag="U1087_000516"
     CDS             complement(5486..5695)
                     /locus_tag="U1087_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755028.1"
                     /translation="MTSYEKVAAVVGWVREKKITGYRISKETNAREMSVIALAQGRAK
                     IDNISFATALGLIDFYDKNHKKFEN"
     gene            complement(5781..6683)
                     /locus_tag="U1087_000517"
     CDS             complement(5781..6683)
                     /locus_tag="U1087_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HEM4755029.1"
                     /translation="MVLGPIVFIGGFLFFVLIALILIASGLYVVKQQTVAIIERFGKY
                     QKTSTSGINFKIPFGVDVIAARIQLRMLQSEIVVETKTQDNVFVTMNVATQYRVNENN
                     VTDAYYKLMHPEAQIKSYIEDALRSSVPKLTLDELFEKKDEIALEVQKQVAEEMSTYG
                     YVIVKTLITKVEPDAEVKQSMNEINAAQRKRVAAQELAEADKIKIVTAAEAEAEKDRL
                     HGVGIAQQRKAIVDGLADSIRELKESNVSLSEEQIMSILLTNQYLDTLNNFAQGGNQT
                     IFLPGNPEGVEDIRTQILSSLRAK"
     gene            complement(6693..7943)
                     /gene="ilvA"
                     /locus_tag="U1087_000518"
     CDS             complement(6693..7943)
                     /gene="ilvA"
                     /locus_tag="U1087_000518"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019322143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase IlvA"
                     /protein_id="HEM4755030.1"
                     /translation="MITAKNVEQAYSVLKRVVVRTPLDYSRYLSEKYGATIYLKRENE
                     QRVRSFKIRGAYYAISQLTDDEKSRGVVCASAGNHAQGVAYTCQEMQIPATIFMPITT
                     PQQKIGQVKFFGGDYVEIRLVGDTFDESAKAAQDYTQESGKTFIDPFDDENVQAGQGT
                     VAYEILEEAEEQTISFDQILVPIGGGGLVAGVSAYLKEHAPEIKIVGVEASGARSMKA
                     AFDKGRPVKLDQIDKFADGIAVQKVGKSTYEVARKYVDRLIGVDEGWISGTILDLYSK
                     LGIVAEPAGAATIAALEVVKDQIKGQTICCIISGGNNDINRMPEMEERALIYEGIKHY
                     FVVNFPQRPGALREFVNDILGPNDDITRFEYIKRANKGTGPVLIGIALGDKTDYTQFI
                     SRLEEFDPQYINLHENDSLYKMLV"
     gene            complement(8238..9260)
                     /gene="ilvC"
                     /locus_tag="U1087_000519"
     CDS             complement(8238..9260)
                     /gene="ilvC"
                     /locus_tag="U1087_000519"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006145054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HEM4755031.1"
                     /translation="MTVTMQYEKDVTVAALDGKRIAVIGYGSQGHAHAQNLRDTGHDV
                     IIGVRAGKSFDKAKEDGFETFEVAEAAKQADVIMILAPDEIQADLYNDEIAPNLEAGN
                     ALGFAHGFNVHFEFIKVPADVDVFMCAPKGPGHLVRRTFEEGFGVPALYAVYQDATGN
                     AKHIAMDWAKGVGSARVGLLETTFKEETEEDLFGEQAVLCGGLTALMQAGFEVLTEAG
                     YAPELAYFEVLHEMKLIVDLVYEGGFKKMRQSISNTAEFGDYVSGPRVITDQVKENMK
                     AVLADIQSGKFANDFVNDYKAGRPRMEAYRKEAENLEIEKVGAELRKAMPFVGRNDDD
                     AFKIYN"
     gene            complement(9401..9877)
                     /gene="ilvN"
                     /locus_tag="U1087_000520"
     CDS             complement(9401..9877)
                     /gene="ilvN"
                     /locus_tag="U1087_000520"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002927678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HEM4755032.1"
                     /translation="MRRMLTAKLRNSSGVLNRFTGVLSRRQINIESISVGPTEVDGIS
                     RVTVIVDVASHDEVEQIIKQLNRLIDVVRVRDLTDIPHLEREVILVKISAPPTKRAEI
                     LAIIQPFRANVVDVAPHSITIQMTGDGDKIDALLRVIQPYGIKNIARTGATGFSRD"
     gene            complement(9870..11573)
                     /locus_tag="U1087_000521"
     CDS             complement(9870..11573)
                     /locus_tag="U1087_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019803125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HEM4755033.1"
                     /translation="MQEIQLDQPRSGSYLILDTLHQLGVDLVFGYPGGAVLPLYDAIY
                     QYEGIQHILARHEQGAVHEAEGYAKSSGKVGVAIVTSGPGATNAITGIADAMGDSVPL
                     LVFTGQVATRGIGKDAFQEADVLGMTMPITKYNYQIRDTADIPRVITEALHIATTGRP
                     GPVVIDVPKDIQERVVDFYHDPTVQLPSYQPTVEPNGLQVKKILKQLSQAQKPVILAG
                     GGVNYADANKELVAFAERYRIPVVSTLLGLGAMPIEHELSLAMGGMHGSYAANMAMDQ
                     ADYIINIGARFDDRLTGNPTTYAPNATVAHIDIDPAEIGKVVKTAIPVVGDAKATLKA
                     LLALETVETGYADWTAQVLENKRRAPFWYDEDEKVIKPQAAIELIGQLTQGDAIVVTD
                     VGQHQMWAAQFYPYKHARQLVTSGGMGTMGFGIPAAIGAKLANPDKEVIIFVGDGGFQ
                     MTNQELAILNGYGVPIKVVLINNHSLGMVRQWQESFYEKRRSQSVFDDEPNFQLLAEA
                     YGISHYSFDNPATLSEDMKVILEDKPMLIEVHISNREHVQPMVPAGKSNAEMLGVKFN
                     A"
     gene            11799..12851
                     /locus_tag="U1087_000522"
     CDS             11799..12851
                     /locus_tag="U1087_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glycosyltransferase family 2/GtrA
                     family protein"
                     /protein_id="HEM4755034.1"
                     /translation="MYYVAIPAYQPDEKLIQLLEIMKSRLNCQVIVVDDGSTGASKNI
                     LEIAKTYAIVLHHDVNKGKGQALRTAFSFIQDLRKPGVVVTADADGQHAVNDIDRIAR
                     AAMNLPSRLILGVRQFTKDIPFRSRFGNKLTRVLFRLQTGVNVSDTQTGLRGFHTDLI
                     PFMLDIEGDRYEYEMNMLTQASQRYKITEVPIQTIYIDDNASSHFRPIKDGLLIYKNL
                     FKFALASFGGFLVDYGVYALALLLLTSLPTALRLLVANTIARICSATCNFALNKKLVF
                     NNEESIAQTGTGYFTLALVLFLCDTALLYLFHQILGLNLYIVKLAVGIFLFLASWFVQ
                     KNIIFKERKSFSHEIA"
     gene            12838..13773
                     /locus_tag="U1087_000523"
     CDS             12838..13773
                     /locus_tag="U1087_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002918105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiester glycosidase family protein"
                     /protein_id="HEM4755035.1"
                     /translation="MKLLKKPFAYASIFGMLLTGGFTYSMLKTFVLSEAITTVAASNA
                     TANSQNTATSSSSTAATTATNVSTTDTSYTDDNIQINLETITTNNTTVYVADIQVSSP
                     EYLKTALAQNTYGTNVTAKTSETAAANNAILAVNGDYYGANSAGYVIKNGVLYRDTVR
                     DNAAYGDLAIYADGSFEVIYENEITAQELIDKGVVNLLAFGPSLVENGEIVADTSTEV
                     GRAMSSNPRSAIGIIDENHYIIVVADGRTSESQGLSLYQMAEVMKQYGAQTAYNLDGG
                     GSSTLYFNGQVINNPTTNGNTISERAVSDIIYIGY"
     gene            13748..14164
                     /locus_tag="U1087_000524"
     CDS             13748..14164
                     /locus_tag="U1087_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755036.1"
                     /translation="MTLSTSVTNSTTRVSRTFISYLAITAFLFIFSRIYESLSYGEVS
                     IFMHYMFCVTLIGGAVLLGLLQLMPTLSRLSYNLWNSGVATITAGCLLRGIINLSGRS
                     TTLDQPYWYIGAGFLVLSLVGLFINPSANNYRKTTT"
     gene            14322..16037
                     /gene="ilvD"
                     /locus_tag="U1087_000525"
     CDS             14322..16037
                     /gene="ilvD"
                     /locus_tag="U1087_000525"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEM4755037.1"
                     /translation="MTEKETLKNLRHRSSVYDSMVKSPNRAMLRATGMTDDSFEKPIV
                     GVISTWAENTPCNIHLHDFGKLAKEGVKEAGAWPVQYGTITVADGIAMGTPGMRFSLT
                     SRDIIADSIEAAMGGHNVDAFVAIGGCDKNMPGSMIAIANMDIPAIFAYGGTIAPGNL
                     NGKDIDLVSVFEGIGKWNNGDLTAEEVRQIECNACPGPGGCGGMYTANTMATAIEVMG
                     MSIPGSSSHPAESPEKKADIEEAGRAVVRMLELGIKPSDIMTREAFEDAITVTMALGG
                     STNATLHLLAIAHAANVDLTLEDFNDFQERVPHLADLKPSGKYVFQDLYNVGGVPAVM
                     KYLLKNGFLHGDRITCTGKTVAENLENFADLTPGQDVIMPLENPKRADGPLIILKGNL
                     APEGAVAKVSGVKVRNHTGPAKVFDSEEEAIEAVLTDEIVDGDVVVVRYVGPKGGPGM
                     PEMLSLSSMIVGKGQGDKVALLTDGRFSGGTYGLVVGHIAPEAQDGGPIAYLRTGDLV
                     TVDQDTKEITIHVSDQEIEERKKTTVIPPLYSRGVLGKYAHTVSSASKGAVTDFWRPE
                     QTGKK"
     gene            16070..17350
                     /locus_tag="U1087_000526"
     CDS             16070..17350
                     /locus_tag="U1087_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase family 8"
                     /protein_id="HEM4755038.1"
                     /translation="MVKLQDSTSPLTSNKQPHKEEKRREEKRAVVLAGDYGYIRQIET
                     TLKSLIFHNSHLKIYIFNQDIPKEWFIHYKSLLNQIGSDLIDIKLLDVPLNRDWYAGF
                     SHITYMAFARYFIPQFVSEDKVLYLDSDIIITDSLDNLFTIDISQHYLAVVRATFGYG
                     LGFNSGMMLINNKRWKAENITTKLVEKTEQEKDSIQEGDQTILNLVLGHEAIWLDDTY
                     NFQIGFDQGAFSYRHQHLFELSLDPLPKILHYISGDKPWNTYSSGRLRDVWWHYHFLA
                     WTEILKKWENIQTMIPKKHCKGKLLIITNTHWLQNIEYLVKQLPDYEFHITAFTDVAN
                     NLKQLSSQENVFIYPHIIAYVLVDMIKNCDIYLDINHGSKLDELLEHVIVNQKPVLSF
                     DNIAAPIFENYSHRQVFSYHLPENFVTAVRLLSE"
     gene            17364..17750
                     /locus_tag="U1087_000527"
     CDS             17364..17750
                     /locus_tag="U1087_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755039.1"
                     /translation="MKLNVELSRFRVKEGKTAQVDEWMAFLNEHMEDTLLTLEGEKMY
                     VETIFREVLDGREYLYWYSVQAEGGIEVEDSESYIDKKHLEYWEKCIDPSYGMVDLDP
                     QVIMIPKPVYETMEELDRQYDETFKK"
     gene            complement(17766..18113)
                     /locus_tag="U1087_000528"
     CDS             complement(17766..18113)
                     /locus_tag="U1087_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF59 domain-containing protein"
                     /protein_id="HEM4755040.1"
                     /translation="MREDIQINERALVLSEQLVEVLESIYDPEIELDIYNLGLVYEIN
                     IDEAGFCKVIMTFTDSGCSCADTMPGELVTALKTIDGIEDAQVEIVWSPAWKMTRISR
                     LGRMTLGISPKRK"
     gene            complement(18204..18653)
                     /locus_tag="U1087_000529"
     CDS             complement(18204..18653)
                     /locus_tag="U1087_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEM4755041.1"
                     /translation="MELKDIMHILEDMKVGVFATLDEYGNPHARHAHITAANEEGIFF
                     MTSPETHFYDQLMGDQRVAMTAISEEGYLIQVVRVEGTARPVENDYLKTVFADNPYYQ
                     HIYKDESSDTMQVFQIYAGHGFYHSLTQGHKYIFSIGQGENSEVRTL"
     gene            complement(19181..19972)
                     /locus_tag="U1087_000530"
     CDS             complement(19181..19972)
                     /locus_tag="U1087_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014623538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toll/interleukin-1 receptor domain-containing
                     protein"
                     /protein_id="HEM4755042.1"
                     /translation="MIFISYNHGDQDVVDMIAKRLEIEFGRDNIFYDKWSMQPGDSII
                     GKMDEGLEKVTTFFYFLSSNSLNSNMVKKEWQAALTKSLYEGVKFVPIKVSDCKIPAI
                     LTDVYYIDLFSQGLDNTIEQMRSVISGSSRYTPLPDIENLQVSIKYISTNEVEFKIFT
                     THFVESDASFGFVCKNPIDSYEVRPLTETIYRSMQGETYKKLSDGREKAFKMQIGILQ
                     RSITPSQPFIGRLVSKQLPLQLEGILHIKSFEPVNFRELKINIEQ"
BASE COUNT         6047 a         4493 c         3717 g         5819 t
ORIGIN      
        1 agtattaatt aaccatatcc actatattat atcaaaaaaa gagcctgacg gctcttatct
       61 tgtttagaaa aattcttatt ttcttttttt ctcttcacag cactttttat actttgcgat
      121 tttttcttga cggtaactac tattaccaat aaaccgaaga agattgagca atggagttct
      181 attgatacca aagatgccaa tcaattcaca gagaatctca attcccagtc ccatggtcac
      241 caataggaga atccccccta ttcgactcga aacattgagc aaaagagagg tcagggagaa
      301 taagaaagag atggcgtaaa tcaccaatac tgtgccgcga tgagtaagtc ccagagagag
      361 caagcgatga tgcagatgca tcttatctgc ttcatagatt ttttgcccag acaattttcg
      421 acgaatgatg gctactacag tatccgtaat aggcactcca agaataatca tcggagtaac
      481 cactgcaaca gctgtcgaat ttttcagtcc ttgaagggac aagactccaa tcataaaccc
      541 gatgaagagg gctcctgtat cgccaagata aatgatggcg ggattatagt tatacggtaa
      601 aaaaccaaca atcgccgcaa ccaaaacaaa gatggttaag gttaaaaaaa tattgctatc
      661 attcaaaaag aaataagaca caattcccat cgttgtcagg gaaataatcg atactcccga
      721 aaccagacca tccagaccat caatcaagtt gactgcattc gtaatagaaa caatccaaag
      781 gaccgttaat agaaaagaga gccagacagg aaattgaagg aaaggtcctc caaaaggaat
      841 cttaaagcta tcaaaacgaa attccgtaaa aatccaaatg atcgtcgctg ccgctagaat
      901 accaaacatt ttaggtgcag gctttagctc cttgacatca tcaatgaatc ccgtaagaac
      961 gataatgctg gatgctagga ccaggggcca gatataatgc aagtaagtgc catggtaatt
     1021 gacacgggta acaattcctg gtaaaaaccc taggacagaa atggtaaatg ccacaaagat
     1081 agccagccct cccgctgaag gcatgggcac cttatttatc cgccgtgcat tgggattatc
     1141 gactgctcca accttcaggg acataaaacg aaccaaggga gtcgcaatgg ctgatatgac
     1201 catggttgta ataatgacca ttatgtattt tagagcaaaa ggaatcatac tgtcggaacc
     1261 ttcctaagct cctcgattgc cgcaagcgga agcatcaaag ttccgtgttc ttgtaaagca
     1321 ggtctggtca acttagtatc attggtaaat tccaacattc gtgagagaat gtagcctgga
     1381 tactgcttgg aacgattttc tacattgata agaacggtca agtagtagtg accatccatt
     1441 ttatataatt ccgattcttc tactggataa tcaaccgtac caacaaaagt aaacagatcc
     1501 tctatcgttg gaaattccaa aatgtagtaa atatagcgct cctgctcctc ttcatctgct
     1561 tcttcctctt gctctacctc ttccaaatga cgaacggctg ttgcatccgg tgtgcttttc
     1621 tcacgaacgg tttgctccaa actcttgaaa aactcatctg gagtcatact tgcaacatca
     1681 ccaagttccg aaaaatctgt aaattcatcg aaattcaagc tctgatccaa atcagatttg
     1741 gtaacaaaga tgtctacccg atctggcttc ggagtcacac gaaaactcag cataccactt
     1801 tctcgaaaag tcattggtaa atccaattca tccaaaacag tatagaagaa ctcctctgtc
     1861 ttttcttgcg gaatgagaaa gtccgaaagt tccattcctc tctcttccaa atcatctaat
     1921 tttatagtga ttttcaaggt tgaatcacta atttgcttta ctttcataac tacctcattc
     1981 attgattcat caatttctta aaattgattg atcattttca atactcatac atatcttcca
     2041 ccattatact aaaaccaagc tctaaagaca aaagaaaagc aggtctccct gctcttaaaa
     2101 taaaaatgtg ataaaggcat aaaccaataa aatcgcccct aaaatgatgc ggtagtaacc
     2161 aaaaaccgtg aaatcatgtt ttttaacaaa gtctgtcaag aaacgaataa caactaagga
     2221 taccaagtaa gccgtcacac tagcgactag caagatccat acctgctcca tattcaggct
     2281 attgccatct aagaaatatt taacagcctt caagccacta taaccaaaca tggttggaat
     2341 cccaagaaag aaggtaaaat ctgccgccac agatcggctg gtccccaaaa taatcgctcc
     2401 cagaatggtc gcacctgatc gactagtccc cggaacgatg cttaagacct ggaaacaccc
     2461 aatcaacaag gcggttttat aagacatttt cgctaagtcc gtcacctgtg gctctacacc
     2521 actgttacgg ttctcaatcc aaataaaggc aataccgtag acaatcaaag caatcgcaat
     2581 cggtaccata aaattgaagt gcgcttcaaa ccaattatcc aacgggactg caattaggat
     2641 ggacggaata caggcaatga caaccttggc ccataattgc caagtcaatt gaatatcacg
     2701 cttggttttt ccaggctgaa atggattcaa ttttttaaag taaatggtca taactgctag
     2761 aattgctcct agctgaatga caatattaaa catttctagg aagttcttgc tttggtttaa
     2821 tttcacgaac tcttgaacca aaattaaatg ccccgttgaa gaaactggca accattccgt
     2881 taccccttca atgattccta aaaaaatggc tttcaacaat tccaatagca taaaaagctc
     2941 cttttcatca attctctaca ttatatcata aaaaaactcc ctattcatag tacaaggata
     3001 ttgaaatttg tcagaatttt taataaaatg gtgtaatagc attttaaagg agacattatg
     3061 aaacgtaaac tcagtatatt tctgctgacc ctaatcgctg ttttttctgt aacaacaggg
     3121 gttcgggcag acgaatacct gcgggtcggt atggaagctg cctatgcacc atttaactgg
     3181 acccaagaag atgatagcaa cggtgccgtt cctattgagg gaaccaatca atttgccaac
     3241 ggatatgatg ttcaggttgc aaaaaaaatc gctgcttcca tggacaaaga actcttggtt
     3301 gttaaaacca agtgggaagg cttggtccct gctcttacat ctggtaaaat cgatatgatt
     3361 atcgccggta tgagcccgac agaagagcgc aagaaagaaa tcgccttctc agatagctac
     3421 tacacttcaa ttcctaccct ggttgttcgt tctgatagtc agtacgcaaa cgcaaccagc
     3481 ttggcagatt ttgctggcgc aaaaatcact gcccagcaag gggtttacct ctatgatttg
     3541 attgaccaaa ttgaaggggc taacaaacag actgccatgg gagatttctc acaaatccgt
     3601 caagctttag aatcaggcat tatagacgcc tatgtttctg aacgtccaga aggtcgtaca
     3661 gcagaagctg caaataaagc tttcaaaatg gttgaattgg cagacagttt tgaaaccaat
     3721 gccgaagacg tgaccattgc tgtcggtatg cgcaaagatg acgagcgtat cgctcaggtc
     3781 aacgaagtct tagcaactat ttcagaagaa gagcaaatcg cacttatgga tgatatgatt
     3841 gaaaaccagc ccgttgaaga agccagcgag ggtgaaacac ctagtttctt cgcccaagtt
     3901 tggaatattg ttgttaacaa ctggcaacaa cttctgcgtg gaactgggat gacattactc
     3961 atttccatcc tcggtacaat tatcggtact gctatcggtc tcctcatcgg tgtcttccgt
     4021 acagctccaa aagcagcaaa caaggcactt gctattggtc aaaaagtact cggttggatt
     4081 atcaatatct acatcgaaat tttccgtggt acgccgatga ttgtacaatc catggttatt
     4141 tactatggta ccgcccaagc attcggactc aatcttgacc gcacacttgc cgctatcttc
     4201 attgtatcca tcaacacagg tgcctacatg agtgagattg tccgcggtgg tatctttgcc
     4261 gtcgataagg gccaatttga agctgctact gctctcggat ttacccataa tcagaccatg
     4321 cggaagattg tccttccaca ggttattcgt aacatcttac cagcgactgg taatgaattt
     4381 gtcatcaata tcaaagatac ttctgtattg aacgttatct cagttgttga actctatttc
     4441 tcaggaaata ctgtcgcaac ccaaacctat caatatttcc aaacctttac ggttattgct
     4501 attatctact tcatcctaac ctttactgtg acacgtatct tacgcacagt tgaaaagcat
     4561 tttgatacag atacatacac aacaggtgca aaccaaatgc aagtcgaggt gccacatgac
     4621 taaaaatgta attcttgaaa tcaataatct aaagaaatca tacggacaaa atcaagtcct
     4681 caaagacatc tctattagcg ttgaaaaggg cgaggttatc tcaatcatcg gttcatctgg
     4741 ttcgggaaaa tcaaccttcc tccgatctat caaccttttg gaaacaccaa cagaaggaca
     4801 gattctatac cacggacaag atgttttggc taaaggatat gacttgacga cttaccgtga
     4861 aaaactaggc atggtattcc aatccttcaa ccttttcaac aatctaaatg tattggaaaa
     4921 tgccattgta gcacaaacta cggtactgaa acgagatcga gctgaggcag agaaaatcgc
     4981 caaagaaaat ctcaacaagg ttggcatgac cgaacagtac tggcaagcca aaccaagtca
     5041 actctctggt ggacagaaac aacgcgtggc cattgcacgt gccctatctg ttgacccaga
     5101 agttatcctc tttgatgagc cgacttctgc tctcgatcca gagatggtcg gggaagttct
     5161 caaaaccatg caagatttgg caaaatcagg attgacgatg cttatcgtaa ctcacgaaat
     5221 ggaatttgcc cgtgacgtat ctgaccgcgt tatctttatg gataagggtg tcatcgccga
     5281 agaaggcagc cctcaacaaa tctttgaaaa tccacaggaa gaacgcacac gtgaattcct
     5341 tcagcgtttt cttggataaa ctcaatctgt tccatagaag actattactt accagtttca
     5401 aagctggtaa gtttttttag accaaaaaag aggaattcgc agaattcccc tcctttttgg
     5461 acatctctaa atgaaaccat ttagattagt tttcaaattt cttgtggttt ttgtcgtaaa
     5521 aatcaatcaa acccaaggca gttgcaaatg aaatattgtc aatcttagcg cgaccttgtg
     5581 caagagcgat aactgacatt tcacgagcat ttgtttcctt actgatacgg taacctgtga
     5641 ttttcttttc acgaacccag ccgacaactg cggcaacttt ttcgtaacta gtcatgagaa
     5701 acccctttcc tttttattcg tgcaattaag tataatacag ttaaacctat tttgtcaagt
     5761 aaattgttcg gtttttacca tcattttgct ctaagagatg atagtatttg cgtccttatg
     5821 tcttcgaccc cctccggatt ccccggaagg aagatagttt gattacctcc ttgtgcaaaa
     5881 ttattgagag tatccaagta ttggttggtc agcaagatag acataatctg ctcttcagat
     5941 aggctaacat ttgattcttt cagttcacga atcgaatctg ccagtccgtc tacaatcgcc
     6001 ttacgttgtt gtgcaatacc tacaccatgc aagcgatcct tttcagcctc tgcttctgct
     6061 gctgtgacaa ttttaatctt gtcagcttct gccaattctt gggccgcaac ccgtttccgc
     6121 tgagctgcgt taatttcatt catagattgt ttaacctcgg cgtctggctc taccttggta
     6181 attaaggttt tgacaataac ataaccgtag gttgacattt cttctgctac ttgtttttgt
     6241 acctcaagtg caatctcatc ctttttctcg aagagctcat ccaaggtcaa tttaggcaca
     6301 gatgaacgca gggcatcttc aatataggac ttaatctgtg cttctgggtg catgagcttg
     6361 taataggcat ccgtcacatt attttcattt actcgatatt gagttgccac attcattgtg
     6421 acaaaaacgt tatcctgcgt cttggtttct accacaattt cactttgcaa catccgcaat
     6481 tgaatgcggg ctgcgatgac atcaactcca aatggtattt taaagttaat acctgaagta
     6541 gatgtttttt ggtatttccc aaagcgctca ataatagcga ccgtctgctg cttgacaacg
     6601 tatagccctg aagcaatcaa aatcaaagca atcagtacga agaacaagaa accgccaata
     6661 aaaacaattg gaccaagtac cataatgacc tcctaaacta gcattttata aagcgaatca
     6721 ttttcatgaa gattgatgta ctggggatca aactcttcca agcgagaaat aaactgcgta
     6781 taatctgttt tatctcctag ggcaataccg attagaaccg gccctgttcc cttattggca
     6841 cgtttgatat attcaaaacg agtaatatca tcatttggcc ctagaatatc atttacaaat
     6901 tcacgaagag cccctggacg ttgtggaaaa ttaacaacaa agtagtgttt aattccctcg
     6961 tagataagcg cacgttcctc catttccggc atcctgttga tgtcgttatt accaccagaa
     7021 atgatacaac aaatggtttg ccccttgatt tggtccttga ctacctcaag agctgcaatc
     7081 gttgctgctc ctgctggctc agcaacaata cccagcttag aatagaggtc taaaatagtc
     7141 ccagaaatcc atccttcatc cacaccaatc aggcgatcta cgtatttccg agccacttcg
     7201 taggtcgact taccgacttt ctgtaccgca ataccgtcag caaatttatc aatttggtct
     7261 aatttaaccg gacgaccttt atcaaaagcc gctttcattg accgtgcccc acttgcttca
     7321 acaccaacaa tcttaatttc aggtgcatgt tctttcagat aggccgaaac gcctgcaacc
     7381 agaccacctc ctcctatggg aactaaaatt tggtcaaaac taatggtttg ctcttccgct
     7441 tcttccaaga tttcataggc tactgttccc tgaccagcct gcacattttc atcatcgaat
     7501 gggtctataa atgttttccc actttcctga gtataatctt gtgccgcctt ggctgactca
     7561 tcaaaggtat cacctacgag ccgaatctct acgtagtctc ctccgaaaaa tttaacctgc
     7621 cctatttttt gttgcggagt tgtaatgggc ataaaaatcg tagcaggaat ttgcatttcc
     7681 tgacaggtgt aggccacacc ttgagcatgg ttcccggccg aagcacagac cactccgcgt
     7741 gacttctcat catctgtcaa ttgtgaaata gcataatagg ctcctcgaat tttaaaagag
     7801 cgaacacgct gttcattttc tctttttaaa taaatagttg caccatattt ttccgacaag
     7861 tatcgactat aatccaaggg ggtacgtact accacgcgct taagaacgga gtatgcttgt
     7921 tctacatttt ttgctgtaat catagttcca ttaatttctt tctatattta ttgtatcatt
     7981 attccctaga aaatcctagt atttatactt atattcaagc tactagcatg ttattcaaca
     8041 gaaaacgaat gtttaatttt gtaaagatct atttatgaac aaaatgggca aaagagctgg
     8101 aaaaaccagc tcttttattc attttcggag ataagggaaa aagggaatga catcccctca
     8161 tccgccaact caaaccttaa atgtattgcc atcactcaaa gtaaagctga ctatccccct
     8221 atctaccatg ttagtgttta attatagatt ttgaatgcgt cgtcatcatt gcgtccgaca
     8281 aatggcattg ctttgcggag ttctgcacct actttttcga tttcaagatt ctctgcttct
     8341 ttacgataag cttccatacg tggacggcct gctttatagt catttacaaa gtcatttgca
     8401 aatttaccag attgaatatc tgcaaggact gccttcatgt tttctttgac ttggtctgta
     8461 atcacgcgtg gacctgatac atagtcacca aattcagcag tgtttgagat agattggcgc
     8521 attttcttaa agccaccttc gtagacaagg tcaacgatga gtttcatctc gtggagaact
     8581 tcgaaataag ccaattctgg tgcatagcct gcttctgtca agacttcaaa accagcttgc
     8641 ataagagctg tcaaaccacc gcagagaaca gcttgctcac caaacaaatc ttcttctgtc
     8701 tcttctttga aagttgtttc caaaagacca acacgggctg aaccaacacc ttttgcccag
     8761 tccatcgcaa tatgttttgc attgccagtt gcatcttggt aaacagcata gagggctggt
     8821 actccaaaac cttcttcaaa ggtacggcgg accaagtgac ctggaccttt tggtgcacac
     8881 atgaagacat ccacatctgc tggtaccttg ataaattcaa agtgaacgtt gaaaccatga
     8941 gcaaaaccaa gggcattgcc cgcttccaag tttggagcga tttcgtcatt gtaaaggtct
     9001 gcttggattt cgtctggagc caagatcatg atgacatctg cttgttttgc tgcttctgct
     9061 acttcaaaag tttcaaaacc gtcttctttt gccttgtcaa atgacttacc tgcacgcaca
     9121 ccgatgatga catcgtgccc tgtatcacgc aagttttgag catgggcatg accttgtgaa
     9181 ccataaccga taacggcgat acgtttaccg tcaagtgctg ctactgttac atctttttca
     9241 tattgcattg ttactgtcat aattttttct cttttctatt tttatttgta gttttggatg
     9301 ttcaaagaaa atgaaggcta gaccaagcga tgtaggcgaa gatagaacta acgttcatca
     9361 agccaaatca acgcaggata ggttttatta tcgaaaagga ttagtctcta ctaaagccag
     9421 tcgcacccgt tcttgcgata ttcttaatgc cataaggctg aatcacccgc aggagggcgt
     9481 caatcttatc tccatcacct gtcatttgaa tggtaatgga gtgcggtgcc acatcaacaa
     9541 catttgctct aaagggttgg ataatcgcta aaatttctgc tcgttttgtt ggcggagctg
     9601 aaattttaac aagaatcacc tcacgctcta agtggggaat gtccgtcaaa tcacggacac
     9661 ggaccacatc aatcaagcgg ttcagctgtt tgatgatttg ttcgacctca tcgtgactgg
     9721 ccacgtctac aatcaccgtc acacgtgaga tgccatctac ttctgttggg ccgactgaga
     9781 tggactcaat attgatttgg cgacgagata ggacacctgt aaaacgattc agaacaccag
     9841 atgaatttcg caatttagct gttaacattc tacgcattga acttcacccc caacatttct
     9901 gcattgctct tacctgctgg caccatcggt tgaacatgtt cacgattaga aatatgaacc
     9961 tctatgagca ttggtttatc ttctaagata actttcatat cttcacttag agtcgctgga
    10021 ttgtcaaaac tataatgact aattccgtag gcctctgcca acaattggaa attcggttca
    10081 tcgtcaaaga cagattggct acgacgcttt tcatagaagg attcctgcca ttgacgaacc
    10141 attccaagag agtggttatt gatcaataca accttaatcg gtacaccata gccattcaaa
    10201 atagccaatt cttggttggt catttggaag ccgccatcac cgacaaagat gattacttct
    10261 ttatctggat tggctaattt ggcaccgata gctgcaggaa taccaaagcc catggttccc
    10321 atgccaccag atgttacaag ttgacgtgca tgtttgtagg ggtagaattg agcggcccac
    10381 atttgatgct gaccaacatc tgtcacgaca atggcatccc cttgcgtcaa ctgaccaatt
    10441 aattcaattg ccgcctgtgg cttaataacc ttttcatctt catcatacca aaatggcgcc
    10501 cgacgtttgt tttccaatac ttgtgccgtc caatcagcat agcctgtttc gactgtttct
    10561 aaagcaagca gagctttcaa ggttgcctta gcatcgccca ctactggaat agccgttttg
    10621 acaactttac caatttctgc gggatcaata tcaatatgtg ctaccgtcgc atttggcgca
    10681 taggttgttg gatttcctgt taggcggtca tcgaatcgcg ctccaatatt gataatgtaa
    10741 tcagcctgat ccatagccat attagcagcg tatgaaccgt gcatcccccc catagccaag
    10801 gataattcat gctcaatggg cattgcacct aatccaagga gggttgaaac tactggaata
    10861 cgatagcgct ctgcaaaggc aactaattct ttattggcat ctgcataatt gacaccacca
    10921 ccagccaata taactggttt ttgagcttgg ctaagctgtt tcaaaatttt cttaacctgc
    10981 aaaccatttg gttcaacagt cggttgataa cttggaagtt gaacagttgg atcgtgataa
    11041 aaatcaacta ctctctcttg aatatctttt ggaacatcaa tgacaaccgg acctggacga
    11101 ccagttgttg caatatgaag cgcctctgta atcacacgag gaatatctgc cgtatctcga
    11161 atctgataat tatatttcgt aatgggcatg gtcatgccta aaacatctgc ctcttgaaag
    11221 gcatccttac cgatcccccg tgtagctact tgacctgtaa agaccaacaa agggacgcta
    11281 tctcccattg catccgcaat gcctgtgatg gcattggtag cacctggccc agaggttaca
    11341 atggctacgc ccacctttcc tgatgattta gcgtatcctt cggcctcgtg gaccgctcct
    11401 tgttcatgac gagccaaaat atgttggatt ccctcatatt gatagatagc atcatataga
    11461 ggcaaaactg ccccaccagg ataaccaaaa acaaggtcta ctcctagctg atgcagggtg
    11521 tccaaaatga gataggaccc cgaacgcggt tggtctagtt gaatttcttg cacgaatatt
    11581 cctcctctct gcaaatttgt tatctactat attatcacaa ggaagtagaa tgtcaagaaa
    11641 ttttctgaaa attcctacat ttgttcgttt tcttaacgat ttcctaacat tttcttaagt
    11701 aaaacttaag taaatccctt gactggcttg gtttcagctt gcttttagaa aacttcagta
    11761 tagtagtccc aacaagaaaa ataaatgagg tttaggatat gtattatgta gcgataccgg
    11821 cttaccagcc agatgaaaaa ttaatccaac tattagaaat aatgaaaagc aggctaaatt
    11881 gtcaggtcat cgttgtggat gatggtagta ctggcgcatc caaaaatatt cttgaaatcg
    11941 ccaaaaccta tgccattgtt ctccaccacg atgtcaacaa aggaaaaggc caagccttgc
    12001 ggactgcctt tagtttcatc caagatttga gaaagcctgg tgtcgttgtt accgctgatg
    12061 cagatggtca acacgctgta aatgatattg accgcatcgc ccgtgcagct atgaatctgc
    12121 caagtcgcct catccttggc gtccgtcaat ttactaagga cattcccttt cggagtcgtt
    12181 ttggtaacaa actaaccaga gtattgttta gattgcaaac tggtgtcaat gtgtccgata
    12241 cgcaaacagg cttgcgtggt ttccatactg acttaattcc attcatgtta gatattgaag
    12301 gcgaccgcta tgagtacgag atgaacatgt taactcaggc aagtcaacgc tataaaatta
    12361 cggaagttcc aattcaaact atttatatcg atgataatgc cagttcgcat tttcgtccca
    12421 taaaagatgg actgctcatt tacaagaatc tcttcaaatt tgccctggca tcttttggtg
    12481 gatttctagt tgactacgga gtgtatgcac ttgccttatt actactcact agcttaccaa
    12541 ctgctctacg cttattggtc gcaaacacga ttgctcgcat ttgtagcgct acctgtaatt
    12601 ttgcacttaa taagaaatta gtctttaaca atgaagagag catcgcacaa acaggcaccg
    12661 gctactttac actagccctt gtcctcttcc tttgcgatac ggccctcctc tatctcttcc
    12721 accaaattct aggactcaac ctctacattg tcaaacttgc agttggtatc ttccttttcc
    12781 tagcctcttg gtttgttcaa aagaatatta tttttaaaga aaggaaatca ttttcccatg
    12841 aaattgctta aaaaaccctt tgcctacgca tccatcttcg gaatgctttt gacaggaggc
    12901 tttacttact ccatgttaaa aaccttcgtg ctttccgagg ctatcacaac ggttgctgca
    12961 agtaatgcca cagccaatag ccagaacaca gctacttcat cgtcgtcaac tgccgcaacc
    13021 actgcaacga atgtctctac aacggatact agttacactg atgacaatat ccaaatcaac
    13081 ttagagacta tcactaccaa caacacaact gtttacgtcg cagatattca agtcagctca
    13141 cccgagtatt taaaaacagc acttgcacaa aacacttacg gtacaaacgt aacagctaaa
    13201 acctcagaga cagcggcagc aaacaatgct atcttagctg ttaacggtga ctactacgga
    13261 gccaactcgg ctggttatgt tattaagaat ggagttctgt atcgagacac cgttcgggac
    13321 aatgcagctt acggcgactt ggcaatctac gcagatggct catttgaggt catttatgaa
    13381 aatgagatta ccgcccaaga attgattgac aagggcgttg tcaacctctt agcatttggt
    13441 ccatcattgg tcgaaaacgg cgaaattgtc gccgatactt caacagaagt cggacgtgca
    13501 atgtcatcca atcctcgttc tgctatcgga attatcgatg aaaaccatta tatcatcgtc
    13561 gtggccgatg ggcgaacatc tgaaagtcaa ggactttctc tctatcaaat ggccgaggtt
    13621 atgaagcagt atggtgccca aacagcctat aaccttgacg gtggtggttc gtcaaccctc
    13681 tacttcaacg gccaagtcat caacaatcca acaacaaacg gaaatactat ctcagaaagg
    13741 gcggtgagtg acattatcta catcggttac taattcaact acaagagttt caagaacatt
    13801 tatctcctac ttagcaataa cagctttcct gtttattttc agtcgaatct atgaaagtct
    13861 cagctatggc gaagtttcaa tcttcatgca ttatatgttc tgtgtgaccc tgattggcgg
    13921 agctgtgtta ctcggtttgc tgcaacttat gcctactctt tcacgtctct cttataattt
    13981 gtggaattct ggcgttgcaa ctattacagc tggttgtctt ctccgaggca ttatcaacct
    14041 atctggacgt tcaactacct tagatcaacc ttattggtac atcggcgcag gattcttagt
    14101 tctatcttta gtaggtcttt tcatcaatcc atccgcaaac aattatcgaa aaacgaccac
    14161 ttaatctaca aattaattgc aagggcactt aacatcttag atgcctttta ctgtagaatg
    14221 aattattgaa aaattcggaa atttccaatt agttatcaaa tcttttatcg tttctttcat
    14281 atctatgata taatgggtga aataagatag ggagaagagt aatgaccgaa aaagaaacac
    14341 taaaaaacct ccgtcatcgt agctctgtct acgattcgat ggtcaaatca cctaaccgtg
    14401 ctatgttaag agcaactgga atgaccgatg atagttttga aaaaccgatt gttggggtta
    14461 tttcgacttg ggctgaaaat acaccctgta acatccacct tcacgacttt ggaaaattag
    14521 ccaaagaagg cgtcaaagag gcaggtgcct ggcctgtcca atacggtacc atcaccgttg
    14581 cagacggaat cgctatggga actcctggta tgcgcttctc actgacttct cgtgatatca
    14641 tagctgactc tattgaggca gctatgggag gtcacaacgt ggatgccttt gtcgcaatcg
    14701 gtggctgtga caaaaacatg cctggttcta tgattgctat cgccaatatg gatattcctg
    14761 ctatctttgc ctacggtgga accatcgcac caggtaacct aaatggtaaa gatattgact
    14821 tggtttctgt ctttgaagga atcggaaaat ggaacaacgg cgacttaacc gctgaagaag
    14881 ttcgtcaaat cgaatgcaat gcctgccctg gacctggtgg ttgtggtggt atgtacacgg
    14941 ccaataccat ggcaacagcc attgaagtca tgggcatgtc cattccagga tcttcttctc
    15001 accctgctga atctcctgag aaaaaagcgg atatcgaaga agctggtcgt gccgttgtcc
    15061 gcatgttaga actgggtatc aaaccatctg atattatgac tcgtgaagcc tttgaagatg
    15121 ctatcactgt taccatggca ctcggtggtt caaccaacgc tacccttcac cttctagcca
    15181 tcgctcatgc tgccaatgtc gacctcacac ttgaagactt caatgatttc caagaacgag
    15241 tacctcacct agctgacctc aaaccatctg gtaaatacgt attccaagac ctctataatg
    15301 tcggcggcgt ccctgcggtc atgaaatact tgctcaaaaa cggcttcctc catggtgacc
    15361 gcatcacctg tacaggtaaa accgttgctg aaaacttgga aaactttgca gacttgacac
    15421 caggacaaga tgtcattatg ccacttgaaa atccaaaacg tgcagatggc ccactcatca
    15481 tcctcaaagg taatctggct cctgaaggtg ccgttgcaaa agtttctggc gtgaaagtcc
    15541 gcaaccatac aggtccagcc aaggtctttg actcagaaga agaggcgatt gaagcagtct
    15601 tgactgacga aatcgtagat ggagatgtag tcgttgtccg ctatgttgga ccaaaaggtg
    15661 gtcctggtat gcctgaaatg ctatcacttt cttctatgat tgtcggaaaa ggccaaggtg
    15721 acaaggtagc ccttctaaca gacggtcgtt tctctggtgg tacctatgga ctggttgttg
    15781 gacacatcgc acctgaagct caggatggtg gaccaattgc ctaccttcgt actggagatt
    15841 tggtaaccgt tgatcaagat accaaagaaa tcaccataca cgtttctgac caagaaatcg
    15901 aggaacgcaa gaaaacaacg gttattccgc cactctactc acgtggagtc ctcggtaaat
    15961 atgcccatac agtgtcttct gcttctaaag gagccgttac cgacttctgg agaccggaac
    16021 aaactgggaa aaaataaaag aactcgtaag tccacaggga ggaaactata tggtcaaact
    16081 acaagattcg acctctcctc tgacttccaa taagcaaccg cataaggaag agaagagaag
    16141 agaagagaag agggctgtag ttctagcggg ggactatggt tatatccgtc aaatcgaaac
    16201 aacattgaaa tccttgattt ttcataatag tcatcttaag atttatattt ttaatcagga
    16261 tatccctaaa gaatggttta ttcattataa atcgttacta aatcaaattg gtagcgattt
    16321 aatcgatata aaattattag acgtccctct aaatagagac tggtatgctg gtttttcaca
    16381 tattacatac atggcctttg ctcgatattt tattcctcaa tttgtctccg aggacaaagt
    16441 attgtatcta gatagcgaca tcatcattac tgattcccta gacaacttat tcactattga
    16501 cattagccaa cactatctag ctgtcgttcg agcaacattt ggctacggac taggttttaa
    16561 ttccggtatg atgctcatta acaacaaacg ttggaaagcc gaaaatatta ctactaaatt
    16621 agtcgaaaaa acagaacagg aaaaggattc cattcaagaa ggtgaccaaa ctattttaaa
    16681 cttggtttta ggtcacgaag caatttggtt agatgatacc tataattttc aaatcggatt
    16741 tgatcaagga gccttttcct atcgccatca gcatctattt gaactcagct tagacccttt
    16801 gcctaaaatt ctgcactata tctccggaga caaaccttgg aatacttatt cttctggacg
    16861 tcttcgtgat gtatggtggc actatcactt cctagcttgg acagagatcc tgaaaaaatg
    16921 ggaaaatatt caaacaatga ttcctaaaaa acactgcaag ggaaaattac tcataatcac
    16981 caatactcat tggttgcaaa atattgaata ccttgttaaa cagcttcctg attatgaatt
    17041 ccatatcaca gcttttacag atgtcgcgaa taatttaaaa caactaagta gccaagaaaa
    17101 tgtcttcatc tatccacata tcatcgctta tgtcttagta gatatgataa aaaattgcga
    17161 tatctatctt gatattaacc atgggagtaa attagatgaa ttgctagagc atgtcattgt
    17221 aaatcaaaag cccgttctct cttttgacaa tatcgcagca ccaatttttg agaattattc
    17281 acacagacaa gtcttctcct atcaccttcc cgaaaacttt gttactgcag tgcgattact
    17341 tagcgagtaa aaaaggagaa aaaatgaaac taaacgtcga actctcccgc tttcgtgtca
    17401 aagaaggcaa aaccgctcaa gtagatgaat ggatggcctt tctcaacgag cacatggaag
    17461 acacccttct cactcttgaa ggagagaaaa tgtatgtcga aaccatcttc cgtgaggtat
    17521 tggacggacg cgaatacctc tattggtact ctgtccaagc cgaaggagga attgaagtcg
    17581 aagattcaga atcctatatc gacaaaaaac atttggaata ttgggaaaaa tgcatcgacc
    17641 cgagctatgg tatggtcgat ttggatccac aagttatcat gattcccaag cctgtttatg
    17701 aaaccatgga agaattagac agacagtacg atgaaacatt taaaaaatga gttgctcagt
    17761 acaactcatt ttcttttcgg actaataccc aatgtcatcc gtcctagacg gctgatgcgt
    17821 gtcattttcc aagcaggaga ccagacaatt tcaacttgtg catcttcaat gccatcaatg
    17881 gtcttcaagg ctgtaacaag ctctcctggc atagtatccg cacaagaaca acctgagtct
    17941 gtaaaggtca taatgacctt acaaaaacca gcttcatcaa tatttatctc gtagaccaag
    18001 cccaaattat aaatatccaa ttcaatttcc ggatcgtaaa tagattccaa aacctctacc
    18061 aactgttctg acaaaacaag ggctcgctca ttgatctgaa tatcttctct catttatcca
    18121 aacactccta aaacatttat aaaaagtatt gtatcataat tatttgaaat atacttgtct
    18181 tatcagatgt tttcatctag ttttcaaagt gtacgaacct ctgaattctc accttgacca
    18241 atagaaaaga tatacttatg accttgagtc aagctatgat agaagccatg accagcataa
    18301 atctgaaata cttgcattgt atcactagac tcatctttat agatatgttg ataataagga
    18361 ttatccgcaa aaactgtctt tagatagtcg ttctccacag gtctggcagt cccttctaca
    18421 cgcactacct ggataaggta cccttcctca gaaatagccg tcatcgcaac tctttgatcc
    18481 cccatcaatt gatcatagaa atgcgtttct gggcttgtca taaagaaaat cccttcttcg
    18541 tttgctgcag tgatatgagc atgacgagca tgtggatttc catactcatc cagagttgca
    18601 aaaactccaa ccttcatatc ttccaaaata tgcataatat cttttagttc catggtatca
    18661 ccccttgaaa acacctattt tctaaagtat atcaaaaaca agcgaaaatg ttaagtggga
    18721 tattgataga aatggtgaaa gtgtttcatg aacaactccc tactgacaga accattaaag
    18781 aaggtagcta tgtttgcttc attttcaacc ttcaaaggtt cctcaaccct tttgatttcc
    18841 aattggtata gatttgactc tgaaccgatt atgacatcaa tcaaaatccg ttgtaactat
    18901 aaaaactacc taattataaa aaagcgactc ttgagtgctt tgaaccgttg atatatcgag
    18961 gtatgtaaac gtttactaaa caggtttgct ttacgtgctt tcttaagacc tggttttggg
    19021 ttccaaaagt aaaatctcaa taaaagccta ttaaagcaaa ctttcaaata gattaccaaa
    19081 aactcgtttt cggagcttat atagttgaga aatggataag caagtcgtca tagaatgact
    19141 tgttttttta ttccctgatt cgagttattt taaatactaa tcactgctca atatttatct
    19201 ttaattccct aaaatttacc ggttcaaatg actttatatg caaaatacct tctagctgta
    19261 atggtaattg cttagagacc aacctgccta taaaaggttg acttggtgta atagaacgct
    19321 gcagaattcc aatttgcatt ttaaatgctt tctctctacc atcacttaat ttcttatatg
    19381 tttccccttg catactccgg tatatcgttt ctgttaaggg acgaacttca tatgagtcaa
    19441 ttggattttt gcaaacaaaa ccaaaagatg catcactttc cacaaaatgt gtagtaaaaa
    19501 ttttaaactc aacctcatta gttgatatat atttaataga aacttgtaaa ttctctatat
    19561 caggtaaggg tgtatatctc gaactgccac ttatcacact tcgcatttgt tcaatagtat
    19621 tatctaatcc ttgactaaat aaatcaatgt agtatacatc tgttaaaata gctggtatct
    19681 tgcaatcaga aacctttatt gggacaaatt taactccctc atagagagac ttagttagag
    19741 ccgcttgcca ttcttttttg accatgttgc tattcaagct atttgatgat agaaaataaa
    19801 aaaatgttgt aactttttca agcccttcat ccattttgcc tataatacta tctcctggtt
    19861 gcatagacca tttatcgtag aaaatattat ctcgtccaaa ctcaatctct aatcgtttag
    19921 caatcatatc tactacatct tgatctccgt gattataact aataaaaatc atctcttcct
    19981 ctttccattc ctcatctaga tacttttcac ctataatcaa aattatccaa catattgaat
    20041 aatttggtgc cctagcaaca ctgtattcta ctgtat
//
LOCUS       DASFRC010000020        20039 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.020, whole genome shotgun sequence.
ACCESSION   DASFRC010000020 DASFRC010000000
VERSION     DASFRC010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 20039)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20039)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20039
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.020"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..1173)
                     /locus_tag="U1087_000531"
     CDS             complement(<1..1173)
                     /locus_tag="U1087_000531"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755043.1"
                     /translation="MNTQSISNRLRQHQHQDLAIKEAFLRFQAHHFDEPWERLLETFI
                     EQEGRVNLFPTPYDVSAELAAFLSQGDQPSEHLGAYTYRFAQAGLRQLPQLSPVEKDM
                     VVLVATYNLAVRFQLLDQAGSYYGVSLGSLVSQMNQVDFINVSKVANNLADRISRELD
                     LFILDYESLVISKPELSFEENSQAVIASYGQSVAKLDKASLLVEHLPAYQDLPLGIKA
                     DIITQFDQKKAELSQVKQEETVRFEEVDNVVTAYLTNQAEPLSSYDRRLGKSQHYEAY
                     DQLNVIQKFAILSHYDELAKLERPLQFRLGDFDEERRQTPIYEGETIFTYLEADGSAD
                     ELAREPGSQELAELVDLSRQILARHYQVLEAAGVPVEDFPEDSRGVLLDAVGKYRLP"
     gene            complement(1775..1921)
                     /locus_tag="U1087_000532"
                     /pseudo
     CDS             complement(1775..1921)
                     /locus_tag="U1087_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017370833.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
     gene            complement(1914..6827)
                     /locus_tag="U1087_000533"
     CDS             complement(1914..6827)
                     /locus_tag="U1087_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018367280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM4755044.1"
                     /translation="MTLPIQVKPIVTQEKGEKHVFRKSKKYRTLCSVALGTVATAVLA
                     LGGGIAKADELATTLVETSIVLTDNSATNLPEAQPAETSEHTTSLSETGQSQGTMPVT
                     IDETTLKQAINDAKAEGVTITSGQDMDLGTSQTAEETSQALDTAKADMDKQVSELDQV
                     TAQYQSDKAEHAAEVARIDRENATLQASHKQAEDAAKKLEKDVATTVSDMNHRFSNAK
                     VTVTDKTITSGDGTSPEAYEGYTKLVQGVSDQNQSAIATYVAKKTEADAQTAKNKQIE
                     AENAAGLAKAKEDNEAITKRNQAGQVAIDEENRRGQAAVDQANKDKQAQVTNRQAEIE
                     AIKKRNAQKQAEADATNKANEAYNASEKARYDRELAEIRKGEEGYISEALAQALDLNR
                     GEPQAQHGAATRNPDHIISTGNAMLGGYSNILDSTGFFVYDQFRTGETLRFNYSNLQN
                     ASFASKKITGVTYDITNLVSPAGTNSVKLVVPNDPTEGFIAYRGDGTGDWRNDKMEFR
                     VEAKYTLADGSQVTFSKEQPGVFTHSSLNHNNIGLEYVKDSSGKFVPINGSTVQVTGE
                     GLARSLGSNRAHEIGTPEEWDTTSSRYAYKGAIVSTVTSGNTYRVTFGQGDMPTQVGG
                     KTYWFALNTLPVARTVRPYTPKPLVKPNLDPVPDPLTYTPSVYTPKTFTPEPLVTFTP
                     KPTSPVEEPSLTLVKVALPTQPVYEKTPTPPAVPSVQVHGYRLATQPGIHKEVENSDR
                     VSIDKSLVAKASPVNYPLEVGDLSSNRVTTTNLIFEDYLPAGYVLNATTTEEHNTAYE
                     VAYDSSKHLVRLTAKDSLLSEVNKDLTKSYRLTAPVLYGTVVNDGAIYTNTYKLIINQ
                     GTPTAYTVTSNPVTVRTPGDGTTTTLIIPEKTNKNSDGIVINDTVVLVGSTNHYTLTW
                     DLDQYKGDQSSKETIAKGFFLLDDFPEEAVMTNDKTVSVTTLDGKTLSGFVATTYKDL
                     SEVPETLRHQLTTAKISPKGAFQVIVPEDNQAFYDTYVKTGTSLLVTSPMTVRTDLKD
                     KTLTYTNTAYQIDFGNGYATKEVTNTLVTPEPMKKNLNADHVDINGQAMLVGSKNFYT
                     LSWDLDQYKGIVATKDAIAKGFYFVDDYPEEALEIDTKAIQVVTQEGKIVSDLMIDTY
                     QNLEEAPDSLKAAFLAKKISPKGAFQVFRPKDNQAFYETYVKTGQSLTIIDPMTVKDN
                     LYNSGHIYTNKAYQVDFGLAYETEEVSNFIPIVTPKKVNTNDKGVTIDGKTVLPDTVN
                     YYKIVMDYSAYKGMAATKDQIAKGFYMVDDYPEEALELNPEGIQVIDGQGQAVKGLSV
                     KVYASLTESPKAVQEAMAGKGFVPKGAIQVFTADDPQAFYDTYVKTGQTLVVTNPMTI
                     KKDLVKTGGDYTNTAYQIDFGLAYVTETIVNNVPKIDPKKDVVIDLSHKEQSLDGKEI
                     ALNQVFNYRLQGAHIPAHRATDLTDYRFNDDYDEKHDQYDGVYQAYLMTDVTLIDGTV
                     LKSGTEVTEYTLQTVNTKSGQVSISFDKDFLTSISDESAFQADIYLQVKRIAAGEVEN
                     TFSHIVNGVSITSNTVKMTTPELVIPPTPPTPKPEVPGTPIPTPVPPQTGEAASLLGL
                     VGGGLMLGLAYGAYRKKKQVGSEDSYA"
     gene            complement(7155..8150)
                     /locus_tag="U1087_000534"
     CDS             complement(7155..8150)
                     /locus_tag="U1087_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HEM4755045.1"
                     /translation="MTTTKESKKGLSTSELIVHIRNKHGLIISEENDVDLLNMGYYHA
                     YKRFRYVKKANADGRLRLTSFNEIIAIYQFDKALKELFYPLLMTIETGLKNRAIESLV
                     AGTDSGLDDFLESQMNVLKNYVPEDKKFPIAQERYEATKTNLLETVAYYSDKNDSIKH
                     YLSSDYQIPIWVLFEVISFGQFSKILGCLTSESKQKLHEDVNLIPNVSNDMELLVNSL
                     IELRNATMHNNAVFDANFSSGVPKKVKKQIQMDLGLGQSSFQCQFIEDYLIVLIWSLL
                     KISVPKAQVRFYVDRFVSISHCFDEQLHNRDVLFKILSTNHKSKIEKLTIFLDNY"
     gene            complement(8217..11048)
                     /locus_tag="U1087_000535"
     CDS             complement(8217..11048)
                     /locus_tag="U1087_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000656693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HEM4755046.1"
                     /translation="MAVTKQELKRARLTRKSNLRQGRRTYRLKRQEARQNFISQSGRR
                     GFLFHRMVSSKSPAQVAYQETVSSAKKEFDDLKEEEDKRFDSLLSSANPYDLSHRELK
                     HHRLPQAKTRHKQARQHLKNVKEEEKAEDKKKASVRIDDAKRSRFFYQAKSFDRLQAE
                     QEVSQSKQDLKRVKAVTRHKSPKTKLKRAGRYIGREVLYLASQDDDLAGARNLVDSSY
                     QVARYTRTGIDTGKGAVKLSKEGTRFIVQRARNTKERYQNWRVGKGFSLKKKENQLAQ
                     RFKHEVARRANQTRPLGKIIQSLISSFKRAFMALMGNPVTWIVSGFLLFLLLMMSFFL
                     GFASQTLIQQDEFELTKAYTHMTWEDAEQTRTSEKGITYYTKVDDVMAYMNSQFQDYV
                     LEDRISVLPPSITYKDYLSTLWQDLNGGDSLKTMAELYDQPPYQLSKEEQDDLKELSE
                     EGVYASMQELENPFEGKTDDDVLPMTYRYGYYHLDGKPTMQEFIILEAKENQAVLAPL
                     DGTIHLDGDDVVITAGKKVSSVSLRLYGIHTGRLVEGQRVVVGDRIGQTKTNTGLKVS
                     YEKYDPDQKKLVAVNPAFYFPKVVQVQTTILPNIGQFGGDEFERAKAIYTYLKAKGAT
                     NQAIAAILGNWSVESAINPKRAEGDYLSPPVGASDSSWDDPNWLAMGGPAIYNGGYPN
                     IIRRGLGLGQWTDTADGSRRHTLLLEYAKRKGKPWYDLELQLDFMLEGDNPYYTNWLN
                     GFFQNTGSPASLAQVFLTYWEGNSGDKLLERQTRASEWYYQIEKGFSQPNGGTAQSDP
                     TALEAVRGDLFDNSIPGGGDGMGYAYGQCTWGVAARINQLGLKLKGRNGEKIPITSVM
                     GNGQDWVASAAALGVETASTPRAGAIISFAGGSHGTPIPYGHVAFVEKVYPDGSFLIS
                     ETNVNGNPNYTFRKISGVDAAMSFAYTVK"
     gene            complement(11050..13419)
                     /locus_tag="U1087_000536"
     CDS             complement(11050..13419)
                     /locus_tag="U1087_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017646985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM4755047.1"
                     /translation="MRNLLKPSTKSKRSATDKKRQKELRQELQPTTVNTLAYQGLFEN
                     GLMQVTPDYYSQSYLLGDVNYQTVGLEERALIVDKYSDMINALDDRTHFQLTLFNQRV
                     NLNKFRSSVLYPLHGDGYNHFREELNQMMNQNLENGENNFNTLKLITFGKSDSSVKQA
                     HRSLSQVGEYVKNGLAEIDCTFNRLEGEKRVNLLADMLRGDNHLPFSYKELALSGLTT
                     KHFIAPQSMSFKHKDYLTIDERYLQVVYVRDYGTELGDGFIRDLMQADREIIISFHVK
                     GSQKSEAMTKVRTKKTLMESQKIGEQQKMARSGIYLEKASHVLETTIDEADDLLNTMT
                     KTGDKLFETVFLIGLLEDSPEALKEALNDMRQVAGSHDLIIEPLPYMQEAAFNSLLPL
                     GKNFLKGISRSLLTSNIAVQSPWTSVDLQDKGGKYYGINQISNNIITIDRKALNTPSG
                     LILGTSGAGKGMGTKHEITTTRLKEVDDKTDIIVVDPENEYGLIGQAFDGESIIIAPD
                     SQTYLNVLDLSSHGFDEDPVKLKSEFLLSWIGKLLDRQMDGREKSIIDRVTRLTYQHF
                     LEPTLEEWVFVLSKQPEPEAGNLALDMELYVKGSLDMFAHRTNVTTDKSFVIYNVKKL
                     GEALKPIALMVVFEQIWNRVVRNQQLGKTTWIYFDEMQLLLLDEYASNFFFKLWSRVR
                     KYGAIPTGITQNVETLLMDANGRRILANSEFMILLKQAKNDREELVHLLGLSKELEKY
                     LVNPECGAGLIKAGHTVVPFKNRIPTDTQLFDLMSTDPDKMVQATREGE"
     gene            complement(13370..13726)
                     /locus_tag="U1087_000537"
     CDS             complement(13370..13726)
                     /locus_tag="U1087_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001097588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PrgI family protein"
                     /protein_id="HEM4755048.1"
                     /translation="MNTRVFKDISKYQHRAWLGFTTRQVIFVLPALVITVLVLGLNLF
                     FWQFGDWFVYGFTGSFTLPLLLFGVYRPNHLAFEHYLHYRLRFALTVPVRTLTGKENT
                     HAKSTKTINEIQAFCD"
     gene            complement(13815..14666)
                     /locus_tag="U1087_000538"
     CDS             complement(13815..14666)
                     /locus_tag="U1087_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001011946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbL"
                     /protein_id="HEM4755049.1"
                     /translation="MNNLFPQLVFLVSEKVSSDNLFEGFSLDLESTADLVKSLSDYNP
                     TVWAYMTAVTEQVMRPIGVAILALILILEFSKLAKKIAGSGGAMTIEAIAPMIVSFIM
                     VGVVMANTTVIVEAILGLAGHALSRIAGVVAQSGQTYDTLSGLKGFGTVGKMIIAFFA
                     LLIWLVRMASAAMVNLMVTIRFIQLYLMLPFAPITLPTFLSDEWRGVGIGYLKNIMVY
                     GVQGILIFLIVSLMPLFESAGKIAVANGVGAGEALVIMFGSFVQAILLIIALVGSQRT
                     ARSILGM"
     gene            complement(14686..14928)
                     /locus_tag="U1087_000539"
     CDS             complement(14686..14928)
                     /locus_tag="U1087_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018367287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755050.1"
                     /translation="MIQKLPNLTYGVDASSMFAQAMSLLQKGLVATGAFLVVIGVINL
                     ATNIKDGGPGVRNAILEIVGGVMVGAAGAFVTQITI"
     gene            complement(14938..16833)
                     /locus_tag="U1087_000540"
     CDS             complement(14938..16833)
                     /locus_tag="U1087_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002883241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretory system conjugative DNA
                     transfer family protein"
                     /protein_id="HEM4755051.1"
                     /translation="MMSKVRQVVFIMMGLALGYVCHRLSLLYDELSHLPVLERWTYLL
                     MEGQNVFSDEPWNFHFTLHSSLWFLFGLGAMSLTYLYTTSGAKVYREGQEYGSARFGT
                     RQESQAFASKNPFLDTILAKTVRLTLLEKNAPKYDRNKNLVVIGGSGAGKTFRFVKPN
                     LIQANCTNIVVDPKDHLPQKTGKFFLKEGYQIKILDLVSMMTSNGFNPFRYVETENDL
                     NRMLTVYFNNTKGNGSRSDPFWDEASMTLVRAIASYLVDFYNPPKTRAQLMEEDRLSK
                     KERKALHAKEKQDLENRRKRGRYPSFAEISKLIKLLHKADGVEKSVLEVMFERYAKTY
                     GTENFTMRNWADFQNYKDKTLDSVIAVTTAKFALFNIQSVIDLTKLDTMDIKSWGRQK
                     TMVYLVIPDNDSTFRFLSALFFSTVFSTLTRQADVDFKGKLPIHVRAYLDEFANVGEI
                     PDFAELTSTVRSRNISLVPILQNIAQLQGLYKEKDAWKTILGNCDSLLYLGGNDEETF
                     KFMSALLGKQTIDVRNTSRSFGQTGSGSLSHQKIARDLMTPDEVGNMDRGDCLVRIAN
                     TPAFYAKKYDPFKHPNWQYLADEEGDNWWWEPDLALTGEPPLDLRGHRVRNLSQDPRF
                     TATLKQK"
     gene            complement(16830..17318)
                     /locus_tag="U1087_000541"
                     /pseudo
     CDS             complement(16830..17318)
                     /locus_tag="U1087_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017648298.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(17376..17972)
                     /locus_tag="U1087_000542"
     CDS             complement(17376..17972)
                     /locus_tag="U1087_000542"
                     /inference="COORDINATES: protein motif:HMM:NF014566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM4755052.1"
                     /translation="MKTYLDARIWNIFGLYLYQYVNTILVSLYLGDQLSLSEVLVFQL
                     LYLASLIWLLKKCSRYKFGQSRLVWLVTCLGSMFLISVLVGILWPVTSTNQTNLISVQ
                     SQLPLAVFILFLTNASLVEELVYRGFLWSVFPKSYQSLLITSLVFALAHQPDSLGSWV
                     VYGILGLGLGFMRLKTDLLGVTMLHSVWNGLVLLTTFL"
     gene            complement(17950..18183)
                     /locus_tag="U1087_000543"
     CDS             complement(17950..18183)
                     /locus_tag="U1087_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000840775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM4755053.1"
                     /translation="MAELFWENLALLLAEKEMSWAELTRQMFAGSYQYPSEFNRLYQK
                     IRHYKSTCQMPQTKWVEKIVLVLEVDYEDLFRR"
     gene            complement(18193..18570)
                     /locus_tag="U1087_000544"
     CDS             complement(18193..18570)
                     /locus_tag="U1087_000544"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755054.1"
                     /translation="MRLYLSKHQDRHQSLIETLDAYGIAYELVDFEQLKKEDLLEWMR
                     LSPDCFDFLTPTCLIYKRRDNLPFSRFLDIIWDNRARSLRLPLIVDKDQVYPDVNLED
                     LRTFLPRELKAEKRQALKALLSV"
     gene            complement(18624..19004)
                     /locus_tag="U1087_000545"
                     /pseudo
     CDS             complement(18624..19004)
                     /locus_tag="U1087_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001050381.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(18988..>20039)
                     /gene="dcm"
                     /locus_tag="U1087_000546"
     CDS             complement(18988..>20039)
                     /gene="dcm"
                     /locus_tag="U1087_000546"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000670032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA (cytosine-5-)-methyltransferase"
                     /protein_id="HEM4755055.1"
                     /translation="ARCAKEIQPSYLFFENVKGLLSHDQGRTYATILNTLDELGYHVE
                     WQVLNSKDFGLPQNRERVFLIGHSRKRGFRPVFPLRGQGSPAHLDRLGNVNPSGKGMS
                     GEVYLSTGLSPTLTVNKGEGVKIAIPVLTPDRLDKRQNGRRFKDNQDPMFTLTAQDRH
                     GVLVAGNLPTSFDQAGRVYHTEGLSPTLTTMQGGDKIPKVLLRHEAPHLKIREATKQG
                     YAKATVGDSVNLSYPKSNSKRGRVGKQMANTLTTSSQQGVVIAALEYRKDKWFEVTGF
                     LVGDKLYRLRIRKLTPRECFRLQGFPDWAFDRAEAVSSKSQLYKQAGNSVSVPVIAAI
                     AGELKKLEEKHETTT"
BASE COUNT         5272 a         4699 c         4364 g         5704 t
ORIGIN      
        1 gggcaaacgg tatttcccaa ccgcatctaa caagacaccc cgactatcct ctggaaagtc
       61 ctcgacgggt acaccagctg cctctaaaac ttgataatgc cttgccaaga tctgacgact
      121 gaggtctacc aattctgcta gttcctgaga acctggctct ctagccaatt catctgccga
      181 cccatccgct tccagatagg taaaaatcgt ctctccttca tagatggggg tttgcctgcg
      241 ttcctcatca aagtcaccca aacgaaattg taatggtcgc tctagtttgg ctaattcatc
      301 gtagtggctt aaaatggcaa acttttggat cacgttcagc tggtcataag cctcatagtg
      361 ctggctcttg cctaagcgac ggtcataaga agagagcggt tcagcttgat tggtcagata
      421 agccgttacc acattatcaa cttcttcaaa tctgacggtt tcttcctgct tcacctgact
      481 gagctctgct tttttctggt cgaactgagt aatgatgtct gctttaatgc ccaagggcaa
      541 gtcctgatag gctggtaaat gttccacaag caaactcgcc ttatctagct tggccacaga
      601 ttgaccgtaa ctggcaatga cagcttggct attttcctca aaactcagtt caggcttaga
      661 gatgactaga gactcatagt ccaagataaa gaggtccagt tctcgactaa tgcggtccgc
      721 tagattatta gcgaccttgg acacattgat aaaatccacc tgattcatct gagacaccaa
      781 actccccaag gacacaccat aatagcttcc cgcttggtcc aaaagctgaa agcgaacggc
      841 gaggttatag gtcgctacca aaaccaccat gtctttttca acaggactga gctgggggag
      901 ttgtcgtaag ccagcctgtg caaagcgata ggtataggct cccaaatgtt cagaaggctg
      961 gtctccttgg ctcagaaaag ctgctagttc cgcactcaca tcgtagggag ttgggaaaag
     1021 attgacacga ccttcctgct caataaaggt ttccaaaagc ctttcccaag gctcatcaaa
     1081 atggtgggct tgaaaacgta aaaatgcctc cttaatggcc aaatcttgat gctgatgttg
     1141 acggaggcgg ttgctgatgg attgtgtatt catctgatag ttctcctttg attttcttta
     1201 gtcaaaaagg actgagaaag ctctcagtcc caatcgctta gagggtcatt gacagctctc
     1261 gctgtgcgtc tacttgaggt ctagttaggt ctgccatata gcttcgtaaa aactgggaac
     1321 gactatccaa cttgtcttgg gcaagagcca aatgaactaa gcctccgaaa taatcgtcac
     1381 tatctgcgtc cagctggtgg cgaatcaaat catctaaagt ctccaaacta taggggtcaa
     1441 agttgcccaa ttcccaacca tctgacgaca ccaaataagt agacgactga ccttgtaaaa
     1501 tatctgaaat aaactcattt ccatcccctg ttcggtagag attatctagt agtcgggtca
     1561 ggtcttgcct aatcacctca ctctgctcat ccgcaaccaa tcgcagttgc tcatccaaca
     1621 gataaatgtt gtctgtagcc atgtagtaag catagaggtc attaagaagc gtttgactgg
     1681 taatttgggt ctcgacactc ataatagcct tggtaaatga tgaagcatcc ctgtctaaaa
     1741 agtattgcat aacctgtcgc atttcctgaa aagtaggggg gtgaccagat aggatttctg
     1801 ccaaatcagc ttgtccatca ccatcagaat ccggacttag tggattggtt ccaagagcta
     1861 gttcttgagc atctgtgaga ccgtctcggt cactatcttt agtgtaaatg gtcttaggca
     1921 tagctatcct cacttcctac ttgctttttc ttacgatatg ctccataagc tagtcctaac
     1981 atcagaccgc caccaaccag gccaaggagt gaagctgcct cacctgtttg tggaggaact
     2041 ggtgttggaa ttggagttcc tggaacttct ggctttggag taggaggtgt cggtgggatt
     2101 acaagctcag gggtcgtcat tttaactgta ttagaggtaa tgctaacccc attaacaata
     2161 tggctaaagg tattttccac ttctccagcc gcaatccgct tgacttgaag gtaaatatcg
     2221 gcttggaagg cggattcgtc tgaaatactg gtcagaaaat ccttgtcaaa ggaaatagac
     2281 acttgaccag acttggtatt caccgtttga agcgtgtact cggtcacttc tgttcccgat
     2341 ttcaggactg tcccatctat caaggttacg tccgtcatca ggtaagcctg ataaacacca
     2401 tcatactggt catgtttttc atcgtaatca tcgttaaagc gatagtcagt gagatctgtc
     2461 gctcgatgag ctggaatgtg ggctccttga agacgatagt taaagacctg attaagggca
     2521 atctccttgc catccaaact ctgctccttg tgagacaagt caataaccac atcctttttg
     2581 ggatcaattt tgggtacatt attgacaatc gtttctgtca cataagccag tccaaaatca
     2641 atctgatagg cggtattggt gtagtcacca cctgttttaa ccaagtcttt ctttatggtc
     2701 atgggattgg tcacgaccaa ggtctgacct gttttgacat aggtgtcata aaaggcctgt
     2761 gggtcatctg ccgtaaagac ctgaatggct cctttaggca caaatccctt acctgccata
     2821 gcctcttgaa cagcctttgg tgattcagtt agagaagcgt acaccttaac ggataagccc
     2881 ttgactgctt gcccttgacc atcaatcacc tgaattcctt ctggatttag ctccaaggcc
     2941 tcttctgggt aatcgtccac catatagaat cccttggcaa tctggtcctt ggtcgcagcc
     3001 atgcccttat aggcactata atccatgaca atcttgtagt aattgacggt atcaggtaag
     3061 acagtcttcc catcaatggt cacaccctta tcattggtgt tgactttttt cggagtaaca
     3121 atgggaataa agttggatac ctcttccgtt tcgtaagcca gaccaaagtc aacctgatag
     3181 gctttattgg tgtagatatg acctgagtta tagagattgt ccttgacggt catagggtca
     3241 ataatagtta gagattgacc ggtcttgaca taagtctcat agaaggcctg gttgtctttt
     3301 ggtcgaaaga cctgaaaagc acctttggga ctaattttct tagccaaaaa ggctgctttc
     3361 aagctatctg gagcttcttc caaattctga taggtgtcaa tcatcaggtc agatacaatc
     3421 ttcccttctt gtgtcaccac ttgaatagcc ttggtgtcaa tctcaagagc ttcctctggg
     3481 tagtcatcca caaagtaaaa ccccttagca atggcgtctt tagtcgccac aatacccttg
     3541 tactggtcta agtcccatga caaggtatag aagtttttag aaccaacaag catggcctga
     3601 ccattgatgt ctacgtggtc ggcattgagg ttcttcttca tcggttccgg tgtaacaagc
     3661 gtgttggtca cttccttcgt cgcataacca ttaccaaaat caatctgata ggcagtattg
     3721 gtgtaggtta aagtcttgtc cttgaggtca gtacgaaccg tcatgggact ggtcaccaaa
     3781 aggctagtgc ctgtcttgac ataagtgtca taaaaggctt gattgtcttc tggaacaatg
     3841 acttgaaaag ctcctttagg gctaatctta gccgttgtca gttgatgtct aagtgtttct
     3901 ggaacttctg acaagtcctt ataagtcgtt gccacaaaac cagataaggt ttttccatcc
     3961 agggttgtga cacttactgt cttatcatta gtcatcacag cttcttctgg aaaatcatcc
     4021 aagaggaaaa agcccttggc aatggtctcc ttggaagact ggtcaccctt atactgatcc
     4081 aggtcccagg tcaacgtata gtgattggtt gaaccaacta agaccaccgt atcattgata
     4141 acaatgccat cgctgttttt gttggtcttc tcagggatta tcaaggtcgt tgtagtccca
     4201 tcacctggtg tccgaacggt cacagggttt gaggtgacgg tgtaggcggt tggtgttccc
     4261 tgattgatga tgagcttgta agtgttagtg taaatcgcac catcattgac caccgtaccg
     4321 tacaaaacag gagctgtcag gcgatagctc ttagtcaagt ccttattgac ttcagagagg
     4381 agactgtcct tagctgtcaa gcgaaccaag tgcttagagc tgtcataagc cacttcatag
     4441 gcagtgttat gctcttctgt tgtcgttgca ttcaggacat aacctgctgg taggtagtcc
     4501 tcaaagatga ggttagttgt cgtgacacga tttgaagaca agtcccccac ttccaaggga
     4561 tagttgacgg gagatgcctt agcaactaaa ctcttgtcaa tagacacacg gtcactattt
     4621 tccacctcct tatggatacc tggttgggtc gctaaacggt agccatgtac ttgaacactt
     4681 ggaacagctg gtggcgtagg cgttttttca tagacgggtt gagttggcaa agccactttc
     4741 accaatgtca aactcggctc ctcaacaggg ctggttggtt ttggtgtgaa ggttaccaga
     4801 ggttctggcg tgaaggtctt tggcgtatag acagacggag tgtaggttaa gggatctggt
     4861 acagggtcaa ggttaggttt gaccaagggt tttggtgtat aaggcctaac tgtccgtgct
     4921 acaggcagag tattaagggc aaaccagtag gtctttcctc cgacctgagt gggcatatct
     4981 ccctgaccaa aggtcactcg gtaggtattg ccagaagtca ccgttgacac aatcgccccc
     5041 ttataggcat agcggctgga agtcgtgtcc cattcctcag gtgtgccaat ctcatgggct
     5101 cggttagaac caagtgaccg tgctagaccc tcgcctgtta cttgaacagt tgaaccattg
     5161 ataggaacga acttgcctga tgaatccttg acatattcta agccaatgtt gttgtggttt
     5221 agtgatgaat gggtgaatac tcctggctgt tccttagaaa aggtcacttg actaccatca
     5281 gctaaggtgt atttggcctc cactcgaaat tccatcttgt cgtttcgcca gtcacctgtt
     5341 ccgtctccac gataggcaat aaacccttct gtcgggtcat ttggaacaac cagcttaaca
     5401 ctattggttc ctgctgggga aacaagattg gtaatatcat aggtcacgcc tgtaatcttc
     5461 ttgctcgcaa agctggcgtt ttgaaggttc gaatagttga accgcaaagt ctcccctgta
     5521 cgaaactggt cataaacaaa gaaacccgtc gaatcaagga tattactata accacccagc
     5581 atagcatttc ccgtgctaat aatgtgatcg ggattgcgag tagctgcccc gtgttgggct
     5641 tgaggttctc cacgattaag gtcaagagcc tgggcaaggg cttctgaaat atagccctct
     5701 tctccctttc taatctctgc cagttctctg tcgtagcgag ctttttcaga ggcattgtag
     5761 gcttcattgg ccttgttagt cgcatcggct tctgcctgtt tctgggcatt acgttttttg
     5821 atggcttcaa tctctgcctg acggttggtc acttgagctt gcttgtcctt attggcctgg
     5881 tccaccgctg cttgaccacg gcgattctcc tcgtcaatgg caacctgacc tgcctgattt
     5941 cgcttggtaa tggcctcatt gtcttctttt gccttggcta aaccagctgc gttttcagct
     6001 tcaatttgtt tgtttttagc agtttgggca tcagcttcgg ttttcttagc cacataagtg
     6061 gcgatagcag attggttctg gtcactaacg ccttggacca gtttagtgta gccctcatag
     6121 gcttcgggag atgtgccatc gcctgatgta atggttttat ccgttaccgt taccttggca
     6181 tttgagaaac ggtggttcat gtcagaaacg gtggtagcga catctttttc aagctttttg
     6241 gccgcgtctt cagcttgttt atggctagct tgtagggtcg cattctccct atcaatccgt
     6301 gcgacttccg ccgcgtgttc agccttatcg gattggtact gggctgtcac ttggtcaagc
     6361 tctgacacct gcttgtccat atcagcctta gcggtgtcaa gggcttgact ggtttcttca
     6421 gctgtctggg aagttccaag gtccatgtct tgacctgatg taattgtcac tccctctgcc
     6481 ttggcgtcat tgattgcctg ctttaatgtc gtctcatcaa tggtcacagg catggttcct
     6541 tgcgactgac ctgtttcaga aagtgacgtt gtgtgttcac ttgtctcagc aggctgggct
     6601 tcaggaaggt tggtcgctga gttatccgtc agaacaatgg aagtttcaac tagtgtcgta
     6661 gccaattcat cagccttggc gatacctcct cctaaagcta gtaccgccgt tgcgacggtt
     6721 cctagtgcaa cagagcagag agtacggtac ttcttgcttt tgcgaaagac atgtttctca
     6781 cccttttctt gggtcacaat tggtttcact tgaatgggta gggtcatggg acactccttt
     6841 atggtaatat ttatcgattg ccagaactac tggctaacct tgccccatca taccaagaag
     6901 gatttgcgga tgttatcaca taaaaaagcc agtagcacac ggctactggc tggagagaga
     6961 tatgctaaca gtttcattaa acgttagcat atcctttatt ttttcacagt tcattctgca
     7021 atggatatgg gttttcagtc tccattccga ctttttgtga gatagtcaag aataaaaaag
     7081 aagaactgac gcatcagctc ttccagacac gtcagtacgt gccccaattc gataatacta
     7141 ttctacacga tggattagta attgtcaaga aaaatggtca atttttcaat tttagactta
     7201 tggttagtac tcaaaatctt aaacaagaca tcacgattgt gtaattgctc atcaaaacag
     7261 tgactgattg atacaaatct atcaacatag aaacgaacct gtgcttttgg gacagatatt
     7321 ttcaacaagg accaaattaa cacaatcaaa taatcttcaa taaattgaca ctgaaagcta
     7381 gactgaccta aacctaaatc catttgtatt tgctttttga ctttcttagg cacaccactc
     7441 gaaaaattag cgtcaaaaac agcattgtta tgcatagttg cgttacgtaa ttcaataagg
     7501 ctattaacta atagctccat atcatttgaa acgtttggaa ttaggttaac atcttcatgc
     7561 agtttctgct tagattcact ggttaaacaa cctaatattt tactgaattg accaaaagaa
     7621 atcacttcaa acaaaaccca aataggaatt tgatagtcag aacttaaata gtgtttaatt
     7681 gaatcatttt tatctgaata ataagctacc gtttctaata aattagtttt agttgcttca
     7741 taacgctcct gagcaatagg gaatttctta tcctctggta cataattctt caaaacgttc
     7801 atctgactct ctaaaaaatc atctaatccg ctatccgttc ctgcgacaag agattcgatt
     7861 gctctatttt tgagaccagt ttcaatggtc attaaaagtg gatagaataa ttctttcaac
     7921 gctttatcaa actgataaat ggcaataatt tcattaaatg aggttaaacg aagccttcca
     7981 tctgcatttg ccttttttac atagcgaaaa cgtttataag catgataata tcccatattc
     8041 agcaaatcaa catcgttttc ttcacttata attaatccat gcttattgcg aatatgtaca
     8101 atcaactcac ttgttgatag acctttttta gattctttgg ttgtcgtcat ttatagtttt
     8161 taactttcta tgattactcg tataaaacct attatagcat atcacattct gaatttctat
     8221 ttcaccgtat aagcaaaact catagctgcg tctactccgc tgattttgcg gaaggtgtaa
     8281 ttaggatttc cattgacgtt ggtctctgag atgagaaacg acccatctgg gtaaactttc
     8341 tcgacaaagg ccacatgccc gtatggaata ggtgtgccgt gactgcctcc cgcaaaggaa
     8401 atgatagccc ccgcacgagg ggttgaagcc gtctcaacac ctaatgctgc agccgacgct
     8461 acccaatctt gaccgttacc cataacgcta gtaataggaa ttttctctcc gtttcgccct
     8521 ttgagcttga gacccaattg gttgatacgt gccgcaactc cccaagtaca ttggccgtag
     8581 gcatagccca tcccgtcacc acctccaggg atagaattgt caaagaggtc tcccctaacg
     8641 gcttctaggg cagttgggtc actctgggct gttccaccat ttggttgact aaagcccttt
     8701 tcaatctgat agtaccactc agaagccctg gtttgtcgct ccaggagctt gtcgccacta
     8761 ttgccctccc aataggtcag gaagacctga gctagactgg ctggactgcc cgtattctgg
     8821 aagaaaccgt taagccagtt ggtgtaatag ggattgtccc cctcaagcat aaagtccaac
     8881 tgaagctcta aatcatacca gggcttgccc tttctcttgg cgtactccag aagtaaggta
     8941 tggcgacgtg aaccgtctgc ggtgtccgtc cattgaccta gaccaagacc tcgacgaata
     9001 atgttaggat agccaccgtt ataaatggca gggcctccca tcgccagcca gttagggtcg
     9061 tcccatgagc tatcgcttgc cccaacaggc gggctaagat aatccccttc tgcccgtttt
     9121 ggattgatag ctgattcaac tgaccagttg cctaagatgg ctgcgatagc ctgattggtc
     9181 gcaccttttg ccttgaggta ggtgtaaatg gccttggctc gttcaaattc atctccacca
     9241 aattgaccaa tattgggtaa gatggtggtt tgaacctgaa ccaccttggg aaagtaaaag
     9301 gcaggattga ccgcaactaa tttcttttgg tctgggtcat atttctcata ggacacttta
     9361 agacctgtgt tagtcttggt ctgaccaatt ctatcaccca caacgactct ttgcccctca
     9421 accaagcgac ctgtgtgaat gccatacaaa cgcaaagaga ctgaactgac ctttttacca
     9481 gcggtaataa cgacatcatc accatccaga tgaatcgtcc catcaagagg ggcgagaacc
     9541 gcttgatttt cctttgcttc aaggataata aactcttgca tggtgggctt accgtccaaa
     9601 tggtagtagc catagcgata ggtcatgggc aaaacatcat catctgtctt cccctcaaaa
     9661 gggttctcaa gttcctgcat actggcatag acaccttcct ccgacaattc tttgaggtca
     9721 tcttgttcct ctttggacaa ttgataaggt ggttgatcat aaagctctgc catggtttta
     9781 aggctatctc caccatttaa gtcctgccaa agcgtggata gataatcctt ataagtgata
     9841 gagggtggta agacacttat cctatcttct aagacatagt cttgaaactg gctattcatg
     9901 taggccataa cgtcatctac cttggtgtag taagtgatac ccttttcgct tgttcgggtc
     9961 tgttccgcat cctcccaagt catgtgagtg taagcctttg ttaactcaaa ctcatcttgt
    10021 tggataagag tctgactggc aaaacctaag aaaaaagaca tcataagcaa taaaaacaac
    10081 aagaaacctg aaacaatcca agtaacagga ttgcccatca aggccataaa agcccgcttg
    10141 aaactagaga tgaggctttg aataatctta ccaagtggtc tggtctgatt agcacgccta
    10201 gctacttcat gcttgaagcg ttgggcaagc tggttctctt tcttcttcaa actaaaccct
    10261 ttacctactc gccagttttg ataacgttct ttggtatttc tagcccgttg gacgataaaa
    10321 cgtgtgcctt cttttgagag cttgacggcc cctttacctg tgtcaatacc tgttctggta
    10381 tagcgtgcaa cctgatagct agaatccacc agattcctag cccctgccaa gtcgtcatct
    10441 tgactggcta ggtaaagaac ttcacgacca atgtatcttc cagctcgctt gagcttggtc
    10501 tttggagact tatgcctggt cacagcttta actcgtttca agtcttgttt gctttgtgag
    10561 acctcttgtt ccgcctgcaa acggtcaaaa gacttggctt ggtagaaaaa acgagagcgt
    10621 ttggcatcat ctattcggac agaggctttt ttcttatcct cagccttttc ttcctccttg
    10681 acgtttttca agtgttgtct agcctgcttg tgcctggtct ttgcttgggg taaacgatga
    10741 tgctttaatt ctcgatggga taggtcataa ggattggcgg aggataaaag gctatcaaac
    10801 cgcttgtctt cctcttcttt gaggtcgtca aattctttct tagcactaga gaccgtttcc
    10861 tgataagcca cttgtgctgg agatttagac gacaccatac gatgaaagag aaagcctcgt
    10921 ctacctgact gagaaataaa gttttgcctt gcttcctgtc gtttaaggcg ataggtgcgt
    10981 ctgccctgtc tgagattgct tttcctcgtg agccttgctc gcttcaattc ttgctttgtg
    11041 acagccatct tattctcctt cccttgtggc ttggaccatc ttatcagggt ctgtgctcat
    11101 caggtcaaag agttgggtat cggttgggat acggttcttg aagggtacaa ccgtatgacc
    11161 ggccttaatg agacctgccc cacattcggg attaaccagg tatttctcca gctccttaga
    11221 caaaccaagc agatgtacca actcttctcg atcattttta gcctgtttga gcagaatcat
    11281 aaactcacta ttggccaaaa ttcgtcgccc attggcatcc atcaagagag tttccacgtt
    11341 ttgggtaata cccgttggaa tcgccccgta cttccgcacc cgactccaga gtttgaagaa
    11401 gaaattgctg gcatactcat ccaacaacaa cagttgcatc tcatcaaagt aaatccaagt
    11461 ggttttcccc agttgttggt ttctgaccac ccgattccag atttgttcaa agactaccat
    11521 gagggcaatg ggtttgaggg cttctcctag ttttttgaca ttgtaaatga caaaggattt
    11581 atcagttgtc acattggttc ggtgggcaaa catatccaga gaccctttga catagagctc
    11641 catatcaagt gcgagattgc ctgcttctgg ttcaggttgc ttggacaata caaagaccca
    11701 ttcttccaag gttggctcta ggaaatgttg gtaggtcagc cgcgtcactc ggtcaatgat
    11761 tgacttctct cggccgtcca tttggcggtc taagagcttg ccaatccagg acaataggaa
    11821 ctctgattta agcttgacag ggtcctcatc aaagccatga ctggataaat caagaacatt
    11881 gaggtaggtc tggctatctg gggcaatgat gatgctttcc ccatcaaagg cttgaccaat
    11941 caagccatac tcattttctg ggtctaccac gataatatct gtcttgtcat cgacttcttt
    12001 gagcctagta gtggtgattt catgcttggt tcccatgccc ttacctgccc cagatgtccc
    12061 taggataaga ccagacgggg tattgagagc cttgcggtca atggtgatga tgttgtttga
    12121 aatctggtta atgccataat attttccacc cttatcctgc aaatccaccg aggtccaagg
    12181 agattgtacg gcgatattgg aggtcaagag acttcgagaa atgcctttta agaagttctt
    12241 cccaagaggg agaaggctat taaaggctgc ttcctgcata tagggcaagg gttcaataat
    12301 caagtcgtga gagccagcga cctgtcgcat atcattcaga gcttctttga gagcttctgg
    12361 gctatcttct aacagtccaa tcagaaaaac agtctcaaag agtttatccc ctgttttggt
    12421 catggtattt agaaggtcgt ccgcttcatc aatagtggtt tctagaacat gactagcctt
    12481 ttccaagtag atacctgaac gagccatctt ttgttgctca ccgattttct gggattccat
    12541 gagggtcttc ttggttctaa ccttggtcat ggcttctgat ttttgagacc ctttgacatg
    12601 aaaactgatg atgatttccc tgtccgcctg catgagatca cggataaaac catcccccag
    12661 ttccgttcca taatctctga catagaccac ctgcaaataa cgctcatcaa tcgttaggta
    12721 atccttgtgc ttgaaggaca tactttgtgg ggcaataaag tgtttcgtcg ttagacccga
    12781 cagagctaac tccttatagc taaatggcag atggttgtct cctcgaagca tatccgcaag
    12841 tagattaacc ctcttctctc cctctaagcg attgaaggtg caatcaatct cagctaaacc
    12901 atttttaaca tattccccaa cttgggataa ggagcgatgt gcctgtttaa cggaactatc
    12961 tgatttgcca aatgtaatca attttagggt attaaaatta ttctctccat tctccaaatt
    13021 ctggttcatc atctgattca attcctcacg gaaatgattg tagccatcac catgcagagg
    13081 gtaaagaacg cttgaacgga acttgttcag gttgacccgt tgattgaaga gagttagctg
    13141 aaaatgcgtg cggtcatcta aggcgttaat catgtccgaa tacttgtcca caataagcgc
    13201 tcgctcctcc agcccaacgg tctggtaatt aacatcaccc aaaagatagc tttgggaata
    13261 atagtcaggt gtgacttgca tgaggccatt ctcaaacaag ccctgataag caagggtatt
    13321 gacggttgtt ggttgtagtt cttgacgcaa ctccttttgg cgcttcttat cagtcgcaga
    13381 acgcttggat ttcgttgatg gttttagtag atttcgcatg ggtattttcc tttccagtta
    13441 gggttcgtac aggtacagta agggcaaacc gtaggcggta atgcaggtag tgttcaaagg
    13501 ctaggtgatt ggggcgatag accccaaata gaagcaaggg aagggtaaaa ctccctgtaa
    13561 aaccatagac aaaccagtcc ccaaactgcc aaaaaaagag gtttaagccc aagactaaaa
    13621 ctgttatgac tagggctggc aaaacaaaga taacctgcct ggtcgtaaag ccaagccagg
    13681 ctcggtgctg gtattttgaa atgtccttaa agacacgggt attcattcaa taatcctcca
    13741 taactaagat atgattgaca aaaacggagc agaccctcta ctccgttatc gtgttaagct
    13801 ggaacaaggt catcctacat ccctaaaata cttctggctg tgcgttgaga gccaaccagg
    13861 gcaatgataa gcagaatggc ttggacaaaa ctcccaaaca tgatgacgag agcctcacct
    13921 gctcctaccc cgtttgcgac cgcaattttc ccagccgatt caaagagcgg catgagggat
    13981 acaatcaaga agatgagaat accctgaaca ccatagacca taatattttt caggtagcca
    14041 atgcctaccc cacgccactc atcactcaaa aaagttggga gagtgattgg ggcaaaggga
    14101 agcatgagat agagctgaat aaaacgaatg gtcaccatga gattaaccat agcggcacta
    14161 gccattctaa ccagccaaat caagagggca aaaaaggcaa taatcatttt cccgacggtg
    14221 ccaaaccctt ttagacctga tagggtgtca taagtttgac cactttgggc aactacgcct
    14281 gcaattcggg agagggcatg gccagctaag cccaaaatgg cttccacaat caccgtggta
    14341 ttagccatca ccactcccac catgataaaa gagacaatca tcggggcaat ggcctcaatg
    14401 gtcatggctc caccagaccc tgcaatcttc ttggctaatt ttgaaaactc caagattaag
    14461 ataagggcta agatagccac gccaatcgga cgcatgacct gctcggtgac ggctgtcatg
    14521 taagcccaga cggttgggtt atagtctgat agggatttga ccaaatcagc ggtcgattct
    14581 aaatccagcg agaagccctc aaagaggtta tctgaggaga ctttttctga gaccagaaaa
    14641 actagctgag ggaataagtt attcatcaca ttgctggtct ccttcttaaa tggtaatctg
    14701 ggtcacaaag gcccctgcag ctccgaccat caccccaccg acaatctcta agatggcatt
    14761 acggacgcct ggtccaccat ctttgatgtt tgtcgctagg ttgataaccc caatcacgac
    14821 aagaaaagct cctgtcgcta ccagaccctt ttgaagcagg gacatggcct gggcaaacat
    14881 ggagctggca tcaaccccat aggttaggtt tggtagtttt tgtatcatct gttttcctca
    14941 tttctgtttt agtgttgcgg taaagcgagg gtcttgactc aggtttcgca ctcggtgtcc
    15001 ccttaaatca agcggtggtt ctcctgtcaa ggcaaggtct ggctcccacc accagttgtc
    15061 accttcctca tctgccaaat actgccagtt ggggtgctta aaggggtcat acttcttggc
    15121 atagaaggca ggggtattgg caattctgac caagcaatcc cctcgatcca tgttgccaac
    15181 ttcatctggt gtcatgaggt cacgggcaat cttttgatgg ctaagagaac cagaccctgt
    15241 ttggccaaag gaccgactgg tatttctgac atcaatggtt tgtttcccta agagtgccga
    15301 cataaactta aaggtctcct catcattccc accaagatag agcaggctgt cacagttacc
    15361 caagatggtc ttccaagcat ctttttcttt gtagaggcct tgaagctggg caatgttttg
    15421 taggatagga actaagctaa tgtttcggga gcgaacggtt gaggtcaatt ccgcaaaatc
    15481 tggaatctca cccacgttcg caaactcgtc cagataagcc cgcacgtgaa taggaagctt
    15541 tcccttaaag tccacatcag cctgtctggt caaggtcgaa aagacagttg agaaaaagag
    15601 ggcagacaag aagcgaaagg tagaatcatt gtctggaata accaagtaaa ccatggtctt
    15661 ctgccgtccc caactcttaa tgtccatagt gtctagctta gttaagtcaa tgaccgactg
    15721 gatattaaag agggcaaact tagccgtcgt cacagcaatg actgaatcca aggtcttatc
    15781 cttgtagttc tgaaaatctg cccagtttcg catagtgaag ttttctgtac cataggtctt
    15841 ggcgtagcgc tcaaacatga cctctaggac actcttctca accccgtcag ccttatgaag
    15901 gagcttaatc aacttggaaa tttccgcaaa agacgggtat cgtcccctct tacgacggtt
    15961 ctccaagtct tgtttctcct tagcatgtag agcttttctc tcttttttag acaaacgatc
    16021 ttcttccatc agctgtgctc tggtctttgg tgggttgtaa aaatcaacca ggtaagaagc
    16081 aatggctctc accaaagtca tcgaagcctc gtcccaaaag ggatcgctgc gtgacccatt
    16141 gcctttggtg ttattgaaat acaccgtcag catacggttc aaatcattct cagtttccac
    16201 atagcgaaaa ggattgaaac cgttactggt catcatggat actaagtcta aaatctttat
    16261 ctgatagccc tctttcagga agaactttcc tgtcttttga ggcaggtggt ccttggggtc
    16321 aaccacaata ttggtacagt tggcttgaat cagattgggt ttaacaaagc gaaaggtctt
    16381 tcctgcacct gaaccaccga tgaccactag gttcttgttt cggtcatatt tgggagcatt
    16441 cttctccaag agggtcaacc gaacggtctt cgccaatata gtgtccaaaa aaggattttt
    16501 actggcaaag gcctgacttt cctgtcttgt accaaagcga gctgatccat attcctgccc
    16561 ctctcggtaa accttggctc ctgaagtcgt gtagaggtag gtcaagctca ttgccccaag
    16621 accaaataga aaccagaggc tggagtgaag ggtaaagtgg aaattccaag gttcatcaga
    16681 aaaaacattt tgaccttcca tcaagaggta ggtccatcgt tcaagaacag gcaggtgact
    16741 cagctcatca tagagaaggc tcaagcgatg acagacataa cctagagcta gacccatcat
    16801 gataaaaacg acttgtctta ctttagacat cacagcacca tttctttcgt tttaacgcta
    16861 gagctatcac tcagaacaat gctttcctta gctaaggcta tttcttcatc tagggtctta
    16921 tctgtcacca attccttgag cttgtctggg tcattgacca gctctttgag gagggtgtct
    16981 aggtgggtat ccagtaaaga cctatccttg gtgtagaaat aaaggtagtc gtcttgaaaa
    17041 gagatggcta gaggtaggtt ttcctttatc agtacctctt ttagcttctc aacatccacg
    17101 ggcttatcta agagttctgt ttttaagtca atgacatcaa tagcaaatgg ggtcttgacc
    17161 aaatctgcca aggtttgaag gccaagttta taagctgttt cttggtagag accacgtttg
    17221 acagaccagt ccagaatctt gagaaaggtt ctcagcgtta agaaactact tcgttctaaa
    17281 tattgaaagg cttggcgttc ttgttattca ctagacataa cttctcctct cttgtgggat
    17341 aggcttatct taaaccagtt gcctcgcctt ttttatcaca gaaaagtagt tagtaagacc
    17401 agaccattcc aaacagaatg aagcattgtc actcctagta ggtctgtctt tagtcgcatg
    17461 aaaccaagac ccaatcctaa aatcccatag accacccaac tccctaagct gtcaggctga
    17521 tgagccaagg caaaaacaag actggttatc agtaaggatt ggtaagactt tggaaagact
    17581 gaccagagga aaccacggta aaccaactct tcaaccagac tagcattggt taaaaagagg
    17641 ataaagacag ccaaagggag ttgactttgt acagatataa ggttcgtttg attggtggaa
    17701 gtgaccggcc acagaatccc gacaaggact gatatcagaa acatagaacc taggcaggtc
    17761 accaaccaaa caagccgaga ctgaccaaat ttataccgcg agcacttctt taagagccag
    17821 attagactcg ccaagtaaag gagctgaaaa acaaggactt ccgacaagga tagctggtct
    17881 cctaaataca gagatactaa aatagtattc acatactggt agagatagag accaaaaatg
    17941 ttccaaattc tagcgtctaa ataggtcttc atagtccacc tccaagacca gcacaatttt
    18001 ctccacccac ttggtctgag gcatttgaca ggtggacttg tagtgcctga ttttctgata
    18061 gagccgattg aactcgctag ggtactggta actgcccgca aacatctgcc gtgttaactc
    18121 agcccagctc atctcttttt ctgccaacaa gagggcaagg ttttcccaaa ataattccgc
    18181 catagccccc tcctaaacac tcaataaggc tttgagagct tgtcgctttt ccgctttcag
    18241 ttcacgagga agaaaagtcc gtaagtcttc taaattcaca tcaggataaa cctggtcctt
    18301 atcgacgatc agcggtaaac gaagacttct tgcccgattg tcccagatga tgtcaagaaa
    18361 tcgggaaaag gggagattat ccctgcgttt gtatatcaaa caggttgggg tcagaaagtc
    18421 aaagcagtct ggagatagcc gcatccattc cagtaggtct tctttcttca gttgctcaaa
    18481 gtccaccagc tcatatgcaa tgccataagc atctagggtc tcaatcaagg actggtgtcg
    18541 gtcttggtgt ttacttagat agagtcgcat atcacaccct ccttgacctt agtcaggtct
    18601 tccatcacaa acccaccaag gattctggtc atattgacag gaaccctgcc ctcactaaag
    18661 tatttcactg ttactaggct catcaggata ccgtccttgc cttgatgggt gtaattctgc
    18721 ccataggctc taaaagccaa atccccatcg tccgtcaaga aactatccac accgtttttg
    18781 atgtccttct cctccaagaa ctcaaagagc cgatggagat tggattcgta aaagagagga
    18841 aaattcattg ccttgtgata gtcatcctca aaagtcacgc ttatctcaca gtcataattt
    18901 ggcaaggaaa gtagcctttc tgtcagtcgc tccacctctg cttgatgaat agcctcatcc
    18961 aactctgaac aggttcttat ggattcttta tgtagtagtt tcatgcttct cctccaattt
    19021 ctttaattct cctgcgatag cagcgataac aggaactgaa acactgtttc cagcctgctt
    19081 atagagctga ctcttacttg aaaccgcctc tgcccgatcg aaagcccaat ctggaaagcc
    19141 ttgtaggcga aaacactctc ttggtgtgag cttgcgaatc ctcaaacgat aaagtttatc
    19201 tcccaccaaa aatcctgtca cctcaaacca tttgtccttg cggtattcca gggctgcgat
    19261 aacgacacct tgttgggagc tggtcgttag ggtgttggcc atctgtttgc ctacccgtcc
    19321 acgtttagaa ttggacttgg gataggacag gttgaccgaa tcgccaactg tcgccttggc
    19381 atagccttgc ttagtcgcct cacggatttt taagtgtggc gcttcgtgac gaagcaagac
    19441 ttttggaatc ttatccccac cctgcatggt ggtgagggtc ggggaaagac cctctgtatg
    19501 ataaactcgt cctgcttgat caaagctagt cggcaaattt ccagccacta gtaccccatg
    19561 cctgtcttga gccgttaggg taaacatggg gtcttgatta tccttgaatc gtctaccatt
    19621 ctgtcgttta tcaagcctgt ctggtgttaa gactggaatg gcaatcttaa caccctcacc
    19681 cttatttacg gttaaagttg gcgacagtcc cgttgataga tagacctccc cactcatccc
    19741 ctttccagat ggattgacat ttcctagtcg gtcaagatga gctgggctac cttgtcctcg
    19801 gagaggaaat actggtcgga aacctcgctt tcgagaatgt ccgataagaa agacccgctc
    19861 ccgattttgg ggaaggccga aatctttact gttaagcacc tgccactcga catgataccc
    19921 caattcatcc aacgtattga ggattgtggc gtacgtccgt ccctggtcgt gactgagtaa
    19981 ccccttgacg ttctcaaaaa atagataaga tggttgaatt tccttggcac atcgagcaa
//
LOCUS       DASFRC010000021        19851 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.021, whole genome shotgun sequence.
ACCESSION   DASFRC010000021 DASFRC010000000
VERSION     DASFRC010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 19851)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19851)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19851
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.021"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..792)
                     /locus_tag="U1087_000547"
     CDS             complement(<1..792)
                     /locus_tag="U1087_000547"
                     /inference="COORDINATES: protein motif:HMM:NF019142.1"
                     /note="The YSIRK form of extended signal peptide directs
                     nascent proteins to the cross-wall site, while signal
                     peptides lacking YSIRK direct proteins instead to the cell
                     pole. A large fraction of YSIRK proteins are surface
                     proteins anchored by sortase-mediated processing of a
                     C-terminal LPXTG motif; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YSIRK-type signal peptide-containing protein"
                     /protein_id="HEM4755056.1"
                     /translation="MKQNSGQTVHRFSLRKTSFGLVSATIASLFMLFSFSSERKVFAE
                     DSAKTVHYRYIAEDELTASEKQLIVNELPKLVEESDNAYYLIYKPKQSVSEGILPATG
                     DEWFGQVIGALVGAGLLILAIRKGRKGKKEFAGLFILGATGSLLLAPPAFSLTNQTLA
                     RFNQELSISVGEQLPEPMAIEGYRYIGYIKEGKSDEIAKPIHPNSELLGTDNAVNPDK
                     PSLAVEHVDSVQTEPVAYDTLEFPNSELLAGETVVSQEGVDGVRTI"
     gene            complement(1577..2362)
                     /locus_tag="U1087_000548"
     CDS             complement(1577..2362)
                     /locus_tag="U1087_000548"
                     /inference="COORDINATES: protein motif:HMM:NF017946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-2 family transporter protein"
                     /protein_id="HEM4755057.1"
                     /translation="MTRYFYLYIHFMKLQWKRYIQYREDAVIGMIGYSVNTVISIYVL
                     KVFLDNLSNFPGWSTNELVLLFGFVTMARAGWNLIFINTLFIGDYVREGTFDVLLLRP
                     VNTLLLIIFSKIDFESIGEFCIGLIIFWMALLTEFETLSAWFILKIILLLIGSILCYA
                     AIHLFVNSLTFFIKDVYSINFIVWRLDETTRYPNSIYPSWLSILLWFIPYAFIGYFPL
                     MSITKSLPLLADLGTISAGYIIFLLVYKIVWKFSISRYHSYRQ"
     gene            complement(2365..3141)
                     /locus_tag="U1087_000549"
     CDS             complement(2365..3141)
                     /locus_tag="U1087_000549"
                     /inference="COORDINATES: protein motif:HMM:NF017946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-2 family transporter protein"
                     /protein_id="HEM4755058.1"
                     /translation="MNVLAYTIAEFKRRKSYRVSTILTILGAFLVVAIQISVWTSVVT
                     ENTSSQLVLYAVISRMMFILFPDHRTASIISEMIQKGDTAVYFLRPHSFMGMHFFRQV
                     GSFVYDLIFVVTPLTFALVFYSFVTGISLVPEMVLSFIMSALLGLLISFLFGYLLGLL
                     SIRFNQILGVLEFYDALLMLFGGSVLPINFFPEMLQKLIVLTPFYAMLSVPSSILSAL
                     LPAQYVLQQLCLQMFWVLLLALFISMYQKKLFKVMNYYGG"
     gene            complement(3479..5026)
                     /gene="purH"
                     /locus_tag="U1087_000550"
     CDS             complement(3479..5026)
                     /gene="purH"
                     /locus_tag="U1087_000550"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006146083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HEM4755059.1"
                     /translation="MTKRALISVSDKNGIVEFAQELTKLGWEIISTGGTKVALNQAGV
                     ATIAIDDVTGFPEMMDGRVKTLHPKIHGGLLARRDLDSHLQAANDHEIGLIDLVVVNL
                     YPFKETILRSDVTYDLAVENIDIGGPSMLRSAAKNHASVTVVVDPADYPTVLGEIAEQ
                     GQTTYSTRQRLAAKVFRHTAAYDALIAAYFTKQVGEDKPEKLTITYDLNQPMRYGENP
                     QQHADFYQNALPTDYSIASAKQLNGKELSFNNIRDADAAIRIIRDFKNRPTVVALKHM
                     NPCGIGQAETIEQAWDYAYEADPVSIFGGIVVLNREVDAATAEKMHPIFLEIIIAPSY
                     SAEALAILTNKKKNLRILELAFDAQDVSEVEKEFTGVIGGLLVQDQDVVVESPADWQV
                     VTERQPSEQEWAAMEFAWKSSKYVKSNGIIITNDKMTLGVGPGQTNRVASVRIAIEQA
                     KDRLDGAVLASDAFFPFADNVEEIAAAGIKAIIQPGGSVRDQDSIDMANKYGLTMVFT
                     GVRHFRH"
     gene            complement(5036..5587)
                     /gene="purN"
                     /locus_tag="U1087_000551"
     CDS             complement(5036..5587)
                     /gene="purN"
                     /locus_tag="U1087_000551"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HEM4755060.1"
                     /translation="MKRIAVFASGNGSNFQVIAEQFEVAFVFSDHRNAYVLERAEKLG
                     VPAFAFELKEFADKQVYEEALIQLLDQHQIDLVVLAGYMKIVGPTLLAQYEGRIINIH
                     PAYLPEFPGAHGIEDAWQAGVSESGVTVHWVDSGIDTGQIIQQVRVPRLADDTLETFE
                     TRIHEAEYQLYPAVLEELGAVKN"
     gene            complement(5584..6606)
                     /locus_tag="U1087_000552"
     CDS             complement(5584..6606)
                     /locus_tag="U1087_000552"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009729529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HEM4755061.1"
                     /translation="MTNKNAYAQSGVDVEAGYEVVERIKKHVARTERLGVMGALGGFG
                     GMFDLTKLDVKEPVLVSGTDGVGTKLMLAIQYDKHDTIGQDCVAMCVNDIIAAGAEPL
                     YFLDYIATGKNEPAKLEQVVAGVAEGCVQAGCGLIGGETAEMPGMYGEDDYDLAGFAV
                     GIAEKSQIIDGSKVQEGDILLGLASSGIHSNGYSLVRRVFADVSGDALLPELNGRAMK
                     DVLLEPTRIYVQQVLPLVKAGLVNGIAHITGGGFIENVPRMFADNLAAEIEEDKIPVL
                     PIFTALETYGHIRHEEMFEIFNMGIGLVLAVSPDKVDSVCQLVDEEVYTIGRIIAKED
                     KSVVIK"
     gene            complement(6663..8117)
                     /locus_tag="U1087_000553"
     CDS             complement(6663..8117)
                     /locus_tag="U1087_000553"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009908857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HEM4755062.1"
                     /translation="MTYEVKSLNEECGVFGIWGHPQAAQVTYFGLHSLQHRGQEGAGI
                     LANDGGFLRRHRDTGLIAEVFKKSEDLDRLTGTAAIGHVRYATSGSASIHNIQPFLFD
                     FADMQVGLAHNGNLTNAVSLKAELEKNGSIFSSSSDTEILMHLIRRSHNPDFMGKIKE
                     ALNTVKGGFAYLIMLEDKLVAALDPNGFRPLSIGKMKNGAWVVASETCAFEVVGAEWV
                     RDVDPGEIVVIDDSGIQYDSYTRDTQLAVCSMEYVYFARPDSVIHGVNVHTARKNMGR
                     RLAQEFKYEADIVVGVPNSSLSAASGFSEESGLPNEMGLIKNQYTQRTFIQPTQELRE
                     QGVRMKLSAVSSIVKGKRVVMVDDSIVRGTTSRRIVQLLREAGAAEVHVAIGSPELKY
                     PCFYGIDIQTRRELISANHTVEEVCEIIGADSLTYLSLEGMIEAIGIDTDAPKGGLCV
                     AYFDGEFPTPLYDYEEEYLRSLEEKTSFYIENVK"
     gene            complement(8120..11839)
                     /locus_tag="U1087_000554"
     CDS             complement(8120..11839)
                     /locus_tag="U1087_000554"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001042262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HEM4755063.1"
                     /translation="MAKRIFVEKKADFQIKAEALRKELTHNLQLTSLTSVRLVQVYDV
                     FHLEEDLLEQAIKHIFTEQVTDKVLSEAELGLEGAVYFAIEALPGQFDQRAASSQEAL
                     LLLGSRQEVRVNTGQLYILNGDVQEEELAAIKNYLLNPVDSRFKDMDAPLVAQEFSVS
                     DTTIPSLDFFDNFGAEEFAAYKREAGLAMEVEDLLFIQDYFKSIGRVPTETELKVLDT
                     YWSDHCRHTTFETELKSIDFSASKFQKQLQATYDKYLAMRTELGRTDKPQTLMDMATI
                     FGRYERANGRLDDMEVSDEINACSVKIEVDVDGVKEPWLLMFKNETHNHPTEIEPFGG
                     AATCIGGAIRDPLSGRSYVYQAMRISGAGDITQPLTATRSGKLPQQIISKTAAHGYSS
                     YGNQIGLATTYVREYFHPGFVAKRMELGAVVGAAPKENVVREKPVAGDVVILLGGKTG
                     RDGIGGATGSSKVQTVESVETAGAEVQKGNAIEERKIQRLFRNGDVTRLIKKSNDFGA
                     GGVCVAIGELADGLEIDLDKVPLKYAGLNGTEIAISESQERMSVVVRPEDVDTFIAAC
                     REENIHAVVVAKVTEKPNLVMTWNGQTIVDLERSFLDTNGVRVVVDAKVVDSAVNLPE
                     TRTTSAETLQEDLKNLLSDLNHTSQKGLQTIFDSSVGRSTVNHPLGGRHQLTPTESSV
                     QKLPVQQGVTTTASVMAQGYHPYLADWSPYHGAAYAVIEATARLVATGANWSKARFSY
                     QEYFQRMDKQAERFGQPVAALLGSIEAQIQLGLPSIGGKDSMSGTFEDLTVPPTLVAF
                     GVTTADSRKVLSPEFKAAGEYIYYLPGQILSEDIDFALIKSNFETFEKWQSDYAITAA
                     SAVKYGGVLESLALMSFGNQVGARVELADLETSLTGQLGGFVFTSKEDIPDAVKIGQT
                     TTDFTLVVNGVNLAGQDLQAAFEGKLEEVYPTEFEQATDLQDVPAITSSAVIQAKERV
                     DVPLVYIPVFPGTNSEYDSAKAFEQAGAKVNLVPFVTLDAASIENSVKTMVDNITKAN
                     ILFFAGGFSAADEPDGSAKFIVTILRNAKVRSAIDQFIEKGGLIIGICNGFQALVKSG
                     LLPYGNFEEAGETSPTLFYNDANQHVAKMVETRIANVNSPWLAGVQVGDIHAIPVSHG
                     EGKFVVTDEEFAVLRDNGQIFSQYVDFTGQPSMDSKYNPNGSSHAIEGITSRNGQIIG
                     KMGHSERYEDGLFQNIPGKKDQELFVSAVRYFTGK"
     gene            complement(11852..12559)
                     /locus_tag="U1087_000555"
     CDS             complement(11852..12559)
                     /locus_tag="U1087_000555"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000043309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEM4755064.1"
                     /translation="MKTDLLYSGKAKDIYATADSDQIVAVYKDQATAFNGGKKEQITG
                     KGRLNNLISSLIFEKLNEAGVKTHFIKRLSDTEQLNKKVEIIPLEVVLRNVTAGSFSK
                     RFGVEEGIVLPTPIVEFYYKKDELDDPFINEEHIAFLNLASSEEIAYIKEETRRINAF
                     LKDLFAQIGLNLVDFKLEFGIDSTGQILLADEFSPDNCRLWDADGNHLDKDVFRRGLG
                     ELTEVYEVVLAKLQEVK"
     gene            complement(12677..12925)
                     /locus_tag="U1087_000556"
     CDS             complement(12677..12925)
                     /locus_tag="U1087_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEM4755065.1"
                     /translation="MTREQIYQRVVELIQDEKGEDFKVQPESTLADNIAADSVEIMEF
                     VLTLEDEFGVDIPDAAIERFETLSDIVDFIYEELQKRS"
     gene            complement(12918..13925)
                     /gene="plsX"
                     /locus_tag="U1087_000557"
     CDS             complement(12918..13925)
                     /gene="plsX"
                     /locus_tag="U1087_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HEM4755066.1"
                     /translation="MKRIAVDAMGGDHAPQAVVEGVNQALAAFPDIEIQLYGDEAKIK
                     QYLTATERVSIVHTTEKINSDDEPVKAIRRKKEASMVLATKAVKDGQADAVLSAGNTG
                     ALLAAGVFVVGRIKNIDRPGLMSTLPTMDGKGFDMMDLGANAENTAHHLYQYGILGSF
                     YAEHVRGVKQPRVGLLNNGTEDTKGTPVHQEAYKLLAEDKSINFIGNVEARELLNSVA
                     DVVVTDGFTGNAVLKTIEGTAKSIVGQLTGSIKNGGLRAKLGGLMVKPTLKKALGAMD
                     YKTAGGAVLLGLKAPVIKAHGSSDAQSIFYTIKQTRSILEAGIVEKSVAKFSVVEESH
                     D"
     gene            complement(13922..14704)
                     /gene="recO"
                     /locus_tag="U1087_000558"
     CDS             complement(13922..14704)
                     /gene="recO"
                     /locus_tag="U1087_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HEM4755067.1"
                     /translation="MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKFR
                     LVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKAINADIFKLSYATYILALADAAL
                     QDKVYDPALFSFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGVSLNFHECAFCHRVGL
                     PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKL
                     RLFIDQLYEEYVGIHLKSKKFIDDLSSWGQIMKPGTENEETE"
     gene            complement(14691..15869)
                     /locus_tag="U1087_000559"
     CDS             complement(14691..15869)
                     /locus_tag="U1087_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEM4755068.1"
                     /translation="MDLLNRFNKNLNRIEVSMIRQFDQSISDVPGILKLTLGEPDFTT
                     PDHVKEAAKAAIDANKSYYTGMAGLLELRQAAAEFVAEKYNLHYNPENEILSTIGATE
                     ALSASLVAILEAGDTVLLPAPAYPGYEPIVNMVGADVVEIDTTANHFVLTPEMLEEAI
                     IEQGDKLKAVILNYPANPTGVTYSREQIRAFADVLRKYPVFVLSDEVYAELTYTGQPH
                     TSIAEFLPEQTILIQGLSKSHAMTGWRIGLIMSQAPIIAQIIKSHQYLVTAASTAMQY
                     GAVEALKNGKDDALPMRAEYVKRRDYIIEKMTDLGFKIIKPDGAFYIFAKIPAGYNQD
                     SFSFLQDFARKKAVAFIPGAAFGQYGEGYVRISYAASMEKIQTAMARLKEYLEENGTN
                     "
     gene            complement(15956..16924)
                     /locus_tag="U1087_000560"
     CDS             complement(15956..16924)
                     /locus_tag="U1087_000560"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HEM4755069.1"
                     /translation="MAFTDLKLFALSSNQKLAEQVSKKIGIPLGKSSVRQFSDGEIQV
                     NIEESIRGTHVYILQSTSSPVNDNLMEILIMVDALKRASAESVNVVMPYYGYARQDRK
                     ARAREPITSKLVANMLQTAGVNRLLTIDLHAAQIQGFFDIPVDHLMGAPLIADYFERR
                     GMVGDGYVVVSPDHGGVTRARKLAQFLKTPIAIIDKRRSVDKMNTSEVMNIIGDIKDK
                     TCILIDDMIDTAGTICHAADALADAGATAVYASCTHPVLSGPAMDNISKSAIKKLVVL
                     DTIEIAEDRLIDKIEHISTAELLAEAIIRIHEKRPLSPLFEASRVK"
     gene            complement(17027..18268)
                     /locus_tag="U1087_000561"
     CDS             complement(17027..18268)
                     /locus_tag="U1087_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HEM4755070.1"
                     /translation="MKKKILATIMLSTVVLSNANYVAVISANDVDSQIAAKNQQISEL
                     TAQQAEAQQQVDAIQGQVDAIVSEQAKLTEENTRLEAESQALAADIERLSADIVSRDG
                     ALKEQARSAQVDGSASSYINTILDSKSIVDAVSRVNAMREIVSANNRMLEQQKADKEA
                     IAEKQKANQEAITTLAANRQKLEDDAQVLQVRQAELEAAKLNLAVQKATAEDEKNSLL
                     AQKAAAEEAARQAAARQAEYQAQQAALAQQQVASVSAPVVSTPVETTVTETVATVSQS
                     TPTVSTPTTSISSGSGSSAAANNARYDASSYPIGECTWGVKSQLSWVGPYWGDAKQWL
                     ASARAEGFSTGSTPQVGAIAVWTGGYYGHVAVVTAVQSSTSIQVVESNYMGRRYIGNH
                     RGWFNPTTTSEGAVYYIYPPY"
     gene            complement(18353..18868)
                     /gene="mreD"
                     /locus_tag="U1087_000562"
     CDS             complement(18353..18868)
                     /gene="mreD"
                     /locus_tag="U1087_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HEM4755071.1"
                     /translation="MRNKMIEIFMFPILFFILLLDGQISTLVTNWSVGLFTISSHLVL
                     MLAIFYANYVSLGFSLFIFTLLGLVYDISYLNLIGIATTTLPLVLYCIYFFFQGAVSK
                     RGINILILLVAIFQFEFISYSFARIFHITNLSVFIFVFNKLLPSLLFNLVLFFVLQPS
                     FERLFGITNKT"
     gene            complement(18858..19694)
                     /gene="mreC"
                     /locus_tag="U1087_000563"
     CDS             complement(18858..19694)
                     /gene="mreC"
                     /locus_tag="U1087_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HEM4755072.1"
                     /translation="MNKFSKLVVVVSIFLLLSFSLLFVTFSKGLQVPYLNNIVRVVVT
                     PIQSVISVPTRFFSEQKDVLTDLVNAYEENKQLKEAIMSLEGMAAENTSLKEENASLR
                     SSLGVVSDFPEKQLIPGSVLVRTPSAWSEHIAINIGETSGVTSNALVVANGGLVGIVS
                     SLSSDSAVVTLFTNSDEFTKLPVKISVDSKEIYGILSGYDADTNSFIIDQLNSADEIA
                     VGSNVVTSDLAGATSANIQIGKVLSVKSNSNSLNREVYVEPTASFSNIYSVLVVGQTN
                     AQ"
     gene            complement(19754..19841)
                     /locus_tag="U1087_000564"
     tRNA            complement(19754..19841)
                     /locus_tag="U1087_000564"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(19805..19807),aa:Ser,seq:gct)
BASE COUNT         5852 a         4807 c         3714 g         5478 t
ORIGIN      
        1 aatggtgcgt acgccgtcaa ctccttcttg gctgacaact gtctcaccgg ctaggagttc
       61 gctattcgga aactcaaggg tatcataagc gacgggttca gtttgaacac tatctacatg
      121 ctcaactgcc aaacttggtt tatccggatt gacagcattg tctgtaccca gtaactcaga
      181 gttaggatga ataggttttg ctatttcatc actcttacct tcctttatgt aaccaatata
      241 tctatagccc tcaatagcca tcggttctgg caattgttca cctacactga tagataattc
      301 ctgattaaat cgagccaagg tttgattggt taaagaaaag gcaggaggtg ctaataacaa
      361 tgagcctgtc gcccctaaaa tgaacaatcc cgcaaactct tttttcccct tacgaccttt
      421 acggatagcc aaaatcagca accctgctcc aacaagtgct cctattactt gcccaaacca
      481 ttcatcacca gtagcgggca aaatcccctc tgatactgac tgctttggct tataaatcaa
      541 gtaataggca ttatcacttt cttctactaa tttcggtaat tcatttacga ttaattgctt
      601 ttctgacgct gttaattcat cttctgcaat atagcgataa tgcactgttt tggcactatc
      661 ttcagcaaat acctttcttt ctgaagaaaa tgaaaacagc atgaaaagac tagcaatggt
      721 agcagatact agtccaaacg atgtttttct caaagaaaag cgatgaacgg tctgtccaga
      781 attttgtttc atataatata cttccttaat attttataga aaaatcaaaa gcaaacattt
      841 tcggcctcac gtgcatttag aaaaaagaaa agaattgcgt gcaagctatc ccaaatttcc
      901 tctgcgaaag atagtctgat tttgattaag tggtcagttt gtttcagtag cccaccttga
      961 acgaaagatg gttggcagtt gagctagcac ttggttaaac cattaaagta aaactgaagg
     1021 actataatac gcatattaaa aaatctctct aatccaatat taaagattac agagttccaa
     1081 tttaccttta taccatcagt tcctatttca agaccaggtg tagctcccag tacctattct
     1141 caaaatctat gccaaatctc agtatagcga ttgtatcgca ataataccaa ctactgactg
     1201 acaattcaca cacctttttg ttagatggta cattccccct tccccagttt caaaaatctt
     1261 gttgatcccg ctacgatata catgggatat gatatagaat cctcttgcaa gcacagcaaa
     1321 aataaacaaa acctatctca ctggctagag tcgcaattag ctaactgttc ctagtctttt
     1381 agcttgatag ctggtaaact gaaaacctgc tggaaatctt catgcgtcaa agcaataaaa
     1441 gaccgactga atagctatct gtagacttct ggtttcacgc accattatac tagaatctga
     1501 ggaatattgc aacacagata gtcataaatc attatgttat tcttattttc tccgattcca
     1561 aaataaatcc ctaaatttac tgcctataac tatgataacg actaatacta aatttccaaa
     1621 caatcttata aacaagtaaa aatatgatat agccagcaga aatagtccct aaatctgcta
     1681 agagaggtaa tgattttgtt attgacatca gtgggaaata tccaataaat gcatatggaa
     1741 tgaaccataa taatattgat aaccagctag gataaatact atttggatag cgagttgttt
     1801 catccagtct ccaaacaata aagttaatgg aatacacatc tttgataaaa aatgttaatg
     1861 agttaacgaa gaggtggatt gctgcgtaac ataaaatact acctattagt aaaaggatga
     1921 ttttcagtat aaaccaagcc gataacgttt caaattctgt aagcagtgcc atccaaaata
     1981 ttatcagacc aatacaaaat tcgccaatac tttcaaaatc tatctttgaa aaaatgatga
     2041 gtaatagggt gtttactggc ctaagtaata agacatcaaa tgttccttct ctgacataat
     2101 ctccaataaa taaggtgttg atgaaaatca aattccagcc agctctggcc attgttacaa
     2161 atccaaacaa gagtactaac tcatttgtag accatccagg aaaatttgat agattatcta
     2221 aaaatacttt taaaacatag attgagataa cagtgttcac gctatagcct atcattccaa
     2281 tgacggcatc ttctctatat tggatatacc tcttccattg aagtttcata aaatgaatat
     2341 acaagtaaaa atatcttgtc atcactaacc tccataatag ttcatcactt taaatagctt
     2401 cttctgatac atagaaataa ataaagccag aaggagaacc caaaacatct gtaagcacaa
     2461 ttgttgtaaa acatattggg ctggtaataa agccgataaa atagatgaag gaactgataa
     2521 catagcatag aaaggagtta aaacaataag tttttgcaac atttctggaa aaaagttaat
     2581 aggtaatact gatccaccaa aaagcatcaa caaggcatcg taaaattcta aaacacctaa
     2641 aatctgatta aaacggatag ataaaagccc taagagatag ccaaataaaa acgaaatcaa
     2701 tagacctaat agagccgaca tgataaatga tagcaccatt tcaggaacaa gagatattcc
     2761 tgtaacgaat gaataaaaga caagagcaaa cgtcaaggga gtgactacaa aaatcaaatc
     2821 ataaacaaat gaacctactt gtctaaaaaa atgcatcccc ataaaactat ggggtcttaa
     2881 aaaatagact gccgtatcac ctttttgaat catctctgaa ataatggagg cggtacgatg
     2941 atctggaaaa agaatgaaca tcatcctaga aattactgca tatagaacga gttgagatga
     3001 tgtgttttca gtgactacac tggtccaaac cgaaatctga atggctacaa ccaaaaaggc
     3061 accaagaatt gtcaaaatag tactcaccct atatgatttt cgtctcttaa attctgctat
     3121 tgtataagct aatacattca ccttgatgtc tccttatcca ataataatat atccgctaaa
     3181 cttggatctg taatatgata atctctgatt ttttggtctt tgacaaactc ttgaagtaaa
     3241 tctaatttct cttcttcaat caacatttca gtcattgaag cgaggctggg taaaaactag
     3301 ccaataacta aaaaatacac agacaaattg agctgcttca gatgaaattc agccgaactg
     3361 tctgtgtttt tctttctgtt tatactctct tggactaatt tcttagccaa tttcgtaaga
     3421 ttcatgctca ttagaaggaa tcctatctca gtttttccca gtctctagat ataggctctc
     3481 aatgtctaaa atgtctgact cccgtaaaga ccatggtcaa accgtatttg ttggccatgt
     3541 caatggagtc ttggtcgcga acagagcctc ctggttggat gatagccttg atacctgcgg
     3601 ctgcaatttc ttccacgtta tcagcaaatg ggaagaaggc atctgacgcc aaaacggctc
     3661 catccaaacg gtccttggct tgctcgatgg cgatacggac agacgccaca cggttggttt
     3721 gtcccggccc cacgcccaag gtcatcttgt cattggtgat gatgatgccg ttggacttga
     3781 catacttgga ggacttccag gcgaactcca tagccgccca ctcttgctcg gacggttgcc
     3841 gctcggtcac cacctgccag tccgctggac tttccaccac cacgtcctga tcctgcacca
     3901 agagtccgcc gataacgcct gtgaactctt tttccacttc gcttacatcc tgtgcgtcaa
     3961 aggccaactc caaaatccga agatttttct ttttattggt caaaatcgct agcgcttctg
     4021 ccgagtagct cggtgcgatg atgatttcta agaaaatcgg gtgcatcttt tcagccgtcg
     4081 cagcatctac ttccctgttc agcacgacaa tgcctccgaa aatcgatact gggtcagcct
     4141 cataggcata atcccaagcc tgctcaatag tctctgcctg cccaatacca caagggttca
     4201 tgtgtttgag tgctacaaca gttggacggt tcttgaaatc acgaataatc cggatagctg
     4261 catccgcatc acgaatgttg ttgaaggaca actccttacc gtttagctgt ttagcagagg
     4321 caatcgaata atctgttgga agggcatttt ggtagaaatc cgcatgttgc tggggatttt
     4381 ctccatagcg cataggttga ttgaggtcat aggtaatggt gagtttttca ggcttgtctt
     4441 cgccgacttg cttggtaaag taggctgcaa tcaaggcgtc gtaggctgcg gtgtgacgga
     4501 agaccttggc tgccaatcgc tgacgcgttg agtaggtcgt ctgcccctgc tctgctattt
     4561 cccctaaaac cgtcggataa tctgccggat ccacaacaac tgtcacgctg gcgtggttct
     4621 tggccgcaga acgaagcata gacggaccgc cgatgtcgat gttctccacc gccaagtcgt
     4681 aggtcacatc tgaacgcaaa atagtctctt tgaagggata aagatttacc accaccaagt
     4741 caatcaggcc aatttcatgg tcgttagctg cttgtaggtg actgtccaaa tcccgacgag
     4801 ccaacaagcc cccgtggatt ttggggtgca gggtcttgac acggccgtcc atcatttcag
     4861 gaaaaccggt cacatcatca atggcaattg tcgctacacc cgcctgattc aaggcaacct
     4921 ttgtgcctcc tgtcgagatg atttcccagc caagcttggt caattcttgg gcaaattcta
     4981 caataccatt tttatctgat acgctaatta acgcacgttt tgtcatgatt tctccttaat
     5041 ttttcactgc ccccaactcc tccaaaactg ctggatagag ttggtactcc gcttcatgta
     5101 ttcttgtttc aaaggtttcc aaggtatcat cggctagtct aggcactcga acttgctgaa
     5161 taatttgtcc tgtgtcaata ccactatcca cccagtggac tgttacgcca ctttcagata
     5221 caccagcctg ccaagcatct tcaatcccat gagcacctgg aaattccggc aaataggctg
     5281 ggtggatatt aatgatacga ccttcgtact gagccagcag agttggtccc acaatcttca
     5341 tatagcctgc caataccacc aaatcaatct ggtgctggtc taagagttgg atgagtgctt
     5401 cttcgtagac ctgcttatcc gcaaactctt ttaattcgaa tgcaaaggct ggtactccta
     5461 gtttttcagc tcgttccagg acataggcgt ttctgtggtc tgaaaagacg aatgctactt
     5521 caaactgctc tgcgatgact tggaaattgg agccgttgcc tgatgcaaac actgctattc
     5581 gtttcatttg atgaccacac tcttgtcttc cttggcgatg atgcgaccaa tagtgtaaac
     5641 ttcctcgtca actagttgac agacactgtc aaccttgtct ggactgacag ccaataccaa
     5701 accgataccc atattgaaga tttcaaacat ttcttcatgt ctgatgtggc cgtatgtttc
     5761 tagggctgta aagattggaa ggactggaat cttatcttct tcaatctcag ctgctaagtt
     5821 gtccgcaaac atacgaggca cattttcgat aaatccgccg cctgtgatat gggcaatgcc
     5881 gttgaccagc cctgctttta ccagaggcaa cacctgctgg acatagatac gggtaggctc
     5941 taggaggaca tccttcatag ctctgccatt gagctctggc aacagagcgt cgccagaaac
     6001 atctgcaaaa acgcgtcgga caagggaata gccgttggag tggatgccgc tggaagctag
     6061 gccgaggaga atgtcgccct cctggacctt actgccgtca ataatctggg acttctccgc
     6121 aataccgaca gcaaagccag ctaggtcata gtcatcctca ccgtacatac caggcatttc
     6181 agccgtctca ccgccaatca agccacaacc agcctggaca cagccttccg caacacctgc
     6241 aaccacctgc tccagcttgg ctggttcatt ttttcctgtc gcaatgtagt cgaggaagta
     6301 aagtggctcc gcacctgctg cgataatatc gttgacacac atagccacgc agtcctgacc
     6361 aatcgtatca tgcttgtcat actggatagc cagcatgagc ttggttccca caccgtctgt
     6421 cccagatacc aagactggct ctttgacatc cagcttggtc aggtcaaaca taccaccaaa
     6481 accaccgagg gctcccataa cacccaaacg ttctgtccga gccacatgct tcttaatccg
     6541 ctcaaccact tcataaccag cttcgacatc aacacctgat tgggcataag catttttatt
     6601 tgtcattgtt tttcctttca acagtttaca ggtctgtcaa gcatacttga caactctgtc
     6661 acttacttga cattctcgat ataaaaactc gttttctctt ctaggctacg gagatattct
     6721 tcctcatagt catagagagg agttggaaat tctccgtcaa aataggccac acagagtcca
     6781 ccttttggag catcggtgtc gataccaatg gcctcaatca tcccttcaag agaaaggtag
     6841 gtcagactgt cagctccgat aatctcacag acttcctcaa ccgtatgatt ggctgaaatc
     6901 aattcccgac gggtctgaat gtcaatacca tagaaacaag ggtacttgag ttcaggactt
     6961 ccaatagcta catgaacttc cgctgctcct gcttctctca atagctgaac gatgcgacgg
     7021 ctggtcgtgc cacggacaat ggaatcatca accataacta ctcgtttacc ctttacaatg
     7081 ctagaaacgg ctgacaattt catccgaaca ccttgttcgc gaagctcctg agtcggttgg
     7141 ataaatgtcc gctgggtata ctgatttttt atcaacccca tttcattggg cagaccggat
     7201 tcttctgaga atccactggc tgcggagaga gaggagtttg gtacaccgac gacaatatct
     7261 gcctcgtatt taaattcctg ggccaaacga cggcccatgt tttttctagc cgtatggaca
     7321 ttgactccat gaataaccga gtccggtcgg gcaaaataga catattccat agagcagact
     7381 gccagctgcg tgtctcttgt atagctatca tattgaattc ctgaatcatc aatgacgaca
     7441 atttcaccag gatccacatc tcgcacccat tcagccccca ctacttcaaa agcacaggtt
     7501 tcgctagcca ctacccaggc accatttttc atctttccaa ttgaaagtgg acggaaacca
     7561 ttaggatcca aggccgcaac caatttgtct tccaacataa tcaggtaagc aaagccacct
     7621 ttaacagtat tgagagcttc cttaattttt cccataaaat ctggattgtg actgcggcga
     7681 atcaagtgca tcaaaatctc tgtgtctgag gaactagaaa agattgaacc gttcttttcc
     7741 aactcagcct tcaagctgac tgcattggtc aaatttccat tatgtgccaa acccacctgc
     7801 atatctgcaa aatcaaatag gaagggctgg atattatgga tagatgctga acctgaggtt
     7861 gcataacgaa catgaccaat agcagccgtt cctgtcaagc gatccaaatc ttctgatttt
     7921 ttaaagactt ccgcaatcaa gcctgtatcc cgatggcgac gcaagaaacc tccatcgtta
     7981 gctaaaattc ctgctccttc ttgccctcgg tgctgcaaac tgtggaggcc aaaataggtc
     8041 acctgagcag cctgcggatg tccccaaatg ccgaaaacac cgcattcttc gttgagtgat
     8101 ttaacttcgt atgtcatatt tattttcctg taaaatagcg aactgctgaa acaaagagct
     8161 cttggtcttt cttacctgga atattctgga aaagaccgtc ctcataacgc tccgaatgcc
     8221 ccattttccc gataatctga ccgttgcgac tggtaatacc ttcaatcgca tggctggatc
     8281 catttggatt gtacttagaa tccatgcttg gctgacctgt aaagtcaacg tattggctga
     8341 aaatctgccc attgtcccgc aagacagcga attcttcatc cgtcacgaca aattttcctt
     8401 ccccgtgtga aactggtata gcgtgaatgt caccgacttg gacacctgcc agccaagggg
     8461 agttgacatt ggcaatccgc gtttccacca ttttggcaac gtgctggtta gcatcgttgt
     8521 agaagagggt cggactggtt tctcccgcct cctcaaagtt tccatacggc agcaagcccg
     8581 atttgacaag ggcctggaag ccattgcaga taccgatgat aaggccacct ttttcgataa
     8641 attgatcaat agcagagcgg accttggcgt ttcgtaagat ggtcacgata aacttggcag
     8701 acccgtctgg ctcatccgca gctgaaaatc cacctgcgaa gaaaagaata ttggccttgg
     8761 taatattgtc aaccatagtt ttaaccgagt tttcaatgct tgctgcatct aaagtcacaa
     8821 atggcaccag attaaccttg gcaccagcct gttcaaaggc cttggctgag tcatattctg
     8881 agttggttcc tggaaagact gggatgtaaa caagcggaac atcaactctt tccttggctt
     8941 gtataactgc tgaactggta attgcaggaa catcctgtaa gtctgtagcc tgttcaaatt
     9001 ctgttgggta aacttcttct agtttgcctt caaaggctgc ctgcaagtcc tgtcccgcaa
     9061 gattgacacc attgacaact agtgtaaagt ctgttgtcgt ttgaccgatt ttcacagcat
     9121 ctggaatgtc ttctttcgat gtgaaaacaa agccacctag ctgacctgtc aagctagttt
     9181 caaggtctgc aagctcaact cttgctccga cttggttacc aaaggacata agggctagac
     9241 tttctaagac accaccatac ttgactgcgc tagcagccgt aatcgcataa tcgctctgcc
     9301 atttttcaaa agtctcaaaa ttagacttga tcaaggcaaa atcaatgtct tctgacaaaa
     9361 tctgacctgg taagtagtaa atgtactcgc cagccgcctt gaactcaggc gagaggacct
     9421 tacggctgtc tgccgtggtc acaccaaagg caaccagggt cggcggaact gtcaaatcct
     9481 caaaggtacc agacatggag tccttaccac cgatagacgg caaaccgagc tgaatctgag
     9541 cctcaataga gcccagaagt gctgctactg gctgaccgaa acgttccgcc tgcttgtcca
     9601 tccgctggaa atactcctga taggagaagc gagccttgga ccagttagcc cctgttgcca
     9661 ccaagcgagc tgtcgcttcg atgactgcat aggctgctcc gtggtaaggt gaccagtctg
     9721 ccagataagg atgatagccc tgagccatga cagaagccgt cgtcgtcaca ccctgttgga
     9781 caggtagttt ctgtaccgaa ctttctgtcg gtgtcaattg gtgacgcccc ccgagagggt
     9841 gattaacggt tgaacgacca acagatgagt cgaaaatggt ctgcaagcct ttctgactag
     9901 tatggttgag atctgaaaga agatttttca agtcctcttg tagcgtttca gcagatgttg
     9961 tacgtgtttc tggcaagttg acagcactgt caaccacctt agcatccacc accacgcgca
    10021 caccgttggt gtcaaggaag gaacgttcca aatcaacaat tgtttgacca ttccaagtca
    10081 tgaccaagtt tggcttttca gtgactttgg ctacaacaac cgcatggata ttttcctcac
    10141 ggcaggctgc gataaaggta tctacgtctt ctggacggac aactacactc atccgctctt
    10201 gtgattcaga aatggcaatt tccgtaccat tcaaacctgc atacttgagc gggaccttgt
    10261 ccaagtctat ttcaagaccg tctgccagct caccaatggc aacgcagaca ccgcctgcac
    10321 cgaagtcatt ggatttttta atgaggcgag tgacgtcacc atttcggaac aaacgttgga
    10381 ttttgcgttc ttcgatagca tttccttttt ggacttccgc tccagccgtt tccacagact
    10441 caactgtctg caccttagat gaacctgttg ctccaccgat accgtcacgg cctgttttgc
    10501 ctcctaacaa gatgaccaca tcgccagcaa ctggtttttc acggaccaca ttttccttag
    10561 gagcagcacc gacaacggca cctagttcca tgcgttttgc gacaaatcct gggtggaaat
    10621 actcacgcac gtaagttgtc gccaaaccga tttggttacc gtatgaagaa taaccatgtg
    10681 ccgctgtttt ggagatgatt tgctgcggca atttccctga gcgagtagcc gttagaggtt
    10741 gggtaatatc gcccgcacct gaaattcgca tggcctgata gacataggaa cgacctgaca
    10801 aaggatcacg aatggctcca cctatacagg ttgcggcacc accaaaaggc tcgatttctg
    10861 ttgggtgatt atgggtttca ttcttgaaca tgaggagcca cggctctttc acgccgtcca
    10921 catccacttc aatcttcacc gagcaggcat tgatttcatc tgacacttcc atgtcatcca
    10981 gacggccatt tgcccgctca taacgaccaa aaatcgtcgc catatccatg agcgtctgtg
    11041 gcttatctgt ccgacctaat tctgtccgca tcgccaggta cttgtcataa gttgcctgca
    11101 attgcttttg gaattttgaa gctgaaaagt caatagactt gagctccgtt tcaaaagtcg
    11161 tatggcggca gtggtcactc cagtaagtat ccaagacctt gagttctgtc tcagttggca
    11221 ctcgaccgat tgatttgaaa tagtcttgaa tgaagagtag gtcttccact tccatagcca
    11281 agccagcctc acgcttgtaa gccgcaaatt cctctgcccc aaagttatca aaaaagtcca
    11341 agcttggaat agtagtatcc gaaactgaaa actcctgagc caccaaagga gcgtccatat
    11401 ccttgaatcg cgaatccaca gggttgagca aataattctt gatggcagct aattcttctt
    11461 cctgcacatc accgttcaaa atatagagct gaccagtatt gacacgcacc tcctgacgac
    11521 tgcccaataa gagaagggcc tcctgactgc tggcagcccg ctggtcaaac tgcccaggaa
    11581 gtgcctcaat cgcaaaataa acagcccctt ccaagcccag ctccgcttcc gacaagacct
    11641 tatccgtcac ctgctcggta aagatatgct taatagcttg ctccagcaag tcctcctcca
    11701 aatgaaagac atcataaacc tgcaccagac gtacactcgt caaacttgtc aactgcaaat
    11761 tatgagtcaa ctccttgcga agagcctccg ccttaatctg aaaatccgcc ttcttctcaa
    11821 caaaaatccg cttcgccatt ttttccaatc cttacttcac ttcttgtaat tttgccaata
    11881 cgacctcgta aacctcggtt aactccccga gcccccgacg gaaaacatcc ttgtccagat
    11941 ggttgccatc cgcatcccac aaacgacaat tatcaggaga aaattcatcc gccaataata
    12001 tctgaccagt agagtcaatc ccaaattcta gcttgaaatc caccaaattc agcccaatct
    12061 gagcaaacaa gtccttcaag aacgcattga ttcgtcttgt ttcttccttg atataggcaa
    12121 tttcttctga actagctaga ttaagaaaag caatatgttc ttcgttgata aaaggatcgt
    12181 ccaactcatc ttttttatag taaaattcca cgataggagt aggtaagact atcccttcct
    12241 ccacaccgaa gcgttttgag aaagacccag ctgtcacatt tcgcaaaaca acctcaagag
    12301 gaataatctc caccttctta ttcaactgct ccgtatccga caaacgcttg ataaaatgcg
    12361 tcttgactcc agcttcattc aacttttcaa aaatcaaaga tgaaatcaga ttattgagtc
    12421 gccccttgcc agtaatctgt tctttcttgc caccattaaa agccgttgcc tggtccttgt
    12481 aaactgcaac aatctggtcg ctgtcagccg tagcgtagat gtctttggct tttcctgaat
    12541 agagaaggtc tgttttcatt gaaatgttcg cctttcataa aatattctag tcttttcgtt
    12601 tattctatca cataacattc gcgtaaaaaa gtatttaacg gtattttgta aaaaaataaa
    12661 gaaaaacgcc cgtaaactac gaacgtttct gtaattcttc ataaataaaa tccacaatat
    12721 cagacaaggt ttcaaagcgc tcaatagccg catcaggaat atcgacacca aactcgtctt
    12781 ccaaagtcaa aacgaattcc ataatttcca ccgaatccgc tgcaatatta tcagccaaag
    12841 tcgactcagg ttgaacttta aaatcctcac ccttttcatc ttgaatcaat tcaacaaccc
    12901 gctgataaat ctgctctcta gtcatgactt tcctccacta ctgaaaattt ggcaaccgat
    12961 ttttcgacaa taccagcctc caagatagaa cgcgtctgct taatagtata gaaaatcgac
    13021 tgggcatcgc tggaaccgtg agccttgata actggagctt tcagaccaag caagacagca
    13081 ccgcctgctg ttttataatc catagccccc aaggcctttt tcaaggttgg tttgaccatc
    13141 aagcctccca atttagcacg cagaccgcca tttttgatag agcccgtcaa ctggccaacg
    13201 atggattttg cagttccctc aatggttttc agcacagcgt ttcccgtgaa accatccgtc
    13261 acgaccacat ccgccacgct gttgagcaac tcacgcgcct ccacatttcc gataaagttg
    13321 atggacttgt cttccgccaa gagtttataa gcctcttggt gaactggcgt gcccttggta
    13381 tcttccgtac cgttgttcaa aagtcccaca cgaggttgtt tgaccccacg cacatgctcc
    13441 gcgtaaaatg agccgaggat accatactga tagaggtgat gggctgtatt ttcagcattt
    13501 gcccccaaat ccatcatatc aaatccctta ccgtccatag taggaagagt ggacataaga
    13561 ccaggacggt cgatgttctt gatgcgaccg acgacaaaga cacctgccgc caacagagca
    13621 cccgtatttc cagccgataa gaccgcatct gcttgaccat ccttgacagc cttggtcgct
    13681 aggaccatcg aagcctcttt tttccgacga atagccttga caggctcatc atctgaattg
    13741 attttctccg tcgtatggac gatgctgaca cgctctgttg ctgtcaaata ctgcttgatt
    13801 ttagcctcat cgccataaag ttgaatttca atgtctggaa aggcagccaa ggcttgattg
    13861 acaccttcta ccactgcctg aggggcgtgg tccccaccca tagcatctac tgcaatacgt
    13921 ttcattctgt ttcctcattt tctgttcctg gtttcataat ctgcccccaa gaagacaaat
    13981 catctataaa tttcttggat ttcaagtgaa tccccacata ttcctcgtac agctggtcaa
    14041 taaaaagccg taattttcgc ttcatctcag gcttgatgga aatggtttct agctcatcaa
    14101 aggaaatagc ctgaaattga tcaagtagat agggaacatt ggggtccaaa taagcccgtc
    14161 gctcatcttg ttgatagtgt tgcggacaca agacaccgct atacttgtaa gaataatcaa
    14221 aaggcagacc aacccgatga caaaaagcac actcgtgaaa attcagactg accccaaaac
    14281 gtcccaagag ctgaatttca aagatattgg tcaagacttc ataatccaaa cccgactcca
    14341 tcaagtccaa ggtcttgacc aaaaaagaaa agagagctgg atcataaacc ttatcctgca
    14401 aggccgcatc tgccaaggcc aagatatagg tcgcatagct gagtttgaaa atatcagcat
    14461 tgatcgcctt aaaaggctgg acttgatgaa aatcctcaat ataagacagc ccatcatcat
    14521 tgattttgac gataaaatcc gcataggtca aaggctggat agaagctacc agcctgaact
    14581 tagaggcatg tttcacgaaa aacattcgct tgccagcctt ctctgtaaaa atcttgacca
    14641 gcttatcatc ttctcgaaaa ttccgattat ataggactaa tcccctggtt tcaattcgtt
    14701 ccattttctt ctaaatattc cttcaaacga gccatagctg tttgaatctt ctccatactt
    14761 gctgcgtagg aaattcgcac atagccttct ccatactgac cgaaggctgc gcctggaata
    14821 aaggccaccg ctttctttct cgcaaagtct tgcaagaagc taaaggaatc ttgattataa
    14881 cccgcaggga tttttgcaaa gatataaaat gctccatcag gcttgataat tttaaagccc
    14941 aagtccgtca tcttctcgat gatgtaatcc ctacgcttga cgtactccgc ccgcatcgga
    15001 agagcatcat ccttaccgtt tttcaaggcc tcaaccgcac catactgcat agcagttgac
    15061 gccgctgtca caagatactg gtggctcttg atgatttgag cgataatcgg agcctgactc
    15121 ataatcaagc caatccgcca gcctgtcata gcatgggact tggacaagcc ctgaatcaaa
    15181 atggtctgct ctggcaaaaa ctctgcaatt gaagtatggg gctgaccagt gtaggtcaac
    15241 tccgcataga cctcgtctga taggacaaag acaggatact tacgcaagac atctgcaaag
    15301 gcccgaattt gctcacgaga gtaggtcaca cccgttggat tggcaggata gttgagaatg
    15361 acagctttta gcttatcacc ttgctcaata atcgcctctt ccaacatctc tggcgtcaag
    15421 acgaaatgat tggctgtcgt atcgatttca acaacatcag ctcctaccat attaacaata
    15481 ggctcataac caggataggc aggggcaggc agaagaactg tatccccagc ctccaaaata
    15541 gcaactaaac tcgctgacag agcttctgtc gcaccgattg tagagaggat ttcattttct
    15601 ggattgtagt gtaaattata tttttcagcc acaaactcag ctgctgcctg acgcaactcc
    15661 aaaagaccag ccattccagt ataataactc ttgttagcat cgatagcagc cttagccgct
    15721 tctttaacat ggtcaggcgt tgtaaaatca ggctctccca atgttagttt caaaatcccg
    15781 ggaacatccg aaatagactg atcaaactga cgaatcatcg aaacctcaat ccgattcaaa
    15841 ttcttattaa aacgatttaa taaatccatt ctgccacctc aaaaacatat aaaactatta
    15901 taatacattt tgaaaataaa tgtaaaaaag aagagtcatt tgactcttct catacctatt
    15961 taacacgact cgcctcaaac aaaggagaca aaggacgttt ttcatgaata cgaataatcg
    16021 cttccgctaa taattctgcc gttgaaatat gttcgatttt atcgattaag cgatcttctg
    16081 caatttcaat tgtatcaaga acaaccaatt tcttaattgc tgacttacta atgttatcca
    16141 tagcaggtcc tgacaatact gggtgcgtac atgaagcata aacagctgtt gcccctgcat
    16201 ctgccaaagc atccgctgca tgacagatgg tacccgcagt atcaatcata tcatcaatca
    16261 agatacaagt tttatcctta atatcgccaa taatgttcat cacttctgat gtattcatct
    16321 tatcaacact acggcgttta tcaataatag caatcggtgt cttcaagaac tgtgctaact
    16381 tacgggcacg tgtcacacca ccatggtcag gtgatacaac aacatagcca tcacctacca
    16441 taccacgacg ctcaaaataa tccgcaatca atggagcacc catcaaatga tcaacaggaa
    16501 tatcgaagaa tccctgaatc tgcgcagcat gcaaatcaat tgtcaacaaa cgattgactc
    16561 ccgctgtttg taacatattg gcaactaatt ttgaagtgat tggctcacga gcacgagctt
    16621 tacgatcctg acgtgcatag ccatagtaag gcattacaac gtttactgat tcagcggatg
    16681 cacgtttaag agcatcgacc ataatcaaaa tctccattaa attatcatta actggtgagc
    16741 tagtggattg aagaatatac acgtgagttc cacgaatgga ttcctcaata tttacctgaa
    16801 tctcaccatc tgaaaattga cgaacacttg attttcctag aggaattcct atttttttcg
    16861 acacctgttc agctaacttc tgatttgacg aaagagcgaa caattttaag tcagtaaacg
    16921 ccatgacagc ctcctatata tttctacctt tactatttta accctttttc cttcattttt
    16981 caaacaaaaa tagagcgcaa atccacacgc tctatttgaa aatttcttaa tatggagggt
    17041 aaatgtagta aactgcacct tcagatgtag ttgtaggatt aaaccaacca cggtggttac
    17101 caatataacg acgacccatg tagtttgatt caacaacttg gatacttgtt gaagattgaa
    17161 cagccgtaac aaccgctacg tgcccataat aaccacctgt ccaaacagca atcgcaccta
    17221 cttgtggagt agaacctgta ctaaaacctt cagcacgtgc tgatgctaac cactgtttag
    17281 catctcccca gtaaggacca acccatgaaa gttgagattt aactccccaa gtacactcac
    17341 caattgggta agatgaagcg tcataacgcg cattatttgc tgccgctgaa ctacctgaac
    17401 ctgatgatat agacgttgta ggtgtgctta ccgttggtgt agattgtgat actgtcgcaa
    17461 ccgtttcagt cactgtagtt tctactggcg ttgacacgac tggtgctgat actgaggcta
    17521 cttgttgctg tgctagagct gcctgttgtg cttgatactc cgcttgacga gctgccgctt
    17581 gacgagctgc ttcttctgca gctgcctttt gcgccaacaa tgaatttttc tcatcttcag
    17641 cagtagcttt ctgcacagcc aaatttaact tagcagcttc caattcagcc tgacgcactt
    17701 gcaatacttg ggcgtcatct tccaattttt ggcgattagc tgccaaagta gtgattgcct
    17761 cttggtttgc cttttgtttt tcagcaattg cttccttatc agctttttgt tgttccaaca
    17821 tacggttatt agctgaaaca atctcacgca ttgcattaac acgagaaaca gcatcaacga
    17881 ttgattttga atctaaaatt gtattaatat agcttgaagc agagccatca acttgagcac
    17941 tacgcgcctg ctcctttaaa gcaccatcac gtgacacaat atcagctgac aaacgctcaa
    18001 tatctgccgc caatgcctgc gattctgctt ccaaacgagt attttcttct gttaatttcg
    18061 cctgttcact aacaattgca tcaacttgtc cttgaatagc atcaacttgt tgttgagctt
    18121 cagcttgttg tgctgtcaac tcactaatct gttgattttt tgctgcaatc tgactatcta
    18181 catcattcgc actaatcaca gctacataat tagcattaga tagaacgact gtacttaaca
    18241 taattgtagc caagattttt ttcttcatat ccgaacataa ctcctctata ctttctgact
    18301 ctctcatttt atcaaaaaaa ttgcgtaagt atattacgca attattacat ttctatgtct
    18361 tgtttgttat tccaaataaa cgctcaaatg acggttgtag tacgaaaaat aagaccaaat
    18421 tgaatagtag acttggaagt aatttattaa aaacaaagat aaacacagac aagtttgtta
    18481 tatgaaaaat gcgagcaaat gagtaactaa taaattcaaa ttgaaaaata gctactagta
    18541 aaatcaaaat attaattcct cgcttgctga cagcaccttg aaagaagaaa tagatgcaat
    18601 ataaaactaa aggaagagtt gtagtagcaa taccaatcag attaagataa ctaatatcat
    18661 ataccaaacc tagcaaagta aatatgaata atgaaaaacc aagagataca tagttagcat
    18721 aaaaaatagc taacataagt accaaatgac ttgaaatagt aaataatccg accgaccaat
    18781 ttgttaccaa cgttgaaatc tgtccatcaa gtaataaaat aaagaacaag atgggaaaca
    18841 tgaatatttc tatcatttta ttgcgcattt gtttgaccta ccactaaaac cgaataaata
    18901 tttgaaaaac tagctgtcgg ctcaacatat acttctctat ttaaactgtt actatttgat
    18961 ttaaccgata aaactttacc aatttggata tttgccgaag tcgcaccagc caaatcactc
    19021 gttacaacat tgctccccac tgcaatttca tcagctgagt tcaactggtc aatgataaaa
    19081 ctatttgtat ctgcatcata gcccgataaa ataccataaa tttctttaga atcaacagaa
    19141 attttcacag gcaacttcgt gaattcatcc gaattcgtaa ataaggtaac aaccgccgaa
    19201 tctgaactca atgaactcac gattccaact aatccaccat tagcaaccac aagtgcatta
    19261 gatgtcacac cactagtctc accaatatta attgcaatat gctccgacca cgctgaagga
    19321 gtcctcacca aaactgatcc tggaataagt tgtttttcag gaaaatcaga taccacacct
    19381 aaactgctac gaagcgatgc attctcttct ttcaagctag tattttcagc agccatccct
    19441 tcaaggctca taatagcttc ctttaattgt ttattttcct cgtaagcgtt caccaaatct
    19501 gtcaagacat ctttctgctc agaaaaaaat ctagtaggta ctgaaataac cgattgaatt
    19561 ggcgttacaa caaccctaac gatattattt aaatatggta cctgtaaccc cttagagaaa
    19621 gtcacaaaca aaagagaaaa tgacagtaat aaaaagatag aaacaactac tactaatttt
    19681 gaaaatttat tcataatata tcctcaccaa gatacaataa aacgagaata tcaagcgata
    19741 atctcgttca ctacggagaa taagggattc gaacccttgc gccagttacc cgacctaacg
    19801 atttagcaaa ccgtcctctt cagcctcttg agtaattctc catcaatata a
//
LOCUS       DASFRC010000022        19452 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.022, whole genome shotgun sequence.
ACCESSION   DASFRC010000022 DASFRC010000000
VERSION     DASFRC010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 19452)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19452)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19452
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.022"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(183..1835)
                     /locus_tag="U1087_000565"
                     /pseudo
     CDS             complement(183..1835)
                     /locus_tag="U1087_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004183168.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
     gene            1978..2907
                     /locus_tag="U1087_000566"
     CDS             1978..2907
                     /locus_tag="U1087_000566"
                     /inference="COORDINATES: protein motif:HMM:NF022440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2806 domain-containing protein"
                     /protein_id="HEM4755073.1"
                     /translation="MFDLSFLAQEPIVSIAGSSVTTAAINFLGYYYGERLQFNKMKQD
                     LIAERISNSNSTIPAVDIARCRNIKEIAQIADSLDDFSRTNPVEFSSEWFARFFDSAS
                     LVSDRDMQTIWAKILNGEAEEKSKYSFRFIESMRLLSKIEAEIFLKISKLAVQTPLGG
                     IHIISPENEEMLEIYRQYGIDEDELLLLEECGLINMGVEATHELELKRDLSGFFNDQY
                     FVNFSINPESKIKTFEFHSYSLTRFGSQLYELIEETTSADFILDLAQTLKSQLDGEII
                     VSVHNYILEEGIDGRISMSLDTDSVDISNKNEP"
     gene            complement(2926..3168)
                     /locus_tag="U1087_000567"
     CDS             complement(2926..3168)
                     /locus_tag="U1087_000567"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755074.1"
                     /translation="MQLLIKLTHIFIEKMDAIKTHYKLKTEAQEKYMDEVIKEFGELY
                     NRGCNGEIQLPDEPLVKFAKAKNIKQVEKLIVKSKN"
     gene            complement(3383..4165)
                     /locus_tag="U1087_000568"
     CDS             complement(3383..4165)
                     /locus_tag="U1087_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-relaxation family protein"
                     /protein_id="HEM4755075.1"
                     /translation="MRLTKRDYEVLSLLNRCRYATTKQLVELYFRENKPKTATRRANL
                     LAKKLRNLGLIHHLERRIGGVRAGSGSYIWHITHKGIKVLREIEPSVKLKLKNRYEPT
                     RNHLKHQLFVTQLFVELHRLHSERTLFLEDFSFEPRCWRSFATLFSHFTLKPDAFVRL
                     TIGEFEENYFFEADNATEHIGRVIAKCKQYIAYFNAGIEQRENEVFPLVVWIVPDEKR
                     KLGILNRIKEDLDAYWELFEVVTLDEFPEFIQGGRDGARTET"
     gene            complement(4152..6278)
                     /locus_tag="U1087_000569"
     CDS             complement(4152..6278)
                     /locus_tag="U1087_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system DNA-binding
                     domain-containing protein"
                     /protein_id="HEM4755076.1"
                     /translation="MKRPTHLSWQSMDWTRPFDFETICNFTTQLNGYSRRQPFIWEIR
                     LTQEKASHLIGADSIDLRFLKEMMTSHNPVRFEKTKRAKVTSAYSITLSKNHYALKTK
                     EVDNLVRSFLSQAGTLKRNEEIVLQLVVGKSSSPKPILKDLGNPDATLWQKLTGNIPP
                     LSSDSKALMREKLHHSQFQISLRLGIRTDTKAREIQLLKSILASLRILERAGAKFSAK
                     PTSCEKINHGHLPWHFQTILSSIELASLFLLPAGDAQYAGVSSLSPKTILPPIGFSQN
                     TKRLFGYSLEKFPRFIGIPAREGLSHTWLLGGTGSGKSTAMLNLILADARENRSAVVI
                     DPKATLASDVLERLPKERDKDVVILDPSQNGQSVSINPFDLVKFGVPAELVADMLLGV
                     FQEIFEGSWGIYTQDILSHSFHTLAKIDGLTLIDLPKLLTNKVFRHDLLKNVLDPFLL
                     DFWQGYDTLSDSARQTMISPVLNKFRSVLLRPALRAALGETSGKFSLKDIFDKPRLLL
                     VPLNKGLIGAENAKFIGAILLGCLYQLTLLRAKETIRKPVFIYIDEVADYLKLPVPLD
                     DALSMSRSLGVGYILANQFSKQLPKQLRESIYANCHNQIIFGLSMNEAKELAGLVPEL
                     SAEDFYKLPLFQVYTKVPIVKNTFKWLSAKTMPAPPAFRKKDEIYGESFKRYGSAFPE
                     QQSSQPASKPIYGIGRKKKEVSDETN"
     gene            complement(6447..7061)
                     /locus_tag="U1087_000570"
     CDS             complement(6447..7061)
                     /locus_tag="U1087_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytosine methyltransferase"
                     /protein_id="HEM4755077.1"
                     /translation="MTKYQDTINQHSPKKFKTILADPPWDVAQKGKLGAIRHYNLMTI
                     EEIKKMPIASLAEDDAHLWLWTYPAALEQSFEVVRAWGFEPKSIFTWVKPRLGLGNYL
                     RNCTEQVIFATRGKTPIKFKGQMNWGMFPVQDHSHKPEEVYSIIERCSDGDYLELFAR
                     RPVPSDKNWYVWGNEITSDIIIPNYPVPKYSKDVRDFRKVGQDE"
     gene            complement(7233..7472)
                     /locus_tag="U1087_000571"
     CDS             complement(7233..7472)
                     /locus_tag="U1087_000571"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755078.1"
                     /translation="MDWNSIALVLLSALCILGLALITLVDEEEEPQESETFDFSTEEE
                     LALAEFLETRQAINEDFLVAQKKLLETLNHERRKF"
     gene            complement(7482..7748)
                     /locus_tag="U1087_000572"
     CDS             complement(7482..7748)
                     /locus_tag="U1087_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755079.1"
                     /translation="MPQLPQKYQTSEALPASAFSPQKMAIARNLSQDMAIVQANELLA
                     QDILNKVASLSELEAQILAHNPQAQQRTDFVIKAFTYVSARRFK"
     gene            7863..8921
                     /locus_tag="U1087_000573"
     CDS             7863..8921
                     /locus_tag="U1087_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004183156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755080.1"
                     /translation="MFTLQNLLHLLEKENRGWKNPTTMAKTILMALTNYNYPSDVASK
                     VFSGVNQGRNIFFDIKQLIDDEDFETYLASTEFRLCNQNFRNGNFDSTKMVEATHNLL
                     KESTNLNQDIYQGLLHSYCKNKDNRPYLFLSECFYYALACCHDKTVSYKIASISEVKK
                     PQTLPVWDGNLDDILSEESLPPKFWTTVEQMTAKEIAVFKTLASLAIIDEDEEYYLYA
                     PVTDEEIQLYKDFSIGDAEFLLMEEFGLINIGARIDNSVSVEADPAGFQNDNLVLMFT
                     TQYEPFDITYKSYTFTSVGSKLLDILAIETDDKFFQRLSKLFVKQHKNLLIEFYLVPI
                     EAMDGVESIEELEEFRLQ"
     gene            complement(8959..9327)
                     /locus_tag="U1087_000574"
     CDS             complement(8959..9327)
                     /locus_tag="U1087_000574"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755081.1"
                     /translation="MNDYKAKQELITLGEEIRQHTLWGLIPEIPKWDCTELGAYLPAI
                     SLPAFIDRLTVKNGVMSYAVTSFEQFTKHTEIYEINATLWEFIVKLQAVIDSQTEKEF
                     CQNLLEVLRIEVYFVKEWNN"
     gene            complement(9915..10217)
                     /locus_tag="U1087_000575"
     CDS             complement(9915..10217)
                     /locus_tag="U1087_000575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755082.1"
                     /translation="MFYSESLSNFDLSSNVQSWEALDFNKVPGVQEKLDEIEADKIAS
                     ETEESTSAEESEDTQYIDEESTETKSNSVNGMVVVVGILIVLSAISFIAFSNKRNK"
     gene            complement(10267..11034)
                     /locus_tag="U1087_000576"
     CDS             complement(10267..11034)
                     /locus_tag="U1087_000576"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755083.1"
                     /translation="MKKIQKILASIIAFYVLLLTLSCNTVFAEPTPLSLYEDNNIRFA
                     PLATGAENADNLYGIIGNRDRKYDDDVRAFLLKGVMGSTVKDLVIYLKPGESFTIDSP
                     TIPGRTINSVMHDSVRGNQFVTIDDKIPLPLTISYDDLVERGPFNNDEQIVSYSDRYI
                     LRGENDPRFEDPFIHLDGYYVLDYDGSKFNTDFALRVFDSFSWGYAGGAQSVPFKMYV
                     LEDEVLPLPESLYGQTLTGIAFVRSKYAYAVTDVYKK"
     gene            complement(11103..11273)
                     /locus_tag="U1087_000577"
     CDS             complement(11103..11273)
                     /locus_tag="U1087_000577"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755084.1"
                     /translation="MNAETLYVILVIGLIIGAYILKHILMKGIYHLEDSYKNKRNRAK
                     QNSTNSDKREKL"
     gene            complement(11283..11789)
                     /locus_tag="U1087_000578"
     CDS             complement(11283..11789)
                     /locus_tag="U1087_000578"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755085.1"
                     /translation="MEKIIIACIIGIFIYCIRNFFIGRRRDELLNQGAIESRDKLFLS
                     QEHCFFSSKISSVQEILSVLDMGSFKDNHIQLLNITDDGDAVFKITNNIIVKESYVLA
                     LLASEIRNEEKAYVLIITNTYNCDQSVIENPDNILLTQVERAIKNLIAMQRLNVTSSN
                     TIQQNKII"
     gene            complement(12000..12677)
                     /locus_tag="U1087_000579"
     CDS             complement(12000..12677)
                     /locus_tag="U1087_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HEM4755086.1"
                     /translation="MKKIIKQYQEKGSVIIGYARVSSTDNRQELGLEVQKEALNFCDK
                     LYIEKETGGNQDRLQLQKALKLAKECAESDIETSFVVYKLDRLTRKMLHLSAIISELT
                     SYNIRLQSIHGQIETDSLTGKFFCLMLGYVAEWELQAISERTKDGLRKARERGGKLGN
                     KGISKSKEKQVIISYLEEETTVRKIANQLNISTATIYQVLKRNNITFRSQKAHNSLTK
                     EKQIDKL"
     gene            12846..13889
                     /locus_tag="U1087_000580"
     CDS             12846..13889
                     /locus_tag="U1087_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002266164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM4755087.1"
                     /translation="MKKKQVINLIRYFTEGNTSGFRTEAYEIAKAFDKTGDHQLAEYI
                     IAMLSENNTFIPQVSEEKFESLRKIQLTNFNPLPLPEAISSDVIGVVNAVRRNIGVDK
                     FLFEGAPGTGKTETVKQIARLLQRELYVVDFETIIDSKLGQTAKNIANLFKEINSFTH
                     PEQTLILFDEIDAIALNRLDNNDLREMGRATTAILKGMDTLRDGIVLIATTNLFSAFD
                     KALIRRFDAVINFNRYSQEDLLVIAESMMSTILNDSKHSGKNVRLFKKIVALCSPIPY
                     PGELKNTLKSAVAFSSLTDKFDYLRRLFSIFYKPVDNTTLKELKELGFTVREIEILTG
                     ISKSQTARELKED"
     gene            13895..16120
                     /locus_tag="U1087_000581"
     CDS             13895..16120
                     /locus_tag="U1087_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002266163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family peptidase"
                     /protein_id="HEM4755088.1"
                     /translation="MNDLLQLKGRFEQRSSSSKPGAPKLLSNKVVTINELVELRNQLE
                     SLRQYWETVTYFEGAFITIVYKDIVAKSRRAKELLKKNSRTFPNDLIVGARYIEGDKI
                     RHAITYYVDNNTIVETINKLELAIEILDEEFSGKITTEVVDAINAKLYPYGSSKLSKT
                     TFLQVIVDVSSIEEFTIPEANIDSGHRSIVSVFKTELQTSELLRRLGLDISIGRVIDD
                     STILLTPDEIALIMEKAPYLISMATVDLSQLDILDFDEANSSQILSIPDPTNEPIIGV
                     IDTLFDESVYFSKWVKYEDRVDSQIEKMSSDYEHGTGVSSIIVDGASINPDLDDNCGR
                     FRVKHFGVATSKQFSSFTIMKHIKEIVAENREIKVWNLSLGSALEIHKDFISPEAAIL
                     DKIQYDYDVIFVVAGTNITSDSNSPMLIGAPADSINSLIVNAVNKENIPASYSRIGKV
                     LSFFNKPDVSYYGGDGRDRIRVCFPLGEGFVKGTSFAAPWITRKIAYLIHKVGLSREV
                     AKALVIDSAISWSQNMTSSNVIGYGVVPQDINEVINAKDDEIKFILSGESLKYDTYSH
                     QLPVPIVNGQHPFVAKATLCYFPKCSRNQGVDYTNTELDIYFGRMLPNGKGIKTINEN
                     KQSDNVALHEEDAREQYRKWDNVKSIIEYVKPRGRAKKAYDNGLWGFSLKTKERLNTG
                     DGEGLKFGIVVTLKEINGINRIDDFINQCSMRGWLVQRIDVEELIQVHSIAEEEISFD
                     E"
     gene            16230..16670
                     /locus_tag="U1087_000582"
     CDS             16230..16670
                     /locus_tag="U1087_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003100713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755089.1"
                     /translation="MESFTIEFEADSEGYFTYECPFCEEQFKLLASEVQDEDFELEEL
                     FCPYCGLVDGADKFYSKEVLAYIQNLAEEWMINTINKSLGSIKSSKNFKVDFKKIKHN
                     TIAKPSEIDSVEEVFTCGVCEKHEKVLFSAGASKVFCAYCGGDL"
     gene            16667..17491
                     /locus_tag="U1087_000583"
                     /pseudo
     CDS             16667..17491
                     /locus_tag="U1087_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003100714.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            17580..>19452
                     /gene="recG"
                     /locus_tag="U1087_000584"
     CDS             17580..>19452
                     /gene="recG"
                     /locus_tag="U1087_000584"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HEM4755090.1"
                     /translation="MKRLCDELSVLPGIGPKSAEKFLKINIQNINDLLTYYPFRYEDF
                     ESKSIYDLQDGEKAVVVGEVVSPANVQYYGYKRNRLRFSMKQGEVVLAVSFFNQPYLA
                     DKIVLGQDIAVWGKWDKAKASLTGMKILAQVSDELQPVYHVAQGISQVNLVKAIKTAI
                     DQGYLHLLEENLPSVLRERYRLMNRREAVFAMHFPTNLEEYRQALRRMKFEELFYFQL
                     QLQMLKANNRDISNGLKIAYDADRLAMQIRQLPFVLTDAQSGALAEILSDMKSYGHMN
                     RLLQGDVGSGKTVVAGLAMFAAVTAGMQAAIMVPTEILAEQHFESLRQLFPELSVALL
                     TGGMKAAERRTALEAISSGQVDIIVGTHALIQESVTYHKLGLVVTDEQHRFGVKQRRL
                     FREKGDNPDVLMMTATPIPRTLAITAFGDMDVSIINQLPAGRKPIITRWVKHQQLATV
                     LDWLEKELKSRAQVYFISPLIEESEALDLKNAVDLQSDLQAHFGEQVTVDLLHGKMKN
                     DEKDAIMQAFKERKTNILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGR
                     GHKQSYAVLVANPKTESGKERMKIMTETIDGFILAEADLKMRGSGEIFGTRQSGLPEF
                     "
BASE COUNT         5797 a         3366 c         4052 g         6237 t
ORIGIN      
        1 ggaggctgtt taggtctctt ttttgttttt tgaggtgaag gggctttaat ttggctcctt
       61 tttcttttct tgttactttg tctattcatt gtttgttgat ataatatcca cacctcaccg
      121 agcagtctgt tagttattat tttacgagcg gattttagtt cgctcgtttt ataattctcc
      181 gaaaatcggt aatgcagttc aatagtgact tgacggtttt tgctacgtcc agtcggttgg
      241 tgaatgacga tcttatcaat cagttcattc actagctgtg ttgtcaggtt ctcgagtttt
      301 gtgtgttggc gaatagttcg cataaacttg tcaatgtttt ccgcagattc ggtctgacta
      361 accagaacct cttgaaattc ctgaatttgt tggctgagtt cagcttgctc actctcgtaa
      421 ctgtccacca attttctaaa tctctcatcg ctaatctcgc ttaacagttg cttttcatag
      481 agcctttgga taattgtgtc taactccagc gaccgttttt tggctttatt taactgtttg
      541 cgtaagctat cctgcttttt actctctcga atgtcgaagc gagacttcag ttttgcaagc
      601 aattcttcct cattaaatcg aatagaagaa attagttgct gaaggtcgcc taacactaat
      661 tcttccagag tttctttgcg aaggtaatgt gaaccagaat aagtatcgcc agctcgacga
      721 taatggtaac acttgtagtg gtctaggttt gtgttgtctt tttgttgcgg acaaaaactg
      781 agtttatgac cattttcgca aaaaaccaaa cctgcaaaga gattttcgtg accaggcttg
      841 tttttccagt cgtatcggcg agtaactcgt ttatggttca tcatcttacg aaccgttttg
      901 aagtcttctt tcgaaatgat agcttcgtgt gtatttggaa aaatcagcca atcttctcga
      961 ggtttcatac gatgacctcg ttgtttgtag gaaatttttg cagtcttgag attgacagtc
     1021 gcccctgtat attcctcctt ttcgagcatc tggcaaatca tttgattttt ccagtgataa
     1081 gggtcacttt caagaactcg ataattcgaa atacctagct ttttcttgta attggcgggt
     1141 gttaggacct tgtcctttcg aaggtcattc gcaatagaag agattggttt tccagagaga
     1201 tactccttga aaattcgttt cacaattcga ctggcataat cgtcaatcag ccactccttg
     1261 ggattttctg gatttttgag ataaccgtac ggtgcaatcc agccaatttt ctcaccagtt
     1321 tttgccttag tgtgcttaga caacttgatt ttttcactac actgaagcga ataccagttg
     1381 ttaaacaagg aaactaaggg cgcaagataa gcatcttgac tattgcgttt attgctatcc
     1441 agattctcgt tcaaggagat gaagcggata ttttttgacg gaaatgtgat ttcggtcagt
     1501 tgcccagtca ggaggtagtc tcggctgaga cgacttaaat cttttacaac aaccgcttga
     1561 attttgccag tctccaccaa gttcatcatc ttctgaaaat ctggtcgttg ggcgttcgaa
     1621 cccgagaaac catcgtccac gaagaagaat ggatttggca agttttcacg catagccact
     1681 tgggtgagaa tctgtttctg gttggaaatt gagttactct cgccctcgtt ggcatcttca
     1741 gcggataaac ggcaatacag agcggttatc tggtctggta gattttccca attctgcgtt
     1801 ttgatgtctt caattgtcaa tgtgcgtttg ttcatagtgt gctcctttcg attcacctat
     1861 aacccactga catgatagct cgaagtgggc gtgaagtcca gtcaattaat gaattttagc
     1921 ggataaagtt tatattttat gatagaatga ggttagtaaa atctgtgagg tgatgatgtg
     1981 tttgacctta gttttttagc tcaagaacca atagtaagta ttgctggaag ctccgtaacg
     2041 accgccgcta tcaatttttt aggatattat tatggagagc gacttcagtt taataaaatg
     2101 aagcaggacc taatcgcaga aagaatcagc aattctaata gtactattcc tgccgttgat
     2161 attgctcgat gtagaaatat taaagaaatc gctcaaatag ctgatagcct agacgatttt
     2221 tctcgaacaa accctgttga attttcctct gagtggtttg ctcgtttctt tgattctgct
     2281 tcactggtct cagataggga tatgcagact atttgggcaa aaatacttaa tggtgaagct
     2341 gaagaaaaaa gtaagtattc ttttagattc attgaatcga tgagactatt gagcaaaatt
     2401 gaagcagaaa ttttcctcaa aatttccaag ctagctgttc aaacgccttt gggaggaatt
     2461 catattattt ctcccgaaaa tgaagaaatg ttggaaattt atagacaata tggtattgat
     2521 gaagatgaat tattgcttct tgaagaatgc ggtttaatta atatgggcgt agaggcaacg
     2581 catgagcttg aattaaagag agatttaagc ggatttttta atgatcaata ttttgtaaac
     2641 tttagtatca atcctgaaag caaaattaaa acatttgaat ttcatagtta ttctcttact
     2701 agatttggga gtcagttata tgaattgatt gaagagacta ctagcgctga ttttatttta
     2761 gatttagccc aaactcttaa atcacagcta gatggagaaa taattgtttc tgttcacaac
     2821 tatatattag aggaagggat tgacggcaga ataagcatgt cactagacac tgatagtgta
     2881 gatatatcta ataaaaatga gccctaaaca ggactcacaa accgttcaat tctttgattt
     2941 gacgattaat ttctcgacct gcttgatgtt tttagctttg gcgaatttca ccaaaggctc
     3001 atcaggaagt tggatttctc cattacatcc tctgttgtaa agttcaccaa attccttaat
     3061 gacctcatcc atatattttt cttgggcttc agtttttagt ttgtagtgag ttttgatagc
     3121 atccatcttt tcaataaaaa tatgggttaa ttttatcaat agttgcatcc gtttttcctc
     3181 ctaaaaataa gaaaaacgaa gcagaacagt tgtaaacagg cgttcgcaat gttctacttc
     3241 gtttaagtat atataaatta tagcacaaag cgaatgtttt gtcaattatt gctcatctct
     3301 caaaatcaag cgtctgattt tcttctcaag agattctttt cctgtaaact tcctcacaat
     3361 cacgaatgtc gctttgccaa ttttacgttt ctgttcttgc gccatctcgt cctccttgta
     3421 taaactcagg aaactcatct agtgtcacta cttcaaaaag ctcccagtaa gcatctaaat
     3481 cttccttgat tcgattcaaa atgcctaact tccgtttttc atctggcaca atccaaacta
     3541 ccaatggaaa gacctcgttc tcacgttgct cgatacccgc attgaagtag gcaatgtatt
     3601 gcttgcattt ggcaatcact ctaccaatat gttctgtggc gttgtcggct tcgaaaaaat
     3661 aattttcttc gaattcgcca atggttagtc gaacgaaagc gtcaggcttg agcgtaaaat
     3721 gtgagaacag ggtcgcaaag ctccgccaac atcttggttc gaaggaaaaa tcttccagaa
     3781 atagcgttct ttcactatga agtctatgaa gctccacaaa caattgcgtc acgaacagct
     3841 ggtgtttgag gtggttgcgt gttggctcat aacgattttt caatttgagt ttgacacttg
     3901 gctcaatctc acgcagaacc ttaatgcctt tgtgcgtgat atgccaaatg taggaaccac
     3961 tcccagctcg tacgccaccg attcggcgtt caagatgatg gataagtcca aggtttctta
     4021 atttcttggc gaggagattg gctcgccttg tggcggtttt aggtttattt tctctgaaat
     4081 aaagttccac caactgtttg gttgtggcgt agcgacaacg attaagtagg ctcagcacct
     4141 cataatctcg tttagttagt ctcatctgac acctcctttt tcttcctgcc gataccatag
     4201 attggttttg aggctggttg gcttgattgt tgttcaggaa atgctgaacc atatcgcttg
     4261 aagctctcgc cataaatctc atctttcttg cgaaaggcag gcggtgctgg cattgttttg
     4321 gcagatagcc atttgaatgt atttttcacg attggcactt tggtataaac ctgaaacaga
     4381 gggagtttgt agaaatcctc tgcggaaagt tcagggacaa gccccgccag ctccttagct
     4441 tcgttcatcg aaagcccaaa gataatctgg ttatggcagt tagcgtaaat agactctcga
     4501 agctgtttgg gtagttgctt tgaaaattga ttggctaaaa tataaccaac acctaaactt
     4561 cgagacatag agagtgcatc gtccagcgga actgggagtt tgagataatc tgcaacctca
     4621 tcaatgtaga tgaagacagg ctttcgaatg gtttccttgg ctcgaaggag tgttagctga
     4681 tataagcacc ccagcaggat tgctccgatg aatttggcat tttctgcacc gattaagcct
     4741 ttgtttagtg gaacaagcaa gagtcttggt ttatcaaaaa tgtccttcaa tgagaatttt
     4801 cctgaagttt ctcctagtgc cgctctcaag gctggacgaa gcaagacgct ccgaaatttg
     4861 ttaaggactg gagaaatcat ggtttggcgt gcggaatcgc tcaaggtgtc ataaccttgc
     4921 cagaaatcca gtaaaaatgg gtctaaaaca tttttcaaaa ggtcgtgccg aaagactttg
     4981 ttggttaaga gttttggtag gtcgataagt gttaaaccat ctatttttgc caaagtatga
     5041 aaactatgac tgagaatatc ctgtgtgtaa atcccccaag aaccttcgaa aatctcctga
     5101 aaaacaccga gaagcatatc cgcaaccaat tctgctggca cgccaaattt taccaagtca
     5161 aaaggattta tcgaaacgga ttgcccattt tgactagggt ctaaaatgac cacatcctta
     5221 tcccgttcct taggaagacg ctccagaaca tctgaagcta atgttgcctt ggggtcgatg
     5281 accacagcgg agcggttttc ccgagcatca gccaaaatca agttaagcat ggcagtggat
     5341 tttccactcc cagtgccacc caaaagccat gtatgcgata atccttctcg tgctggaata
     5401 ccgataaacc tcgggaattt ctccaaacta tatccaaaga gacgtttggt attttgtgaa
     5461 aagccgattg gtggtaaaat agttttgggc gacagtgatg atacgcctgc atattgagca
     5521 tcgccagctg gcagcaagaa gaggctggcg agctcaatgc ttgagagaat ggtctggaag
     5581 tgccacggca gatgtccgtg gtttattttt tcgcatgaag ttggcttggc agaaaactta
     5641 gccccagctc gctctaaaat ccgaagcgaa gccagaatgc tctttagaag ttgaatttct
     5701 ctagctttgg tgtctgttcg aatacctaat cgcaaactaa tttgaaattg actgtggtgg
     5761 agtttttctc gcatcagtgc cttagaatct gacgagagcg gtggaatatt acctgttagc
     5821 ttttgccaga gtgttgcgtc tggattgcca aggtctttga gaattggttt tggggaagaa
     5881 gatttaccga caactagctg gagcacgatt tcttcatttc tttttaaagt gccagcttgc
     5941 gacaggaagc tccgaacgag attgtctact tctttggttt ttaaggcgta gtgatttttt
     6001 gaaagagtaa tgctgtaggc tgaggtcact tttgcccgct tggttttctc aaaacgaaca
     6061 ggattgtgtg aggtcatcat ttctttcaaa aatcgcaagt cgattgagtc ggctccgata
     6121 agatggctgg ctttttcttg tgtcaaacga atttcccaga taaagggctg gcgacgagaa
     6181 taaccattga gttgtgttgt aaaattacag attgtttcga agtcaaaagg tctcgtccaa
     6241 tccatacttt gccacgacag atgagttggt cttttcatac tacctccaat cttgatgatg
     6301 tttgatgagt tttatggcaa cgtaaaagcc taaagatatt atagagccaa ccaccaactc
     6361 cagccaaata tcgactagaa gccgaacaga gtagttgacc agtattgcca aaagtcagaa
     6421 accgacaacg tagctcatta gctttttcat tcatcttgtc ctacctttcg aaaatctcgg
     6481 acatctttcg agtatttagg aactggatag tttggaatga tgatgtcgct cgtgatttca
     6541 ttgccccaaa cataccagtt tttgtctgaa ggcactggac ggcgagcgaa gagttccaga
     6601 taatctccat ctgaacagcg ttcgataatc gaataaactt cttcaggttt gtggctgtgg
     6661 tcttggactg gaaacattcc ccagttcatt tgtcctttga atttgatagg agttttgcct
     6721 cgggtcgcaa aaatcacttg ttcggtgcag tttcgaagat aattgccaag tccaagacgg
     6781 ggtttcaccc aagtgaagat ggattttggc tcgaagcccc aagctcgcac gacttcgaac
     6841 gattgttcga gggcggctgg atatgtccag agccagaggt gagcatcgtc ttcggcgagg
     6901 cttgcgatgg gcattttctt gatttcttca atcgtcatta agttataatg tcggattgcg
     6961 ccgagtttgc ctttttgtgc cacatcccaa ggcgggtcgg cgaggatggt cttgaacttc
     7021 ttaggcgaat gttggttaat tgtgtcttga tattttgtca ttttgaaaat cctttctgtc
     7081 tacgtcagac gctctgactt taccttaaaa tataattttt tcaaaccata agtaagataa
     7141 ggttatggag cgatgcgaaa tctaaaaaca gaggtcagac ggaacaaatc cgcccgactt
     7201 gttcgctgtt gtgagaaata caacagattg tcttaaaatt tcctcctttc gtgattgaga
     7261 gtttctaata gcttcttctg agctaccaga aagtcctcgt tgatagcttg acgagtttca
     7321 agaaattctg ctaaagcgag ttcttcttca gtggaaaaat cgaaagtttc agactcttgg
     7381 ggctcttcct cctcatccac taaggtaatg agagcaagcc ccagaataca tagagctgaa
     7441 agtaatacaa gggcaattga attccagtcc atacgagcct cctatttgaa acgacgagca
     7501 gaaacgtaag tgaatgcttt aatgacgaag tcagttcgtt gttgggcttg cggattgtga
     7561 gccagaatct gagcctcaag ttccgagagg ctggcgacct tgttcaagat gtcttgagcc
     7621 aaaagctcgt tggcttgaac aattgccata tcttgcgaca ggttgcgagc gattgccatt
     7681 ttttgtgggc taaaagcaga ggcgggcaat gcttcggatg tttggtattt ttgaggtagt
     7741 tgtggcatgc ggtgtctcct ttttgatata attaagttag ctaacttggt tacagtatat
     7801 caagcttgac agcctaaatt ttgccaaagt tttgcgattt tattgcgaaa aggagagtat
     7861 ctatgtttac acttcaaaat ttacttcact tattagaaaa agaaaaccgt ggatggaaaa
     7921 atccaaccac gatggcaaaa actatcttaa tggcactcac aaattacaac taccctagcg
     7981 atgttgcttc gaaagtcttt tcgggtgtta atcaggggag gaatatcttt tttgatatta
     8041 agcaacttat agacgatgag gattttgaaa cttatcttgc aagtactgaa tttagattgt
     8101 gtaatcaaaa cttccgtaac ggtaattttg acagcacgaa gatggtggaa gcaactcata
     8161 atctcctaaa agagtctaca aatctgaatc aggatatcta tcaaggattg cttcattcat
     8221 attgtaaaaa taaagataat cgaccgtatt tgtttctgtc ggagtgtttc tactatgctt
     8281 tagcttgttg tcacgacaag actgtgagtt ataaaatcgc aagtatttct gaagttaaaa
     8341 agccacaaac tttaccagtt tgggatggca atttagatga tatcttatct gaagaaagtc
     8401 ttccacctaa attttggaca actgtcgaac aaatgaccgc caaagaaatt gcggttttca
     8461 aaacgctggc aagtttggct attattgacg aagatgagga atattatctt tatgctccag
     8521 ttacagatga ggaaatccaa ctttacaaag actttagcat tggtgatgcg gagtttcttt
     8581 tgatggagga attcggactc atcaatattg gagcaagaat tgataattct gtttctgtcg
     8641 aagctgatcc tgctggattt caaaatgata atttggtttt gatgtttaca actcaatatg
     8701 agccttttga tattacatac aaaagctata catttacaag tgttggttcg aaattactgg
     8761 atattttagc gattgaaaca gatgataaat tcttccagcg attgtcgaaa ctgtttgtca
     8821 agcaacacaa aaatctactt atcgagtttt accttgtacc aattgaggct atggatgggg
     8881 tagaaagtat agaggagctt gaagaatttc gattacaata aaaatcccca acttgttacg
     8941 gctgaggaaa gttattattt aattattcca ttcttttaca aaataaactt ctatccgcaa
     9001 aacttcaagc aagttttgac aaaattcttt ttcggtttga ctatctataa ctgcttgaag
     9061 ttttactata aattcccaaa gtgtggcgtt aatttcgtag atttcggtat gtttggtaaa
     9121 ttgttcgaaa ctcgttacag cgtagctcat aacgccattt tttacggtta gacgatcaat
     9181 aaacgctggc aagcttatgg ctggcaaata ggctccgagc tcggtacaat cccactttgg
     9241 tatttctggt atcaagcccc aaagtgtatg ttggcggatt tcttcgccaa gtgttattaa
     9301 ttcttgtttg gctttgtagt cgttcataat ttccttatct gttatctatt attactggac
     9361 aatgataact ctctttatta aggaagtcca gtctatttcg atgtaatatt tacaatctgg
     9421 aagtgagctt cagaatcaga gtctaaagaa tatttcaacg cttaaacaga cgttatatgg
     9481 gcaggaaatg gcgatacgga gaattaatta tcaaaggtag ttattcagat attaatagac
     9541 attttttttg atacagtatg gaaatttaat attgaacttg cttgatttcg gggatggtaa
     9601 tggttagttt gccttcgtat tttagattca tctcgctcgt ccattattga agtttatagg
     9661 gaacttatat atggtagcaa agtgccttgt ccgccctaaa ataaccctga atagataata
     9721 agccgcctga cgaaacgccc ctgaaacggc gacgctccgc ctgctaaatc tcacttgaag
     9781 cgaatagcga taggaataag aaaactagaa aaatttctag gcaagtaggt atagtactag
     9841 gtttataaac ttcgtataga agttaaagca actatctcgg agaagcaaaa agtcccatat
     9901 atacgggaca ttagttattt attccttttg ttggaaaatg ctataaaaga aatagcagat
     9961 agtacaatta aaattccaac aaccactacc attccattga cagaatttga tttggtttcg
    10021 gttgactctt cgtcaatata ttgggtatct tcagattcct cagcagaagt tgactcctct
    10081 gtctcggaag caattttatc agcttctatt tcgtctaatt tttcttggac acctggaact
    10141 ttgttaaaat ctaaagcttc ccaagattgt acgttagatg ataaatcaaa gtttgataaa
    10201 ctttcagaat aaaacataaa tagtatggca tcatcatatt gattgtgaat atcgctatat
    10261 acaatgttat tttttgtata cgtccgtaac tgcatatgca tatttactac gcacaaaagc
    10321 gatacctgta agcgtttgtc catataaact ttctggtaac ggtaagacct cgtcctctag
    10381 aacatacatc ttgaatggaa cgctttgagc gccaccagca tacccccagc tgaaactgtc
    10441 aaatactctt aatgcgaaat ctgtattaaa ttttgagcca tcatagtcta atacatagta
    10501 accatctaaa tgaataaatg ggtcttcgaa acgagggtcg ttttctcctc tgagaatgta
    10561 tcggtcactg taggatacta tttgttcatc attattgaaa ggacctctct caaccagatc
    10621 atcataagag atagtaagtg ggaggggaat tttatcatct attgtgacaa actggtttcc
    10681 gcgaactgaa tcgtgcataa cggaatttat agttcttcca ggtatggtgg gagagtcgat
    10741 tgtgaaagac tccccaggtt tcagataaat tacgaggtct ttgacagtag aacccataac
    10801 ccctttaagc aagaatgcgc gaacgtcatc atcatacttg cggtctctgt ttccgattat
    10861 gccatagaga ttgtctgcat tctctgcacc tgtagctagc ggcgcaaatc gtatattatt
    10921 atcctcataa agtgatagtg gcgtaggttc tgcgaataca gtattgcaac ttagggtgag
    10981 aagtaataca tagaaagcaa tgatacttgc gagtattttt tgaatctttt tcataattac
    11041 ctttctaact ggcattgtgt tatttaaatt gaagaacttc aatatataat tttccaaaga
    11101 aattataatt tctcacgttt atcactgttc gtcgaatttt gtttagctcg gttgcgttta
    11161 tttttatatg agtcttctaa atgatatata cccttcatca aaatatgttt caaaatatag
    11221 gcaccaataa ttaatccgat aacgaggatt acataaagtg tttctgcatt cattttaatc
    11281 tcctaaataa ttttattttg ttgtatggta ttggatgacg tgacgttcaa ccgttgcatt
    11341 gctatcaagt ttttgatagc tcgctcgact tgagttaata agatattgtc aggattttct
    11401 ataacactct gatcacaatt gtatgtgttg gtgataataa gcacatatgc tttttcttca
    11461 tttctaattt cagacgccaa aagagcgaga acatagcttt ccttgacaat gatattattc
    11521 gttattttga aaacagcatc accgtcatct gttatgttta gaagttggat atggttatct
    11581 ttgaagctcc ccatatccaa tacggataat atctcttgaa cagagctaat tttgcttgaa
    11641 aagaagcaat gctcttgaga gagaaataat ttatctcgcg attcgatagc tccttgattg
    11701 agtagctcat ctcggcgtcg ccctatgaag aaattgcgga tacaatagat aaaaatacct
    11761 attatacaag caattattat cttttccata aaatccctcc attttttcat caaaatccct
    11821 gctacaatag ggtttgtgcg tgttttagtt aacggtcgtt aactaaaaca atgaaaaatc
    11881 aaaaaaatgc cgacttggta aggcttcaaa aaccccgtca aatcagcatt tctaatattt
    11941 tttattgata actttgattg ttttaacaaa cgaccgtctg ccaaaacaaa tgtattcgct
    12001 tacagtttat caatttgttt ttcctttgtc aaagaattat gtgctttttg actacgaaat
    12061 gtgatattat ttcgttttaa gacctgatag atggtggctg ttgaaatatt cagctggttg
    12121 gctattttgc gaacagttgt ttcttcttca agataactta taatgacttg cttttctttg
    12181 gattttgata tacctttatt gcccaacttg ccccctcgct ctctggcttt acgcagaccg
    12241 tctttggtgc gctctgaaat agcttgaagt tcccattccg ccacatagcc caacataagg
    12301 cagaagaact tgcctgttag cgaatccgtt tcgatttgtc catgtatgga ttgaaggcgg
    12361 atgttatagc tggttagctc cgagataata gcagacaggt ggagcatttt tctggttagg
    12421 cggtctagct tatagaccac aaagctggtt tctatgtcac tttcggcaca ttccttggca
    12481 agcttgagag ctttttgaag ttgtagtcgg tcttggttgc cgcctgtttc tttttctatg
    12541 tagagcttgt cgcaaaagtt cagggcttct ttttgaactt ccaagcccaa ctcttggcga
    12601 ttgtctgttg aactaacacg ggcatagcca atgatgacag aacctttttc ttgatattgc
    12661 ttgatgattt tcttcacatt ttcctcctta ctttactatt gtagcagggt ggttctattt
    12721 tagaagaaaa ttataattat gtaataattt ttttagattt cttgtatatt aaaaagatgt
    12781 ttttgtccct ataatattga ctttgtccca aaagattgtt attatatttt taggaggata
    12841 gacagatgaa aaaaaaacaa gtgataaacc ttattagata ttttacagag ggcaatactt
    12901 ctggatttag aactgaagct tatgagatag ctaaagcatt cgacaaaacg ggggatcacc
    12961 aattagcaga atatattata gcaatgcttt cagaaaacaa tacatttatt ccacaagtaa
    13021 gtgaagaaaa atttgaatca ctaagaaaaa ttcagttgac aaatttcaac cctttaccac
    13081 ttccagaagc tatatcttca gatgttatag gtgtggtgaa cgccgtgcga cgaaatattg
    13141 gggtagataa atttctgttt gaaggtgcac ctgggacagg gaagacagaa acagtaaagc
    13201 agattgctcg cttgctgcaa agagagctat atgttgtaga ttttgaaact attattgata
    13261 gtaaactagg tcaaactgca aaaaatatag ctaatttatt taaagaaatc aatagtttta
    13321 cacaccctga acaaacgctt atcttgttcg atgaaattga tgctattgca ttaaacagat
    13381 tagataataa tgatcttagg gagatggggc gtgcaactac agcaatatta aaagggatgg
    13441 atacgttgcg agacggaatt gttttgattg caaccactaa tttatttagc gcttttgata
    13501 aagctctaat tcgaagattt gatgcagtta ttaactttaa tcgatatagt caagaagatt
    13561 tgttggtgat tgcggaatct atgatgtcaa ctattttgaa cgattcaaag cattctggta
    13621 aaaatgtgag acttttcaaa aagatagttg cgctttgttc ccctattcca tatcctggag
    13681 agcttaagaa taccttgaaa agtgcagtcg cattcagtag tctaacagat aagttcgact
    13741 atttacgacg attattttca attttttata aaccggttga caacacaacc ttaaaagagt
    13801 tgaaagaatt aggttttaca gtaagagaga ttgaaatttt gacaggaata tctaaaagcc
    13861 aaacagctag agaattaaag gaggattgat atagatgaat gatcttttac aattgaaagg
    13921 gcgttttgag caacgatcga gcagtagtaa gccaggagca cccaaactct tatccaataa
    13981 agttgtgacg attaatgagt tagtggagtt aagaaatcag ctagagtcac taagacaata
    14041 ttgggaaact gttacctatt ttgagggagc ttttataaca attgtttata aagacatagt
    14101 agctaagagt cggcgagcaa aagagctatt aaagaagaat agtcgtactt ttccaaatga
    14161 tctaattgtt ggtgctcgtt atatagaagg tgacaagata cgacatgcca ttacttacta
    14221 tgttgataac aatactattg tcgaaacaat aaataaatta gagttagcga tagaaattct
    14281 tgatgaagaa ttttccggca agattactac agaagtagtt gatgcaataa atgctaagtt
    14341 gtatccatat ggaagctcta agttatcgaa gacaacattc ttacaagtca ttgttgatgt
    14401 tagctctatc gaagagttca ctattccaga agcaaatatt gattcaggac accggtcaat
    14461 tgttagtgtg tttaaaacgg aactacaaac gtccgaactg cttcgtagat tgggcttaga
    14521 tatttctatc ggtagagtaa tagatgattc aaccatttta ttaactccgg atgagattgc
    14581 cttaataatg gaaaaggcac cttatctcat atctatggcg acagtggatt tatctcaatt
    14641 agatattctg gattttgatg aggcaaattc gagccaaata ttgtcaattc cagatcctac
    14701 caatgagcct atcatcggtg ttattgatac tttatttgat gagagcgttt atttttcgaa
    14761 atgggtaaaa tatgaagata gagttgatag tcaaattgaa aaaatgtcaa gtgattatga
    14821 gcatggaacg ggcgtatcat caataattgt tgatggggct tcaattaatc cggatcttga
    14881 tgataattgt ggtcgtttca gagtcaaaca ttttggtgtt gctacaagca aacaatttag
    14941 ttcctttact attatgaaac acataaaaga gatagttgct gaaaatagag aaattaaagt
    15001 ttggaattta tctcttggtt ctgcgcttga aattcataaa gattttatct ctcctgaggc
    15061 ggcaatattg gataaaattc aatatgatta tgatgttata tttgttgttg ctggaacaaa
    15121 tataacatca gattcgaata gcccgatgtt aattggagca ccagcagact caataaattc
    15181 acttatcgtt aacgcagtaa ataaggaaaa tatccctgct tcatattcca gaataggtaa
    15241 agttctatct ttctttaata aaccagatgt tagttattat ggtggagatg gtagagatag
    15301 aattagggtc tgtttccctc taggagaagg ttttgttaag ggaacttcat ttgcagcgcc
    15361 ttggattacg aggaaaattg catacctcat acataaagtg ggattaagca gggaagttgc
    15421 taaagcatta gtgattgatt cagctatatc ttggagccaa aatatgacat cttcaaatgt
    15481 tataggttac ggtgttgttc ctcaagatat taatgaagta ataaatgcaa aagatgatga
    15541 gataaaattc attttgtctg gggaatctct caagtatgat acatatagcc accagttacc
    15601 agttcctatt gtaaatgggc aacatccttt tgttgctaaa gcgacactct gttatttccc
    15661 aaaatgttcc agaaatcagg gagttgatta tactaacaca gaattagata tttatttcgg
    15721 aagaatgttg cctaatggta aaggtattaa aacaataaat gagaataagc aaagtgataa
    15781 tgtagcactc cacgaagaag atgcgcgaga acaatacaga aaatgggata atgtaaaatc
    15841 aattatagaa tatgttaaac cacgcggacg tgcgaagaaa gcttatgata atggcttatg
    15901 gggattcagc cttaagacta aggagagatt aaatactgga gacggagaag ggctaaaatt
    15961 tggaattgtt gtcactctta aagaaatcaa cggtataaac aggattgacg actttataaa
    16021 ccaatgctca atgcgtggct ggttagtgca aagaatcgat gtggaagaac tgattcaagt
    16081 tcacagtatt gctgaagaag aaattagttt tgatgagtaa cggtagctaa gagtgctcat
    16141 ttatatttgg taaatgttgt atcgtctttg ttttattctg tcagaaatta aacaaggaaa
    16201 ttaaattatt aagaaagatt ggataataaa tggaaagttt tacaattgag tttgaagccg
    16261 attcggaagg ctactttact tatgagtgcc ctttttgtga agaacagttt aagctattag
    16321 cttccgaagt gcaagatgaa gattttgaac tcgaagaact attttgtccg tattgcggat
    16381 tagttgatgg tgccgataag ttctattcaa aagaagtatt agcctatatt caaaatctcg
    16441 ctgaagagtg gatgattaac actataaata agagtttggg ttcaatcaaa agttcaaaga
    16501 attttaaggt tgatttcaag aagataaaac acaacaccat tgctaagcca tctgaaatag
    16561 actccgttga agaagtattt acttgtgggg tgtgcgaaaa acatgaaaaa gttttattta
    16621 gcgcaggtgc ttcaaaagtt ttctgtgctt actgtggagg tgatttatga tggaagaatt
    16681 acaaaaatat aggaaaatca gtctagagtt tagaagaaat tcatcaaata tgttgaacac
    16741 aaagtataat gatggcttgc tatatcttgt cagatttaaa gaatttattg ataagagcga
    16801 tattatacgt caaattttag aagacttatg gattgattta ccaaaagact ttaacgagaa
    16861 gctcgtatcg gaagacagta attcaggatg gagctatttt agtattccta tagaggaatc
    16921 taaacatcta aaactctgct atgattattt gaataaaatt atagaagatg atgttgattt
    16981 agcaggatta tcttgtgcat ttcttttaac ttcctctaaa aagtttaatg atacaatacg
    17041 agagtttttg aagaaagcct tcaagccgtt agttgattat ataaatgacc aattatctca
    17101 aaaaataatg gaattaacag gagtaaatca agtcatgtct caaattacac aaaatattga
    17161 aaataattac ggaacagctt cagcagtggg aactggaact atatcatcaa taaataatgt
    17221 ctctacgacg gatattgaaa ctttaaaaaa tctctgttca aatattttga aagacttaac
    17281 tggattaaat atgttgtctg aggatgataa ggaagtgatt attgatgata ttgaaacgat
    17341 tcaatcgcaa gtcgtttccg atagacctaa gaaaataaag cttaagaaag cgtggtcttc
    17401 aattcaaagt tttctcccta aaataccagc aggaatacct gtcacattac aactaataga
    17461 actgggtgag aaattatctg cattattttt taggactaca atctcttatt ccgtgatttt
    17521 tgtggttata ggatttgctg caatttggac tgctgtctgg actgtgctat aatagagaca
    17581 tgaaaagatt atgtgatgaa ttatcggttt tgcctgggat tggtccaaaa tcggctgaaa
    17641 aattcttaaa aattaacatt caaaatatta atgatttgct gacttactat ccattcagat
    17701 atgaagattt tgagagtaag tctatttatg atttgcagga tggggagaag gcagtggtag
    17761 ttggggaggt agtatctccg gctaatgtac agtattatgg ttacaaaaga aatagactcc
    17821 gtttttcaat gaaacaggga gaggttgtct tagcagtttc gttttttaat cagccttatt
    17881 tagcagataa gattgttttg gggcaggata ttgcagtttg gggaaagtgg gataaggcta
    17941 aggcaagttt gacaggaatg aaaattttgg ctcaagtatc agatgagctc caacctgtct
    18001 atcatgtggc gcaagggatt tcgcaagtaa atttggttaa ggctattaaa acagctattg
    18061 atcagggata tttgcattta ttagaggaga acttgccatc agttttacga gagcgctatc
    18121 ggttaatgaa tcgccgagag gcggtttttg cgatgcattt tccgacaaat ttagaagagt
    18181 atagacaagc tttgcgacgt atgaagtttg aggaattatt ttattttcaa ttacagttgc
    18241 aaatgctgaa agccaacaat cgtgatattt cgaatggttt gaagattgct tatgatgctg
    18301 atagattggc tatgcaaata agacaattgc cgtttgtctt aacagatgct cagtctgggg
    18361 ctttggctga aatactatca gatatgaagt cctatgggca catgaatcgt ttgttacaag
    18421 gggatgttgg ttcagggaag acagtagttg ctggattggc tatgtttgct gctgtgactg
    18481 cggggatgca ggctgcaatt atggtgccga cagaaatttt ggctgagcaa cactttgaga
    18541 gtttgcgcca gctttttcca gaactttctg ttgctctttt gacaggtgga atgaaagctg
    18601 cggagcgtcg tactgcttta gaggcgattt ctagtggtca ggtagacatc attgtaggaa
    18661 ctcacgctct tatccaggaa agtgtgacct accataagct tggtttggtt gtgacggatg
    18721 agcaacatcg ttttggtgtt aaacagcgcc gtctgtttcg tgagaagggt gataatccgg
    18781 atgtgcttat gatgactgct acacctattc ctcggacatt agccattaca gcttttggag
    18841 atatggatgt atcgattatt aatcagttac ctgctggtcg aaagccaatt atcactcgct
    18901 gggtcaaaca tcaacagctg gccacggttt tagattggtt ggagaaggag cttaagagta
    18961 gggctcaggt ttattttatc tctccgctga ttgaagaatc tgaggctcta gatttaaaga
    19021 atgctgtaga tctgcaatct gatttacagg cgcattttgg agagcaagtt acagtggatt
    19081 tgttacacgg taagatgaag aatgacgaga aagatgccat catgcaggct tttaaggagc
    19141 gaaaaacgaa tattttggtt tctaccactg ttattgaagt cggagtcaat gtgcccaatg
    19201 caacggtgat ggttattatg gatgctgatc gttttggttt aagccaatta catcagttga
    19261 gagggcgtgt aggacgtggt cataagcagt cttatgcagt gttagttgct aatcctaaaa
    19321 cagagtctgg taaggaacgc atgaaaatta tgacagagac gatagatggt tttattttgg
    19381 ctgaagctga cttaaaaatg cgtgggtctg gagaaatatt tgggacccgt caatcaggtt
    19441 tgccagaatt tc
//
LOCUS       DASFRC010000023        19384 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.023, whole genome shotgun sequence.
ACCESSION   DASFRC010000023 DASFRC010000000
VERSION     DASFRC010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 19384)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19384)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19384
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.023"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(174..3101)
                     /locus_tag="U1087_000585"
     CDS             complement(174..3101)
                     /locus_tag="U1087_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001813616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NPCBM/NEW2 domain-containing protein"
                     /protein_id="HEM4755091.1"
                     /translation="MRLKKVQIKLFSIVALMSIGIIQSQVNADEISLTEIEWNSATHG
                     DATSSKTVQINQPFTAGNDGRDNKISLKMDDGNIREFENGIGTVAANPSTISYDISSY
                     NATSFSTYVGIDRTARPTDHRYAKVDKVEILVDNEVKFTTLTDYPDGINYDTPAIPLQ
                     VDIPAGAQRLELKSYSGQYTWGDEVVFADPKLTIPEHSVTNPSETNEDPNSLPIREGS
                     VYLSDLEWRIATHGDATSSKIVQKNKPFSLGNNGNNQKISLKMSDDSIKEFDKGLGTI
                     AGSPSTIEYNIEGAEVSHFATFVGLDRSAGHSDNRYANIEKVEIEVDGEVIYSTLDEY
                     PNGINYNTKAVKIDIEIPEDSRTFRLKSYAGAQTWGDEVVFAGAYFVAKGAFKNPNDF
                     DPAPKRREISNTRPLLMMPLYANGNEYSRGNYAFWGGDTLAGKWENIDPELKPYTVIQ
                     IHPDDLPKRAGVAQQFYEHILNEAQNYINPQTGQNEPIPVILTVYTAGNQPHYTAAHW
                     IGIDWIDRMYERYSSLQGVFSTENYWVWAGDVESKAAEYLKLSAKHGGYFIWSEQNNG
                     ASIEKAMGAHGKTAFKEAVEKYWENFIFMYKNTPAHEGNDAPTASYMTGLWLADYAYQ
                     WGGLMDTWKWYETGKWKLFEQSSIGKTQGNRQWLTQPEAMLGAEAMNIYLNGGSVYNF
                     EHPAYTYGVRNEESPLFSNVIETFFKYIIKNPAPSREEVLANTKVVLSGNYSSKRDGH
                     FFVDVNTATHQSPLYTTGRYGTLPAVPASISVDVLRSKLPETIQVLSLSSGEMSSAAN
                     RRNFLNALYPEEYTGNIFGDEIDNRVFIYNYEYNSDNDQTGSFELNGKEFDVTLKSHS
                     FTIVEETDSGLHILLNNYRINKDSLWEGATDATSARALPQLSKPDAIDWVYNNYIHNT
                     ANSEQRQTVYVMKNVKVKPTIEILKSTDSDIQTPQIEFDEVTKTARITVVNNGFAEFL
                     IRY"
     gene            complement(3224..4117)
                     /locus_tag="U1087_000586"
     CDS             complement(3224..4117)
                     /locus_tag="U1087_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEM4755092.1"
                     /translation="MKKQYAVGVDIGGTKVAVGLVDSNGTVDMSLRVPSQVDSAESLF
                     RCVCSAIDDLLSSQGLTIQKIKGIGIGLPGKVDVENGVAVFQNNIPWKNFPVVARFKE
                     VYGDLPIKIDNDVKVAAYAEYRLLDLDSSDMFGYITISTGIAATNIINNSILRGSGFA
                     GEIGFMPVQSFGRTSGLELACSGPAIELQGKQMYGVETISTKDVFENWRAGDRTAKAI
                     IENACTGIAQAIQNMVCFLDPKVIVLGGSVALHNLDFVEEFKEELKLYLHKEQEHILN
                     NILVSKIEGNNGIIGSAFLVQ"
     gene            complement(4127..5989)
                     /locus_tag="U1087_000587"
     CDS             complement(4127..5989)
                     /locus_tag="U1087_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001863627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-N-acetylgalactosaminidase"
                     /protein_id="HEM4755093.1"
                     /translation="MKIENNHLARYFKLVDGKFYTSHILNKDLEVVVPNQSTQEFRMV
                     LMNGRELTSEHFEAHVVEQTKETLLLSFNGEHIQLLLEYKSRVDVISKKMTVLNSQEA
                     INYIDVEWYEFANNEGIFYPQKQDDIKEMAGFSGYYVELGQPVYSKSLFFGMEFPMGE
                     NRVDGEVYFSRYYLGKAVSSAKEIWPVVIGAAPSTDKQGIQTAFYNYIEGIAQPSFFR
                     KQYNSWYDHMTNIDEDIIIKSFEEISHGFEDHGIQLDAYVVDDGWCDYESVWEFNHKF
                     PNGLTKVKALVNNLGASLGLWIGPRGGYNGTEVTMSDWLEAHPEFGSKNKLSNDVNIG
                     DFTYLNRMKAKMLDYQKQYDISYWKIDGWLLKPDVQDSSGDYAMHTMTPVYEFLIELL
                     KDLRAERGEQDCWLNLTSYVNPSPWFLQWVNSLWIQISQDVGFTENAGSDIQRMITYR
                     DCQYEEFLDKRDIQLPLWSLYNHEPIYASTAHTWYMDHQMYATVEEFEDYLMFIATRG
                     NAFWEFHYSYTMFDEERWKANARAVKWIEANYPTLKQSQKIGGSPSAFDIYGYHCVNG
                     DKEILSLRNPSGEAKVFTSENWNLYDYQTVKGHFEQVSETEIQLAPYEIVILSK"
     gene            complement(5992..7314)
                     /locus_tag="U1087_000588"
     CDS             complement(5992..7314)
                     /locus_tag="U1087_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003066419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-fucosidase"
                     /protein_id="HEM4755094.1"
                     /translation="MTKNSLQDIYKRTEWFRQDRFGMFIHWGLYSIPGKGEWIRSHQQ
                     LSIEDYQPYFEAFNPTKYNPREWARAAKAAGMKYMVLTAKHHDGFCLFDSAYTDYKAT
                     NTPIGKDLVAEFVQAVREEDLKVGLYFSLIDWYHKDYPKYGDMIHPMRENEAFKDEVI
                     DFDNYLTFLHNQVEEIVTKYGKLDILWFDYSYGNMFGEKWRATDLINLVRKHQPDVVV
                     DNRLETSGEGFGSIVTDDINIFSGDFVSPEQIVPHEGIRNAHGEPIPWELCLTMNNNW
                     AYNPTDHLYKSSKTLIRKLVECVSKNGNMILNVGPDALGLINLESKSILEDFGNWLGK
                     NGESIYGCGVSSLPKPEWGYYTQKGNTIYAHVFEQPIGPLALIGIDEKKVKRMSFLHD
                     GSEVKISKSWTTNAYEGICFAQYGDIPHFTYPLPDEVDSVIKIELESE"
     gene            complement(7311..8150)
                     /locus_tag="U1087_000589"
     CDS             complement(7311..8150)
                     /locus_tag="U1087_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001819555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM4755095.1"
                     /translation="MDAKLSGLSRTGKLIIYGYMAITCLISVFPILWIFLSSLKADPM
                     KNPGISLPTDLSFEGYIKVFTELHVLDYFWNSFKVVSISVLISIIMISMSSYVIARME
                     FRGKKLITAMLYSTLFIPATAMTFPVYRLVNVLGIYNTPAALIFVYSCSGIAMSFFII
                     KNYFAIIPKELEEAAEIDGATYAQTFWKVMLPIARPGILTAAILAFINNWNEYYWASM
                     LIINKDELTVPALLGQFTTSFNTNYNGLFSAIVVIILPPILLFAFASKYFIEALGGGA
                     VKG"
     gene            complement(8160..9080)
                     /locus_tag="U1087_000590"
     CDS             complement(8160..9080)
                     /locus_tag="U1087_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM4755096.1"
                     /translation="MAKKTMTLKNRKQQKQRFIFLFLLPTLICFFLFYFYSVVTIFAT
                     SFTKWDYTNLIKPEFLGFGNLFANYKYIFKEYPFFLEALKNSLTWAAIGVLVQVPLAL
                     SVAIALSKKLPGWKISRNLYIIPSIISSAAMGLIFLQIYNPNYGVVNQVIRFFNPDFT
                     GAILLTPGLNIIAMTCAYIFFAGTSTIMILGQIFAIPQEIHEAAILDNITGWRREWYI
                     TIPMIKETLKTVSIMAATSGFLLYNEVFFLTNGAAGTKSISFIIRELAVSSSRTQYAR
                     ANTIGVIQILGGMLIILCINLIFREGKARK"
     gene            complement(9139..10446)
                     /locus_tag="U1087_000591"
     CDS             complement(9139..10446)
                     /locus_tag="U1087_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001036440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEM4755097.1"
                     /translation="MTKKLLKCGSLCLLASVFLAACSASGSNSGSSEEKAASGGDEAV
                     LEFYHGYYHSEDEWPAAKVMRDLYDEFAKQHADGDVEFKATPVNGSLTDIMNNKVASG
                     EFPDMIDLAGNDVSLAAIEQSLVLDLKPYIDENGLEKNVGLNYTQNDVDGKIFTVHDQ
                     LLTLGLWYNADIFEKAGAKTPDQWAKWSDFTEAMAKVRSQEGIYAFGAGEPAIRLFNT
                     VLGSSEAGRKLLEGSLTSEGIDSKEFAEALKLVMTEVQANGSANAGGDANVYSTDFTD
                     GKSGVFFNGVWAAGGLSENPAYRPGLYAGNIAISSAGGGLTISSGLSEPEEKLALEFV
                     KYMTSDDVQKTIFEKVGANPTSQAIDTAEIAKGSDDATVKLLGEATSMANNADVIVPT
                     VVSAWGGDVRTAIINALTESAADGVDIDQKVKETQDILKALIG"
     gene            complement(10466..11113)
                     /locus_tag="U1087_000592"
     CDS             complement(10466..11113)
                     /locus_tag="U1087_000592"
                     /EC_number="4.1.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001286141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculose-phosphate aldolase"
                     /protein_id="HEM4755098.1"
                     /translation="MEKERKELIAYGKKLVTEGFTKGTGGNLSVFDRKQGLMAITPSG
                     IDFFEIQEEDIVIMDLEGNVVEGHRLPSSEWYMHLIQYQERDDIDAVIHAHTTYGTVL
                     AVLREPLPASHYMIAVAGKDVQVADYATYGTKELAENAAKAMKDRRAVFLANHGILAG
                     AQDLLNAYNIIEEVEYCAKIYCVAKSMGEPVILPDEEMELMAEKFKTYGQRQTSK"
     gene            complement(11133..12920)
                     /locus_tag="U1087_000593"
     CDS             complement(11133..12920)
                     /locus_tag="U1087_000593"
                     /EC_number="5.3.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose isomerase"
                     /protein_id="HEM4755099.1"
                     /translation="MTNYPKIGIRPTIDGRQGGVRESLEEKTMAMAVTAKELIESNLR
                     YADGTPVQCVVASRTIGGQGDAGIVYDEFSSQNIVATLSVTPSWCYGTETMDMDPHTI
                     KAIWGFNGTERPGAVYLAAAMSGYAQKGYPAFKIYGHDVQDLNDNSIPDDVAEKILLF
                     ARGAIAAGQMKGKSYVNIGASSMGIAGSQVTSSFFEDYLGMLVEFVDMTEILRRIQLE
                     IYDKDEYEKALAWIKENCKEGIDINAGKDFPEVITKSKVIPADKDWEFIAKQTLIIRD
                     ILFGNPKLAEIGWEEESRGRNAISGGFQGQRQWTDWLPNGDFAEAILASTFDWNGPRP
                     VTAFATENDTLNATAMLFGTLLTNKAPIFSDVRTYWSPEAVQRVTGKELTGRAKDGIL
                     HLINSGASALDGSAAARDENGQPTMKEFWNMTEEDVKACLEATDWCRANYEYFRGGGF
                     SSHFKTEGELPVTLIRVNLVKDVGPSLQIAEGYTCPLDDEVHRILDERTDRTWPTTWF
                     APNLGQPGFETVYDVMNHWGSNHGAFVHGHIGAEVITLASMLRIPVALHNVPRERIFR
                     PAIFDGVGTKDLEAADFKMCEVLGPLYSK"
     gene            complement(12922..14319)
                     /locus_tag="U1087_000594"
     CDS             complement(12922..14319)
                     /locus_tag="U1087_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnulokinase"
                     /protein_id="HEM4755100.1"
                     /translation="MQSVLAIDLGATSGRAVAYSLVEEKIIANELVRFTNSPIKHRGE
                     LCWNVEHIFQNIELAIQTAKKSYEMQAVGIDTWGVDFAQVDSQGKLVTPPVCYRDSRT
                     KGILNKIAKYSSLDDLYYKTGNQLMEINTLFQLIAAKEKSPESYFRTHKILMVSDYLN
                     YRLSGELAIERTIASTTQMLNPLTKDWNHEVLAMFEVSDLLLPDLVDEGNVLGKTPDG
                     IKVINVCQHDTASAVAAIPNLEEKTLYISCGTWSLIGTELENPILTEKALTYNFTNEL
                     GHSRSTRFLKNCTGLWIVEELRRDYKEQGQEFGFDTIRQLVEAVDEDVPIIDTDDSRF
                     AEPGHMIEKIQTYLVEKGHSKPEEAGQLFKIVYHSLAHKYREVIGQLEEVVDYNFSYL
                     HLIGGGSKSTYFSQLVADVTGKTVVTGLYEATSLGNALIQFKALGYIKGIAEAKEIVT
                     NSVNFHYFYPEKEEV"
     gene            14482..15251
                     /locus_tag="U1087_000595"
                     /pseudo
     CDS             14482..15251
                     /locus_tag="U1087_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018167210.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
     gene            15434..15787
                     /gene="mobC"
                     /locus_tag="U1087_000596"
     CDS             15434..15787
                     /gene="mobC"
                     /locus_tag="U1087_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /protein_id="HEM4755101.1"
                     /translation="MEKRTRPNQLKIRLSDKELAQVREKFGQSRSKSMRHFVLKCIME
                     TSIYEVDMQPFRELQHLLSKTSTNVNQIAKKVNNYSLVYKEDLKTIQNEIHHLSKELN
                     KLQNILYNRTNQGDI"
     gene            15789..17084
                     /locus_tag="U1087_000597"
     CDS             15789..17084
                     /locus_tag="U1087_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="HEM4755102.1"
                     /translation="MAVTKIHPIKSTLHFAIDYILEKKKTDGQTLISTHMCFPTTAHL
                     QFLQTRKENKVNGTVLARHLIQSFLPGEVDQETAHKIGIELCQNILKDEYEFVLTTHV
                     DKGHIHNHIIFNNVNFETGKCYQSNKRTYHQIRSTSDRLCKKYKLSIIDEHYQTYRTK
                     YKTKGKSHYEWEQNQNGKGWKSYLQFLIDLNISRSNSWDDFLDRMKNSKCEIKFGKHI
                     AFKCKYASRFTRSKTIGSDYTEERLKERIEKNPPHQLIDTTKITDKKGLEFWARKHNL
                     KSMAKGLVELRNLGIQTKNDLELAIESIADKQILIQDEVKQIDKEMTELGKIMENLHV
                     IQKNKLIYHHYQKQPNNRQFLKEYQKEITAYKMAKQDLSHNYKSATPKDILSQLEQLQ
                     EKKNTLMTEYSQIKFQFNKLYQHKKNIDYYFETEQNRNI"
     gene            complement(17087..17584)
                     /locus_tag="U1087_000598"
     CDS             complement(17087..17584)
                     /locus_tag="U1087_000598"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755103.1"
                     /translation="MILLSLYGVIIVATICLFFFIAKTSVKLTCFAIDFVAVFIYTIY
                     LLHGPVSSKISSGNMTYFWDVLFGLASVVVYGFLMLLLTIYLPKVSKIINFVIVYFGV
                     GIGICLTTDFITSLLSIFNSNIEATYRLQFLNNDLANDVFYYILFYFVSIPVWKKRMD
                     YLAGE"
     gene            17748..18440
                     /locus_tag="U1087_000599"
     CDS             17748..18440
                     /locus_tag="U1087_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000490977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM4755104.1"
                     /translation="MFSPKKLKEKRTELGFSQAEIARKLNISRMSFSAWESGKTKPNQ
                     KNLSILADIFDVEESFFESEYTIVQNYLLLTDENKLAAEDYVEQLLASQSIAENVVSL
                     FSYQVLSEVQLSAGPGESLFDEYETETVYSEDEYSGFDIATWISGNSMEPVYKDGEVA
                     LIRATGFDYDGAVYALQWNGSLYIKKLYREEDGFRMVSINPDVAVKFISFEDEIRIVG
                     KVVGHFMPVIGG"
     gene            18583..19384
                     /locus_tag="U1087_000600"
                     /pseudo
     CDS             18583..19384
                     /locus_tag="U1087_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006149971.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase"
BASE COUNT         5890 a         4157 c         3453 g         5884 t
ORIGIN      
        1 acatctacgt gactacttgg aattaaaaat taatttctac tccatttcac atacggaaat
       61 tgtgtaccta taaatttttt cgataacgag taaaggcggt agttaaatac cgcctccaca
      121 tactttacct atgaattttc aaaattatcg aactattact caatatgaat cgtttaatat
      181 cgtattaaga attcagcaaa accattattt acaactgtga ttcttgctgt cttagtcact
      241 tcatcaaatt ctatttgtgg tgtttgaata tctgaatccg ttgactttag aatctcaatt
      301 gtgggtttta ctttaacatt tttcatcaca taaactgttt ggcgttgttc agagttagca
      361 gtgttgtgaa tataattgtt gtagacccaa tcaattgcat ctggttttga caactgtggt
      421 aacgccctag cagaagttgc atctgttgca ccttcccata gactatcttt gtttatccga
      481 tagttattga ggagaatatg caaaccagaa tctgtttctt cgacaatagt gaatgagtgc
      541 gacttcaatg tgacatcaaa ctctttccca tttagttcga atgaacctgt ttgatcgttg
      601 tcactattat attcatagtt atagataaaa actctgttat caatttcatc tccaaaaata
      661 tttccagtat attcttctgg gtaaagtgca ttcaaaaagt ttcttctatt ggcagctgaa
      721 ctcatctcac ctgatgaaag gcttaatact tggattgttt caggtaattt tgatcgcaat
      781 acatcaactg aaatactagc aggaaccgct ggcaacgtac cgtatcgacc agtagtatat
      841 aaaggacttt ggtgcgttgc agtattcaca tcaacaaaga agtgtccgtc acgttttgat
      901 gaataattgc cactcaagac tacttttgta ttagctaata cttcctctct tgatggtgct
      961 ggatttttga tgatgtactt aaagaatgtt tctataacat ttgagaatag aggagattct
     1021 tcatttctaa caccataggt atacgcaggg tgttcaaaat tgtaaactga tccaccattt
     1081 aaataaatgt tcatagcttc agcaccgagc atagcctcag gttgagttaa ccactgccta
     1141 ttcccttgag tcttaccaat actgctctgt tcaaataact tccattttcc agtttcgtac
     1201 catttccagg tatccatcag accaccccat tgataagcat aatccgccaa ccacaatcct
     1261 gtcatataac ttgcagttgg tgcatcattt ccttcatggg ctggtgtatt tttgtacatg
     1321 aaaataaagt tttcccaata cttctctacc gcttctttaa aggctgtttt tccatgtgct
     1381 cccatagctt tttcgattga agcaccgtta ttttgttcag accagataaa gtaaccacca
     1441 tgttttgcag ataattttaa atactcagct gctttgcttt ctacatctcc tgcccacacc
     1501 caatagtttt cagttgagaa tactccttgt aaactagagt atcgttcata cattctatca
     1561 atccagtcaa taccgatcca atgagctgca gtatagtgag gttgattacc tgctgtataa
     1621 accgttagta ttactggaat tggctcattt tgacccgttt gtggattgat gtaattttgt
     1681 gcttcattaa gtatatgctc ataaaattgt tgagcaactc ctgctctctt tggtaagtcg
     1741 tcaggatgga tttgaataac tgtatatggt tttaattcgg gatcgatatt ttcccactta
     1801 ccggctaaag tatctccacc ccagaaagca taatttccac ggctgtattc atttccatta
     1861 gcgtaaagtg gcatcattag aaggggacgt gtatttgaaa tttcacgacg tttaggagct
     1921 gggtcaaagt catttggatt tttgaatgct ccttttgcaa caaaatacgc acctgcaaat
     1981 acaacttcat ctccccaagt ttgagcccca gcataacttt tcaatctaaa agtacgagaa
     2041 tcttctggga tttcaatatc gattttgact gcctttgtat tatagtttat accatttgga
     2101 tattcatcta aagtggaata gattacctct ccgtcaacct caatctcaac tttctcaata
     2161 ttggcatatc tattatcaga gtgaccagca cttctatcaa gtccaacaaa agttgcaaaa
     2221 tgactgactt ctgctccttc aatgttatac tcaattgttg aaggcgaacc agcaatcgtt
     2281 cctaaacctt tatcaaattc ttttatagaa tcatctgaca tttttaggga tattttttga
     2341 ttattaccgt tatttccaag tgagaatggc ttgttttttt gaacaatttt agaagatgtt
     2401 gcatctccat gtgttgcaat tctccattct aaatcagaca agtataccga accttctcga
     2461 ataggtaatg aatttggatc ttcattagtt tctgaagggt tagtaaccga atgctctggt
     2521 atggttagtt tgggatccgc aaatacaact tcatcacccc aagtatattg gcctgaataa
     2581 ctttttaact ctaatctttg tgctcctgcg ggaatatcaa cctgtaaagg tatggctgga
     2641 gtatcataat ttatcccatc tggataatca gttagagttg taaacttaac ttcattgtca
     2701 actaaaattt cgactttatc tactttggca tacctatgat cggttggtct tgcagtccga
     2761 tcaatcccta cgtaggtgct gaaagatgta gcattgtagc tagaaatatc atagctgatt
     2821 gtcgatggat tggctgctac tgtacctatc ccattttcaa attctctgat attcccgtca
     2881 tccattttta aagatatttt attatctctt ccatcatttc cagccgtaaa gggttggttt
     2941 atctgaacag ttttagatga tgttgcatcg ccatgagttg cagagttcca ttcaatctca
     3001 gtgagtgaaa tttcatccgc attcacttga gactgaataa ttccaataga catcaatgca
     3061 actattgaaa acaatttaat ttgcactttt tttaatctca tttgtaaacc tcaattgaaa
     3121 aataattctt gctcattttc ctagtcaatc aataatacgg cctacgtata ctgcttaatt
     3181 ctactttagg aactatctat cttcatatcc ttctccttca atgttattgg actaggaagg
     3241 ctgaaccaat gattccgtta ttaccttcaa tttttgaaac aagtatatta ttcagaatat
     3301 gttcctgttc tttatgcaaa tatagtttca gttcctcttt aaattcttca acaaaatcaa
     3361 gattatgtaa ggcaacacta cctccaagaa caatcacttt gggatctagg aaacaaacca
     3421 tattctgaat ggcctgtgca atacccgtgc atgcattctc aatgatagcc ttggctgtcc
     3481 tgtcccctgc tctccaattt tcaaatacat ctttggtaga tatggtttca acgccataca
     3541 tctgtttacc ttgaagctca atcgctggtc ctgaacaagc taactcaagc ccactggttc
     3601 gcccaaaact ttgaacaggc ataaaaccaa tttctcctgc aaatccagaa ccacgaagga
     3661 ttgaattatt aataatattg gtcgctgcta taccagttga aatggtgatg tagccaaaca
     3721 tatcacttga atctaagtct agcaatcgat attctgcata ggctgctacc ttaacatcat
     3781 tgtcgatttt aattggaagg tcgccataga cttccttaaa tctggcgacg actgggaagt
     3841 ttttccaagg aatgttattc tgaaaaacag caactccatt ttctacatca accttacccg
     3901 gtaagccaat acctatacct ttgattttct gaattgttaa cccttggctt gaaagcaagt
     3961 catcaattgc cgaacaaaca catcggaata ggctttctgc actatctacc tgactaggta
     4021 cacgtaaact catgtctaca gttccattgc tatcaaccag cccaacggca acctttgttc
     4081 ccccaatatc tacacctact gcgtattgtt ttttcatggt tgtctcctat tttgataaaa
     4141 ttacaatctc atacggtgct aattggatct cagtctcaga aacttgttca aaatgacctt
     4201 ttactgtctg gtaatcatat aggttccaat tctcacttgt gaagactttt gcttcaccag
     4261 atgggttacg gagtgaaagg atttctttat ctccattaac acagtggtag ccataaatgt
     4321 caaaggctga tggactgccc ccaattttct gactttgttt caatgtcgga tagttagcct
     4381 caatccattt gacagcacgc gcattggctt tccaacgctc ttcatcaaac atggtgtaag
     4441 aataatggaa ctcccagaag gcattccccc gtgtcgcaat gaacataaga taatcttcaa
     4501 attcctctac tgtcgcatac atctgatggt ccatatacca tgtatgagct gtgctggcat
     4561 agattggttc atgattataa aggctccaaa gaggcagttg aatatccctt ttatctaaaa
     4621 attcctcata ttgacaatca cgatacgtta tcatccgctg aatatcacta cctgcattct
     4681 ccgtaaaacc aacatcttga gaaatctgga tccacaaact attgacccat tggaggaacc
     4741 aaggacttgg attgacgtag gaggtcaggt tgagccagca atcttgctcc cctcgttcag
     4801 ctctcagatc tttcaaaagt tcaatcaaaa attcataaac aggggtcatg gtgtgcatag
     4861 cataatcccc agatgaatcc tgtacatcag gtttcaacaa ccaaccatca attttccaat
     4921 aactaatgtc gtactgcttt tggtaatcca acatcttggc tttcatccga ttgaggtagg
     4981 taaaatcacc gatattgaca tcgtttgata gtttgttctt actaccgaac tcgggatgcg
     5041 cttctagcca atcactcatg gttacttctg tcccgttata gccacctcgg gggcctatcc
     5101 aaagaccgag actagccccc agattattga ccaaagcctt gaccttagtc aagccattcg
     5161 ggaacttatg attaaactcc caaacacttt catagtcgca ccagccatca tcgacaacat
     5221 aggcatccag ctggatacca tggtcctcaa agccatgaga aatttcctca aaactcttga
     5281 taataatgtc ctcgtcaata ttggtcatgt ggtcatacca agaattgtac tgctttctga
     5341 aaaaacttgg ctgggcaatg ccttcaatat aattataaaa ggctgtctgg attccttgtt
     5401 tatctgtcga aggtgccgca cctatgacaa ctggccagat ttccttagca gacgaaactg
     5461 ctttccctag gtaatagcgt gaaaaataaa cttcgccatc taccctattt tctcccatcg
     5521 gaaattccat gccaaagaat agtgacttgg aatagactgg ctgccccagt tccacataat
     5581 aacctgaaaa accagccatc tccttgatgt catcctgctt ctgaggataa aaaataccct
     5641 cgttattagc aaattcatac cattccacat cgatataatt gatggcctct tgagagttca
     5701 ggacggtcat ttttttactg atgacatcca ccctagattt atactctaac aggagctgga
     5761 tatgctctcc gttaaaactt agaagaagag tttccttggt ttgctccaca acatgggctt
     5821 caaaatgctc tgatgtcaat tctctgccat tcatgagaac catacgaaat tcttgcgttg
     5881 actggttcgg cacgaccact tctaagtcct tattcagaat atgggaagta taaaacttcc
     5941 catccactaa cttgaagtat cgagccagat gattgttttc aatcttcata ctcattcact
     6001 ttctaattca atttttatca cactatctac ctcatctggt aggggatagg taaaatgggg
     6061 aatgtcccca tactgggcaa aacaaatacc ttcataagca ttggtcgtcc agctcttaga
     6121 aatcttgact tcgctaccat cgtgcaagaa gctcattcgc ttcactttct tctcatcaat
     6181 accaatcagt gcaagaggtc cgattggttg ttcaaagaca tgggcataga tagtattgcc
     6241 tttttgcgta tagtagcccc attcaggctt aggcagtgag ctgacaccac agccataaat
     6301 agattctccg ttcttaccca accagttgcc aaaatcttct aaaatagatt tgctttctag
     6361 gttaattaaa cccagagcat ctggtccgac attcaaaatc atattcccat ttttgctgac
     6421 acattcaact aacttgcgaa tcaacgtttt ggatgatttg tagagatgat ccgttggatt
     6481 ataagcccag ttgttattca tggttaagca cagttcccaa ggaatcggtt ctccatgtgc
     6541 attgcgaatg ccttcgtgcg gaacaatttg ctcagggcta acaaaatcac cagagaaaat
     6601 gttgatgtca tccgtcacaa tagagccgaa tccctctcca gacgtttcca gacgattgtc
     6661 gacaaccaca tctggttggt gctttcgaac caagtttatc aaatcagttg cccgccattt
     6721 ttctccgaac atattgccat aagaatagtc aaaccataga atgtccaatt tgccatactt
     6781 ggtcacaatt tcttcgactt ggttgtgtag gaaggtcaag taattatcaa aatcaatcac
     6841 ttcatccttg aaggcttcat tttcccgcat gggatgaatc atgtctccat actttggata
     6901 atccttgtga taccagtcaa tcaggctaaa gtaaagaccg actttcaagt cctcttctcg
     6961 gacagcttgg acaaactccg ccaccaaatc cttgccaatc ggtgtgttgg tagccttgta
     7021 gtcggtgtag gctgaatcaa acaagcaaaa accatcatgg tgcttggctg tcaagaccat
     7081 atacttcatg cctgctgctt tggctgccct agcccattcc ctcggattat acttagttgg
     7141 attaaaggct tcaaagtatg gttggtagtc ctctatagat aattgctggt ggctacgaat
     7201 ccactctccc ttgccaggaa tggaataaag cccccagtgg ataaacatac caaagcggtc
     7261 ctgtctaaac cattccgtac gtttatagat gtcttgtaaa ctgttttttg tcatcctttt
     7321 actgctcctc ctcccagtgc ttcgatgaag tatttacttg caaaagcaaa tagtaaaatc
     7381 ggtggtaaga taatcacgac aatggctgaa aagagaccat tatagttggt attaaagctg
     7441 gttgtaaatt gacccagcaa ggctggaact gtcaattcat ccttgttgat aatcaacata
     7501 gaagcccaat agtattcgtt ccaattattg ataaaggcta agatagctgc tgtcaaaata
     7561 cccggtctag caataggcaa catgaccttc cagaaggtct gagcgtaggt agccccatca
     7621 atttctgctg cctcttctag ctcttttgga ataatggcaa agtagttctt gatgataaag
     7681 aaactcatgg caataccact acaagagtag acaaaaatca aggctgccgg tgtattataa
     7741 atgcccagaa catttaccaa acgataaaca gggaaagtca tggccgttgc aggaatgaat
     7801 agggttgaat aaagcattgc tgtaattaat ttcttgcccc taaattccat acgtgcaata
     7861 acgtaggaag acatagaaat cataattata ctaatcaata cagatattga aaccacctta
     7921 aagctgttcc aaaaataatc caagacatgg agttctgtaa ataccttgat atagccttca
     7981 aaactcaagt cagtcggtaa gctgatacca ggatttttca ttggatcagc cttaagggaa
     8041 gaaaggaaaa tccataatat tggaaacact gaaatcaaac aggtaatggc catgtagccg
     8101 taaataatga gcttgcctgt tcttgatagt ccacttaatt tagcatccat actcatttct
     8161 cactttctag ctttgccttc tctgaaaatc aagttaatgc agagaataat caacatacca
     8221 cccaatattt gaatcacacc aatggtattt gccctagcat actgggtccg agaacttgat
     8281 actgctaact cccgaatgat gaaactgata ctcttggttc ctgcagcacc attggtcaag
     8341 aagaacacct cgttatacaa tagaaaacca gaagtagctg ccataatgga gactgttttc
     8401 aaggtttctt tgatcatggg aatagtgatg taccactctc gtctccaacc cgtaatatta
     8461 tccaaaatcg ctgcttcatg aatctcttgt ggaatggcga agatttgtcc tagaatcatg
     8521 atggtggatg ttccagcaaa gaagatataa gcacaggtca tagcgataat attcagacca
     8581 ggcgtcaaga ggatggctcc tgtgaaatct ggattgaaga aacggatgac ctggttgacc
     8641 acaccgtagt tagggttgta gatttgtaag aaaatcaagc ccatagccgc acttgagatg
     8701 atacttggaa tgatatagag gttccgtgaa atcttccagc ctggcaattt ttttgacaga
     8761 gctattgcca ctgataatgc tagaggaact tgaaccaaga caccgatcgc tgcccaggtc
     8821 agggagtttt tcagtgcttc caagaagaaa ggatattcct taaaaatata cttgtagttg
     8881 gcaaatagat tgccgaaacc taaaaattct ggtttaatca ggttagtata atcccacttg
     8941 gtaaaggaag tagcgaaaat cgtcaccaca gaatagaaat aaaacaagaa gaaacaaatc
     9001 aaggtcggca aaaggaatag gaaaatgaac ctctgtttct gctgtttcct gtttttcaag
     9061 gtcatggttt tctttgccat actattactc actttctaaa caaaagggct aaggatacac
     9121 ttccctagcc ctgtaatttt agccgataag ggctttcaaa atatcttgag tttcttttac
     9181 tttttggtca atgtccacac cgtcagcagc actttctgtc aatgcgttaa tgatagctgt
     9241 acgaacatca ccaccccaag ctgaaacaac ggttggcaca atgacgtctg cattgtttgc
     9301 cattgaagtt gcttcaccga gcaatttaac agttgcgtcg tctgatcctt tagcaatttc
     9361 tgctgtatca attgcttggc tggttgggtt ggcacctact ttttcaaaga tagttttttg
     9421 aacatcgtcg ctagtcatgt atttaacaaa ctctaatgcc aatttttctt caggctcaga
     9481 caagccactt gagatagtca aaccaccacc tgctgaggaa attgcgatat taccagcgta
     9541 gagaccagga cgatacgctg gattttcaga caagccacct gctgcccaaa caccgttgaa
     9601 gaacacgcct gacttaccat ctgtgaaatc agttgagtaa acgttggcat cgccgccagc
     9661 attggcagaa ccgtttgcct gtacttctgt cataaccagt ttcagtgctt ctgcaaattc
     9721 ttttgagtca atgccttcag aagtaagtga accttccaac aatttacgac cggcttcaga
     9781 agaacctaaa acagtgttga agagacgaat tgcaggttcc ccagcaccaa aggcatagat
     9841 accttcttgg ctacgaactt ttgccattgc ttctgtaaag tcgctccatt tagcccactg
     9901 atctggggtt ttagcaccag ctttttcaaa aatatctgca ttgtaccaca aaccaagtgt
     9961 caataattgg tcatgaacag taaagatttt tccatcaaca tcgttttggg tatagttcag
    10021 accaacattc ttctcaagac cattttcgtc aatgtatggt ttcaagtcca ataccaaact
    10081 ttgttcgata gctgcaagtg atacatcatt accagccagg tcaatcatat ctgggaactc
    10141 accactggca accttgttgt tcataatatc tgtcaagcta ccattgactg gtgttgcctt
    10201 aaattcaacg tccccatcag catgttgttt ggcaaattcg tcatacaagt cacgcataac
    10261 ttttgcagct ggccactcat cttcactgtg gtagtagcca tgatagaatt ccagaacagc
    10321 ttcgtcacca cctgaagctg ctttctcttc agacgaacca ctgttgctac ctgacgcact
    10381 acatgctgct aagaatacag atgccaaaag gcaaagtgaa ccacatttca ataatttttt
    10441 agtcatgaca aattcctcct attgtctatt ttgatgtttg tctttgtccg tatgttttaa
    10501 atttttcagc catcaattcc atttcttcgt ctgggaggat gactggttct cccatgcttt
    10561 tggcaacaca gtaaattttt gcacagtatt caacttcttc aataatgtta taggcattta
    10621 gcaggtcttg ggctccagct aggataccgt ggttggcaag aaagactgca cgtctgtctt
    10681 tcatagcctt ggctgcattt tcagccaatt ccttggttcc ataggtggca taatccgcaa
    10741 cctggacatc cttaccagct accgcaatca tatagtgact ggctggaaga ggttctctta
    10801 ggaccgctaa gaccgttcca taggtcgtat gggcatggat aacagcgtca atatcatctc
    10861 gttcttggta ctgaatcagg tgcatatacc attcgcttga ggggaggcga tgcccttcta
    10921 caacatttcc ctccaggtcc ataatgacaa tgtcttcttc ctggatttca aagaaatcga
    10981 ttcctgaagg tgtgatggcc atcaacccct gctttctatc aaagacacta agattgccac
    11041 ctgttccctt tgtaaatcct tctgtgacta actttttacc gtatgcgatg agttcctttc
    11101 tttctttttc catgaacata ggctgttctc ctttatttgc tatatagcgg acctagaacc
    11161 tcacacatct tgaagtcagc cgcttctaaa tcttttgttc ccacaccatc aaagattgct
    11221 ggtcggaaaa tccgttccct tggaacatta tgtaatgcca caggaatacg gagcatactt
    11281 gctagtgtaa ttacttctgc accgatatgt ccatgaacga aggcaccgtg gttggagccc
    11341 cagtgattca tgacatcata caccgtttca aatcctggct gaccaagatt tggagcaaac
    11401 caggtagttg gccaagtgcg gtccgtccgc tcatccagga tacgatgcac ctcatcatct
    11461 agcgggcagg tatagccttc tgcaatctgc aggcttggac ccacatcctt aacgagattg
    11521 acacgaatca aggttactgg caattcaccc tctgtcttaa agtgtgaaga gaaaccacct
    11581 ccgcggaagt attcgtagtt ggcacggcac cagtctgtgg cttcgaggca ggctttgaca
    11641 tcctcctcgg tcatattcca aaattctttc atggtcggtt gtccattttc atctcgcgca
    11701 gctgcactgc cgtcaagagc tgaagctcca gaattgatga gatggagaat tccatccttg
    11761 gcacgaccgg tcaattcctt acctgttaca cgttgcaccg cctctgggct ccaataggtt
    11821 ctgacatcag agaatattgg agccttattg gttaggaggg ttccaaataa catggcggtt
    11881 gcattcaatg tatcgttttc agtcgcaaaa gcggtcacgg gtctcggacc attccagtcg
    11941 aaggttgagg ccaaaatcgc ttcagcgaaa tctccatttg gtagccagtc agtccattgt
    12001 cgctgaccct ggaaaccacc tgagatagca tttctaccac gagactcttc ttcccagccg
    12061 atttctgcga gttttgggtt tccaaagaga atatctcgaa taatcaaggt ttgcttggca
    12121 ataaattccc aatccttatc tgcagggatt acttttgact tcgtaataac ttctgggaaa
    12181 tcttttccag cattaatgtc aatgccttct ttacaatttt cctttatcca agccagggcc
    12241 ttttcatact cgtctttgtc atagatttcc agctggatac ggcgaaggat ttcggtcatg
    12301 tcgacaaact ctaccaacat tcccagatag tcttcaaaga aggagcttgt aacttgtgag
    12361 ccggcaattc ccattgaaga tgctccgatg ttgacatagg attttccctt catctgacca
    12421 gctgcgattg ctcctctcgc aaagagaagg attttttcag ccacatcatc tgggattgaa
    12481 ttatcattca aatcctgaac atcatgcccg taaatcttaa aggctggata ccctttttga
    12541 gcatagccac tcatagccgc cgcaagataa actgcaccag gccgctctgt gccattaaag
    12601 ccccagatag ccttgatggt atggggatcc atgtccatgg tttcagtacc gtagcaccaa
    12661 cttggtgtaa ctgagagagt cgctacaata ttttgacttg aaaactcatc atagacaata
    12721 ccagcatcac cctgaccacc gatggtacga ctagcgacca cacactggac aggcgttcca
    12781 tcagcatagc gaagattgct ttcaattaat tccttggcag tcactgccat ggccattgtc
    12841 ttttcttcca gggattcacg aaccccacct tgtcgtccat cgatagtcgg acgaatgcca
    12901 attttaggat agtttgtcat cctagacctc ctccttttcg ggataaaagt agtgaaagtt
    12961 tactgaattt gtcacaattt ccttggcttc agctataccc tttatataac caagtgcttt
    13021 gaattggata agagcattgc ctagagatgt tgcctcatac aagcctgtca cgactgtctt
    13081 tcctgtcaca tcggcaacta actgagaaaa gtaagttgac ttcgacccgc cgccaatcag
    13141 atgaaggtag ctaaaattgt aatcaacaac ttcttccaac tgaccaataa cttctctata
    13201 cttatgagcc aaactatgat agacaatctt gaaaagttga ccggcttcct ctggtttaga
    13261 atggcctttt tctactaagt aggtctgaat tttttctatc atgtgacctg gctcagcaaa
    13321 gcgactgtca tctgtatcaa taatcggaac gtcttcatct actgcttcta ccagctgacg
    13381 aatagtatca aaaccaaatt cctgtccctg ttccttgtag tctcgtctca gctcctcgac
    13441 aatccaaagt ccggtgcaat tttttaaaaa tcgtgtacta cgactgtgcc caagctcatt
    13501 ggtaaaattg taggtcaagg ctttttctgt caggattgga ttctccaatt ctgttccaat
    13561 caaggaccaa gtcccacaag aaatatagag tgttttctcc tccaggttcg gtatggccgc
    13621 tactgcactt gccgtatcgt gctggcagac attgatgacc ttaataccgt ctggtgtttt
    13681 cccaaggaca ttaccttcgt ccaccaagtc aggtaagagc aagtctgaca cttcaaacat
    13741 ggcaagcact tcgtggttcc aatcctttgt caaaggattg agcatctgtg tcgtcgaagc
    13801 gatggttcgc tcaatagcaa gttctcctga caatcgatag ttgagataat cagaaaccat
    13861 aagtatcttg tgtgttctaa aataagattc tggtgatttc tctttagccg caatcagttg
    13921 gaacaatgtg tttatttcca ttaactgatt tcctgtctta taatataggt catcaagcga
    13981 tgaatacttg gcaattttgt ttagtattcc ttttgttcga ctatctctat aacaaaccgg
    14041 tggagttact aacttccctt gactatcaac ctgagcaaaa tcaactcccc aagtatcaat
    14101 cccaacggct tgcatctcat atgatttttt agctgtctga atagctaatt ctatattttg
    14161 aaaaatatgt tctacattcc aacagagttc gccgcgatgc tttatcgggg aattcgtaaa
    14221 tcgtactaac tcatttgcaa taatcttctc ttcaacaagt gaataagcca ctgctcttcc
    14281 tgatgtagcc cccaggtcaa tggcaagtac cgattgcatt ttcctcacct ccaacttgtt
    14341 accgctttca tatttttatt ttaagatatt aaatcttgat tttcaataga tgaacgaaaa
    14401 aatgaatttt gttcaaaatt cactgggtat atatttcact ttagttcatt ttatgttatt
    14461 atatacatga ggaggcttga tatgagcaga gacaaacgct taaaagaaat tacagatatt
    14521 cttcatacca aaaagagaat tgatgtcaaa cagctagaaa aattaacgtt ttcaagtata
    14581 tcaacccttc ggagggattt aatttattta gaagaacagg gattcctaac cagaaaacgt
    14641 ggtgaagtcg ttcttaattc ttttaatacc gttgaactag cccattcaat tagggaaacc
    14701 gaaaatagag atgctaaaaa aaaattgcag aacttgccaa ggactttatc ggtcctggta
    14761 tgtgcattta cttggactct agtacaactg tttatgaact ttgtccctat ctagctaaca
    14821 ttgataactt aattattttt acaaatggtt taaatactgc tcaaatgttg gcagacctag
    14881 caaatccaac aatgaaaatc ttcatcactg gtggtgaagt caaacaccac tccgcttctg
    14941 ttatcaacca taatagtgaa aataacctat taagtcattt ccgtattgat ttagcgttct
    15001 gttcagcccg tggtattgat gatgaatttg tctatgaagt ttcctttagt caagcattgg
    15061 ctaaaaagag tatcatcgat caagcaagag atacgatttt actcattgat agctcaaaat
    15121 ttaatcatac aggtttcttc aaaatcaata acttagaaca gtataaaacc attatttctg
    15181 ataactatcc tgataaaaca ttgctgaatg ccgctgacca actcaatgta gagtggatag
    15241 cttatgatta atagtacttc ttaacaaaac aatttagctt accgctctac aatataaaac
    15301 tgttgtagca agcacagtaa gtgggtaccc acttacgata aaattaacga agcagacgcc
    15361 tttggctctg cttttttcgt tatattttac ttgttaggga gaaccctaag accccgatag
    15421 aaaggaatag acaatggaaa aacgtacccg accaaaccaa ttaaaaattc gactttcaga
    15481 caaggaactt gctcaagtgc gagaaaaatt tggacaatct cggtcaaaat caatgcggca
    15541 ttttgttctc aagtgtatca tggaaacatc gatctatgaa gttgatatgc aaccatttag
    15601 agagttacaa catctccttt ccaagacttc cactaatgtc aaccaaattg ccaagaaggt
    15661 caataattac tcccttgttt ataaagagga ccttaagaca atccaaaacg aaatacacca
    15721 tttgagcaag gaactcaata aactacaaaa catactctac aacagaacaa atcaggggga
    15781 tatttgatat ggctgttact aaaattcacc ccattaaatc tactctgcat tttgcaatag
    15841 actacatcct tgagaagaaa aaaacagatg gtcaaacgct tatttcgaca cacatgtgtt
    15901 tccctaccac tgctcattta caattcttac aaactcgaaa agagaacaaa gtaaatggaa
    15961 cagtactagc tagacacctg attcaatcct tcttaccagg tgaagttgac caagaaactg
    16021 cccataaaat tggaatagaa ctctgtcaaa atatcttgaa agatgagtat gaatttgtac
    16081 taactactca tgttgacaaa ggccatattc ataatcatat tatttttaat aatgtcaatt
    16141 ttgaaactgg gaaatgttat caaagcaata aacgaaccta tcaccaaata cggtctacta
    16201 gtgatcgctt atgcaaaaaa tacaaattgt caattattga tgaacattac caaacttatc
    16261 gcacgaaata caaaaccaaa ggaaaatccc actatgagtg ggaacaaaac caaaatggta
    16321 aaggttggaa atcatattta caatttctta tcgacctaaa tatttcacgt tcgaactcat
    16381 gggacgactt tcttgaccgt atgaagaatt caaagtgcga aatcaaattt ggaaaacaca
    16441 ttgccttcaa atgtaaatat gcttctagat ttacacgctc taaaacgatt ggatccgact
    16501 atactgagga gagattgaaa gaaagaattg agaagaatcc gcctcatcaa cttatcgaca
    16561 caactaaaat tactgacaag aaaggtttag aattttgggc gagaaaacac aacttaaaat
    16621 ccatggcaaa aggtctagtt gaactgagaa acctaggtat tcaaacaaaa aatgatttag
    16681 aacttgccat cgaatctatt gctgataaac aaatcttgat tcaagatgaa gtaaagcaaa
    16741 ttgataaaga aatgacggaa cttggtaaga taatggaaaa tctacacgtc atacagaaga
    16801 ataaactcat ttatcatcat tatcagaaac aaccaaataa tcgccagttc ttaaaagaat
    16861 atcagaaaga aattactgcc tacaaaatgg ccaaacaaga cctttcacac aattataaat
    16921 cagccactcc aaaagacata ttatcccagt tagaacaatt gcaagaaaaa aagaataccc
    16981 ttatgacaga gtattctcaa ataaaatttc aattcaacaa actatatcag cacaagaaaa
    17041 atattgacta ttactttgaa actgaacaaa atcgcaatat ttaagatcat tcaccagcta
    17101 gataatccat ccgcttcttc catacaggta tagaaacaaa gtagaatagt atatagtaaa
    17161 atacatcatt agcaaggtca ttattcaaaa actgtaaccg ataggttgct tcaatgtttg
    17221 aattaaagat tgataatagg gaagttatga aatcagttgt caaacaaata cctatcccta
    17281 caccaaaata tactatcacg aaattgataa tcttacttac ctttggcaag taaatggtca
    17341 acaacaacat tagaaaacca tagaccacga ctgaagccaa tccaaacaaa acatcccaaa
    17401 aataagtcat atttccgcta gaaattttac tagatactgg tccgtgtaaa agataaattg
    17461 tatagataaa tactgcaacg aaatcaattg caaaacaagt aagcttaaca gaagtctttg
    17521 caatgaaaaa gaaaagacaa attgttgcaa caataattac cccatataaa ctcaacaaaa
    17581 tcataacagt atcactcctt tcgcacttct agtttactgc atttatcata ttttgtccgc
    17641 tcattatatg gaatggtcga attatttttt aaactaatac ttgtcaaaat tcaaaaaata
    17701 ttttatactt tgtgtaagtt tataaactga caaagaaagg agtaatcatg ttctctccaa
    17761 aaaaattaaa agaaaaaaga acagaattag gtttctcaca agctgaaata gcacgaaaac
    17821 tgaatattag tcgcatgtct tttagtgcct gggaaagcgg aaaaaccaaa ccaaatcaga
    17881 agaatctttc catacttgct gatattttcg acgtagagga atcttttttt gaatctgaat
    17941 atactatcgt tcaaaactat cttctactca cagatgaaaa taaattagct gccgaggatt
    18001 atgttgaaca actgttagca tctcaatcca ttgctgaaaa tgttgtgtca ctgttctcct
    18061 atcaggtgct ttctgaagtt caattatctg ccggaccagg tgaaagttta tttgatgagt
    18121 atgaaacaga aactgtttat tcagaagatg aatattcagg ttttgatata gcaacttgga
    18181 tttctggtaa ctcaatggaa cctgtttaca aagacggaga ggttgcgttg attcgagcga
    18241 ctggatttga ttatgatgga gcagtctatg ctttacagtg gaatggctct ctctacatca
    18301 agaaactcta tcgtgaggaa gatggtttcc gaatggtttc catcaatcca gatgttgctg
    18361 tgaaattcat ctcatttgaa gatgaaatca gaattgttgg caaggttgta gggcacttca
    18421 tgccggtgat tggaggttag agatgtcaaa gtttgttaaa gaaatgatct acttcaagga
    18481 agaccgcatt atcttatctc ttgaaaaaaa agaatacgac gtaacagacc atctgacaga
    18541 attggtcgtt gaactagcaa aattaaaaat aaggtgaata gtatgggcta tatcgactat
    18601 tcaaaagaac cacgtagcga tattgctttt gttgatatga aatccttcta cgcatccatc
    18661 gaatgtgtag agagaggact tcacccgctc catacttcac tttgtgtcat gagccgtgca
    18721 gacaactcgg caggattgat tctcgcttct tctcctatgt ttaagaaaat cttcggaaaa
    18781 gcaaatgtag gtcgttccta cgacttgcca ttcgatatca acactcgtaa attcgctatc
    18841 agaatgggtg gaaacagggt cttgaggtaa caccgaagta taaatctttt atagaacatt
    18901 gggcaaagcg tacactcatt gttcctccac gcatggacag atatattgag aagaatctag
    18961 agattcagca tatctttcaa gactatgctg ctccagatga cattctcccc tattcaatcg
    19021 atgaaggctt tattgacctt actagctcac tctcttactt tattactgat aagtcaatgt
    19081 caaggaaaga taagttagat aatatttcgg ctatggttca gagagatatt tatcgtaaaa
    19141 caggtattat ttcaactgtt ggaatgagca attccaatcc tcttctagct aaactagctc
    19201 tagataatga agctaagaaa actgctacaa tgagagctaa ctggtcatac gaagatgtag
    19261 aaaccaaggt atgggccatt ccaaatttaa cagacttttg ggggattggt agtaaaactg
    19321 agattcattt acaaaaactt ggtattcatt caatcaaaga actggctaat ttcaatcctg
    19381 atat
//
LOCUS       DASFRC010000024        18906 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.024, whole genome shotgun sequence.
ACCESSION   DASFRC010000024 DASFRC010000000
VERSION     DASFRC010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 18906)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18906)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18906
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.024"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..627)
                     /gene="upp"
                     /locus_tag="U1087_000601"
     CDS             complement(<1..627)
                     /gene="upp"
                     /locus_tag="U1087_000601"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002883819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HEM4755105.1"
                     /translation="MGKFQVISHPLIQHKLSILRRTSTSTKDFRELVNEIAMLMGYEV
                     LRDLPLEDVEIETPITKTVQKQIAGKKLAIVPILRAGVGMVDGLLSLVPAAKVGHIGM
                     YRDEETLQPVEYLVKLPEDIDQRHIFVVDPMLATGGSAILAVDSLKKRGASNIKFVAL
                     VSAPEGVKALQEAHPDIDIYTAALDEKLNEKGYIVPGLGDAGDRLFGTK"
     gene            complement(710..2326)
                     /locus_tag="U1087_000602"
     CDS             complement(710..2326)
                     /locus_tag="U1087_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase"
                     /protein_id="HEM4755106.1"
                     /translation="MSEIQKTDWWKKSVIYQIYPRSFQDSNGDGIGDIRGIISRLDYL
                     HELGIDAIWLSPVYQSPMDDNGYDISDYQGIAPEFGTMEDMEELIAEGHKRNIKIIMD
                     LVLNHTSDEHFWFQEALKGPDNPYYDYYVWADEPNELRSTFSGSAWEYVPHLNKYYLH
                     QFSVKQPDLNWKNPALKQEIWDMINFWIEKGVGGFRLDVIDLIGKEPEKLITADGPTL
                     HPLIQELNEKTFGAYDLVTVGETWSANPENAQLYSHPDRKEFSMIFQFEHVGLDQQEG
                     KEKWDLAPLDPARLHKVLSKWQTELVGKGWNSLFWNNHDLPRAISRFGDDRPAFRELS
                     GKMLAIYLHFMSGTPYIYQGEEIGMINTPITDISQADDIETRRMYAERIENGFTKEEL
                     ITSINAKGRDNARRPIQWTGAKGAGFSTGQAWLALGDTVKDINVEKALADKQSLFYTY
                     QKLIALRKEYPCMSEGKYEVMETGNSLVMAYRKYDEQDDFIILVNFTSDEQAFDVSSE
                     GYSMFMHNYENGVNLDENVLRPFEAIVFKK"
     gene            complement(2399..3847)
                     /gene="gtfA"
                     /locus_tag="U1087_000603"
     CDS             complement(2399..3847)
                     /gene="gtfA"
                     /locus_tag="U1087_000603"
                     /EC_number="2.4.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sucrose phosphorylase"
                     /protein_id="HEM4755107.1"
                     /translation="MKIKNQAMLITYSDSLGKNLKDLKKVLEGPLKDVVGGIHILPFF
                     PSSGDRGFAPMDYTKVDPAFGDWSDIEALSKDYYLMFDFMINHISAKSPYFLDFLEKK
                     DESAYADLFIRYKNFWPNGEPTQEDVDLIYKRKPRAPYRIATFADGSEEKVWCTFDEQ
                     QIDLDVTTETTRRFIQENLEQLAEHGASIIRLDAFAYANKKLGTNCFFVEPDIWEMLH
                     FPRQLLAPKDVEILPEIHEHYTIQQKIAEQDYYVYDFALPMLVLHALYSGHVNRLVHW
                     MEICPRKQFTTLDTHDGIGVVDVKDLLTDEETEETREALYAQGANVKKIYSTEAYNNL
                     DIYQINCTYYSALGNNDQAYLLARVLQCFAPGIPQIYYVGLLAGENDIELLESSKEGR
                     NINRHYYDLEEIEQEVQRPVVQSLFKLLKFRNTSPAFDGEFSVKMLDETSMEIFWNNQ
                     DAGVSARLTANLKEKSFEIVEIEEGKITTIEL"
     gene            complement(3917..4747)
                     /locus_tag="U1087_000604"
     CDS             complement(3917..4747)
                     /locus_tag="U1087_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM4755108.1"
                     /translation="MNTQKQKNWWVYLVLFSGILFMFIPLLVTIISSFKPTKEITSNF
                     FGLPENFTLNNYERLFNDGIVQYFGNSALITIVAVGLILLVIPMAAFAVARQMKRQTV
                     FNFIYFFLIIGIFVPFQVIMLPMTKLMSSLGLNNIVGLIILYLTYAVPQALFLYVGYI
                     KTIVPEEMDEAAAIDGCDKFTMYWKIIFPLMKPMHATVLIINALWVWNDFLLPLLVLN
                     RDQSMWTLPLFQYNYQGMYFSDYGPSFASYVVGIIPILLVYLIFQKHIISGMTSGSVK
                     "
     gene            complement(4758..5630)
                     /locus_tag="U1087_000605"
     CDS             complement(4758..5630)
                     /locus_tag="U1087_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM4755109.1"
                     /translation="MNQKGFIAKYWPYLFVAIPIGLQLIFFFYPLLTGIYYSLTDWNG
                     LTSDFSLIGVQNYLDILKNPDFYTSMTFTIIFTIGLVIGEIVIGIWLASLLNRKIKAV
                     GFFRTWYFFPAVLSTVTLGLIFVQLFNYGFTQIGEILHIDWLMENLLVQENTVIPAVL
                     FVALWQGLAMPVIIFLSGLQSIPEDVKEAAAIDGATRSQQFFNIELPFLLPSISMVFI
                     LAMKSGLTAFDLIFALTSGGPDGKTESLGLLVYNYAFVDNKFSYANALAVVLFIFIIV
                     ISLIQMRISKKFEI"
     gene            complement(5768..7003)
                     /locus_tag="U1087_000606"
     CDS             complement(5768..7003)
                     /locus_tag="U1087_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEM4755110.1"
                     /translation="MKMKTFLKCASVCAFASFLVACGNASSSDKVEIEYFSQKPEMQA
                     TLQEIIDDFEKENPTIDVKFSNVPDAGTVLKTRMANNEAPDVINIYPQNADFKAYAAD
                     GRFLEIGDDAGLSHLKDGAVTPYLVNEKNYTLPLTANAYGIYYNKDKFKELGLEVPTT
                     YAEFVALVDKIKADGSAAPFALSLNDAWSLNGYHQLAWVTVAGGFDGAEDILIRSAKG
                     AIQDDATTKAVLERLQLLKDNGQKGATGALYADAVAAFAAGDALMLPQGTWAATAVNQ
                     QEPEFEYGMFTFPGDKEGGDYTIGAADLALSISADTEHPEESKKFLEYLSRPEVIQKY
                     YDVDGSPTSVEGVDTEGKFEETAGVTQYAFTDKHVVWLQSEWESEDEFWNITVEMVKN
                     PNSAELVKKLNAFFDPMKK"
     gene            complement(7017..9191)
                     /locus_tag="U1087_000607"
     CDS             complement(7017..9191)
                     /locus_tag="U1087_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-galactosidase"
                     /protein_id="HEM4755111.1"
                     /translation="MNVIEIYNEKQIFHLKTREFSYIIQVLETGDLVHRYFGKKIEKF
                     SDGNKITYLDRSFSPSPITGDRTYSLDVLPLEYSSNGLGDFRTSALDVRNEFGVTLDL
                     KYKEYRLYKGKKELRGLPASFGNQEEVESLEIDLYDQLTDVTVTLQYSVFEEASYLAR
                     SATIQTGKYPCKLEKVLSATLDFPHQDFIVHSLAGRYAYEKEWTQTPLTKGQYSIGSI
                     RGASSHSRTPFLALASPDASEDKGDVYAAHLVYSGNFTAFVETTAMETSRLGLGLESH
                     YFSWQLDKDDRFQTPEVLLSYTDKGFTGMTQNSHHFITKHLIRSSFVNKPRPILINNW
                     EATYFEFTEEKILQLAQVASRAGIELFVLDDGWFGKRNNDESSLGDWKVNLDKLPNGL
                     NGLADRINELGMKFGLWFEPEMISIDSDLYREHPDWAIRTEGRLPIYSREQLVLDLTK
                     QEVCDYIIDSVSSILESANISYVKWDMNRNITNIPEGLANDQRFEFHHRYMLGLYRVL
                     DHLTKRFPDILFESCAGGGGRNDLGIMYYMPQAWASDDTDAIERLSIQEGTSLIYPPS
                     SIGAHVSAVPNHQVGRITPLATRGNVAMMGGAFGYELDLTKLSEKELDEISQQIETYH
                     SIRETIQFGQLYRLKKTSNTWAANYVGQDKNQVVFTFVKILAKPEAPLLYVRLKGLDP
                     AALYECPQLGETFYGDELMNIGLTMPHVQNDYFSVQYIFNKI"
     gene            9297..10136
                     /locus_tag="U1087_000608"
     CDS             9297..10136
                     /locus_tag="U1087_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM4755112.1"
                     /translation="MNILNIYNELDSHNFDLNVDHYGAEQCDKGYSFGPTIRDNFVLH
                     FITKGKGKILVDGKTSYLAAGDLFILPKDVSIFYQADDIDPWTYIWVGFSGSRAKDLL
                     NQSQLLENYYLHSNLESPILGYMHQINHVQMHPIPSITELVLIGYLNQLLAALIEEFP
                     SETLIKPETQTKHYVQQAIKMIHNHYAHPIKVSEIADFLALSRSYLYKIFKQETGYSI
                     KDYILQVKMNRSCQLLEDASRSITEIAYSVGYQDPLTFSAAFKNYFHMSPTDFRNTQK
                     NKD"
     gene            complement(10168..11328)
                     /locus_tag="U1087_000609"
     CDS             complement(10168..11328)
                     /locus_tag="U1087_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEM4755113.1"
                     /translation="MTQYNFIDSPNRLSQHAEKWRKVETDKELLPLWIADMDFEPLPE
                     IRQVIRDYADHHVFGYPYASDSLYQSIIDWEDRQHGYKINRESILLIEGVVPALSVAI
                     QSLTEEGDAVLINTPVYPPFARTVKLNNRQLVTNSLVDVDGVFRIDFDQLEKDIVENQ
                     VKLYIFCNPHNPGGRVWTREEVLAIGRLCQKHGVILVSDEIHQDLTLYGHKHYSFNTV
                     DESFKEFSIILSSATKTFNIAGTKNSFAIIENPSIRKTFAKRQLINNQHEIPTIGLLT
                     TEAAFTYGDEWLKELKVILERNIDFVEEYLITHTRIKVMKPQGTYLIWLDFSAYELEH
                     AELFDILHCKAKLILNDGLTFGKEGKYHARLNVAVPFNMIEEACQRLGKVFG"
     gene            complement(11332..12423)
                     /locus_tag="U1087_000610"
     CDS             complement(11332..12423)
                     /locus_tag="U1087_000610"
                     /EC_number="2.5.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine gamma-synthase"
                     /protein_id="HEM4755114.1"
                     /translation="MTDYKIDTILAHTGINSDERTGALISPIHLSTTYQHPEFGQSTG
                     YDYTRTKNPTRASLETTLAAIEKADYALATSSGMAALVLLFNGFPVGSQVVAARDLYG
                     GSFRWFNEQESIGRFQFTYANTEEELIAAITEETDYVYLETPTNPLMVEFDIAKVSAI
                     AHAKGAKVIVDNTFYSPIYQNPLVLGADVVLHSATKYLSGHNDVLAGALMTNDQALYD
                     KLFYDQNTSGPTLSPLDSYLLMRGLKTLSLRMERATQNAQKIVAYLEKSPAVKQVYYT
                     GKGGMISVKVVDESRIPHILNTLKVFTFAESLGGVESLITYPATQTHADIPAETRHSY
                     GLTDDLLRLSIGIEDAEDLIVDLKTALEG"
     gene            12626..12892
                     /locus_tag="U1087_000611"
     CDS             12626..12892
                     /locus_tag="U1087_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755115.1"
                     /translation="MKFQFNKHFYRYSAFYSMIFWTCFFLSDILLDPSQTPAWYSLLA
                     SMIILIHAIRTFFFKEEKELTRMGYIFYIGLIVVIIYLKFILGK"
     gene            12906..13160
                     /locus_tag="U1087_000612"
     CDS             12906..13160
                     /locus_tag="U1087_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755116.1"
                     /translation="MSKKFNKAFYRTWEFYLSLACILQVISAAVNGPFWFIHFLKLGL
                     GLYAGYLAFFKSRSWIKKTWQIYLTIGLIASWTIISFFVL"
     gene            13170..13421
                     /locus_tag="U1087_000613"
     CDS             13170..13421
                     /locus_tag="U1087_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755117.1"
                     /translation="MFKEFNKEFYRSFNFYLMILLLLGSIGEWLDKGPTLWLGLLLFA
                     SVGTARSAFWSKEWMLRANWQIYLCIAFLLVGAWVEFFI"
     gene            13501..14250
                     /locus_tag="U1087_000614"
     CDS             13501..14250
                     /locus_tag="U1087_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002929756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HEM4755118.1"
                     /translation="MQKIELLDGERIDQLFSTDVQIIQNREVFSYSIDSVLLSRFPKM
                     PAQKGLIVDLCSGNGAVGLFASTRTKAQIIQVELQERLADMNRRSIALNGLEEQVSII
                     NDDLANLPQYDLRSKVDLMLCNPPYFKVDKESNLNESEHYLLARHEIATNLDSICQVA
                     QQVLKSNGRLAMVHRPDRFLDILDTLRTYKLAPKRIQFVYPKSSKEANMLLIEAIKDG
                     SVDGLHILPPLVVHEENGDYTPAIREIYYGK"
     gene            14240..14509
                     /locus_tag="U1087_000615"
     CDS             14240..14509
                     /locus_tag="U1087_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HEM4755119.1"
                     /translation="MENKAYFYVLECADGSLYTGYTTDVEKRLATHNRGKGAKYTRGR
                     LPVSLLYQEAFASKQEAMSAEALFKKRSRQSKLDYIAERKQENAK"
     gene            14499..14867
                     /locus_tag="U1087_000616"
     CDS             14499..14867
                     /locus_tag="U1087_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two pore domain potassium channel family
                     protein"
                     /protein_id="HEM4755120.1"
                     /translation="MQNKKHIHRLRIIWHILRVTGFATFLTSFFSFIFLAAGLLLWLE
                     PDFTSYGDSLWYSFVTATTVGYGDMLVTTAFGRIISIILAIYGILFLGSLSGLVVSYY
                     TEVSKHYSLAIKQDKQKTGS"
     gene            complement(14879..15490)
                     /locus_tag="U1087_000617"
     CDS             complement(14879..15490)
                     /locus_tag="U1087_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEM4755121.1"
                     /translation="MANLLIVKAHPLDAQKSYALRALEEFQTRYASLHPEDRIEIVDV
                     FEDQIPALDKPLLEAMGAAKRGEAISPEQAEQLGRYNALTQQFLAADKIVVVNPLWNL
                     NVPSQLVSWINTINVAGLTFKYGPEGSIGLVKGKKLLHIQSNGGVYAGQDPAAQYIKS
                     IFEFLGFEDIHQVFIEGQSADPSQSQAIFEEAIAKIDQILESY"
     gene            complement(15622..16029)
                     /locus_tag="U1087_000618"
     CDS             complement(15622..16029)
                     /locus_tag="U1087_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM4755122.1"
                     /translation="MITYKQNPQLDFQAVLGIYDSVGWTNYTDRLTMLQKVLKHSLFV
                     LAAFDGDRLVGLLRAVGDGYSIMFIQDILVLPAYQRQGIGRQLLEQAVTHFPGIYQLH
                     LLTDNTEKTRSFYEAIGFTAVDSLDCVAYTYLK"
     gene            complement(16140..16739)
                     /locus_tag="U1087_000619"
     CDS             complement(16140..16739)
                     /locus_tag="U1087_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1648 domain-containing protein"
                     /protein_id="HEM4755123.1"
                     /translation="MKKIDIKTLLATSSIFLLIAVLMICYYKALPNTMVTHFGVNGES
                     NGSMAKYMMILTPLSFFCVHLFICVLYDVRGIGKTPVIRVVKWLFPLLALIIQVALLR
                     FNLGGELDYQRLVIGLLAVYYMVIGNYLPKEELDSKTNEIERKGRKYVGYFSIIGGLL
                     LLVSLLGSPALSILVMILVGISVVSLSIYYAYLHFKAAS"
     gene            complement(16726..17004)
                     /locus_tag="U1087_000620"
     CDS             complement(16726..17004)
                     /locus_tag="U1087_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM4755124.1"
                     /translation="MGLSETLKAISAPIRRQILDGLKSGPKSAGEIVEQFQLTGATVS
                     HHLSTLKKAGLILEEKQKNFIYYRLNYTVFEEVLVWIASFGGQQDEEN"
     gene            complement(17149..18729)
                     /locus_tag="U1087_000621"
     CDS             complement(17149..18729)
                     /locus_tag="U1087_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000673092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM4755125.1"
                     /translation="MKFTDLQLSEDILLAVEKAGFETPSPIQEQTIPLALEGKDVIGQ
                     AQTGTGKTAAFGLPTLNKIDTNNQAIQALIIAPTRELAVQSQEELFKFGREKGVKVRS
                     VYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLDGVETLILDEADEMLNMGF
                     LDDIEAIIERVPESRQTLLFSATMPEPIKRIGVKFMKEPEHVKIAAKELTNVNVDQYY
                     LRVKEHEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQN
                     KRLRVIRDFKNDQIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG
                     QSGQSITFVSPNEMGYLAIIEELTKKRMKGLKPATAEEAFEAKKKVALKKIEREMADE
                     TIRSNFDKFKKDAIQLAAEFTPEELALYVLTLTVQDPESLPEVEIAREKPLPFKFAPG
                     QAKGKGGRGGRDRDRGGRRDGDRNRDRGGRRGDRNDRNRRDDKFKRDNRRQDNKKPHQ
                     RTSSEKKTGFVIRNKGER"
BASE COUNT         5495 a         4079 c         3621 g         5711 t
ORIGIN      
        1 ttttgtaccg aacaagcggt cacctgcatc tcccaaacct ggtacgatgt agcctttttc
       61 attgagtttt tcatccaagg ctgccgtata gatatcaata tctggatgtg cttcttgaag
      121 agcttttaca ccttctggag ctgaaacaag agcaacaaat ttgatatttg aagcaccacg
      181 ttttttcaat gaatccactg caaggatggc tgaaccacct gtagcaagca ttgggtcaac
      241 tacaaaaata tgacgttgat caatatcttc tggtaatttc acaagatact caacgggttg
      301 aagggtttct tcatcgcggt acataccgat gtgaccaact ttagctgctg gtaccaagct
      361 tagcaaacca tcaaccatac caacacctgc acgaagaatt ggtacgatag ctaatttttt
      421 acctgcaatt tgtttctgaa ctgttttagt gattggcgtt tcaatctcca catcttcaag
      481 tggcaagtca cgcaaaactt cgtaacccat cagcatcgcg atttcattaa ccaactcacg
      541 aaaatccttt gttgaagtag atgtacgacg aaggatagac aacttatgct gaatgagtgg
      601 gtgtgaaatg acttggaatt tacccatgat gataaaacct ctcttttttg ttttttctat
      661 tttaccaaaa attcatgaaa aaagcatggg aaaagaaaaa ctgagtaact tattttttaa
      721 aaactatcgc ctcgaaaggt ctcagaacat tctcatccaa attgacacca ttttcgtaat
      781 tatgcataaa catggaatac ccttcacttg atacatcgaa ggcttgctca tcacttgtga
      841 aatttaccag aatgatgaaa tcatcctgtt catcatattt acggtaggcc atcaccaagc
      901 tatttccagt ctccatcact tcatattttc cttcagacat acaaggatac tctttccgaa
      961 gagcaattaa tttttgatag gtatagaaaa gcgattgttt gtctgcaagt gctttttcaa
     1021 cgttgatgtc tttgacagta tctcccaaag ccagccaggc ttgacctgta ctgaagccgg
     1081 ctccttttgc tcctgtccat tgtattggac gacgagcatt atcacgacct ttggcattta
     1141 tagaagtaat caattcctcc ttggtgaagc cattttcaat ccgttccgca tacatgcgac
     1201 gtgtttcaat atcgtccgct tggctaatat cagtaattgg tgtgttaatc ataccaattt
     1261 cctcaccttg gtagatataa ggtgtccctg acataaaatg aagataaata gctaacattt
     1321 taccacttag ttcacgaaat gcaggtcgat catcaccgaa gcgagaaatg gcacgaggta
     1381 aatcgtggtt attccagaaa agcgagttcc agcctttacc aaccagttca gtctgccatt
     1441 tggatagaac cttatgcaaa cgtgctggat caagcggtgc caaatcccac ttttctttcc
     1501 cttcctgctg atcaagtccg acatgttcaa attggaaaat catcgaaaat tcttttcgat
     1561 caggatgcga atataactga gcattttctg gattggcact ccaggtttcc ccaacagtca
     1621 ctaagtcgta agcaccaaag gttttctcat ttaattcctg aataagagga tggagagttg
     1681 gtccatcggc tgtaattaat ttttctggct cttttccaat caaatcaatt acatctaacc
     1741 tgaaaccgcc gacacctttt tcaatccaaa aattgatcat atcccagatt tcttgtttca
     1801 gagcaggatt tttccagttc agatctggtt gcttaacaga gaattggtgg aggtagtatt
     1861 tgttcagatg tggaacgtac tcccaagcag agcctgagaa ggtcgagcgt aattcattcg
     1921 gctcatcagc ccaaacataa taatcataat agggattatc tggtcctttg agggcttctt
     1981 gaaaccagaa atgttcatcc gaggtatgat tgagaactaa atccatgatt attttgatgt
     2041 tgcgcttatg gccttctgca atcagctctt ccatatcttc catggtccca aattctggag
     2101 caattccttg gtaatcactg atgtcgtaac cattgtcatc cataggggac tgatagactg
     2161 gactgagcca aatagcatca attcctagct cgtgaagata atctaatcgg ctgataatcc
     2221 ctcgaatatc tccaattcca tctccatttg aatcttgaaa actacgagga taaatttggt
     2281 aaatgacgga cttcttccac caatctgttt tttgtatttc tgacatttga ttaatccttt
     2341 ctgtgcaatc ttatttacgc aagaaaaagg ggaatccccc tatttctata taatcatatt
     2401 ataactcaat tgtggtaatt tttccctctt caatttcaac aatttcaaag gatttttctt
     2461 ttaggtttgc tgttagacgg gcagacaccc ccgcatcttg attattccag aaaatttcca
     2521 tacttgtttc atccagcatc ttaacagaga actctccgtc gaaagctgga cttgtattgc
     2581 ggaatttaag gagtttgaac aaggattgta caactggccg ttgcacttcc tgctcaattt
     2641 cttccaaatc atagtaatgg cgattgatat tgcggccttc cttgcttgat tccaaaagct
     2701 caatatcatt ttcgcctgct agtaaaccaa cgtagtaaat ctgtggaata cctggtgcaa
     2761 aacattgaag aacacgcgcc aacagataag cttgatcgtt attgccaagg gcagaataat
     2821 aagtacagtt aatctgataa atatccaaat tattataggc ttctgtacta taaattttct
     2881 tgacattggc accttgtgca tacaaggcct cacgcgtttc ctctgtctcc tcatccgtca
     2941 gcaaatcctt aacatccaca acaccgattc catcatgtgt atcaagagtt gtaaattgct
     3001 tacgagggca aatctccatc caatgcacca ggcgattgac atgaccagaa tacaaagcgt
     3061 ggagaaccag cattggcaag gcaaagtcat aaacataata atcttgctcg gcaattttct
     3121 gctgaatggt atagtgttca tgaatttctg gtaagatttc cacatctttt ggcgccaata
     3181 actgacgtgg aaaatgtagc atttcccaga tatcaggctc cacaaagaaa caattggttc
     3241 cgagtttttt attggcataa gcaaaggcat ccaaacgaat gatcgaagca ccatgttctg
     3301 ccaattgttc cagattttct tggatgaaac gacgggttgt ctccgttgtc acatctaagt
     3361 caatctgttg ctcatcaaag gtacaccaca ccttctcttc actaccatca gcaaatgttg
     3421 caattcgata tggagcacgg ggtttacgct tatagatcaa atcaacatct tcttgcgttg
     3481 gctcaccatt tggccaaaag tttttataac gaataaacaa atccgcataa gctgattcat
     3541 ctttcttttc aaggaaatca aggaaataag gagattttgc cgagatatga ttaatcataa
     3601 aatcgaacat cagatagtag tccttactca atgcttcaat atctgaccag tctccaaatg
     3661 cagggtctac ctttgtataa tccattggtg caaacccacg gtcacctgat gatgggaaga
     3721 atggtagaat gtgaatacct cccacaacat cctttaatgg tccctcaaga acttttttca
     3781 aatccttgag attcttgcct aaactatcag aataggtaat caacatagct tggtttttaa
     3841 ttttcatcga cattctcctt tgtaagcctt ttctttttta ttttttagaa aaggttgaac
     3901 aagtcaacct ttgtaattat ttgacagaac cacttgtcat acctgaaata atatgttttt
     3961 ggaagatgag gtagacaagt aggattggga taattcccac aacatatgaa gcaaatgatg
     4021 gtccataatc actgaaatac atgccttggt aattgtattg gaaaagaggt aacgtccaca
     4081 tgctttgatc acgattcaaa accaagagcg gtaagagaaa atcattccag acccagaggg
     4141 cattgataat caaaacggtt gcgtgcatgg gtttcatgag cgggaaaatg attttccagt
     4201 acatagtaaa tttatcacag ccatcaatag ctgcagcctc atccatttct tcaggaacaa
     4261 tggtcttaat ataaccgacg tagaggaaga gggcctgagg aactgcatag gtcaaatata
     4321 gaataatcaa accgacaata ttgttcaaac caaggcttga cattaatttg gtcattggga
     4381 gcataatcac ttggaaaggt acaaaaatcc caataatcaa gaaaaagtag ataaagttaa
     4441 acactgtctg gcgtttcatt tgacgggcta ctgcgaaagc tgccattgga ataacaagta
     4501 gaatcaagcc aacagctaca attgtaatca aggcagaatt gccaaaatat tgtacaatcc
     4561 catcattaaa caggcgttcg tagttattta aggtaaaatt ttcaggaaga ccaaagaagt
     4621 tgctcgtgat ttccttggtt ggtttgaatg aacttataat cgtcacaagt agcggaataa
     4681 acatgaagag aataccgctg aagagcacga gatagaccca ccaatttttc tgtttttgag
     4741 tattcatgtc tgtcctccta aatttcaaat ttcttcgaaa ttctcatctg aatcaatgag
     4801 atgacaataa tgaagatgaa gagtactaca gccaaagcat tggcataaga gaatttgttg
     4861 tctacaaagg catagttgta aacgagtaaa cccaaggatt ctgttttgcc gtctgggcca
     4921 ccacttgtca gtgcaaagat aaggtcaaat gctgtcaaac ctgacttcat tgccaagatg
     4981 aaaaccatac tgatagatgg taataagaat ggaagttcaa tattgaagaa ttgttgagag
     5041 cgtgttgcac catcgattgc agctgcttct ttcacatctt ctggaatact ttgtaaacca
     5101 gacaagaaga tgatgactgg catagccaac ccttgccaga gagcaacaaa gagtacggct
     5161 ggaattacag tattttcttg taccaataag ttttccatca accaatcgat atgaaggatt
     5221 tctccaatct gtgtaaaacc atagttgaac aattgaacaa aaatcaagcc taaagtgact
     5281 gtggatagca ctgctgggaa gaaataccat gttctaaaga aaccaaccgc cttaatctta
     5341 cgattgagga gactagccaa ccaaatccct ataacaattt ctccgatgac caaaccaatg
     5401 gtgaagataa tggtaaaagt catagacgta taaaaatcag gattcttcaa gatatctaga
     5461 tagttttgaa cgccaatcaa gctgaaatct gatgtcaatc cattccaatc cgtcagacta
     5521 taatagattc ccgttaataa gggatagaag aaaaagatta actgtagacc aattggtatg
     5581 gcaacaaata gatagggcca atatttggca ataaaacctt tttgattcat catgatactc
     5641 cttttttcta taatgtatag ttgcttaggg acagtttgaa tggagtggtt aggggggatt
     5701 caaactgacc ctaagcaact ataaagaaga gctaggctgt tctagccctc cttatagttt
     5761 tcttgaatta ttttttcatc ggatcaaaga atgcattcag ttttttcact aattctgctg
     5821 agtttggatt tttaaccatt tcaacagtga tattccagaa ctcatcttct gattcccatt
     5881 cagattgcaa ccaaactacg tgtttgtcag tgaaggcata ttgtgtcact ccagcagttt
     5941 cttcaaactt accttctgta tctacacctt caactgaagt tggtgagcca tctacatcat
     6001 agtatttctg gataacttct ggacgagaaa ggtattctag gaatttttta gactcttctg
     6061 ggtgctctgt atctgctgaa atagatagag caaggtcagc tgcaccgatg gtatagtcgc
     6121 caccttcttt atcgccaggg aaggtaaaca taccatattc aaattctggt tcttgttggt
     6181 ttacagctgt agctgcccat gtaccttgtg gaagcatgag agcatcacct gctgcaaagg
     6241 ctgccaccgc atctgcatag agcgcgcctg ttgccccttt ttgtccattg tctttcaaca
     6301 attgtaagcg ttctaaaact gcttttgttg tcgcatcatc ttgaatcgct ccctttgcac
     6361 tacgaatcag aatatcttct gcaccatcaa atccacccgc aacagttacc caagctaact
     6421 gatggtagcc gttcaatgac caagcatcgt tcaatgaaag agcaaacggt gctgcactgc
     6481 catcagcctt gattttgtct accaaagcca caaattctgc ataggtagtt ggaacttcga
     6541 gccccaattc tttgaactta tccttattat agtaaatacc ataggcattt gctgtcaaag
     6601 gaagggtgta atttttttca ttaacaagat atggcgttac agcaccatct tttagatgac
     6661 tgagacctgc atcatctcca atttctagga aacgaccatc cgctgcgtat gctttgaagt
     6721 ccgcattttg tggataaatg ttgatgacat ctggcgcttc gttatttgcc atacgggttt
     6781 tcagaacagt tcctgcatct ggtacatttg aaaatttaac atcaatcgta ggattttctt
     6841 tttcgaaatc atcaataatt tcctgaagag tagcctgcat ttcaggtttt tgtgagaaat
     6901 attctatttc taccttatcg ctactacttg cattcccaca agcaaccaag aagctggcaa
     6961 aggcacaaac tgacgcacat tttaaaaatg ttttcatttt catatataaa atcctcctag
     7021 attttgttaa aaatatattg tacactaaaa taatcatttt gaacatgggg catggtgagt
     7081 ccaatgttca tcaattcatc cccgtagaaa gtttccccta attgagggca ttcatatagg
     7141 gcagctgggt ctagcccctt caaccgaaca taaagcaaag gcgcttctgg cttggcaaga
     7201 atttttacaa atgtaaagac cacttgattc ttatcttgac caacataatt ggcagcccag
     7261 gtattgctcg tctttttcag acggtagagc tgaccgaatt ggatagtttc acgaatggag
     7321 tgataggttt cgatttgctg actgatttca tccaattcct tttccgaaag tttcgttaaa
     7381 tccagctcgt aaccaaatgc tcctcccatc attgccacat tgcctcgtgt agcaagaggt
     7441 gtgatccgac caacctgatg gttcggaacg gcagaaacat gtgcaccaat tgaggaaggg
     7501 ggataaatca aactagtacc ttcttgaata gataagcgct caatcgcatc tgtatcatca
     7561 cttgcccaag cttgtggcat gtaatacatg attcccaaat cattacgacc tccaccgcct
     7621 gcacaggatt cgaaaagaat atccgggaac cgctttgtga ggtggtctaa tacacggtag
     7681 agacctagca tgtaacgatg gtggaactca aagcgctggt catttgctaa accttcaggg
     7741 atattggtga tattacggtt catatcccat tttacataag aaatattggc tgattctaat
     7801 atggaagaga cgctatcaat gatgtagtca cagacttcct gcttggtcaa atccaaaact
     7861 aattgttctc ggctgtagat tggtaagcgt ccttctgtgc gaattgccca atcaggatgc
     7921 tcacgataaa gatcgctatc aatagaaatc atctctggtt caaaccacag tccaaatttc
     7981 atgccaagct catttattcg gtctgctaaa ccattcaaac catttggcaa cttatccaaa
     8041 ttgactttcc aatcgcccaa tgaactttca tcattgtttc gtttaccaaa ccaaccatca
     8101 tccagaacaa acaattcaat accagctcga cttgcaacct gagctaactg taaaatcttt
     8161 tcttctgtaa attcaaaata ggttgcttcc cagttgttga ttaaaatggg ccttggtttg
     8221 tttacaaacg atgatcgaat gaggtgtttt gtgataaagt gatgactatt ttgtgtcata
     8281 ccagtaaatc ctttatcagt gtatgataag agaacttctg gagtttgaaa ccggtcatcc
     8341 ttatccaatt gccatgagaa atagtgactt tccaatccta gtcccaatcg actggtttcc
     8401 atggctgtcg tttcgacaaa tgctgtaaag ttgccgctat agacaaggtg ggctgcataa
     8461 acatcgccct tgtcctcact tgcatcgggt gaggctagtg ctaagaaggg tgttcttgag
     8521 tgacttgaag cacctcgaat gctaccaatc gaatactgac cttttgtcaa tggggtctgt
     8581 gtccactctt tttcataagc ataacgtcct gccaagctgt gaacaatgaa atcttgatgt
     8641 ggaaaatcaa gcgttgcaga caagaccttc tctagtttgc atggatattt gccagtttga
     8701 attgtagctg accgtgcgag ataggaagct tcttcaaaaa cagaatactg aagtgttacg
     8761 gtaacatctg tcaactgatc gtaaagatca atttcaagac tctctacctc ttcttgattt
     8821 ccaaaacttg ctggtaatcc cctcagttct tttttcccct tgtataatcg atactctttg
     8881 tattttaggt caagagtgac tccaaattcg ttccgaacat ctaatgctga ggttctaaaa
     8941 tctcccagac cattgctgga atattcgagt gggaggacat ccaatgagta tgtcctatcc
     9001 ccagtaattg gactcggaga aaacgatcga tctaaatatg ttattttgtt tccatcgcta
     9061 aatttttcga tttttttccc aaaataacga tgaaccagat cgcctgtttc caacacttgg
     9121 atgatataag agaattctct tgttttcagg tgaaaaatct gtttttcatt ataaatctca
     9181 atcacattca tctctcccat ctcttcttta tgctattatt ttacaaaatg aaaacgcttt
     9241 atttaatggt cttttgtatt taaaacatgt tataatgttt cctaaggagg attgaaatga
     9301 atattctgaa tatctataac gagcttgata gtcacaactt tgacctaaat gtagaccatt
     9361 acggtgccga acaatgtgac aagggctatt ccttcggtcc tactatccgt gataattttg
     9421 tcctgcattt tattacaaaa ggaaaaggga aaattcttgt tgacggaaaa acaagctacc
     9481 ttgctgcagg cgatttgttt attcttccaa aggatgtttc cattttctat caagctgatg
     9541 atatagaccc gtggacctat atatgggttg gttttagtgg ttcacgagca aaagacctac
     9601 ttaatcaaag tcaactgcta gaaaactact acctccactc caatctagag tcaccaattc
     9661 taggctacat gcatcagatt aaccatgttc agatgcatcc catcccctct atcacagaat
     9721 tggtcttaat tggctacctc aaccaactct tagcagcact catcgaggaa tttcccagtg
     9781 aaacattaat taagcctgaa acacaaacca agcactatgt tcagcaagcc atcaagatga
     9841 tccataacca ctatgcccat ccaattaaag tttctgaaat agcagatttt ctagctttaa
     9901 gccgaagcta tctctataaa atttttaagc aggaaactgg ctattctatc aaagattata
     9961 ttttacaagt aaaaatgaat cgttcttgtc aactattaga agatgcttct cggagtatca
    10021 ctgaaatcgc ctattctgtc ggataccaag accctctcac cttcagtgcg gccttcaaaa
    10081 actatttcca tatgagccca acagatttta gaaatacaca aaaaaataag gattaggtga
    10141 ttttactcac acctagtcct tatttcttta tccaaaaacc ttaccaagtc gctgacaagc
    10201 ttcttcaatc atgttgaatg gtactgctac attcagacgt gcatgatact taccttcctt
    10261 accaaaggtc aaaccatcat tcaaaatcaa cttcgcttta caatgaagaa tatcaaagag
    10321 ctccgcatgc tctaactcat aagcagaaaa atcaagccag atgaggtagg ttccctgggg
    10381 cttcatgacc ttgatccttg tatgggttat caaatactcc tcaacaaagt ctatatttct
    10441 ctccaaaata accttcaact ccttcaacca ctcatctcca taagtgaaag cagcttctgt
    10501 ggttaacaag ccaatcgttg gaatctcgtg ctgattattt atcaattgac gcttagcgaa
    10561 agtcttgcgg atgcttggat tttcaatgat tgcaaagcta ttttttgtac cagcgatatt
    10621 gaaggtcttg gtcgcagatg ataagatgat tgaaaactct ttaaaacttt catccaccgt
    10681 gttaaaggaa taatgcttgt gaccatacaa ggtcaaatct tgatgtattt catctgagac
    10741 aaggataaca ccatgtttct gacaaagacg tccaatagcc aacacttcct ctcttgtcca
    10801 aactctacca cctgggttgt ggggattaca gaaaatatag agtttcactt gattctctac
    10861 aatgtccttt tcaagctggt caaaatcaat cctaaaaaca ccatccacat caactagtga
    10921 attggtgact agctgacgat tgtttaattt tacagtccgc gcaaagggtg gatagacagg
    10981 tgtattaatt aggactgcat ccccttcttc tgtcaaagat tgaatagcca cagataaggc
    11041 aggaacaact ccttcgatga gcaggatgga ctctctatta atcttgtagc catgctgtct
    11101 atcttcccag tcaataatag actgatagag gctgtcacta gcatagggat aaccaaaaac
    11161 gtgatgatct gcgtagtcac ggataacttg gcgaatttct ggtagaggct caaagtccat
    11221 atctgctatc cacaagggta agagttcttt atccgtctct acttttctcc atttttccgc
    11281 atgctgggat agacgattcg gactatctat aaaattatac tgtgtcatat cttatccctc
    11341 caaggctgtt tttaaatcta caatcaagtc ttccgcatcc tctataccaa tagacagacg
    11401 aagcaaatca tctgtcaaac cgtaagaatg acgggtttca gctggaatgt ctgcgtgggt
    11461 ctgagtggct ggataggtaa tcagactctc tactccaccc agactttcag caaaggtaaa
    11521 gactttcagg gtgttgagaa tatggggaat ccgactttca tctaccacct taaccgaaat
    11581 catcccacct tttcctgtgt agtaaacttg cttgactgct ggactcttct ccaaataggc
    11641 aacaattttc tgagcatttt gtgtcgcccg ctccattcga agcgagaggg ttttgagtcc
    11701 acgcatgagt aagtaagaat ccagtggaga tagggttgga cccgatgtat tttggtcata
    11761 aaagagctta tcatataggg cttgatcatt ggtcatcaaa gcgccagcta gtacatcatt
    11821 atgcccagat aggtacttgg ttgctgaatg taggacaaca tccgctccta gaacaagtgg
    11881 attttggtag atagggctgt aaaaagtgtt atcgacaatc accttagcac ctttggcatg
    11941 ggcgatagcc gaaaccttag cgatgtcaaa ctccaccatg agtgggttag tcggtgtctc
    12001 cagataaaca tagtctgtct cttcggtgat ggctgcaatc agctcctcct cggtgtttgc
    12061 ataggtaaat tgaaatctac cgatactctc ttgctcattg aaccagcgga aggaaccacc
    12121 gtacaaatca cgcgccgcta ccacttgact ccctacagga aaaccattaa aaagtaagac
    12181 cagagcagcc attcccgagc tcgttgctag ggcatagtcg gccttttcaa tagctgccaa
    12241 agtcgtctct agactggcac gtgtcggatt ttttgttctc gtgtagtcat aacctgtcga
    12301 ttgaccaaac tcagggtgtt gataggtcgt cgaaaggtgg ataggggaaa tcaaggcacc
    12361 tgttctctca tcgctattga tgcccgtatg cgctaaaatc gtatcaatct tataatctgt
    12421 cataacatct actccaatct aacttacaat atagtctagc atgaaatagg agatttggtg
    12481 tgaaaaatat ccaaaaatac ttatagaaaa atagcaagct ttgctatagt ttttctttat
    12541 aacaataatc atactggatt taccaataaa tacttttaaa cctatacatt atttgatata
    12601 ataaaagaaa gagaggtgat ttgtcatgaa attccagttt aacaagcatt tctatcgtta
    12661 tagcgccttc tattctatga ttttttggac ttgttttttt ctgtcagaca tattgctaga
    12721 tccttcccaa acgcctgcat ggtatagcct attggcctct atgattattt taattcatgc
    12781 cattcgaacc tttttcttca aggaagaaaa agaactcact cgcatgggct acatcttcta
    12841 tatcggattg atcgtggtga ttatctatct gaaatttatt ttgggtaaat agaaaggagc
    12901 ttactatgtc taaaaaattc aataaagcat tctatcggac ctgggaattt tacttgtctc
    12961 ttgcctgtat cctacaagtg atttctgctg ctgtaaatgg accgttttgg tttatccatt
    13021 ttctcaagct tggactcgga ctttatgctg gttatctagc tttctttaag tcacgtagct
    13081 ggattaaaaa aacatggcaa atttatctga cgattggatt gattgctagt tggacaatca
    13141 tttccttctt tgtactgtga ggattttata tgtttaaaga atttaataaa gaattttatc
    13201 ggagttttaa cttttatttg atgatattgt tgttgcttgg tagcattgga gaatggttgg
    13261 acaaggggcc taccctctgg cttgggctct tgctctttgc ttctgtcggt acagcccgca
    13321 gtgccttttg gtctaaagaa tggatgttga gggcaaattg gcaaatctat ctctgcatcg
    13381 cattcttgct agttggggct tgggtagaat tttttattta aggattgagg gcgaagtatt
    13441 cgctctcttt ttgtttcaaa atatacagtg attttcattc aaagatggta taatatacct
    13501 atgcaaaaaa ttgagttatt agacggagag cggattgacc agctcttctc gacagatgtt
    13561 cagattattc aaaatcgaga ggtttttagc tactcgattg acagcgttct tctttcgcgg
    13621 tttccaaaaa tgcctgctca gaaggggctg attgtcgatc tttgtagcgg aaatggggcg
    13681 gtgggcctct ttgcctctac acgcaccaag gctcagatta ttcaggtcga gttgcaggag
    13741 cgactagctg atatgaaccg ccgttccatt gccctcaatg gtctggagga gcaggtttcg
    13801 attatcaatg acgacttggc aaacctgccc cagtatgatc tgcgctccaa ggttgatttg
    13861 atgctctgca atcctcccta tttcaaggta gataaagagt caaacctcaa tgaaagcgag
    13921 cattatcttc tagccagaca cgagattgcg accaacctag acagcatttg tcaggtggcc
    13981 caacaggtgc tcaaatccaa tggtcgcttg gccatggtcc acaggcccga ccgattttta
    14041 gatattttgg acacactaag aacctacaag ctggctccca aacgcatcca gtttgtctat
    14101 cccaagtcca gcaaggaggc caatatgttg ctgattgagg ctatcaagga cggctcggtg
    14161 gacggtctgc acatcctgcc acctctggtt gtccatgagg aaaacggcga ctatactcct
    14221 gccattcgtg agatttatta tggaaaataa ggcctacttt tatgtcttgg aatgtgccga
    14281 cgggagtctt tatactggct atacgactga tgtggagaag cggcttgcta cccataatcg
    14341 tgggaaaggg gccaagtaca cccgcggacg cttgcctgtc agcttgctct atcaagaagc
    14401 ctttgctagt aagcaggaag ccatgtctgc cgaggctttg tttaagaaac gcagtcggca
    14461 gagtaaatta gattatatcg cagaaagaaa acaagaaaat gcaaaataaa aaacatatcc
    14521 accgccttcg catcatttgg catatcttga gagtgactgg ttttgccact tttctcactt
    14581 cctttttcag ttttatcttt ctagcagctg gtttgctact ctggttggag cctgatttta
    14641 ccagctacgg tgatagttta tggtacagct ttgtaacggc gacgactgtt ggctatggag
    14701 atatgctggt caccactgct tttggacgga ttatcagcat tatcttagct atttacggca
    14761 ttctcttttt ggggagcctg tctggattag tcgtcagcta ctataccgag gtcagcaagc
    14821 attattcttt agcaatcaaa caggacaagc aaaaaactgg ctcttaggaa ccagtttttt
    14881 aatagctttc caaaatctga tcaattttag ctattgcctc ttcaaaaata gcctgagact
    14941 gacttggatc ggcagattgc ccttcgataa agacctgatg aatgtcttca aagcctaaaa
    15001 attcaaagat agacttgatg tactgagctg caggatcttg acctgcataa acaccaccat
    15061 tggactggat gtgcaacaat tttttgccct tgaccagacc gatagagccc tcaggtccat
    15121 acttgaatgt cagtcctgca acgttaatgg tattgatcca tgacactaat tgacttggca
    15181 cattgaggtt ccaaagggga ttgaccacga caatcttatc tgctgcaaga aattgttggg
    15241 tcaaggcatt gtagcggccc aactgctctg cttgttcagg gctgatagct tcgcctcttt
    15301 tagctgctcc catagcctct aacaagggct tatccaaagc tggtatttgg tcctcaaaga
    15361 catctactat ttcaatccga tcttctgggt gcaaactggc gtaccgtgtt tgaaactctt
    15421 ccaaagcccg caaggcgtag gacttttgtg catcaagtgg gtgggctttt acgattaata
    15481 gatttgccat tggttctctc ctttgttatc ctttattact aattattgat aaatatattc
    15541 tactcttttt gatttgaaat tcaaatcatt tgctcgaagc aaaaggctgg tctcccagcc
    15601 tctgcttttt agattgtttt attattttaa ataggtgtaa gcgacacagt ccaggctatc
    15661 aacggctgta aagccaattg cctcatagaa agaccgtgtt ttctcagtat tgtccgtcaa
    15721 gagatgaagc tgataaatac ccggaaagtg ggtaacggcc tgctccaaaa gctgacgccc
    15781 aattccttgt cgctgatagg cggggaggac caaaatatcc tgaataaaca tgatagaata
    15841 accgtcacca actgctcgca agagacccac tagacggtca ccgtcaaagg ccgcaagaac
    15901 aaacaggcta tgtttcaaga ccttctgtaa catggtaagc cggtcagtat aatttgtcca
    15961 accaactgaa tcatagattc caaggactgc ttgaaaatca agttgaggat tttgtttgta
    16021 agtaatcatg atgttctcct ttgtattatt tttagaatac aaaggcttta tctattgtca
    16081 aaacgcccat ggtctttcct cctgttttgc tacttctagt ataacaaaaa ccactccaat
    16141 tatgaagcgg ctttaaaatg cagataagca tagtagatgc taagacttac aacagaaata
    16201 ccaaccaaaa tcattacaag gatagatagg gctggtgaac ctaatagact aactagcagc
    16261 aataacccac caataattga gaaatagcca acatactttc ttccttttcg ttctatttcg
    16321 ttggtcttgc tgtccaattc ctccttgggt aaataatttc ctatcaccat ataatagaca
    16381 gccagcagtc caatgactaa cctctgataa tccagttctc ctcccaagtt aaaccggagc
    16441 aaagcaactt gaatgatgag agccagcagc ggaaaaagcc atttgaccac tcgaatgact
    16501 ggtgttttcc ctatccctct cacatcataa agtacacaaa tgaataggtg aacacaaaag
    16561 aatgatagcg gtgtcaaaat catcatatac ttggccatag agccatttga ctcaccattt
    16621 acgccaaaat gtgtcaccat ggtgtttggc aatgctttat agtaacaaat catcaataca
    16681 gcaatcagta ggaatatact agaagttgct aataatgttt ttatgtcaat tttcttcatc
    16741 ttgttgccct ccaaaacttg caatccaaac caagacttct tcaaagaccg tatagtttag
    16801 acgataataa ataaaatttt tctgcttttc ctccaaaatt aatccagctt ttttcaacgt
    16861 ggataaatga tgagatactg ttgctcctgt taattgaaat tgttctacaa tttccccagc
    16921 agacttcggc cccgacttaa gaccatctag aatttgccta cgaataggag cagaaattgc
    16981 cttcaaggtt tcagacaatc ccataataag cctccttgtc catctattta gaaatatttc
    17041 taaatagaat tatactctgt ttttattgtt tgtcaagaac tatttcgatt attttctaaa
    17101 tagatttcaa aaaaaacaga ccactcttta tggtctgtca aatccggctt atctctcccc
    17161 tttattgcgg ataacaaagc ctgttttctt ttcacttgat gtgcgttggt gtggtttttt
    17221 gttgtcctga cggcggttgt cgcgtttaaa cttgtcatcg cgacggttgc ggtcattacg
    17281 atcaccacgg cgtcctccgc gatctcggtt gcggtctcca tcacgacgac caccgcgatc
    17341 acggtcgcga ccaccacgtc cacccttgcc cttggcttga ccaggtgcaa acttgaatgg
    17401 cagtggtttt tctcgcgcaa tttctacctc tggcagactt tctggatcct gaacagtcaa
    17461 ggtcaataca taaagcgcta actcttcagg ggtaaattca gccgctaact gaatagcatc
    17521 tttcttgaac ttatcaaaat tgctacggat ggtttcatcc gccatttcac gctcaatctt
    17581 cttcaaagca actttcttct tggcttcaaa ggcctcttca gctgtcgctg gcttgagccc
    17641 cttcatacgc ttcttggtca actcttcgat gatggccaag tagcccatct cgtttggcga
    17701 cacaaaggta atagactgac ctgattgacc cgcacgacct gtacgaccga tacggtgaac
    17761 ataactttct ggatcctgtg gaatatcgta gttatagaca tgcgttacac ctgaaatatc
    17821 caaaccacgg gccgcaacgt ccgtcgcaac aaggacatca atctggtcat ttttaaaatc
    17881 acggatgaca cggaggcgct tgttctggtc caaatctccg tggataccct ctgcacggaa
    17941 gccacgcagt ttcaaaccac gagtcaattc atcgacacgg cgtttggtac gaccaaagac
    18001 aatagacaat tctggctggt caacatccat aagacgagtc atggtgtcga atttttcatg
    18061 ttctttgaca cgaagataat attggtcaac attgacatta gtcaattcct ttgctgcaat
    18121 cttaacgtgc tcaggttctt tcatgaactt gacaccaata cgcttgattg gctctggcat
    18181 ggttgcagaa aacagaaggg tttgacggct ctctggtaca cgttcgatga tcgcttcaat
    18241 atcatccaag aagcccatgt tgagcatttc atctgcctcg tcaagaatga gagtttcaac
    18301 accgtcaagt ttgagggcct tgcgtttgat caagtccaag aggcgacctg gtgtaccaac
    18361 aacgatgtga gcacctgaac gaagggcctt gatttgcttt tcaatgcttg agccaccgta
    18421 aacagagcgg actttcacac ccttttcacg accaaatttg aaaagttctt cttgactctg
    18481 caccgccaac tcacgtgttg gggcgataat caaggcctga attgcttgat tgtttgtgtc
    18541 aattttgttg agggttggca aaccaaaggc tgcagttttc cctgtccccg tctgggcttg
    18601 accaatcaca tctttacctt caagagcaag cggaatggtc tgctcctgga ttggtgacgg
    18661 cgtttcaaaa ccagccttct caacggcaag caaaatatct tctgataatt gtaaatctgt
    18721 aaatttcaat gtattctctt ttctaaaagg cagtgcgaag ctaccttatc taactttttt
    18781 gtaacaagat atcagggtcg aaccactgat attggatttg caacttacca agtataacac
    18841 aatctaacaa taatagttaa tatttacctt taaaaagtca ataatacgtt ttcatgagga
    18901 gtccat
//
LOCUS       DASFRC010000025        18866 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.025, whole genome shotgun sequence.
ACCESSION   DASFRC010000025 DASFRC010000000
VERSION     DASFRC010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 18866)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18866)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18866
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.025"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(306..653)
                     /locus_tag="U1087_000622"
     CDS             complement(306..653)
                     /locus_tag="U1087_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755126.1"
                     /translation="MKRANSKLAALTLITTLAVTSVIGTTVHADVQEKADQAVSRGFK
                     PIDDESLRKALGNSNPQNYTIRAKLPENTNLKSQGISITGKVEIPSKSSENSSWFWNL
                     WTRFTTFVKGIFS"
     gene            complement(839..1219)
                     /locus_tag="U1087_000623"
     CDS             complement(839..1219)
                     /locus_tag="U1087_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755127.1"
                     /translation="MKRIVTKRSYKVGLCAMALALLMSTAGGVTAGAQDYHVESSGAL
                     KPIGNGTFMKMEYSAFPKDTPIENNGVTELRAINSQNADSANSSDSWFWNLWKKFRTV
                     FQKFIDSGVRRGFGVKNLFKNKWW"
     gene            complement(1651..1965)
                     /locus_tag="U1087_000624"
     CDS             complement(1651..1965)
                     /locus_tag="U1087_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755128.1"
                     /translation="MKQLVTKRSYKIGLSAMALVLLMTTAGGATAHASTGTYSVETRG
                     DAKVYRLLETPAGSFTQGGIVLEPVNNSTTKPSETKSWFDSFWSSVKTFWEAFCRGVG
                     WC"
     gene            complement(2383..2730)
                     /locus_tag="U1087_000625"
     CDS             complement(2383..2730)
                     /locus_tag="U1087_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755129.1"
                     /translation="MKHIVTKRNYKVGACAMALALLMTTAGGAVVNANTHQSFESSYG
                     FSGRGGDGGVLLKLKGPTESVNQGVGNVEPVNPPVTQMAPSEPKSWFGSFWGGVQRLW
                     RALCCGLGFCPSR"
     gene            complement(3205..3909)
                     /locus_tag="U1087_000626"
     CDS             complement(3205..3909)
                     /locus_tag="U1087_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HEM4755130.1"
                     /translation="MKIHVVNNQVEGATVALDILREKLNGDAKVLGLATGSSPLEFYR
                     LIRESDLDFSNVTSVNLDEYVGLGEESDQSYIHFMKENLFNDKPFKKSYLPNGLATDV
                     VAETERYNKILAEHPVDFQILGIGRNGHIGFNEPGAPFDGQTHLVELAPSTIEANTRF
                     FDNPEDVPKQAISMGIANIMAAKTIVLMAYGQEKADAIKATVEGAVTEDVPASVLQNH
                     DNVILILDQAAASKLV"
     gene            4257..5285
                     /gene="queA"
                     /locus_tag="U1087_000627"
     CDS             4257..5285
                     /gene="queA"
                     /locus_tag="U1087_000627"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HEM4755131.1"
                     /translation="MNTADFDFDLPEELIAQVPLEKRDSSKLLILDREKQSMVDSHFD
                     HIIDQLNPGDALVMNNTRVLPARLYGYKPETMGHVELLLLKNTQGNQWEVLAKPAKRL
                     KVGTTVAFGDGRLTATIVEELEHGGRIVEFSYEGIFLEVLESLGEMPLPPYIHEKLED
                     RERYQTVYAKENGSAAAPTAGLHFTQELLEKIEAKGVKLVYLTLHVGLGTFRPVSVDN
                     VDEHEMHSEFYNLSAEAAQTLNQVKDSGGRIVAVGTTSIRTLETIGNKFDGRLEADSG
                     WTNIFIKPGYTFRIVDAFSTNFHLPKSTLVMLVSAFAGREFTLDAYKHAVEERYRFFS
                     FGDAMFIQ"
     gene            5349..5822
                     /locus_tag="U1087_000628"
     CDS             5349..5822
                     /locus_tag="U1087_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine repressor"
                     /protein_id="HEM4755132.1"
                     /translation="MNKIESRHQLILSLIMEKKIHTQQELQELLEINGVSVTQSTLSR
                     DIKMLNLVKVNEDDSSHYVINPIAPTRWEKRLRLYMEDALVMLKPIQHQVVLKTLPGL
                     ANSFGSILDAMEIPQIVATVCGDDVCLIICEDVEGAQACFEHLKQFTPPFFFSKL"
     gene            complement(6112..10371)
                     /locus_tag="U1087_000629"
     CDS             complement(6112..10371)
                     /locus_tag="U1087_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="family 16 glycosylhydrolase"
                     /protein_id="HEM4755133.1"
                     /translation="MKKETSKFTKKVILGQLLICTSFLVWAGQTVAAEEVSQGEPVAI
                     NNETPPAIEAKPLVEATPSTETEPSTPEEKQEEPQVADKNVVEGKKPVTNSQHQMVSE
                     LSTVPSVSIKNPDAATDGSAYGSSDDANSNTKIIAGKETGESDNGYSKWDHVYVQYDF
                     EKEVPVHTVKIHRNTYDNAVSTFKDVKVELSTSVDFSPETTEVIFKQADVEETIANKG
                     QPQVIQLPAPINARYIRIWGRGHYIQNTNSSWKGYSNGVLFNEIEVLAQVEADAGTNE
                     EPQTELVNLAKLKKPYFYGKAPTNPEAINDGKFDENYTTQESIGDKAYLQYEFRNVYT
                     IEEIKVQLAPGEYRNFRIDLDDDYNDGNNYNTIYKNENFTIDKEQIITIKTPKNSKAR
                     YVRFRGTRVDDTPLRYSEIQIMGRGKSYDESAPEYVPPKSEYDTLVWSDEFNGDKIDE
                     SKWQIIDGMWNHAAIYNRKAVSIKKDGDKSYLSIRSTNHKDKKALVEAVGHDRYDDKE
                     LPDKVTWSSGRLESKDKYSFQFGRMAVRAKVNDSKGIWPAIWMLAQDETGHDEIDVLE
                     YLGQNPWDAWTTNHFGILAKNKKSDGSAYKNYEAWSQEFHVYEVEWTPDVIKWYIDGK
                     FVFQTDRGKDRDGMHTRPMFPILETQVGDGWVGDVDYKRNMTKQDSEYLVDWVRIYQK
                     ADQSKVHFDNLDDAKPNDYVIKPQQKLGHLVTVSNGKAAHENKNNFYYGGQPRYETSR
                     LYADGDGENALVYKIANPEALHLTTYYKTLEDYSVYNKEAGANEGKSVRKHLINAKDG
                     EIDFTVYSSVDGKSWNKENVTVVDNFVEATPAYARTTFDIRNIRKGTKFVKIVFPTVK
                     GISYKLEDGTEKGLQASDVQLAKVTFVATHPEAEPEKPIVDQEKLALSKVFSLDAGRK
                     YFSVNQIKEIIDLISSYGYTDMNLLLGNDGLRFLLDDMNLTVGDKVYDSEAVRKAIIN
                     GNKHYYDDPNGTTLSQSEMDDILAYAKEKNISIIPTINSPGHMDAIVEAMEELGIKSP
                     KFSYNGKTSARTVDLKNDQAVAFTKALIDKYASYFAGKSKIFNIGLDEYANDATNASG
                     WHILQTQGDYGKFIQYANDLAAIVKKHGLEPMAFNDGIYYNHDTSSGTFDKDIIASFW
                     TGGWGGYDVASSKFLHEKGHKILNTNDAWYYVIGREAEGLGWYNLDQGLRGTKSTRFD
                     QVPKSENTKVPIIGSMVAVWADDPSKPYSYDSIKKLLHSFTENNSDYFWAEYRDLREE
                     VGKIPTDLNSYTPESVATLKEVLNKIDWKLSRNNQAFVDGYLAEVKAAREALVPVTAK
                     GDSVKAEPLPEGKLPLITAKGKSVQAEPRPAFKGYLTSNYGPSVTPLSLVSKPSSEQS
                     RSQQAAYQKKELPNTGAVDGLGFSLLGMLGLAFASRRRKEE"
     gene            complement(10742..12082)
                     /locus_tag="U1087_000630"
     CDS             complement(10742..12082)
                     /locus_tag="U1087_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase"
                     /protein_id="HEM4755134.1"
                     /translation="MRTSFIQSSHQEACIQAIQELVAFPSVLQEHQADTPFGQAIQDV
                     LEHTLALTEKMGFKTYLDPAGYYGYAEIGQGEELLAILCHLDVVPAGDFSQWQTPPFE
                     AVVEGDYIIGRGVQDDKGPSMAALFAVKALLDAGVQFNKRIRFIFGTDEETLWRCMNR
                     YNQLEEVATMGFAPDSSFPLTYAEKGLLQAKLHGPGHPCLSIEAGTAYNVVPAKASYS
                     GHLLAGVIAELDQLGFDYETKDDQVTVLGISRHAKDAAEGVNAIVRLAKALEHFESHP
                     ALDFIVNAVGEDATGFKLFGDVTDEPSGTLSFNIAGLTISAKKSEIRLDIRIPVTADK
                     EALVSTLQAKAQSCGLTYEEYDYLASLYVPLDSQLVSTLMSVYQDKTGDLTSEPISSG
                     GATFAPTMPNCVAFGACFPDTEQTEHQENERMPLEDLYKTMDIYAEAVYRLAAE"
     gene            complement(12201..13703)
                     /locus_tag="U1087_000631"
     CDS             complement(12201..13703)
                     /locus_tag="U1087_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcC family protein"
                     /protein_id="HEM4755135.1"
                     /translation="MSEKVKKGFKLPSSYTILMLIIAFMAVMTWIIPAGQYQVDEAGR
                     LVAGTYEKVAQNPQGIYDVFMAPVRAMLGHGATEAAINVAFFIIMVGAFLGVVNETGA
                     LDVGIASIVKRFKGREKMLIYILMPLFALGGSTYGMGEETMAFFPLLVPVMMAVGFDS
                     ITGVAIILLGSQIGCLASTVNPFATVVASDAAGVSVADGMIWRLVFFVVILLMGVLFV
                     ANYAEKVKNDPTKSLVYKQREADMQHFNVTATQEVNAELSPAQKRVLWVFVLTFVLMI
                     CSFIPWEDLGVTIFTQFKDWLIGLPFIGQVIGSSTAALGTWYFPEGAMLFGIAGIVVG
                     LVYGMSEERLVKSFMFGAADIFSVALICAIARGIQVIMNDGMITATILHMGEEGLQGL
                     SSQVFIILTYLFYLPMSFLIPSSSGLAGASMGIMAPLGEFVNVPASLVITAFQAASGL
                     LNLVAPTSGIVMGALALGRVEIGTWYKFVGKLIVGIMIASIAILVIATFF"
     gene            complement(14046..14993)
                     /gene="arcC"
                     /locus_tag="U1087_000632"
     CDS             complement(14046..14993)
                     /gene="arcC"
                     /locus_tag="U1087_000632"
                     /EC_number="2.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003025409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HEM4755136.1"
                     /translation="MANRKIVVALGGNAILSSDPSAKAQKEALVQTAKHLVKLIKNGD
                     DLIITHGNGPQVGNLLLQNLAADSEKNPAFPLDSLVAMTEGSIGFWLQNALENELHKE
                     GIEKDVASVVTQVIVDKNDPAFENLTKPIGPFYTEEEAKAEAEKTGATFKEDAGRGWR
                     KVVASPKPVGIKEIGTIRTLLNAGEVVVAAGGGGIPVVQEADGTLTGVEAVIDKDFAS
                     QCLAELVDADLFIVLTGVDYVFVNYNKPDQEKLETVTVAELEEYIKQNQFAPGSMLPK
                     VEAAIAFVNNKPQSKAVITSLENLGALIESDSGTIIVKG"
     gene            complement(15111..16124)
                     /gene="argF"
                     /locus_tag="U1087_000633"
     CDS             complement(15111..16124)
                     /gene="argF"
                     /locus_tag="U1087_000633"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000195397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEM4755137.1"
                     /translation="MTNVFKGRHFLAEKDFTRAELEWLIDFSAHLKDLKKRNIPHRYL
                     EGKNIALLFEKTSTRTRAAFTVASIDLGAHPEYLGANDIQLGKKESTEDTAKVLGRMF
                     DGIEFRGFSQKMVEELAEFSGVPVWNGLTDAWHPTQMLADYLTVKENFGKLEGLTLVY
                     CGDGRNNVANSLLVTGAILGVNVHIFSPKELFPEEEVVALAEGFAKESGARVLITDNA
                     DEAVKGADVLYTDVWVSMGEEDKFAERVALLKPYQVNMELVKKAENENLIFLHCLPAF
                     HDTNTVYGKDVAEKFGVEEMEVTDEVFRSKYARHFDQAENRMHTIKAVMAATLGDPFV
                     PRV"
     gene            complement(16143..16583)
                     /locus_tag="U1087_000634"
     CDS             complement(16143..16583)
                     /locus_tag="U1087_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM4755138.1"
                     /translation="MPSIERTTIGSEEWQRAASIYVRYKVFVLERGIAKEDEFDQNDT
                     EGRVYANLFIGEEPVSTGRFLPVGPGQARLTRIATLPNFRGKGYGKMIISSLEAYARE
                     AGFHQLNIHSELTAKTFYESVGYQATSEVYQEDGEWCQTLTKFI"
     gene            complement(16583..17815)
                     /gene="arcA"
                     /locus_tag="U1087_000635"
     CDS             complement(16583..17815)
                     /gene="arcA"
                     /locus_tag="U1087_000635"
                     /EC_number="3.5.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012560827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase"
                     /protein_id="HEM4755139.1"
                     /translation="MMSNHPIHVFSEIGKLKKVMLHRPGKEIENLMPDYLERLLFDDI
                     PFLEDAQKEHDAFAQALRDEGVEVLYLEKLAAESLVTPEIREQFIDEYLEEANIRGRA
                     TKKAIRKLLMSIEDNQELVEKTMAGVQKAELPEIPSEEKGLTDLVESSYPFAIDPMPN
                     LYFTRDPFATIGNAVSLNHMYSETRNRETLYGKYIFTHHPEYGGKVPLVYNREATTRI
                     EGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFEQHVGFKKVLAFEFANNRKFMHLD
                     TVFTMVDYDKFTIHPEIEGDLRVFSVTYENDTLHIEEEHGDLAELLAANLGLEKVELI
                     RCGGGDMVAAGREQWNDGSNTLTIAPGVVVVYKRNTITNAILESKGLRLIKIGGSELV
                     RGRGGPRCMSMPFEREDI"
     gene            complement(18074..18769)
                     /locus_tag="U1087_000636"
     CDS             complement(18074..18769)
                     /locus_tag="U1087_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM4755140.1"
                     /translation="MISNEQYDYLRAHPTFERLTRDSFDQLAKHIRFRKIPKGQIFFY
                     AEDPRDYLFVLYKGYARIEQYDETDSFTYLDYIRQGGAFPFGDMFQDKPYHYTAIAIT
                     DLEYFIVPMVLFETLSKINPSQMAYICQKLSKVLRFQELRLRNAMRSKASDRVVQALA
                     LLYWDMCQRDQFATLPFEIHIQEISRLAATTRETVSHVLKQLKQDGKIAYSHKQLTYL
                     DIDYFLENLTETH"
BASE COUNT         5726 a         4069 c         3284 g         5787 t
ORIGIN      
        1 aagaatatac ctgttacaca aagactgtgt tttttatcga tgcaatataa aaagtttaga
       61 acaattacat cctaaacttt tcactcttta atttatctaa gaaaaattac aaccgagact
      121 caagaaatat ggaattcgtg tcaacatctc attcgcaaaa aatgtgaggc tattacataa
      181 tttcttgcac aatctctagt ttagatacct agatctctcc aatatttcat acgcttttca
      241 tttgaataaa agctcacatg aaccactctt ctctatccat atgaagtcaa cgaaaaatag
      301 aaatcttagc taaaaatacc tttgacaaaa gttgtaaaac gagtccaaag gttccaaaac
      361 catgaagagt tttcagaaga tttagatgga atttcaactt ttccggtaat acttattcct
      421 tgacttttga gattggtatt ttctggtagc ttagcacgta ttgtatagtt ctgtgggtta
      481 ctatttccaa gtgcttttct cagtgactcg tcatctattg gtttaaaacc gcgtgacact
      541 gcttggtcag ctttttcttg aacatcagca tgcaccgttg tcccaatcac agaggtaacc
      601 gcaagagttg taatgagtgt taaagctgct agttttgaat tagctcgttt catgaaatgt
      661 ctccttttgt aaaaatgaaa cctgcctcta cccaaaagag caatggcagg aatgctatat
      721 tgaggttata aatatatatg aaaaaatttt taagggtaat atagaaaaat taccaagatt
      781 tacatattaa aatctacaca ataactttac atatatttta ggtcaaataa attctagatt
      841 accaccattt atttttgaac aaatttttca caccgaaacc acgacgtact ccactgtcaa
      901 taaatttttg gaaaactgtt ctgaatttct tccataagtt ccaaaaccaa gaatcagatg
      961 aattagctga atcagcattc tgactattaa tagctctcaa ctcagtgacc ccattattct
     1021 caataggagt atccttagga aaagctgagt attccatttt cataaacgtt ccatttccaa
     1081 ttggcttaag agcacctgat gattcgacat gatagtcttg tgcaccagcc gttacgccac
     1141 ctgcagtgct catcaacaga gcaagagcca tagcacacag accaacttta taactacgtt
     1201 ttgttacaat acgtttcatt tttgaaatgt ctcctttata caatattcgc ccttttctag
     1261 acaatgtagt gccagtatag cacaaaaaaa taacgtaaat cccaacttta gagaaagatt
     1321 agataaaaaa ccattaaatt ccaaaaaata aaaatattaa tataaaaatc aggaaatagg
     1381 atacgctccg ttcaagagaa ccttgtctcg aataagcgaa gtaataaaaa agaatatccc
     1441 taaaaaattt aaaaccctct attttcacag agggcatact attttgagtt atattattaa
     1501 agttatgaat gtatagatga aaaagatttt taagagggta atattataga aaattaaaaa
     1561 tttaagaaag attaatgaag gtatgaagga tttgcaaatt taattgacta aatattacaa
     1621 gattataact caaaatagta aacattctac ttaacaccat ccaactccac gacagaatgc
     1681 ttcccagaat gtttttacac tactccaaaa agaatcaaac catgatttgg tttcagatgg
     1741 tttagttgta gaattattca caggttccaa aactatgccc ccctgtgtaa aagaccccgc
     1801 cggagtttcc aacagcctat acactttggc atcacctcga gtttcgacac tataggtacc
     1861 cgtacttgca tgtgcagtgg caccacctgc agtggtcatt agcaagacca aagccatagc
     1921 actcaaacca attttataac tacgttttgt tacaagttgt ttcattgttg aaatatctcc
     1981 tttatacgat attcgtctct acaaatgata gtatagcaca aacagacaac tcaaattcca
     2041 actttagaaa aaggttagat aaaaaactat aaaactccaa gatatagaaa tattaatata
     2101 aagacaaaaa atacacatgc aatgtttgtg gttcaaaaaa acttgtatcg aataattgtg
     2161 gtaataaaga aaaaatgttt aaaaccctct attttcatag agggcatact aattcgagtt
     2221 atattattga agttatgaat gtatagatga aaaagatttc taagagggta atatatagaa
     2281 aattaaataa tttaagaaag ttagtgaagt atgaaggatt tacaaattta attgactaaa
     2341 tattacaaga ttataaaatc actataaaaa atcatgcaca ccttaacgtg atggacaaaa
     2401 gcctaatcca caacaaagtg ccctccacaa tctttgtaca ccaccccaaa atgaaccaaa
     2461 ccatgatttt ggttcagaag gagccatttg agtcacaggt gggttgacag gctcaacatt
     2521 tccaacccct tgattgacag attcagtcgg ccccttcagt tttaggagaa caccaccatc
     2581 tcctcctcta ccagaaaaac catatgacga ttcaaaagac tgatgagtat ttgcatttac
     2641 aactgcacca cctgcagtag tcatcaacaa tgcaagtgcc atagcgcatg cgccaacttt
     2701 ataattacgt tttgttacaa tatgtttcat gatgaaacat ctcctttgta tggatatttg
     2761 cttcctccta tcggaaacgt agtaacagta tagcacaaaa aaataactca aaaaccaact
     2821 ttagaaaaag attatataaa aaccagaaaa ctacctgaaa aaaatgaaaa cgttatacaa
     2881 aacgtagaga aaatgatact atttcgccca tttcacttat ccctatcaat tttcaacatg
     2941 ataaaggata gcaatttagt aatacctctt gttgaaattt tctctcacat ccaacttaat
     3001 gttatatata atccattcaa atatataaca actgatatgg attatcagaa tagcaaaagg
     3061 catgccctta aaaatataag ttacatgcct tttcacaatt tttgtcaaat tcataatgga
     3121 aaaagaacct agattcattc agaaattata cttattgtac tgttacaacc aactttatgt
     3181 ctaagaataa tcgtttacaa catactacac taatttactc gctgctgctt ggtcgaggat
     3241 gaggatgaca ttgtcatggt tttggaggac gcttgctggg acatcttctg tcactgcccc
     3301 ttccacagtc gccttaatgg cgtcagcttt ttcctgacca taggccatga gaacaatggt
     3361 cttggctgcc ataatgttgg cgatgcccat ggagatagct tgttttggta catcttctgg
     3421 attgtcaaag aagcgggtgt tggcttcaat ggttgatggc gccaattcaa ccagatgagt
     3481 ctgaccatca aatggagcac ctggttcgtt gaaaccgata tggccgttgc gaccgatacc
     3541 caaaatttgg aaatcaaccg gatgttcagc caaaatttta ttgtaacgtt ctgtttcagc
     3601 aactacatct gtcgccaaac cattcggtaa ataagatttc ttaaacggtt tgtcattgaa
     3661 aagattttcc ttcataaaat gaatatagga ttggtcgctc tcctcaccta gaccaacata
     3721 ctcatccaag tttacagatg tcacattcga aaagtctaaa tctgactcac gaatcaatct
     3781 gtaaaattct aacggactgg agcctgttgc caaacctaat accttggcat ctccgttcaa
     3841 tttttctctc aaaatgtcta atgctacagt tgctccttca acttgattgt ttactacatg
     3901 aattttcata acacccctct ttggtctata ccatttattg tttttcttta ttatatggta
     3961 tagaccaatt tttgtcaaga atttatacct atagagtatt acatcagcac gaataatttt
     4021 aattctcttc ccatccatca agacttaagt gtctaactat gatataatac atttatgaca
     4081 gatgtgcttt tttacttatt ttttattggt attctgttct gccttactgg ctattttatt
     4141 tctaaatcaa aggtcctaaa gtttattttc tacctgattg gtagtctatt ggtggctttg
     4201 ccatttgccc tattgattta ttttacctat attttatttt agtctaagga gtgaatatga
     4261 atactgcaga ttttgatttt gatttacccg aagagcttat cgctcaagtt ccccttgaaa
     4321 agcgcgacag ctctaaacta ttgatcctcg accgcgaaaa acagagcatg gttgacagtc
     4381 actttgacca tatcatcgac cagttgaatc ccggtgatgc cctggtcatg aacaatacac
     4441 gtgttctgcc tgcccgtctc tatggctaca agcctgaaac tatgggacat gttgagcttt
     4501 tgcttttgaa aaatacccaa ggtaatcagt gggaagttct tgccaaacca gcaaaacgtc
     4561 tgaaggtcgg taccacagtc gcttttggtg acggacgatt aactgctact atcgtagaag
     4621 aattagaaca cggtggtaga attgttgaat tctcctatga aggtatcttc cttgaagtct
     4681 tggaaagtct aggcgaaatg ccacttccac cttacattca tgagaaatta gaagaccgcg
     4741 aacgctatca aacagtttat gccaaggaaa acggttctgc cgcagctcca actgctggac
     4801 tacatttcac ccaagagtta ctcgaaaaaa tcgaagctaa aggagtgaaa ctagtctatc
     4861 tgactcttca cgttgggctt gggaccttcc gaccagtctc tgttgataac gttgatgagc
     4921 atgaaatgca ctcggaattc tataacctat cagcagaagc tgctcaaacc ctcaatcagg
     4981 tcaaagatag cggtggtcgt atcgtcgcag tcggcacgac atccatccgc accctcgaaa
     5041 ccatcggtaa taaatttgat ggccgtttgg aagctgattc tggttggaca aatatcttca
     5101 tcaaacctgg ctacaccttc cgaatcgttg atgccttctc aaccaatttc cacctaccaa
     5161 aatctacttt ggttatgcta gtttctgcct ttgcaggtag agaatttacg ttagatgcct
     5221 ataaacatgc tgttgaagaa cgctaccgct tctttagttt tggggatgca atgttcattc
     5281 aataggctgt tatcaccaaa ttattctgag ttcagatttt attttcctta catctcaagg
     5341 agggccctat gaacaagatt gaaagccgcc atcagctgat cctgtctcta atcatggaga
     5401 agaaaataca tacccaacag gaattgcaag aattactaga gatcaacgga gtctccgtca
     5461 cccaatctac cctctcccgt gacatcaaga tgctcaatct tgtcaaagtc aatgaagatg
     5521 attcttctca ctatgtcatc aaccccattg ctcctactcg ctgggaaaaa cgactgcgac
     5581 tctatatgga agatgctctg gtcatgctaa aacctatcca acatcaagtg gtgctcaaga
     5641 ccctacctgg attggccaac tcattcggtt ctattttgga tgccatggag attcctcaaa
     5701 ttgtagcgac tgtctgcggt gacgatgtct gtctcatcat ttgtgaagat gtcgaggggg
     5761 cacaagcttg cttcgagcac ttgaaacagt ttactccacc atttttcttt agtaaattat
     5821 aaaaatttgt gttcacaaac aaatacttaa ttttaaagat aatttttcaa ataaatatca
     5881 acaacttccc tttatactca taaacgaaaa tctcccgtaa taagatttat tacgggggat
     5941 ttttagtagc ctataaaaaa ttatcctatt attcatagcc ttctagttta ctttttgtac
     6001 aaggcaatga gctacatgct atacttgggt acagcaaagc gagtgaaaga aaaactagat
     6061 aactatataa ttacaattag aaagccctga accttaattc aagtggctac attactcctc
     6121 cttccgccgg cgactagcaa atgccagacc aagcatacca aggagagaga atccaagacc
     6181 atctactgcg cctgtatttg gcaattcttt cttctgataa gctgcttgct gggagcgtga
     6241 ctgctcacta cttggttttg atacgagaga taaaggtgtg acagatggtc catagtttga
     6301 ggttaggtat cccttaaagg cagggcgtgg ttctgcttgg acactttttc ctttagcagt
     6361 aatcagaggt agcttgcctt ctggtaaggg ctccgctttg acgctgtctc cttttgctgt
     6421 cacaggaact aacgcttcac gcgctgcttt tacttctgcc aagtaaccat caacaaacgc
     6481 ttggttattt ctacttagtt tccaatcaat cttgttcaag acctctttta aagtcgccac
     6541 gctctctggt gtataggaat ttaaatcagt aggaatcttc ccaacttctt ctcgcaaatc
     6601 tcggtactct gcccaaaaat aatcagaatt gttttccgta aaactgtgca aaagtttttt
     6661 aattgagtca tagctgtaag gcttgcttgg gtcatctgcc cataccgcaa ccatgctacc
     6721 gataatgggt accttagtat tctcagattt cggtacttga tcaaaccttg ttgatttagt
     6781 tcctcgaaga ccttgatcaa ggttatacca tcccaaacct tctgcttcac gtccaataac
     6841 atagtaccaa gcatcatttg tattaagaat tttatgccct ttttcatgaa ggaattttga
     6901 ggaagcaaca tcatatcctc cccaacctcc tgtccagaaa gaagcaataa tgtctttatc
     6961 aaaagtaccc gaactagtat cgtggttata atagatacca tcattgaaag ccattggctc
     7021 taaaccatgc ttcttgacga tagctgctaa atcattggca tattgaataa acttaccata
     7081 atcaccttgt gtctgaagaa tgtgccatcc agaagcattt gtagcatcgt tagcatactc
     7141 atctaagcca atattgaaaa ttttagattt gcctgcaaag taactagcat atttatcaat
     7201 taaggcttta gtaaaagcaa ctgcttggtc attttttaaa tcaactgtac gtgcagatgt
     7261 tttgccatta taactaaatt ttggcgattt tatccccaat tcttccattg cttctacaat
     7321 cgcatccata tgacctgggc tattgatagt tggaataatg gaaatatttt tttccttagc
     7381 ataagcaaga atatcatcca tctcactctg acttaaggtt gtaccgtttg gatcgtcata
     7441 ataatgctta ttaccattta ttattgcttt tctaactgct tcactgtcat acaccttatc
     7501 tccaacggtc aaattcatat catctaataa aaatctcaga ccatcatttc ccaataagag
     7561 gttcatatcc gtgtaaccat aagaagaaat taaatcaata atctccttta tctgatttac
     7621 agagaaatac ttgcgaccgg catcgagtga aaaaactttg gacaaggcta gtttttcttg
     7681 atcaacaata ggtttttctg gttctgcttc aggatgagta gctacaaaag ttacttttgc
     7741 taactggaca tcactggctt gcaggccttt ctctgttcca tcttccaact tataggaaat
     7801 acctttaacc gttggaaaga cgatcttcac aaatttagta ccttttcgaa tgttgcgaat
     7861 atcaaatgta gtgcgtgcat aagctggggt tgcttctaca aaattatcca ctacagtaac
     7921 attctcttta ttccagcttt tgccgtcaac agatgagtac acagtgaagt caatttcacc
     7981 gtcttttgca tttatcaaat gtttgcgaac agattttcct tcattagccc ctgcttcttt
     8041 attatagaca gaatagtctt caagtgtttt gtaataagtt gttaagtgca aagcctctgg
     8101 attagcaatc ttgtaaacta gtgcattttc gccatcacca tcagcataga gcctgcttgt
     8161 ttcgtaacgt ggttgacctc catagtagaa attatttttg ttttcatgag ctgctttccc
     8221 gttagagact gttacgaggt gaccaagttt ttgctgcggc ttaataacat aatcattagg
     8281 cttggcatca tctagattat caaaatgtac cttactttga tctgcttttt gataaattcg
     8341 aacccaatca accaagtact cactatcctg tttagtcatg ttgcgtttgt aatcaacatc
     8401 accaacccag ccatcaccaa cttgggtttc cagtatcggg aacatagggc gggtgtgcat
     8461 accatcccga tccttaccac ggtctgtttg aaaaacaaat tttccatcaa tataccattt
     8521 gatgacatct ggagtccatt cgacttcgta gacatggaat tcctgactcc aagcttcgta
     8581 attcttataa gctgagccat cagatttttt attttttgcc aaaataccaa aatggttagt
     8641 tgtccatgca tcccatggat tttgaccaag gtattccaaa acgtcaattt cgtcatgccc
     8701 ggtctcatcc tgtgccaaca tccaaatagc aggccagatt cccttagagt catttacctt
     8761 agctcgaaca gccattcgac caaattggaa agaatactta tctttagatt ctaggcgacc
     8821 agaagaccat gttactttat ctggtaattc tttatcatca taccgatcgt gcccaactgc
     8881 ttcaaccaaa gcttttttat ccttatggtt cgtgctacgg atagacaaat agctcttgtc
     8941 gccatctttt ttgatagaaa ctgctttacg attgtatata gccgcatgat tccacatgcc
     9001 atcaataatt tgccatttac tttcatcaat cttgtcgcca ttaaattcat cagaccagac
     9061 taatgtatcg tattcagatt ttggtggaac atattctgga gcagattcgt cataagattt
     9121 tcctcgtccc ataatctgaa tttctgaata gcgaagagga gtatcatcta cgcgcgtacc
     9181 tctaaagcga acataacgcg ccttagaatt ttttggagtt ttaatcgtta tgatctgttc
     9241 cttgtcaatg gtgaaatttt cattcttata gattgtatta taattattac catcattata
     9301 atcatcatcc aaatctatcc ggaaattacg atactctcca ggagctaact gaaccttgat
     9361 ttcctcaata gtatagacat ttctaaattc gtattgaaga taagctttat cccctattga
     9421 ttcttgagta gtataattct cgtcgaactt tccatcgtta atggcttctg gattagttgg
     9481 agccttacca tagaaatatg gttttttcaa tttagcgagg ttgactagct cggtttgtgg
     9541 ttcttcattc gtaccagcat ctgcttcaac ctgcgccaag acttctatct cgttaaagag
     9601 aacgccatta ctatatccct tccatgaact gtttgtattt tggatataat gcccccgtcc
     9661 ccaaatacga atataacgag cattgattgg tgctggtaat tggatgactt gaggttgtcc
     9721 tttatttgca attgtttctt ctacatctgc ctgtttgaaa atgacttctg tggtttcagg
     9781 agaaaaatct acacttgtag acaattccac tttaacatct ttaaaagtag agactgcatt
     9841 atcataagta ttacgatgaa tttttacagt atggacggga acttcctttt caaaatcata
     9901 ctgaacgtaa acatgatccc acttggagta accgttatct gattcgccag tttctttacc
     9961 agcaatgatt ttggtattgc tattggcatc gtcgctacta ccgtaagcac tcccatcggt
    10021 agctgcatct ggatttttta tagaaacaga agggaccgtt gataattccg aaaccatctg
    10081 atgctggctg ttagttacgg gctttttccc ttctaccaca tttttatcag ctacttgtgg
    10141 ttcctcctgt ttttcttctg gagttgaagg ttctgtttca gttgatggag tagcttccac
    10201 aagtggtttt gcttcaatag caggtggagt ttcattgttg attgctactg gttccccctg
    10261 agatacttcc tctgctgcaa cggtctgccc tgcccatacc aaaaaactgg tacagatgag
    10321 aagctgacca aggatgactt ttttcgtaaa cttacttgtt tcttttttca ttatttcctc
    10381 ctataaagtc tgcaagttta tcctacctat agccaaaata aagcagtttt taaacctatt
    10441 tagtctcgta taagactcaa aattcagttt actggttgat gtgcgatcgc atttctgaca
    10501 caaatataac atgtaagcgt tttattgtag aatagtctaa cttgacttat tctatatgca
    10561 gatgggttct atttctaaaa cagcatataa taagtcacac tttcatatat ttttgtatac
    10621 ttatcgtaaa tagtgacaca tttctatctc atctttctaa tgatattctt cataagaaaa
    10681 gcccttagat atttcactaa gagctttgaa actgtaattt actattcaat actgataatg
    10741 gctattccgc agctaggcga tagactgcct cagcataaat atccattgtt ttatataagt
    10801 cttccaatgg catgcgttca ttttcctgat gctctgtttg ttctgtatct gggaaacatg
    10861 caccaaaggc cacacagttt ggcatagtag gagcaaaggt agccccacct gacgagattg
    10921 gctcgcttgt taaatctcct gtcttatctt gataaacaga catgagcgta gataccagct
    10981 ggctgtctaa tggcacatac aaggaagcaa ggtagtcgta ctcttcatag gtcaagccac
    11041 atgattgcgc tttggcttgt aaagtagaaa ctagggcttc tttatccgca gtgacaggaa
    11101 tacgaatgtc caagcgaatt tctgattttt ttgcgctaat ggttagacct gcaatattga
    11161 aactgagtgt ccctgatggt tcatcggtca catcaccaaa aagcttaaat cctgtggcat
    11221 cttcaccaac tgcattgacg ataaagtcca aggctggatg actttcgaaa tgttccaaag
    11281 cctttgccaa acgaacgatg gcattgaccc cctcggcagc atccttggcg tgccgcgaaa
    11341 taccaagaac cgttacttga tcatctttgg tttcataatc aaagcctaat tgatctaatt
    11401 ccgcaataac tccggctaat aaatgaccag aatagcttgc cttggcaggt actacgttat
    11461 aggcagttcc cgcttcgata ctcagacaag ggtgacctgg accatgcaat ttggcctgta
    11521 gcaatccttt ttcagcataa gtcaaaggga aggaagaatc tggtgcaaag cccatagttg
    11581 ctacttcttc caactgattg tagcggttca tacaccgcca taaggtctct tcatctgttc
    11641 caaaaatgaa acgaatccgt ttgttaaatt ggactcccgc atcaagaagt gcttttactg
    11701 caaataaggc cgccatcgaa ggacctttat catcctgaac cccgcgtcca ataatataat
    11761 ctccctctac cacagcctca aaaggcggcg tctgccattg actaaaatca ccagcaggta
    11821 ccacatctaa gtggcaaagg atagctaata attcttcgcc ttgcccaatt tcagcatagc
    11881 cgtaataacc agcagggtct aaataagttt taaaacccat tttttccgtc aaagccaacg
    11941 tgtgctccag aacatcctga atcgcttgac caaatggcgt atctgcctga tgttcttgca
    12001 aaacagaagg aaaagcaacc agttcttgga tggcttgaat acatgcctcc tgatgcgatg
    12061 actgaataaa acttgttctc attgtgtccc ctttcaacat aataagatat gatatatttt
    12121 ctagcactat tctatcataa aaggaaaaac tgagccaaat tttatctgta ttcgtgataa
    12181 aatctgaccc agaatttcga ttagaagaat gtcgcaatga ccaaaatagc tatggaggca
    12241 atcatgatgc ctacgattaa cttacctaca aatttatacc aagtaccaat ttcaacacga
    12301 ccaagtgcca aggctcccat tacaatacct gatgttggag ccaccaagtt caagagacct
    12361 gatgcagctt ggaaagctgt gataaccaag cttgctggta catttacaaa ctcaccaaga
    12421 ggtgccatga tacccataga agcccctgca agacctgatg aagatggaat caagaaggac
    12481 attggtaggt agaagagata ggtcaaaatg atgaatactt gtgaagataa accttgcaat
    12541 ccttcttcac ccatgtggag aatagtggca gtaatcatac catcgttcat gatgacttga
    12601 ataccacgcg cgatagcaca aatcaaagct acgctgaaaa tatcagccgc accgaacatg
    12661 aaggatttta ccaaacgttc ttcactcata ccataaacta aaccaactac aatccctgcg
    12721 ataccaaaga gcattgctcc ttctgggaag taccaagtac caagagcagc tgttgaagaa
    12781 ccaatcactt gaccgatgaa cggaagacca atcaaccaat ctttaaattg tgtaaagata
    12841 gtaacaccca aatcttccca tggaataaag ctacaaatca tgagaacaaa tgttaataca
    12901 aatacccaga gaacacgttt ttgagctggt gataattctg cattcacttc ttgagttgct
    12961 gttacattaa agtgttgcat gtccgcttca cgttgtttat aaaccaagga cttagtcgga
    13021 tcgtttttca ctttctcagc atagttggct acaaagagaa cccccatcaa gagaataaca
    13081 acgaagaaga ccaagcgcca aatcataccg tccgcaacac ttacacctgc tgcatcagag
    13141 gctacaaccg ttgcaaatgg gtttacagta gaagccaaac agccgatttg agaacctagc
    13201 aagatgatgg ctacaccagt aatactatca aaaccaaccg ccatcataac aggaacaagg
    13261 agcgggaaga aagccattgt ttcttcaccc ataccatagg ttgagcctcc taaggcaaac
    13321 aaaggcatga ggatgtaaat caacattttt tcacgacctt tgaagcgttt tacaatagaa
    13381 gcaatcccta catcaagtgc acctgtttcg ttaactacac caagaaaggc gccaaccatg
    13441 atgatgaaga atgctacgtt aatcgctgct tcagtcgcac cgtgaccaag catggcacga
    13501 actggagcca taaaaacatc gtaaatccct tgtggatttt gagcaacctt ctcataggta
    13561 ccagccacca aacgtccggc ttcatccacc tgatattgac cagctggaat aatccatgtc
    13621 atcactgcca taaaggcaat aatgagcatc aatattgtat aagacgaagg caatttaaag
    13681 ccttttttca ctttttcgct catcgcaaaa acctcctata atattttaaa agtttatccc
    13741 ctatttaagg gaaattgtat ccgtaataac cgtatcaaat acccacctat cttcaagaga
    13801 tgtctatctc cttcagtcta ttatctgaaa tcattgctta tagatagata cttgatagga
    13861 aatggatgag aggggaggga gcttagaagc ccagaccttc atgtttagat taaagggaac
    13921 ccttgtggga ctatcaacac tttcactccc ctaactccat caataaataa cccgtctagt
    13981 ttaaaaacta tatttgcatg cagagtacat caataaatag aagcctcaac gatacataca
    14041 gctgcttagc ctttgacaat gatagtgccg ctatcggatt caatcaaagc acctaagttt
    14101 tctaatgagg taatgactgc ttttgattgc ggcttattgt ttacaaaagc aatagctgct
    14161 tcaactttcg gtagcatgga acctggtgcg aattgatttt gtttgatata ttcttccaat
    14221 tcagccacag taacggtttc taatttttct tggtctggtt tgttgtagtt aacaaagaca
    14281 tagtccacac ctgtcaagac gataaacaag tctgcatcaa ccaattctgc caaacattga
    14341 gaagcaaagt ccttatcgat aactgcttcc acaccggtaa gagtaccgtc tgcttcttgg
    14401 acaactggaa tacctccgcc tccagcagct acgactacct cacctgcatt gagaagggta
    14461 cgaatggtac caatttcttt gattcctaca ggttttggcg aagcaacgac tttgcgccag
    14521 ccacgaccgg catcttcttt gaaggttgca ccagtctttt ctgcttctgc tttcgcttct
    14581 tcttctgtat agaatggtcc aatcggcttg gtcaaatttt cgaaggcagg atcattctta
    14641 tccacgataa cctgggtcac aacagatgct acatcttttt caatgccttc tttgtgcaat
    14701 tcattttcca aggcattttg caaccagaaa ccgatcgaac cttctgtcat ggctaccaaa
    14761 ctgtctagtg gaaaagctgg gttcttttcc gaatcagcag caaggttttg aagaagtaag
    14821 tttccaacct gaggaccatt accatgcgtg ataataaggt cgtccccatt ttttatcaat
    14881 tttacaaggt gcttggctgt ttgtaccaag gcctcttttt gtgctttagc cgatgggtcg
    14941 gacgataaaa tggcattgcc acccaaggct actacaattt tacgatttgc catatctctt
    15001 gctttttcct cactttcgcg aaatagtaat cgcttacaca tctatcctca aaatatgggg
    15061 gctgggtgcc agcccccgga ggttgcgatg cgttattaga tagttaatta ttacacacgt
    15121 ggaacaaatg gatcccctaa agtagccgcc atcactgctt taatagtgtg catacggttt
    15181 tcagcttggt cgaagtgacg agcatatttg ctacggaata cttcgtctgt tacttccatt
    15241 tcttctacgc cgaatttttc agcgacatct ttaccataaa cagtgtttgt atcatggaag
    15301 gcaggcaagc agtgcaagaa gatgagattt tcattttctg cttttttcac caattccata
    15361 ttcacttggt atggtttcaa gagggcaacg cgttctgcaa atttatcttc ttcacccatt
    15421 gatacccaaa cgtcagtata aagaacatct gcacctttga ctgcttcgtc agcattatca
    15481 gtaatgagaa cacgtgctcc actttctttc gcaaaacctt cagccaaggc aactacttct
    15541 tcttctggga agagttcttt tggagagaag atatggacat tgacacctag gatagcgccc
    15601 gttaccaaaa gtgagttagc aacgttgtta cggccatcac cacagtaaac cagagtcaaa
    15661 ccttccaact tgccaaagtt ttctttgaca gtcaagtagt ccgccaacat ttgagttggg
    15721 tgccatgcgt ctgtcaaccc attccatact ggcacaccag agaattctgc caattcttcc
    15781 accatttttt ggctgaaacc acggaattca ataccgtcga acatgcgtcc caaaacttta
    15841 gcagtatctt ctgtagattc tttcttacca agttggatgt catttgcacc aagatattct
    15901 ggatgcgctc caaggtcaat ggaggctact gtgaaggcag cacgagtacg tgttgatgtt
    15961 ttttcaaaca agagagcaat atttttacct tccaaataac ggtgtggaat attgcgtttt
    16021 ttcaaatctt tcaaatgagc tgagaaatca atcaaccatt ccaattctgc gcgtgtgaaa
    16081 tctttctctg caaggaaatg tctaccttta aatacgtttg tcattgtctc ttctcctaat
    16141 gtttaaataa attttgtcaa tgtctggcac cattctccat cttcttgata aacttcagaa
    16201 gttgcttggt agccaactga ctcataaaaa gtctttgcag ttaactccga atgtatattc
    16261 aactgatgaa agcctgcttc acgtgcataa gcttccaaag agctgataat catttttcca
    16321 tagccttttc cacgaaaatt cggtagagtg gctattcggg ttagacgagc ttgaccagga
    16381 ccgacaggaa gaaaacgtcc cgttgaaaca ggctcttcac caataaagag attggcgtaa
    16441 actcttcctt ccgtatcatt ctggtcaaat tcatcttcct ttgcaatacc acgctcaagg
    16501 acaaatacct tatagcggac atagatagag gctgcgcgtt gccattcttc cgaaccgatt
    16561 gttgttcgtt ctatactcgg cattagatgt cttcccgttc gaacggcatt gacatacaac
    16621 gaggtccacc acgaccacga accaattcgc ttccgccaat cttaatcaaa cgaagccctt
    16681 tggactcgag gatagcattg gtaatcgtat tgcgtttgta aacaactacc acacctggtg
    16741 caatagtcaa tgtatttgaa ccatcattcc attgctcacg accagcagca accatatcac
    16801 cgccaccaca acggatcaat tctacttttt caagaccaag gttcgcagcc aaaagttctg
    16861 ccaagtcacc atgttcttct tcaatatgaa gtgtatcatt ttcataggtt acagagaaga
    16921 cacgaaggtc accttcaatt tctgggtgga tagtaaactt atcatagtca accatggtaa
    16981 atactgtatc caagtgcatg aatttacggt tgttagcaaa ttcgaatgcc aatactttct
    17041 tgaagccaac atgctgttca aagatattta ccaatagttt ttcaattgat gcagcatcgg
    17101 tacgttgtga aatacctact gccaaaacat cttttgaaag aaccaattcg tcaccaccct
    17161 ctatacgagt agttgcttca cgattgtaaa ccaatggaac ttttccacca tattctgggt
    17221 gatgggtgaa gatatattta ccatacaagg tttcacggtt ccgtgtttct gaatacatgt
    17281 ggttaagaga aacagcatta ccaatcgtag caaatggatc ccgtgtgaag taaaggtttg
    17341 gcattgggtc tattgcaaat gggtaagagg attcaaccaa atctgtcaaa cctttttctt
    17401 cagaagggat ttctggcaat tctgcctttt gaacaccagc catcgttttc tcaaccagtt
    17461 cttgattatc ttcaatagac atcaacaact tgcgaattgc cttcttagtc gcccgaccac
    17521 gaatgttagc ttcttcgaga tattcatcaa taaattgttc acgaatttca ggcgtaacaa
    17581 gtgactcagc agctaatttt tccaagtaga gcacttcgac accttcatca cgaagagctt
    17641 gagcaaaagc atcatgctct ttctgtgcat cttctaagaa tggaatatca tcgaagagta
    17701 ggcgttctag gtagtcaggc atcaggtttt caatttcctt acctggtctg tgtaacataa
    17761 cttttttcag cttaccaatt tctgaaaaaa catgaattgg atggtttgac atgatctgtc
    17821 ctccttgtag atttatacat gatgggaaac gaggaggacc gtacgctttc ctgcctctca
    17881 tttcctcttt acatccatag tttaacagag caaaaaaaca aaaacttgaa aacgctcaca
    17941 tttattttga gaaattcttc acatttttaa ccttatttat aaataattat tgattatatc
    18001 gcctatattc tgcataattc tctccgttat atcattatat gaatttttat ttttttataa
    18061 aaaaacagaa acttcaatga gtttctgtca aattttctaa gaaataatca atatctaaat
    18121 aagttaactg tttatggcta taagcaattt taccatcctg cttcagttgc ttcaaaacat
    18181 ggctaaccgt ttcccgtgtc gtagctgcta aacgcgaaat ctcttgaata tgaatttcaa
    18241 atggcaaggt agcaaactga tcgcgctggc acatatccca ataaagaaga gccaaggctt
    18301 gaacgactcg atctgatgcc ttggaacgca tcgcatttcg caagcgcaac tcttgaaaac
    18361 gaagcacttt ggataatttt tgacagatat aagccatttg actcggattt atcttcgaca
    18421 aggtttcaaa caagaccatc ggtacaataa aatactctag gtccgttatg gcaatggcag
    18481 tataatgata aggtttgtcc tgaaacatat ctccaaaagg aaaggcaccg ccctgccgaa
    18541 tatagtccaa atacgtaaaa ctatccgtct catcatattg ctcaatccga gcatagccct
    18601 tatacaatac aaatagataa tctctaggat cctctgcgta aaaaaagatt tgccccttag
    18661 gaatctttcg aaaacgaata tgcttagcta attgatcaaa gctatcacgt gtcaaacgtt
    18721 caaaagttgg atgtgccctt agataatcat attgttcgtt gcttatcatc aaaactcctt
    18781 tctagctaaa gtatccttct atctatttta acatatatta acgttctatg ctaatcatta
    18841 ctgaaaaatt cataaaacag tgagga
//
LOCUS       DASFRC010000026        18604 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.026, whole genome shotgun sequence.
ACCESSION   DASFRC010000026 DASFRC010000000
VERSION     DASFRC010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 18604)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18604)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18604
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.026"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..3131)
                     /locus_tag="U1087_000637"
     CDS             complement(<1..3131)
                     /locus_tag="U1087_000637"
                     /inference="COORDINATES: protein motif:HMM:NF019202.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1542 domain-containing protein"
                     /protein_id="HEM4755141.1"
                     /translation="MNRSKKKSFDWYGARQRFSIRKYHIGAASVLLGTTLVLGAGTIV
                     GAETGVNGGGTSDGTTSTTQQQSDNQGNNSSGVQTGNTTNSTANVQPAGDTGSASSQP
                     VGTSRSANTGTQGDGTTNPTVDEPIIKFPTSESDPVPNGYVLVSFQKPEYGSYVFNNL
                     PGEFPNATKQSINSRPIQLEVRFWVKEGTTWGQLIEDPNWRWPTMKPNDGDVFIDWNI
                     GYGYSNRFDFNKKKDQPVTTTYFFPVVGYEVEEVEPLNANVNAFLAWYSPEGKSKWLI
                     VTFDAGKGSMTYKNKQYTSRSVAAYFQGIGYDNRQFTSKVVSPTLANHTFVRWQTRDG
                     VVLPKSGTITTETTYEALYLAHPQNQVAVFDSTKLTDSEKEQVKQKIYDANPDLSTGV
                     PQVIKAIEISDTGEATVTFNDDTAVKVPSATLTNEDKATAKSNAKAEIEKDAMEKSAA
                     INASTLTNEEKAAKLADVQDAKDRADIAIDKATTTEDLTKAISDGTAAIEAVSTTSTI
                     KTKAKEALEEAYNTEKAEIENSVLTADEKAIKQADLSKAKENAIKAVDDATTDSAVEG
                     ALNNGKATIESTYTAIIKIPSSASEPAPQGYVTVTFAGHKYTRGFTLGTQTGSSVKVF
                     VKNGVTWGTLLDDPAWQWPTVKTDEGDTVVGWSVNDYNYKPGNAFARDNYKDTDVANI
                     TLYPNVVFEVEDVNGDGTKKGYLTQYGPDEQNKWIFITFDAGKGQLSGSKQSKMVAVS
                     NNLYPIDFSNKKFKEKVESPTLQGHTFVRWQTEDGVVLPESGKITTDTTYKALYLAHP
                     TDKTVVFDANKLTETEKDSLKQAIYDANPDSANLIQSITVSDTGEAKVTYNDGTVVTV
                     PASDLINEDKEPARNLAKEEIDKASKEKVAEINASALTDEEKAAKLTEVQEAKDQANN
                     AIDNATTTEDLTKALEDGKSEINAINTTTSPKKAVAKQDLETAYNAKKDAITNSGLTA
                     EEKDAKQAELDKAKEEADKAIDTATDNAGVDAALEAGKTAIAGIDTSTSPKKAAAKEE
                     LKAAAEDAKNAIDA"
     gene            complement(3857..4516)
                     /locus_tag="U1087_000638"
     CDS             complement(3857..4516)
                     /locus_tag="U1087_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003046130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM4755142.1"
                     /translation="MFLRASGRQAVRFIEPEHLKQFLDYAEQLASRNFTKYYQYVIFK
                     LLLATGCRIGELSALELSDIDLEAGTISISKTYSMELHIIGTTKTKAGTRIISIDKKT
                     VLLLKQYQNRQRLMFLEVGACAPGVVFATTLREYLPRVSLQEVINCRCKALGIPRFTC
                     HAFRHTHASLLLNAGITYKELQYRIGHSNIAMTLDTYGHLSKDKEKEAVLYYEKAMNS
                     L"
     gene            4493..4768
                     /locus_tag="U1087_000639"
                     /pseudo
     CDS             4493..4768
                     /locus_tag="U1087_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941794.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ArpU family transcriptional regulator"
     gene            4937..5128
                     /locus_tag="U1087_000640"
     CDS             4937..5128
                     /locus_tag="U1087_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002263545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HEM4755143.1"
                     /translation="MPLTGKEMAKLAEANGWKEIRVNGSHHHFKKEGFSKIVTIPVHG
                     NKDLGKGLEKKILRDLGLL"
     gene            5164..5541
                     /locus_tag="U1087_000641"
     CDS             5164..5541
                     /locus_tag="U1087_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002282907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HEM4755144.1"
                     /translation="MLKSYPAIFHKDEQGYWVEFPEFSGGTQGDNLEEAMYNARDFLE
                     SSIALYIDEGMELPKVSDIKELSAPDGFVSMIQADPTPYIKNNKAIRKNVTVPEWLTK
                     LADREGLNYSEILTTALETRLQV"
     gene            complement(5863..8130)
                     /gene="glgP"
                     /locus_tag="U1087_000642"
     CDS             complement(5863..8130)
                     /gene="glgP"
                     /locus_tag="U1087_000642"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen/starch/alpha-glucan family
                     phosphorylase"
                     /protein_id="HEM4755145.1"
                     /translation="MINLQNFVQSMYAKRIEDCTDQELYYALLAFTKQQSEAKYTNDQ
                     KKKVYYISAEFLIGKLLSNNLINLGLYDEVKSQLAAAGKDLIASEDVELEPSLGNGGL
                     GRLAACFLDSIASLGLNGDGVGLNYHFGLFRQLFEYHQQSAVPNEWITPRSWLTESPI
                     SYQVPFANFTLTSKLYDIDVPGYKMERKNRLRLFDLGSVDDNIIYDGIEFDKEDIFRN
                     LTLFLYPDDSTDEGKVLRIFQQYFMVSNAAQLLIDEAVAKGSNLHDLPDYAVVQINDT
                     HPSLVIPELIRLLELRGISFDEAVEIVKKMTAYTNHTILSEALEKWPLDFLNRVVPHL
                     VPFIVELDRRAKEVKDDPAVNIIDEHGRVHMAHMDIHYGYSINGVAALHTEILKTSEL
                     KAFYELFPEKFNNKTNGITFRRWLMHANPSLASYLDGLLGHGYHHDASELEKLLEYKN
                     DKELKSWLEKNKQHNKRKLQRHIAKTQGVEVNPESIFDVQIKRMHEYKRQQMNVLYVI
                     HKYLDIKAGNIPARPLTVFFGGKAAPAYTTAQDIIHLILVLSQVIKNDPDVAPHLQLV
                     MIENYNVTEASFIIPAADISEQISLASKEASGTGNMKFMLNGALTIGTDDGANVEIHE
                     LVGDENIYIFGQDSQTVIDHYANGTYHPYSFYEREAIRPLIDFITSDTIRHAGGIDER
                     LWRLQDNLKHNDHFMTLLDLEDYISTKEQMLADYEDRDSWLEKVIVNIAKAGFFSSDR
                     TIQQYNEDIWHLEAK"
     gene            complement(8268..8981)
                     /gene="deoD"
                     /locus_tag="U1087_000643"
     CDS             complement(8268..8981)
                     /gene="deoD"
                     /locus_tag="U1087_000643"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007519526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEM4755146.1"
                     /translation="MSIHISAKPGEIADKILLPGDPLRAKFIAENFLEDAVCFNEVRN
                     MFGYTGTYKGHRVSVMGTGMGMPSISIYAHELINDYGVKKLIRVGTAGSLNKDVHVRE
                     LVLAQAAATNSRMINIDWPEYDLPQIADFDLLDKAYHISKELNLTTHVGNVLSSDSFY
                     SPKLFSRNLELGQLGVKAVEMEAAALYYLGAKFGVQTLAIMTISDSLVNPEEDTTAEE
                     RQNTFTDMMKVGLETLIAE"
     gene            complement(9014..9823)
                     /locus_tag="U1087_000644"
     CDS             complement(9014..9823)
                     /locus_tag="U1087_000644"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEM4755147.1"
                     /translation="MSLLAKINETKTFLEEKGMIKPEFGLILGSGLGELAQEVENAIV
                     IDYADIPNWGKSTVVGHAGKLVYGDLAGRKVLALQGRFHFYEGNPMEVVTFPVRVMKA
                     LGCEGVIVTNAAGGIGYGPGTLMAITDHINMTGQNPLIGENLEEFGPRFPDMSNAYTK
                     EYREKAHAIAEKLGIKLDDGVYLGVTGPTYETPAEILAFKTMGAHAVGMSTVPEVIVA
                     AHSGMKVLGISAITNFAAGFQSELNHEEVVEVTEQIKGNFKGLVKAILAEL"
     gene            complement(9835..10191)
                     /locus_tag="U1087_000645"
     CDS             complement(9835..10191)
                     /locus_tag="U1087_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family transcriptional regulator"
                     /protein_id="HEM4755148.1"
                     /translation="MEKLTVYINPDCSKCKKLRILLSSQGMEVKWVNYLETPLRGAEL
                     TALLKKMDSQPSAVIRLTEEERAELSEEEIFERLVKEPATLNRPIIEREQTAFLCRPL
                     EIIKEKMPEYDWSDYL"
     gene            complement(10191..11402)
                     /locus_tag="U1087_000646"
     CDS             complement(10191..11402)
                     /locus_tag="U1087_000646"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HEM4755149.1"
                     /translation="MPKFKRVHLVVMDSVGIGAAPDSDKFFNAGVADTESDTLGHISE
                     KAGLEVPNMTKIGLGNIPRDTALATVPAESHPTGYVTKLEEVSLGKDTMTGHWEIMGL
                     NITEPFDTFWDGFPEEILTKIEEFSGRKIIREANKPYSGTAVIDDFGPRQMETGELIV
                     YTSADPVLQIAAHEDIIPLDELYRICEYARSITLERPALLGRIIARPYVGEPGNFSRT
                     ANRHDYAVSPFEETVLNKLADAGVPTYSIGKISDIFNGSGITNDMGHTKSNMHGVDVL
                     IDTLKLSDFEEGFSFTNLVDFDAVYGHRRNIEGYRDCLQEFDARIPEIIDNMREDDLL
                     LITADHGNDPSYAGTDHTREYVPLLAYSKAFKGSGVLPVGHFADISATIAENFGVEKA
                     MIGESFLEKLV"
     gene            complement(11729..12403)
                     /gene="rpiA"
                     /locus_tag="U1087_000647"
     CDS             complement(11729..12403)
                     /gene="rpiA"
                     /locus_tag="U1087_000647"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HEM4755150.1"
                     /translation="MTNLKEQVGIKAAEFVTDGMIVGLGTGSTAYYFVQEIGRRVAEE
                     GLQITGVTTSHATAEHAASLGIPLKNIDEVEYVDLTVDGADEVDGDFNGIKGGGAALL
                     MEKVVAVNSKDCIWIVDESKVVQTLGTFKLPVEVVQYGAENLFRLFEKKGYRPSFRMR
                     NGEKHITDMQNFIIDLDLRRIEDTYALAEELDRTVGVVEHGLFIGLISKVIVGTPEGP
                     NLIEKK"
     gene            13512..14885
                     /gene="mnmE"
                     /locus_tag="U1087_000648"
     CDS             13512..14885
                     /gene="mnmE"
                     /locus_tag="U1087_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002906470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HEM4755151.1"
                     /translation="MITKEFDTITAISTPLGEGAIGIVRLSGTDAFAIASKVFKGKDL
                     ATVPSHSLNYGHIIDPATGQVLDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQ
                     LLIRQGARMAEPGEFTKRAFLNGRVDLTQAEAVMDVIRAKTDKAMHNAVRQLDGSLSQ
                     LINDTRQEILNTLAQVEVNIDYPEYDDVEEATTELVREKTLQFQTLLENLLRTARRGK
                     ILREGIATAIIGRPNVGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLI
                     DTAGIRETDDIVEKIGVERSKKALEEADLILLVLNASEPLTEQDRNLLAISDMANRIV
                     LLNKTDLEEKIEADQLPEDVIRISVLKNQNIDQIEEKINQLFFKNAGLVEQDATYLSN
                     SRHISLIEQAVQSLQAVNDGLEMGMPVDLLQVDLTRCWQILGEITGDAAPDELITQLF
                     SQFCLGK"
     gene            14996..16072
                     /locus_tag="U1087_000649"
     CDS             14996..16072
                     /locus_tag="U1087_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755152.1"
                     /translation="MKKIIICIALLSCLVFPFIGWKLYAYQHNKISLTENADFYLVYP
                     GKVEAFQLNGQEPELLHTQKMNSEGYFGSGENYVIDNRYLVFANDQQKFINDNLISID
                     FNTGTVLRKPSQYSSYISGTDGNHFYTAGAYHMLAQFDKQFEAIQTLVLNDDFILHAP
                     VYVDDTSVYLTGVVRELNQDGTEENVLIVFDKKDFSKQEIFKYDNSIATGDGLLVNGT
                     IYLTIFGKRAPEYEDGQVPNELLTFDTRSKTFSSIKLEHPSPSTLHALKDENLLLIEH
                     QNGMFSPLSFTIYNTQTGEQSYHTLKDLNPRPHYIDHIRQIDDKRLMIILANQLLIYD
                     MEAKSITSQTTLSEDYVSGVWINP"
     gene            complement(16105..16686)
                     /locus_tag="U1087_000650"
     CDS             complement(16105..16686)
                     /locus_tag="U1087_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HEM4755153.1"
                     /translation="MKKKWLAILIPVFALLFLGMGAIGQYNGLVDSHAEVENAQANVD
                     TQLQRRYDLIPNVVAAVKGAMEHEEEIFTAIADARAKIGSSQVGTSDYNQAQSQLDSA
                     VSRLLMVTENYPQLTANQQVSDLITELEGTENRILVARKDYNAVATAYNKKIKRFPTS
                     LYANLFGYEKVDLFQASTDAATTVPSVDLQDEE"
     gene            complement(16702..17481)
                     /locus_tag="U1087_000651"
     CDS             complement(16702..17481)
                     /locus_tag="U1087_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HEM4755154.1"
                     /translation="MKKYLYYLLGFLLLLFSLGQPSLVGAEGIPARPIDTTVVDETQL
                     LSSETIANIDQLNQTWAASEQQLQVGVYVTESLSRDIESLSNATFRDWQVGFAGTDNG
                     ILLVIAIADREFRIETSDNAATVLTDVEAKDILENAREFFRQEDYDGGVTYIVQSIGD
                     RFYGTSLGQEQLAAMEERTSAESDSFVWFMIVILVVIIFMIIDKSSRGGGGPGNLLWM
                     LVDDRHHYHNNHSSHSSSSSSFGGGGWSGGGGGGGGASSGW"
     gene            complement(17541..18119)
                     /locus_tag="U1087_000652"
     CDS             complement(17541..18119)
                     /locus_tag="U1087_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003092921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HEM4755155.1"
                     /translation="MELVDIRQAIIEDVANREFTNKGIAPLFQAPSTAKILIIGQAPG
                     LKTQEKGRLFDDASGDNLRKWLGVDRQTFYESGHFAILPMDFYYPGKGKSGDLPPRKD
                     FAPKWHPLILDQLPELELTILVGNYAQTYYLEKSQRNLTKRVKHADDYLPTYFPLPHP
                     SPRNNIWQAKNPWFQAEIIPNLQNILMKILEK"
     gene            complement(18106..18564)
                     /locus_tag="U1087_000653"
     CDS             complement(18106..18564)
                     /locus_tag="U1087_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM4755156.1"
                     /translation="MKLKELCFSDMEMVKQLFLSVFSQEPWNDDWSDEEQLDRYIGDL
                     LAHPRALCFGLFDQEKLIGLSLGYIRYWYEGTEYRIEEFCMSRDYQGQGHGASFLADI
                     EKQLAERKIVHILLQTERTLPAYSFYKKCGFRALEEDVTMVKKVGHHGTC"
BASE COUNT         5286 a         4190 c         3592 g         5536 t
ORIGIN      
        1 gcatcgatag cgttcttagc atcttctgct gccgctttaa gttcttcctt agcggctgct
       61 ttcttaggac ttgtgcttgt gtcgattcca gcaatggctg ttttgccagc ttcaagtgct
      121 gcgtctacac ctgcattatc tgttgctgtg tcgatagctt tatctgcttc ctctttagct
      181 ttatccaatt ctgcttgttt tgcgtctttt tcttcagctg tcaaacctga attggtaatc
      241 gcatctttct tagcattgta ggctgtttcc aagtcttgct tagcaactgc tttcttagga
      301 cttgtagttg tattgattgc gttaatctct gatttgccat cctcaagagc cttagttaag
      361 tcttcagtag tagtagcatt atcaattgca ttattagctt ggtcttttgc ttcttgaact
      421 tccgtcagtt tggctgcttt ctcctcatca gtaagggcag aagcattgat ttcagcaacc
      481 ttctcttttg atgctttatc aatttcctct ttcgcaagat ttcttgcagg ctctttatct
      541 tcattgatga ggtctgatgc tggaactgtt acgacagtac cgtcattata ggttactttt
      601 gcttcacctg tatcagatac agtaatgctt tgaatgaggt tagcgctatc tggatttgca
      661 tcgtaaatcg cttgttttaa actatccttc tcagtctcag ttagtttatt ggcatcaaag
      721 acgacagtct tgtctgttgg atgggcaagg tagagtgctt tatatgttgt atccgttgtg
      781 attttaccac tctcaggtaa cacaacccca tcctctgttt gccaacgcac aaaggtatgt
      841 ccctgaagag taggcgactc aactttttct ttaaactttt tattactaaa atcaatagga
      901 tagagattgt tgctcacagc taccatttta gattgttttg agccactgag ttgaccttta
      961 ccagcatcaa acgtgataaa aatccattta ttttgctcat ctggaccata ctgtgttaga
     1021 tagccttttt tagttccatc accattcaca tcttcaactt caaaaacgac gtttggatac
     1081 aaggttatat tagctacatc agtatcctta taattgtcac gtgcaaaagc atttcctggt
     1141 ttataattat aatcatttac agaccaacca acaaccgtgt cgccttcatc tgtttttaca
     1201 gtcggccatt gccaagcagg gtcatctaac aatgttcccc atgtcacacc atttttgaca
     1261 aatactttta ccgaagagcc agtttgagta cctaatgtaa aacctctagt atatttatgt
     1321 cctgcaaatg ttacagttac gtagccctga ggtgctggtt ccgatgcaga acttgggatt
     1381 ttaataatcg ctgtgtatgt agactcaata gtcgctttac cattgttaag agccccttca
     1441 acagccgaat ctgttgttgc atcatcaact gcttttatag cattttcctt agctttactc
     1501 aagtcagctt gtttaatagc tttttcgtca gctgtaagta cagaattttc aatttctgct
     1561 ttctcagtat tgtaggcttc ttcaagagct tccttagctt ttgtttttat agtactagtt
     1621 gtgctaactg cttcaatcgc tgctgtacca tccgaaatag ccttagttaa gtcttcagta
     1681 gtagtagctt tatcaattgc aatatcagct cgatcttttg catcttgaac gtccgctaac
     1741 ttagctgctt tctcctcatt agtaagagtt gaggcattga tggcagcact cttttccatt
     1801 gcatcttttt caatttctgc tttggcattg cttttagcag tagccttgtc ttcgttggtg
     1861 agagttgcgg atggaacttt aactgcggta tcatcattaa atgttacagt agcttcacct
     1921 gtatcggata tctcaatcgc tttgatgact tgcggaaccc ctgtacttaa atcagggttt
     1981 gcatcatata tcttttgctt gacctgttct ttctcggaat ctgttaactt tgtactatca
     2041 aatacagcta cctggttttg tggatgcgca agatacagtg cctcataggt tgtttcagtt
     2101 gtgattgtcc cactcttagg taacactacc ccatcccgtg tttgccaacg cacaaaggta
     2161 tgattagcta atgtaggact tacaacctta ctagtaaatt gacggttatc ataaccaata
     2221 ccttggaaat acgcagctac agaacgtgaa gtgtattgtt tattcttata agtcattgaa
     2281 ccttttccgg catcaaaggt tacaatcaac catttacttt tcccctctgg actataccaa
     2341 gctagaaaag cattaacatt ggcatttagt ggctctactt cttcaacctc ataaccaact
     2401 acagggaaaa aataagtagt agtaactggc tggtctttct ttttgttgaa atcaaaacga
     2461 ttactatagc cataaccaat gttccaatca ataaaaacat ctccatcgtt aggtttcatc
     2521 gttggccatc gccaattggg gtcctctatc aattgccccc aagtagtccc ttccttaacc
     2581 caaaatctca cttctaactg aataggtcta ctattaatag attgtttagt ggcattcgga
     2641 aattctcctg gcaagttatt gaacacatat gaaccatatt caggtttttg aaatgaaaca
     2701 aggacatacc cattaggaac tggatcactt tccgatgtcg gaaatttgat aatcggttca
     2761 tctacagttg ggttagtcgt accatctcct tgtgttccag tatttgctga acgtgaggtt
     2821 cctactggtt ggctacttgc tgaacctgta tcacctgcag gctggacatt cgcagttgag
     2881 tttgttgtat taccagtctg aactcctgag ctattgttcc cttgattatc cgattgctgt
     2941 tgcgttgttg aagttgtgcc atcggaagtt ccacccccat tgactcctgt ttcagcgcct
     3001 acaatcgttc ctgcaccaag aaccaaggtc gtacctaaca gaacacttgc agcaccaata
     3061 tgatatttac ggatagagaa acgctggcgc gctccatacc aatcaaatga tttctttttc
     3121 gaacgattca tatcgtcact ccttttgaat aaatattacc agagaaaaaa gaagcgttca
     3181 aaaaatcagt tttccctagt ttcaagtcac caagactctg agttaattat acctcacccc
     3241 ccccgatttt caagtatttt agtacattct ttgtaccgca cgttgtaaag tcaagtgcaa
     3301 caagttcatt gatgactaga gttctagaat ccaagaagaa ggtatctatt tcgacatcac
     3361 gataaaagca aaattacatg aactccttta tctgcttttt aaacatcgcc atgtagacag
     3421 acactatact gatgataccg accaaaaatt ccaaaagctc aaggaattgt tccgattatc
     3481 attcacaaat taattgcaac tcactttaga gattagtaat tttaatactc atttaaaatc
     3541 aaaagtagct atctactaat caaattgtat atagagaatt tcaattttga agttgtcgaa
     3601 aagagaatgg ctagtcaaaa tctatgattt ccaatctgag cttagatatt gaaattttac
     3661 acatagaaat tgacctcaat atgctatttt tgatttttaa tgagtattag atatgtcctg
     3721 tttttaattc actcgactat ccaatccacg gattttcata atattttttc ttttatcctt
     3781 tcaaacgttg atttcatgca gtttctagca ccttgtattt agttgatttt gtaatttgtt
     3841 cacctttttg ttcaccctaa agactattca tggctttttc gtaatataaa accgcttctt
     3901 tttccttgtc tttggatagg tgaccatatg tatctaaagt catagcgata ttggaatgac
     3961 cgatcctata ttgtaattcc ttataagtga taccagcgtt caacagtaaa ctagcgtggg
     4021 tatggcggaa tgcgtgacaa gtaaaacgag gaatacccaa agccttacac cgacaattta
     4081 taacttcttg tagtgaaacc cgtgggaggt attcccttaa agttgtcgca aagacaacac
     4141 caggagcaca cgcgccaacc tcaagaaaca tcaagcgttg acgattttga tattgtttca
     4201 gcaagagaac tgtttttttg tctatgctga taatacgggt acccgccttt gtctttgttg
     4261 tcccgataat gtgtagttcc atgctatagg ttttactgat tgatattgta ccagcttcta
     4321 ggtcaatatc agacaattca agggcagaca attcaccaat acgacaacca gtggcaagta
     4381 ataacttaaa aataacatat tggtaatact tggtaaagtt cctacttgct aattgttcag
     4441 cataatcgag aaactgtttt aagtgttcag gttcgataaa cctgaccgcc tgacgacccg
     4501 aagcacgcaa gaagatagat tactgaacgc tatcgcagta agtcaggaag tggatgaaat
     4561 agagcgagct atctcaaact tggataagtt acacagtgac atacttacag agaagtatat
     4621 caagcgtcag aaaacaggtt tggcactcta tgaaagtttt tacatgggaa agtctatgtt
     4681 ttacgaagca ttacaaacag ctttgttaga ctttgcttgt atatttaaga atggggaact
     4741 attgcagtat aaagacggac agggctaata ttcgcaaaat acccccaatt ttttaatcgg
     4801 gggtgggttt gttcgtgatt ccacaacgcc ggccctttcc gtgcacaatt ttcccttttt
     4861 gaagttttta agataaaaga atttgacaaa tgcgcataat gtgtatataa taaataatgt
     4921 aaggaggtag agcgctatgc cacttactgg aaaagaaatg gcaaaacttg cagaggctaa
     4981 cgggtggaaa gaaatccgag tcaatggaag tcaccaccat ttcaaaaaag aaggattttc
     5041 aaaaatagtc acaatcccag ttcatggaaa caaggacttg ggcaaagggc tagaaaagaa
     5101 aatcctgaga gatttggggc tactttgaaa tgcccctcct ttttcgcttt tggaggtaga
     5161 aacatgttaa aatcttaccc agctattttt cataaagatg aacaaggtta ttgggtggag
     5221 ttcccagagt ttagtggtgg tactcaaggg gataaccttg aggaagctat gtacaatgcc
     5281 cgtgattttt tagaaagctc tattgccctt tatattgatg aggggatgga gttaccaaaa
     5341 gtaagcgata taaaggagtt aagcgctcct gatggctttg tttcaatgat acaagctgat
     5401 ccaacaccgt atattaagaa taataaagca attagaaaga atgtgacagt gcctgaatgg
     5461 ttaacaaaat tggcagaccg tgagggtttg aactattcgg aaattttaac aacggcttta
     5521 gaaacacgat tacaagtgta aacatgatat aatacactta ccagcaatca aaaaaagcgc
     5581 atcaattcga tacgctagtt acttgcctgc taaactcata aaatttttga ggttatcgcc
     5641 ctttgataac ctttttttca ttgtaaaatt tgttcacctt tttgttcacc ctgaggggga
     5701 acataaggaa atataaagag atacgatttt ttaaaaaacc agtaaaatca cgagtttggg
     5761 agttataaca ctctcaaacg ttagtcaaat ttcaattcca caacaactca tactttcaaa
     5821 gtcagaacac aaaaaatgac cccgcaaggt catttttagt ttctatttcg cttccaaatg
     5881 ccaaatatct tcattgtact gttgaatcgt acggtctgac gagaagaaac cagccttggc
     5941 aatgttgacg atgacttttt ccaaccagct gtcgcgatct tcgtagtctg ctaacatctg
     6001 ctctttagtc gagatataat cttccaagtc aagcaaggtc atgaagtggt cattgtgctt
     6061 aaggttgtcc tgtaagcgcc agagacgttc atcgatacca ccagcatgac gaatggtgtc
     6121 agaagtgatg aaatcaatca atggacggat ggcttcacgt tcgtagaagg aatatggatg
     6181 gtaagttcca tttgcatagt ggtcgataac agtctggcta tcttgaccga agatgtagat
     6241 attttcatcg ccgaccaatt catgaatttc cacgttggca ccgtcatctg taccaatagt
     6301 caaggcgccg ttgagcatga atttcatgtt accagtacca gaagcttctt tagatgcaag
     6361 ggaaatttgc tctgaaatgt ctgccgctgg aatgatgaag ctggcttccg ttacgttata
     6421 gttttcaatc atgaccaact gcaaatgtgg tgccacatca ggatcatttt taatcacctg
     6481 tgacaatacc aaaatcagat gaatgatgtc ttgtgccgta gtgtaagctg gtgccgcttt
     6541 tccaccaaag aagacagtca atggacgcgc ggggatattc ccagccttga tgtccaaata
     6601 cttgtgaatg acataaagaa cattcatttg ttgacgcttg tactcgtgca ttcgcttgat
     6661 ttgcacgtca aagatggact ctggattaac ttcaacacct tgagttttag caatatgacg
     6721 ttgtaattta cgcttgttgt gttgcttgtt tttttccaac caagatttca gttccttatc
     6781 attcttgtat tctaaaagtt tttccaactc gctagcatcg tgatgatagc catgtccaag
     6841 taggccgtcc aggtagcttg ccaaacttgg attagcatgc atgagccagc gacggaaggt
     6901 aatcccattt gtcttattat tgaatttttc aggaaatagc tcatagaaag ctttcaactc
     6961 tgaagttttc aagatctctg tatgaagtgc cgccacccca ttgatagaat aaccataatg
     7021 aatatccatg tgtgccatgt gaacacggcc atgttcatcg atgatattga cagcaggatc
     7081 atccttcact tctttggcac gacgatccaa ttctacgatg aacggtacca agtgcggaac
     7141 cacacgattc aagaaatcaa gcggccattt ttccagcgcc tctgacaaga tggtatggtt
     7201 ggtataagca gtcattttct taacaatttc aactgcctca tcaaacgaaa taccacggag
     7261 ctccaaaagt cgaatcaatt ctggaataac aagtgatgga tgggtatcgt tgatttgaac
     7321 aacggcataa tcaggtaggt catgtaagtt tgatccctta gcaaccgctt cgtcaatcaa
     7381 tagttgcgca gcgttagaca ccataaaata ctgctggaag atgcggagaa cttttccttc
     7441 atcggtcgaa tcatctggat agaggaagag agtcaagttt cggaaaatat cttccttatc
     7501 aaactcgatt ccatcataga tgatattgtc atccacagaa ccaagatcaa acaaacgcaa
     7561 gcgattcttg cgttccattt tataaccagg cacatcgata tcgtacaact tagatgtcaa
     7621 agtaaagtta gcgaaaggta cttggtaaga aattggtgac tcagtcaacc atgaacgtgg
     7681 tgtaatccac tcgtttggca cagctgactg ctgatggtat tcgaataatt gtctaaacag
     7741 tccaaagtga taattcaagc cgaccccatc accgttaaga cctagactag cgatggaatc
     7801 aaggaagcag gctgccaaac gccccaaacc accgttacca agagatggct ccaactcaac
     7861 atcttcacta gcaatcaaat ccttgcctgc agcagctaac tggcttttca cctcgtcata
     7921 aagaccaagg ttaattaaat tattagacaa gagcttacca attaagaact ctgctgaaat
     7981 atagtaaacc tttttcttct ggtcattagt atatttggct tcactttgct gttttgtaaa
     8041 agcaagtaag gcgtagtaga gctcttggtc tgtacaatcc tcaatacgtt tagcatacat
     8101 ggattgaaca aaattttgta aatttatcat aaggtttctc ctggatatta atgtaatcat
     8161 tcagaaagat ttcgttcttt ctttgtaacc gttttcttga ttatacccta tttataaaaa
     8221 aaagacaagc tattatacaa aattgcataa atagtttgcc tattttttta ttctgcaatc
     8281 agagtttcca aaccaacctt catcatatcc gtgaaagtat tttgacgctc ttctgctgtg
     8341 gtgtcttcct ctggattaac caagctatcc gagatagtca tgatagccag cgtttgaacg
     8401 ccaaacttag cacctaggta ataaagtgca gctgcttcca tttcgactgc cttgacacct
     8461 agttgaccta attctaagtt gcgactaaac aattttggag aatagaaact atctgatgat
     8521 aaaacattgc caacatgagt ggtcagattg agttctttgg agatatgata agccttatct
     8581 aaaagatcaa aatcagcgat ttgtggcaaa tcgtactctg gccagtcaat attgatcatg
     8641 cgagaattag ttgctgcagc ctgagccaag accaactcac ggacatgaac atccttgttg
     8701 agcgaaccgg cagttcctac acggattagc tttttcacac cgtagtcatt gataagctca
     8761 tgggcgtaga tagagatgga tggcattccc atacctgttc ccatgacaga tacgcgatga
     8821 cctttgtaag tacctgtgta gccgaacata ttgcggactt cgttgaagca aacggcatct
     8881 tcaaggaagt tttcagcgat aaatttagca cgaagcggat caccaggaag caaaatctta
     8941 tcagcgattt cacctggttt tgcggaaata tgaatagaca tgtaatgtac ctctttgttc
     9001 tattttcgaa tgcttacaac tcagccaaga tagctttcac caagcccttg aagttgccct
     9061 tgatttgctc ggttacttct acaacttctt cgtgattgag ttcagattgg aaaccagccg
     9121 caaagtttgt gatagcagag atacccaaaa ctttcatgcc tgagtgagct gccacgataa
     9181 cttctggtac tgttgacata ccgactgcgt gggcccccat ggtcttgaag gccaagattt
     9241 cagcaggtgt ttcataggta gggcctgtca caccgagata gacaccatcg tccaacttga
     9301 tacccaattt ttccgcaatg gcatgggctt tttcacggta ttcttttgta taggcatttg
     9361 acatgtctgg gaaacgtgga ccaaattctt ccaagttttc gccaatcaat ggattttggc
     9421 cagtcatgtt gatgtggtct gtaatggcca tgagagtacc tggaccgtaa ccgataccac
     9481 ctgcggcatt agtaacaatc acgccttcac aaccaagagc tttcatgaca cggactggga
     9541 aagtcacaac ttccatcgga tttccttcgt agaagtggaa tcgaccttga agagccaaga
     9601 ccttacgtcc tgccaaatca ccgtacacca acttaccagc atgacctaca actgttgact
     9661 tgccccagtt tggaatatct gcatagtcaa tgacaatggc attttcaacc tcttgagcca
     9721 attcacccaa gccagaaccc aaaatcaaac caaattctgg cttaatcatt cctttttctt
     9781 ctaagaaggt ttttgtttca ttgatttttg caagtaaact catattttct ccttttataa
     9841 ataatccgac cagtcatatt ctggcatttt ttctttaatg atttcaagtg gacgacagag
     9901 gaaggctgtc tgctctctct cgataatggg gcgattgaga gtagcaggct ctttaactaa
     9961 acgctcaaag atttcttctt cagacaattc tgctcgttcc tcttccgtca accgaataac
    10021 tgccgatggc tgactgtcca tttttttcaa aagagctgtc aattcagctc cccttaatgg
    10081 cgtttccaaa taattaaccc acttgacttc cataccctga ctggacagca atattcttaa
    10141 ttttttacac ttgctacagt caggattgat atagaccgtt agcttctcca ttaaactagt
    10201 ttctccaaga agctttcacc aatcatggct ttttcgacac cgaagttttc agcaatggta
    10261 gctgagatgt ccgcaaaatg gcctactggc aagacaccgc tacctttgaa agccttgctg
    10321 tatgctaaga gtggcacata ttcgcgtgtg tgatctgttc cagcatagga tggatcattg
    10381 ccgtggtcag ctgtaatcaa gagcaaatca tcttcacgca tattgtcaat aatctctgga
    10441 atacgtgcat caaactcttg caaacaatcg cggtagcctt cgatattgcg acggtgacca
    10501 tacacagcat caaagtcaac taagtttgtg aaggagaaac cttcctcgaa gtctgataac
    10561 ttcagagtat caatcaacac atcgacaccg tgcatgttgg acttggtgtg acccatatca
    10621 tttgtaatac ctgaaccatt gaaaatatca ctgattttac caattgagta agttggtaca
    10681 cccgcatctg ctagtttgtt gagtactgtt tcttcaaacg gtgatactgc atagtcgtga
    10741 cggttggcag ttcgtgagaa attgcctggc tcaccaacgt atggacgggc aataatccga
    10801 ccaagaagag ctggacgttc aagggtaatg gaacgagcat attcacagat acgatacaat
    10861 tcgtccaagg gaataatgtc ttcatgggct gcaatctgaa ggacagggtc tgcggaggta
    10921 tatacgatca actccccagt ttccatttgg cgaggaccaa agtcatcaat aacagctgta
    10981 ccagagtacg gcttgtttgc ctcgcggatg attttacggc ctgagaattc ttcgattttt
    11041 gtcaaaatct cttcagggaa accatcccag aatgtatcaa atggctcagt aatattgagg
    11101 cccatgattt cccagtggcc tgtcatggtg tcttttccga gcgacacttc ttccagcttg
    11161 gtcacgtagc cagttggatg actttcagca ggaaccgtcg caagagctgt gtcacgaggg
    11221 atgttcccaa gaccaatctt ggtcatatta ggcacctcaa gcccagcttt ttcagaaatg
    11281 tggccgagag tgtcagattc tgtatctgct acacccgcat tgaaaaattt atctgagtct
    11341 ggtgctgcgc cgattccgac agagtccata actaccaagt gaacacgttt aaatttaggc
    11401 ataattgtct cctttatttg aatagttaga ttcaaccaaa atcaacgtcc acccaagttg
    11461 ctagactgga aattatcgtc accacaccta aacattttaa tggggtgcaa tactatacag
    11521 tcaaagctct cggcatcaaa cttcctaacc atcaaaacta gatactgtta ctcgcttcac
    11581 tgcctgctgt tcagctatcg ctttttcagt acctatcatc tgactgctac gaggtaaggg
    11641 gatagatttt tgaagagtct aaacgttcgt gttttcatta taccataaaa aagcttctca
    11701 ttgtaccaaa atgagaagcg gtttcaattt atttcttttc gatgaggttc ggtccttctg
    11761 gtgtaccgac aattacctta gaaatcaagc caataaagag accgtgttca acgacaccga
    11821 cggtccgatc caattcttcc gccaatgcat atgtgtcttc tattctgcgc aaatcaaggt
    11881 caatgataaa gttctgcata tccgtgatat gtttttctcc attacgcata cgaaaacttg
    11941 gacgataccc ttttttctca aatagtcgga aaagattttc cgcaccgtac tgcacgactt
    12001 ccactggcaa cttgaaggta cctagggttt gaaccacctt agactcatcc acaatccaga
    12061 tacagtcctt gctattaact gctaccactt tctccatgag aagcgctgcg ccaccgcctt
    12121 taatcccatt gaagtcccca tccacctcat cggctccatc caccgtcaag tccacatatt
    12181 cgacttcgtc gatatttttt aggggaatcc caagggacgc agcatgttct gccgtagcat
    12241 gagaggtcgt tacgcctgtg atctgtagcc cttcttctgc aacccggcgg ccaatctcct
    12301 gcacgaaata gtaggcagtc gaaccagttc ccagcccaac aatcatcccg tcggtcacaa
    12361 actccgccgc cttaatccca acctgctctt taagatttgt catctttgtc tcctttgaag
    12421 tcattcatga aataattata ccacagctaa gacagcagtt caaaataaca actcaaactt
    12481 cagacagcaa agactacaat atgtgcatag tgactaatgc tgaaattatt tttcaatcat
    12541 aagacttggg aaaaaggagt caatatcatg ttttatctgg tcaagattat caatcctttt
    12601 taccataata ttctcctaca ttacaattta cgtaactctt ccctaacctc atccttgctt
    12661 accgcctcat taaagaacgg caatccgaca atacgatagc ggtcatcatc aaccagtgtt
    12721 ctcaccccat ctcgttcaga aatttgatac ccttcggttt tcttaaattt ttatgtttct
    12781 attataacat agttaaccta aattaatagc aacacttttt gtatttctat caaattatct
    12841 tctcaaatta attactatat ttattgccct ctcaatacat ttctgcactc ctcatccctc
    12901 atctgtgctt tttttatcat tccatgttaa acttataagt aagatttaaa cctgtattca
    12961 cagttcagca cttccatcta aggctagttt atcagctatt catcgttagt ttttttggag
    13021 tgagaaagaa ctcaattggt caccaaaaga gttcccctca cttccaatac agtagcttcg
    13081 gcctctatgg tcactttcta gttttaaggt gaccagctga aacagttccc caaactgttt
    13141 cactccatcg gactatttta ctcccacccc cgcacagctc caaaggtttg gggaaccttt
    13201 ggaggtcgga gatagagcga acagagttcg ctacaaaaca gtcagagtag tgactgttgg
    13261 aggttggaga tatagcgaac aaagttcgca acagtcgtag atgtcagatt tggaatgtga
    13321 aacacgaact gcggagattt gttgtacaca cctttaacag tccactgcgc tgagatgttg
    13381 acacgaaccc tgagaagtgg ggctgggctt gagcccatcc ccaaaaaaac tgccttgatt
    13441 agcgacaaac tatctctttt ctaaaagcac tttacttgta aatacagatt ctagttagaa
    13501 agcacattat tatgatcacc aaagaattcg atacaataac cgctatttca actcctctcg
    13561 gtgagggggc cattgggatt gtccgcctgt ctgggacgga tgcttttgcc attgccagca
    13621 aggttttcaa aggaaaagac cttgcgactg tacccagtca cagcctcaac tacggtcata
    13681 tcatcgaccc tgcgacgggt caagtgctgg acgaggttat gatcggagcc atgcgttccc
    13741 caaagacctt cacgcgcgaa gatgtcattg agattaatac ccacggaggc atcgccgtta
    13801 ccaacgaaat cctccagctc ctgattcgcc aaggggctcg aatggctgag ccgggcgagt
    13861 ttaccaagcg tgcctttctc aacggtcgtg tggatttgac tcaggccgag gccgtcatgg
    13921 atgtcatccg tgccaagacc gacaaggcca tgcacaatgc cgtccgccag cttgacggct
    13981 ccctctccca gctcatcaac gacacgcgcc aagagattct caatacgctg gcacaggtcg
    14041 aggtcaacat cgactaccct gagtatgacg acgtcgagga agcgacgaca gagctggtcc
    14101 gtgagaagac cctccagttc caaaccctgt tggaaaatct ccttcgtacc gcccgccgtg
    14161 gtaaaatctt gcgtgaaggc atcgcaaccg ccattattgg tcgtcccaat gtgggaaaat
    14221 ccagcctgct caataatctt ctccgcgagg aaaaagccat cgttacagac atcgctggaa
    14281 caacccgcga cgttatcgaa gaatacgtca acatcaaagg cgtccccctc aagctgattg
    14341 atacagcagg tatccgcgaa actgacgaca tcgttgaaaa aatcggtgtg gaacgatcta
    14401 aaaaagccct tgaggaggcc gacctcatcc tactagtcct caacgcatcc gagccactga
    14461 ccgagcaaga tcgtaacctc ctagctattt ctgatatggc aaaccgtatc gtcctgctca
    14521 acaagaccga cctggaagag aagattgaag cagaccagct gcctgaggat gtcatccgca
    14581 tttctgtctt gaaaaaccaa aacatcgacc aaatcgaaga aaaaatcaac cagctcttct
    14641 ttaaaaatgc tggtctggta gagcaagatg ccacctacct ctccaattcc cgtcatattt
    14701 ccctgattga gcaagccgtc caaagcctac aagctgtcaa cgatgggctg gaaatgggta
    14761 tgcccgttga cttattacag gttgacctga cccgctgttg gcaaattttg ggggaaataa
    14821 caggggatgc tgctccagat gaactcatta cccaactctt tagccaattc tgtcttggaa
    14881 aatagtatca catatcatgc aagaaaattt gcatgatttt tattatatta acacaaaaat
    14941 atttgattat ctttaccatt taagatatac taaactatag agaggaggtc tttccatgaa
    15001 aaaaatcatc atctgtattg cacttctatc ctgtcttgtc tttccattta tcggatggaa
    15061 actctacgcc taccagcaca acaaaataag tttgactgag aatgcagatt tctacttggt
    15121 ttatcccggt aaggtcgaag cctttcagct aaatggtcaa gaaccagagc tgcttcatac
    15181 tcaaaaaatg aattcagaag gctattttgg ctctggtgaa aattatgtca tagacaatcg
    15241 gtatctagtc tttgccaacg atcagcaaaa attcattaac gacaatctga tatccatcga
    15301 tttcaatact ggcactgtct tgcgaaagcc aagtcagtat agtagctata tcagtggtac
    15361 agatggaaac catttctata cagcaggtgc ttatcatatg cttgcgcaat ttgataagca
    15421 atttgaagcc attcaaacgc ttgtcctcaa tgatgacttc atcctacatg ccccagtcta
    15481 tgtggatgat acttctgtat atttgacagg ggtggttaga gaattgaacc aagacgggac
    15541 agaagaaaat gtcttgattg tatttgataa gaaagatttt tcgaaacaag aaatattcaa
    15601 gtacgacaat agcattgcaa caggcgatgg actgttggtc aatggaacca tctatctcac
    15661 tatttttggc aagagagctc cagaatacga agatgggcaa gttcctaatg aactcctgac
    15721 cttcgataca cgttccaaaa cattttcatc catcaagctg gaacacccct caccaagcac
    15781 actacatgct ctcaaagacg aaaaccttct tctcatcgag catcaaaatg gcatgtttag
    15841 cccactttcc tttactattt acaataccca aactggcgag caatcctacc atactttgaa
    15901 ggacttaaat ccccgtcctc actacatcga ccatatccgt caaatcgatg acaagcgctt
    15961 aatgataatt ttggcaaatc aactcctcat ttatgatatg gaggctaaga gcattaccag
    16021 ccagaccact ctgtcagaag actatgtttc tggagtttgg attaatccat aaaataaata
    16081 actcggctaa gtgagccgag ttctttattc ttcatcttgt aaatccacac ttggcacggt
    16141 tgtcgccgca tcagtactag cttggaacag gtcgactttt tcatagccaa ataggttggc
    16201 gtagagggaa gtcgggaacc gtttgatttt tttattatag gcagttgcta ccgcattata
    16261 atccttgcgg gcaaccaaaa tccgattttc agtcccctct agctcggtaa tgaggtcaga
    16321 tacctgttga ttggctgtta attgcggata attttccgtc accatcagca aacgtgacac
    16381 tgccgaatcc agctgacttt gtgcctgatt gtagtcgctg gttcctactt ggctagatcc
    16441 gattttcgca cgcgcatccg caatggctgt gaaaatctct tcctcatgct ccatagctcc
    16501 cttgactgct gccacgacat tcggaatcag gtcatagcgc cgttgaagct gggtatccac
    16561 attggcctgg gcattttcca cttctgcatg gctatcaacc agtccattgt attgaccgat
    16621 tgcccccatt cctaaaaata gcagagcgaa aactgggatt agtatggcta accatttctt
    16681 tttcataaac attttccttt cttaccaacc agatgaggct ccgccaccgc caccaccgcc
    16741 gccagaccag ccccctccac cgaatgatga agaagatgaa gaatgggaag aatgattgtt
    16801 gtggtaatga tggcggtcat ctaccagcat ccagagcaga ttgcctggac ctccgccacc
    16861 acggctggat ttatcaataa tcataaagat aatgacaacg agaatgacaa tcataaacca
    16921 gacaaaacta tcactttccg cactggtcct ttcttccatg gctgccagtt gttcctgacc
    16981 cagactagtc ccgtagaagc gatctccgat ggattggaca atgtaggtca ctccgccatc
    17041 atagtcttcc tgacggaaaa actccctagc attttccaga atatccttgg cttccacatc
    17101 tgtcaacacc gtggcagcat tgtcggaggt ctctatccga aactccctgt cggctatggc
    17161 aatcaccaag agaataccgt tgtccgttcc tgcaaaacca acctgccagt cacggaaagt
    17221 tgcgttggat agactttcaa tatcccttga aagactttcg gtcacataga ccccaacctg
    17281 taactgctgc tcacttgccg cccaggtctg attgagttgg tcaatgttgg caatggtttc
    17341 actagaaaga agctgggttt catcaaccac agtcgtatca attggacggg ctggaattcc
    17401 ctcagctcct accagactag gctgacctag gctgaacaat aaaagcaaga aacccaataa
    17461 ataatacaaa tactttttca tacggcacct cctcaaaaag aagaaaacgc attcttttat
    17521 attattgtac catatttacc ttatttttca agtattttca taagtatatt ttgtaaattt
    17581 ggaatgattt ccgcttgaaa ccagggattc tttgcctgcc agatattgtt tctaggtgat
    17641 ggatggggca aaggaaaata agtgggaagg taatcatctg catgtttcac tctcttcgtc
    17701 aggttccttt gggatttttc caaataataa gtttgagcat aattgcctac caatatggtc
    17761 agctcaagct ctggtagttg gtccagaata agtggatgcc atttgggcgc aaaatcctta
    17821 cgaggcggca aatccccaga cttccctttt cctggataat agaaatccat aggaagaata
    17881 gcaaaatgac ccgattcata aaatgtctga cgatccacgc ccaaccattt acgaagattg
    17941 tctccactgg catcgtcaaa taaacgccct ttttcctggg ttttcaagcc aggtgcctgt
    18001 ccaataatga gaatttttgc ggtcgaaggt gcttggaaaa ggggagctat tcccttgttt
    18061 gtaaactctc ggttagcaac atcctcaatg atggcttgac gaatatcaac aagttccatg
    18121 atgtcctact ttcttaacca tggtcacatc ttcttctaag gctcggaaac cgcatttttt
    18181 gtagaaagaa taggctggaa gagtacgttc ggtttgcagg agaatatgca caatctttct
    18241 ctcagctaac tgcttctcaa tgtcagctaa aaaactagca ccatgtcctt gcccttggta
    18301 atcacgggac atgcagaact cttcaattcg gtattcggtc ccctcatacc aatagcggat
    18361 gtaaccaagt gacagaccta tcaatttttc ttgatcaaac aagccaaaac agagtgctct
    18421 tggatgtgcc agtaaatcgc ctatgtagcg gtctaattgt tcctcatctg accaatcatc
    18481 attccaaggt tcttggctga agacagacaa gaagagctgt ttaaccattt ccatgtctga
    18541 aaaacaaagt tctttcagtt tcatatttcc tcctaaaaag ggagtgggaa agaactcgac
    18601 tagt
//
LOCUS       DASFRC010000027        18513 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.027, whole genome shotgun sequence.
ACCESSION   DASFRC010000027 DASFRC010000000
VERSION     DASFRC010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 18513)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18513)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18513
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.027"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..2548)
                     /locus_tag="U1087_000654"
     CDS             complement(<1..2548)
                     /locus_tag="U1087_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HEM4755157.1"
                     /translation="MKLIKQLIHILISIGLIGSFFLYAHLIQNELGSTKNDGMIEIIA
                     EQPNQVIDSIQINGRYIHSSEIIENQWGINDADLIPNFSSLGEENSLIIKSSSSVRTL
                     SFEYFVSENPTIVKIKVGGQLVESIDTSTGDKYKNLAFIELPYTLRITKDNQFWYLHL
                     IVLALGLSCFILNGSTWRIKRRHISILTILLITQYIFTTFTFPRLYRNELVLFNSSFN
                     KMETQQLLVALTYLIFFSLLGYKQVRGHISKAFKTISLSVIYLLVPIFSLFIIENSYS
                     QFSTLSSNSLWNNLIIIGVLYLILVFTTNLRFASLLILSASVFIGISNQLLIDSRGAP
                     LLFYNLFQITDGLNVASSVAININNRMLQSMVFSYILLTFFFFIPKLYLPKLLPSRTF
                     YSSYDFKWPKRFSRILLGYITLITIVPMINKTIVSNANISLNYWRMYVTYGQFGLPLS
                     LASFYEDSKITEPDGYSASNLSEVLEKYSPEPERQTIRPNIIFIQNESQSDFSNLQGL
                     NMEPDPLSNQHALTDNTVHGTLNVSVFGGGTANTEYEVLTSNPISLLSSNLFPYQQII
                     TQERPSFATYLKNKNYDTVALHPQSGNNYNRNAVYPLLGFNKSYFLDSEPAISSLAPL
                     TIDRGWPSDQFLFNGIKELYTQKGDQPLFSFVVTMQGHGGYPSTEEIYPREVSINGST
                     SEYLAETEFLTSMKKTDEAFADLITFFSTYKEPTVIVMYGDHQPSLTQEFYAQFMDEN
                     NPAAKYSTPFVIWSNFDIKERESTTISPNYLVPYLMDILSESDYALPRSPYQQFLSVM
                     QIEAPIITSWGNTDNNGQQIEDISSLSLYQTYLQLEYNSAVDKRPLTDLYE"
     gene            2762..3910
                     /locus_tag="U1087_000655"
     CDS             2762..3910
                     /locus_tag="U1087_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1972 domain-containing protein"
                     /protein_id="HEM4755158.1"
                     /translation="MKHVFIIGSRGLPAKYGGFETFVQQLVSHQQSEKICYHVACLSD
                     TSHHQHSTYLGADCFTINPPKLGPARVIAYDMMAITYALKIIKEQQIERPIFYILGNT
                     IGGFIVPFAKKIHSVGGTLFVNPDGLEWKRAKWAKPVQRYLKFSEKMMVKYADLIIAD
                     NEGIEDYIQFEYSATNTRFIAYGTDLSPTKLTKESEQIRQYFTNWNIKEKEFYLIIGR
                     FVPENNYVIAIKEFMASNTRRDLVIVANHEGSAYFQKLKDETGFISDKRIKFVGTVYD
                     QELLKYLRQECRAYIHGHEVGGTNPSLLEALAQTNENLVLGVDFNCKVALEGVRYWSK
                     ESGSLSQLINQIDENAEAVELGEIAKKHMKDEYTWEKIVQEYEELFLQ"
     gene            3907..4836
                     /locus_tag="U1087_000656"
     CDS             3907..4836
                     /locus_tag="U1087_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM4755159.1"
                     /translation="MKVNILMSTYNGQQFLAEQIRSIQEQTYTDWTLFIRDDGSSDRT
                     REIIKDFVEQDQRIHFIDVETDENLGVIKSFHRLVHYDTADFYFFSDQDDVWLPNKLE
                     VSLKKAQAYPTNLPLMVYMDLKVVNQNLEVMAESMVKSQSHHANTELVQELTENTVTG
                     GVAMINHHLAEMWQVTEDILMHDWYLALLASAFGNLVFIDQPGELYRQHSDNVLGART
                     LSKRLKKWIRPHILFAVYWDLIKNSQKQARHLLQMPLSQSNRELIEAFVTIMDKPMLE
                     RFRILRKYGLRKNKAFHTLVFTTLIITKFAYKE"
     gene            4839..5645
                     /locus_tag="U1087_000657"
     CDS             4839..5645
                     /locus_tag="U1087_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM4755160.1"
                     /translation="MNLLNRENQILLKEMVKTDFKLRYQGSLIGHLWSILKPLLLFTI
                     MYLVFVRFLRFDDGTPHYAVSLLLGMVTWNFFTEATNMGMMSIVSRGDLLRKLNFSKE
                     IIVFSSVAGAAINYAINLMVVFVFAAINGVPFTWSVLIIIPLFFELALLATGIAFILS
                     SLFVRFRDIGPIWEVFLQAGLYATPIIYSLTFILQRGQVTFAKLMMLNPVAQIIQDLR
                     HFIVYSGNTTVSELIENPVIVAIPYILPVVVYLLGITVFRKNAKKFAEIL"
     gene            5645..6859
                     /locus_tag="U1087_000658"
     CDS             5645..6859
                     /locus_tag="U1087_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4755161.1"
                     /translation="MVKNNNIAVKVEHVSKSFKLPTESSQSLRTTLVNLFKGIKGYVE
                     YNVLQDISFEVEKGDFFGIVGRNGSGKSTLLKILSQIYVPERGTVAVDGKLVSFIELG
                     VGFNPELTGKENVYLNGAMLGFTAEEIDAMYDDIVEFAELSEFMNQKLKNYSSGMQVR
                     LAFSVAIKAQGDILILDEVLAVGDEAFQRKCNDYFLERKKSGKTTILVTHDMGAVKKY
                     CNKALLIEKGYVKALGEPDDVANQYSFDNVLASISEVTENEEPLHQSDIVKDLQINLV
                     SKNQIEPDESIEIEFKYTVLEDIETHIAFTFLDLERHFDVYNDNSMDLKTFGKGEKFI
                     RVKCKLPSINQAKLKMAVSVRNSNKQPLLFAKTSDTPAIFISRKFSTDNIAEEDAATG
                     FIQRNSQWELLD"
     gene            6880..8604
                     /locus_tag="U1087_000659"
     CDS             6880..8604
                     /locus_tag="U1087_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnan synthesis protein F"
                     /protein_id="HEM4755162.1"
                     /translation="MSRLLVYVHYNKYNVVSEYIYYQLKSIRSIYSDIVFVSNSHVSK
                     DKVQYLQSERLIDFFIQRDNIGYDFAAWKEGLNQVTFYQYDSVTLMNDTCFGPLWNLE
                     DYYSQFDNDVNVDFWGMTNHLETKIDSVVVPEHLQSYFMVFKKRILQSQAFVGFWSSV
                     SELTDIQDVIKLYESQLTKILLSEGYSYKCVLDTSICCKTLENSNVTLEYPEVILKNN
                     VPFIKIKSFTEYPDRIYSLIHLIRMKTKYPVELIERHLRQIIIPGTSFIPQIRVSQTT
                     ETVLSSTSVLLHIHIESVSIFEEYIEELCKIADRCQLLITLPEADFSNKCIIVERYLF
                     TYQLRGQIIKVTDELHFFETVKNYMGDAKYLAHITVKQTKEIKYSVEDIIDRYQLRKM
                     FFTSFDTVISNFESQSNLAVVIPDLTTNQRYDRKSLRENNPELIRQLNILYESLVRTK
                     KVDFYKVPYIIGEEVSWYWIKTEHFNKIEEQFRNIDFSKEVRSLLVPILFIYSAWDLS
                     NDYAVIENTENVSPILEKISFSSERELRLIIEEKEFLQIGLRRTLKIISVGIVSVFKM
                     IKKSLLKN"
     gene            8637..9896
                     /locus_tag="U1087_000660"
     CDS             8637..9896
                     /locus_tag="U1087_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein"
                     /protein_id="HEM4755163.1"
                     /translation="MKSRIVSPKTIFIWNLLGSISSAAISIFLLLLVTRLLTELEADI
                     FSFAYAVANLFVIIASFQVRDYQATDVSKKFSFSQYLATRLITITIMLLLALSYIFLS
                     KYEFQKSVCIFLICLYRGSDALSDVFQGLFQQNARLDIAGKSLFLRNSIVILTFGIGL
                     FITNNLLLSLIYLVISSYLFVFFFDVPNLFQFTRIIKEEINLKAIKNILSECLPLFIN
                     AFLLVTIYNQPKYALNTFFERGVIGTGVQRDFNILFMPVFSMNILLILFRPMITQLAI
                     YRRAGDYNQFKQYQKRIVKMVVGLAVLVLVGGIVLGIPALNILYGTNLNKYWLSFIIT
                     MLGGIASTFATICDNMLTVLRKQKYLVISFAISCLLSILISNPLVEYYGILGAAIAFV
                     SSMWTWFLISLVIYLKLQKHLNWEVQE"
     gene            9893..11200
                     /locus_tag="U1087_000661"
     CDS             9893..11200
                     /locus_tag="U1087_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2142 domain-containing protein"
                     /protein_id="HEM4755164.1"
                     /translation="MKIEKLFLRLAIPFLLISIFVMPVTKVPDEATHAFMSWNILFDS
                     PTSRDTEAMNELRTTDFAYSKPEIHAVDSTEYSSLFTKIRDFSKDKLSIDFSLKSLMS
                     TPQLIGLVVGKLLYPSYGMMVTIGRLFNTIVYIIGIYYLIKKIKYGKMTLFFVSLLPM
                     MIQQAGSLSYDVVNYLAVVAFFVFYVNLLVDKVLTTRKFIKLILLSLLLYLTKANNIL
                     LLALLFFVDFEFEGVLSKFNSLLKWIQKRRLPILILGFGLVLLVSYIFLHNRGGVVHF
                     VKVMINSLFINNRNDHLNGILTVGIFGYFGWFVTQLPLWLIFIDIFIFTLLLFNDGNL
                     KISKTEGLASLFVLPVQVAIIVAGMYFAWTPTAIGPNAIISQGAQGRYFTPFLVYLFP
                     ACLILKEQVSVSVKQKYLIRLITGTVVINFIMYLFLIVDYYWL"
     gene            11223..12212
                     /locus_tag="U1087_000662"
     CDS             11223..12212
                     /locus_tag="U1087_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 8 protein"
                     /protein_id="HEM4755165.1"
                     /translation="MNILFTLNDAFVPQVAACMGSIMRTLNEDDTCHFYLFSDGISQQ
                     NKENLHQFVTDGGNKLTIVELENLESYFDFEVDTNGWASVVLARLLVDKLLPEEVDRI
                     IYLDGDTLVLENIRELWEVDLEGKVLGMCPEPTASSERRESLNLGTYTYHNAGVLLID
                     LKRWRSKSIGTIIFDYYKEKNGELFANDQDALNGALKEEIKTLSITYNYFNIFDVYPY
                     RTLEKLSSPSTFISKEEFVKIRKQPRIVHFLGEERPWRIGNKHRFREDYVSALNQTPW
                     SGTQFESGWQLYFFCFNLFNMVMKPFPMLRYKIITVLIPVFMKYRKIRLQKGV"
     gene            12215..13198
                     /locus_tag="U1087_000663"
     CDS             12215..13198
                     /locus_tag="U1087_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM4755166.1"
                     /translation="MKFSVIIPAYNVADYLEECVYSVLNQNYEEFEILLVDDGSTDGK
                     TSNICDKLAAKDDRVKVFHQTNGGQSIARNTGIKNASGDYILFLDGDDFWTDVHFLDE
                     INEELHSHEEVVDAVIYPFSYWYGNADIRVRDFPQKLPRHEIITDSVLLVETGALIAP
                     VWNKCVRRELFADSLMFPDGLMYEDGIWCADLLKIITCCCVIENSNYMYRQNRDGSFT
                     NKITQKKVYHAFRGIEENLKNFKQLSHEKQEALLIYLSNSYISILPFVFPYLNNSDIK
                     MFVKKFRYLLKYSQKVELVSFRISGLMTRVLGIYVSTFIQNKLLKIYKSRQ"
     gene            13205..15265
                     /locus_tag="U1087_000664"
     CDS             13205..15265
                     /locus_tag="U1087_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEM4755167.1"
                     /translation="MIGNTVKRWIRNFTTRLFILSGKYKLLFYILELTKNIAKFFWRI
                     PKYIKRTLLALQRDKQRRNNYSDIKNRYLIYTIYEHQSSLQDYKVIFLEALAKISRDV
                     LIVVNGKLPQADINRLAQYGKVLERENEGYDVAAFRHGIIHTGKEALQQYNQLILVND
                     TNIGPFRDLEEVFSEFNSDQLDFWGISMGEEQLDFTGYNPYGKIPKHLQSYFVVIENS
                     LLRYEGFYDYWEKLSDTDSRNKAIGKHETVFAKYFYDRGFKYDALIKDTKDSALYIHP
                     LKLLKQGCPLVKYSAFRNYDREQYFWHGLERESEIPDLMEYIAKETDYPIEVVSSILE
                     DFKTRENQSYILIIDGVENIIPQCTRYRVLNKAEQLRELGYTVRVINNSLVQLQDAQF
                     ASHIIIYRAPFNDMLKEICRAAHIKNRPVYFDIDDLVFDTKFTDELEFTQGLSKREKK
                     GYDTSVLAYKKMLSLCDYAITSTSKLKDELEQYKNKVILNRNVMSKELVERSLQVKKN
                     SNDNKVKIGYFSGSITHNENFDLISQALLHLLQKYPQVELHIVGYLDIPKPFQKFKKQ
                     IVSHEYVDWRKLPILISQVDINLAPLVTTTFNEAKSEIKWIEAAAVKVVTVASNLGAF
                     EEMIQDGVTGVLADDNEWESKLERLILEQDLRAQIAENAFEFVMNHCTTANRINDFLK
                     EELV"
     gene            15265..16518
                     /locus_tag="U1087_000665"
     CDS             15265..16518
                     /locus_tag="U1087_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEM4755168.1"
                     /translation="MKRILFISPTTSMDNGAEKSIYYLMKYLIQLGHTVINVTHAIGG
                     EPQDKHEQLYKMIGVKNYYLPTIKWWWPDAPGGEILNREEATSYYRQNVQDIAEIIEQ
                     NEIDLVISNTVNVFQGAIAASCQKVPHFWLIHEFPKNEFAYYADKIDFIEEYSSELFS
                     VTGELNNFLTPLFNKKVHSFISYTEQETKVLKKGNQVRIVSVGRLTEGKNQLELIKAY
                     KTLNRLDIELVFIGGWDSKYKAICDEYIHENKLQKNVKFLGNLDNPWEEVTDRDICVF
                     PSSMETFGLVYVEAILRGLPVILSDNLGHLTAFEIFSAGQIYKLGDIEELVTKLEQVI
                     ESFRNFSDRARLDVERLRTLYTPEVAYKEILDGINHLEYTGHQNTNLSHIKGLLTLNM
                     RPTRLERYARLISNMATKIRHKLRL"
     gene            16623..17339
                     /locus_tag="U1087_000666"
     CDS             16623..17339
                     /locus_tag="U1087_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015604473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM4755169.1"
                     /translation="MKVLMIIPAYNEEESILQTVQGIIDYRNSVNFQLDYVVINDGST
                     DHTKEILIQNKLNAVHLVQNLGIGGAVQTGYKYALDNDYDVAVQFDGDGQHDIRSLNS
                     LIQPILVGQADMVIGSRFVGDTLSEFQTSFMRRFGIGVISNMIKLTTGNRIWDTTSGY
                     RLGNRKVIAQFAKRYPIKYPEPESTVHLLKQNFQVVEAPANMFERAGGVSSITPLKSI
                     RYMVEVCSSILIASLMKEGE"
     gene            17339..17695
                     /locus_tag="U1087_000667"
     CDS             17339..17695
                     /locus_tag="U1087_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2304 domain-containing protein"
                     /protein_id="HEM4755170.1"
                     /translation="MTIQALAMFLASLGFLYFIFRNINKNKILFEHAFMWIVIGFGLI
                     VFALFDVIPIKLAYLFGFGLTSNFLLSVAIFVLLVIGFLHSMALSQQKQQIKNLIQEV
                     SMAKKRIAELEEHHAE"
     gene            17685..18473
                     /locus_tag="U1087_000668"
     CDS             17685..18473
                     /locus_tag="U1087_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002886818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEM4755171.1"
                     /translation="MQNNHTFVICAYGDSKYLEECIHSLKQQTLQSQLILYTSTPSEY
                     IEQICQKNAIVMHTAQGGGIGKDWNLALSFVTTPYATIAHQDDIYLPDYCEKIMSQMT
                     EETLIAYSDYQEVKEGVAIPLTSNLKIKQLMLRTMAMFPKWKFWRNRVLAFGNPISCP
                     AVTYNLKKLNDFKFNEEMKVSLDWFAWYQIAQKNGSFTFVDESLMYHRIHEESETTNS
                     IENNIRTQEDYEMYLLFWPEFIAKFLLRYYVKSQETNGGNNGEK"
BASE COUNT         6159 a         2590 c         3632 g         6132 t
ORIGIN      
        1 actcatatag atctgttaga ggtcgtttat caacggcact attgtattct agttgtaagt
       61 aggtttggta aagtgatagg ctggatatgt cttcaatttg ttggccatta ttatcggtat
      121 ttccccagct agtaatgata ggtgcttcga tttgcataac actcaaaaat tgttggtaag
      181 gtgatcgagg aagggcatag tcggattcgg ataaaatatc catcaaatat ggaacgagat
      241 agtttgggct aatagttgta gattcacgtt ccttaatatc aaaattagac caaatcacaa
      301 aaggggtaga atatttagcg gcaggattat tttcatccat aaattgtgcg taaaattctt
      361 gagtcaaact aggttggtga tcgccgtaca tgacgatgac cgtaggctct ttgtaagtgc
      421 taaagaaagt aattaaatca gcaaatgctt cgtccgtctt cttcatgctg gtcaaaaatt
      481 ctgtttcagc taagtattca gatgttgaac cattaatgct gacttcgcga ggataaattt
      541 cttccgtact tggatagcct ccatgtcctt gcatggtaac aacaaagcta aatagaggct
      601 ggtctccttt ttgggtataa agttctttta ttccgttgaa caagaattga tcagatggcc
      661 agccacgatc gattgttagt ggtgctaagc tactaatagc aggttccgaa tctaaaaaat
      721 aagatttatt aaaccctagt agaggataca ctgcattgcg gttgtaatta tttccggatt
      781 gaggatgtag agctacggtg tcgtaatttt tattttttag ataagttgcg aaacttggac
      841 gttcttgtgt gataatctgc tgatatggga ataaattaga agataataaa ctgattgggt
      901 tacttgtcag aacttcatac tctgtattag ctgttccgcc tccaaataca gaaacattta
      961 atgtaccgtg aacagtatta tctgttaaag catgttggtt tgatagcgga tcaggctcca
     1021 tatttaagcc ctgtaagttt gaaaaatcac tctgtgattc attctgtata aagataatat
     1081 taggtctgat tgtttgtctt tctggttcag gagagtattt ttcaagaact tcactaagat
     1141 tggaagctga atatccatca ggttcagtta ttttactatc ttcatagaaa gaggcgagcg
     1201 agagtggtag cccaaattga ccgtaggtaa cgtacattct ccagtaattt aatgatatat
     1261 ttgcattaga gacgatagtt ttattaatca ttggaacgat tgttattaaa gttatatagc
     1321 ccagtaaaat tctgctgaaa cgtttcggcc acttgaaatc ataactagaa taaaacgttc
     1381 tagaaggtag aagttttggt aaatataatt tagggataaa gaaaaagaag gtcaataaaa
     1441 tataagaaaa taccatgctt tgtagcattc gattgttgat attaattgct acgctagaag
     1501 ctacatttaa tccatctgtg atttgaaaaa gattataaaa caatagagga gcaccacggc
     1561 tgtcaatcaa aagttggtta cttataccaa taaatactga agcagataga attaataggc
     1621 tggcaaatcg tagattagtt gtaaagacca gtattaggta gaggactccg ataatgatta
     1681 gattgttcca aagactattg gaggaaagag tagagaattg tgagtagcta ttttcaataa
     1741 taaataatga aaaaatggga actagaagat aaatcactga tagactaatc gttttgaagg
     1801 ctttagagat atgacctcgg acttgtttgt atcccaaaag actaaaaaat ataaggtaag
     1861 tcagtgcaac taatagctgt tgagtttcca ttttattaaa actggaatta aacagtacta
     1921 gttcgttgcg atataaacgt gggaatgtaa aagtagtgaa tatatattga gtgattaata
     1981 atattgttaa gatgctgata tgtcttctct tgattctcca tgttgatcca tttaagataa
     2041 agcatgatag acctaaagca aggactatta agtggagata ccaaaattga ttatctttag
     2101 ttatccgtaa agtataggga agttcaataa aggctaaatt tttatattta tctccagttg
     2161 atgtgtcaat agattcaacc aactgtccac caactttaat ttttacaata gtcggatttt
     2221 cactaacaaa gtattcaaat gataaggttc ttacagaaga ggaagattta attatgagtg
     2281 aattttcctc acctagagaa gagaaattag ggattaaatc agcatcattg attccccatt
     2341 ggttttctat aatttctgat gaatgaatat agcgtccatt tatttggatg ctgtcgatta
     2401 cttggtttgg ttgttctgcg atgatttcta tcattccatc attttttgta gaacctaatt
     2461 cgttttgaat gagatgtgca tagagaaaaa aacttccaat caatccgatg gagattagta
     2521 tgtgaataag ctgtttaatt aatttcatat ttattaacaa ttctaagttt tatattttta
     2581 tgtaaaagcc agtacatatt atatcaaatt tttctcatta actcaaaatt tgtttttatc
     2641 tatactgtgg agtcagaggc gtagaaaaag aaaaggcttt atagccaaac taggacagaa
     2701 ttaggaaaaa aaactaaaaa atggtataat gaaaagaact gcaatttgat ggagaggatt
     2761 catgaaacac gtttttatta tcggtagtcg tggactgcca gcaaaatatg gtggctttga
     2821 gacctttgtc caacaattgg tcagtcacca gcaatctgag aagatttgtt atcatgtggc
     2881 ttgtttatcg gatacaagtc atcaccaaca ttcgacctac ctgggtgcag attgcttcac
     2941 cattaatcca cccaaacttg gaccagctcg tgtgattgct tatgatatga tggcgatcac
     3001 ttatgccctt aaaatcatta aggaacagca gatagagcga ccaattttct atatcttggg
     3061 aaataccata ggtggcttca tagtaccttt tgcgaaaaag attcactctg ttggaggtac
     3121 cttgtttgtc aatccagacg gtttggaatg gaaacgggcc aagtgggcta agccagtcca
     3181 aaggtatcta aaattttctg aaaaaatgat ggtcaaatat gctgatttga ttattgctga
     3241 taatgaggga attgaggatt atattcaatt tgaatactcg gctaccaata cacgcttcat
     3301 tgcctatggt acagatttaa gtccgactaa gttaacaaaa gaatctgagc aaattcgcca
     3361 atattttaca aattggaaca ttaaagagaa agaattttat ttgattatcg gtcgttttgt
     3421 acctgagaat aactatgtga tagcaattaa ggagtttatg gcaagcaaca cgagacgtga
     3481 tttagtcatc gttgcaaacc atgaaggctc tgcctatttt caaaaattga aagatgagac
     3541 aggctttata tccgataaga ggattaagtt tgtaggaaca gtatatgacc aagaactact
     3601 taagtatctg cgccaagaat gtcgagctta tattcatgga catgaagttg gaggaaccaa
     3661 tcctagtctc ctagaagcgc tggcgcaaac caatgaaaat ttggttttag gtgttgattt
     3721 taactgcaaa gttgccttag aaggtgttcg gtattggagt aaggagtcag gtagcctgag
     3781 tcaattaatt aaccaaattg atgagaatgc tgaagcggtg gaattaggag aaattgcgaa
     3841 aaaacacatg aaggatgaat acacctggga aaaaatcgtc caagagtacg aggaattatt
     3901 tttacaatga aagtaaacat actcatgtcg acctacaatg gtcaacagtt cttagctgag
     3961 caaattcgtt ctatccaaga acagacttac acagactgga cactatttat tcgtgatgat
     4021 ggttccagtg atcgaactag agagattatt aaagattttg ttgaacaaga tcagcgaatt
     4081 cacttcatag atgttgagac agacgaaaat ctcggtgtca tcaaaagttt tcataggcta
     4141 gttcattatg atactgctga tttctatttt ttcagtgacc aagatgatgt ttggctgcca
     4201 aataaactgg aagttagcct gaaaaaagca caagcctatc caacaaattt gccattgatg
     4261 gtttatatgg acctcaaagt tgtcaatcaa aatctagagg ttatggcaga aagcatggta
     4321 aaatctcaat ctcatcatgc caatacggaa ttggtgcaag agttgactga gaatactgtg
     4381 actggcggtg tcgccatgat taatcatcat cttgctgaaa tgtggcaagt aactgaggat
     4441 attttgatgc atgattggta tctggctctg cttgcgtcag cctttggaaa tttggtattt
     4501 attgatcaac caggggaact gtaccgccag cattctgata atgttttagg ggctcgaaca
     4561 ctctcaaaac gcttaaaaaa atggattcgc cctcatattt tatttgctgt ctattgggat
     4621 ttgataaaaa atagtcaaaa acaagcccga cacttactac aaatgcctct atctcagtca
     4681 aatagagaat taattgaagc atttgtaacc attatggata aaccaatgct tgaacgattc
     4741 aggattttga gaaaatatgg attgaggaaa aataaggctt tccatacatt ggtatttaca
     4801 acactcatta ttacaaaatt tgcttataag gaatagttat gaacttattg aatagagaaa
     4861 accagattct tttgaaagaa atggtaaaaa ctgattttaa actgcgttat caaggttctt
     4921 tgattggtca cctgtggtca atcctaaaac cattgttact ttttacaatt atgtatttag
     4981 tctttgtacg ttttttgcgt tttgatgatg gaactccaca ttatgcagta agcttactgc
     5041 ttggtatggt tacttggaac ttttttactg aagcaaccaa catgggaatg atgtccattg
     5101 tttctcgtgg agatttgttg cgtaaattga atttttcgaa agaaattatt gtcttttctt
     5161 cagttgcagg agctgcaatt aattacgcca ttaacttaat ggttgtgttt gtatttgctg
     5221 ctattaacgg ggttcccttt acttggtccg ttttaattat aatcccattg ttttttgaat
     5281 tggcattact agcaacaggt atagctttca ttctatcttc tttatttgta agatttagag
     5341 atattggtcc aatttgggaa gtgttcttac aggctggatt gtatgcaaca ccaattattt
     5401 attcattgac atttatttta cagcgtgggc aagtaacatt tgctaagttg atgatgttga
     5461 accctgttgc acaaattatt caagacttga gacattttat tgtttattct gggaatacta
     5521 cagttagtga attgattgaa aatcctgtta ttgtggcaat tccgtatatt cttccagtcg
     5581 ttgtttacct attgggtata actgtgttta gaaaaaatgc caaaaagttt gcggagattt
     5641 tgtaatggta aaaaataata atattgctgt aaaagtagaa catgttagca agagttttaa
     5701 acttccaacg gagagtagtc agagtctaag aactacttta gtcaatttat ttaaagggat
     5761 taaaggctac gtagagtata atgttttgca ggatatcagt ttcgaagttg aaaaagggga
     5821 cttttttgga attgttggtc gcaatggatc tggtaagtca acactgttaa aaattttatc
     5881 tcaaatatat gttcctgaaa gaggaactgt agctgtggat ggtaaattag tttcttttat
     5941 tgaacttggt gttggtttta atcctgagct aactggtaag gaaaatgtat acctaaatgg
     6001 tgcgatgtta ggattcactg cagaagaaat tgatgcaatg tatgatgata ttgttgaatt
     6061 tgcggaatta agtgaattta tgaatcaaaa gctgaaaaat tattctagtg gaatgcaggt
     6121 acgtttagcc ttttcagttg ccattaaagc gcagggagat attctgatac ttgatgaggt
     6181 tctcgcagtg ggcgatgagg cctttcagcg taaatgtaat gattatttcc tagagcgtaa
     6241 aaaaagtgga aaaacgacca ttcttgtcac ccatgatatg ggagctgtga aaaagtattg
     6301 taataaagct cttctaatag agaaaggata cgtcaaggca ttaggagaac ctgatgatgt
     6361 agctaatcaa tacagttttg ataatgtgct tgcctcaata agcgaagtta cagaaaacga
     6421 agaaccactg catcagagtg atattgtaaa agatttgcag attaacctag tctcaaaaaa
     6481 tcaaattgaa cctgatgaat caattgaaat cgagtttaaa tatacggttt tagaagatat
     6541 tgaaacacat attgcattta catttttaga tttagaacgt cattttgatg tatataacga
     6601 caattctatg gatttaaaaa catttggcaa aggtgagaag tttatccgag tgaaatgtaa
     6661 gctaccttca attaatcagg ctaaattaaa aatggcggtg tcagtacgaa atagtaataa
     6721 gcagccgtta ttatttgcaa agacttctga cacaccagct atttttatta gtaggaagtt
     6781 tagcactgat aatattgcag aggaagacgc agcaaccggg tttattcaga gaaatagcca
     6841 atgggagctg ctagattaat aaaatataac ggaggcagaa tgtcgcgttt gttggtatat
     6901 gttcactata ataaatataa tgttgtcagt gaatatattt attatcaatt aaagtcgata
     6961 cgaagtattt attcagacat agtttttgtt tctaacagcc atgtttcaaa ggacaaagta
     7021 caatatttac agtcggaacg actgattgat ttttttatcc aaagagataa tattggttat
     7081 gattttgcgg catggaaaga agggctgaat caagtaacat tttatcaata tgattcggta
     7141 actctgatga atgatacatg tttcggaccc ctctggaacc tagaggatta ttatagtcaa
     7201 tttgacaatg atgttaatgt tgatttttgg gggatgacca atcacttaga gacaaaaata
     7261 gatagtgtag ttgtccctga acatttacag tcatatttta tggtatttaa aaaacgaatc
     7321 ttgcagagtc aagcattcgt tggtttttgg tcatctgtaa gtgagttaac agatatacaa
     7381 gatgttataa aattatatga gagccaattg acgaaaatac ttttatcaga gggctatagc
     7441 tataagtgtg tattagatac gtccatttgt tgtaagaccc ttgaaaatag taacgtaaca
     7501 ctagaatatc cagaagttat acttaaaaat aatgttccat tcataaaaat aaagagtttt
     7561 actgaatatc cagatagaat atactcttta atacatctta ttaggatgaa aacgaaatac
     7621 ccagttgaat taatcgagag gcatttgaga cagataatta ttccgggtac gagttttatt
     7681 cctcaaatac gggtttcgca aacgacggaa accgttctat cttcgacgtc ggtacttctt
     7741 catattcaca tagaatcagt atctattttt gaagagtata ttgaagagtt atgcaaaata
     7801 gccgataggt gccagttact aataacattg ccagaagctg atttttcaaa taagtgtatt
     7861 atagttgaga gatatttgtt cacctaccaa ttgagaggac agattataaa agtcacagat
     7921 gaattgcatt tttttgaaac agtaaaaaac tatatgggag atgccaaata tcttgctcat
     7981 ataactgtca aacaaacaaa ggaaataaaa tattctgtag aggatattat tgacaggtat
     8041 cagttgagga aaatgttttt tacatcattt gatacagtga tttctaattt tgaatcacaa
     8101 tctaatttgg ctgtagttat tccagactta acaactaatc aaagatatga tagaaaaagt
     8161 cttcgagaga acaatccaga acttattcgt caattaaaca tactttatga atcacttgtg
     8221 agaactaaga aagttgattt ttataaagtg ccttatataa ttggagaaga agtaagttgg
     8281 tattggataa aaacagaaca ctttaataag attgaggaac aatttagaaa cattgatttt
     8341 tcaaaagaag ttagatcatt gctagttcca atattattta tttatagcgc gtgggattta
     8401 tcaaatgatt atgcagtgat cgagaatact gaaaatgtga gtccaatatt ggaaaagatt
     8461 agtttttcca gcgaaaggga attgcgttta attattgaag aaaaggaatt tttacaaatt
     8521 ggactgagaa ggacactaaa gataatttca gttggaattg taagcgtgtt taagatgata
     8581 aagaaatctc tattaaaaaa ttagggataa cggatgacaa acaaggggaa gatagtgtga
     8641 agagcagaat agtatcacca aaaacaatat ttatttggaa tttattagga agtatttcct
     8701 cagcagcaat atcaatattt ttattgttac tagtaacacg tttgttgacg gaattagagg
     8761 ctgatatttt tagttttgct tatgcagtag caaatctttt tgtaatcatt gctagttttc
     8821 aggtaagaga ttatcaagcg acggatgttt cgaaaaagtt ttcgtttagc cagtatcttg
     8881 caacaaggct tataacaatc actattatgc tattacttgc cttaagctat atttttctgt
     8941 ctaaatatga atttcaaaaa tctgtttgta ttttcctaat atgtttgtat cgcggaagtg
     9001 atgctctgtc ggacgttttt caaggattgt tccaacaaaa tgctcggcta gatattgcag
     9061 gtaaatcact ttttttgaga aactctattg tgattttgac atttggaatt ggtttgttta
     9121 taaccaataa cctgctactc tcattaatct atctagtaat tagttcatat ttatttgttt
     9181 tcttttttga tgttccgaat ttgtttcaat ttacgaggat tatcaaagaa gaaattaatt
     9241 tgaaagccat taaaaatata ttgtcagaat gcttgccgtt atttattaat gcatttttac
     9301 ttgttactat ctataatcaa cctaaatatg ctctcaatac tttttttgag agaggtgtta
     9361 taggaacagg tgttcaaaga gattttaata ttttatttat gcctgttttt tcaatgaata
     9421 ttttgttgat tttgtttaga cccatgataa ctcagttggc tatatataga agagctgggg
     9481 actataatca atttaaacaa tatcagaagc gtatcgttaa aatggttgtc ggattagctg
     9541 tgttagtttt ggttggggga atagtgttgg ggattccagc attaaatatt ctctacggaa
     9601 cgaatcttaa taaatattgg ctcagcttta ttataacaat gcttggggga attgcgagta
     9661 cctttgcaac catttgtgat aacatgctta ctgttttgag gaagcaaaag tatctcgtaa
     9721 tttcatttgc aatttcttgt ttattgtcca tattgatttc taatccactg gtagaatatt
     9781 atggaatatt gggggcagct attgcttttg ttagttcgat gtggacttgg tttttaattt
     9841 ctttagtaat atatctaaaa ttgcaaaaac atttgaattg ggaagtacaa gaatgaagat
     9901 agaaaaatta tttttaaggt tagcaatccc ctttttgtta atttcaatat ttgttatgcc
     9961 tgtgacaaag gttcctgatg aagcaaccca tgcttttatg tcgtggaata tattatttga
    10021 ttctccgaca agtagagata ctgaggcaat gaatgaatta cggacaacag attttgcata
    10081 ttcaaaaccg gagattcatg cagttgattc tacagaatat tcaagccttt ttaccaaaat
    10141 tcgtgatttt tcaaaggaca aattatctat cgatttttct ctgaaatcgt taatgagtac
    10201 acctcagcta attggtctag ttgtaggaaa attgctttat ccgtcatatg gtatgatggt
    10261 cactataggg cgccttttta atacaatagt ctatattata ggtatctact atttgataaa
    10321 aaaaataaag tatggaaaga tgaccctgtt ttttgtctca cttttaccta tgatgattca
    10381 gcaggctggc tcactgtctt atgatgtggt gaactatctg gctgttgttg cattttttgt
    10441 tttttatgtt aacttattgg tagacaaggt actgaccacc aggaaattta tcaaattaat
    10501 attactatcc ttgctactat atttaacaaa agcaaataat attttacttt tggcactatt
    10561 gttttttgtt gattttgaat ttgaaggcgt cttatctaag tttaattctc ttttaaaatg
    10621 gattcaaaag agaagattac caattcttat tttagggttt ggactagttt tacttgttag
    10681 ctatatattc ctacataaca gaggtggtgt cgtgcacttt gtgaaagtga tgataaacag
    10741 tttatttatc aataacagaa atgatcatct taatggtatt ttaacagttg gtatttttgg
    10801 ttattttggc tggtttgtca ctcaactacc tctctggtta attttcatag atattttcat
    10861 ttttacgtta ttattattta atgatggaaa tttaaagata agtaaaacag aaggtcttgc
    10921 ttcgttattt gtactccctg ttcaggtagc tatcattgta gcgggcatgt attttgcatg
    10981 gacaccgaca gctattggac caaatgcaat aatttctcag ggggcacaag gaagatactt
    11041 tactccgttt ttagtctatc tatttccggc atgtttaata ttaaaagagc aggtaagtgt
    11101 atcggtaaaa cagaagtatt tgatacggtt gatcactggc acagtagtca ttaactttat
    11161 catgtatcta tttttgatag tggattatta ttggttgtaa gaagatagtg gaagagggaa
    11221 acgtgaatat attatttaca ttgaatgatg cttttgttcc gcaagtagcg gcttgtatgg
    11281 gctcaatcat gcgaacatta aacgaagacg atacatgcca tttttatctt ttctcagatg
    11341 gtataagtca acagaataaa gaaaaccttc atcaatttgt taccgacgga ggaaataaat
    11401 tgacaatcgt tgaattggaa aacttggaat catattttga ttttgaagtt gacacaaatg
    11461 gttgggcttc ggttgtactt gcaagattac ttgtagataa attactgccc gaagaagttg
    11521 atagaatcat ctatttagat ggagatacct tagttttaga aaatattcgg gagctatggg
    11581 aagtagattt ggaggggaaa gtccttggaa tgtgcccaga accgacagcg tcgtctgaga
    11641 gaagagaaag cttaaatttg ggtacgtata catatcataa tgcgggagtt cttctaatcg
    11701 atttgaaacg gtggcgttca aaaagtatag gaacaattat ttttgattat tataaagaaa
    11761 aaaatggaga gctttttgct aatgatcaag atgcactgaa tggagcattg aaagaagaga
    11821 taaaaacact ctcaatcact tataattatt ttaatatttt tgatgtttat ccatatcgta
    11881 cattggaaaa attaagtagt ccttcaacgt ttatttcaaa agaagaattt gtaaaaattc
    11941 gtaagcaacc acgtattgtt cattttttag gcgaagaacg cccatggaga atcggaaata
    12001 aacatcgatt tagagaggac tatgtttctg cattaaatca gacgccatgg agtggtactc
    12061 aatttgagag tggttggcag ctttactttt tctgctttaa tctttttaac atggttatga
    12121 agccttttcc tatgttgcgt tataaaatta ttacagtctt aattcctgta ttcatgaaat
    12181 ataggaaaat tagattacaa aaaggagtct aggtgtgaag ttttccgtta ttatcccagc
    12241 gtacaatgtt gctgattatc tggaagaatg tgtgtatagt gtactgaatc agaattatga
    12301 agaatttgaa atattgttgg tagatgacgg ttctacagat ggtaaaacct ccaatatatg
    12361 cgataaatta gcagctaaag atgatagggt gaaggtattt catcaaacta atggtgggca
    12421 atcaattgcg agaaatacgg gaataaaaaa tgctagtggt gattatattt tattcctaga
    12481 tggtgatgat ttttggactg atgtgcattt tttagatgaa atcaatgaag aactacattc
    12541 tcacgaggaa gtggtagatg cagtaattta tccattttca tactggtatg gtaatgctga
    12601 tataagagtt cgtgatttcc ctcaaaaatt acctagacat gaaattatta ctgattctgt
    12661 tctacttgta gaaacaggcg cattgattgc tcctgtttgg aacaagtgtg ttcgcagaga
    12721 actatttgca gattctttga tgtttccaga tgggttaatg tacgaagatg gtatttggtg
    12781 tgcagaccta ttaaaaataa taacttgttg ttgtgtcatt gaaaattcta attatatgta
    12841 tagacaaaat agagatggaa gttttactaa caaaattaca caaaaaaaag tctatcatgc
    12901 ctttagagga attgaagaaa atttaaagaa ttttaaacaa ctatcgcatg agaaacaaga
    12961 agcacttttg atttatttat caaattctta tatttccatc ttgccatttg tatttccata
    13021 tctgaataat tctgatataa aaatgtttgt gaaaaaattt agatatttgc taaaatattc
    13081 acagaaggta gaacttgttt cgtttagaat ctcaggttta atgaccagag ttctggggat
    13141 atatgtatca acatttattc aaaacaaact tttgaaaatt tataaaagta gacaataata
    13201 gaaagtgatt ggtaacactg tgaaaaggtg gattagaaat ttcacaacgc gattatttat
    13261 cttatcaggt aaatacaagc tattgtttta tatattagag cttaccaaaa atattgcaaa
    13321 gtttttctgg agaattccaa aatatataaa gcgaactcta ctagctttgc aacgtgataa
    13381 acaacgtaga aataattatt cagatatcaa aaatcgttac ttgatttaca caatttatga
    13441 acatcaatcg tctttacagg actataaagt aattttttta gaggcattgg ctaaaatttc
    13501 tcgagatgtt ttaattgttg taaatggtaa acttccacag gctgatataa atcgtttagc
    13561 acaatatggt aaggttttgg aaagagaaaa tgaggggtat gacgttgcgg ctttccgaca
    13621 tgggataata catactggaa aagaggcgtt acaacagtat aatcagctca tcttggttaa
    13681 tgatacgaat attggtcctt ttagagattt agaagaggtt ttctctgagt ttaattccga
    13741 tcagctagac ttttggggaa tttccatggg tgaggagcaa ctagacttta ctggttataa
    13801 cccttatggt aaaattccta agcacttaca atcatatttt gttgttattg aaaatagctt
    13861 gcttaggtat gaaggatttt atgattattg ggaaaagctc tctgatacgg attctcgtaa
    13921 taaggcaatt gggaaacatg aaactgtgtt tgcaaaatat ttttatgatc gaggctttaa
    13981 gtacgatgca ttgattaaag acacgaaaga tagtgcattg tatattcatc cgcttaaatt
    14041 attaaaacaa ggttgtccat tagttaagta ttcggccttt agaaattatg acagagaaca
    14101 atatttttgg catggtttag aaagagaatc tgagattccg gatttgatgg agtatattgc
    14161 taaggaaaca gattatccga ttgaagtggt gtcttctata ttagaagatt ttaaaactag
    14221 agaaaatcaa tcttatattt tgattattga tggtgtcgaa aatattattc cacaatgtac
    14281 acgttatcgt gtgttaaata aggctgagca attgcgagaa cttggttata cagttcgagt
    14341 gataaataat tctcttgtac aacttcagga tgcacagttt gctagtcata ttattattta
    14401 tcgtgctcca ttcaacgata tgctgaaaga aatatgtagg gcagcacaca taaagaacag
    14461 acctgtttat tttgatattg atgatttggt ttttgataca aaatttacag atgaacttga
    14521 atttacccaa ggcttgagca agagagagaa aaagggctat gatacaagtg tcttggctta
    14581 caaaaaaatg ctttctctct gcgattatgc tatcacatcg acttcgaaat tgaaagacga
    14641 acttgaacaa tataaaaaca aggttatctt gaatcgcaac gtcatgtcta aagaattagt
    14701 tgagcgtagt ttacaagtta agaaaaattc gaacgacaat aaagttaaaa taggatattt
    14761 ctcagggtca attacacaca acgaaaattt tgatttaatt agtcaagcat tgctacacct
    14821 acttcaaaag tacccgcaag tggaattaca tatagtagga tatttagaca ttccgaaacc
    14881 attccaaaaa ttcaaaaaac agattgtgag tcatgagtat gttgattgga gaaagcttcc
    14941 aattttaatt tcacaagttg atattaactt ggcgccgctt gtaaccacaa cctttaatga
    15001 agcaaagtcg gaaattaaat ggatagaagc ggcagcagtt aaagttgtga cagtcgcaag
    15061 taatcttgga gcatttgaag agatgattca agatggagtg actggagttc tagcagatga
    15121 taacgaatgg gaaagtaaat tggagagatt gattcttgaa caagacttga gagcacaaat
    15181 agcagaaaat gcttttgagt ttgtaatgaa tcattgcact acagcaaata gaattaatga
    15241 ttttttgaaa gaagagttag tctaatgaaa cgtattttgt ttatttctcc tacgactagt
    15301 atggataatg gtgcggagaa gtctatttat tatctaatga agtaccttat tcaactggga
    15361 cacacagtta taaatgttac tcatgcaata ggaggggaac cacaagataa gcatgagcaa
    15421 ctttataaaa tgataggggt taagaattac tatttgccaa ctattaagtg gtggtggccg
    15481 gatgcaccag gtggagaaat ccttaataga gaagaggcta caagctacta tcgccagaat
    15541 gttcaagaca tagctgaaat tattgagcaa aatgagatag acttggttat ttcaaatact
    15601 gttaatgttt ttcaaggagc aattgctgcc tcatgtcaaa aggttcctca tttctggcta
    15661 attcatgaat ttcctaaaaa tgagtttgct tattatgctg ataaaattga cttcatagaa
    15721 gagtattctt cagaattatt tagtgtgact ggagagttaa ataatttttt aacaccacta
    15781 tttaataaga aagtccattc gtttatttct tatactgagc aagaaacaaa agttttaaaa
    15841 aaaggcaatc aagttagaat tgtttctgtt ggtcgattaa cagaaggaaa aaatcaatta
    15901 gaacttataa aagcatataa gacactaaat agattagata ttgaattggt ttttattgga
    15961 ggatgggata gtaaatataa agctatttgt gatgaatata tccatgaaaa taaattacag
    16021 aaaaatgtta aatttttagg taacttagat aatccttggg aagaagtaac tgatagagat
    16081 atctgtgttt tcccttcatc tatggaaact tttggcttag tctatgttga agcaatctta
    16141 agagggcttc cagtaattct atcagataat ttaggacatt tgacggcatt tgaaatattc
    16201 tcagcaggtc aaatttataa attgggcgat atagaagagt tggtgactaa gttagagcaa
    16261 gtgattgaat cctttagaaa tttttcagat agggctcggc ttgatgtgga acgtttacgt
    16321 actctatata caccggaagt tgcctataaa gaaatactgg acggcatcaa tcacttagaa
    16381 tatactggac accaaaatac aaatttaagt cacataaaag ggttgctgac tttaaatatg
    16441 cgtccaacaa gattggagcg ttatgcaaga ttgattagca atatggcgac aaaaatcaga
    16501 cataaacttc gactttgatg gataatagga tatctatgtt aaaatatgta ttattatagt
    16561 ttcttcaaat gagtaagtag aatctaaaaa gttatataga attctagttt tagagagaaa
    16621 aaatgaaagt attaatgatt atccctgcct acaatgaaga ggaaagtatc cttcaaactg
    16681 ttcagggaat tatagattat agaaatagtg tgaatttcca attggattat gttgtcatta
    16741 atgatggctc aacagatcac acgaaagaaa ttttgattca aaataaatta aatgctgttc
    16801 atctagtaca aaatttaggt attggtggag ctgttcagac gggatataaa tatgccttgg
    16861 acaatgacta tgacgtagca gttcaatttg atggtgatgg tcagcatgac attcgttcat
    16921 taaatagctt aattcagcca atcttagttg gtcaggctga tatggtgatt ggctcacgct
    16981 ttgttggtga tactttgtcg gaatttcaaa ctagctttat gaggcgtttt ggaataggtg
    17041 ttatttcaaa tatgattaaa ttaacaactg gaaaccgaat ttgggatact acatcaggtt
    17101 atcgtttggg aaatagaaaa gtgattgcac aatttgcaaa acgataccca attaaatatc
    17161 cggaaccgga atcaactgtt catttactaa agcaaaattt ccaagtagta gaagcaccgg
    17221 caaatatgtt tgaaagagcg ggaggggttt catccataac acctctaaaa tcaattcgtt
    17281 atatggttga ggtttgttca tcaatcttga ttgcatcatt aatgaaggag ggagaataat
    17341 gaccatacaa gcattagcta tgtttcttgc ctcactaggt tttttgtatt ttatttttag
    17401 gaatattaat aaaaataaga tcttattcga acatgccttt atgtggattg ttattggctt
    17461 cggactgatt gtttttgcgc tctttgatgt tattcctatt aaattggctt acttattcgg
    17521 gtttggtctg acttccaatt tcttgttatc tgtggcaatt tttgttctct tggtgattgg
    17581 atttttgcat agtatggctt tatctcaaca aaagcagcaa attaaaaatt taattcagga
    17641 agtatcaatg gctaaaaaaa gaattgctga gttggaggag catcatgcag aataaccata
    17701 catttgttat ctgtgcttat ggagatagta agtatctaga agaatgcatc cattcgttaa
    17761 agcagcaaac acttcaatca caactcatcc tatacactag tactccaagt gaatatatag
    17821 aacaaatttg ccaaaagaat gcaatcgtaa tgcataccgc acaaggagga ggtattggaa
    17881 aagattggaa tttagcactc tcttttgtaa caacccctta tgctacaatt gctcatcaag
    17941 atgatattta tttaccagac tattgtgaaa aaataatgtc tcagatgaca gaggaaacgt
    18001 tgattgctta ttcagattac caggaagtta aggaaggtgt ggctattccc ttaacttcaa
    18061 atttgaaaat caagcaactc atgttacgga caatggccat gtttcccaaa tggaagtttt
    18121 ggcggaatag ggttttagcc tttggtaatc caatttcttg tccagctgtg acctataatt
    18181 tgaagaaact gaatgatttc aagtttaatg aagaaatgaa agtttctctt gattggtttg
    18241 cttggtatca gattgcacaa aaaaatggga gctttacctt tgtagatgag agtttgatgt
    18301 atcatcgtat ccatgaggaa tctgagacga caaatagcat tgaaaacaat attcgtacac
    18361 aagaagacta tgaaatgtat ttgttgttct ggccagagtt tattgccaaa tttctcttga
    18421 gatactatgt taagagtcaa gaaacgaatg gaggaaacaa tggggagaaa taaaatagaa
    18481 ggaaatacac gaactcgcaa acgaacacgt tgt
//
LOCUS       DASFRC010000028        18112 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.028, whole genome shotgun sequence.
ACCESSION   DASFRC010000028 DASFRC010000000
VERSION     DASFRC010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 18112)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18112)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18112
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.028"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            236..2350
                     /locus_tag="U1087_000669"
     CDS             236..2350
                     /locus_tag="U1087_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase C-terminal domain-containing
                     protein"
                     /protein_id="HEM4755172.1"
                     /translation="MKKKNILLPVMSTLLLAPFVLAQQVQAAETTTAATTTNQPATTD
                     ATATVPATSVENVATEETVVPAAEETIEAVIIHTNDVHGRILEEKNVIGDAKAAAVIE
                     EERAKVENTIVVDAGDAFQGLPISNSTKGEDRANIMNQVGYDAMAVGNHEFDFGMDQA
                     IKYKETLNFPLLSANTYVNGARVFEASTIVDKTPTVVGDEFVVIGVTTPETATKTHPK
                     NVEGVTFTDPVTEVNKVIDEVEARALADNRVYKNYIILAHLGVDSTTPVEWRGSTLAE
                     ALSKNSKLAGKRVIVIDGHSHTVEATTYGDNVTYNQTGSYLNNIGKVTLKSDKLLGEA
                     SLISAADTKNVTPNAKIAALVDEIKAKYEAENAQVVIENNPVELNGDRSNVRVRETNL
                     GNAVTDAIYAYGQTGFSNKTSLAVTNGGGLRATIAKDQPVTKGDIIAVLPFGNIVSQI
                     TVTGQQIYDMFTKSLSSTLQVNPETGEMLLDENGMPLFEASGGFLHISGANVFYDPTL
                     PVEERVLLIGILNPETGEYDALDLEKTYYLATNDFLAAGGDGYTMLGGAREEGPSMDS
                     VFAEYLKTADLSAYEVVNPYSRIIPVNSSIDTDEDGYPDFIEILLDTDPENPASNPET
                     VPAENTDSPSNQVQNTSATDKKAPVDSPKVGDKKTEVASPAKTTKAGVLPNTGDQMNL
                     TLSLFGLGLAGLAVAVGRRKEN"
     gene            2402..3049
                     /locus_tag="U1087_000670"
     CDS             2402..3049
                     /locus_tag="U1087_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Maf family protein"
                     /protein_id="HEM4755173.1"
                     /translation="MQTVFQYQKERDREQISSYVLLSNSPRRKQLLGFLQPQIASVEV
                     DERGIEEHFMKQFATDDFLTRAAKTCCEISKAKSDMDLVTGHLYISADTIVVSDGQIF
                     NKPQDLTEAETMLRSYFGKSHHVVTSVCLRTRHSLDVFYTVAQIDFVDYYSALEEVIQ
                     SYIREKQPLDKAGAYGIQELDPRFVSGISGDIHTIIGLPVAEVSRRIFSEEGFEK"
     gene            3101..3589
                     /locus_tag="U1087_000671"
     CDS             3101..3589
                     /locus_tag="U1087_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HEM4755174.1"
                     /translation="MTVDIERYKQLAQQKQGEHRKFLANLKKKAPKNLDRIVQDIHAE
                     VFSEIDCTECANCCKTLGPLFTEADITRIAKHLRMKLPVFEDMYLHVDEDGDKVFQSM
                     PCPFLGGDNLCSIYDARPKACREFPHTDRKKIYQINNLTIKNTLICPAAYLFVEKLRE
                     RI"
     gene            4039..4998
                     /locus_tag="U1087_000672"
     CDS             4039..4998
                     /locus_tag="U1087_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000063196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein"
                     /protein_id="HEM4755175.1"
                     /translation="MNALLFDERPIVANPVLAREIGLNEAIVLQQINFWLEVNKQNGK
                     NYHDGRYWTYNSIRAWHESDFSYLSYETVKRTFSKLEKAGFLLTANYNKDPRDKTKWY
                     SLDLERIFELQEMVKIKRNQIAEKVLDEGINSTLTNALGQNDPMEKFNLTQCTRSKSS
                     TALGQNDPIHGVNLNQPLPNKTTNNTTEDTSFYINQSIEEGDELEKLKKQVQYELLVQ
                     SGCREKLCEWDEVLPVIADVFYQHDGTISINQMRLPIDFVKERFRQLTMYHIDYICEC
                     LSKVDTNIRNIRAYILTTAFNAPQTIGAYYSNQVKQDFGGNNL"
     gene            4995..7547
                     /locus_tag="U1087_000673"
     CDS             4995..7547
                     /locus_tag="U1087_000673"
                     /inference="COORDINATES: protein motif:HMM:NF019142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="G5 domain-containing protein"
                     /protein_id="HEM4755176.1"
                     /translation="MISKKCKFCLRKLTIGLVSLSIGLICLNSTQLSSVNSFTVYANE
                     VISHRNDVDGSSKDWGTLNGNQFVVDYTDTSLEISKGAHSSLTENYQAIRIPEAYPYK
                     LLVNGQPKTLSDFRRDKLGKLIAEIDGREVPLLDYGMVEYQLNRYLGQDIYNIYGNLS
                     YTAYAFLTSRNSHHGYFELTEADNVRDTNGQLVTGFFQTPQYYEMASAYQKSNAGYLK
                     VQVGDKELSTNIIDGRLKGLKSATKKYFLVLNSEFSIEPQTGKSIKHLKELTEEEVQQ
                     LNLTDQKVNSNIEFIIDGKTYKTSGRINSWKNSTINPLKTRLAIMSIGDGSNLHGFDL
                     FASNHNYIEVVEKVDNTPVIPESISKKIEYVTEDGEKVGDGHTITGNKGDEVTLEVTP
                     PNGYVFSTTPPTSITLKDNSSYQIIVNEVVGQETVERKEEINYQVIRQENSEMYEDEE
                     VIVSKGSKGIRIIQETFETRKGTRTQKLLDTKTIINKEAVDEIIQYGTKQIEDEQVIT
                     RTEIVPFDVIEESDPNMYEGEVVIVTEGQNGEVTIHDHYKTFKGVRDPEPFNSESTET
                     KIKVNKVVRIGTKKIEGETTEKNSVITPFGVLVEEDDSLFEDERIIVRNGVPGLVDLV
                     TTYKTNKGEKVGDPINISENVVRAPVDEVVKVGTKPIESITSSEKLLDIPFEVEKKID
                     DTLEEGIEKTIQEGKNGQKRVIVVTNYLRGVQNGDVQIEEEVILEPVKEIILVGTKKV
                     QKQNQTPNKNETDDNSKSPILPQVTEGENGKPKNQESNRSVSDYPEKSKEKISQTQAN
                     GNDNSGKKIVAEKLPETGDTVVNPFLVIVSSLLCLVTSIGMIMWKDKKSDDK"
     gene            7537..8031
                     /locus_tag="U1087_000674"
     CDS             7537..8031
                     /locus_tag="U1087_000674"
                     /inference="COORDINATES: protein motif:HMM:NF024099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PcfB family protein"
                     /protein_id="HEM4755177.1"
                     /translation="MINEDVGNRLVTLNLRLAKVSAKLIVAALKVLAKEAESKKLSVK
                     QYLSHKSEQGEVPLKDLVGKGSLENIPMKHPELLELKKELNKHGVRFSILKNKENKNF
                     EVFFQAKDTAILEHSFKQAVQKAERKTRIKQSTLKKIKQYQKSLGEQIIKPKIKQKHQ
                     EQSL"
     gene            8043..9830
                     /locus_tag="U1087_000675"
     CDS             8043..9830
                     /locus_tag="U1087_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018579571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretory system conjugative DNA
                     transfer family protein"
                     /protein_id="HEM4755178.1"
                     /translation="MEVIEQIKLDILNSIPIGDRRTLIKSFIPYLLFFYLGTCLGHHI
                     RSFKGGDVLDRLFQAILEIESMSWLFIPSFDDLLIGIGLSISVWGVMYSKKRHAKKFR
                     HGVEYGSARWGDGKDIQPYEDPIFENNILLTNSEKLTMNSRPSNPKFARNKNILVVGG
                     SGSGKTRFFVKPNLMQMHSSYCVTDPKGTIVLECGKMLESNGYQIKILNTINFKKSMK
                     YNPFAYLKSEKDILKLVQTIIANTKGEGEKAGEDFWVKAEKLYYTALIGYIYYESPKE
                     EQNFNTLLAMLDASEVREDDENFKNAIDYLFLALERKKPHHFAVKQYKKYKLAAGKTA
                     KSILISCGARLAPFDIEELRELMSDDELELDTLGDRKTALFVIISDTDDTFNFVVSIM
                     YSQLFNLLCDKADDVYGGRLPVHVRCLLDEFANIGLIPRFEKLIATIRSHEISAAIIL
                     QAKSQLKAIYKDNADTIIGNCDTELFLGGKEGTTLKELAENLGKETIDLYNTSETRSN
                     QKSFGLNYQKLGKELMSRDELKVMDGGKCILEIRGTRPFYSDKYDITKHKHYKLLEDF
                     DKRNKFDIEKYLKKRGGVKLTENTKVIQL"
     gene            9903..10211
                     /locus_tag="U1087_000676"
     CDS             9903..10211
                     /locus_tag="U1087_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006270424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEM4755179.1"
                     /translation="MEHEMININAHLVKDVVFSSFESEDGIVPVVNFSLVKKYGKGKE
                     YTNCSAYGDKVEIAKEFEKGDLIHVFGYFKENRKGDKVYKNFIVKSMNKIEQDEMEEE
                     "
     gene            10211..10426
                     /locus_tag="U1087_000677"
     CDS             10211..10426
                     /locus_tag="U1087_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Maff2 family protein"
                     /protein_id="HEM4755180.1"
                     /translation="MDFFTQGVDVLKTLVIAIGGGLGAWGVINLMEGYGNDNPGAKSQ
                     GIKQLMAGGGIVLIGLKLIPLLANLIQ"
     gene            10435..11298
                     /locus_tag="U1087_000678"
     CDS             10435..11298
                     /locus_tag="U1087_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000466911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755181.1"
                     /translation="MFDIFGKLEEMIQEILLDMIKGTLTSMFTDLNHQLDFVSGQVGQ
                     SPNQFNAEVFSFIKHINDSVVLPIAGLVITAVLCLELIQVVMQKNNMAEVDTFEFFKY
                     VIKMWVAVYLVSHAFEFAMAAFDMGQHMIGQATGVIHGETSISSEQITAMVDSLKDKN
                     IGELAGIVFELQAVKLTIQIISLIILIITYGRMFEIYAYSSVAALPFATLGNREWGQL
                     GHNYIRGLFALALQGLFLVICFGIYAVLLRGVKMTDIHMSVFSILGYTVLLGFMMLKT
                     GTLARSIMNAH"
     gene            11311..11679
                     /locus_tag="U1087_000679"
     CDS             11311..11679
                     /locus_tag="U1087_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PrgI family protein"
                     /protein_id="HEM4755182.1"
                     /translation="MAYVQIPKDLSKVKTKIAFNLTKRQLIGFSLAGFVSLPVYLSIR
                     ESVGNDLAMLVFIILAFPFLFLTFYEKDGLTSEIYLKYIFLQQHYQPCVRYKRALYKA
                     KFKEEVHETRKKKKTGTRIS"
     gene            11636..14065
                     /locus_tag="U1087_000680"
                     /pseudo
     CDS             11636..14065
                     /locus_tag="U1087_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637000.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            14073..14633
                     /locus_tag="U1087_000681"
     CDS             14073..14633
                     /locus_tag="U1087_000681"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755183.1"
                     /translation="MGKSKRMVRETNKKRYSKSKPDIGQRKEVQDFSGRAVDEKVRFQ
                     HQIIHKGSKLECNHLKGDTSEKKNHIHKKSNDKSLQTHSNNQDANKSTIQLDSLRTKM
                     VNQESSQQSHLPERLQVESRPPTQRRQVQLNQRNSFENQKFSQTQNDYATTVQTSLHS
                     EIKTSFEEDIQPPPLEMDGRPPVLNL"
     gene            14930..17287
                     /locus_tag="U1087_000682"
     CDS             14930..17287
                     /locus_tag="U1087_000682"
                     /inference="COORDINATES: protein motif:HMM:NF017102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HEM4755184.1"
                     /translation="MLVKERGNIFSDRPLSPFETGLELSQNEADSTGFVETASIIEGD
                     RNVKVNDDSILSSRIIPGNRNSQIIISDESKNPNIRRMFVKNSQHLQNDKMVTLIDEA
                     CQSSEQFQPNLNDNTITVGQTDLSINAWSKKLHQSKFSLFSSNILQSNAVIEKVKIGE
                     NQFSTRTRKQSSSRQVKKEAKVIVDKGSILDSTNNKDSQIDSLVSKPTSNTSLLPVDR
                     RPTYALTKTTMNQTYKGRLPSKNNIKVKPNKPLRFPNGQAQVHEKINSLVNEPIEFVK
                     DRKNNRLLKNIEKSKLGRIQKTPYKKVMSVMANSEFLAASYLQAGAEENVAVDATTKA
                     MNIHATTTMKIAQKSNRKKTLKKLTKKAKIRQSQLEFRHKYRLLKEDKTFKRQSFYRK
                     AMYRHRMRQQIRKKHLPRFRDRIKEEAIKILNQFVQYITTKWKSMLVLVLAVFSLLTV
                     VYSNSQFMFGALSSVSYQLTTTSYLSSEEMLIALNHIFSTYELTLSNQLTRLKESKPG
                     YEEYIVKGREQIGHDPHVLLAYLTARFGEIKDQASVEPAMRQLFEQMYQVTYREEKEI
                     RYRTVKEEVLDTSGKKTIVEKRVPYLYRKLIATVSKKDMDGLVHEIFASKPQNLEHYK
                     ILRESKGNLEASFPSGTGISLPGNVSSVYDVNLTGGNFPPPNPSHVAALNGGYPGQCT
                     WYVYNRFSQLGRPIQHSPMGNGGEWAFYAAKYGYPVSREAAVCMPPTVPYADPTYGHI
                     AFVERVNPDGSIVISEMNVKGEFVISTGYLPREMAAQCYYINFGL"
     gene            17298..17513
                     /locus_tag="U1087_000683"
     CDS             17298..17513
                     /locus_tag="U1087_000683"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755185.1"
                     /translation="MRKDIQMLQKKKEKLLEKKQKLDQDLAQVLQDEQDLIYEEVIVV
                     FEKSNLSLEEFTKKVLFEKELSHETII"
     gene            17497..18093
                     /locus_tag="U1087_000684"
     CDS             17497..18093
                     /locus_tag="U1087_000684"
                     /inference="COORDINATES: protein motif:HMM:NF025641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4366 domain-containing protein"
                     /protein_id="HEM4755186.1"
                     /translation="MKRLFSFVRFAGLVMLFSGCQTIYASSPNTDTNSQPVAISVNPQ
                     ASEQSNAKGQVTENVDANNQDYEITESVATKRQFVTFTSKSGKVFHLIIDHDKGGQNV
                     QLLTEVSEQDLLNLIESTNTVAVKPQKTEEVVEEKPAKKEEPKQNSSVGSYIIIGLFL
                     IGVLCAGYYMKVIKPKKEHNFDEFEEDDDYVSEGEEEV"
BASE COUNT         6322 a         2903 c         3659 g         5228 t
ORIGIN      
        1 gcggattttg cctcgaagtc tgctaattct ccgtttgttg gtgatagtct gaaaggacaa
       61 gtcctttaca ccattgcaaa tggacaaata gtatttggta aataggaaat gagtggatta
      121 gatagctaat tcgcttattt cgaacctttt tgacatgtaa gcggttttaa tgtttttgtt
      181 ttttgttaaa aagtgtataa tagagatata aaaaatgccg aagaaaggtc tatttatgaa
      241 aaagaaaaat atcttgttgc ctgtaatgtc cacactcttg ttggctccat ttgttttagc
      301 tcaacaagta caagctgctg agacaacgac tgcagctacc acaaccaatc agccagcaac
      361 gactgatgca actgctacgg taccagcaac gtcagttgaa aacgtagcaa cggaggaaac
      421 agttgtccct gctgcggaag aaacaataga ggcagttatt atccacacaa acgacgttca
      481 tggtcgcatt cttgaagaaa agaatgtcat cggtgacgct aaggctgcgg cagtcattga
      541 agaagaacgt gccaaagtag aaaatacaat tgtagtagat gctggtgatg ccttccaagg
      601 acttccaatt tccaactcta caaaaggtga agaccgcgcc aatatcatga accaagtcgg
      661 ctatgatgca atggctgttg gtaaccacga atttgacttt gggatggatc aagcaatcaa
      721 gtacaaggaa actttgaact tcccgctatt gagtgctaac acttacgtta atggtgctcg
      781 tgtttttgaa gcttcaacta ttgtcgataa aactccaact gttgtaggcg atgaatttgt
      841 agttatcggt gtaacaacac ctgaaactgc tacaaaaacc catcctaaaa atgttgaggg
      901 agtaacattt actgacccag tcacagaagt caataaagtg attgacgaag tggaagcacg
      961 tgctctagca gataatcgtg tttacaagaa ctatatcatt ctagctcacc taggtgtcga
     1021 ttctacaaca cctgttgaat ggagaggttc aactcttgct gaagcacttt ctaaaaatag
     1081 taaattagct ggtaaacgtg ttattgttat tgacggtcat tcccacacgg tagaagcaac
     1141 tacctatgga gataacgtta cttataatca aacaggctct tacttgaaca atattggtaa
     1201 agtaaccttg aaatccgata aattattggg tgaagctagt ttgatttctg ccgcggatac
     1261 taaaaacgtg acgccaaatg ctaaaatcgc agccttggtt gatgaaatta aagcaaaata
     1321 tgaagctgaa aatgctcaag tagttattga aaataaccca gtggaattaa acggagaccg
     1381 ctcaaacgtg cgtgttcgtg aaaccaactt ggggaatgca gtgacggatg cgatctatgc
     1441 ttatggtcaa acaggatttt caaacaaaac tagccttgct gtgactaacg gtggtggtct
     1501 acgtgcaaca attgctaaag atcagcctgt tacaaaaggt gatattattg cagtcttgcc
     1561 atttggtaac attgtttctc aaatcactgt gactggtcag caaatttatg atatgtttac
     1621 caagtcttta tcatctacat tgcaagtgaa tccagaaact ggcgagatgc ttttagatga
     1681 aaatggcatg ccgctctttg aagctagtgg tggattccta cacatttcag gagcaaatgt
     1741 attctacgat ccaactcttc ctgtagaaga acgtgttctt cttatcggta ttcttaatcc
     1801 agagactggc gaatatgacg ccttggatct tgaaaaaacg tactatttag caacaaatga
     1861 cttccttgct gctggtggtg atggctacac aatgcttggc ggagcacgtg aagaaggtcc
     1921 ttcaatggac agcgtctttg ctgaatacct aaagacagct gacttatcag cttatgaggt
     1981 tgtcaaccca tattcacgta tcattcctgt aaattcaagc attgatacgg atgaagatgg
     2041 ctacccagac tttatcgaaa ttttattgga tactgatcca gaaaatccag cctcaaatcc
     2101 agaaactgtt ccagccgaaa atacggattc accatctaat caagtacaaa atacttcagc
     2161 aacggacaag aaggccccag ttgattctcc gaaagtagga gataaaaaaa cagaagtagc
     2221 aagtccagca aaaactacaa aagcaggagt cttgccaaat actggtgatc agatgaatct
     2281 gacgctcagc ctgtttggtt taggtcttgc aggactggcc gtggcagtag gtcgtagaaa
     2341 agaaaattaa tcaatcatct gaaaacaggg tcttcggact ctgtttttga ctggaggaaa
     2401 catgcaaact gtatttcaat atcaaaaaga gagggatcgt gagcagatta gttcttacgt
     2461 tctgcttagc aactccccac gtcgtaaaca attattggga tttttacaac cacaaatcgc
     2521 atcagttgaa gtggatgagc gtggtatcga agaacatttt atgaaacaat tcgctacaga
     2581 tgattttctc actcgagctg caaaaacctg ttgtgaaatt tccaaagcca aatcggacat
     2641 ggatttggta actggtcatc tctacatttc tgcggataca atcgtcgtgt cagatgggca
     2701 aatttttaac aagcctcaag atttgacaga agctgaaacc atgttacgtt cctattttgg
     2761 aaagagtcat cacgttgtaa catctgtctg cctacggaca agacactcac tagatgtttt
     2821 ttatacggtt gcacagattg attttgtcga ctattattca gcccttgaag aggttattca
     2881 atcatatatc cgtgaaaagc agccactcga caaggcaggt gcatacggta ttcaggagct
     2941 ggatccacgc tttgtgtcgg gcatttcagg ggatattcac accattattg gtctacctgt
     3001 agccgaagtt tcccgcagga ttttttctga agaaggtttt gaaaaatagc agagctcaat
     3061 agctagtttg tggtataata gtggtcgaaa aggagagttt atgaccgtcg acattgaaag
     3121 atacaagcaa ttggcccagc agaagcaagg agaacatcga aaatttctag caaatttgaa
     3181 gaaaaaagca cctaaaaatt tggatagaat tgttcaagat attcatgccg aagtattttc
     3241 tgaaatcgac tgtacagagt gtgccaactg ttgtaaaacg ttgggaccac tctttacaga
     3301 agcagatatt acccgaattg ccaagcattt gcgcatgaaa cttccagttt ttgaggatat
     3361 gtatttgcat gtggatgagg acggagataa ggtatttcaa tccatgccct gtcccttcct
     3421 tggaggcgat aatctatgta gtatctatga tgctcgtccc aaagcctgtc gagaatttcc
     3481 gcatactgac cgcaagaaga tttatcaaat caacaattta acaataaaaa atactctgat
     3541 ttgtcccgca gcctatctct ttgtcgaaaa gttacgggag agaatttaag aggaacaagt
     3601 aagacaaaat attgattttc tgctataata ataaaaaaac aagccgtttt tacggctttt
     3661 ttcaatgaat catatttagg aggaccccat ggcaattatt caatggttta ttggacatgt
     3721 atgaaaagcc aatataattg aaagaaaatt tggtacctgt tttttagaat taactcagcg
     3781 taaaagcctg attctacggg cttttttagc tttcctttat aattttttaa cattttgaat
     3841 tacactaaat aattagcaag tttattgcta tttaatcaaa tattctcaat acttttaact
     3901 atttttggtt tattttttgg tttgattata tcaataaatc tcattaaatc tatcatgtat
     3961 cattcgtttt aaacttatcg agcaatcaga attcttctgg ttgcttttct ttttaaagaa
     4021 tttttatagg aggtgtctat gaatgctctc ttgtttgatg agcgaccaat tgtcgcaaat
     4081 cctgtcttgg ctagagaaat aggtttgaat gaagcaattg ttctccaaca aataaatttc
     4141 tggcttgaag ttaataaaca aaatgggaaa aattaccatg atggtagata ttggacatat
     4201 aattctattc gggcttggca tgagtccgat ttttcatatc ttagttatga aacagttaag
     4261 aggacttttt caaaactaga aaaagcaggt tttcttttaa ctgccaatta caataaagat
     4321 ccaagagata aaaccaagtg gtattcattg gacttagaaa gaatttttga attacaggag
     4381 atggtaaaaa taaaaagaaa tcaaattgca gagaaagtat tggatgaagg aataaattct
     4441 acattaacca atgcattggg tcaaaatgac ccaatggaaa agttcaattt gacacaatgc
     4501 actcgttcaa aaagttctac tgcattaggt cagaacgacc caatacatgg tgtcaatttg
     4561 aaccaaccat taccaaataa gacaacaaat aatacaacag aagatacttc attttatatc
     4621 aatcaatcta ttgaggaggg ggatgaactt gagaaattaa agaaacaagt acagtatgaa
     4681 ttattagtac agtcaggttg tcgagaaaaa ttatgtgaat gggatgaggt tctaccagtg
     4741 atagctgatg tgttttatca gcatgatgga acaatttcta tcaatcagat gcgattgccg
     4801 attgactttg taaaagagcg atttagacag ctgacaatgt atcatattga ctacatctgc
     4861 gagtgtttat cgaaggtcga tacaaacatt cgaaatatcc gagcttatat tttaacaaca
     4921 gcttttaatg cacctcagac tattggtgcc tattattcaa accaagtgaa acaagatttt
     4981 ggaggaaata acttatgatt tcaaaaaaat gtaaattttg tctgcgtaaa ttaacaattg
     5041 gactggtttc tctttccata ggacttatat gtcttaattc tacacaactt tcatctgtaa
     5101 attcatttac agtatatgcc aatgaagtaa tttctcatcg aaatgatgta gatgggagta
     5161 gtaaagattg gggtactcta aatgggaatc aattcgttgt tgattataca gatacaagtt
     5221 tggagatttc taagggggca cattcgagcc ttactgagaa ttatcaggct attcgtattc
     5281 ctgaagctta tccatacaaa ttattagtca atggacaacc taaaactttg tcagatttta
     5341 ggcgtgataa actcggtaag ctaatcgcag agattgatgg tcgtgaagtt ccattattag
     5401 attatggaat ggttgaatat caattgaacc gttatttagg tcaagatatt tataatattt
     5461 acgggaacct ttcttacact gcatatgctt ttctaacaag tcgaaattct catcacgggt
     5521 attttgaatt gacagaagca gacaatgtac gagatacaaa tggtcaatta gtcacaggat
     5581 tttttcagac tccacaatac tatgaaatgg cttcagcata tcagaaatca aatgcaggct
     5641 atttaaaagt gcaggttggt gacaaggagt tatcaactaa catcattgat ggtagactaa
     5701 aggggttgaa atcagctact aaaaaatatt ttttagtttt aaacagtgag ttttcaatag
     5761 aaccacaaac agggaaatct attaagcatt tgaaagaact tactgaagag gaagttcaac
     5821 aattgaatct gaccgaccaa aaagtaaatt cgaatattga atttataatt gacggaaaaa
     5881 catacaagac gagtggaaga atcaactcat ggaaaaactc tacaatcaat ccgttaaaaa
     5941 ctcgtcttgc aattatgtcg attggtgatg gaagcaacct acatggattt gatttatttg
     6001 cttctaatca caactatatt gaggttgttg aaaaagttga taacactcct gttattcctg
     6061 aatcaatttc taagaaaatt gagtatgtaa cagaggatgg agaaaaagtt ggtgacggac
     6121 atacaataac cggcaacaaa ggggatgagg taacacttga agtgacacca cctaatggtt
     6181 atgtattttc cacaacacct ccaacaagta taacacttaa agataatagt tcatatcaaa
     6241 ttattgtgaa tgaggtagtt ggccaggaga ctgttgaaag gaaagaggaa ataaactacc
     6301 aggtaatacg tcaagaaaac tcagaaatgt atgaagatga agaagttatt gttagtaaag
     6361 gtagtaaagg tatcagaata attcaagaaa cattcgaaac aagaaaaggt actagaacac
     6421 aaaaattgct tgatacgaaa actattataa ataaagaagc ggtagacgaa atcattcagt
     6481 atgggacgaa acaaattgaa gatgaacaag taataacaag aacagagatt gtaccattcg
     6541 atgtaattga agaatcagat ccaaatatgt atgaaggtga agttgtaatt gttactgagg
     6601 gtcagaacgg tgaggtaact attcatgacc actataaaac gtttaagggt gtaagagatc
     6661 ctgaaccatt taattcagaa tctactgaaa cgaaaataaa agttaataag gttgtaagaa
     6721 ttggaactaa gaaaatagaa ggagagacta ctgaaaaaaa cagtgtaata accccatttg
     6781 gagttcttgt tgaggaagat gattcgttgt ttgaggatga gcgaattatt gtgagaaatg
     6841 gcgttccagg gcttgtagat ttagttacaa cttacaagac aaacaagggg gagaaggttg
     6901 gtgacccaat caatatatct gaaaatgttg taagagcacc agttgatgaa gtggtcaaag
     6961 tgggaacaaa accaatagaa tctatcacta gttctgaaaa attgcttgat attccattcg
     7021 aagtggagaa aaaaatagat gacacacttg aagaaggtat tgagaaaact attcaagaag
     7081 gtaaaaacgg tcagaaaaga gtgattgttg taacgaatta cctaagaggt gttcaaaatg
     7141 gtgacgtcca aattgaagag gaagtcattt tggaaccagt aaaagaaata atattggttg
     7201 gtacaaagaa ggtgcaaaaa cagaatcaaa ctccgaacaa aaacgagact gatgataatt
     7261 caaaatctcc aatcctacca caggtaacag agggtgaaaa tggtaaacca aaaaatcaag
     7321 agtccaatcg atctgtatca gattatccag agaaatctaa agagaaaatt agtcaaacgc
     7381 aagcgaatgg taatgacaat tctggcaaga aaatagtggc tgaaaaattg cccgaaactg
     7441 gtgatacagt tgtaaatcct tttctagtca tagtaagcag tttattgtgc ctagttactt
     7501 caatagggat gataatgtgg aaggataaga agtcagatga taaatgagga tgttggaaat
     7561 cgtttagtta cattaaatct tcgtctggcg aaggtatcag ctaaattgat agtagcagct
     7621 ttaaaagtat tggctaagga ggcagaatca aaaaagttat cagttaaaca atatttatca
     7681 cataaaagtg aacaaggaga ggttccttta aaagatttgg ttggcaaggg ttcactagag
     7741 aatatcccta tgaaacatcc tgaattactt gagttaaaaa aggagctaaa taaacatggt
     7801 gttcggttct ctattttaaa aaacaaagag aacaaaaact ttgaagtatt ttttcaagcg
     7861 aaagacacag ctatattaga acactcattc aaacaagcag ttcaaaaagc tgaaaggaaa
     7921 acaagaatca agcagtcaac cttgaaaaaa atcaaacagt atcaaaaatc ccttggagaa
     7981 cagataatca aaccgaaaat caaacaaaaa catcaagaac agtcattgta ggaggtgata
     8041 ggattgaagt aatcgagcaa attaaacttg acattctaaa tagtattcca attggagata
     8101 ggcgaacact tattaaaagt tttattccct atcttctttt tttctatctt ggaacctgtt
     8161 taggccacca tatccgaagt tttaaagggg gcgatgtatt agataggcta tttcaagcaa
     8221 ttttagaaat tgaatctatg agttggttat tcattccaag ttttgatgat ttgcttatcg
     8281 gtattggttt atctataagc gtttggggag tgatgtattc aaaaaagcgt catgcaaaaa
     8341 aatttagaca cggagttgaa tatggttctg caagatgggg agatgggaaa gatattcaac
     8401 catatgagga tccaattttt gagaataata ttttgttgac aaatagcgaa aagctaacta
     8461 tgaattcccg accgtcaaac ccaaagtttg ccagaaataa aaatattctg gtggtaggtg
     8521 gctcaggcag tggtaagact agattttttg taaaacccaa tcttatgcaa atgcattcga
     8581 gttactgtgt aacagaccca aaagggacga tagttttaga atgtggcaag atgttagaaa
     8641 gtaacggtta tcagataaaa atcttaaata caatcaactt caagaaatcc atgaaataca
     8701 accctttcgc ttatttgaaa agcgagaaag atattctcaa gttagttcag acaatcattg
     8761 ctaatactaa gggtgagggt gaaaaagctg gagaagattt ttgggtcaag gctgagaaac
     8821 tttattacac ggcacttatt ggttatatct actatgaaag tccgaaggaa gaacaaaact
     8881 ttaatacttt acttgcaatg ttggatgcta gtgaggtgcg tgaagatgat gagaatttta
     8941 agaatgccat tgattatcta ttcttagctt tagaacggaa aaagcctcat cattttgctg
     9001 taaaacagta caaaaagtac aagttagctg ctgggaaaac tgcaaaatcg atcttgattt
     9061 cttgtggtgc aaggttagca ccttttgata ttgaagagtt gagagaattg atgagtgatg
     9121 atgagttaga attggatact cttggtgacc gaaaaacggc actctttgtc attatttctg
     9181 atacagatga cacatttaac tttgtggttt ccattatgta ctcgcaacta ttcaatttac
     9241 tctgtgacaa ggcggacgat gtttatggag gtcgattacc agtacatgta cgttgcctat
     9301 tagatgaatt tgccaacatt ggtttaattc cacgatttga aaagttgatt gctaccattc
     9361 gttctcatga aatttctgct gctatcattc ttcaagcaaa atctcaactt aaagccattt
     9421 ataaagataa tgcagataca attataggaa actgtgatac cgagttattt cttggtggca
     9481 aagaaggaac tactctgaaa gaattagcgg agaatttagg taaagaaaca atcgatctat
     9541 acaatactag tgaaactagg tccaatcaga aatcatttgg tctgaattac cagaaactag
     9601 gaaaggagct aatgtcacga gatgagttaa aagtcatgga tggtggaaaa tgtattcttg
     9661 agattcgtgg tacacggccg ttttattcag ataagtatga tattaccaag cataagcatt
     9721 acaaattatt agaggatttt gataagagaa acaagtttga catagaaaag tatctcaaga
     9781 aaagaggcgg agtcaaacta actgagaata caaaggttat tcaattgtag gaggttgctt
     9841 atgaggatta gagcaccacc aacatacaca aaacgtaaag aaaaaataga aagaggaaaa
     9901 ttatggaaca tgaaatgata aatattaacg ctcatcttgt aaaagatgtt gtgttttcaa
     9961 gttttgaatc cgaggacgga attgtcccag ttgtaaattt ctcccttgtt aaaaaatatg
    10021 gaaagggtaa ggaatacact aactgttctg cctatggtga taaggtagag attgcaaaag
    10081 aatttgaaaa gggagatctt atccatgttt tcggttactt taaagaaaat cgtaaaggtg
    10141 ataaggtata caagaatttt attgttaaat caatgaataa aattgaacaa gatgaaatgg
    10201 aggaagagta atggattttt tcacacaagg agtggacgta ttaaaaacat tggttatcgc
    10261 aattggcggt ggtttaggtg cctggggcgt tattaacctc atggaaggtt atggtaacga
    10321 taacccagga gctaagtcac agggtatcaa gcaactgatg gcaggtggtg gcattgtgtt
    10381 aattggttta aaactaattc ctctgcttgc taatttaatc caataggagg agctatgttt
    10441 gatatattcg gaaaactaga agagatgatt caagaaattc ttttggatat gataaaaggg
    10501 actttgacaa gtatgtttac tgatttgaat catcaattag actttgtatc tggtcaggtc
    10561 ggtcaatcgc caaaccagtt caatgctgaa gtgttttcct ttatcaaaca catcaatgat
    10621 agtgtcgtac taccaatagc tggtttggta attacagctg tattatgttt agaattgatc
    10681 caagtagtga tgcaaaagaa caatatggca gaagttgata cgtttgaatt tttcaaatat
    10741 gtcattaaga tgtgggttgc agtatacttg gtatcgcatg cttttgaatt tgccatggca
    10801 gcatttgata tgggacagca catgattgga caagcaacag gagtcattca tggcgaaaca
    10861 tctatatcat ccgaacagat tacagcaatg gttgacagtt taaaagataa gaatattggt
    10921 gaattagctg gtattgtttt tgaacttcaa gcggttaagc taacgataca gattatttcc
    10981 ttaatcattc ttatcatcac ttatggaaga atgttcgaaa tttatgctta tagttcggtt
    11041 gctgccttgc catttgctac acttggcaat agggagtggg gccaacttgg acataactac
    11101 attcgtggac tgttcgcatt ggctctgcaa ggtttgttcc tggttatctg ttttggaatc
    11161 tatgcggtgt tacttagagg tgtaaaaatg acggatattc atatgtccgt cttttccatt
    11221 ttaggttata cagttctgct aggattcatg atgttgaaaa ctggtacact tgcaaggtcg
    11281 attatgaatg cccactagag aggagagtat atggcctacg ttcaaattcc aaaggattta
    11341 tccaaggtaa aaactaaaat tgcatttaat ttaaccaagc gtcagttaat tggtttttca
    11401 ttggcaggct ttgttagtct gcctgtttat ttatcaatta gggaaagtgt tggaaatgat
    11461 ttggcaatgt tagtctttat tattcttgct ttccctttct tatttttaac tttttatgaa
    11521 aaagatgggt taacgagtga aatctatcta aagtatattt tcttacaaca acactatcag
    11581 ccatgtgtgc ggtataaaag agcactttat aaagcaaaat tcaaggagga ggtacatgag
    11641 accagaaaga aaaagaaaac aggcacaaga atttcttgaa gtgaagcagg cccaactaaa
    11701 aaagatacaa aaggaaacag caaaacagga aggaaattcg tttgtagctt ctataaaatc
    11761 attttttgaa ttaggtgaaa aatgtttgac tgtagaagat acaattccta ttgagaaagt
    11821 gtatgagaat gggatttgtc gactaactga tggctatttt actaaaatga ttgcttttga
    11881 agacatcaac taccaactag ctttggaaga gcaacgagat tacatcttca atcaatttgc
    11941 ttcattttta aatagttttg ataacaatac cagattgcaa ctctgtttta cgaatcaact
    12001 tggaaggtta gaagaattag ctgatgcaat tacaatccca attaaaaatg acggacttga
    12061 ggaaattcga agtgagttta ggactatgct tcaaaatcaa ttggagaaag gaaataatgg
    12121 attaaggcag acaaagtata tcgtttttgg tgtaaaagag gattcgtata ggcaagcaaa
    12181 ggttgtatta tcaaggctag aaattgactt acaatctcat ttaaaatgga tgggaattcg
    12241 ttctactgta ttaaacggtt ttgaacgttt gattgtactt catcatattt tgaacccgac
    12301 tgagcactta tctacattac ctgatgaatt ggaaaatcgg gattgtcgtt ctataatcgt
    12361 accagataaa attcactttc agaagaagta tttttcaatg gataatgtcc tatgtcagac
    12421 tagtcatgtg cagatattag catcagaatt gtctgataga ttcttaactg aattactttc
    12481 actagaggag aacatggttc tatcattgca tattcaagcc ttggatcaag ttgatgcgat
    12541 aaagttagtc aaacgtaagt tcaccgatgt gcaacggatg acgatggaag agcagaagaa
    12601 agcttatcgt tctggttatg atttagatat tattccttca gacttgatga cctacggtac
    12661 tgatttgaaa cacctattga atgatttaca aagtcgtgac gagaagatgt ttctcgtttc
    12721 gtttatcatt ctaaaccaag gattgtcaaa agctaaactg gacaatgcag tctcccagtt
    12781 ggcgaccatc tgcagtcgcc acaattgtat gcagaaatgt ttggattacc aacaggagca
    12841 gggcttaata tcagcactac cattaggaat gaattgcatc aaaataaagc gataattaac
    12901 aacttcaagc acagccgtat ttattccgtt tacgactgaa gaattattca tgacctctag
    12961 tacatccatc tattatggtc taaatgccat tagtcataac ttaatcatgg cagacagaaa
    13021 gaaactaaag aaccccaatg gtttaatctt ggggacgcca gggtctggaa aatcattctc
    13081 agcaaagcgt gaaatcacca gtgctatctt agtaactgat gatgatattc tcatctgtga
    13141 tccggaagga gagtatggtg ctttagttga agcatttggt ggagaggtta ttcatgtatc
    13201 cgcaaaatca aaagatttcc taaatccctt ggatattaac tttaactatg gggatgggga
    13261 tgcaccattg aaggataaag cgaattttat tatgtctatg cttgaattgg ttgtaggtgg
    13321 ttctggttta actgcagcag aaaagtcagt tatcgatagg tgtcttccaa aaatttatga
    13381 agcgtatttt gaaaaaccga taccagagaa tatgccaatt ttacaagacc tatatgaatt
    13441 attgttaaaa caggaggaaa gtgttggccg gaaattagcg actgaaatgg aaatttatgt
    13501 gacaggttcc cttaatgttt tcaatcatcg ttccaatgtt gacttgaata agtccctctt
    13561 atgtttcgat attaaagagt taggtaccca attgaaaaag attggtatgt tagttattca
    13621 agaccaggta tggaacaagg tttcacaaaa taggcagagc caaaagtcaa ctcgctatta
    13681 tatagatgaa tttcacttac tactaaagga agaacaaaca gctcagtatt ctgttgaaat
    13741 ttggaagagg tttaggaagt ggggaggtat tccaactgga ttaacccaga acgtgaagga
    13801 tttattggca agcaaagaaa ttgaaaatgt ttttgataac accgatttta tcatgatgtt
    13861 aaaccaggct tctggcgata gagaaatatt agctagaaag ctaaaaattt caccttatca
    13921 gctcaattac gtgacaaact ctaatgcagg tgaggggcta ctattctttg ggaataccat
    13981 tgtcccattc ctagaccaat ttcctaagaa tacactcttg tatcaaaaga tgactaccaa
    14041 accagaggag gtcaagaaag gctaggtgag aaatgggaaa gtcaaaacga atggtccgag
    14101 agaccaataa gaaacgctat tctaaatcta aacctgatat aggacaacgg aaagaagtac
    14161 aagatttttc tgggagagcg gttgatgaga aagttcgctt tcagcaccaa attattcata
    14221 agggaagtaa actagagtgt aaccatctta aaggtgatac gtcagaaaaa aagaatcata
    14281 ttcacaaaaa atcaaatgat aaatccctgc aaacacattc taacaatcaa gacgcaaaca
    14341 aatcaactat acaacttgat agtttacgaa ctaaaatggt taatcaggaa agttcgcaac
    14401 agtctcatct accagaaaga ttacaagttg aatcaaggcc accgacacag aggagacaag
    14461 ttcaattaaa tcaacgtaat tcttttgaaa atcaaaaatt ttcacaaaca cagaacgact
    14521 acgcaactac tgtccagact agtttacatt ccgaaatcaa aacaagtttt gaggaggata
    14581 ttcaaccacc ccctcttgag atggatggcc gacctcctgt cctgaacttg taagtataca
    14641 tgaagacttt gttaattcaa ctgaattata tataaagaag catggggata tagagtcaaa
    14701 aactagtcat attcagggaa aaagcgtttc tctgagcaat cagtcagatg ttggaaaaaa
    14761 tcccgaaagt ccatttcgta gatttgagac taatcaaagt agaatcgttg atgcagactc
    14821 aaagttttcc catcgtagaa atgaggggga aacaaaactt attcatcacc aaagccaaga
    14881 aaatacttct caacttagaa aaaagaagag aagaatacac ggtcaaggtg tgttagttaa
    14941 agagcgtggc aatattttct cagatagacc tttatcacca tttgaaactg gtttagagtt
    15001 atctcaaaat gaagcagatt ccactggttt tgttgagaca gcttcaataa ttgaaggtga
    15061 taggaatgta aaagttaatg atgattctat tctttcaagt cggattattc cgggcaatag
    15121 aaactctcaa atcatcattt ctgatgaatc aaaaaatccg aatatcagaa gaatgtttgt
    15181 aaagaatagt cagcaccttc aaaatgataa aatggttact ctaattgatg aagcttgtca
    15241 aagttcagag caatttcagc caaatcttaa tgataataca attacggttg gacaaacaga
    15301 tctgtctata aatgcctggt caaaaaagtt acatcaatca aaatttagcc tattctcaag
    15361 taatattctg caatcaaatg ctgtcattga aaaggtaaag attggagaga atcagttttc
    15421 aacacgaaca agaaagcaat cttcaagtag acaggtaaaa aaggaagcaa aagtaattgt
    15481 tgataaggga tctattctag attctactaa taacaaagat agtcaaattg attctttagt
    15541 atccaaaccc acgtcaaata ctagcctatt acctgttgat agaagaccaa cttatgcttt
    15601 gacaaaaaca actatgaatc aaacatataa ggggcgtctt ccgtcaaaaa ataacattaa
    15661 ggtaaaacca aataaaccac tcagatttcc aaatggacag gcacaagtac acgaaaagat
    15721 aaattcatta gtaaatgaac ctattgaatt cgtcaaggat aggaagaata accgtttatt
    15781 aaaaaacatt gaaaaaagta aacttggtcg aatccaaaaa actccatata aaaaagtaat
    15841 gtcagtaatg gccaatagtg agtttctagc agctagttat cttcaagcgg gggctgagga
    15901 gaatgtggca gtggatgcaa caacaaaagc gatgaatatc catgcaacta caactatgaa
    15961 gattgcccaa aaatctaatc gaaaaaagac tttgaagaaa ctgacaaaga aggcaaagat
    16021 tagacaatca cagttggagt ttcgacataa gtatcgtttg ttgaaggaag ataaaacttt
    16081 taaacggcaa tcattctacc gcaaagcgat gtatcgtcat cgaatgaggc aacaaatacg
    16141 taagaaacac cttcctagat tcagagacag gataaaagaa gaagcaataa aaatacttaa
    16201 tcaattcgtt caatacatta ctacaaaatg gaagagtatg ttagttttgg ttttggctgt
    16261 attttcactg ttgacggttg tttattctaa tagtcaattt atgttcggtg cattatcatc
    16321 agtttcttac caacttacca ctacatctta tttatcttca gaggaaatgc taattgcctt
    16381 gaatcacatt ttttctacct atgaattgac tttatccaat cagttgacta gattgaagga
    16441 atcaaaacct ggatatgaag aatacattgt aaaaggtagg gaacaaattg gccatgatcc
    16501 gcatgtctta ttagcctatc tgacagctcg tttcggtgaa ataaaagacc aagcaagtgt
    16561 tgaacctgct atgagacaat tatttgaaca gatgtatcag gttacctacc gagaggagaa
    16621 ggaaatacgg taccgaacag tcaaggaaga agtgcttgac acaagtggga agaaaactat
    16681 tgtagaaaaa cgagttccat atttgtatcg aaaattaatc gcaacggttt ctaaaaaaga
    16741 tatggatggt ctagttcatg aaatatttgc gagtaagcca cagaatttag agcattataa
    16801 gatactacga gaatccaaag ggaacttaga agcttctttt ccttcaggta cagggatcag
    16861 tcttccagga aatgtatcat cagtttacga cgtaaatttg acaggtggta attttccacc
    16921 accaaatcct agccatgttg cagccttaaa cggtggttac cctgggcaat gcacctggta
    16981 tgtatataat cgcttttcac aacttggaag gccaatccaa cattccccaa tgggaaatgg
    17041 aggagagtgg gctttctacg ctgcaaaata cggttatcca gttagtcggg aggctgcagt
    17101 atgtatgcca ccaactgtac cctatgcgga ccctacctac ggtcatattg cgtttgtcga
    17161 gcgagttaat cctgatggaa gtatcgttat atcagaaatg aatgttaaag gggagttcgt
    17221 gatttcaaca ggctatcttc ctcgtgagat ggcggcacaa tgttattaca taaattttgg
    17281 attataagga ggaatatatg cgtaaagata tccaaatgtt gcaaaaaaag aaagaaaagt
    17341 tactagaaaa aaagcaaaaa cttgaccaag atttggctca ggttttgcag gatgaacaag
    17401 atttaattta tgaagaggtc attgttgtct ttgaaaaatc aaatctatca cttgaagaat
    17461 ttactaaaaa agttctattt gaaaaggagt tgtcgcatga aacgattatt tagttttgtg
    17521 aggttcgctg ggttagttat gctttttagt ggttgccaaa ctatttatgc aagctcacca
    17581 aatacagaca caaatagtca gccagtagca atttcggtca atcctcaagc ctccgagcaa
    17641 agcaatgcta aggggcaagt tacagaaaat gttgatgcta ataatcaaga ttatgaaatt
    17701 accgaatctg ttgcaactaa gcgacaattt gtcacattca cgagtaaatc aggtaaggtg
    17761 tttcatctga ttattgatca tgataaaggt ggacagaatg tccaattact aacagaagtt
    17821 tcagaacagg atttgcttaa cctaattgaa tcaactaata cggttgcagt caaaccacaa
    17881 aagactgaag aagttgtcga agaaaaacct gccaagaaag aagaaccgaa acaaaattct
    17941 tcagttggta gctatattat cataggtcta tttcttatag gagttttgtg tgcaggttac
    18001 tatatgaagg tcattaaacc caaaaaagaa cacaactttg atgagtttga agaagatgat
    18061 gattacgtaa gtgaaggaga agaggaagtt tgacattgtt ttcctttttt gt
//
LOCUS       DASFRC010000029        17961 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.029, whole genome shotgun sequence.
ACCESSION   DASFRC010000029 DASFRC010000000
VERSION     DASFRC010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 17961)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17961)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17961
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.029"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(7..1347)
                     /locus_tag="U1087_000685"
     CDS             complement(7..1347)
                     /locus_tag="U1087_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018164876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GHKL domain-containing protein"
                     /protein_id="HEM4755187.1"
                     /translation="MSVVEYIVEGLVSFVSIIILFFSINRLNYSIRSIALVILLRVPI
                     AIVFATLNQLFPSQFLSYFDTPLYGFLLAMILLRPLPKTLLIFYGLLPFTLENLFYRM
                     VSYFVLPLLGQSSGIIEDTPPFILVNFLSISAALFFLKWLKYDFVKLRTDNLVTEDKR
                     LLYLTNWVMVAYYILMQTLTYLEYDIGLPTMAHRQFILVTYLVIFMGIIKQLDFHLRK
                     KLQEQLDFQQTLQLKSLEDYSKQVEDLYREVKGFRHDYANLLTTLRLAIEDNDIEQIK
                     DIYQSVLKDSHKRLRASKYDIGRLVNIDNSALKSLLASKFLQANDNNVSVSLEVPDVI
                     KPQGMELVDFITIVSILCDNAIDAAIDAAPKVTIAFLTVDDKQMFIIENTTKVENIDL
                     SNVYSFGHSSKGDNRGVGLYNVMKILERYPHVSLNTTSASYLFCQSLEIGLTSN"
     gene            complement(1361..2098)
                     /locus_tag="U1087_000686"
     CDS             complement(1361..2098)
                     /locus_tag="U1087_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012516119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM4755188.1"
                     /translation="MNIFVLEDDFKQQARIEKIITKLLEKHNIVPKKFEISGKPHQLL
                     QAIEEKGVHQLFFLDIEIKEDELKGLQVAKQIREIDPYASIVFVTTHSEFMPLSFRYQ
                     VSALDYIDKELGVTEFESRIEAALLHTHNKDNSAVSDDSFYFKSKYAQVQYPFNEVYY
                     IETSPRPHRVILYTKTDRMEFTASLSDILKQDKRLVQCHRSFAINPRNVLKVDRNEKQ
                     IYFPNGATCFISRQKLESTLAAVANLH"
     gene            complement(2100..2441)
                     /locus_tag="U1087_000687"
     CDS             complement(2100..2441)
                     /locus_tag="U1087_000687"
                     /inference="COORDINATES: protein motif:HMM:NF016296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family transcriptional regulator"
                     /protein_id="HEM4755189.1"
                     /translation="MNFMIIKVKDETKKVLLSDILYIISHPSKPHYIQIVTEKEIYDC
                     LQKLQNIEKMYPEYFIRCHRSSLVNRSKIKVINSREKRIFLGEKGEHCLTFSRRRYQD
                     ILHQWINKGGM"
     gene            2820..3035
                     /locus_tag="U1087_000688"
     CDS             2820..3035
                     /locus_tag="U1087_000688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009880371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755190.1"
                     /translation="MNNYLKNVRDYSELATIIIIGQNIDYEELFKNHYRVFGVIDTTN
                     NKSLTFIRDQVHFYLDGLYGLKKKESD"
     gene            complement(2971..4851)
                     /locus_tag="U1087_000689"
     CDS             complement(2971..4851)
                     /locus_tag="U1087_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000261815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="HEM4755191.1"
                     /translation="MVVTKHFAVHSTKYRKSLIKYILNPEKTKQLKLVSDFGMSNYLD
                     FPSYGELVEMYQANLTNNDRLYDSRNDRQQIKQAKIHAHHLIQSFSPEDKLTPEEINR
                     IGHETIKELTGGNFRFIVTTHTDRDHVHNHILINSVDLNSDKKLKWDYAQERNLRMIS
                     DRLAKEAGAKIIPPKRYSHEQFETYRKTNHKFELKQRLYFLLENSKNFEDFVAKASDL
                     NVEMDFSRKHARFFMTDRDMKQVIRGHQLDKRQPYTEDFFREHFAKRAIEQRLDFLLP
                     RARDLSHLLDMAEQLNLTISPKKKHVTFTLKEGDRTISMENKKVSTKHLYDVQFLEDY
                     FDKRDITPEHDLANLVSDFEAYQEERDKDKLPREELLAAYEDFKDKRDQIQEFEVVLA
                     DHQIDKLVKDGIFIRMTYGVKKDGLVFIPNRNLDIHESDQGKIYHVFIRETAQFFIYN
                     KENSDLNRYMRGRELIRQLTHDSKHLPKRRRPNMTSLKEKIAELNLLIELDLNNQSYQ
                     EVKDELINEIAQLDLTITDLQDKVAHLNKVAEVLLNLNNSDPENRRLARYDYAKMNLT
                     PAIKLEEVEKEISENQDTMTKWIDDYEYKVRRLEILVQTLSHSLSSSDHRDRPSKNEL
                     GL"
     gene            complement(4838..5203)
                     /gene="mobC"
                     /locus_tag="U1087_000690"
     CDS             complement(4838..5203)
                     /gene="mobC"
                     /locus_tag="U1087_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000263054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /protein_id="HEM4755192.1"
                     /translation="MENRYRTNLKKVFLTDHELATLNDRIGQSGCKNFSAYARKVLLN
                     PNMTFLTIDTSNYEELVFELKRIGNNLNQIARTVNQTHILTPSDREILVQGIGQLIKE
                     VEKDFNIKCQQLKEFYGRH"
     gene            complement(5206..5568)
                     /locus_tag="U1087_000691"
     CDS             complement(5206..5568)
                     /locus_tag="U1087_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013851909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755193.1"
                     /translation="MTDHYRIIRKEINLTPEELEQIQELMRQEHAEQFSPFVRQKLMD
                     LVERKQAATDWFAFWQSQKIEQISRDILQVTIMAEQTQHVTAEHLRIILTCVQELMAE
                     VEKFIPLSTDFRDKYMGG"
     gene            complement(5896..7329)
                     /locus_tag="U1087_000692"
     CDS             complement(5896..7329)
                     /locus_tag="U1087_000692"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755194.1"
                     /translation="MTEKLIKIDSQNLPGDGFIGFERYLEQYGLPTDNVIASESERQL
                     MQKMLPQILENMPQEHKTNARYLSKFVAGAAIGLYDASLNFVWNEVMIKIYQKIIRYG
                     VEIFFNSAVSESDKELYKSEEDLPHLKDRVVLDHCKKLGLISQALYLRLTHILDMRNH
                     VGASHPNDDQIRTSELLGWLQTCIDDVISEKVNTHAITVKSIIDNTKSRESFFSQIDK
                     EQFENSIKELSPQFIANLTDTLFGIFVSENYKGKQFILENFLSLLIISWKYTTDTFRY
                     SLGERLDVFRGQLNEYKINQAELFFEKVNGKRYYSTDHKIIQLSVKCEQLKNAHYNWD
                     NYANETPIAREVLHLAPTPSDVPEMRKDLLIETFLLCRIGKNVSYQKGVSPGGRLYYD
                     KFFQKFDEDAIRRMIILLSSDNINIYGDIQNSNLLEILNLIPRTMIGEQYIEVLEQLT
                     AFISDNKKITSYFNTSDFKRFRDNFLS"
     gene            7548..8197
                     /locus_tag="U1087_000693"
                     /pseudo
     CDS             7548..8197
                     /locus_tag="U1087_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018165746.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
     gene            8481..8780
                     /locus_tag="U1087_000694"
     CDS             8481..8780
                     /locus_tag="U1087_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001072430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755195.1"
                     /translation="MNQLEFQRNELQMDYFSESYRQFESDFYRYSALDIPLTFLTDDI
                     LLAMAKSKKTYIKLNKEKSKDNRDHYFLFRVESLDNNKFIRKYTYEKTMTSIKES"
     gene            complement(8793..8939)
                     /locus_tag="U1087_000695"
     CDS             complement(8793..8939)
                     /locus_tag="U1087_000695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755196.1"
                     /translation="MLRDLFKPKEKSLPSSDRFKSLIHTLSAMTDTELEKRIEQFKQS
                     KKES"
     gene            complement(8982..9401)
                     /locus_tag="U1087_000696"
     CDS             complement(8982..9401)
                     /locus_tag="U1087_000696"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755197.1"
                     /translation="MTTQTDWTYDGSLDQPTPTTPDQERAKIAALFGKGDPAPSPTTE
                     TIDYQAEFQKLKAGELQQASQENTEVSTPAVTLSPTLDKDPTTLYKEHLQKQLTSHET
                     DMSSYQQELDRLQELVNEKGNTIKTITAILKAMDTLV"
     gene            complement(9398..9634)
                     /locus_tag="U1087_000697"
     CDS             complement(9398..9634)
                     /locus_tag="U1087_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755198.1"
                     /translation="MSQVARLEEKVKKQAEKVAREEERLNTYQDQLQEAMYSTFITYQ
                     ASSQIRFDEALERVFGKLSKPHTPQESNDTRRTE"
     gene            complement(9700..10791)
                     /locus_tag="U1087_000698"
     CDS             complement(9700..10791)
                     /locus_tag="U1087_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018367274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HEM4755199.1"
                     /translation="MIALETIKKKSIVDVAGALGVPLKRLSSTLYEQVEHDSFKIFTN
                     TNTFKWFSRDIQGDVIDFVQLIAGVSFKEAIHFLDKGDFPEQEVQVLKLEPFRYSLPE
                     SKDFGSARTYLKTIRHLSDETINTFGRQGLLAQGKWQSGNFSEPVVVFKSKDHHGRLV
                     GASLQGIEEHPDRYERGRLKNIMKGSHGYAGISLTIGKPKRLVFAESVIDLMSYYECQ
                     KEKLADVRLVSMEGLKKSVIAYHVIRLASEEKGNFSFLDELDKGRLSHYLDVILQTST
                     YFNQHNHLLTFAVDHDKAGRDFIEKLKDQGFPLEQDLPPLGLLDGKADWNEELMRRKS
                     EPSLDDWLCQFYEERSQAVYSPRTPTLDL"
     gene            complement(10835..11479)
                     /locus_tag="U1087_000699"
     CDS             complement(10835..11479)
                     /locus_tag="U1087_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018367275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755200.1"
                     /translation="MIDKTKQIILVSVASLALLAFVSTMGYSLGKQSVTNETRAAIKQ
                     EAKKLQEEQAQKEKSSRLSQEGVEEFLRHYFTKKQLGENNTRLKPYLTESAYREELTR
                     QEDTLQQVYKDYILDYQYQEADIYLNHASNEVLAEVSYTVTYVPDLEQKDKAQTNQVE
                     KRLLRLTYTKLGDKLLVNHLQTYSVGLSEALTKVQFDRPEPAAVPELPVSTTRP"
     gene            complement(11619..11939)
                     /locus_tag="U1087_000700"
     CDS             complement(11619..11939)
                     /locus_tag="U1087_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000645121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="role in replication"
                     /protein_id="HEM4755201.1"
                     /translation="MKARYKGNVVEVWEIGKQTSQPDWVKEAFKKNYIVWLDNHVRIL
                     MAGLNPSIATNMKIGVTGTAGGGFAGYGMYVLGYPGDYLDVTNHRVVSLKHFQRDYEI
                     LKEN"
     gene            complement(11957..12184)
                     /locus_tag="U1087_000701"
     CDS             complement(11957..12184)
                     /locus_tag="U1087_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004261064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComC/BlpC family peptide pheromone/bacteriocin"
                     /protein_id="HEM4755202.1"
                     /translation="MNTDVMKRFKSLSNENLMHIAGGWSGWGDILQGILGGFAPSPTV
                     DQLNGKWPVRNPPKPCSPYGTGGTPNACNGF"
     gene            complement(12385..12708)
                     /locus_tag="U1087_000702"
     CDS             complement(12385..12708)
                     /locus_tag="U1087_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018367276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755203.1"
                     /translation="MFEELGQIILILIAIGGILLLLYRLFLAATGLLLIGGGLFLAFM
                     EVYGLYLLFTETDLFVRDFQTNDWLSFPTFFVGINGLLASLLVKKLSKMVIKRLSMLL
                     KPGQT"
     gene            complement(12710..13015)
                     /locus_tag="U1087_000703"
     CDS             complement(12710..13015)
                     /locus_tag="U1087_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018367277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755204.1"
                     /translation="MTDQFENMKHQLDNLLSEGFSTPDQYEVYRDLKDQYEESTGDVS
                     FSIREVTGQLEVIMTNRETFFPDLDEGTRVEYLDLVERLEELDNTKAAYYRRQLGEA"
     gene            complement(13084..>17961)
                     /locus_tag="U1087_000704"
     CDS             complement(13084..>17961)
                     /locus_tag="U1087_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018367278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEM4755205.1"
                     /translation="YNPQFEEERAELKSLVSDKEYSNMKQSSLTAYYTDPAIIRAMWE
                     KLVSDGFRGGRVLDPSMGTGNFFSAMPAQLTEKCDLYGVELDGITGAIAKQLHPNTTI
                     FLQGFEDVPFQTDSFDLVISNIPFGNFRIADNRYDKPYMIHDYFIKKSLDLVHDAGQV
                     AVISSTGTMDKRVDNVLQDIKDTTQFLGGVRLPDSAFKAIAGTSVTTDILFFQKDLDK
                     SVTDETITFSGSKRYATDDRIWLNPYFDGEDNPQVLGTYEVKNFNGGTLSLKGSGQDL
                     LLELKEALKQVSLPQVKDNIFIQSQVLMEKKVDKSIPQRIWDSLELYSFGYEGDTVYY
                     RDRDGIRVGAKTEEISYYINDAGEFVAWDSKYSQATIDRFVALTVTDETAVDVYLSKE
                     ATKTGRHKGLYKKTVFYEGSLSDKEVARIKGMVNLRNTYQEMIDLQRDYDYDRDRFEG
                     LLGDLNYQYDRFVKRYGYLNSNVNRNLFDSDDKYSLLASLEDEYIDPVDKKVKYKKSL
                     AFEKALVRPDRILKEVKTAQDALNTSLADGRGVDIPFMMSLYPGKTEGDVIEELGDLV
                     LLDPAYALLGKAVYVSRQDFLSGDILTKLDQVDLLQKEDNSLADWRHYQTLLEAVKPR
                     QIGLADIAYRIGSRWIPKEVYGQFAYTVLLEEERPLDDPILADVIEVSPIDGTYTLSK
                     VFTNCPVSAQEYTLGVKGSRYDSGRKVFENLLNSNQPTITKTVKEGDKQKQVTDAQRT
                     SLLRSREADMQGLFQDFVLSSPEVQVLIEDTYNTLYNRTVSKTYDGSHLVIDGLAQNI
                     TLRPHQKNAIQRIVEEKRALLAHEVGSGKTLTMLGAGFKLKELGMVNKPLYVVPSSLT
                     AQFGQEILKFFPTKKVFVTTKKDFVKSRRKQFVSRIITGDYDAIVIGDSQFEKIPMSK
                     AKQEVYILDKLSQMREIYLNSENDYTVKESERAIRSLEERLEELQKLDRDSFIEFENL
                     GIDCLFVDEAHHFKNIRPITGLGNVAGITNITAKKNVDMEMKVRQVQSEHDNRHVIFA
                     TGTPVSNSISELYTMMNYVQPDVLERYQVAHFDSWVGAFGQIENSMELSPTGDKYQPK
                     KRFKKFVNLPELMRIYKETADIQTSDMLDLPVPEARIIPVESELTDSQRYYLEELVAR
                     SEDIKNGLVEPTVDNMLKITGEARKLAIDMRLIDPAYKLSDSQKLLQVVDNVERLYRE
                     NMVTESTQMIFSDIGTPKKDGDVFDIYNELKVLLVDRGIPANQIAFVHDANTDDKKNS
                     LSRQVNSGEVRILMASTEKGGTGLNVQAKMKAVHHLDVPWRPSDIVQRNGRLIRQGNQ
                     HQEVDIYHYITKGSFDNYLWQTQENKLKYITQIMTSKEPVRAAEDIDEQTMTASDFKA
                     LATGNPFLKLKMELENELGLLDNERRAFERTKDDYRYTIRVAERDLPALEKRLGRYDQ
                     DIANSKSSKGKDFVMSFGSQNYTEKGEAGEYLHQLIRQNRSETKELRTLAHYRGFALK
                     VTTRSMTEPVPEIVTLRVVGDNQYSVSLDLKSPIGTLQRINNVIDDIAKDKEMTETLA
                     KTMRDKAAVAKEQVDKTFSKEEHYQKLKAQYDVLAPLIEAGESIEIIEEALAPFLNQP
                     NKQEIVLDDQLSLEI"
BASE COUNT         5026 a         3936 c         3468 g         5531 t
ORIGIN      
        1 ttttacctaa ttagatgtca gtccaatttc taaggattga caaaacagat aagatgcact
       61 agtcgtgtta agtgatacgt gtgggtaacg ctctagaatt ttcatcacat tatataaacc
      121 aactcctctg ttatcccctt tggaactatg accaaaggaa taaacatttg aaaggtcgat
      181 attttctacc ttagttgtat tctcgataat aaacatctgc ttatcatcaa ccgtcaaaaa
      241 ggctatcgtt acctttgggg cggcatctat ggcagcgtct atggcgttat cacataatat
      301 cgatacgatg gtgataaaat ctaccaactc cattccttgt ggcttaatca cgtctggtac
      361 ctccaagcta actgatacat tattatcgtt ggcttgcaag aatttagacg ccagtagact
      421 tttcaaggcg gagttgtcaa tattgaccaa tcgtccgatg tcatatttac tagctcgcaa
      481 tcgtttatgt gaatccttta atacggactg gtaaatgtct tttatttgct caatatcatt
      541 gtcttcaata gccaagcgta atgtggttaa caagttagca taatcatgcc taaaaccttt
      601 cacttcacga taaagatcct caacttgctt actataatct tccaagcttt tgagctgcaa
      661 ggtttgttga aaatcaagct gttcttgtag cttttttcgc aaatggaaat caagttgttt
      721 gataattccc atgaagataa caagataggt cactagaata aattgacgat gagccatggt
      781 cggcaatcca atgtcatact ctaaataagt caaggtctgc atcaagatgt aatacgcaac
      841 catcacccag ttggtcagat agagcagccg tttgtcttca gttacaagat tgtctgttct
      901 taacttgaca aagtcatact ttagccattt taaaaagaaa agagcagccg atatagacaa
      961 gaaattaacg agaataaaag gtggtgtatc ttctataatt cccgatgact gccccaataa
     1021 aggtaaaaca aaataggaca ccatgcgata aaagagattt tctaaggtaa agggcagtag
     1081 accatagaaa atcaaaaggg tcttcggtaa gggccgcagc aatatcatgg ctaggagaaa
     1141 accatacaaa ggggtgtcaa aataagataa aaattgactc ggaaataatt gatttaaagt
     1201 tgcgaaaaca attgcaattg gtactctgag cagaataacc aaggcgattg agcgaatgga
     1261 ataatttagt cggttaatac taaaaaagag aatgataatc gaaacaaatg aaaccaaccc
     1321 ctcgacaata tactcaacaa ctgacatctt atctccttca ttagtgcaga ttagcaacag
     1381 ctgctaaagt tgattctagc ttttgccttg aaataaaaca ggtggctcca ttaggaaagt
     1441 agatctgttt ttcatttcta tccactttaa gaacattcct cggattgatt gcaaacgaac
     1501 gatggcattg tacaagtcgt ttatcttgtt tcaaaatgtc tgacaaactt gctgtgaact
     1561 ccattcggtc tgtcttggta taaaggataa cacgatgagg gcggggagaa gtctcgatgt
     1621 agtacacttc attgaatggg tattgtactt gagcatattt ggacttaaaa tagaatgaat
     1681 catccgatac ggcgctattg tccttattgt gagtatgaag taaagctgct tctattcgcg
     1741 attcaaattc ggtaactcca agctctttgt caatatagtc caaggcagat acctggtacc
     1801 tgaaagataa gggcataaac tcggagtgtg ttgtcacaaa aacaatacta gcataagggt
     1861 caatctctct aatttgttta gcgacttgaa gtccttttag ttcgtcttcc ttaatctcaa
     1921 tatctaaaaa gaagagctga tgtactcctt tttcttctat tgcttgaagt agctgatggg
     1981 gttttcctga aatttcaaat tttttcggaa cgatgttgtg cttttctaac agcttagtaa
     2041 taatcttctc aattctcgct tgttgcttaa aatcatcttc caatacaaag atattcatgc
     2101 tacattcctc ctttgttaat ccactgatgc agtatgtcct gataacgacg tcttgaaaaa
     2161 gtaaggcaat gttctccttt ttctccaaga aaaatacgtt tttctcgaga attgataacc
     2221 ttaatttttg aacggttaac tagactagaa cgatgacatc taataaaata ttctggatac
     2281 attttctcta tgttttgtag cttttgtaaa caatcataaa tctctttctc agtcacaatt
     2341 tgaatgtaat gtggcttaga tggatgcgat atgatatata gtatatctga cagcagcact
     2401 ttctttgttt catctttgac tttgataatc ataaagttca taggtatatc ctcctatgaa
     2461 caccatagca taggaacaac atcatatttc cttcaaatcc taaatggttg tccaaacgtc
     2521 ttgaatggta agattttacc atttaggaaa gttagaggtc tattcaggaa atgaagctca
     2581 ctaaaccaac aataactgat ataattaaat tcctaaatca ttgaaaaaga aaggatacta
     2641 tgcttgaaat ctttccttat tccccattaa gtatttttat cgcaatcgtc attaaaggtt
     2701 acttaatcag tcatcagatt tattcaaaaa tcaaactatc tttctcttat tatccgtata
     2761 agtacgatag tcctactact tattttatca taaaatctaa gtttttaaca tcagagaaga
     2821 tgaacaatta cttaaagaat gtacgagatt attcagaact agcgactatc attattattg
     2881 gccaaaatat cgattatgaa gaactcttca aaaatcatta tcgggtattt ggcgtgattg
     2941 atacgacaaa caataaatca ttaacattta tcagagacca agttcatttt tacttggacg
     3001 gtctctatgg tctgaagaag aaagagagtg actaagtgtc tggactaaaa tctccagtct
     3061 cctaacctta tattcgtaat catctatcca tttcgtcatg gtgtcttgat tttctgagat
     3121 ttctttctcc acctcctcca gtttaatggc cggtgtcaga ttcatcttag cataatcata
     3181 cctagctaac cgtctgttct ctgggtctga gttgttgaga ttgagcagga cttcagcgac
     3241 cttattcaga tgagcaacct tatcctgcaa atctgtaatg gtcaaatcca gctgggcaat
     3301 ttcgttgatg agttcgtctt tgacttcctg ataagattgg ttgttgagat ctagttcaat
     3361 aagaagattg agctctgcaa ttttctcttt aagactggtc atgtttggtc gtctgcgttt
     3421 agggagatgc ttgctgtcgt gagtgagttg gcggattaac tctcgtcctc gcatgtagcg
     3481 gttgaggtca gagttctctt tattgtagat gaaaaactga gcggtctcac ggataaaaac
     3541 atggtagatc ttgccctgat cgctctcatg aatatccaag ttacggtttg ggataaagac
     3601 caagccatct tttttgacgc cataagtcat tctgataaag ataccgtcct taaccagctt
     3661 gtcaatttgg tggtctgcta gaaccacttc aaactcctga atctggtcac gtttgtcttt
     3721 gaagtcctcg taggctgcta gaagttcctc tcttgggagc ttgtccttgt ctcgctcttc
     3781 ttggtaggct tcaaagtctg agaccaggtt agccaagtca tgttctggtg tgatgtctct
     3841 tttatcaaaa taatcctcca agaactggac atcgtacaag tgttttgtgc tgaccttttt
     3901 attctccatg gaaatggttc ggtcgccctc tttcaaagta aaggtcacat gctttttctt
     3961 cggagagatt gtcaggttta actgctctgc catgtccaaa agatgagata ggtcacgtgc
     4021 tctgggcaag aggaaatcca gtcgttgctc aatggctcgt ttggcaaaat gctctcggaa
     4081 aaagtcctcg gtgtagggct gtcgcttatc cagctgatgg ccgcgaatga cctgcttcat
     4141 gtctcggtcg gtcatgaaaa atctggcgtg cttacgagag aaatccatct ctacattgag
     4201 atctgaagcc ttggccacaa agtcctcaaa gttcttactg ttctccagga gaaaatagag
     4261 ccgttgcttg agttcaaact tgtgattggt cttgcggtag gtttcaaact gctcatgcga
     4321 atagcgcttg ggcggaataa tctttgctcc tgcttccttg gccaagcgat cagaaatcat
     4381 gcgaagattc ctctcctggg catagtccca cttgagcttc ttatcagaat tgaggtcaac
     4441 agagtttatc aggatatgat tatgcacatg atctctatct gtatgggttg tgacgatgaa
     4501 acgaaaattg cctcctgtca attccttgat ggtctcgtgg ccaatgcggt taatctcttc
     4561 tggtgtcagc ttgtcttcag gagaaaaaga ttgaatcaag tggtgggcat ggattttggc
     4621 ctgctttatt tgctggcggt cgtttctgga atcatagagc cgatcattgt tggtcaagtt
     4681 ggcctgatac atctccacca gctctccata gctgggaaag tctaggtagt tgctcatgcc
     4741 aaaatcagag accagcttca gctgcttcgt cttttctgga ttgagaatat acttgatgag
     4801 gctcttgcgg tacttggtgc tatgcaccgc aaagtgctta gtgacgacca taaaactcct
     4861 tcagctgctg gcacttgatg ttaaagtcct tctccacttc ctttatgagt tggccaatgc
     4921 cttgcaccaa aatttcacgg tcgcttggtg ttaagatgtg agtctggttg acggtccgtg
     4981 cgatttgatt gaggttgttt ccgatacgtt tcagttcaaa gaccagttcc tcatagttac
     5041 tggtatcaat ggtcaagaag gtcatgttgg gattgagcag aacctttctg gcataagcag
     5101 agaaattttt acagccactc tgtccgatac gatcgttcaa agttgccaac tcatggtccg
     5161 tcagaaagac ttttttgagg ttggtacgat agcgattttc catatctaac ctcccatgta
     5221 cttgtcacga aaatctgtac tgagtggaat aaacttctct acttctgcca tcagctcctg
     5281 cacacaagtt aggataattc gcaagtgctc tgccgtgaca tgctgggtct gttcggccat
     5341 gatcgtcact tgtaaaatgt ctcgactgat ttgttcaatc ttctgggact gccagaaggc
     5401 aaaccaatcc gttgctgcct gcttcctctc aaccaagtcc atcagctttt gacggacaaa
     5461 gggggagaat tgctctgcgt gttcttgcct catcagctcc tgaatctgct ccagttcctc
     5521 tggtgtcaga ttgatttcct tacggataat gcgatagtgg tctgtcatct cgttatactc
     5581 cttctctagt tgcctctatc gggtcagccc cgataccgtg tgggatacgg gtgcttccta
     5641 aaagcctcat cgcttcgctt ttcggctttt gcgagctcag ttattgtgtc cacaataacc
     5701 caaaatctaa tcgtcagctg aacccaaacc ttacaggttg gtcagccgac gataagaaaa
     5761 tgtggtggct tcccccccaa acccccaaga aaaaatcaag gcttgatttt ctaaaactag
     5821 atagagtgta acaagagaga gctgaaaaaa ttatcacagg aaaagaaaaa gagccatttg
     5881 gctcttggaa aattatcaag ataaaaaatt atctctaaaa cgtttaaaat ctgaagtatt
     5941 aaaataacta gtaatcttct tgttatcact aataaaggca gttaattgtt ctaaaacctc
     6001 tatatattgt tcaccaatca tagttctcgg tattaaattt aatatttcta gcaaattact
     6061 attttgaata tcaccataaa tattgatatt atcactactg agtaaaataa tcatccttct
     6121 tatcgcatct tcatcaaact tttgaaaaaa tttgtcataa taaagccttc ctcctggtga
     6181 aacacctttt tggtaagaaa cattcttgcc aattcgacag agtaagaatg tttctatcaa
     6241 taaatctttt ctcatctctg gaacatctga aggagttgga gctaaatgta atacttctct
     6301 agcaattggt gtttcattag catagttatc ccaattataa tgagcatttt ttaactgttc
     6361 acattttaca gacaactgga taatcttatg gtccgtagaa taatatcttt tcccattcac
     6421 tttttcaaaa aatagctcag cttgatttat tttatattca tttaactgcc ctctaaaaac
     6481 atcgagcctc tctcccaagc tatacctgaa agtatctgta gtgtacttcc aactaattat
     6541 taacaaagaa aggaagtttt ctaggataaa ttgttttccc ttataatttt ctgatacaaa
     6601 tatcccaaaa agtgtatcag taagattggc aataaactga ggcgatagct cttttatact
     6661 gttttcaaat tgttctttat ctatttgtga gaaaaaactc tctctgctct tagtattatc
     6721 aataatactt tttaccgtta ttgcatgagt atttactttt tcagaaatta catcatctat
     6781 acacgtctgt aaccagccta gtaattccga tgttctaatc tgatcatcat ttggatgaga
     6841 agctccaaca tgatttctca tatccaaaat atgtgttaat cttaaataca aggcttgtga
     6901 aattaaaccc aattttttac agtgatctaa aacaactcga tcttttagat gcggtaaatc
     6961 ttcttctgat ttatataatt ctttatcaga ttcactaact gctgaattga aaaaaatttc
     7021 tacaccataa cggattatct tttggtatat tttaatcatt acttcattcc aaacaaaatt
     7081 tagtgaagca tcataaagac caattgcagc tcctgctaca aattttgaaa gataacgggc
     7141 gtttgtcttg tgttcctgag gcatattctc taaaatctga ggtaacattt tctgcatcag
     7201 ctgcctctca ctctcagaag caattacatt atcagtaggt agcccatact gctctaaata
     7261 tctttcgaaa ccaataaatc catcaccagg aagattctgt gaatcaattt taatcaattt
     7321 ttcagtcatt ccatcttttc ctcttacaat caatatttga actaatgcac aattttttat
     7381 aatttggcaa ttactttttc taacccattc attataccac actaaagata attctaaaaa
     7441 cgatttatgt acctcccttc aattttaaaa ttgtcatttt tctcttgaaa aataaagatc
     7501 tgtggtaaaa catttgtaag tttatagact gacgattgag gtttactatg ttttcaaata
     7561 agcaactaat acaaaaaaga aatgagttag gtttatccta ggcagaagtc gcacggcagc
     7621 tgaatatttc ccgtatgtct tacaacaact gggaatctgg taaaacaaaa cctaatcaaa
     7681 aaaatcttgc cgaactagca gtccttttcg gtgttgaccc agcttttttt gagtctgaat
     7741 accagattgt ttcaaactat ctgaagctaa atccagtgaa tcagggtaaa gctgatcagt
     7801 atgtcgaaga attattagac actcaacgag aagaagaaaa gaaaagaaaa ttgtccctct
     7861 ttttggtgtt gaggtttact ctgaccttgc cctatccgca ggatcaggta caaccatttt
     7921 tgatgaatac aaagctcaaa cggtttattc tgaggaagaa cggtatggct ttgaccttgc
     7981 tgcttggata gacgatagtt caatggaacc tgtttatcaa aatggagaag tcgccttgat
     8041 tcgtgcaact ggttttgatt aggacggagc agtttatgct ctatcatgga acgatagtgt
     8101 atatatcaaa aaattatacc gtggggaaaa tggatttaga atggtctcta tcaataagag
     8161 ccaccctaag cgttttatcc cttatgaaga tgaatagcgt atcgtagggc ttgttgtcgg
     8221 tcacttcata cctgttcaac ctgaattgct tttggaattg gaaaaactca aagaaaggta
     8281 aactactatt gctaagtcaa gtttatgcta atcaacgacc gactcgtcca accgtaaaag
     8341 accataacac cataaaacac tttgtgggaa ctattcccac tcttactaat agatagcttg
     8401 attataaaga tagccgaggg acatcgcaat gtttctttag ctaatcttct aagtattgaa
     8461 ctcacagaag aggggagaac atgaatcagc ttgaatttca aagaaatgaa ctccagatgg
     8521 attattttag tgagagttac cgacagtttg aatctgactt ctatcgctac tccgcactag
     8581 atattccatt aacatttttg acagatgaca ttttgcttgc aatggcaaag tctaagaaaa
     8641 catatatcaa actaaacaag gaaaagtcta aagataatcg tgatcattat ttcttattta
     8701 gggttgagtc tctagataat aataagttca tccgaaaata tacttatgaa aaaaccatga
     8761 cctcaataaa agagagttag aagttgttgc ttctagctct ctttcttact ctgcttaaac
     8821 tgctcaatcc gcttctctag ctctgtatcc gtcatggctg ataaggtatg aatcaaagac
     8881 ttgaaacgat ctgatgatgg taagctcttc tcttttggtt tgaatagatc tcttaacata
     8941 gtgctccttt cgcaaaaaac agtcccataa ggactgttcg cttagacaag tgtgtccatc
     9001 gcctttagaa tggctgtgat agttttgata gtgttgcctt tctcattgac cagctcctgc
     9061 aagcggtcaa gctcctgttg gtagctgctc atgtcagttt catggctggt cagttgtttt
     9121 tgaaggtgct ccttatatag agtggttggg tctttgtcca aggtaggact tagtgttact
     9181 gctggtgtgg acacctcagt attttcctgc gaggcttgtt gtaattcacc agcctttagt
     9241 ttttgaaatt ctgcctgata atcaatcgtt tctgttgtag gacttggtgc tgggtcacct
     9301 ttaccaaaaa gtgccgcaat ctttgctcgt tcctggtctg gtgtagtggg tgttggttgg
     9361 tctagtgaac cgtcataggt ccaatcagtt tgtgtcgtca ttctgttctc cttgtatcat
     9421 tagattcttg tggggtatgt ggtttggaca gttttccaaa aactcgctct aaagcctcat
     9481 caaagcgtat ttgactgctc gcttgataag tgataaaggt tgagtacatg gcttcctgga
     9541 gttggtcctg ataggtgtta aggcgttcct cttctctagc cactttctcg gcctgtttct
     9601 taactttttc ttctaggcga gccacttggc tcaaactcat aggcattcct ccttctttgg
     9661 gtttgggtct agcttatcag aggcctcttg attttttcat cacaagtcaa gagtgggagt
     9721 tctaggagaa tagacagcct gggaacgctc ctcataaaac tgacatagcc aatcgtccaa
     9781 actaggttcc gactttcgcc tcatcaactc ctcattccaa tcagctttgc catctagtag
     9841 acctaaaggg ggtaaatcct gctccagggg aaacccctgg tcttttaact tctcaataaa
     9901 gtctctccct gccttatcat gatcgacagc aaaggtcaag agatgattat gctgattaaa
     9961 ataggtgctc gtctgtaaaa tcacatccag atagtgactt aatcgtccct tgtccaactc
    10021 atcaagaaag ctaaaatttc ccttttcctc cgaagctaga cggatcacat ggtaggcaat
    10081 aacgcttttc tttaaccctt ccatcgagac cagacggaca tcggccaact tctctttctg
    10141 acactcgtaa taactcatca agtcaatcac agattccgca aagacaagtc gcttgggttt
    10201 acctattgtc aaactaatcc ctgcgtaacc atgggagcct ttcatgatat tcttgagccg
    10261 tccccgttca tatcggtctg ggtgttcttc aatcccctga agactggctc ctaccaatcg
    10321 cccatgatga tccttgcttt taaacacgac cactggctct gaaaagttgc cgctctgcca
    10381 tttcccttgg gcaagaagtc cttgccgacc aaaggtgtta atggtctcat cagataagtg
    10441 acggatggtc ttgagatagg tgcgagcaga accaaagtcc ttactttcag gaagagaata
    10501 acgaaacggt tccagtttta acacctgcac ctcctgctct ggaaaatctc ccttgtccaa
    10561 aaagtgaatg gcttccttga agctaactcc tgctatcagc tgcacaaagt cgatcacatc
    10621 gccctgaata tcccgtgaaa accacttaaa ggtattggtg ttagtaaaga tcttgaagga
    10681 atcgtgttcc acctgctcgt aaagggtgct ggataagcgt ttcaaaggca cccccaaggc
    10741 tcctgccaca tctacgatgg acttcttctt aattgtctct aatgcaatca tctcattctc
    10801 ctatatgaaa ataagcagaa ggctgggctt ctgcttaggg tcttgtggtt gaaacaggca
    10861 attcaggaac agctgctggc tctggtctat caaactgcac tttcgtcagt gcttctgata
    10921 ggcctaccga ataggtctga agatggttga ccaagagctt gtctcccagc ttggtgtagg
    10981 tcaatcgcag gaggcgtttt tcgacttggt tggtctgagc cttgtccttc tgctccaagt
    11041 ctgggacata ggtcaccgta taagacacct cggctaagac ctcgttcgag gcatgattga
    11101 ggtaaatatc agcctcctgg tactgatagt ccaaaatgta gtccttatag acctgttgga
    11161 gggtatcttc ttggcgggtc aattcttcac ggtaggcaga ttccgtcagg taaggcttga
    11221 ggcgtgtgtt attttctccc aattgtttct tggtgaaata gtgacggaga aactcctcga
    11281 caccctcttg agataagcga ctagacttct ctttttgggc ctgctcctct tgtagctttt
    11341 tggcctcttg cttgatagct gccctggtct cgttggtcac actctgtttt cctagactgt
    11401 aacccatggt cgagacaaag gccagtaaag caagactagc tacacttact aagataatct
    11461 gcttggtttt atcaatcatc aatttttcct cttttctgtc atgataaacc aagaatacca
    11521 tgaggagatt ggggatttta tcacaggtct tcaaaataaa aaaaaaacgc atcatgtcaa
    11581 gttttaaaac atcgatatga tacgttttgt tgcaaagact aattctcttt gagaatttca
    11641 taatctcttt gaaaatgttt tagagaaaca acacgatgat tagttacatc aaggtaatcg
    11701 ccaggatagc ccaaaacata cattccatat cctgcaaatc ctcctccagc tgtacctgtt
    11761 actccaattt tcatattagt agctatagac ggattaagtc cagccatcag aattcgtaca
    11821 tgattgtcta accaaacaat atagtttttc ttaaatgctt ctttgaccca atctggttgt
    11881 gaagtctgct tcccgatttc ccaaacttcc acaacattgc ctttataacg tgctttcatt
    11941 ttattcccct caaaaactaa aagccattac atgcatttgg cgtgcctcca gtaccatatg
    12001 ggctacatgg ttttggagga ttcctaactg gccactttcc gtttaattga tctacagtag
    12061 gagatggtgc aaatcctcca agaatccctt gaagaatatc tccccaacca gaccatccac
    12121 cagcaatatg catcaaattc tcattactaa gactcttaaa tcgcttcatg acatctgtat
    12181 tcataatgaa tacctcctta tgttttctat tttttgtccg ttgcaacttg acacccttag
    12241 tataccactc ttcttacaaa aataatcacc atttcctgaa cagtcattta actttcctga
    12301 atgggaaaaa tattgccact caagattaaa atacagccat tcaggaaaag acaccagcca
    12361 aagctggtgt cgataacgaa taacttatgt ctgtccaggc ttgagtaaca tgctcagacg
    12421 tttaatgacc atcttactca attttttgac cagtaagcta gccaataaac catttatccc
    12481 aacaaagaag gtgggaaaac tgagccagtc attggtctga aaatctctga caaagaggtc
    12541 tgtttcagta aacaacaggt aaagaccata aacctccata aaggctagaa agagacctcc
    12601 tccaatgagc aataagcctg tcgccgccag aaacaagcgg taaagcagga gaagtatccc
    12661 tccaatagcg atgagaatga gaataatttg ccctaactct tcaaacatct tatgcctccc
    12721 ctagctgtct gcggtagtaa gccgccttag tgttgtccag ctcctcaagt cgttcaacca
    12781 agtccaaata ctctacccgt gtcccctcat cgaggtctgg gaagaaggtc tcacgattgg
    12841 tcatgataac ctctaattga cccgtgacct cacgaatgga aaagctcaca tcacctgtgg
    12901 attcctcgta ttggtctttc aagtcacgat aaacctcata ctggtcagga gtgctaaaac
    12961 cctcactcaa aaggttatct agctggtgct tcatgttttc aaattggtct gtcatcatgt
    13021 ctctcctttt cttctgttac cattagttta ccgcgttcaa tcctttttgt cagctcattg
    13081 ctgctaaatt tctaaagaaa gttggtcgtc aaggacgatt tcttgcttat tgggttgatt
    13141 aagaaaggga gctagggctt cttcaatgat ctctatagac tcacctgctt caatcagagg
    13201 tgcaaggaca tcgtattggg ctttaagttt ttgataatgt tcttccttac taaaagtctt
    13261 atcaacctgt tccttggcaa ctgctgcctt atccctcatg gtcttggcca aagtttctgt
    13321 catctccttg tcctttgcaa tgtcgtcaat cacattgtta atccgctgga gagttccaat
    13381 aggggatttc aaatccaggc tcaccgaata ctggttgtct cccacaactc taagcgtgac
    13441 aatttcagga acaggttcag tcatgcttct ggtcgtcacc ttcaaggcaa aacctcgata
    13501 atgggcaaga gttcgcagct ccttagtctc tgagcgattc tgacgaatca actggtgcag
    13561 gtactcccct gcctcgcctt tttcggtgta gttttggcta ccaaaggaca tgacaaagtc
    13621 cttaccctta ctacttttag agttcgctat atcctgatca taacgaccga gacgcttctc
    13681 aagagctggc aaatctcgct cggccacccg tatagtatag cgataatcgt ccttagttcg
    13741 ttcaaaggct cgtcgttcat tgtccaaaag acccaattca ttttccagtt ccatcttgag
    13801 tttaagaaag ggattgccag tcgccaaagc cttgaaatca gaagcggtca tggtctgctc
    13861 atcaatgtcc tctgccgctc gaacaggttc tttagaagtc ataatttggg tgatatactt
    13921 gagcttattc tcttgggtct gccagaggta attgtcaaag ctccctttgg tgatgtagtg
    13981 atagatgtcc acctcttggt gctgattgcc ctgacgaatc agccgaccat ttcgctggac
    14041 aatatcactt ggtcgccaag gaacgtccaa atgatgtaca gctttcatct tagcttgaac
    14101 gttgagaccc gttccacctt tttccgttga ggccatgaga attcggacct cgccgctatt
    14161 gacctgacga gatagactat tcttcttgtc gtcagtattg gcgtcatgga caaaggcaat
    14221 ctggttggct ggaataccac gatcgactaa gaggactttc aattcgttat agatgtcaaa
    14281 aacatctcca tctttcttag gtgtgccaat atctgagaat atcatctggg tactttctgt
    14341 caccatattc tcccgataaa gccgctccac attgtccacc acctgaagaa gtttctgact
    14401 gtcagacagc ttgtaagcag ggtctatcaa ccgcatatca atggcgagtt ttctggcctc
    14461 acccgttatt ttgagcatat tatccacagt cggctctacc agaccgttct tgatatcttc
    14521 agaccgtgcc actaactcct ccaagtaata gcgttggcta tccgtcaact cactctctac
    14581 tgggataatc ctagcctctg gcacaggtaa gtccaacata tccgatgttt gaatatcagc
    14641 tgtttcctta taaatccgca taagttcagg caggttgaca aacttcttaa agcgtttctt
    14701 aggctggtac ttatctcctg tcggagacag ttccatcgaa ttttcaattt ggccaaaggc
    14761 tcccacccaa gaatcaaagt gagccacctg ataccgctcc aagacatctg gctgaacata
    14821 gttcatcatg gtgtagagct cactgatgga attggaaaca ggggttcctg tcgcaaagat
    14881 gacatggcga ttgtcatgct ctgactggac ctgccgcacc ttcatctcca tgtccacatt
    14941 cttcttggcc gtgatattgg taatacctgc cacgttgccc aagcctgtga tgggacggat
    15001 attcttgaaa tggtgggctt cgtccacaaa gaggcagtca atgcctaagt tctcaaactc
    15061 gataaagctg tccctatcca gtttttgaag ttcttctaag cgttcttcca gagagcgaat
    15121 ggcccgctcg gattccttga ctgtgtagtc attctcacta ttcaggtaaa tctcacgcat
    15181 ctggctcagc ttatccagaa tatagacttc ttgtttggcc ttactcatgg gaattttctc
    15241 aaactggcta tctccaatga caatggcatc ataatctcct gtgataatac gtgagacaaa
    15301 ctgcttgcgg cgagatttga caaagtcctt cttggtcgtc acaaagacct ttttggttgg
    15361 gaaaaacttg aggatttctt gaccaaattg agcagtcaga ctagacggga caacatagag
    15421 aggtttattg accatgccca actctttcag tttaaacccc gccccaagca tagttaaggt
    15481 cttgcctgaa cccacttcat gggctaaaag ggctcgtttt tcctccacaa tgcgttgaat
    15541 ggcattcttt tgatggggac gtaaggtgat attttgagct aagccatcaa taaccaaatg
    15601 actgccatca taggtcttag acaccgtacg gttatacagg gtgttgtagg tgtcctcaat
    15661 caaaacctga acctctggtg aagataagac aaagtcctgg aaaagcccct gcatgtccgc
    15721 ttctcgactt ctcaagaggc tggttcgctg ggcgtctgtc acctgctttt gcttgtcgcc
    15781 ttctttgacc gttttagtaa tggtcggttg attagaatta agtaggttct caaaaacctt
    15841 tcgtccacta tcataacgtg agcccttaac ccctaaagta tattcctgtg cagaaacagg
    15901 acaattagta aataccttag atagagtata ggtcccatca atcggactaa cctcaatcac
    15961 atctgctagt atagggtcat ccagaggtct ctcctcctcc aaaagcactg tataggcaaa
    16021 ttgcccgtaa acttcctttg gaatccaacg ggagccaatg cggtaagcaa tatccgctag
    16081 accaatctgg cgtggtttga cagcctcaag taaagtctgg tagtgcctcc agtctgccaa
    16141 gctattatct tctttttgaa gcaaatccac ctgatctagc ttggttagaa tatcacccga
    16201 tagaaaatcc tggcgagaga catagactgc tttccctaag agggcataag cagggtctaa
    16261 caagaccaaa tcccctaatt cctcaatcac atcaccttct gtcttgcctg ggtagagcga
    16321 catcataaag ggaatatcca ctccacgacc atcagctagg ctagtattga gggcatcttg
    16381 ggcagtcttg acttccttta gaatacggtc tggacggacc aaggctttct caaaagccaa
    16441 ggacttctta tacttgacct tcttgtccac agggtcaatg tattcatctt ccagactagc
    16501 tagaagagaa tacttatcat cactatcaaa aagattacgg ttgacgttgc tattgaggta
    16561 gccatagcgt ttgacaaagc ggtcatactg gtagttgagg tcgcctaata acccctcaaa
    16621 tctgtctcgg tcatagtcat aatcccgctg gagatcaatc atttcctgat aggtattgcg
    16681 aaggttgacc atacccttaa tacgagcaac ctccttatcc gacaaggatc cctcgtaaaa
    16741 gactgttttc ttgtaaagtc ccttgtgtcg tcctgtcttc gtcgcttctt tggacaggta
    16801 aacatcaaca gctgtctcat cggtcacagt caaagccaca aaacggtcaa tggttgcttg
    16861 agagtatttg gaatcccaag ccacaaactc acccgcgtca ttgatatagt agctgatttc
    16921 ttctgtctta gcccctactc gaatcccatc acggtctcga tagtaaacag tatctccctc
    16981 atagccgaaa ctatagagtt caaggctatc ccaaattctt tgtggaatgc ttttatccac
    17041 ctttttctcc atcagaactt gggattggat aaagatgttg tccttaactt gtggaagtga
    17101 tacctgcttc aaggcctcct tcaactctag caacaagtct tgtccgcttc ccttcaagga
    17161 cagcgttcca ccattgaaat ttttgacctc ataagttcct agaacttgag gattatcctc
    17221 accgtcaaag tagggattga gccaaatacg gtcatccgtg gcataccgct tacttcctga
    17281 aaaagtaatc gtttcatcag tcaccgactt atctaagtcc ttttggaaga agagaatatc
    17341 cgtcgtaaca ctcgttcctg cgatagcctt aaaggccgaa tcgggcagac ggaccccacc
    17401 caaaaactgg gtcgtgtcct tgatgtcctg caagacatta tcaacccgct tatccattgt
    17461 tcccgttgag gaaataaccg ccacttgccc agcgtcatga accaagtcca aggacttttt
    17521 gataaagtag tcatgaatca tataaggctt gtcataacgg ttatccgcaa tcctgaaatt
    17581 cccaaaagga atattagaaa taaccaggtc aaaactatcg gtctgaaaag gcacatcctc
    17641 aaagccctga aggaaaatgg tggtattggg gtgaagctgc tttgcaatag ctcctgtaat
    17701 gccatctaac tccacaccgt aaaggtcgca cttctctgtt aactgagctg gcatagccga
    17761 aaagaaattc ccagtcccca tagaggggtc tagcacacga ccacctctaa aaccatctga
    17821 gaccagtttc tcccacatgg ctctaatgat ggctgggtcg gtataataag cagtcagaga
    17881 actctgcttc atattggagt attccttatc cgataccaaa cttttgagtt ctgctcgttc
    17941 ttcttcaaac tgaggattgt a
//
LOCUS       DASFRC010000030        17779 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.030, whole genome shotgun sequence.
ACCESSION   DASFRC010000030 DASFRC010000000
VERSION     DASFRC010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 17779)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17779)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17779
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.030"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..170)
                     /locus_tag="U1087_000705"
     CDS             complement(<1..170)
                     /locus_tag="U1087_000705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755206.1"
                     /translation="MAYKVIRPFKDLTDPNKHDYALDETYPRDGHKPSDEFIQGLLTG
                     SNSAGSIFLATI"
     gene            complement(183..1352)
                     /locus_tag="U1087_000706"
     CDS             complement(183..1352)
                     /locus_tag="U1087_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001030356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HEM4755207.1"
                     /translation="MNKALIFGARMRAKAAKVVELEESIKDLQKRTALEAEKLERAET
                     EEEVSAVEKDLEELQAELESKEAEKAELEKEIEDLQKQIDEQNRKAPRYGDSRGGKKD
                     MDKETREAFNHYLRTKGQMRDGFKSTEGEALIPEDLLRPKEAKRDETDLTSLVNVVKV
                     RNASGKWSVIKLTDQVMNTIEELAENPDLAKPTFTKVSYEVETRRGHLPVSQELIDDA
                     DYDVMGLVAKQAMNQERITKNTEIAKVLKKATAKNASGLDGLKDILNIELKPYYNASI
                     VATQSLFAALDKIKDKDGRYMLQTDITSPTGYKFAGRVIYVYPDDVIGTSKGDMKAFI
                     GDVTEFATLFDRAQTTVKWQDDKIYGQYLATANRFDVEVVDADAGFYVTYTDAVL"
     gene            complement(1349..1927)
                     /locus_tag="U1087_000707"
     CDS             complement(1349..1927)
                     /locus_tag="U1087_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001172113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 family phage prohead protease"
                     /protein_id="HEM4755208.1"
                     /translation="MQKRKSYMATQFQTREEQESGDLILSGYFIKFDEETELWPGYFE
                     VIKREGVEKAIKDADIRALFNHDHSLVLGRTGNETVRLGVDDVGLFGDIIINKDDPQA
                     VGAYARVQRGDVIGCSFGFFPIKINTVERDDGTYLDTILDLEIFEVSPCTFPAYPQTE
                     IAARQKDFESQLRANREMLDKRKKEIKEKFKL"
     gene            complement(1914..3116)
                     /locus_tag="U1087_000708"
     CDS             complement(1914..3116)
                     /locus_tag="U1087_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016356236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HEM4755209.1"
                     /translation="MGFFDRFRKRSKSQSTVSMLSHSDFGIIFEGDGYVPLARNPDVI
                     LAVNKIADMVSNMTIHLMENTDKGDIRIKDGLARKIDINPCAHMTRKTWIFKIVRDLL
                     LYGDGNSVLHVEYDPVTDYILNLRPFPMDEVSFKSNDLDYVICYKGREYEPDDVVHFA
                     INPDPDSPYVGTGYRLALKDIVRNLNLATQTKKGFMSGKNVPSLIVKVDSSSDELGSQ
                     EGRDRIAKKYLSTSQSGEPWIIPDALMEVEQVKPLNLNDIALNESVEIDKKTVAGLLG
                     VPAFILGVGDFNKEEYNNFVNTTIMSIATTITQTLTRDLLVSSNRYFKFNPRSLYSYD
                     ITELSTVAQQMTNSAAMRRNEWRDWVGMTPDPEMDDIIVLENYLPQGELGNQSKLNKE
                     GGNTDAET"
     gene            complement(3134..3352)
                     /locus_tag="U1087_000709"
     CDS             complement(3134..3352)
                     /locus_tag="U1087_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001002923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755210.1"
                     /translation="MREIVLSEHDIKVLINKGKVRVMLEGEEILVRESYRKDLRAEVI
                     KWDKEIVDVSQDIVRNMPFNSLFQGAAR"
     gene            complement(3360..5135)
                     /locus_tag="U1087_000710"
     CDS             complement(3360..5135)
                     /locus_tag="U1087_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016356235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase large subunit"
                     /protein_id="HEM4755211.1"
                     /translation="MDKDFEKRFADFRHATTNLGKAKAYVDYVLSYQEEHNEERILAV
                     ERFLRDLENPAYELDEDIVDFAVHFIENSIVHQQGDDMYAMSIRNKPLILQPWQHFTV
                     VNLFGFYHAGTNERRFKEALIMLARKNGKTSFTAAIALLYQILDADSGSKCYIVANSV
                     KQALEAFNFIKFNVERWNDKSIRIKDNNQEHSITANFGDDGSFYIQALANDESRLDSL
                     NGNVTVIDEAHTMRNSKKYGLMKKTMSAYRNSMLFVISTAGDIPTGFLANRLKYCQKV
                     LKQLISDESLFIFICKANQTTDGDVGDYLDDNVLKMANPSWGVTVSMPALRAEAEQAM
                     NDPQTRNEFFNKTLNVFTNSMNAYFNPDEFIASDDCYDWSLEELARLPIKWYGGADLS
                     RLHDLTAAALYGIYNDGEKDIDICITHAFFPRVNAQKKANDDGIPLFGWQSDGWLTMS
                     NTPTVLYDDIVKWFIEMRQKGFKIAAVGMDRKFGREFLSKMKKAKFKMIDQPQLFYLK
                     SEGFRRIEFKVKNREFYYLHSEAYEYCVSNVRAIEKVDDAVQYEKLDGDGGTARIDLF
                     DASVFACIQALANLGKNQSVMEFFD"
     gene            complement(5128..5517)
                     /locus_tag="U1087_000711"
     CDS             complement(5128..5517)
                     /locus_tag="U1087_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001118284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P27 family phage terminase small subunit"
                     /protein_id="HEM4755212.1"
                     /translation="MAKPITVKSIKSKVVKQMKDLGTYRKEFEMIIDIFAGMLFQYQK
                     LAQDYADMGYPVTDVYVNKAGAENERKVPILTAMEILRKDILSYSNQLMLNPKSLGEV
                     VEQDKGSPLTEVMKLKDELKKKRVKDG"
     gene            complement(5628..5960)
                     /locus_tag="U1087_000712"
     CDS             complement(5628..5960)
                     /locus_tag="U1087_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016356233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HEM4755213.1"
                     /translation="MAHYYKPVRQSLKTKKWEKFRDKMMRKSDYLCQESLRYGLSVPA
                     EMIHHIFPVSEYPELEFVEWNCLALTNRKHNTFHDRVNNKVVGQGIYWQKKRKKEFQK
                     FYGYPPTF"
     gene            complement(6087..6266)
                     /locus_tag="U1087_000713"
     CDS             complement(6087..6266)
                     /locus_tag="U1087_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000589102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755214.1"
                     /translation="MIKEYRDRQHGLNAIDQLNNDIKNNPGIGFEIVGYQNTVIKTYY
                     NLLVTSILVRRETFF"
     gene            complement(6441..6983)
                     /locus_tag="U1087_000714"
     CDS             complement(6441..6983)
                     /locus_tag="U1087_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000397549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEM4755215.1"
                     /translation="MNRMDPITDRDVIHEIEDYLREWNEMYYLLFETALYTGYRITDI
                     LNIRVRDVQGWDIKLRERKTQKLREVRMTPELKKSMRAFVKGKPLNHFVFKSRQGKNK
                     PISRQRFDQILKHVATELDIDNIAAHSIRKTFGFFYYQKFDGVNDLMTIFNHSSERTT
                     LIYIGDKQVTFKKNMAKFKI"
     gene            complement(7175..7576)
                     /locus_tag="U1087_000715"
     CDS             complement(7175..7576)
                     /locus_tag="U1087_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000736386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM4755216.1"
                     /translation="MKKLSDRELKTLDEELFKFRGIQRTIDLRRLELTTRNPDSQGGP
                     SIGISKPTETIAVKLADDPTLKFLEGFKEIVDKLLANLIDEDKEIFNLRWQYPQLRWE
                     EIADQKFMSRATVYRRRRIILEQYAILKGEL"
     gene            complement(7790..7936)
                     /locus_tag="U1087_000716"
     CDS             complement(7790..7936)
                     /locus_tag="U1087_000716"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755217.1"
                     /translation="MQIVKHALQHYIKREGASEHDVMVEQNLLKKVTQEIDDFKENVM
                     KRTS"
     gene            complement(7948..8223)
                     /locus_tag="U1087_000717"
     CDS             complement(7948..8223)
                     /locus_tag="U1087_000717"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755218.1"
                     /translation="MSLNGIRLLPDYGCKIEIDVVQLLKENEFLKDELYNRAYKDIER
                     QEIEIETLKDKCVDLMLENADYVWDEMARVTAKKRANTRKWRAKACI"
     gene            complement(8440..8853)
                     /locus_tag="U1087_000718"
     CDS             complement(8440..8853)
                     /locus_tag="U1087_000718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007519064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755219.1"
                     /translation="MNTELMNELKELLGLFPMSYINANLEVILIPKTNTYFSLEGVES
                     RRDIIAKLLMWCSRTIAKGQPFKSEKRNCLFREFTKNFLNRYLGTLFSDEDMVLIYQR
                     LGNGINPELTYRFIDSGFDMEVLDDDQRCPIHTET"
     gene            complement(8948..9166)
                     /locus_tag="U1087_000719"
     CDS             complement(8948..9166)
                     /locus_tag="U1087_000719"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755220.1"
                     /translation="MEGLDKVKRVILKHGLKQDNPFVRDVRHSTTGLEIFYGNERQAF
                     RYANWQVGVVMTKQLYLHGNFKIIEVED"
     gene            complement(9154..9954)
                     /locus_tag="U1087_000720"
     CDS             complement(9154..9954)
                     /locus_tag="U1087_000720"
                     /inference="COORDINATES: protein motif:HMM:TIGR01446.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001185495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage replisome organizer N-terminal
                     domain-containing protein"
                     /protein_id="HEM4755221.1"
                     /translation="MANANKRYYWIQLAQDFFKSKEMKLLRKIAGGDTHTIIYLKMML
                     LSLEDNGILFFDGVADNLAEEIALVIDEDVENVKITLVFLQSKKLLSKISDREYFLEQ
                     VPEMVGSETASARRVRKHRENQKVLQSNSDVTNGNGEKEKEQEKDIDTNLSSSSCINN
                     SDYSIKQLFKDFEAGFGRLLSPFEIEDIQKFATEEGLSPELIREALKEGVFRNKPVWN
                     YIKAILRNWKNDKLLTVELVRARQQEQELPKNVDVSPEFLEAMNLWKD"
     gene            complement(9938..10114)
                     /locus_tag="U1087_000721"
     CDS             complement(9938..10114)
                     /locus_tag="U1087_000721"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755222.1"
                     /translation="MVWIVAKKTKTKRGYRFYQKRSFDTWQKARIYQQDLFNKDVNAE
                     MWEENGGIEIGKCK"
     gene            complement(10117..10371)
                     /locus_tag="U1087_000722"
     CDS             complement(10117..10371)
                     /locus_tag="U1087_000722"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755223.1"
                     /translation="MKFWDMMKKFLSVEDDDYIPQDQHELERELAYERYRVKEFKKLA
                     DLKEQECVGKARLIQELNRRIEYLEKVNRCQAELLADREV"
     gene            complement(10373..10561)
                     /locus_tag="U1087_000723"
     CDS             complement(10373..10561)
                     /locus_tag="U1087_000723"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755224.1"
                     /translation="MTEELMLTTEQGLALIAILTIILIWLIRKPVEIEIEVKEPIVEE
                     KQPERNLRYLQIHRYYGG"
     gene            complement(10558..10842)
                     /locus_tag="U1087_000724"
     CDS             complement(10558..10842)
                     /locus_tag="U1087_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000998974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HEM4755225.1"
                     /translation="MNDLMIQMLDQFEAGLMDRALKVMHVVMDEKRRYPMELNKSQCA
                     EMLLGTKDTGSFDARFNCHKDFPRIPNAREKYPRDAVIEWYHNNWQRTAI"
     gene            complement(10903..11610)
                     /locus_tag="U1087_000725"
     CDS             complement(10903..11610)
                     /locus_tag="U1087_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001002368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ORF6C domain-containing protein"
                     /protein_id="HEM4755226.1"
                     /translation="MNEIFVFHGQEVRTVTINNEPWFVGKDVADILGYQNPQKAIRDH
                     VDFEDKLTEQIVQSGQNREMIIINESGLYSLILSSKLPQAKEFKRWVTSEVLPQIRQQ
                     GAYVPENLSDEAFIALFTGQKKLKEQQLALAQDVDYLKNEQPIHPSFAQALLKKRKAR
                     VVACLGGMDSPAYADKVFAQSVFRQAEVDFKDHFNINRYDMLPKKFADAALSYWMTWE
                     PSTNTKMKILEMNAYEL"
     gene            11664..12095
                     /locus_tag="U1087_000726"
     CDS             11664..12095
                     /locus_tag="U1087_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000456432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755227.1"
                     /translation="MDYAIFIQPAISIVVAIISGVWSYLASRANNKTEIEKQAKEHAH
                     AVEKLEKEFQYQLSTLKQQHSLEIEKLKQSHELRLQELEKVSSLDAEKDKALKLNEFA
                     FKALTGEVDLDKALAVNDKVNAYNRKQSLQEQFIQKTSKKS"
     gene            complement(12375..12572)
                     /locus_tag="U1087_000727"
     CDS             complement(12375..12572)
                     /locus_tag="U1087_000727"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755228.1"
                     /translation="MKIAEKVVRIESDAYEYVVDFANEHDLKIGEAVSILIRYCASKD
                     LIVKQAHVEVVEVQNVVEEDD"
     gene            complement(12577..12789)
                     /locus_tag="U1087_000728"
     CDS             complement(12577..12789)
                     /locus_tag="U1087_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011054420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM4755229.1"
                     /translation="MSQQHQKWIDLVKKRLHERGWSQSDFAIVLGVSPAMVTRLLKEG
                     HGSDDLKLKVNKKLRISESWESFEEE"
     gene            12851..13057
                     /locus_tag="U1087_000729"
     CDS             12851..13057
                     /locus_tag="U1087_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000808564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755230.1"
                     /translation="MKQFILDCIGDRDDFTITITFSNGDKIDFFQVYDDCSETANAID
                     LVEVGTDFRHLVNLDYVVHVRLNV"
     gene            complement(13069..13269)
                     /locus_tag="U1087_000730"
     CDS             complement(13069..13269)
                     /locus_tag="U1087_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001003192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755231.1"
                     /translation="MEEIIERHFENMVDEILLSSETYEEAISSLKKISVLGIHQPGSL
                     IKSLEIAIKRRACQQKTPNHKD"
     gene            complement(13433..13699)
                     /locus_tag="U1087_000731"
                     /pseudo
     CDS             complement(13433..13699)
                     /locus_tag="U1087_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011017354.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            13779..13967
                     /locus_tag="U1087_000732"
     CDS             13779..13967
                     /locus_tag="U1087_000732"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755232.1"
                     /translation="MIINPETFALAVVQSSDSALTVVEKLELFKEAYQTAKKHNQPII
                     DAENKQKAESARNFLKNW"
     gene            complement(13942..14127)
                     /locus_tag="U1087_000733"
     CDS             complement(13942..14127)
                     /locus_tag="U1087_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014635531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755233.1"
                     /translation="MDEQETKFLCKLNVMLLDIEQAYEAEKDPLTRCELAKGYLEIGK
                     YLKSMGFITPTNFSKSS"
     gene            14417..14776
                     /locus_tag="U1087_000734"
     CDS             14417..14776
                     /locus_tag="U1087_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009730587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM4755234.1"
                     /translation="MSITFDRIKELAKKQGLSINSLEEKLGYSRNTLYSLKKQNASTD
                     RMQEIADYLNVSLDYLLGRTDNPRIASDEPEKFYFEGKEVDVEHLASTAMRFNGKPLS
                     DEDKKAIQNIIEIYLRK"
     gene            14786..15007
                     /locus_tag="U1087_000735"
     CDS             14786..15007
                     /locus_tag="U1087_000735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HEM4755235.1"
                     /translation="MTTLTLNTTPHQDNLIAEYLKEHNTKLDDLVTEMLLEKLEDEAD
                     LKALRKAQSEDDGTRYTLSEVAKELGFAI"
     gene            14997..15272
                     /locus_tag="U1087_000736"
     CDS             14997..15272
                     /locus_tag="U1087_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002334253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEM4755236.1"
                     /translation="MQYKVNLTKKAVKQLKKLDKHIAREIYNWIVDNLDGCTNPRQHG
                     KGLVGDRSGEWRYRVGNYRIIATIHDDIVTIEVFQIEHRSTVYKLKR"
     gene            15287..15667
                     /locus_tag="U1087_000737"
     CDS             15287..15667
                     /locus_tag="U1087_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000762727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HEM4755237.1"
                     /translation="MTEKELFEEFGVKIEIYENQLFEDEAFYIPELLTMFLSDAIPET
                     KRVQVTLHELGHKGHMPHIYRMFREKCELEANRNMIHHLLKEELEIAEDHTQFNYLVF
                     MEKYKLKTIADETMVKEEYLNLVG"
     gene            15677..16420
                     /locus_tag="U1087_000738"
     CDS             15677..16420
                     /locus_tag="U1087_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011017351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HEM4755238.1"
                     /translation="MNKNQIENLEKLTTSTDKMKQLTEENPNHFKTSRLGQSMTNYST
                     QLEREINGKRRRNRVFPYGTLVYVDFGINFGSEFSAPHYAITLSKEDRKNQNTITVIP
                     LTSKPGYNNLPLEFNLAEALGMLTAQLIEAAEDKVASELVSYFGEYDDFDELMIELEK
                     EGRLDEKERAMNLVQKLSDEVVYAGKRLEKYMSDLEKTTYAKLDAITTIDKVKIFKKV
                     STLDGLGVAQILEPQMKILSDEIKSRYLI"
     gene            16677..17762
                     /locus_tag="U1087_000739"
     CDS             16677..17762
                     /locus_tag="U1087_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019291329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM4755239.1"
                     /translation="MAFYKKLSSGWQYRVSYKDANGKYREKSKKGFKTKSQAQAAAME
                     LELFLKKNTFVNKDQSLLEYYEKWAKIYKKPHVAERTWKKYQQTEKHIKQYFGNTLLK
                     DITPTHYQSIANKFTQKYSQETADNFHYHIQSAVKVAVREKIIDTNFCEGAIVKSNLN
                     RKSVEDKYLEEHEYLHLIDMCKDNIQYHSYFTIYLAAVTGLRFGELLGLRLEDIDKKG
                     QMLHLKQAFDYTFTMDFIPLKSKSSERSVPIDQHTLKLIQAYLKNQKEPNKDNRLIPN
                     ISNAAVNKTIKKIVGRPVTIHSLRHTYASFLIAQGVDLISVSQILGHENLNITLKIYA
                     HQLDKLKEKNNDKIRNIFDNFGRISDE"
BASE COUNT         5239 a         3981 c         3028 g         5531 t
ORIGIN      
        1 tcgattgtag ccaaaaagat tgacccagct gaatttgatc cagtcagcaa accttggatg
       61 aactcatccg aaggtttgtg gccatcacga gggtaggttt catccaaagc ataatcatgc
      121 ttgtttgggt ctgttaagtc cttgaaagga cggataactt tgtaagccat taactacctc
      181 ctttacaaaa cagcgtctgt gtaagtcaca tagaaaccag cgtcagcatc gacaacctct
      241 acatcgaaac ggttagcagt tgctaaatac tgaccataga ttttatcatc ctgccatttc
      301 acagtagttt gggcgcggtc aaataacgtt gcaaactctg tcacatcccc gatgaatgct
      361 ttcatatcac cttttgaagt gccaataaca tcatctggat aaacataaat cacacgacca
      421 gcaaacttgt acccagtagg agaggtaata tccgtctgca acatatatcg accgtcttta
      481 tccttaattt tatccaaagc tgcgaaaaga gactgggtag ctacaatact agcattgtag
      541 tatggtttca attcaatatt taaaatatct ttcaaaccat caagtccaga tgcatttttt
      601 gcagttgctt tcttcaatac tttcgcaatt tcggtgttct tagtgatacg ttcctgattc
      661 attgcctgct tagcgacaag ccccatcaca tcataatcag cgtcatcaat caattcttga
      721 gaaactggca aatgaccacg acgagtttca acctcatatg aaacttttgt gaaggtaggt
      781 tttgctaagt caggattctc agctaactcc tcaatcgtat tcatgacctg gtcagtcaac
      841 ttaatcacag accacttacc gcttgcattg cgtactttaa caacgtttac caaggatgtc
      901 aaatctgtct catcgcgttt agcttcttta ggacgaagca aatcttctgg gattagggcc
      961 tctccttcag tagacttaaa tccgtcacgc atttgcccct tggttcgcaa atagtgatta
     1021 aatgcttcac gagtttcttt gtccatgtct ttcttacctc ctcgactgtc tccatagcgt
     1081 ggagctttgc ggttttgttc atcgatttgc ttttgaaggt cctcgatttc cttttccaat
     1141 tcagcctttt cagcttcttt ggattccagt tctgcttgaa gttcttcaag atctttctca
     1201 acagctgaca cttcttcctc agtctcagca cgttccaact tctctgcttc aagagcagta
     1261 cgtttctgca agtccttgat ggactcttca agttcaacta ctttcgcagc tttagctcgc
     1321 atacgagcac caaaaattag agctttattc ataacttaaa tttctccttt atttcttttt
     1381 ttcgcttatc aagcatttca cgatttgcac gtagttgact ttcaaagtcc ttctgacgtg
     1441 cagcaatttc agtctgtgga tatgctggga aagtacaagg actaacttca aagatttcaa
     1501 ggtctaagat agtgtccagg taagtaccgt catcacgctc taccgtgttg attttgattg
     1561 ggaagaagcc aaaactacaa ccaatcacat ccccacgttg aacacgagca taagcaccga
     1621 ccgcttgtgg gtcatcctta ttgatgataa tatcgccaaa cagaccaaca tcatcaacac
     1681 cgagccgcac tgtttcattt ccagtccgac caagtaccaa actatggtca tggttaaata
     1741 aggcacggat gtcggcatct ttaatagcct tctcaacacc ctcacgctta atcacttcaa
     1801 aataaccagg ccaaagttca gtctcttcat caaacttgat aaagtagcca ctcaaaatca
     1861 aatcgccaga ctcttgttcc tcacgagttt gaaattgcgt ggccatgtaa gacttacgtt
     1921 tctgcatcgg tattccctcc ttccttgttt aatttgctct gattgcctaa ctcaccctgc
     1981 ggcagatagt tttcaagaac aatgatgtca tccatttcag gatcaggagt catgccaacc
     2041 caatctctcc actcattccg acgcatagca gcactgtttg tcatctgttg agcaacagtt
     2101 gacaactctg taatgtcgta agaatagagt gaccgtggat tgaacttgaa atagcgattg
     2161 ctagacacta gcaagtccct tgtcagtgtc tgagtgatcg ttgtagcaat gctcatgatg
     2221 gtggtattga caaagttgtt gtattcttct ttgttgaagt ctccaacacc caggataaaa
     2281 gctggcactc ccaaaagtcc agccactgtt ttcttgtcaa tctcaaccga ttcattgaga
     2341 gcgatgtcgt tcagattcaa tggtttgact tgctcaactt ccataagagc atcaggtata
     2401 atccacggct ctcctgactg gctagtggat agatacttct tagcaatcct gtcacggcct
     2461 tcttgactgc ccaactcatc actggatgaa tcgaccttga caatcaagct cggaacattc
     2521 ttgccactca taaagccttt cttggtctga gtagccaagt ttaggttgcg gacaatgtcc
     2581 ttcaaagcca gccgataccc tgttccgaca taagggctgt ctggatcagg attgattgca
     2641 aagtggacaa catcatctgg ctcgtattct ctacccttgt agcaaatcac gtagtctaaa
     2701 tcattggact taaaagagac ctcatccatc gggaagggtc tcaagttcaa aatatagtct
     2761 gtcacagggt catattcgac atgaaggaca gaattaccgt cgccatatag caacaagtca
     2821 cgcacaatct tgaaaatcca agtctttctg gtcatgtgtg cacaaggatt gatgtcaatc
     2881 ttccgagcca agccgtcctt gatacgaata tcacccttgt ctgtattctc catcagatgt
     2941 atggtcatat tcgacaccat atcagcaatc ttgttgacag ccaatatcac atcaggattc
     3001 ctagcaagtg gcacataacc atcaccctca aagataattc caaaatccga gtgactaagc
     3061 atactcaccg ttgactgcga cttgctcctc ttacggaacc tatcaaagaa acccattctt
     3121 tctcacctcc tttctaccgt gcagctcctt gaaagagtga attaaagggc atatttctta
     3181 caatgtcctg actgacatcg actatctctt tatcccactt gatgacctca gctctgaggt
     3241 cttttctgta tgactcacga accaaaatct cctcaccttc aagcattact cttacttttc
     3301 ctttgttgat taacactttg atgtcgtgtt cagataaaac aatttctctc atggtccacc
     3361 taatcaaaga attccatcac actctggttc ttgccgagat tagcaagagc ctggatacat
     3421 gcaaagacac tggcatcaaa taagtcaatc cttgctgtac caccgtcacc gtctaatttc
     3481 tcatattgca ccgcatcatc caccttctca atcgctctga cattgctgac acagtattca
     3541 taggcctcag aatgaagata gtaaaattct ctattcttaa ccttgaactc aatccgtctg
     3601 aagccttctg atttcagata gaaaagctgt ggctggtcaa tcatcttgaa cttagccttt
     3661 ttcattttac tcaaaaactc acgaccaaac tttctatcca taccgacagc agcaatcttg
     3721 aagcctttct gcctcatctc gatgaaccat ttgacaatat catcatagag aacagtcggc
     3781 gtgttactca tggtcagcca accgtctgac tgccaaccaa agagcggaat gccgtcatca
     3841 ttagctttct tctgagcatt gacgcgaggg aagaaagcgt gagtgataca gatgtcaatg
     3901 tctttctcac cgtcattgta gatgccatag agtgcagcag cggtcaagtc atgcaagcgg
     3961 gacaagtccg ccccaccata ccacttaatc ggcaagcgtg ccagctcttc caagctccaa
     4021 tcataacaat catcactagc gataaactca tcaggattga aataggcatt catagagtta
     4081 gtaaagacat tcaaagtctt attgaaaaac tcattccttg tctgaggatc gttcattgct
     4141 tgttcagctt cagctctcaa ggctggcatg gacaccgtga caccccatga agggttagcc
     4201 atcttcaaaa cattgtcatc cagatagtct ccaacatctc catccgtcgt ctggttagcc
     4261 ttgcagataa aaatgaatag cgattcatca ctgattaact gcttgaggac cttctgacag
     4321 tatttcagcc tgttagcaag gaatcctgtt ggaatatccc cagctgtaga gataacaaaa
     4381 agcatactgt ttcggtatgc tgacattgtt ttcttcatga gaccatactt cttggaattt
     4441 cgcatggtgt gggcctcatc aataacggtg acgttgccat tcagagagtc caagcgactc
     4501 tcatcattgg ccaaggcttg tatataaaac gaaccatcat ctccaaagtt agctgtgatg
     4561 gagtgttcct ggttgttatc cttgatacga atagacttgt cattccaacg ctccacgttg
     4621 aacttgataa agttgaatgc ttccaaggcc tgcttgactg aatttgccac aatgtagcat
     4681 tttgacccac tatcagcatc caaaatctga taaagcagag caatagcagc agtaaaactg
     4741 gtcttaccgt ttttgcgtgc cagcattatc aaggcttcct tgaacctacg ctcatttgtc
     4801 ccagcgtgat agaaaccaaa gaggttgaca actgtgaagt gttgccacgg ttgcaaaatc
     4861 aaaggcttgt tacggataga catggcatac atgtcatctc cttgctggtg gactatagag
     4921 ttctcgatga agtgaacagc aaagtccact atatcctcat caagttcata ggctggattt
     4981 tctaaatccc tcagaaagcg ttcaacagcc aaaatccgtt cttcgttatg ttcctcttga
     5041 tagctcagga cataatcaac ataggcttta gcttttccaa gattggttgt agcatggcga
     5101 aaatcggcaa aacgtttttc aaagtcttta tccatctttc acccgcttct ttttcagttc
     5161 atccttgagc ttcatcacct ctgttagtgg cgagcctttg tcttgttcga ccacctcacc
     5221 caatgatttt gggttaagca taagctggtt tgaatagctc aagatgtctt ttctgagtat
     5281 ttccattgca gtcaagattg gaactttacg ctcattctca gcaccagctt tgttgacata
     5341 gacatctgtg acaggatagc ccatgtcagc atagtcttga gctagtttct ggtactgaaa
     5401 caacatccca gcaaagatat caatgatcat ttcaaattct tttcgatagg tgcccaagtc
     5461 tttcatttgc ttgaccactt ttgacttgat tgacttcact gtaattggtt tagccaaaaa
     5521 ctaaccccct ttctacaaaa tcgctgagtt tttaccccct ttttgtctga cggctcccga
     5581 cttggaaaaa gttcccttca ccggttccca ggacgctcaa gaatatttca aaaagtgggg
     5641 gggtatccat aaaatttttg aaattccttc tttctctttt tttgccaata aattccctgg
     5701 ccgacaacct tattattgac tctatcatga aatgtattat gtttgcgatt ggttaacgct
     5761 aaacaattcc attctacgaa ttcaagctca ggatattcag acacaggaaa gatatgatga
     5821 atcatttcag ctggtaccga caaaccgtac ctcaaacttt cttgacatag gtagtcagac
     5881 ttcctcatca tcttgtctcg gaacttttcc cacttcttag tcttcaagga ttgtctgact
     5941 ggcttgtaat aatgtgccat acgctcctcc ttgtcaatac aaaaaggaca agtcaacgac
     6001 ctgtccctct catacaagaa atctatggta ccataataaa ctctttttcg tgagaaaaca
     6061 agtacccttt tttctcattt tgaatcttag aaaaaagttt cccgcctaac aagaattgat
     6121 gtcaccaata aattataata tgtctttatc actgtgtttt gatatccgac tatttcaaaa
     6181 ccaattcctg gattattttt gatgtcattg tttaactggt cgatagcgtt caatccatgt
     6241 tgtctatcac gatattcttt tatcattctg tacctccaaa aactatacca atttgcccct
     6301 tgagtttgtc atactgtata ttctgttaaa ctcagcgaaa gcccttggat tgttgatata
     6361 attgcacctg ttaagatttt tatttttaag tttgacaact tttcaatatg acaaacttag
     6421 tagctaaaaa ataaaaagag tcagatttta aacttagcca tattcttctt gaaagtgact
     6481 tgtttgtctc cgatgtaaat aagcgtagtt cgttctgacg agtggttgaa tattgtcatt
     6541 aaatcgttaa ctccatcaaa tttctggtaa tagaaaaaac caaatgtctt tctgattgag
     6601 tgtgcagcta tgttgtcgat atctagctct gtggcaacgt gcttcagtat ctggtcgaat
     6661 cgctgtctgc tgattggctt attcttccct tgtctgctct taaatacaaa gtgattaaga
     6721 ggtttccctt taacgaaagc acgcatggat tttttgagtt ctggagtcat tctgacttca
     6781 cgtagtttct gggtctttct ttccctgagc tttatatccc aaccttgcac atcccttact
     6841 cttatgttca ggatatctgt gattctgtat ccagtataca aagctgtttc aaagagtagg
     6901 taatacatct cattccattc tctcaaataa tcttcgattt catggataac atctctgtcg
     6961 gtaattggat ccattctgtt catgttctca cctcctttca gctaaacgaa aaagccagcc
     7021 ttaatgactg acttgctata acttctgttg aaacaactct ttctttaaaa attaaggata
     7081 tctcccagaa tgttgactgc gttttgtttc cagaagttca tgctacaata ataaatcgtt
     7141 ttctgtgaga atacaaggta ctttttttct cattttacaa ctcacccttc aatattgcgt
     7201 attgctccaa aatgattctt ctacgacggt agacggtagc acggctcatg aacttctggt
     7261 ctgcaatttc ttcccagcgt aattgtgggt actgccagcg tagattaaag atttccttgt
     7321 cttcgtcgat taggttagca agtagcttgt ccacaatctc cttgaaacct tccaagaact
     7381 tcaatgtcgg atcatctgcg agcttgacag cgatggtttc tgtaggtttg ctgattccga
     7441 ttgaaggacc gccttggctg tctggatttc ttgttgtcaa ctccagtctt cgtaaatcta
     7501 tggttcgctg gatacctcgg aacttgaaca attcctcgtc tagcgttttg agttctctgt
     7561 cgctcagttt cttcaattgt cacctccaaa ttcttgaaaa atgccactaa gacatcaaaa
     7621 atataagcaa tggtttttcc tgttttccta attgcaatag ttacagtatt ccggacctct
     7681 tcaaactgtt caggagttag ctgagccaat tcttgagcta gtctttcttg ctcacgctgt
     7741 aaagcctgct tagctttctt tttcttgatt ctcttgttca tgcgtaacct caagatgttc
     7801 ttttcatcac attctcttta aagtcatcaa tttcttgcgt gacctttttt aaaagatttt
     7861 gttcaaccat tacatcatgt tcgctagcac cttccctttt gatgtagtgc tgcaaagcat
     7921 gtttaacaat ttgcatttgc ttgtacttca aatacatgcc ttcgccctcc attttctagt
     7981 attagccctt ttcttggctg ttactctagc catttcgtcc cagacatagt cggcattttc
     8041 aagcatgagg tccacgcatt tgtcttttag ggtctcgatt tcaatttctt gtcgctcgat
     8101 gtctttgtat gcacggttgt aaagttcatc tttcaggaac tcattttctt tgagcaactg
     8161 aactacatca atttcaatct tacatccata atctggtaac aatctaattc catttaaact
     8221 catttaatac ctcctgtaat ttttttaaag tgatttttac ataaatccat gccatgaaat
     8281 ctgtttgagc aactgtcaca gagcagctta tcacaagtaa gaaaccttgg ttgctgattt
     8341 ttaaataaac tgaaacttcg atagaatgtt attcctgtct gaccaattat aaaatcacac
     8401 aactttgttg ctcttctctt gtagcattca tggcatatat catgtttcgg tatgaattgg
     8461 acaacgttgg tcgtcatcta acacctccat atcaaatcca ctatcaataa atctatacgt
     8521 caattctgga ttgattccat tgcctaatct ttgataaatc aaaaccatat cttcatctga
     8581 aaaaagtgtt cctaggtaac gattaagaaa atttttggta aattctctaa aaagacaatt
     8641 ccgtttctca cttttaaatg gttgcccttt tgcaattgtc ctactgcacc acatcaataa
     8701 ttttgcaatg atgtctcttc gtgactctac tccttccaaa ctaaaatacg tgtttgtttt
     8761 tggaatcagt atcacttcca aattcgcatt tatatatgac atcggaaata agccgagcag
     8821 ttcttttagt tcattcatta gttcagtatt catttcttcc cctaacattc gtaattatag
     8881 gcaaaatata gattttcgcc tatcggatag taataaacgc catgaaaatc atcgccagct
     8941 tgtacattca gtcctccacc tctataattt taaaattccc atgcagatac aactgctttg
     9001 tcattacgac accaacctgc caatttgcgt accgaaaggc ctgacgctca ttgccataga
     9061 aaatttccaa accagttgtc gaatgcctca catcacggac aaaaggattg tcttgcttaa
     9121 gaccgtgttt cagaatgacc cgttttacct tgtctaatcc ttccataagt tcatagcctc
     9181 caaaaattca ggcgaaacat caacattctt aggcagttcc tgttcttgtt gcctagctcg
     9241 aacgagttct actgtcagta acttatcatt cttccaattt cgtaaaatcg ctttgatata
     9301 attccataca ggtttattgc gaaatacccc ttctttaaga gcttccctta ttaattcagg
     9361 gctaagccct tcttcagtag caaatttctg gatgtcctca atttcaaatg gacttaataa
     9421 tcttccaaag ccagcttcga aatctttgaa taattgcttg attgaataat cgctattatt
     9481 tatacaacta ctactagata agtttgtatc tatatctttc tcttgttctt tctctttctc
     9541 tccgttacca tttgttacat cactgttact ttgtaacacc ttttgattct cacgatgctt
     9601 gcgaacccta cgggcacttg cagtttcact acctaccatc tctgggactt gctccaaaaa
     9661 atactcccta tccgatattt ttgacaacag ttttttggac tgtaaaaaaa caagggtaat
     9721 ttttacattt tccacatctt cgtcaattac cagcgcaatt tcttcagcca agttatcagc
     9781 gaccccgtca aaaaatagaa tcccgttatc ttccaggctc aacagcatca tcttaagata
     9841 gataatcgtg tgagtgtccc ctcctgctat ttttcgaagc aacttcattt ccttggattt
     9901 gaagaaatcc tgtgcgagtt gaatccaata gtaccgctta tttgcatttg ccaatctcta
     9961 tacctccatt ctcctcccac atctcagcat ttacatcttt attaaacaag tcctgctgat
    10021 aaattctagc cttctgccag gtatcaaatg accgtttttg gtaaaatcta taaccacgct
    10081 tggtcttggt tttcttcgcc acaatccaga ccatagctag acctccctat ctgctaatag
    10141 ctcagcttgg catctgttaa ccttctctaa atactcaatc cgtctattta actcttggat
    10201 tagcctagct ttaccaacac attcctgttc tttcaggtct gccaacttct taaattcctt
    10261 gaccctatac ctttcgtatg ccaattcacg ttctagctcg tgctgatctt gaggaatgta
    10321 gtcatcatcc tcaacactca aaaacttttt catcatgtcc caaaatttca ttctatcctc
    10381 cgtaatatct gtggatttga agatatctca aattccgttc tggttgtttt tcttccacaa
    10441 ttggttcttt gacctcaatt tcaatctcaa caggctttcg gatcagccag attaagatta
    10501 tggtcaaaat agcaataagt gccaaacctt gttcagttgt caacatcaat tcttctgtca
    10561 tatcgctgtc ctctgccaat tattgtggta ccattctatg acggcatcac gagggtactt
    10621 ctcgcgagca ttcggaatcc gtgggaaatc tttgtgacaa ttaaaacgtg catcaaaact
    10681 ccctgtatcc tttgttccta agagcatttc cgcacattgt gacttattga gttccattgg
    10741 gtatcgtcgt ttttcgtcca tgacaacgtg catgaccttt aatgctctat ccattagccc
    10801 agcttcaaac tggtccaaca tttgaatcat tagatcattc atgatataat cctcttgtaa
    10861 tatttatttg tgagcctgat tgccgtcagg cttttttgcg ttttacaatt cataagcatt
    10921 catctccaaa atcttcattt tggtatttgt gcttggttcc cacgtcatcc aataggacaa
    10981 tgccgcatca gcaaatttct ttggcaacat atcatagcga ttgatgttga aatggtcttt
    11041 aaaatcaacc tcagcttgtc gaaagaccga ctgtgcaaag actttatcag cataggcagg
    11101 actgtccatt ccacctagac aagcgacgac acgagctttt ctcttcttca gcaaggcttg
    11161 agcaaagcta ggatgaattg gttgctcatt tttcagataa tcaacatctt gagccaatgc
    11221 caactgctgc tctttcagtt tcttctgccc agtaaataga gcgataaaag cctcatcaga
    11281 taaattttct ggcacataag ctccctgctg acgaatctga ggcaatacct cacttgtgac
    11341 ccaacgtttg aattcttttg cctggggcaa cttactggat aaaataagtg agtaaagacc
    11401 tgattcgttg atgataatca tttcacgatt ctgacctgac tgaacgattt gttctgtcag
    11461 cttatcttcg aaatcaacat gatctcgaat tgctttctgt ggattttgat agcctaaaat
    11521 gtcagctaca tcttttccaa caaaccaagg ctcgttgtta atggttacag tacggacttc
    11581 ttgcccgtga aaaacaaaaa tttcgttcat aaaattcctt tctaatttgg tataataaaa
    11641 ataaaaacga tcggagaatt ttcatggatt atgctatctt tattcaacct gctatcagta
    11701 tcgtagtagc aatcatttca ggtgtttggt catatcttgc ttctagggca aataataaga
    11761 ccgagattga aaaacaagcc aaagagcatg ctcatgccgt agaaaaactc gaaaaagagt
    11821 ttcagtatca gctcagtaca ctcaaacagc aacactctct tgaaattgaa aaattaaaac
    11881 aatcacacga gttaaggttg caagaacttg aaaaagtttc cagtcttgac gctgaaaagg
    11941 ataaagctct gaaattaaat gaatttgcat tcaaagcact aactggcgaa gttgatcttg
    12001 ataaagcact tgcagtaaat gacaaagtga acgcttataa tcgaaaacaa tcacttcagg
    12061 agcagttcat tcagaaaacc tctaagaaat cataaatcga actcttgtct aatcctatct
    12121 atctctttat catgccgatt ttgatattct tttatgcgtt tttgcctgtc tctcttagct
    12181 aagaaatagg ttccaaaacc aataaataaa ttgataaaaa ttacaaagta aaaccaaatt
    12241 aaaaaattca caccattccc ctccttattt ctccaagtgc caacacagtc tcccacacat
    12301 ctagcccctc gaggctatca actatcagtt gactgagttg gtagtttttc ttttgccagt
    12361 tctggattag tttgctagtc atcttcttcc accacattct gcacttccac aacctctaca
    12421 tgagcctgct tgactatcaa atctttagaa gcacagtagc gaattaagat gctcactgcc
    12481 tcgccaattt tcaaatcatg ctcattagca aaatctacaa cgtattcata cgcgtccgat
    12541 tcgatacgga ctactttttc agctattttc atgtttctac tcctcctcaa aactttccca
    12601 actctcagaa atcctgagtt tcttgtttac tttcaacttg aggtcatcgc taccatgccc
    12661 ctctttcagc aaacgagtaa ccatggctgg tgaaacacca agcacaatcg caaaatccga
    12721 ctgcgaccaa ccacgttcgt gtagtcgctt tttaaccaaa tcaatccatt tttgatgttg
    12781 ttgactcata ttttcccttt ctatttttgg tataattgac ttgaaatctt taatgaaagg
    12841 aggacaagtc atgaaacaat ttattctcga ttgtattggt gaccgtgatg attttacaat
    12901 cacaatcact ttctcaaacg gagacaagat tgactttttc caagtctatg acgactgctc
    12961 tgaaactgct aatgccatag accttgttga agtcggaaca gatttccgtc atctagtcaa
    13021 tcttgactac gttgttcacg ttcggctgaa cgtttgattt cttgacacct aatccttgtg
    13081 gttaggtgtt ttttgctgac aagccctacg cttaattgcg atttctaaac ttttgataag
    13141 actccctggc tgatgaatac ctaggaccga aatctttttc aagcttgaaa tagcttcttc
    13201 ataggtttct gacgaaagca aaatctcatc aaccatattc tcgaaatgtc tttcaatgat
    13261 ttcttccatc cctctctcct ttctaatttt gcattgcaac agaaggaaac actcattgct
    13321 gtcacagcct acactacttc tcttgagctg ttgaaagagt atcatgaatg gctgaaccaa
    13381 tagcctggac attttttgag cttagtggta aaacgccagc ctctttaatt tcatctccca
    13441 gcacaatctt gtgttgggac ttttcattgt caatataggc acttgccatt tttctaactc
    13501 gacttgcaac catctcgcaa atcgtggctg tttctactgg aagatctgga tacttatcaa
    13561 aatgaaacgt acgagtttcc aattcggaca agttatcaca ctccttcaaa agttccagaa
    13621 atgccgattc agcaatggta tcaataagtt tgacagttgt ttcaatggca ggtaaaaaat
    13681 ctgttgtgag ttttttcatt cccttctcct ttctattctt gttcccctcc ccaatccatg
    13741 ctataattta gctatcaaca cggaaaggag ggaaagctat gattatcaat ccagaaacat
    13801 tcgctctggc tgttgtccag tcttctgatt cagcgttgac agtggttgaa aaacttgaat
    13861 tattcaaaga agcttatcaa actgccaaaa aacacaatca accaattatt gatgctgaaa
    13921 ataaacagaa agcagagtcc gctaggaact ttttgaaaaa ttggtaggcg taatgaaacc
    13981 catacttttc aaatactttc caatttctag atacccttta gcaagttcgc accttgttag
    14041 agggtctttt tccgcttcgt aagcctgttc aatgtccaat agcattacat ttagcttgca
    14101 aagaaatttt gtttcttgtt cgtccatccc cttctccttt cttttttata aaatagttaa
    14161 aaagttagta aaacccttga catttttaaa taaatcattt aaaatcaaag cataaagaaa
    14221 acgcttgata aaacccaatt caatcaatac attctgctcg ccaaagcttt tattttttga
    14281 attagttttt acttgtgtac ttactaactc tttaacttac aagaattatt ttaaattatt
    14341 tgcttaactt tgtcaactgt tttaaccgaa taatttaaat attttttgtc aatctcttag
    14401 aaaggttgat gtatcaatgt ctataacatt tgatagaata aaagagcttg ctaaaaaaca
    14461 aggtctttca attaactcac tagaagagaa actgggctat agtagaaata cactgtattc
    14521 gctgaaaaaa caaaatgcca gtacagacag aatgcaagaa attgccgact accttaatgt
    14581 ttctctagac tacctgctcg gacggacaga caacccacgg attgccagcg atgagcctga
    14641 aaagttttac tttgaaggaa aggaagttga tgttgagcac ttagctagca cagccatgcg
    14701 attcaacggt aagcctctat ctgatgaaga taagaaagca attcagaaca tcatcgaaat
    14761 ttatttaaga aagtgaggaa aagtgatgac aactttaaca ctaaatacaa caccacatca
    14821 agataacttg attgcggagt acctcaaaga acataacacc aaactagatg acttagtgac
    14881 agaaatgctc ctggaaaaac tagaagacga agccgacctc aaagccttac gaaaggcaca
    14941 atcagaagac gatggcacac gctacaccct atcagaagtc gcaaaggagt taggctttgc
    15001 aatataaggt aaacctgacc aaaaaagctg tcaaacagct caaaaaacta gataagcata
    15061 tcgcaagaga aatctataat tggattgtag ataacctaga cggctgcact aacccacgac
    15121 aacacggaaa aggtttagtt ggcgaccgct caggagaatg gcgttaccgt gtcggaaact
    15181 accgtattat cgcaactatc cacgatgata ttgtcaccat cgaagttttt caaatcgaac
    15241 accgtagcac cgtttataaa ctaaaacgat aaaggattga ttgcccgtga cagagaaaga
    15301 actttttgaa gagtttgggg taaaaattga aatctatgaa aatcagttat ttgaggatga
    15361 agctttctat atccccgaat tactgactat gttcttaagt gatgcaatcc ctgaaacaaa
    15421 gagagtgcaa gtcactctac acgaacttgg ccacaaagga catatgccac acatttatag
    15481 gatgttccgt gaaaaatgtg aactagaagc caacagaaac atgatacatc accttttgaa
    15541 agaagaatta gaaattgctg aggaccacac tcaattcaat tacctggtct ttatggaaaa
    15601 gtacaaatta aagaccatag ctgatgagac tatggtcaag gaagagtatt taaatttagt
    15661 tggataaaaa ataaagatga ataaaaatca aatagaaaat cttgaaaaac tgacaacttc
    15721 aaccgataag atgaaacagc taaccgagga gaatcctaat cactttaaga cttcccggct
    15781 aggtcaaagc atgacaaatt acagcactca gcttgaacgt gaaataaacg ggaaacgtcg
    15841 tagaaatagg gtcttcccct atggaacact tgtctatgtt gattttggta taaactttgg
    15901 ctctgaattt tcagcaccac attatgcgat tacactcagc aaagaagatc gcaagaacca
    15961 gaatactatc actgtgattc cacttacatc caaaccaggt tacaacaacc taccattaga
    16021 gttcaattta gctgaagctc ttggtatgct aaccgcacaa ctcattgagg cagcggaaga
    16081 caaggttgca agcgagttag tatcttattt cggagaatat gatgattttg atgagttaat
    16141 gatagagttg gaaaaagaag gccgattaga tgaaaaagaa cgagcaatga accttgttca
    16201 aaaattatcg gatgaagttg tttatgctgg caaaagactt gagaagtata tgtctgactt
    16261 agaaaaaacg acctatgcca aactcgatgc gattacaact attgacaaag ttaaaatatt
    16321 caagaaagta agcacattgg atggactggg tgtcgctcaa attttagaac cacaaatgaa
    16381 aattttaagc gatgaaataa aatcacgcta tcttatttga caatttcaca gtattttgat
    16441 aatatatagt tactaaccta ggagttttcc tagtgcaaat actctggttg gcacaagctg
    16501 ccaccgaccg agcggtaact attcatagtt gccgctttta ttttacaaca gacaaaaaag
    16561 ccctacgctc aactttggac ggtagaagcg taaggcgaat taagtatagt aaaaacctgc
    16621 tttgcagtag gtctctttac tatacccatt ttatcagaaa atgaggtaaa aaacaaatgg
    16681 cattctataa aaagctttca tctggttggc agtatcgtgt ttcctataaa gatgccaatg
    16741 gaaaataccg tgagaagtct aaaaaaggtt ttaagactaa atcacaagct caagcggctg
    16801 ccatggaatt agaactgttc ttaaagaaaa acacattcgt caacaaagac cagagtctct
    16861 tagaatacta cgaaaaatgg gctaaaatct ataaaaagcc tcacgttgct gaaagaacct
    16921 ggaagaagta ccagcagacc gaaaaacata taaagcagta ttttggaaat acacttctta
    16981 aagacatcac acctacccac taccaaagta ttgctaacaa gtttacacaa aaatattcgc
    17041 aggaaacggc tgacaatttc cactatcata tccaatcggc tgtcaaggtt gctgtccgtg
    17101 aaaaaatcat tgataccaat ttctgtgagg gggctatcgt caaatcgaat ctaaatagaa
    17161 agtccgttga ggacaagtat ctggaagagc atgagtatct acacttgatt gacatgtgta
    17221 aagacaatat ccaataccat tcctatttta caatctacct tgcagcagtg accggtttac
    17281 gctttgggga gcttcttggt ttacggctag aagatattga caaaaaagga caaatgctgc
    17341 atctcaagca agcctttgat tataccttta ctatggattt tataccccta aagtccaaaa
    17401 gttcagaacg ttctgtccct attgatcagc atactctaaa acttattcaa gcatatctaa
    17461 aaaatcaaaa agagccaaat aaggacaaca gactgattcc aaatatcagc aatgcggcag
    17521 tcaataaaac gattaagaaa attgtgggca gacccgtcac tatccactcg ctccgacaca
    17581 cttatgctag tttcctgatt gctcaaggtg tggacttgat atccgtctct caaatcctag
    17641 ggcatgaaaa tctcaatatt acacttaaaa tatatgctca ccagctggac aagctgaaag
    17701 agaagaacaa cgacaaaatt cggaacatct ttgataattt cggacgaatt tcggacgaat
    17761 agccgaaaac ccttgatac
//
LOCUS       DASFRC010000031        17742 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.031, whole genome shotgun sequence.
ACCESSION   DASFRC010000031 DASFRC010000000
VERSION     DASFRC010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 17742)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17742)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17742
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.031"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(218..1597)
                     /locus_tag="U1087_000740"
     CDS             complement(218..1597)
                     /locus_tag="U1087_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEM4755240.1"
                     /translation="MPKRIRKLVYTDKFSFFIRYFAVFTLIFGLMTAIIFQLMRSTMY
                     QNSDNTLKRIKKEPALAVGFAIARTYEPNSVFILQDSPTGEETTSSSSDSMPVPKNQK
                     NTRAGDQLRLGANTHVLLYSKSGEMINPDTFTGLADLSLDKEKLGEIKETTVESSFGM
                     SEDYRYITIGLATDELGYYSSYDIKYATILVNVSQIKSSIESYEATVAIVMVSAWLIS
                     ILASIYLSNLSMRPILISYQKQKDFVENASHELRTPLAVLQNRLESLFRHPETTILES
                     SESIGSSLEEVRNMRLLTTNLLNLARRDDGLKVDMIDVQPNYFDEIFANYLMIAEENG
                     KTLTVNNLIHQPIRTDKVLIKQLLTILFDNAMKYTDEDGTIQIAANIKDKLVCFTVID
                     NGLGISDTDKKKIFDRFYRVDKARTRQKGGFGLGLSLAQQIIKNLDGEISVRDNQPKG
                     TIFEVRLPK"
     gene            complement(1590..2261)
                     /locus_tag="U1087_000741"
     CDS             complement(1590..2261)
                     /locus_tag="U1087_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019320695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM4755241.1"
                     /translation="MIKILLVEDDLSLSNSVFDFLDDFADVMQVFDGEEGVYEAETGV
                     YDLILLDLMLPEKDGFQVLKELREKGVTTPVLITTAKESLEDKGHGFELGADDYLTKP
                     FYLEELKMRIQALLKRAGKFNENTLTYGDVTVDLSTNSTTVNGEEVELLGKEFDLLVY
                     FLQNQNVILPKTQIFDRIWGFDSDTTISVVEVYVSKIRKKLKGTTFGENLQTLRSVGY
                     ILKNA"
     gene            complement(2455..2790)
                     /locus_tag="U1087_000742"
                     /pseudo
     CDS             complement(2455..2790)
                     /locus_tag="U1087_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027076.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(2956..3612)
                     /gene="phoU"
                     /locus_tag="U1087_000743"
     CDS             complement(2956..3612)
                     /gene="phoU"
                     /locus_tag="U1087_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000946475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HEM4755242.1"
                     /translation="MLRAQFEEELGKLNNQFYAMGNEVLAQINNAVRAFTTHDRELAK
                     EVIEADKKINAFEVKLEKKSLEIIALQQPVSTDLRRVITVLKATSDLERMGDHAVSVA
                     KAAIRMKGEVRIPVVEEEIKKMGREVRQLVEETLELYLGDADMERAYEVAARDEVVNE
                     FYSTIQELTTEEIKKNPESLVAGRDYYQVLTYLERVGDYAKNICEWVVYLRTGDITEL
                     "
     gene            complement(3641..4399)
                     /gene="pstB"
                     /locus_tag="U1087_000744"
     CDS             complement(3641..4399)
                     /gene="pstB"
                     /locus_tag="U1087_000744"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014294590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HEM4755243.1"
                     /translation="MTSPILQVKDLSVYYNKKKALNNVSIDFYPNEITALIGPSGSGK
                     STLLRSINRMGDLNPEVTLTGAIDYNGKNIYSPRTDTVDLRKEIGMVFQQPNPFPMSI
                     YENVVYGLRINGIKDKQVLDEAVERSLIGASIWNEVKDRLHDSAVGLSGGQQQRVCVA
                     RVLATSPKIILLDEPTSALDPISAGKIEDTLYGLKDKYTMVLVTRSMQQASRISDRTG
                     FFLDGDLIEYNLTKEMFLNPANKETEDYITGKFG"
     gene            complement(4411..5214)
                     /gene="pstB"
                     /locus_tag="U1087_000745"
     CDS             complement(4411..5214)
                     /gene="pstB"
                     /locus_tag="U1087_000745"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000852852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HEM4755244.1"
                     /translation="MADYNWNERHIITFPEENIALSTKDVHVYYGKNEAIKGIDMQFE
                     KNKITALIGPSGCGKSTYLRSLNRMNDTIDIAKVTGQILYEGIDINRPDMNVYEIRKH
                     IGMVFQRPNPFAKSIYRNITFAHERAGVKDKQVLDEIVETSLKQAALWDQVKDDLHKS
                     AFTLSGGQQQRLCIARAISVKPQILLMDEPASALDPIATMQLEETMFELKKDYTIIIV
                     THNMQQAARASDYTAFFYLGDLIEYDKTANVFQNAKLKSTSDYVSGHFG"
     gene            complement(5239..6126)
                     /gene="pstA"
                     /locus_tag="U1087_000746"
     CDS             complement(5239..6126)
                     /gene="pstA"
                     /locus_tag="U1087_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019316415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HEM4755245.1"
                     /translation="MHAKKFDKLATGILYSIAGVIVVILTSLILYILLRGLPHVSWDF
                     LTSKSSSYKAGGGIGIQLYNSFFLLVVTLLISVPLSTGAGIYLAEYAKKGPLTNFIRT
                     CIEILSSLPSVVVGLFGYLIFVVQFEYGFSILSGALALTVFNLPQMTRNVEDSLRHVH
                     HTQREAGLSLGLSRWETVLHVVIPEALPGIVTGIVLASGRIFGEAAALIYTAGQSAPA
                     LDWSNWNPLSVTSPISIFRQSETLAVHIWKVNSEGTIPDATQVSAGSAAILLVFILIF
                     NFSARYIGKKLHAKMTSAA"
     gene            complement(6116..7033)
                     /gene="pstC"
                     /locus_tag="U1087_000747"
     CDS             complement(6116..7033)
                     /gene="pstC"
                     /locus_tag="U1087_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018378778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HEM4755246.1"
                     /translation="MKNEQLAKELSSPSKNSLLEKFGKVITFLCLSLIVFIVAMILIF
                     VAQRGLSTFFVDGVSITDFLFGSKWEPSSKIFGALPMISGSFIVTILSAVVATPIAIG
                     AAVFMTEISPKRGAKILQPVIELLVGIPSVVYGFIGLQVVVPFVRSIFGGTGFGILSG
                     VFVLFVMILPTVTFMTVDSLRAVPRHYREASLAMGATRWQTIWRVILNAAKPGIFTAV
                     IFGMARAFGEALAIQMVVGNSAVIPTSLTTPAATLTSVLTMGIGNTVMGTVQNNVLWS
                     LALVLLLMSLIFNMIMKFITREGKKNYAR"
     gene            complement(7036..7905)
                     /locus_tag="U1087_000748"
     CDS             complement(7036..7905)
                     /locus_tag="U1087_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS family protein"
                     /protein_id="HEM4755247.1"
                     /translation="MKKKQKLGIAALFLLSSMALSGCSSWIDRGESITAVGSTALQPL
                     VEAAADEFGSVNIGKSINVQGGGSGTGLSQVQSGAVQIGNSDVFAEEKEGIDASKLVD
                     HQVAVAGLAVIVNEKVTVDNITTEDLRKIFTGEITNWKELGGKDLEISIINRAASSGS
                     RATFDSVIMDGQTAAQSQEQDSNGMVKSIVAQTPGAISYLSFAYLDDSVKTIKLNGFE
                     PTAENVATNDWPIWSYEHMYTMGNATDLTEEFLDYMMSDEVQDGIVESMGYISINDMK
                     VVKSADGTVSEKE"
     gene            complement(8043..9344)
                     /locus_tag="U1087_000749"
     CDS             complement(8043..9344)
                     /locus_tag="U1087_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmF rRNA methyltransferase first C-terminal
                     domain-containing protein"
                     /protein_id="HEM4755248.1"
                     /translation="MQLPQDFIDKYNHLLGSEAQAFFESFDEPAISGFRVNPLKENQL
                     DFEQLIPDMPWSYYGKVSGKSPEHVTGLVYSQEPAAQVVGQIAAPEKGMKVLDLAAAP
                     GGKSTHLLSYLENTGLLVSNEISNKRAKILAENIERFGARNVVVTNESADRLAKVFPG
                     YFDMIVLDAPCSGEGMFRKDPDAIQYWSKHYPAQCASLQREILESALNMLAPGGQLIY
                     STCTWSPEENEEVVTWLLEQYDLELIDIPKINGMAEGIGYPQTARMYPHHFAGEGQFV
                     AKFRFLGEASQKKLKPGKSNLNREQQSLWKEFEQKHLRVQLDGLLQVFGDNLYLLPHG
                     LPDLSKVKIARNGLHLGTFKKKRFEPSFALGLALHSSEVKNRVEISSEEFSSYTAGHT
                     IAVSKDLANGWYQVAVQGNGLGFAKIVSGTLKNGFPKGLRF"
     gene            complement(9344..10102)
                     /locus_tag="U1087_000750"
     CDS             complement(9344..10102)
                     /locus_tag="U1087_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HEM4755249.1"
                     /translation="METKYHFAQTIVLEAGNFLRQHLHDDLQIEEKGDFTDLVTHLDK
                     QVQEMLTQQIQSRYQGDGILGEEGGDVSSIHEGNVWVIDPIDGTTNFIAQKTDFAIMI
                     AYFENGVGKFGIIYDVMRDKLFHGGDSFPVYCNQERLKKPELCPLRQSLIGINAKLYA
                     GNAHGVAELANQSLGTRSVGSAGIGFTHVLEGRLFAYASYLCPWDYAAASIIGSSLGL
                     VMLSFDGPSLAYDKREFVMLVSESHLEEVKGYIF"
     gene            complement(10092..10370)
                     /locus_tag="U1087_000751"
     CDS             complement(10092..10370)
                     /locus_tag="U1087_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002286915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0223 family protein"
                     /protein_id="HEM4755250.1"
                     /translation="MNKNYSYPLDFSWSTEEISSVLSFLNQVEAAYEKGADAVAILAS
                     YKSFKDVVKSKGQERQIDRDFEAVSGYSTYRVVKAARDKGKGVIRFGN"
     gene            complement(10385..10786)
                     /locus_tag="U1087_000752"
     CDS             complement(10385..10786)
                     /locus_tag="U1087_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Spx/MgsR family RNA polymerase-binding
                     regulatory protein"
                     /protein_id="HEM4755251.1"
                     /translation="MITLFLSPSCTSCRKARAWLTSHEVPFIEHNIMTRPLTAEELKN
                     ILALTENGTDDLISTRSKVFQKLDIDVDELSVKQLIGLIETYPSLLRRPIILDEKRMQ
                     IGFNEDEIRAFLPRKYRKQELKNATLRAEIR"
     gene            complement(10860..11597)
                     /locus_tag="U1087_000753"
     CDS             complement(10860..11597)
                     /locus_tag="U1087_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium channel family protein"
                     /protein_id="HEM4755252.1"
                     /translation="MLKRLIRHPFYEKAMTYIALVYVFLIVLALMDANIANSSGYRVL
                     DLLLWFVFVCDYFAQLYYADDILEYVQGHILELIAIIPFDLFFSFLRLGRLARLFRLV
                     KVTRMFALSNRFWDTINKLLHTNSLSKVLMLNISAVLVASVLLSVIEGKSFFDALWWS
                     IVTMTTVGYGDIVPQDTISKIIAILLMLVGICTFGMVTSTITRFFSETERETKLDTLM
                     AKIDEQNEILLGLEKKIESLEKLQGRD"
     gene            complement(11590..12513)
                     /locus_tag="U1087_000754"
     CDS             complement(11590..12513)
                     /locus_tag="U1087_000754"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HEM4755253.1"
                     /translation="MKIRTIKNYQELHQEKPTVLVLGYFDGIHLGHKALLDRARQVAD
                     EKGLTVTVLTFPETPRLAFARFTPELLLRLTSQDQRYHLLEQYGVDQLVLTDFTSEFA
                     SNTPQQFLERYIKGLNAQVLVAGFDYHFGNCRADVKDLTESFDGQVEIVSEVSMDGEK
                     VSSTRIRQAIQSGDVSLANQLLGYPFMTEGIVVHGDARGRTIGYPTANLAPFDRVHLP
                     SEGVYVADVEVDGKRYRAMTSVGKNVTFDGTEMRIEAHIFGFDRFIYGEKITIFWLEK
                     IRDMVKFDGIEGLMEQMKSDEEFALQWEKYA"
     gene            complement(12533..13423)
                     /gene="truB"
                     /locus_tag="U1087_000755"
     CDS             complement(12533..13423)
                     /gene="truB"
                     /locus_tag="U1087_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005590179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HEM4755254.1"
                     /translation="MSGIINVKKEAGMTSHDVVFKLRKILQEKKIGHGGTLDPDVTGV
                     LPIAVGKATRMIEYMQEEGKIYEGEITLGYSTTTEDASGDLVERTPVLDIAEQAVDEA
                     MASFVGTITQIPPMYSAVKVNGRKLYEYARAGEEVERPQRQIEIYSFERTSPIELADD
                     CARFTFRVRCGKGTYVRTLSVDLGAKLGYASHMSKLERTGSAGMDLADALTLEEISSL
                     VAENDFSFLRPIEQGIGDLPIVDLTIEQVIEARYGRFIALDSQAELLAGFHREKLVAI
                     LEKRDQVYKPRKVFLEEVLA"
     gene            complement(13476..13685)
                     /locus_tag="U1087_000756"
     CDS             complement(13476..13685)
                     /locus_tag="U1087_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755255.1"
                     /translation="MEWSTIKFGDKGYYDAPLIFSWGYDEEEEVGIEEAVTYEVAPSG
                     TMRRIHKELENLIGTTFGSYRFYDD"
     gene            complement(13715..15040)
                     /locus_tag="U1087_000757"
                     /pseudo
     CDS             complement(13715..15040)
                     /locus_tag="U1087_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002312832.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF438 domain-containing protein"
     gene            complement(15040..15270)
                     /locus_tag="U1087_000758"
     CDS             complement(15040..15270)
                     /locus_tag="U1087_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1858 domain-containing protein"
                     /protein_id="HEM4755256.1"
                     /translation="MNTIDLNLPVAEIINQHPEVKDILVELGFKPLANPAMLNTVGKV
                     TNLKTGSKMTKIPLDRIQQVLECNGYEVIGGE"
     gene            complement(15283..15777)
                     /locus_tag="U1087_000759"
     CDS             complement(15283..15777)
                     /locus_tag="U1087_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM4755257.1"
                     /translation="MIVPLQFEHLLQLDEAFQKQGWPSRKEILTNYLREQEKGERIVL
                     VAEETGVCKGYITLIKQVKEGPFYQSGIPEIADFNVFEDFQNQGIGWQLLDAICQLAS
                     EFTDIVGIGVGLNANYGKAQRLYVKHGFIPDGSGVWYRGRSLPVGAKAYNDDELALYF
                     TKKL"
     gene            complement(15779..17032)
                     /locus_tag="U1087_000760"
     CDS             complement(15779..17032)
                     /locus_tag="U1087_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HEM4755258.1"
                     /translation="MHQITCPHCGTAFQVNETEYSQLLAQVRGAEFDKEIHDRLERER
                     ELLSQKAENDLQARLSDKDKEILELTAKLDKFASQTELEISSAISQKDQEIQELKAQL
                     GQIGLAKDLELQQAVAQVEKERDAAQNALVLQEQKQELALATTRQEYEVRLKAADEQV
                     EFYKNFKAQQSTKAIGESLEQFAEAEFNKVRSYAFPHAKFAKDNEVSASGSKGDFIFR
                     DFDESGLEFISIMFEMKNEADTTKTKHKNADFFKELDKDRREKKCEYAVLVSMLEADN
                     DYYNTGIVDVSHEYEKMYVIRPQFFIQLIGILRNAALNSLQYQQELALVKEQNIDITH
                     FEEDLEIFKNAFAKNYQSASNNFQKAIDEIDKAIKRMEAVKAALTTSENQLRLANNKL
                     DDVSVKKLTRNNPTMKAKFEALRED"
     gene            complement(17039..17287)
                     /locus_tag="U1087_000761"
     CDS             complement(17039..17287)
                     /locus_tag="U1087_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755259.1"
                     /translation="MKKWWEQLKEEYYETRFDSNEDWMEWFIKRKMTWGWRWPTAITI
                     FVLWALSLPDARNVVRFFYFLLTLAVLHKLISYLKRRK"
     gene            complement(17305..>17742)
                     /locus_tag="U1087_000762"
     CDS             complement(17305..>17742)
                     /locus_tag="U1087_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HEM4755260.1"
                     /translation="YLLSICYSVSASLTEAWDLLATDSGFAHWFPQLNIVGNTLVFEM
                     EGFREVMDLLEYRKNEKIAYRWDSATVSFTLSQLENQTLITFEERIPEDFGNEFANAQ
                     KDMTGWLVPNECIKKFLEGQEPPVCQPLQEKWRTFLELELEGL"
BASE COUNT         5188 a         4079 c         3189 g         5286 t
ORIGIN      
        1 cctcacttcc aaacatttag gttcgatttt ctatggtcac tttcttattt ttaggtgacc
       61 agctgaaaca gttccccaaa cctttggagg ctggagatag agcgaacaga gttcgctaca
      121 aaactatctg ggagacagtt ggaagttgga aatagagcga actttgagaa gaaaggctgg
      181 attttttacc cagcctctaa tcttgatgaa tggttagtta tttgggtaaa cgtacctcaa
      241 aaatagttcc tttcggttgg ttatctctca cagaaatctc accatctaaa ttcttaataa
      301 tttgttgagc taaagataaa cctaaaccaa atccaccttt ttgacgtgtt ctagccttgt
      361 caactcggta aaagcgatca aagattttct ttttatcggt atcgctgatt cccaaaccat
      421 tgtcaataac tgtaaaacaa actagtttgt ccttgatatt agctgctatt tgaattgtcc
      481 catcttcatc ggtatacttc atagcgttgt caaacaaaat ggtgagcaac tgtttaatca
      541 aaaccttgtc tgttcgaatt ggctgatgaa tcaaattatt aactgttaga gtttttccat
      601 tttcttcggc aatcataagg taattagcaa agatttcatc aaaatagttg ggttggacat
      661 cgatcatatc gacttttaag ccatcatcac gacgagccaa attaagtaaa tttgttgtca
      721 atagtcgcat atttcgaact tcttctaaac tagatccgat gctttcacta ctttccaaaa
      781 tagttgtctc gggatgacga aatagacttt ccaggcgatt ttgaagaact gccaacggtg
      841 tgcgtaactc atgactagca ttttcaacga agtctttttg tttttgataa ctaattagga
      901 ttggacgcat gctaagattc gataggtaaa tacttgctag tatagaaatc aaccaagctg
      961 ataccataac aatagcaact gtcgcttcat agctctcaat ggaagattta atttggctga
     1021 cattcaccaa aattgtcgca tattttatat cataggacga ataataacct agttcatctg
     1081 tagccagccc aatcgttata tagcgataat cttcagacat accaaaactt gattcaaccg
     1141 tagtttcctt aatttcaccc aatttttcct tgtctaatga taggtcggcc aaaccagtaa
     1201 aagtatctgg attaatcatc tctccacttt tactatagag taaaacatga gtattggcac
     1261 ctaatctcag ctgatctcca gctctagtat ttttttgatt tttaggaaca ggcatgctat
     1321 ctgaactaga gctcgtagtt tcttcaccag ttggactatc ttgaaggata aatacagaat
     1381 tgggctcata ggttcttgcg attgcaaaac caacagccag cgctggttct ttcttaatgc
     1441 gtttcaaggt gttatctgaa ttttggtaca tagttgaacg cattaattga aaaatgatag
     1501 ctgtcatcaa gccaaaaatc agggtaaata ctgcaaaata acggataaag aaggaaaatt
     1561 tatccgtata cactaatttt ctgattcgct taggcatttt ttagaatgta cccgacacta
     1621 cgcagggttt gaagattttc cccgaaggtc gttcctttca actttttcct aattttagaa
     1681 acatatactt ctactactga aatagtagtg tcactgtcaa atccccaaat acggtcaaaa
     1741 atttgagttt ttggtaagat aacattttga ttttgcaaga agtagactag tagatcgaat
     1801 tcttttccta gcaattcaac ttcttcgcca tttacagttg tagagtttgt cgataagtca
     1861 acggtcacgt ccccataagt tagtgtgttt tcattaaact tacccgctcg ttttaataga
     1921 gcttgaattc gcatcttcaa ttcttctaaa taaaacggtt tcgtcaaata gtcatcagcc
     1981 cccaattcaa aaccatggcc tttatcctct agactttcct tggctgttgt aatcagaaca
     2041 ggtgtcgtaa cacctttttc acgtaattct ttcaaaactt ggaagccatc tttttcaggc
     2101 aacattaaat ccaaaagaat caaatcataa acgcctgttt ccgcctcata aacgccctct
     2161 tcaccatcaa aaacctgcat aacatccgca aaatcatcta agaaatcgaa aacagaattt
     2221 gatagactta aatcatcttc cactaacaat attttaatca tcatacactt ccttacattt
     2281 cggtttaata aacaaaccaa agacctggga caggtcacgg tctttaagag aaatggttaa
     2341 ataaagtact actatgacca gctgaaaaat gaatgataag gtagtcttta tctaactatt
     2401 tattgatacg agttcattat atcatggaat aagtaaaaat cgaaatctca atatttattg
     2461 attagaagaa ctactatctc ctgaaatttg agctttattt tcttgattcc tcttttttaa
     2521 agcattcact tcatcagaag aagtactcga gtttgactgg gttgctccac ttgtcgcatc
     2581 aggaggagtt gtaccttgtc cagatggcat gccttgggta gctacttgtc cactcttagc
     2641 cacgcgccaa agttgcctga ctttgtgttg aaactcctgc tgagctttta gaaatactca
     2701 ttcccctgca aagcccaaga tagcagctga aatagcaaca gcagctagta ctgtttttga
     2761 ctgtgactta aattgattaa taaatgacat gaaattcccc ttttcaatag aatattatca
     2821 gaatgagacc tgttaaataa ctcctcttca cctgatgata atagtatagt attgaaaact
     2881 taaaacaagc taaagaaatt cagcattttt tataaaagtc cattacacaa aaagaagccc
     2941 tctcggactt ctgaattaca actctgtaat atcacctgtg cgtagataaa caacccactc
     3001 acaaatattt ttagcataat caccgacacg ttccaagtag gttaaaactt ggtaatagtc
     3061 gcgaccagca accaaggatt ctggattctt cttgatttct tccgttgtca attcttgaat
     3121 agttgaatag aattcattga caacctcatc acgtgctgct acttcataag cgcgctccat
     3181 atcagcatca cctaagtaga gttccaaagt ttcttctact aattgacgaa cttcacgtcc
     3241 cattttcttg atttcttctt caacaactgg gatgcgaact tctcccttca tacggatagc
     3301 tgctttagca actgagactg catggtctcc catacgctcc aaatcactag ttgcttttaa
     3361 gactgtgata acgcgacgaa gatctgttga gacaggttgt tggagagcaa tgatttcaag
     3421 tgattttttc tctaatttca cttcgaaagc attaattttc ttatctgctt caataacttc
     3481 ttttgctaat tcacgatcat gagttgtaaa ggcacgaaca gcattattaa tctgagccaa
     3541 tacttcattt cccatggcgt aaaattggtt attaagtttt cctaattcct cttcaaattg
     3601 agctcttaac atgtgaacct ctttcttttt cttataggcc ttagccgaac ttacctgtaa
     3661 tatagtcttc tgtttcttta ttggcaggat tcaagaacat ttcttttgtc aaattgtatt
     3721 ctatcaaatc gccatcaagg aagaaacctg ttcgatctga aatacgtgat gcctgttgca
     3781 tagaacgtgt tactagcacc attgtatact tatctttcag accataaagt gtgtcctcaa
     3841 ttttaccagc tgagattggg tcgagagctg aagttggctc atccaacaaa ataatttttg
     3901 ggcttgttgc caatacgcgg gccacacata cacgttgctg ctgtccacct gaaagtccaa
     3961 ctgctgagtc atgcaagcga tctttcactt cattccaaat agaagcacca atcaaggaac
     4021 gctcaactgc ttcgtccaag acctgcttgt ccttgatacc gttaatacgc aaaccataaa
     4081 cgacattctc gtagatagac atcgggaatg ggtttggttg ttggaatacc ataccgattt
     4141 ccttacgaag atcaacagta tccgtacgag gactgtatat gttctttccg ttgtaatcaa
     4201 tcgcacctgt caatgttacc tctgggttta aatctcccat acggttaata gaacgcaaga
     4261 gggttgactt cccagaacca gatggtccaa tcaaagcagt aatttcattt ggatagaaat
     4321 cgattgacac attattcaag gctttcttct tattatagta aacagacaaa tcttttactt
     4381 gtaaaatagg tgatgtcatt tgttcccttt ctatccaaaa tgtcctgaaa cgtagtcact
     4441 agttgacttg agttttgcat tctggaagac gtttgctgtc ttatcatatt caatcaagtc
     4501 acccagatag aagaaagctg tgtaatcact tgcacgagct gcttgttgca tattgtgcgt
     4561 aacaatgata atggtgtagt ccttcttcaa ttcaaacata gtttcttcta actgcatagt
     4621 cgcaattgga tccaaggctg atgcaggctc atccataagc aagatttgtg gttttacaga
     4681 gatagctcgt gcaatacaca aacgctgttg ctgtccacct gataaagtaa aggctgactt
     4741 gtgcaagtca tcttttacct gatcccaaag ggctgcttgt ttcagagaag tttcaacaat
     4801 ctcatccaaa acctgcttat ctttcacacc tgcacgttca tgtgcgaatg tgatgttgcg
     4861 gtaaatagat tttgcaaatg ggttgggacg ttggaatacc attccgatat gcttacgaat
     4921 ttcgtaaacg ttcatatctg gtctattgat gtcgattcct tcataaagaa tttgaccggt
     4981 taccttagca atatcaatag tatcattcat acgattaaga ctgcgaagat aggttgattt
     5041 cccacaccct gatggtccaa tcaaggctgt aattttattt ttttcgaact gcatatcaat
     5101 gcccttgatt gcttcatttt taccatagta aacatgaaca tcttttgtcg aaagggcgat
     5161 attctcctct ggaaaagtaa tgatatggcg ttcattccag ttgtaatctg ccattttttc
     5221 tccttataag tcagacttct aggctgctga agtcattttc gcatgaagtt tcttaccgat
     5281 atatcgtgca gaaaagttga aaatcaagat gaataccaag aggatggctg ctgaaccagc
     5341 tgacacttga gttgcatctg ggattgtccc ttcgctgttg accttccaaa tatgaaccgc
     5401 aagggtttct gattgacgga agatagaaat cggactcgta acactcaatg gattccagtt
     5461 tgaccagtca agagctggtg ctgactgacc agccgtgtag ataagagctg ctgcctcacc
     5521 gaagatacga ccagatgcca agacgatgcc tgttacaatc cctggaagtg cttctggaat
     5581 aacaacatgg agaacagttt cccaacgtga tagaccaaga gacaatcctg cttcacgttg
     5641 tgtatggtga acgtgacgaa ggctgtcctc tacgttacgc gtcatctgtg gtaaattaaa
     5701 gactgtaaga gccaaggcac ctgataagat agaaaaaccg tactcaaact gaacaacgaa
     5761 aatcaagtaa ccaaacaaac caacgacaac ggacggtagg gatgacaaaa tctcaataca
     5821 ggtacggata aagttagtca atggaccttt tttagcatat tcagccaaat aaatacctgc
     5881 accggttgac aagggaacag aaattaagag cgttacaacc aataggaaga atgagttgta
     5941 gagctgaatt ccaataccac caccagcttt gtaagatgaa gatttacttg tcaaaaaatc
     6001 ccagcttaca tgtggcagac cacgtagcaa gatgtaaaga atcagtgacg tcaggataac
     6061 gacaatcaca ccagcgattg agtaaagaat accagtcgcc aatttatcaa attttttagc
     6121 gtgcatagtt tttcttaccc tctcttgtaa taaatttcat aatcatgtta aagataaggc
     6181 tcatcaagag caagactagg gccaaggacc ataggacgtt gttctggaca gttcccataa
     6241 ccgtattacc gatacccatt gtcaaaacag aagttaaagt cgctgctggc gttgtcaagg
     6301 aagtcgggat aaccgcagag ttccccacta ccatctgaat agccaaggct tcaccaaagg
     6361 cacgcgccat accaaagata acggccgtaa aaatacctgg cttagctgcg ttcaaaataa
     6421 cacgccaaat cgtctgccag cgagtggctc ccatagccaa acttgcttca cggtagtgac
     6481 ggggtactgc acgcaaactg tcaaccgtca taaaggttac tgttggcaaa atcataacga
     6541 aaagtacaaa tacacccgac aagataccga aacctgttcc accgaagatt gaacgtacaa
     6601 atggcacaac tacttgcaaa ccaataaaac catatacaac cgatggaata ccgaccaaaa
     6661 gttcgataac aggttgtaag atttttgcac cacgttttgg tgatatttct gtcatgaaga
     6721 ctgctgcacc gattgcgata ggggtcgcaa caacagctga cagaatcgta acaatgaaag
     6781 aacctgaaat cattggcagg gcaccaaata ttttcgagct tggttcccac ttgcttccaa
     6841 ataagaaatc agtgatgctc acaccgtcaa caaagaaagt cgataatcca cgctgtgcaa
     6901 cgaaaatcaa aatcattgca acaataaaga caatcaatga cagacaaagg aatgtaatta
     6961 ccttaccaaa cttctctaat agagagtttt tagatggaga cgataactct tttgctagtt
     7021 gttcgttttt catgcttact ccttctcaga caccgtgcca tcagcacttt tcacaacttt
     7081 catatcgttg atagaaatgt atcccatact ttcaacgata ccatcttgaa cctcatctga
     7141 catcatgtaa tctaaaaatt cttctgtcaa atcagtcgca tttcccatcg tatacatatg
     7201 ctcataggac caaattggcc aatcatttgt tgctacattt tcagcagttg gttcaaaacc
     7261 gtttaactta attgttttaa cggaatcatc tagataagca aatgataggt aggaaattgc
     7321 acctggtgtc tgagcaacaa tagattttac cataccgtta gaatcttgtt cttgactctg
     7381 agctgcggtt tgtccatcca tgataacact atcaaaggtc gcacgtgaac ctgaactagc
     7441 tgcacggtta atgattgaaa tttccaaatc cttaccaccc agttctttcc agttggtaat
     7501 ctcaccagtg aaaatcttac gaagatcttc tgtggtaata ttatcaactg tgactttttc
     7561 attgacaatc acagcaagac ctgcaacggc aacttgatgg tctaccaatt tgctggcatc
     7621 aatcccttct ttttcctcag caaatacgtc agagttacca atctgaacag ctccagactg
     7681 aacttgtgac aagccagtac ctgatcctcc accctgaacg ttgatggatt taccgatatt
     7741 gacactacca aattcatctg ctgctgcctc aacaagtggt tgaagcgctg tcgaacctac
     7801 ggctgtaata gactctcctc tatcgatcca agaagaacaa cctgaaagag ccatactact
     7861 caaaagaaac aaagctgcaa ttccaagctt ctgctttttt ttcatttcgt tttttccttt
     7921 acatttttca gtggaatctc ctaaaattaa ctctgtattt tacatagaat ttacaagata
     7981 tttccactca tccactatat catataaaaa gacaagttgc aaaaaaaatc tgcttaattc
     8041 aactaaaatc tcaagccctt aggaaagccg tttttaagcg ttccagatac aatttttgcg
     8101 aaaccaagac cgttcccctg aactgctacc tgataccagc cattagctaa atccttggaa
     8161 acagctattg tatgtccagc agtataggac gagaattctt ctgagctgat ttccactcga
     8221 tttttaacct ccgaactatg gagtgctaga cctaaagcaa aacttggttc aaatcttttt
     8281 ttcttaaacg tccccaagtg aagaccattt cgagcaatct ttacttttga caaatcagga
     8341 aggccgtgtg gcagtaggta gagattgtcg ccaaaaacct gcagtaaacc atccaattga
     8401 acccttaaat gcttctgttc aaattctttc cagagagatt gctgttctct attcaaattg
     8461 gattttcctg gttttaattt tttctgactg gcttccccta gaaatctaaa tttggcaacg
     8521 aactgacctt ctcctgcaaa atggtgggga tacatacgag ccgtttgagg atagccaatc
     8581 ccttctgcca tgccattgat tttaggaatg tctattagtt ccaaatcata ctgttccaag
     8641 agccacgtca ctacttcttc attttcctct ggtgaccaag tgcaagtaga ataaatcaat
     8701 tgaccacctg gagccaacat gttcaaggcc gattctaaaa tttcacgctg taagctggca
     8761 cattgtgctg gataatgttt ggaccaatat tgaatcgcat cggggtcttt tcgaaacatc
     8821 ccttcaccag aacagggagc gtctaggaca atcatatcga aatatcctgg aaagaccttg
     8881 gccaaacgat cggcagattc attggtcacg actacatttc tcgccccgaa acgctcaata
     8941 ttttcagcca atatttttgc tcgtttgtta gaaatttcat tactaaccaa gagccccgta
     9001 ttttctaagt atgaaagcaa gtgagtagac tttcctcctg gcgctgctgc caagtccaat
     9061 actttcatcc ctttttccgg ggctgcaatc tgaccgacaa cctgtgcagc tggctcttgt
     9121 gaataaacca aaccagtcac gtgttcaggc gatttacctg aaactttacc atagtaagac
     9181 caaggcatat ctggaattag ttgctcaaag tccaactgat tttcctttag tggattgacc
     9241 cgaaaacctg aaatagctgg ctcatcaaag ctctcaaaaa atgcttgggc ttcactacca
     9301 agcaaatgat tatatttatc tataaaatcc tgtggtaatt gcattagaat atatacccct
     9361 tcacttcctc aagatgggat tctgagacta gcataacaaa ctctcgctta tcataggcca
     9421 gactcggacc atcaaaactt aacatgacta agcctaaaga ggaaccaata atactggctg
     9481 ccgcgtagtc ccagggacac agataagaag cataggcaaa taatcttcct tccagaacat
     9541 gggtgaaacc aatcccagcg cttcctacag atcttgtacc taaactttga tttgctaatt
     9601 ctgccactcc atgtgcattg cctgcgtaca actttgcatt tattcctatc aaactctggc
     9661 gaagagggca caactctggt ttctttaagc gttcttgatt gcaataaaca gggaatgaat
     9721 ctcctccatg gaaaagtttg tctcgcatga catcataaat gataccgaac tttcctactc
     9781 cattttcaaa ataggcaatc ataatggcaa aatcagtttt ctgagcaata aaatttgtgg
     9841 tgccatcaat tggatcaata acccaaacat ttccttcatg aatagaagaa acgtctccac
     9901 cttcctcacc taaaatccca tcaccttgat agcgagattg aatctgttga gtcagcattt
     9961 cttgcacttg tttatcaagg tgtgttacca agtctgtaaa gtcacctttt tcttcaatct
    10021 gaagatcatc atgtaaatgc tgtcggagaa aatttccagc ttccaggaca atcgtttggg
    10081 caaagtgata cttagtttcc aaaacgaata actcctttcc ccttatctcg agcagcctta
    10141 acaactcgat aggttgaata tccagaaact gcttcaaagt cacgatcaat ttgacgttcc
    10201 tgtcccttac ttttaacaac atctttgaag cttttataac tagctaatat agctaccgca
    10261 tctgctcctt tttcataagc tgcctccacc tgattcaaaa aagaaagcac ggaggaaatc
    10321 tcctctgtgc tccacgaaaa atcaagtgga tatgaataat ttttgttcat atcttttatc
    10381 tttcttatct tatttctgct ctcaatgtag cattttttag ttcttgtttg cgatacttcc
    10441 gcggaagaaa tgcacgaatt tcatcttcat taaaccctat ctgcatccgc ttctcatcca
    10501 aaataatcgg acgccgtaag agactcggat aggtttcgat taacccaata agctgcttca
    10561 cagaaagctc atcaacatca atatctagtt tctgaaaaac ttttgaacgg gtagaaatca
    10621 agtcatctgt cccattttct gtcaatgcta aaatgttctt caattcctca gcagttagag
    10681 gtctagtcat aatattgtgc tcaataaaag ggacttcgtg acttgtcagc caagcacgag
    10741 ctttacgaca actggtacaa ctcggtgaca aaaataaagt aatcatgtct tccatcccct
    10801 ctaaaaacat ttttcttctt atagtatact ctaacttaaa agagttttca atagtaaatc
    10861 taatctcttc cctgtaattt ttccaaagat tctatttttt tctctaagcc tagcaatatt
    10921 tcgttttgtt catcaatttt tgccatcaag gtatccaact tcgtttcacg ctctgtttca
    10981 gagaaaaaac gagttattgt agaggtaacc ataccaaaag tacaaatacc aaccaacatc
    11041 aagaggatgg ctataatttt agaaatcgta tcttggggga caatatctcc gtaccctaca
    11101 gttgtcatcg ttacaatgga ccaccaaagt gcatcgaaga atgatttccc ttcaatcact
    11161 gataataaga cacttgcaac tagcaccgct gagatattta acatcaacac tttggataaa
    11221 ctgttggtat gcaaaagctt gttgattgta tcccagaatc gattagacag ggcaaacatt
    11281 ctcgttactt tgactaatct gaagagtcgt gcaagtcttc ccaagcgaag aaaactgaag
    11341 aataaatcga atggaataat ggcaattaat tccaagatat ggccctgtac atattcaagt
    11401 atgtcatccg cataataaag ctgagcaaaa taatcgcaga caaaaacaaa ccataagagc
    11461 aagtctagta cccgataccc actagaatta gcaatattag catccatcaa tgcaagtacg
    11521 ataagaaata catagactag agctatgtag gtcatagcct tctcataaaa aggatgacga
    11581 atcaatcgtt taagcatatt tctcccattg caaggcaaat tcctcatcag acttcatctg
    11641 ctccatcaaa ccttcaatcc cgtcaaattt aaccatatct cgaatttttt caagccaaaa
    11701 aatagttatt ttttctccgt agataaagcg atcaaatcca aaaatatggg cttctatccg
    11761 catctccgtt ccatcaaagg tcacattttt cccaacgctt gtcatagctc gatagcgttt
    11821 tccatctact tcgacatcag cgacatagac tccctcagat ggtaaatgga cacggtcaaa
    11881 aggagccaga tttgcagttg gatagccaat agtgcgccct ctggcatctc catgcacaac
    11941 aattccctcc gtcataaatg gataacctaa aagttgatta gctagagaga catcccctga
    12001 ctggatagct tggcgaatgc gagttgaaga aactttctct ccatccatgc tcacttcact
    12061 tacaatttct acctgaccat caaatgactc tgtcaaatct ttgacatctg ctctgcaatt
    12121 tccgaaatga tagtcgaaac ctgccactaa gacttgtgcg ttcaacccct tgatgtagcg
    12181 ttctaaaaac tgctgaggag tattgcttgc aaactcactg gtaaaatctg tcaaaaccag
    12241 ctggtctaca ccgtattgct ccaacaagtg gtaacgctga tcttgactgg tcaaacgcag
    12301 taaaagttct ggtgtaaaac gcgcaaaagc cagacgaggt gtttctggaa aggtcagaac
    12361 agttactgtc aatccttttt catctgcaac ttgtctagca cggtctaaga gggccttatg
    12421 ccccaaatga atcccatcaa aatagcctaa taccaaaaca gttggttttt cctgatggag
    12481 ttcttgataa ttttttatcg ttctaatctt catattgttt attttatcac aactaggcta
    12541 aaacttcttc tagaaaaacc ttacgaggct tgtaaacttg gtcacgtttt tccaggatag
    12601 ccaccagttt ctccctatga aaacctgcca acaattccgc ctgactatct aaggctataa
    12661 aacgaccata tctagcttca atcacttgct caatcgtcaa atctacaatc ggcaagtcac
    12721 caattccctg ctcaataggg cggaggaatg aaaaatcatt ttcagctacc agcgaagaaa
    12781 tttcttctaa agtcaaggca tccgctaggt ccattccagc tgaacctgta cgctccagct
    12841 tagacatgtg actggcgtag cctaacttag cccctaagtc aacagaaaga gtacggacat
    12901 aggtgccctt accacagcga actcggaagg taaaacgtgc acagtcatct gctagttcaa
    12961 tcgggctagt ccgttcaaaa ctgtaaatct caatttggcg ttgaggacgc tcaacttctt
    13021 cacccgcccg tgcgtactca tagagcttgc ggccatttac tttgacggcg gaatacatag
    13081 gtggaatctg ggtaatagtg ccgacaaaac tagccatagc ctcatcaact gcctgctctg
    13141 ctatatccaa aaccggtgtc cgctcgacga ggtcgcccga cgcatcttcg gtagtggtcg
    13201 aatagccgag ggtaatctct ccctcgtaaa tcttgccctc ttcctgcatg tactcaatca
    13261 tgcgcgtggc cttgccgact gcgatgggca gaacgcctgt cacatctggg tccaaggtcc
    13321 caccatgccc aatcttcttc tcctgcaaaa tcttgcggag cttaaaaaca acatcgtgcg
    13381 aggtcatgcc cgcctctttt tttacgttaa taattcctga aatcattctt ccattataac
    13441 acaaaggacc gctcttgtga gcggtccggt atcaatcagt catcatagaa acgatagcta
    13501 ccgaatgttg tacctatcaa attctcaagt tccttgtgaa tacgtcgcat ggttccagaa
    13561 ggtgccactt catatgtaac agcctcttca atcccgacct cttcctcctc atcatagccc
    13621 caagaaaata tcaatggagc atcataatag cctttgtcac caaatttgat tgtcgaccac
    13681 tccaatagct tgatttcttt caaaaatgac taaactagag ttcccgatga aaatcgctat
    13741 ctatctcaaa aaatggttga atatcctgga catactccaa aacgccttga aactctcctt
    13801 ggtcatcacg caccgcctta tagaccacat agacaaactt gcccatgctc tcggacttga
    13861 accacatggt gacctggtct ttttgccctg tgcggagcaa gtcaaaaatc ttcttgacct
    13921 tgtccactat tttgggagga tggcagagct ccacatgacg tccaatctgg cttggcgtcc
    13981 gtttgaaaat catgtcttcg acagggtcgc tgtcattgta atattggaaa atgtcatcct
    14041 tgttgacaaa ggtgagttcc agcggtaaat ggttgagtat gagattggcc tgctcgacag
    14101 acaagtaacc attgccaaag gtttgcgggc tggtcctatc ctgaacagtt tccgactgtt
    14161 tcttgggtgt gaaggtaatg gtaaactggc cttctggcgt gtcgataatt tgctgatttg
    14221 gtcctgctgg ctgcggaaaa atgctatctg ctgcctgctc tgctatttcc ccaaaaacct
    14281 cccgatgagg cacccacttg gctgtcggct tgacaatggc gtagccgtag gcatcgctgt
    14341 ctgctgccac ttggagccag tcgtcctggg tgaaaatctc cagcaaaatc atgagaagga
    14401 tggtctcttc cttaaaaatc atctcctcga attccttggc aaaggtttca aactactctt
    14461 ttgttgccac taggtcgccg ctttcaagag ttttacgagc cgttttgaag aggtcgcgaa
    14521 tctcatcatc cacaccccac atgaccttgg gcggtgcatc atgaccgtac cgctccataa
    14581 tcggaaagaa gactttttcc ttgcgagtgt agtggttttc aaactgcccc aagaggtcaa
    14641 actggcgtgt caaaccttgc aggagctggt cttgcagttc cgtatcttct gtcagctcat
    14701 actggtcaat gatacggcgg atgcgtaaga gagctgcccg cagggccagg ttttcctgct
    14761 tgaagacata gactggatgt ccttcctggt ccatatccgc cacttccaca tccgcaatgg
    14821 ctcctttgaa gaggttagcg tggatattgc aaaggctcat gacatcttca aaagtgatac
    14881 ccgtgtcgct ggacataagc tcatgctcca tcatggagat ttccagagca gaaactcccg
    14941 tgaaatgctg attaaactgg tcctgaacag actctgggat agcaccattg tgcaggtcca
    15001 agagaatatt cttcaaaatg tcaatccgtt gttccgtcat tattctcctc ctattacctc
    15061 atagccgttg cattccaaga cctgttgaat acggtctaac ggaatcttgg tcatcttgga
    15121 gcctgtcttc agattggtca ccttaccaac tgtgttgagc atagctggat ttgccaaagg
    15181 cttgaaacca agctccacca gaatatcctt gacttctggg tgctggttga taatctctgc
    15241 aacaggcaga tttaggtcga tggtgttcat tttacttttc ctctataatt tttttgtaaa
    15301 atacaaggcc aattcatcat cgttataggc tttggcacct actggcaaag agcgccctcg
    15361 gtaccagaca ccgcttccgt ctggtatgaa accatgtttt acatagagcc gttgagcctt
    15421 tccataattt gcattcaaac caactccaat acctactata tccgtgaatt ctgaggcaag
    15481 ctgacagata gcatctaata attgccaacc tatcccctga ttttgaaagt cttcaaaaac
    15541 attgaaatca gcaatttcag gtattccaga ttggtaaaac ggcccctcct tcacttgctt
    15601 aatcaaggtg atataacctt tacaaactcc cgtttcttca gcaactagga cgatacgttc
    15661 tcccttttct tgttccctta aatagttggt taaaatctct ttgcgggagg gccaaccttg
    15721 cttctggaag gcctcatcaa gttgaagtaa atgctcaaat tgtaacggaa caatcatctt
    15781 aatcctccct caacgcttca aacttagctt tcatggttgg gttattgcgg gttagttttt
    15841 tgacggagac atcgtctagt ttattattgg ctaggcgaag ctggttttcg ctggtggtca
    15901 gggctgcctt gacagcctcc attcgcttga ttgccttatc gatttcatca atagcttttt
    15961 ggaaattgtt gctggccgat tgatagtttt tggcaaaagc attcttgaaa atttccaaat
    16021 cttcttcaaa atgagtaata tcaatattct gctccttaac caaggctaac tcctgctgat
    16081 attgcagact attgagcgca gcatttcgta aaattccgat taattggata aagaactgtg
    16141 gtcgaataac atacatcttc tcatattcat gactaacatc cacaatccct gtattgtaat
    16201 agtcattgtc cgcctctagc atgctgacta atacagcata ttcgcatttt ttctcccgac
    16261 ggtccttatc caactcctta aagaaatcag cgtttttatg cttggtcttg gtcgtatctg
    16321 cctcgttttt catttcgaac atgatggaaa taaattccaa gcccgactcg tcaaaatcac
    16381 ggaagatgaa gtctcctttt gaaccggacg ctgatacttc gttgtccttc gcaaatttgg
    16441 catgtggaaa agcataggaa cgaaccttgt taaactccgc ctcagcaaat tgctccaagc
    16501 tctctccaat tgccttagta gactgctggg ccttgaaatt tttgtaaaat tccacctgct
    16561 catccgccgc cttgagccgt acttcgtact cctgacgagt ggtcgctagg gctaactctt
    16621 gcttttgttc ctgcaaaacc aaagcatttt gtgccgcatc ccgctctttt tccacctgag
    16681 ctaccgcctg ctgcaactcc aagtccttgg caagaccgat ttgccccaac tgagccttaa
    16741 gctcttggat ttcttggtct ttttgggaaa tagcagagct gatttccagt tccgtctgac
    16801 tagcaaattt atcaagtttt gcggtcagtt ccagaatctc cttatcctta tcactcaatc
    16861 tagcctgcaa atcattttca gccttctggc ttaataattc ccgttcccgc tccaaacggt
    16921 cgtggatttc cttgtcaaac tccgcaccac gcacctgggc taaaagctga ctatattctg
    16981 tttcattgac ctgaaaggcc gtcccacaat gggggcaagt aatttgatgc atatactctc
    17041 actttcttct tttcaaataa gatattaatt tatgtaaaac cgccagcgtc aataaaaaat
    17101 aaaagaaacg aaccacattt ctagcatctg gaagtgatag agcccaaagg acaaaaatcg
    17161 ttatagcagt cggccatctc cagccccagg tcatcttccg tttgataaac cattccatcc
    17221 aatcttcatt agaatcaaac cgtgtttcat aatattcttc tttcagttgt tcccaccact
    17281 ttttcataac agcctccttt cagatcacag accttctaat tcaagctcca gaaaagtcct
    17341 ccacttttcc tgcaagggtt gacacacagg cggctcctga ccttctaaga attttttgat
    17401 acattcattt ggcaccaacc atcctgtcat gtctttttga gcattcgcaa attcattacc
    17461 aaaatcttct ggaattcgtt cttcaaaagt aattaaggtc tgattttcta gctgagacag
    17521 tgtaaatgaa actgttgctg aatcccacct gtaggcaatt ttctcatttt ttcgatattc
    17581 cagtaaatcc ataacttcac ggaatccttc catttcaaaa accagcgtat ttcctacaat
    17641 gttcaactgt ggaaaccagt gggcaaaacc actgtctgtc gccaacaagt cccaagcttc
    17701 tgtcaaacta gccgacacag aatagcaaat gctgagcagg ta
//
LOCUS       DASFRC010000032        17604 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.032, whole genome shotgun sequence.
ACCESSION   DASFRC010000032 DASFRC010000000
VERSION     DASFRC010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 17604)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17604)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17604
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.032"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(3..2456)
                     /gene="parC"
                     /locus_tag="U1087_000763"
     CDS             complement(3..2456)
                     /gene="parC"
                     /locus_tag="U1087_000763"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HEM4755261.1"
                     /translation="MSNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRI
                     LYSMNKDGNTFDKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMH
                     GNNGSMDGDPPAAMRYTEARLSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFP
                     NLLVNGATGISAGYATDIPPHNLAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGAI
                     IQGADEIKKAYETGKGRVVVRSRCEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVR
                     VNNKVPGIAEVRDESDRTGLRIAIELKKDSDEQTILNYLYKYTDLQINYNFNMVAIDN
                     FTPRQVGLQKILSSYIAHRREIIIARSKFDKEKAEKRLHIVEGLIRVISILDEVIALI
                     RASENKADAKENLKISYDFSEEQAEAIVTLQLYRLTNTDIVTLENEEAALREQIQTLA
                     AIIGDERTMFNLMKKELREVRKQFGNPRLSELQDQAEAIEIDTASLIVEEETFVSVTK
                     AGYIKRTSPRSFGASTVEEVGKRDDDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELT
                     DIRWKDIGEHLSQTLMNFETNEEIIFAELVENFEEGTYFAVTKYGQIKRVERKEFAPW
                     RTYKSKSTKYAKLKDAEDVVITVSPVVLDDIMLITEKGYALRFNIEEVPIIGAKAAGV
                     KAVNLKDEDVVVAAFISKTSSVYLLTQRGSLKRMATEEIPVTSRAKRGLQVLRELKSK
                     PHRVFAAGPVLTDQGDFDLFSTTNEDETTSQIFHVQSKTGKLYDVDVTQLSLSERTSN
                     GSFISDTISDEEVFRAWID"
     gene            complement(2817..3500)
                     /locus_tag="U1087_000764"
     CDS             complement(2817..3500)
                     /locus_tag="U1087_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009755322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEM4755262.1"
                     /translation="MENYIKTLEAERIETLEAYLTVTGLKEYHLTKNDEKILDRFAKL
                     SDTESRVEYLGTYTLSDLFYLNSSKRKYNANSIEFGGEFPYVARGESNNGIRGYITEP
                     EEFLNPAGSISFGQDTATMFYQKEAYFTGDKIKILQAKDIELDRFTGQYIITAMRKSF
                     STFSWGSSSFNEHVLKSVEVSLPTQNNQPDYTFMSDFIKVIEKLVIKDLVEWTDKKIQ
                     ATKEVVAQH"
     gene            complement(4001..6025)
                     /locus_tag="U1087_000765"
     CDS             complement(4001..6025)
                     /locus_tag="U1087_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HEM4755263.1"
                     /translation="MDWKLESDVNDWVKGQLDRIGLRKLQDYNEESGMSPYMREALRG
                     SAKTESKANFGKPDFHVEKYSRPVIFENKFSAKKLLAENKDGIKQDDSSVSAYAVNGA
                     LYYARNMIASGKYSEVFAIGVAGDNEENVSLKVYYVFGSALNAYKELTTVQTLDFLEN
                     EKSFETFYKNAVLTEEEKHQILIDSQAVLQSYAKKLNRLMHNHNITAPQRVLYVSGML
                     LAMQDIEMLTPNGDKIKLDDGLIPDNLLGKQVKDKHDGELIVTHISNFLENRGIEKTK
                     RDLMISSFKEISKDAQRDEKTDLDKEVAKLIDGQASVTKQIFTFIYEYIFKAIDGLGG
                     HIDIMGEMYSEFLKYALGDGKEIGIVLTPPYVTKMMSQILAIKKDNKVMDLATGSAGF
                     LISAMELMIEDANAIFGKATTAANEAIDALKKNNLLGVELNAEMFTLAATNMILRGDG
                     SSRIEKGSAFNRPESLFENFKADRLLLNPPFSYDENGLPFLEHGLDKMEKGSLGAIII
                     QDSAGSGKATKTAQSILKKHTMLASIKMPVDLFVPMAGVQTSIYIFEAKTPHDVERPV
                     KFIDFRNDGYKRAKRGISEVDSPVQRYQDIIKIYKAGSRAKVEADWDLDAVYIEDFIS
                     LNGNDWNFEQHQVIDTKPTLEDFKKTVADYLSWEVTQLLQQKGEDVTKKP"
     gene            complement(6029..6589)
                     /locus_tag="U1087_000766"
     CDS             complement(6029..6589)
                     /locus_tag="U1087_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase"
                     /protein_id="HEM4755264.1"
                     /translation="MLEKVERFIAEINRIDRELFQDYFETGKVEKVNLKHTFTKVPTQ
                     PILAYRLNLHESINDYLMRADVKDIAYFYRVKTSESILDKIERFKERNEGYPVNSILN
                     DIFGARMILTSEEIAEVMERLDDWQEKYGLKNWYLRDKDDYVGIHIYFKNKSNFYYPW
                     ELQLWDEKDVDGNIASHIKYKRKFVG"
     gene            complement(6616..7119)
                     /locus_tag="U1087_000767"
     CDS             complement(6616..7119)
                     /locus_tag="U1087_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1232 domain-containing protein"
                     /protein_id="HEM4755265.1"
                     /translation="MPLRVKLTDRFQKRLSEWARKRKPFKNKQELEEKFDQALETWKS
                     SKTRERAEALLSDQGKLEHFLQDIEKKLARLPFGGDKFSAIPGLISMVRSYIRRDYSK
                     LPKGTILAIIGALIYFFSPIDALPDFILGAGLLDDAFVLNACLKLIKTDVDDFRNWQA
                     SQRKLEE"
     gene            complement(7152..7754)
                     /locus_tag="U1087_000768"
     CDS             complement(7152..7754)
                     /locus_tag="U1087_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016176895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HEM4755266.1"
                     /translation="MVLENKLGIENSAELARLEEQISKKKAAQLFETGQLFQIEVGTF
                     AGLVHIHQALFEDIYDFAAKIRDVNIAKDNFQFAPRIFLEQSLAHIDKLPHTTFDEIV
                     DKYADMNIAHPFREGNGRSMRIWLDCMLRDSLGKVVDWNSIDKDEYFNAMVRSHVSTG
                     ELKYLLLQALTEDLGQATYFKGIDHSYYYEGYNLYRTEDL"
     gene            complement(7778..9727)
                     /gene="parE"
                     /locus_tag="U1087_000769"
     CDS             complement(7778..9727)
                     /gene="parE"
                     /locus_tag="U1087_000769"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HEM4755267.1"
                     /translation="MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGNGLHHM
                     VWEIVDNAVDEALSGFGDRIDVTINKDGSLSVSDRGRGMPVGMHATGKPTVEVIFTVL
                     HAGGKFGQGGYKTSGGLHGVGSSVVNALSSWLEVEITRDGAVYKQRFEQGGKPVTTLE
                     KIGTAPKSKTGTKVTFMPDDTIFSTTDFKFNTIAERLKESAFLLKQVTMTLTDERTSE
                     QEEYHYENGVQDFVSYLNEDKETLTPVLYFEGEDAGFQVQVAMQYNDGYSDNILSFVN
                     NVRTKDGGTHETGLKLAITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPE
                     EHLQFEGQTKDKLGSPLARPVVDGIVSDKLTFFLLENGELASNLVRKAIKARDAREAA
                     RKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQ
                     AILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGSDFTIEDVNYDKIIIMTDAD
                     TDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKTEKIAYAWSDGELED
                     LRKDFGKGFILQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVSVLMGD
                     KVEPRRKWIEDNVKFTLEEATAFTK"
     gene            9870..10514
                     /gene="plsY"
                     /locus_tag="U1087_000770"
     CDS             9870..10514
                     /gene="plsY"
                     /locus_tag="U1087_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HEM4755268.1"
                     /translation="MLLNCILLIVAYLLGSIPSGLWIGQAFFKINIREHGSGNTGTTN
                     TFRILGPKAGTIVFVVDFLKGTLAALLPLIFHAQGISPIVFGLMAVLGHTFPIFAQFK
                     GGKAVATSAGMLLGVSPAFCLYLVLIFASSLYLTSMVSFSSVLAAALAILGALLFPAL
                     GIILPSYDWLFTVIIVFLGSFVIIRHKENIQRILKKEENLVPFGLNLTKQKKRV"
     gene            complement(10525..14178)
                     /gene="addA"
                     /locus_tag="U1087_000771"
     CDS             complement(10525..14178)
                     /gene="addA"
                     /locus_tag="U1087_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-exonuclease AddAB subunit AddA"
                     /protein_id="HEM4755269.1"
                     /translation="MAFEEFLSAEEIKALQLAEANSDKQQKRTPEQIEAIYTHGQNVL
                     VSASAGSGKTFVMVQRILDKLKRGVGIDQLFISTFTVKAASELKERIEKNLNETIAET
                     TDMDLRRHLSAQLADLTKADIGTMDSFTQKLVTTYGYSLGISPKFRILQDETEKASLK
                     KEVFDQLFADYLEQDENGAFRKLVRNFSGNRKDNSGFRQVVYQVHDFSQSTSSPTKWL
                     KEQAVQADLYSQERIELILEQGFKEKVLDKLYQAADFFRYHVEWGRNDFGSAKYFANV
                     EEVLDLLTGLDSLDQKDLMERVEKVLLINDQSRGKGLTNANRPKDEHLIAFKEEYNAG
                     KSQIISGLRDLGQEVYELTLLKDYQIQALPMLILLRDFVLDFSQAYLDVKIKEAAFEF
                     GDIGHFAIRILEENVDIRQFFQEKYHEVMVDEYQDNNHSQERMLDLLSNGHNRFMVGD
                     IKQSIYRFRQADPMIFQEKFELYQADSQAGKLILLKENFRSQIEVLEATNAIFTRLMD
                     RQVGEIKYDETHSLVAGSPGQKIAQPKHEMEYLIYDQQDSANSSTDAEEETPLTAGEI
                     EVVAKEIIRLHNEEGADFKDITLLVQKRTHNDLIISIFEKHGIPIVADGGAASYLQSL
                     EVMIMLDTLRVINNPLNDYALVALLKSPMFRFDEDELTRISLQAGTGFFYQKMEIAQQ
                     TNGQHPELMSGELKKKIKDFLSILENWRAFAKMHSIYDLIWKIFNEKFYYDYVGALPN
                     GSKRQANLYALGLRANQFEKTGYKGLSRFIVMIDRALANDKDLADVQEFLPQNAVQLM
                     TIHKSKGLEFKYVFLMNIDKRFNLEDHYQSVIISRKNGLGIQYLADMKDKVNSPLPQV
                     RVLMNTLPYQDNLQELKIANLSEQMRLLYVALTRAEKKLYLVGKDNADKLAKKYDGKK
                     ADGVLAQSTRESVATFQDWILAIDEAFSGEDLHFKKVFVTDEDLTEEKIGKLILKSKL
                     EDASLKDIRQSEDIAQALDQLSSVQELNERYKAAIELPSLRTPSQIKKLYEPILEQEG
                     MEVMEKYQPKRTFNLPDFSKKPKIAGAQVGSAVHELMQRLDLSWLVTEDTVREALEAV
                     HAEQAVKDKINVHIILDFFDTDLGREILANTDKLHREAPFASLQTDPVSQEQFVLRGI
                     IDGFLLYDDHIVLFDYKTDKYDQPIQLSQRYQAQMQLYAEALKKAYKIDRVDCHLILL
                     GGERIEVVEVKVN"
     gene            complement(14178..17444)
                     /gene="rexB"
                     /locus_tag="U1087_000772"
     CDS             complement(14178..17444)
                     /gene="rexB"
                     /locus_tag="U1087_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent nuclease subunit B"
                     /protein_id="HEM4755270.1"
                     /translation="MKLVYTDIRNPLTQYLTDTSAEFAKEAKRVFYIAPNSLSFEMER
                     KVLEYLPEQATFDIIVTRFGQLARYLMIDRKEAGQPLDDVGLAMIFFRVLSQFEDGDL
                     KVYGRLQRDFGFINQLVALYKELQRANMSILDLEAMDSPDKQADLVKIFLAVTDILSK
                     ESFEHQSKLAQLTGLVETGQLDEQLKNIVLVVDGFSRFSAEEEALVSALNERVSEILI
                     GVYASKKAVQVIYAEGNVYQANVDFLRQLSAQFQTKATYIGQEPVLDSIGKFSKNMEA
                     YYDYSGTMIDLTPADQEKIQLWEVVNQKEEVEQVATAIRQHIHQGARYKDILLLLGDV
                     DSYKLQIGKIFDKYDIPYYFGKAEEMSHHPLVHFVESLERLRRYRFRAEDLLNLLKSG
                     LYASISQKELDLFESYILFADMKGQAAFSRAFVANSRADYDTEVIKEKRLVYDLNVLE
                     PLRAKIMEPLNQLFKAGPQSGAALLEKFMAFLEAIELPKNMEKMSRNLSEVEQEKEEQ
                     VWKSFTHLLENFHQIFGKEKLKMDDFLAILQAGMQASHYRTVPATVDVVNVKSYDLIE
                     PHTAKYVYAIGMGQSNFPKVAKNTSLLTEEEMEKVNLVSASSSRFDLVSRENIKKNHA
                     AMMSLLNAATEQLVISTPQIYNEGEDSLSPYIKILQKMGLKSEERGRIKTLSPQDIGH
                     YKSLLSRLIESERPSLETEEWEGQRAFWTVLVRHLKKKLESQGIEIPTITGDIASKQL
                     SDETLAALYPEDKPLNLSASSLTNFYNNQYLYFVHNVLRLREQESIHPTAFQHGLFLH
                     RIFERVVMDQSELDFDQKVDKAILRTRDEAEFAMFYNQDADARYTEEVLDKIARSSAT
                     ILRDNDLVEIDGQEKSFRQDKALVFDLQNGKSVHVNGTIDRLDTLQINQAVGVVDYKS
                     SDQSFSVGDFYNGLKPQLVTYLAALQELDETKDKPVFGAMYLHLQDPIIKLKDTKNLE
                     QLEGAANTSLVYKGLFLKEESLGLNHFYQTRNQLYTEDEFAVLLNHNQELYKQAAMDI
                     LAGRFAINPYTKDGRSVAGEQLKAITGFEADRHMGMARRLVKEAKRQDWMERMKGGPD
                     "
BASE COUNT         4704 a         4140 c         3453 g         5307 t
ORIGIN      
        1 ttttagtcta tccaggctct gaagacttcc tcatcagaaa tggtgtctga aataaagcta
       61 ccgttgctgg ttcgttcgga caggctaagc tgggtcacat cgacatcata gagtttaccc
      121 gttttggact gcacgtgaaa gatttgactt gtcgtttcat cttcatttgt cgtgctaaag
      181 agatcaaaat cgccctgatc cgtcaagact ggacccgcag caaagacacg gtgcggttta
      241 gacttgagct ctcgcaaaac ctgcaaacca cgcttggcac ggctggtcac agggatttcc
      301 tccgtcgcca tccgcttcaa actaccacgc tgagtcagga gatagacgga gctggttttg
      361 ctgataaagg ccgcaaccac cacatcctcg tccttgaggt tgaccgcctt gacaccggcc
      421 gccttggcac cgatgattgg cacttcttcg atgttaaatc gcagagcgta gcccttttct
      481 gtgataagca taatgtcgtc caagaccaca ggtgatacag taatgaccac atcctccgca
      541 tctttgagtt tggcatactt ggttgacttg gacttgtaag ttcgccaagg agcaaactcc
      601 ttccgctcca cacgcttgat ttgaccatat ttggtcaccg caaaataagt tccctcctca
      661 aaattctcca ccaattcagc aaagataatt tcttcattgg tctcaaaatt catgagtgtc
      721 tggctaaggt gttcaccaat gtccttccaa cgaatatctg tcaactcatg gacaggtcgg
      781 tagatgacat ttccaagatt ggtaaagagc aagaggtgct gggttgtctt ggcattctgc
      841 aagaaaatca gctgatcgtc atcccgcttg ccaacttctt ccaccgttga agcaccgaaa
      901 gaacgcggac tagtccgttt gatatagcca gccttagtca cgctgacaaa agtctcttcc
      961 tcgacaatca agctagcggt atcaatctca atcgcttctg cttgatcttg taactcactc
     1021 aaacgaggat taccaaattg cttcctgacc tcacgcagtt ctttcttcat gagattgaac
     1081 atggtccgtt cgtcgccaat aatggctgcc aaggtctgaa tctgctcgcg tagagctgct
     1141 tcttcatttt ccaaggtcac aatatcggtg tttgtcaaac ggtaaagttg caaggtcacg
     1201 atagcctcag cctgttcctc gctgaaatca tagctgattt tcaagttttc cttggcatcc
     1261 gccttgtttt cagaagcacg gataagagca ataacctcgt ccaagatgga aatgacacgg
     1321 atcaaacctt ctacgatatg gaggcgtttt tctgcctttt ccttgtcaaa cttagaccgg
     1381 gcaatgataa tctcacggcg gtgggcaatg tagctggaca gaatcttctg caagccaacc
     1441 tgacgtggtg tgaagttatc aatggccacc atgttgaagt tgtaattgat ttgcaggtcg
     1501 gtgtatttgt agaggtagtt gagaatggtt tgctcatcgc tgtctttttt cagctcaatg
     1561 gcaatccgca gacctgtccg gtctgactca tcacgcacct cggcaatacc aggcaccttg
     1621 ttgttgacac ggacatcatc aattttcttg accagtacag ccttgttgac ctcgtaagga
     1681 atctcggtaa tgacaatctg tttcttacca gccttgagtt gctcaatttc acaacggcta
     1741 cggacaacga cacgtccctt accagtttca taggctttct tgatttcgtc agccccttgg
     1801 ataatggcac ctgttgggaa gtcaggccca ggcaagaact ccatcaactt ttctaactta
     1861 gcagtcggat gatcaatcat gtaaacaacg gcatcgatga cctccgccag attatgcggc
     1921 gggatgtcag tcgcgtatcc tgctgaaatt cctgtcgctc cattgaccaa gagattaggg
     1981 aaggcagctg gtagcacagt gggctctttt tccgtatcgt caaagttcca ggcaaatggt
     2041 accgtctttt tctcgatgtc ggccagcagg tagcctgcca tctccgagag gcgagcctcg
     2101 gtgtaacgca tggctgcagg cggatcgccg tccatggaac cgttgtttcc gtgcatctcc
     2161 accaaaatct cacggttctt ccagtcctgg ctcatgcgga ccatggcatc ataaatagaa
     2221 gaatcaccgt gcgggtggaa attccccatg atattcccga ctgacttggc ggacttacga
     2281 tagcccttgt caaaagtatt gccgtcctta ttcatggaat aaagaatccg acgttgcacg
     2341 ggcttgagac cgtcacgaat gtccggcaaa gcccgctcct gaataatgta tttggagtag
     2401 cgaccaaaac gctctcccat gatgtcctca agggacatgt tttgaatgtt tgacataaat
     2461 taagatacaa agcccgtaaa agacaaagtc aaaataggaa atcggcagaa aatcctgatt
     2521 ttcaagacga tttatctttt tgacacagcc tttagggcgt gttcagttgg ttctactaac
     2581 tgaacattcc tttctttgtt tcttgacgga aagtttatct ttctttttta cttttttgat
     2641 aatcgcctta ggtagtgggg acggaagcga cctcctgcgg agttccattc ctaagttgga
     2701 agccgaagtc ttccaacttc cctgaagcta ataaccttgt tattagcttc tttcactacg
     2761 gcggcgatta tccattttga gctcgctaac gctcgcttgc atgccgtagc aaaatgttaa
     2821 tgttgagcaa caacctcttt tgttgcttgg attttcttgt ctgtccattc aaccaagtct
     2881 ttaatcacca atttttcgat aactttaatg aaatcggaca tgaaagtgta gtcaggttga
     2941 ttgttttggg taggtaaaga aacttcaacg cttttcagta catgttcatt aaaagaacta
     3001 ctaccccaac tgaatgtaga aaagcttttt ctcatagcag ttataatgta ctgaccagta
     3061 aatctatcta gttcaatgtc ttttgcttgt aaaattttaa ttttatctcc agtaaaataa
     3121 gcttcctttt gataaaacat cgttgctgta tcttgcccaa aactgattga acctgcagga
     3181 tttaaaaact cttctggttc agtaatatac cctctgatac cgttattgct ttctcctctc
     3241 gcaacatatg gaaattctcc tccaaattca attgaatttg cattatattt cctcttgcta
     3301 ctgttgagat aaaataaatc cgatagggta taagtaccca aatactctac tctactctca
     3361 gtatcggaga gtttagcaaa tctgtcaagt attttctcat cattttttgt aagatgatac
     3421 tctttaagtc cagttactgt taggtaagcc tcgagcgtct cgatgcgttc agcctcgagc
     3481 gtctttatgt aattctccat atatgaaaat gctatctttc cgttaatagt cggaagctca
     3541 aaaaattctc tcctaacttt tgtccaaaca gccttattct cccaaccaaa acgcagttta
     3601 atcgatttct ctaaagctga agatataaat atcaagtgct ctggaagaat ttctttctta
     3661 aattttatta aataagcatc ccatagaaca cctactttct ttatttgtgg atatacagta
     3721 cctgttgcta cagcaccatt gctaatgata tcaatggtca tttcagcact atcaaaatct
     3781 tcctcacgac cataaaacat aataccatta ttaccaagct ttgcattaac aagtggaaga
     3841 ctaaattcca tactctgcac cttagaagtg tcttttaatt tatcaaaatt ctttctatga
     3901 cattttaatt ctaatttttc aaataaatct ccgatacgat actcccgcca ctctccccct
     3961 gcctcttcaa actctttgtc tagtttggct aggcgagggc ttagggcttt tttgtgacgt
     4021 cttctccttt ttgctggagg agttgggtaa cttcccaaga aaggtagtca gcaacggtct
     4081 ttttgaaatc ctctaaggtt ggtttggtat caatgacttg gtgctgttca aaattccaat
     4141 cattaccatt tagactgata aagtcctcga tatagacagc atccaaatcc caatctgcct
     4201 ctactttagc tcgactgcct gccttgtaaa tcttgatgat gtcttgataa cgttgaacag
     4261 ggctatccac ttctgaaatc ccacgtttag cgcgcttgta gccatcattt ctgaagtcaa
     4321 tgaatttgac agggcgttct acatcgtgag gggtcttagc ttcaaaaata taaattgacg
     4381 tctgcacccc tgccattggc acgaaaagat ctactggcat cttgattgag gcaagcatgg
     4441 tatgcttttt aagaatagat tgggctgtct tggtagcttt accagaacct gctgaatctt
     4501 ggatgataat cgcacctaag cttccttttt ccatcttatc aagaccatgt tctaagaaag
     4561 gcagtccatt ttcatcataa gaaaaaggtg ggttcaacaa cagacggtca gccttgaagt
     4621 tttcaaagag actttctggg cggttaaagg ctgaaccttt ctcaatacga cttgaaccat
     4681 caccacgtaa aatcatgttg gtcgccgcca aagtaaacat ctctgcgttt agctcaacgc
     4741 cgagaagatt gtttttcttg agtgcatcaa tagcttcatt tgcggccgtg gtcgccttac
     4801 caaagatagc gttggcatct tctatcatca attccattgc agaaatcaag aatccagcag
     4861 aacctgtcgc caagtccatt actttgttat cttttttgat tgctaaaatc tgtgacatca
     4921 tcttggtcac ataaggcggc gttaagacaa tgccaatttc cttaccatct ccgagagcat
     4981 acttgagaaa ctcagaatac atttccccca taatatcaat atgaccaccc aaaccgtcaa
     5041 tggctttgaa gatgtattcg tagataaagg tgaaaatttg tttggtcaca cttgcctgac
     5101 catcaatcaa cttggcaact tctttatcaa ggtctgtctt ttcgtcacgc tgagcatctt
     5161 ttgaaatttc cttgaaagag gaaatcatca agtcacgctt ggttttctca atccctctgt
     5221 tttctagaaa atttgaaata tgcgttacaa tcaattcgcc atcatgcttg tctttgactt
     5281 gtttccctaa taaattgtca ggaattagac cgtcgtctaa cttaattttg tcaccatttg
     5341 gagtaagcat ttcaatatct tgcatggcca aaagcatacc agatacatag agaactctct
     5401 gtggagcagt gatattatga ttgtgcatca ggcgattgag tttcttggca taactttgca
     5461 agaccgcttg actatcaatt aaaatctgat gtttttcttc ttctgtcaga acagcgttct
     5521 tgtaaaacgt ttcaaaactt ttttcatttt caagaaaatc aagagtttga acggttgtta
     5581 attctttata ggcatttaga gcagaaccga agacatagta aactttgaga gaaacatttt
     5641 cttcgttgtc accagccaca ccaatcgcaa agacctcgct gtatttacca gaagcaatca
     5701 tatttctagc ataatacaga gcaccattaa ctgcataagc agaaacagaa ctatcatctt
     5761 gtttgatacc gtctttattt tcagcaagta atttttttgc tgaaaattta ttttcaaaga
     5821 taacaggacg actgtatttt tctacatgaa aatctggctt accaaaatta gctttagatt
     5881 ccgttttggc agaccctctc agagcctctc tcatataagg actcatacct gattcttcat
     5941 tgtaatcttg caactttcgt aatccaatac ggtctaactg accttttacc cagtcattaa
     6001 catctgactc taatttccaa tccatttttc accccacaaa cttcctttta tacttgatat
     6061 gactggcgat attgccatcg acatccttct catcccagag ttgcaattcc cacggataat
     6121 aaaaattact cttatttttg aaatagatat gaatgccgac atagtcgtcc ttatctcgca
     6181 gataccagtt tttcagtcca tatttttcct gccagtcatc cagacgctcc atgacctctg
     6241 cgatttcctc agaagtcaaa atcatacgag caccgaaaat atcattgaga atggagttga
     6301 caggatatcc ctcatttctc tccttaaaac gctcaatctt atccaaaatg gattccgatg
     6361 ttttgacacg gtaaaaatag gcaatgtcct tcacatcagc acgcatcaag tagtcattga
     6421 tagattcgtg taagttgagt cgataagcca gaataggttg agttggcacc ttagtaaatg
     6481 tatgtttgag attgactttt tcaacctttc ccgtttcaaa atagtcctgg aaaagctccc
     6541 tgtcaattct gttgatttca gcaataaatc gctcgacttt ttctaacaat ttctgctcct
     6601 tttgtcatag cagagctact cttccaattt ccgctgactt gcctgccagt ttctgaaatc
     6661 atcgacatct gttttgatta atttcaaaca ggcattaagg acaaaggcat catcaagtag
     6721 acctgctcca aggatgaaat ctggtaaggc atcaatagga ctaaaaaaat aaatcaaagc
     6781 acctataatt gcgagaattg tccctttggg taacttgctg taatccctac gaatatagct
     6841 tcgcaccatg gaaatcaagc ctggaatggc tgaaaacttg tccccgccaa atggaagtcg
     6901 cgccaatttc ttctcgatat cttgtagaaa atgttccaat ttcccttgat cagacaacaa
     6961 ggcttctgcc cgttctctag tcttggagga tttccaagtt tcaagcgcct ggtcaaactt
     7021 ttcttctaat tcctgtttgt ttttaaatgg cttgcgcttt cgagcccatt cagacaaccg
     7081 tttttgaaaa cggtcagtta attttactct tagtggcata aaacacctca catagtttgc
     7141 ttctgctaga gttacaaatc ctctgtgcga tagagattgt atccttcata gtaataagaa
     7201 tggtcgatgc ctttgaaata agtagcctga ccaagatcct ccgttaaggc ttgcaataac
     7261 agatatttaa gctctcctgt tgacacatgg cttctaacca ttgcattgaa atactcatct
     7321 ttatcaatgc tattccagtc aacaacctta cccaaactat cccgtagcat acaatccaac
     7381 cagatacgca tactacgacc atttccttca cggaagggat gtgcgatgtt catatctgcg
     7441 tacttgtcaa caatctcatc gaaagtagta tgaggtagct tgtcaatgtg agccaatgac
     7501 tgctccagaa aaatacgagg ggcaaattga aaattatctt tggcaatatt aacatcgcga
     7561 atcttagctg caaagtcgta aatatcctca aataaagcct gatgaatgtg taccaaacct
     7621 gcaaaagttc caacttctat ctggaacagt tggccagttt cgaacagttg agctgctttt
     7681 ttcttgctga tttgttcctc aagacgggct aattcagccg aattttcaat ccccaattta
     7741 ttttctaaaa ccatatggca cctcaacttc cctgagatta tttagtaaaa gctgttgctt
     7801 cctccaaggt aaacttaaca ttgtcctcaa tccacttgcg gcgtggctcg accttgtcgc
     7861 ccatgaggac ggacacacgg cgttcagcac gggctaggtc ttcaatggta acacggataa
     7921 gagtacgagt ttcagggttc atagttgttt cccagagctg atcggcattc atctcaccga
     7981 gccccttgta gcgttggagg ataaagccct tgccaaaatc cttgcggaga tcttcaagtt
     8041 ctccatcaga ccaagcgtag gcaatctttt cagtcttgcc cttgcctttg gacatcttgt
     8101 agagcggcgg aagggcaatg taaacccgtc ctgcttctac caatggtcgc atataacgat
     8161 agaagaaggt cagcaagagg gtctgaatgt gggcaccgtc cgtatccgca tcggtcatga
     8221 taataatctt gtcatagttg acatcttcga tagtgaaatc tgacccaaca cctgcaccaa
     8281 tggtgtaaat catagtgttg atttcttcgt ttttgaggat gtctgccatc ttcgccttgg
     8341 cggtattgat aaccttacct cgcaagggta gaatggcttg gaacttgcgg tcacgaccct
     8401 gtttggcaga gcctccggcc gaatctccct cgaccagata gagttcgttt ttggctggat
     8461 ttttagactg agctggggtt agcttacctg acagaagacc cttgtccttt ttgtttttct
     8521 taccatttcg agattcgtca cgtgccttac gagcggcctc gcgggcgtca cgtgccttaa
     8581 tagccttgcg aactagatta gatgctagct caccattttc caaaaggaag aaggtcagct
     8641 tgtccgatac aatgccgtcc accacaggac gagcaagcgg gctgcccagc ttgtccttgg
     8701 tctgtccttc aaactgcaaa tgctcttctg ggacaaggat tgagagaacc gcagacaaac
     8761 cttcacggta gtcagaacct tctaagttct tgtccttttc cttgagcaag ttggtcttgc
     8821 gggcatagtc gttcatggcc ttggtaatgg ctagtttgag acctgtttcg tgggtaccgc
     8881 cgtccttggt ccgaacgttg ttgacaaagg ataggatgtt gtctgaatag ccgtcgttgt
     8941 actgcatagc aacttgtact tggaatcctg catcttctcc ttcaaaatag aggactggtg
     9001 tcagagtttc cttgtcttcg ttgaggtagg atacaaagtc ctgaacgcca ttttcatagt
     9061 gatactcctc ctgctcacta gtccgctcat ctgtcaaggt catggtgact tgtttgagca
     9121 agaaggctga ttctttcagg cgttcggcaa tggtattgaa cttgaaatca gtcgttgaga
     9181 agatggtatc atcaggcata aaggtgactt ttgtacctgt ttttgatttt ggtgcggtac
     9241 caatcttttc tagggtcgtg actggctttc cgccctgctc aaatcgttgc ttataaacag
     9301 ctccgtcacg ggtaatctca acttccaacc agctggacag ggcattgacc accgaagaac
     9361 caaccccgtg gagaccacct gaagtcttgt agccaccttg accgaactta ccacctgcgt
     9421 ggagaacggt gaagataact tcaacggttg gcttgcctgt tgcgtgcatg ccgacaggca
     9481 ttccacgtcc acggtcggaa acggacaaac taccatcctt gttaatggtc acatcaattc
     9541 ggtcaccaaa tccagacaag gcttcatcga cagcgttgtc tacaatctcc cagaccatgt
     9601 ggtgaaggcc attcccatct gtggatccga tgtacattcc ggggcgtttg cggacggcgt
     9661 ccagcccttc caatacctga atggcatcat cattatagtt atttatatta atctctttct
     9721 tagccaaaac tgacctccat acttatcatc ctttctatat tacaagtttt tgggcatttt
     9781 tgcaaaattt ttctgctgtc tttcggatgg aacagggcaa acagaagtat tttacgaaaa
     9841 atcaattgaa tttgtggtat aatgagagca tgttattgaa ttgtatttta ttgattgtag
     9901 cctatttgtt gggctctatt ccgtcaggtc tctggattgg acaggcattt ttcaagatta
     9961 atattcgcga gcatggctct ggaaatacgg gtacgaccaa tacttttcgt attcttgggc
    10021 caaaagctgg aacgattgta tttgttgttg attttctcaa gggaacgttg gcagccttgc
    10081 ttccgctgat ctttcatgcc caaggaattt ctccgattgt atttgggtta atggctgtac
    10141 tggggcacac tttccctatc tttgcccaat tcaaaggcgg taaggctgtt gcaacatctg
    10201 ctggcatgtt gttgggtgtc tcacctgctt tctgcctcta tctcgttcta atctttgcca
    10261 gttcactcta cttgacgtcc atggtttcct tctctagcgt cttagcagca gccttagcta
    10321 tcttaggagc tctgctattt ccagcattag gaatcatcct gccaagctac gactggctct
    10381 ttacagtgat tatcgtcttt cttggcagtt ttgtcatcat ccgtcacaag gaaaatatcc
    10441 agcggatttt gaaaaaagaa gaaaatcttg tcccatttgg actcaatcta accaaacaga
    10501 aaaagcgagt ttaaccactc gcttttaatt taccttgact tcgaccactt caatcctctc
    10561 cccaccaagc aaaatcaaat ggcagtctac acgatctatc ttgtaggctt ttttcaatgc
    10621 ctccgcatag agttgcattt gagcttggta acgttggctg agttggattg gttggtcata
    10681 tttgtctgtc ttgtaatcaa agaggacaat atgatcatca tatagtagga agccatcgat
    10741 aatcccacga aggacaaatt gttcctgtga tacaggatca gtctgcaaac ttgcaaatgg
    10801 agcttctcgg tggagtttgt ccgtattggc tagaatttct cttcctaagt ctgtatcaaa
    10861 gaaatccaaa ataatatgaa cattgatttt atctttaacc gcttgctcag catgaacagc
    10921 ttctagagct tctcttaccg tatcttcagt caccaaccaa gacagatcca agcgttgcat
    10981 gagttcatgc actgctgaac cgacttgggc tccagcgatt tttggtttct tggagaaatc
    11041 tggcaagttg aaggtccgtt tgggctggta tttttccata acttccatgc cttcttgttc
    11101 caaaataggc tcatagagtt tcttaatttg acttggagtc cgtaaacttg gcaattctat
    11161 agcagcctta tagcgttcgt tcaactcttg gacagaagac aactggtcca aggcctgggc
    11221 gatgtcttct gattgacgaa tatctttaag gctggcgtct tctagcttac tcttcaatat
    11281 aagtttgcca atcttctcct ccgtcaaatc ctcatccgtc acaaagactt tcttgaagtg
    11341 caagtcttct cctgaaaagg cctcatcaat ggctagaatc cagtcttgga aggtcgccac
    11401 gctttcacga gttgattggg ctagtacgcc atctgccttt ttgccatcgt attttttagc
    11461 taacttatca gcattgtcct ttccaaccag atacagcttc ttctcggcac gcgttagtgc
    11521 aacataaagc aaccgcattt gttctgaaag attggcaatt tttagctctt ggagattatc
    11581 ttgataagga agggtgttca ttaagactcg cacctgaggt aatgggctat tcaccttatc
    11641 tttcatatcc gctaaatatt ggatacctag accatttttc cggctgatga tgactgactg
    11701 gtaatggtct tccaagttga atcgtttatc gatgttcatg aggaagacat atttgaactc
    11761 tagacctttt gacttatgaa tggtcatcag ctgaacagca ttttgcggta gaaactcttg
    11821 tacatctgcc aagtccttgt catttgctaa ggcacggtca atcatgacga tgaaacgaga
    11881 caagcccttg tagcctgttt tttcaaactg gttggcacgc aaacctaggg catatagatt
    11941 tgcctgacgc ttgctgccat ttggaagagc accgacatag tcatagtaga atttttcatt
    12001 gaaaatcttc caaatcaggt cataaataga atgcattttg gcaaaagcac gccagttttc
    12061 caaaatagat aagaaatcct tgattttctt cttcaactct cctgacataa gttcaggatg
    12121 ttgcccattt gtttgctggg ctatttccat tttctggtaa aagaaacctg tcccagcctg
    12181 caaggaaatc cgtgtcagct catcctcatc gaatcggaac ataggcgatt tgagaagagc
    12241 aaccaaggca tagtcattga gtggattatt gataacccgc aaggtatcca gcataatcat
    12301 gacttctaaa gattgcagat aggaggctgc tccgccatct gccacaattg gaatcccatg
    12361 tttttcaaaa atggatataa tgaggtcatt gtgcgtccgt ttttgcacca agagagtgat
    12421 gtccttgaag tctgctcctt cttcattgtg aagacgaata atctcttttg caacaacctc
    12481 gatttcacca gcagtcagag gtgtttcttc ctcagcatcc gttgaagagt ttgcgctatc
    12541 ctgctggtcg taaatcaagt attccatctc atgcttgggc tgggcaattt tttgaccagg
    12601 actaccagcc actagactgt gggtttcatc atacttgatt tcccctactt gacggtccat
    12661 caggcgcgtg aaaatagcat ttgtcgcctc caagacctca atctgactac ggaaattttc
    12721 cttaagcaaa atcaattttc cagcctgaga atctgcctgg taaagttcaa atttctcttg
    12781 gaaaatcatc ggatccgcct gacggaatcg atagatggac tgcttaatat cgcccaccat
    12841 aaagcggttg tgaccgttag acagcaggtc cagcattcgc tcttggctat ggttgttatc
    12901 ctggtactcg tccaccatga cttcgtggta tttttcttgg aaaaactggc gaatgtccac
    12961 attttcttct aaaatacgaa tagcgaaatg cccaatatcg ccaaattcaa aagctgcttc
    13021 cttgattttg acatccagat aagcctgcga aaaatccaag acaaagtcac gtaataatat
    13081 cagcattggc aaagcttgaa tctgatagtc tttcagcagg gttaattcat aaacttcctg
    13141 ccccaaatct cgtagtccag agataatctg gctcttgcca gcattgtatt cttctttaaa
    13201 ggctatcaaa tgctcatctt ttggtcgatt ggcattggtc agacccttgc ctctggactg
    13261 gtcgttgata agaaggactt tttcaacccg ctccatcaag tccttctggt ccagactatc
    13321 taaacctgtc agcaaatcta aaacttcttc cacatttgca aaatacttgg cggaaccaaa
    13381 gtcatttctg ccccattcca catggtagcg gaagaaatct gcagcttgat agagcttgtc
    13441 taacactttt tccttaaagc cttgctctaa gatcagctct atacgctctt gactgtacaa
    13501 atcagcttga acagcctgct ctttcagcca tttagttgga ctgcttgtcg attggctaaa
    13561 atcatgcacc tgataaacaa cctgacggaa accactatta tccttacggt tgcccgaaaa
    13621 attgcgaacc agtttgcgga atgcaccatt ttcatcctgt tcaagataat ctgcaaagag
    13681 ctggtcaaag acctcttttt tcagactcgc tttttctgtc tcatcctgta aaatccgaaa
    13741 cttcggagaa ataccaaggc tataaccata ggttgtcacc aatttctgcg taaaggagtc
    13801 catggtcccg atgtctgcct tggtcaaatc cgccaactgg gctgacaaat gccgtcgcaa
    13861 gtccatatcc gtcgtctccg caatggtttc attgagattt ttctcgatcc gctccttcaa
    13921 ctcactagcc gccttgactg taaaggtcga gataaagagc tggtcaatcc cgacgccacg
    13981 cttcaactta tccaaaatcc gttgaaccat gacgaaggtc ttgcctgacc cagccgatgc
    14041 agagaccagg acattctgac cgtgcgtgta gatggcttca atctgctcag gtgtgcgttt
    14101 ttgttgctta tcagaattag cttccgccag ctgcaaagcc ttgatttctt ccgcgcttaa
    14161 aaattcttca aatgccatta gtccggacct cctttcattc gttccatcca atcttgacgc
    14221 ttggcctcct tgaccaaccg ccgcgccatg cccatgtgcc gatccgcctc aaaaccagtg
    14281 attgccttca gctgctcacc tgccaccgaa cgcccatctt ttgtataagg gttaatagca
    14341 aagcgaccag ccagaatgtc catggcagct tgtttgtata gttcttggtt gtggttcaat
    14401 aaaaccgcaa actcatcttc cgtgtagagt tggttacgag tctgataaaa atgattgagc
    14461 cccagacttt cctccttcaa gaaaagcccc ttgtaaacca agctagtatt ggcagctcct
    14521 tctagctgtt ctaaattctt cgtgtctttt aatttgataa tcggatcctg caaatgcaaa
    14581 tacatagctc caaaaacagg tttatccttg gtttcatcca gctcttgtaa ggctgccaag
    14641 taggtcacca actgaggttt tagaccattg taaaaatccc caactgaaaa agattggtca
    14701 ctggacttgt aatccacaac accgacagcc tgattaattt gtaaggtatc caagcggtca
    14761 atggtaccat ttacatgcac actcttgcca ttttgaaggt caaaaactag cgccttatcc
    14821 tgacggaaac tcttttcctg gccatcaatt tccaccaaat cattatcccg caaaatagtc
    14881 gcactggaac gagcaatctt atccagcacc tcctccgtat agcgagcatc cgcatcttgg
    14941 ttataaaaca tagcaaattc tgcctcgtca cgtgtacgca gaatggcctt gtccactttt
    15001 tgatcaaaat ctagttcaga ttggtccatg accactcgtt caaaaatccg atgcaagaag
    15061 agcccgtgtt gaaaggccgt cggatggatg gattcctgtt cccgcaagcg aagcacattg
    15121 tgtacaaagt aaagatattg gttattgtag aaattggtca agctggatgc agaaagattg
    15181 aggggcttat cctctggata taaagcagcc aaggtttcat ctgaaagttg tttagaagca
    15241 atatcaccag taatggtcgg aatttcaatg ccttgcgact ccaatttctt cttcaaatgg
    15301 cgaaccaata ctgtccagaa ggccctctgc ccttcccact cctctgtttc aaggcttggt
    15361 ctttccgact caatcaaacg ggataagaga ctcttgtagt gacctatgtc ttgcggacta
    15421 agtgttttaa tccgaccacg ttcttcggat ttcagcccca ttttttggag aatcttgata
    15481 taaggtgaga gactatcttc gccttcgtta taaatctgag gtgtggaaat aactaactgt
    15541 tccgtcgcag cattaagcag agacatcatg gcagcatggt tcttcttgat attctctcgg
    15601 ctgaccaaat caaaacgtga agaactagct gaaacaagat tgactttttc catctcttct
    15661 tccgtcaata gactggtatt cttggcaact tttggaaaat tggactgtcc cattccgata
    15721 gcataaacat actttgcagt gtgtggctcg atcaaatcat aggatttgac attgaccaca
    15781 tcaaccgttg caggaacggt acgatagtgg ctggcctgca taccagcctg taaaatagcc
    15841 agaaaatcat ccattttcaa cttttctttt ccgaaaatct gatgaaaatt ctcaagaaga
    15901 tgggtaaaac ttttccagac ctgctcttct ttttcttgct ctacttcgct caaatttcga
    15961 gacatttttt ccatattttt aggaagctca attgcctcca aaaaagccat aaatttctca
    16021 agcaaggctg ctccagattg tggtccagcc ttaaacaact ggttcaaagg ttccataatc
    16081 ttagcacgta ggggttccaa aacattcaaa tcatagacaa gtcttttctc cttaataact
    16141 tcagtgtcat agtcagctct gctattggcc acaaaagccc tcgaaaaagc agcctgcccc
    16201 ttcatatccg caaagaggat gtaggactca aacaagtcca gctccttttg ggaaatgctg
    16261 gcgtacaaac cagatttgag gagattgagc aggtcttccg cacggaaacg atagcgacgc
    16321 aagcgctcca aggactccac aaagtggact aggggatgat ggctcatctc ctctgcctta
    16381 ccaaaatagt agggaatatc atatttgtca aaaattttgc caatctgcaa cttgtagcta
    16441 tccacatcac ccaagagcaa caagatgtct ttatagcgag ctccttggtg tatgtgttgg
    16501 cgaattgccg ttgctacctg ctccacctct tctttttggt taacgacttc ccatagctgg
    16561 attttttctt gatctgctgg agtcaagtct atcatggtcc cgctgtagtc ataataggct
    16621 tccatattct ttgaaaattt accaatactg tccaagactg gctcttgacc aatataagta
    16681 gccttagtct ggaactgcgc tgatagctga cgtaaaaagt caacgttggc ttgatagaca
    16741 ttgccttccg catagatgac ttgcacagct ttcttgctgg catatacacc aattaggatt
    16801 tccgacaccc gttcatttaa agcacttact aaagcttctt cttctgccga aaaacgagaa
    16861 aatccgtcta ccaccagcac aatgttcttc aactgctcat ccaactgacc agtttctacc
    16921 aagccagtca actgtgctaa cttagactga tgctcaaagc tttctttgga caaaatgtct
    16981 gttacagcca gaaaaatctt taccaaatca gcctgcttat ctggtgagtc catggcttcc
    17041 aagtccaaaa tagacatatt tgcccgttgc aattctttgt ataaagcaac tagctggtta
    17101 atgaaaccaa aatctctctg caaacgacca tagactttca agtcgccatc ttcaaattgc
    17161 gatagaacac gaaagaaaat cattgccaga ccaacatcat ccagcggttg acctgcttct
    17221 ttcctatcaa tcatcaaata gcgggccaat tgcccaaaac gggtcacgat aatatcaaaa
    17281 gttgcctgtt ctggcaggta ttccaagacc ttgcgttcca tctcaaagga tagagagttt
    17341 ggagcaatat aaaaaactcg cttagcttcc ttagcaaatt ctgccgaggt atccgttaaa
    17401 tactgcgtca gaggattgcg aatatctgta tagactaatt tcatatcaaa ttctcatgct
    17461 ttcgttgaat atactatatc tagtatatca aaataagaca aaaaaatggg agcgagaaag
    17521 aactcgaccg aataaaaaaa gagctcgtct cccaccccca catagctcca acagtcagag
    17581 tagtgactgt tggaggttgg aaat
//
LOCUS       DASFRC010000033        17411 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.033, whole genome shotgun sequence.
ACCESSION   DASFRC010000033 DASFRC010000000
VERSION     DASFRC010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 17411)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17411)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17411
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.033"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            20..1288
                     /locus_tag="U1087_000773"
     CDS             20..1288
                     /locus_tag="U1087_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM4755271.1"
                     /translation="MKKLIHNKLFLSSFVADLISNFGDTLYYLALMNYVLLLTDTKFA
                     LAMITASETLPILAGLFIGIWADKTKNKLDTILATLVVRVGLYAFVGFLMGFAPALWV
                     VAVVCVINFLSDLAGQYENGLYLPVSLRVVAAEDRETAMAFKMTVKSLLQIAFQASGA
                     ILIGFMSYQNLAFFNAGTFLVSLAIMATLRPAFAKLLKENPIQEAEQTETEAGIIKGM
                     RNSLKESYQAVQNIPVLKASIVTIASLNAIFTALSPLVILNMKEFSDFVIVNAGTTVA
                     LISIFFSVGSILGSSIGMALFKNVSLINLLKFSTLMPVLLFSGFFLHNIYVVLTVIFV
                     TAMTLGVFNPKMNALVLNELPEDKLATVGGGIDAFCQIGMVAGQALVAFMVTILSATS
                     ISLIFLLLSVVLVSYTILTGSKPAKSLVNT"
     gene            1299..2339
                     /locus_tag="U1087_000774"
     CDS             1299..2339
                     /locus_tag="U1087_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM4755272.1"
                     /translation="MKLDYRDYRSEIVEKFFIPLIVKEREEPFEADFSQKEKDILKDA
                     LDIRDEIEEKLADFRQEVNQVFVWGHIFNILHSLYFYILNDGQDPKTVEEACQLILKL
                     SQEEVEDAMRTMLASENDGHREQKLSLMELLEKTDKKPADKWYWSLAIRNPLETVQRS
                     VALLDKMLPNYQPYFEQARVEREAFARDFDIEQLYRDSKQLAMTGLDALGVETAQFFV
                     LSPWNYWFAYYGNEEFDYMKVALLASCRIDQIMLSNDELDLDDLTTALKVISDSTRYQ
                     VLVELTKPHAKSKDIAERLNITGAAVSFHTQKLINGDLLLFNAKDKNVKYSVNRDLLQ
                     QVIDKLKEDFDL"
     gene            complement(2361..3338)
                     /locus_tag="U1087_000775"
     CDS             complement(2361..3338)
                     /locus_tag="U1087_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755273.1"
                     /translation="MQNKTKPLNTSLLSLIQFIGAIPVIALHCRRLFEADQLHFIQKS
                     IFSRMVVPYFMVTASFFLRRNYPSLSKQYLTWSVLYLPFYLFYLNLQKIPLLYYPLAL
                     LVGLTYTGTSYQLWYMPAFLLGLVLVHYSLRKWGWRITVCLACLLYLLGSVETYSSYL
                     AESIFLTAFDSYKTFFFTSRNGLFYAPIFVLTGFYLADKLNHPIFQYRQKTKLLVSTV
                     ILICEATIIYLNQGYDKNFIFSLIPFTAYLVAWTLTTDLFRQKKFQFLKEYASYYYFI
                     HVIPVEVSFFFLETSSLTKIQQGWLVFLITIITCQLLSWLIIGYKKRTL"
     gene            3528..4214
                     /locus_tag="U1087_000776"
     CDS             3528..4214
                     /locus_tag="U1087_000776"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HEM4755274.1"
                     /translation="MKDLHAKLLADFGIDFSDLNLLETAFTHTSYANEHRLLKISHNE
                     RLEFLGDAVLQLMISKYLYQKYPDSPEGEMSKLRSTFVREESLAGFSRACGFDQFLRL
                     GKGEEKSGGRNRDTILGDAFEAFLGALLLDKGEKTVEEFIHKVMIPRLEKGNFERVTD
                     YKTALQEILQVNGEIAISYQVIAESGPAHDKTFEVEVSADQRVIGRGRGRSKKLAEQA
                     AAKNAVEARG"
     gene            4217..7750
                     /gene="smc"
                     /locus_tag="U1087_000777"
     CDS             4217..7750
                     /gene="smc"
                     /locus_tag="U1087_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation protein SMC"
                     /protein_id="HEM4755275.1"
                     /translation="MYLKSIEMQGFKSFADKTKVVFDRGVTAVVGPNGSGKSNITESL
                     RWALGESSAKSLRGGKMPDVIFSGTESRKALNYASVVVTLDNSTGFIANKNKEIKVER
                     HIYRSGDSEYLIDGQKVRLRDIHDLFMDTGLGRDSFSIISQGRVEAIFNSKPEERRAI
                     FEEAAGVLKYKTRKKETESKLAQAQGNLDRLDDIIYELDNQVKPLEKQAQTAKKFLEL
                     DGQRKELYLDVLVAQLSLGKEKLSKKEAELESVKTELTSYYKQRSELEQENQNLKEKR
                     HRLSEQLEREQAVLLDLTKLISDLERKIEVHKLESSQNESSRQEAQARLENLLTRREQ
                     LAEQIDQKQETLAQLDSSLSSLKDDIAAVDKEISYFSEDPDQVLDHLREQYVALMQEE
                     AEASNRLTKIQQDIANQISLSESKSEDLARLQTEKQTAQEVLDKSRKSLEEADYVLRQ
                     LLESYQTKKSELDQVQTAYQAEQGRLFDLLDQLKGKQARQSSLEAILKNHSNFYAGVK
                     AVLQAAPILGGIIGAVSEQLTFDTRYQTALEIALGGASQNVIVEDEATAKRAIAFLKE
                     KRQGRATFLPLTTIKPRQLSGQQVSLLESSEGFLGLASDLVTYQPNLDAIFQNLLGTI
                     AIFDTIDHANQAARATKFQVRMVTMDGAEIRPGGAFAGGSNRNNSTTFIKPELDALLG
                     EIAELSSQLQEQESLVAAKKTSLDQTREALETIKAEGEEARLNQQSARIHQEQAENRL
                     AQLSAQYDLQMSQVSPTILTELEEAAAKEEVNVQALNEKKLALDQQINQVRDNRDSIQ
                     ESLQKLQTQKGQLTLEQAELTSQLRFEQTDLRRLQEEKVVADKEISLLEDMIDQKLEA
                     LEDTSIEILEEQLQAASDKQNQTNQILIRLKFELEDIDGQFEDLEERLQQARTKNDDL
                     IRKQAKLEADCEQAGDKLRTLLGNLTEHFKLSFEAAQSQAKEVEYLAVAEQNLKDLER
                     AIRALGPVNLDAIEQYDEVNNRLTFLNEQRTDILSARDLLLDTIHEMDDEVKERFKVT
                     FEAIRESFKQTFKQMFGGGSADLILTEGDLLTAGVEISVQPPGKKIQSLNLMSGGEKA
                     LSALALLFSIIRVKTIPFVILDEVEAALDEANVKRFGDYLNRFDKESQFIVVTHRKGT
                     MAAADAMYGVTMQESGVSKIVSVKLKDVEKL"
     gene            7747..8556
                     /locus_tag="U1087_000778"
     CDS             7747..8556
                     /locus_tag="U1087_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM4755276.1"
                     /translation="MINKIYASDMDGTFLREDHSFDKERFRRILNQFKEKGYLFVAAS
                     GRSMQSLKLVFEDFVDEIGFVAENGSIVEYQGQTIFMDDPISPEIYLPIIAGIDAGPF
                     GSSRSMVLSGLENFYLLKNAEPQFLETMTNYYAHFRLVDTFEEVREEIIKINAKFSPE
                     EMDDARRWLNDTFEGVTAMTTGFDNIDIIPNGSNKSVGLSHLCAHFGITGQAVVAFGD
                     NQNDLDMFDFAGLALATENAREDVKAKADSIIGHCNDGAVLAYLEEEVNGN"
     gene            8546..9373
                     /locus_tag="U1087_000779"
     CDS             8546..9373
                     /locus_tag="U1087_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016465979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM4755277.1"
                     /translation="MAIKLIALDLDGTLLTSDKRISEANKKALQAARERGVYVVLTTG
                     RPLQAIGTFLEELDLLGENQYSITFNGGLVQENTGRVLDKVGFTIEDVRTIRRVTNDL
                     DLPLDVLYGGDVYSLPSAHESLYLTCNPLLNKIVASDEEMPEDFVYNKAVSAVAADFL
                     DGQIPKIPAELHERFEIFKSRDILLEWSPKGVHKANGLAKLIGHLGIDRSEVMACGDE
                     GNDLSMIEWAGLGVAMANATDEIKSAAKVVLPKTNDEDGIAWAIEHYVLNEDYYGII"
     gene            9360..10634
                     /gene="ftsY"
                     /locus_tag="U1087_000780"
     CDS             9360..10634
                     /gene="ftsY"
                     /locus_tag="U1087_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HEM4755278.1"
                     /translation="MGLFDRLFGQEKQEEQVALVEEVEREQSASSEDTVTTEVESTTQ
                     EMEEFQSEVAEPELTAEQEAQKQRTLDMMAQYYAAKEAAAARVKEAQEQGFDPAIQTK
                     VKEEPVEEVAPVEQESEQDKYQRTLKKTRTGFGARLNEFFANFRSVDEEFFEELEEML
                     ILSDVGVQVASTLTEELRYEAKLQNAKKTDELRRVIIEKLVDIYEKDGQFSEQINFQD
                     DLTVMLFVGVNGVGKTTSIGKLAYKYKQAGKKVMLVAADTFRAGAVAQLVEWGRRVDV
                     PVVTGPEKSDPASVVFDGVKRAVAEGVDILMIDTAGRLQNKDNLMAELEKIGRIIKRT
                     LPDAPHETLLALDASTGQNALSQAKEFAKITPLTGLVLTKLDGTAKGGVVLAIRQELD
                     IPVKLIGFGEKIDDIGEFKSEEFMRGLLEGLV"
     gene            complement(10680..11354)
                     /locus_tag="U1087_000781"
     CDS             complement(10680..11354)
                     /locus_tag="U1087_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA alkylation repair protein"
                     /protein_id="HEM4755279.1"
                     /translation="MTELNTILTQLQVASHAGTLKRYEKIGETKPYYGVPMGAISGIA
                     KTYKNRLDLFAPLWQTGVLEAQYLAIQVAKNKPDQLPQADLENCLNEEVSVNVLDKLA
                     SIILSKRKDSKDWEEILLAKDEAIFNRLGWFLRAKYFAGKTATNQEIEETLDHIRKHL
                     QTADPLVQWTMNQCLVEIAVAYPDYLEQGLVIGQELAVYSDMKVPKGCTSPYAPDWIE
                     ALLRRK"
     gene            complement(11496..12983)
                     /locus_tag="U1087_000782"
     CDS             complement(11496..12983)
                     /locus_tag="U1087_000782"
                     /EC_number="1.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000096131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HEM4755280.1"
                     /translation="MSSHVLFTIFGASGDLAKRKLYPSLFRLYKAGHIKENFAVIGTA
                     RRPWTKDFFEQTVIESLGDLPDTPRQAHEFASHFYYQSHNVNDTEHYVALRKLQDDLC
                     EKYNTQHNKVFFLSMAPEFFGTIAKHLKSEQIVDGQGFERLIIEKPFGTSLATATKLN
                     DELAAAFNEDQIYRIDHYLGKEMVQNIFAVRFANIIFEHIWNRDYIDNVQITFAEAIG
                     VEDRGGYYDHSGALKDMVQNHALQVLSLLAMDKPASFKEEDVRAEKIKVFQHLRQPSD
                     EDLKRNFIRGQYAAGSIDGKDYVSYLDEPNIAEGSQTETFAGGVFFVDTDRFRDVPFF
                     FRTGKRLTEKGTRVTITFKHAEDIFGQPSEANVLTIFIQPTEGFMLSINGKEVGSHFA
                     LTPAKLNFRHNATALGNSPEAYEKLFFDVLNGDSTNFSHWEEVKASWSLIDRIVDLWA
                     SNQVPLHTYPAGTMGPEAAFDLLESYGCKWVWTPDVWYRERGLLK"
     gene            complement(13062..13877)
                     /locus_tag="U1087_000783"
     CDS             complement(13062..13877)
                     /locus_tag="U1087_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000617844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03943 family protein"
                     /protein_id="HEM4755281.1"
                     /translation="MIRFLILAGYFEMTMYLYISGKLDQYINLHYSYLAYLSMVLSFI
                     LAIVQLYVWVKEIRVHSHLKSKIAKLSSIGLLLIPLAIAWLFPTVSLDSTTVAAKGYH
                     FPLAAENDTNTQNQEGTTVQYLKPDTSIYFTKSAYQNQMREIADRYLAEETIVVTNEN
                     YMEVMEAIYDYPTEFSGKTIEMIGFVYNDPDNSQQFFLFRFGIIHCIADSGVYGLLST
                     GATTEFPNNTWVKARGTIKVSYHTSLKQNLPTLELQSMVQIEQPDSPYVYRVF"
     gene            complement(13874..14779)
                     /locus_tag="U1087_000784"
     CDS             complement(13874..14779)
                     /locus_tag="U1087_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HEM4755282.1"
                     /translation="MFGLNQLPTSVLQAGAIFLSIMIEALPFVLIGAIISGFIDVFIT
                     PDKVRKLLPKNKFLAILFGTFIGFIFPSCECGIVPIVNRLLEKKVPSYTAVPFLVTAP
                     VINPIVLFATFTAFGNSLLFAFYRALGAIIVSLVLGIILGFFVKGPILKGSKFDHHQH
                     DYSDKTSWQKVGFALIHAIDEFFDTGRYLVFGCLFASLVQVYIPTAVLTTIGHSPLTA
                     ILLMMLLAFLLSLCSEADAFIGASLLSSFGFAPVMAFLVIGPMVDVKNLLMMKHYFKG
                     KFIAGFIITITLVILGYSLILGGVV"
     gene            complement(14781..14927)
                     /locus_tag="U1087_000785"
     CDS             complement(14781..14927)
                     /locus_tag="U1087_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755283.1"
                     /translation="MAITYKRQDDLEKMLEEFASFEKLEEIEYPDPKSKEHSEKNNLN
                     QDKK"
     gene            15050..17008
                     /gene="ligA"
                     /locus_tag="U1087_000786"
     CDS             15050..17008
                     /gene="ligA"
                     /locus_tag="U1087_000786"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011837172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HEM4755284.1"
                     /translation="MKTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELET
                     AYPELILPDSPTHRVGGKVLDGFEKYNHVYPLFSLQDAFSREELEAFDQRVRKEFPQA
                     TYICELKIDGLSISLTYEAGNLVVGATRGDGSVGENITENLKRVADIPLTLPEAVDIT
                     VRGECYMPKASFDRVNKQRQEAGEAEFANPRNAAAGTLRQLDTGVVAQRGLATFLYQE
                     ASPSEATSQSEVLRKLDALGFVTNHEYCLAESIDDTWDFIEKIAERRDDLPYEIDGVV
                     IKVNDLVIQEELGFTVKAPRWAVAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPV
                     QLAGTTVSRATLHNVDYIAEKDIRIGDTVIVYKAGDIIPAVLKVVDKYRKEQEIMPIP
                     SHCPSCQSDLQHYEDEVALRCINPICPSQLMSKLEHFASRDAMNIAGLGSSIVEKLFG
                     AGLVHDVADIYKLTVDDLLTLEGFKEKSADKLYQAIQTSKSNSAERLLFGLGIRHVGS
                     KASKILVEKFGDLETLAFADQEAIASLEGLGQVIAKSLTTFFASEGAQQLLAELKEAK
                     VNLTYLGQVVDENAALSGMTVVLTGKLDRMKRNEAKAKLEALGANVAGSVSKKTNLVV
                     AGIDAGSKLTKAQELGIEIKDEAWLESL"
     gene            17019..>17411
                     /locus_tag="U1087_000787"
     CDS             17019..>17411
                     /locus_tag="U1087_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YegS/Rv2252/BmrU family lipid kinase"
                     /protein_id="HEM4755285.1"
                     /translation="MEERKRARLIYNPTSGQEIMKKNVAEVLEILEGYGYETSAFQTT
                     AEKDSAKNEATRAALAGFDLIIAAGGDGTINEVVNGIAPLEKRPQMAIIPTGTTNDYA
                     RALKVPRGNPVEAAKVIGKQQTILMDIGL"
BASE COUNT         5112 a         3186 c         4244 g         4869 t
ORIGIN      
        1 gatgttcaag gagatgttta tgaaaaagtt gattcacaat aaattatttc tatctagctt
       61 tgtagcggac ttgatttcta actttggaga tacgctttac tatctggctt tgatgaacta
      121 tgttttactc ttaacagata ccaagtttgc cctggctatg attaccgcat ctgaaacctt
      181 gccgattttg gcaggcctct ttatcgggat ttgggcagac aagaccaaaa acaaattgga
      241 taccattctt gcaactctgg tggttcgtgt cggtctctat gcttttgttg gcttcttgat
      301 gggatttgca ccagccctct gggttgtggc ggtggtctgc gtcatcaact tcctgtctga
      361 ccttgctggt caatacgaaa acggtctcta tttgccagtc agcttgcggg ttgtggctgc
      421 tgaagaccgt gaaacagcta tggcttttaa gatgacggtg aaaagtcttt tgcaaattgc
      481 cttccaagct agcggtgcca ttctcatcgg ctttatgtct taccagaatc tcgccttctt
      541 caatgcaggg accttcttgg tcagccttgc catcatggca accctccgtc cagcttttgc
      601 caagttgttg aaagagaatc ctatccaaga agctgagcaa acagaaacag aagcaggtat
      661 tatcaagggc atgcgtaaca gtctcaaaga atcctaccaa gctgttcaga atattccagt
      721 tctcaaagcg tcaattgtga ccattgccag cctgaatgcc atttttaccg cactttcacc
      781 attagttatt ctaaatatga aggagttctc agactttgtg attgtcaatg caggaacaac
      841 cgttgctttg atttccattt tcttctcagt aggtagtatc ttggggtcaa gtatcggtat
      901 ggctttgttc aaaaatgtca gcttaatcaa tctcctcaag ttttctactc ttatgcctgt
      961 tttacttttc tcgggtttct ttctccacaa tatttatgtg gtattgacgg ttatttttgt
     1021 gacagctatg actttgggtg tcttcaatcc gaaaatgaat gccttggtct taaatgaact
     1081 gcctgaagat aaattggcga cagtcggtgg agggattgat gctttctgcc agattggtat
     1141 ggttgctggt caagccttgg ttgccttcat ggtgacaatt ctctctgcga ccagtatttc
     1201 cctcatcttc ctcttgcttt ctgtggtgct agtaagctat actattctta caggatctaa
     1261 acctgcaaag tcattagtga atacttagaa agaaaactat gaaattagat taccgagatt
     1321 atagaagcga aattgtcgaa aaattcttta ttcctttaat tgtcaaggag cgtgaggagc
     1381 cgtttgaggc ggatttttca cagaaagaaa aagacattct caaagatgcc ttggacattc
     1441 gtgatgagat tgaagaaaag ttggcagatt ttcgtcagga agtcaatcaa gtctttgtct
     1501 ggggacatat ttttaacatt ttgcatagtc tttatttcta tatcttgaat gatgggcagg
     1561 atccaaagac agttgaggaa gcttgtcaat tgattttaaa gctgtctcaa gaagaggtag
     1621 aagatgccat gcggactatg ctagcgtctg aaaatgacgg tcatcgtgag cagaaactca
     1681 gcctcatgga actcttggaa aagacagata aaaagccagc agataagtgg tactggtcat
     1741 tggctatccg caatcccttg gaaacggttc agcggtctgt cgctctcttg gataagatgc
     1801 ttccaaacta ccagccctat tttgagcaag caagagttga gcgggaagcc tttgctaggg
     1861 attttgacat tgaacaactc tacagagact ccaaacagtt agctatgact ggcttggatg
     1921 ctttaggagt ggaaactgct caattcttcg tcctcagtcc ttggaattat tggtttgctt
     1981 attatggcaa cgaagaattt gactatatga aagttgctct tttagcttcc tgtcgaattg
     2041 atcagattat gctgtcaaat gacgagctgg atctggatga tttgacaacg gctcttaaag
     2101 tcatcagcga tagcacgcgc tatcaggtct tggtggagct gaccaaacct catgctaaga
     2161 gcaaggacat tgcagaacgg ctcaatatta ctggagccgc tgtgtctttc catacccaaa
     2221 agttgattaa cggcgacctg cttctcttta atgccaaaga caagaatgtc aaatacagtg
     2281 tcaatcgcga cctgctccaa caggtgattg ataagttgaa agaggatttt gatttgtaaa
     2341 aaaaccttgt aagttaggtc ttacaaggtt ctttttttgt agccaatgat taaccagctg
     2401 agcagttggc aagtgatgat ggtgataagg aagactaacc acccttgctg tattttggtc
     2461 agggaactag tttctaggaa gaaaaagctg acttcgactg ggataacatg gataaaataa
     2521 taatagctgg cgtattcttt tagaaattgg aattttttct ggcggaagag gtctgtggtt
     2581 agggtccagg cgactagata ggctgtgaat ggaataaggc tgaaaataaa gtttttatca
     2641 taaccttgat tgaggtagat gattgtagct tcgcagatta aaatgactgt agaaactagc
     2701 agtttggttt tttgtcggta ttggaaaatg gggtgattga gtttgtcggc tagataaaag
     2761 cctgtcagga caaaaatcgg tgcgtagaag aggccattgc ggctggtgaa aaagaaggtt
     2821 ttgtagctgt caaatgcggt caggaaaatc gattctgcca ggtaggagga gtaggtttca
     2881 actgagccta ggagatagag gaggcaggct agacatactg tgatgcgcca gccccatttc
     2941 cttaaagaat agtgaacgag gacaagacct agcaggaagg cgggcatgta ccagagttgg
     3001 tagctggtgc cggtgtaggt cagtccgacc aggagtgcga ggggatagta gagtaggggg
     3061 attttttgga ggtttaggta gaagaggtag aagggtaggt agaggacgga ccaggtcagg
     3121 tattgtttgg agaggctagg gtagtttcgt cggaggaaga agctggcggt gaccatgaag
     3181 taggggacga ccatgcgact aaagatggat ttttgaatga agtggagctg gtctgcttca
     3241 aataacctgc gacaatggag ggcgataacg gggatggctc cgatgaactg gatgagggag
     3301 agtagtgatg tattgagtgg ttttgtctta ttttgcatgc taacgttttt ctttttttct
     3361 tccattttat cgaaatctga tgaatatgta aatgtttgca aaaagatgtg gagaggtgct
     3421 ggctgaaact tagttgacaa gagaagtcca gtggaaaata tggtataatg ttaggacgga
     3481 gtaaatgtaa accatctatt tcgtttaagt tagaaaggag catatagatg aaagatttac
     3541 atgcaaaatt attggctgat tttggaattg atttttcgga tttgaattta ttagaaacgg
     3601 cttttaccca tacttcttat gccaatgagc atcgccttct aaaaatttca cataatgagc
     3661 gcttggaatt tttaggagac gctgttctcc agttgatgat ttccaaatat ctctatcaaa
     3721 aatatcctga tagccccgaa ggtgagatgt ccaagttgcg ttcgaccttt gtacgtgagg
     3781 agtctttagc tggtttttca cgtgcttgtg gttttgatca gtttcttcgt cttggtaagg
     3841 gggaagagaa gtctggaggg cgaaatcgcg atactatttt aggagatgct ttcgaggcgt
     3901 tcttaggagc tctgctattg gacaaagggg aaaagaccgt ggaggaattt atccataagg
     3961 tcatgattcc tcgtttagaa aaagggaatt ttgagcgtgt aacagactac aagactgctt
     4021 tgcaggaaat tttgcaggtc aatggtgaga ttgctatttc gtatcaagta atagctgagt
     4081 ctggacctgc ccatgataag acctttgaag tggaggtatc tgctgatcag cgtgtgattg
     4141 gtcgtggtcg tggtcgctct aagaaattag ctgaacaagc cgccgccaaa aatgctgtgg
     4201 aggctagagg ataggtatgt atcttaaatc gattgaaatg cagggcttca agtcctttgc
     4261 ggataagact aaggtagtct ttgatcgtgg agtgactgct gttgtagggc cgaatggttc
     4321 tggcaagtcc aatattacag aaagtctacg ttgggccttg ggagagtcgt ctgctaaaag
     4381 cctacgtgga ggcaagatgc cagacgtcat cttttcggga acagaaagcc gcaaggctct
     4441 taactatgcc tcggttgtcg taaccttgga taatagcaca ggttttattg ctaataagaa
     4501 taaagaaatc aaggtagaac gccatattta tcggtctgga gatagcgagt atttgataga
     4561 tggtcagaag gttcgattgc gggatatcca tgatcttttc atggatacag gcttgggacg
     4621 tgattctttc tctatcattt cacaagggcg ggttgaagca attttcaatt ccaagcctga
     4681 ggaacgccgt gctatttttg aagaggcggc aggggtctta aaatacaaga cgcgtaaaaa
     4741 agaaacagaa agtaagctgg ctcaggctca aggcaatttg gatcgcttgg acgatattat
     4801 ctacgaattg gataatcagg tcaaaccatt ggagaaacag gcacaaactg ctaagaaatt
     4861 tctagaatta gatggtcaac gtaaggaatt atacttagat gttttggtgg ctcagttgtc
     4921 gcttggtaag gaaaagttat cgaaaaaaga agccgaacta gagtctgtca aaacggaatt
     4981 gactagctac tacaaacagc gttctgagct ggagcaagaa aatcagaact tgaaagagaa
     5041 gcgccaccgc ctttcagaac aattggagcg tgagcaggca gttcttttgg atttgaccaa
     5101 gttaatcagt gatttggagc gaaaaattga ggtccataaa ctggaatcta gtcaaaacga
     5161 atcaagtcgt caagaagcgc aggcgcgttt ggaaaacttg ttgactagac gagagcagtt
     5221 ggcagaacag attgatcaaa agcaagaaac gctcgcgcaa ttagatagtt ccttgtctag
     5281 cttgaaagac gatattgctg cggtagacaa agaaatttcc tacttttcag aagatcctga
     5341 tcaggtttta gatcatctgc gtgaacagta tgttgctctg atgcaggaag aggcagaagc
     5401 ttcaaaccgt ctgaccaaga ttcagcagga tattgccaat caaatcagtc tttctgagag
     5461 taaatctgaa gacttggcac gattgcagac ggaaaaacaa acagctcaag aagtacttga
     5521 taagagtcgg aaaagtttag aagaagctga ttacgtgtta cgccagttgc ttgagagcta
     5581 tcagaccaaa aaatcggaat tggatcaagt ccagactgct tatcaggctg agcaaggtcg
     5641 cttgtttgat ttgctggacc agttgaaagg caagcaggct cgccagtcta gtttagaagc
     5701 tattttaaaa aatcactcca atttctacgc gggagttaag gctgtcttac aggcggcacc
     5761 aatcttagga ggaattattg gagcagtcag tgaacaattg acctttgata ctcgttacca
     5821 aacggctttg gaaattgctc ttggaggtgc tagtcaaaac gtcatcgttg aagacgaagc
     5881 gactgctaaa cgagctatcg catttttgaa agaaaaacgg caaggacggg caaccttctt
     5941 acctctaaca actatcaagc cacgtcagct ttctggacag caagtctctt tactagaatc
     6001 ttcagaagga ttcttggggc ttgcaagtga tttggtgact tatcagccaa atttagatgc
     6061 gattttccaa aatttgctag gcactatcgc gatttttgat accattgacc atgccaatca
     6121 ggcagcgcgg gcaaccaagt ttcaagtgcg tatggtgacc atggatggag cggaaatccg
     6181 tcctggtgga gcctttgctg gtggtagcaa tcgaaataac agcacgacct ttatcaaacc
     6241 agaactggat gctcttttag gagaaatagc agagctgtcc agccagttac aggagcaaga
     6301 aagcttggtt gcggctaaga aaactagctt agaccagacc agagaagcct tggaaacgat
     6361 taaggcggag ggggaagaag ctagattgaa ccagcagagc gcaaggattc atcaggaaca
     6421 ggcagaaaat agactggctc agctatcagc ccagtatgac ctgcaaatga gtcaggttag
     6481 tccgaccatt ttgactgagc tagaagaggc tgctgctaag gaagaagtaa atgtccaagc
     6541 cttgaatgag aaaaaactag ccttggatca acaaatcaat caagttcgtg ataatcgcga
     6601 cagtattcaa gaaagcttgc agaaactaca gactcagaag ggtcaactaa ctttggaaca
     6661 ggctgaactg actagccaac ttcgttttga acagacagat ttgagacgtt tgcaagaaga
     6721 aaaagtggtt gcagataagg aaatttctct tttagaggat atgattgacc agaagcttga
     6781 agctcttgaa gatactagta ttgagattct tgaagaacaa ttgcaggccg catctgataa
     6841 gcaaaaccag acaaatcaga ttctaattcg cttaaagttt gaattggaag atattgatgg
     6901 gcagtttgaa gacttggaag aaagattgca acaagctcgg actaagaatg atgatttgat
     6961 tcgtaagcag gctaagctag aggcggattg tgagcaagcg ggcgataaat tacggactct
     7021 acttggtaat ttgacagagc attttaaatt gagttttgaa gctgcccagt ctcaggccaa
     7081 ggaagttgag tatcttgcag ttgctgaaca aaacctcaaa gacctagaaa gagctattcg
     7141 tgctttgggg ccagtcaatt tggatgctat tgagcagtat gacgaggtta ataatcgcct
     7201 taccttcctc aatgagcaac ggacagatat tttgtcggcg cgtgatttac tactagatac
     7261 tatccacgag atggatgatg aggtcaaaga gcgcttcaag gttacttttg aagctattcg
     7321 tgaaagcttt aagcagacat tcaaacaaat gtttggcggt ggttcagcgg atttgatttt
     7381 gacagaaggt gacctgttga ctgcgggtgt ggagatttca gttcaacctc cgggtaagaa
     7441 aattcaatct ctcaatctta tgtcaggtgg cgaaaaagcc ctttcggccc tcgctctgct
     7501 attttccatt atccgtgtta agaccattcc ttttgttatt ctcgatgagg tggaggcagc
     7561 cttggatgag gccaatgtca aacgttttgg cgactacctc aaccgttttg ataaggagag
     7621 tcagtttatc gtcgtgaccc accgtaaagg gaccatggcg gcagcggatg ccatgtatgg
     7681 ggtgaccatg caggaatctg gcgtgtccaa gattgtttcc gttaagctga aagatgtgga
     7741 gaaattatga ttaacaaaat ttacgccagt gatatggatg gtaccttttt acgagaagac
     7801 catagttttg ataaggaacg gtttcgtcgt atactgaatc agtttaagga aaaaggttat
     7861 ttatttgtgg cagcaagtgg gcgatctatg caaagcctga aacttgtttt tgaagatttt
     7921 gtagatgaaa tcggttttgt ggcagaaaat ggttcaatcg ttgaatatca ggggcagact
     7981 atctttatgg atgatccaat tagtcctgaa atctatctgc cgattatcgc gggtattgat
     8041 gcaggtccct ttggtagcag tcgttccatg gtgctgtctg gactcgaaaa cttttattta
     8101 ttaaaaaatg ctgagcctca gtttttagag acgatgacga attattatgc acattttcga
     8161 ttggtagaca catttgaaga agttcgagaa gagattataa aaatcaatgc caaattttct
     8221 cctgaggaaa tggacgatgc cagacgatgg ttaaatgata catttgaagg tgtaacggcc
     8281 atgacaactg gttttgacaa tattgatata attccaaatg gttcaaacaa atcagttgga
     8341 ttgagtcatc tctgtgctca ttttggaatt accggtcagg ctgtagtggc atttggtgat
     8401 aatcaaaacg atttagatat gtttgacttt gcaggtctgg ctcttgcgac agaaaatgca
     8461 agagaggacg tgaaggccaa ggcagattct attattggtc attgcaatga tggagcagta
     8521 ttagcctatt tagaggagga agtaaatggc aattaagttg attgcattgg atttagatgg
     8581 aacacttctg acatcggaca aacggatttc agaagctaat aaaaaggcct tgcaggcagc
     8641 gcgtgagcgt ggagtttatg tagttctgac aacagggcgt cctttacaag ctatcggtac
     8701 ttttctagaa gaactagatc tgctagggga gaatcaatat tcgattacat ttaacggtgg
     8761 tctagtacag gaaaatacag gtcgtgtttt ggataaggtt ggctttacca ttgaagatgt
     8821 gcgcaccatc cgtcgtgtga caaatgactt ggacctgcct ctggatgtcc tgtatggtgg
     8881 cgatgtctat tctctaccat cagcccatga atcactttat ctaacttgta atccattgct
     8941 taataaaatt gtggcaagcg atgaggaaat gccagaagat tttgtctaca ataaggcagt
     9001 ttcagctgtg gcagcagact ttttggatgg acaaattcca aaaattcctg cggaacttca
     9061 cgagcgcttc gagattttca aatcgcgtga tattctgctc gagtggagtc caaaaggtgt
     9121 tcataaggca aatggtctgg ctaagttgat tggacatctg gggattgatc ggtcagaagt
     9181 tatggcctgt ggcgatgaag gaaacgatct ttcgatgatt gaatgggctg gtctgggtgt
     9241 tgccatggct aatgcgactg atgaaatcaa gtctgcggcc aaagtagtct taccaaaaac
     9301 caatgatgaa gatggcattg cctgggccat cgagcactat gtattgaatg aggactatta
     9361 tgggattatt tgatcgatta tttggacaag aaaaacaaga ggagcaagtc gctcttgttg
     9421 aagaagtgga aagggagcag tcggcttcta gcgaagatac agtaactact gaagttgagt
     9481 caacgactca agaaatggaa gagttccagt ctgaagtagc agagcctgaa ttgacagccg
     9541 agcaagaagc tcagaaacaa cggaccttag acatgatggc tcaatattat gcagccaaag
     9601 aagctgctgc ggctcgagtg aaggaagcgc aggaacaagg ctttgaccct gctattcaaa
     9661 ccaaggtcaa ggaagagcct gttgaggaag ttgctccagt agagcaagaa agtgagcagg
     9721 acaagtacca gcgtaccttg aaaaagacgc gtacaggatt tggggcaagg ctcaatgaat
     9781 tctttgccaa tttccgttct gtagacgaag aatttttcga agagttggaa gaaatgctga
     9841 ttttgtcaga cgtaggtgta caggttgctt ctacgctgac agaggagctc cgctatgaag
     9901 ccaaactaca aaatgccaag aagacagatg aactccgtcg ggttatcatc gaaaaattgg
     9961 tggatattta cgaaaaagat ggtcaattca gcgagcaaat caatttccaa gatgatttga
    10021 ctgtcatgct ctttgtcggt gttaacggag ttgggaagac gacgtctatc ggtaagttag
    10081 cctacaagta caagcaggct ggcaagaagg tcatgttggt cgcagcggac accttccgtg
    10141 cgggtgcggt agcccagctg gtcgagtggg gtcgccgtgt cgatgtgcca gtagtcacag
    10201 gacctgaaaa gtcagaccca gctagtgtgg tttttgatgg ggtaaaacgt gccgtggcag
    10261 aaggcgtgga tattctcatg attgacacag caggccgctt gcaaaataaa gataacctta
    10321 tggcagagct ggaaaaaatc ggtcgtatca ttaaacgaac acttcctgat gcaccgcatg
    10381 aaaccctctt agcactagat gcctcgacag gacaaaacgc ccttagtcaa gccaaagaat
    10441 ttgcaaaaat tactccattg acaggtcttg ttttgaccaa gctagacggt actgcaaaag
    10501 gtggtgttgt ccttgccatc cgtcaggaac tggatattcc agttaagctg attggtttcg
    10561 gtgagaaaat cgatgatatc ggagaattca agtctgaaga gttcatgcgt gggcttttgg
    10621 aaggattggt gtagaatgaa aaaagtagtt aactgtgaca gttagctact tttgtgtttt
    10681 catttcctcc tcaacaatgc ctcaatccag tcgggtgcgt agggagaagt acagcctttt
    10741 ggcaccttca tatcggaata gacagcgagt tcctgaccga ttacaagtcc ctgttccagg
    10801 tagtcaggat aggcaacggc aatctctacc aagcattggt tcatggtcca ttggacaagc
    10861 gggtctgcag tttgtaaatg cttgcgaata tggtctagag tttcttcaat ttcttggttt
    10921 gttgctgttt ttccagcaaa gtatttggca cggaggaacc agccaagtct gttaaagatg
    10981 gcctcgtctt tggcaagtaa gatttcttcc caatccttgc tgtcttttcg tttgctgaga
    11041 atgatagaag ccagtttgtc taggacatta acagaaactt cttcattgag gcaattctct
    11101 aggtcagctt ggggaagctg gtcaggctta ttttttgcaa cttgaatagc taaatattgt
    11161 gcttctagga cacctgtttg ccagagtggg gcaaacaagt ccagtcgatt tttataggtc
    11221 ttggcgatac cagaaatagc tcccattgga acgccgtagt agggcttggt ttcgccaatt
    11281 ttttcataac gcttgagggt gccagcatgg ctggctactt ggagttgggt gagaatggtg
    11341 tttaattcag tcataaatat ctcccaaaaa aactggatta ctccagtttt tatatgtagt
    11401 cgtttagttt gcttttagta caaggcaacg agctgtaggc tgtactaaag tacggcaaag
    11461 cgagttaacg aagtaatcaa agataaacta aatgactatt tcaataagcc acgttcacga
    11521 taccatacat caggtgtcca aacccacttg caaccgtagc tttctagcaa atcaaaggct
    11581 gcctcaggtc ccatagttcc agctggatag gtgtggagtg ggacttggtt gcttgcccac
    11641 aaatcaacaa tgcggtcaat caagctccag cttgctttca cttcttccca atggctaaag
    11701 ttggtagaat caccgttcaa gacatcgaaa aagagtttct cgtaggcttc gggtgaattt
    11761 ccaagagcag ttgcattgtg gcggaagttg agtttggcag gagtaagagc aaagtgggaa
    11821 ccaacttcct taccgttgat agagagcatg aagccttctg ttggctggat gaagatggtc
    11881 aatacattgg cctcagaagg ctgaccaaaa atatcttccg catgcttgaa ggtgatggtt
    11941 acgcgcgtgc ccttttctgt cagacgttta cctgtacgga agaagaaagg tacatcacgg
    12001 aaacggtcag tatcaacgaa gaagacacct cctgcaaagg tttctgtctg agaaccttcg
    12061 gcaatatttg gttcatccaa gtagctaacg tagtcttttc cgtcaatgga acctgctgca
    12121 tattgaccac ggatgaagtt gcgtttgagg tcctcatcag aaggctgacg caagtgttgg
    12181 aagaccttga ttttctcagc gcggacatct tcctccttga agctggctgg cttatccatt
    12241 gctagaaggg aaaggacttg aagggcatgg ttttgcacca tatcttttaa ggcgccagaa
    12301 tgatcgtagt agcctccacg atcctcaacg ccaatcgctt cagcaaatgt aatttggacg
    12361 ttatcgatgt aatcgcggtt ccaaatatgc tcaaaaatga tattggcaaa gcgaaccgca
    12421 aagatatttt gtaccatttc cttgcctagg taatggtcga tacggtagat ttggtcttca
    12481 ttaaaagctg ctgccaattc atcattgagt ttggtagctg tagcaaggct agttccgaaa
    12541 ggtttttcaa taatcaagcg ttcaaaacct tgtccatcaa cgatttgctc agatttgagg
    12601 tgtttggcaa tggttccgaa aaattcaggc gccatagaga ggaagaagac cttgttgtgc
    12661 tgggtattgt atttttcaca caagtcgtcc tgcaatttac gaagagctac ataatgttcc
    12721 gtgtcattga cattgtggct ttggtagtag aaatgactag caaattcatg agcttgacgt
    12781 ggtgtgtcag gcagatcacc tagtgattca atgacggttt gctcaaaaaa atccttggtc
    12841 cagggtctgc gagctgtacc aattactgca aagttttcct tgatgtgtcc agccttatag
    12901 aggcgaaata aagatggata gagtttgcgc ttggcaaggt cgccactagc accaaaaatt
    12961 gtaaacaata catgtgatga cataatttca ttcctatctg ttgaatatca ttaatagtat
    13021 accacaaatt gtcagaaaat tcactttttg agttggaatt attagaaaac acggtagaca
    13081 tacggggaat ctggctgttc aatctgaacc atcgattgta attcaagtgt tgggagattt
    13141 tgtttcaacg atgtgtggta ggaaaccttg attgttcctc tggcttttac ccaagtattg
    13201 ttaggaaatt ctgtggtagc ccccgtagag agtaagccat ataccccaga atcagcaatg
    13261 cagtgaataa taccaaagcg gaaaaggaaa aattgctggc tattgtcagg gtcattgtag
    13321 acaaatccaa tcatttcaat cgtttttcct gaaaattccg taggatagtc gtagattgct
    13381 tccatcactt ccatatagtt ttcattagta acgacaatgg tttcttcagc caagtatcta
    13441 tcagcaattt cacgcatctg gttttgatag gcagattttg taaaataaat agaagtatca
    13501 ggcttgagat actgaacagt cgtcccttct tggttttgtg tattagtatc gttttctgct
    13561 gctagtggga aatgatagcc cttggcagca acagttgttg aatccaggct gaccgtagga
    13621 aagagccagg ctatagcaag aggaatgagc aatagtccaa tgcttgatag tttggcaatt
    13681 ttgcttttta aatggctatg tactcgaatt tcttttaccc agacatacaa ttgtacgatg
    13741 gcaagtatga aagataaaac catggataga taggctagat agctatagtg cagattaatg
    13801 tattggtcta attttccaga aatatagaga tacatggtca tttcaaagta acctgcaaga
    13861 attaaaaaac gaatcatact acacctccaa gtatcagact atatcccaaa ataacgagag
    13921 tgatagtaat gataaaaccg gctataaatt ttcccttgaa ataatgtttc atcatgagca
    13981 agtttttaac atccaccatg ggtccgataa ctaagaaagc cattactggg gcgaatccga
    14041 agctggatag tagtgatgca ccaataaagg catcggcttc agaacatagg gaaagaagaa
    14101 aggccagcaa catcatcagt aaaatagctg ttaatggact gtgaccgatg gtagtcagga
    14161 cagcagttgg aatatagact tgtacgagac tggcaaatag acaaccaaag actaggtaac
    14221 gtcccgtatc aaaaaattca tcaatggcat gaataagtgc gaagccaact ttttgccagc
    14281 tggttttatc tgaataatca tgctggtgat ggtcaaactt gcttccttta agaattggtc
    14341 cttttacgaa aaaaccaaga atgattccca atactaggga tacaatgatg gctcctaggg
    14401 ctctatagaa ggcgaaaagt agggaattgc caaaagcggt aaaggttgca aaaaggacga
    14461 tgggattaat cacaggagct gttactaaaa agggaacagc agtgtaactc ggcacttttt
    14521 tctctaatag ccgattgaca atagggacaa taccacattc gcaagacgga aaaatgaagc
    14581 cgataaaggt tccaaacaga atggcaagaa acttgttttt gggtaagagt ttacgaacct
    14641 tatctggtgt tataaacaca tcgataaaac ctgaaataat agctccaatc aagacaaagg
    14701 gcaaggcttc aatcatgata gacaggaaaa tagcccccgc ctgtaggacg gaggtaggta
    14761 attgattaag accgaacata ttatttttta tcctgattca agttgttttt ctcggaatgt
    14821 tcttttgatt ttggatctgg atactcaatt tcttccaatt tttcaaatga agcaaattct
    14881 tccagcatct tttctaaatc atcttgtcgt ttataggtta tagccatagg gcacctccaa
    14941 aaattttata tacacattat acatttttta ctaaaaatta tctaaaggaa tctgttttta
    15001 ttgaagcgca aatatagtta gcaccctcaa atcatgatat aatattctta tgaaaacaag
    15061 aatatcagaa ttagttagcg tgctcaatca atacgctaaa gagtattatc aattggacca
    15121 acctagcgta tcagatgcag aatatgatac gctttatcgt gaattagtag agctagaaac
    15181 ggcttatcca gaactgattt taccagatag tcctacccat cgggtcgggg gaaaggtgct
    15241 agacggattt gaaaaatata atcatgttta tcctcttttt agtttgcagg atgccttttc
    15301 tcgtgaagag ttagaagctt ttgaccagcg agttcgcaag gaatttcctc aagcaacgta
    15361 tatctgtgaa ttgaagattg atggtctatc tatttccctg acctatgaag cgggtaattt
    15421 agtcgtgggt gctacacgtg gtgacggtag tgtcggtgaa aatatcacag aaaatctcaa
    15481 acgagtagct gatattcctt tgaccctacc cgaagctgtg gacatcactg tccgaggtga
    15541 gtgttatatg ccaaaggctt cttttgaccg tgttaacaaa cagcgtcagg aggctggtga
    15601 agctgaattt gctaatccgc gtaacgcagc ggcaggaact cttcgccaat tagacacagg
    15661 tgtcgtggcc cagcgtggac ttgcaacctt cctctaccaa gaagctagtc catctgaagc
    15721 gactagtcag tccgaagtgc ttcgcaagtt agatgctctg ggatttgtga ccaaccacga
    15781 atattgcttg gcggagtcga ttgatgacac gtgggatttt attgaaaaaa tagcagagcg
    15841 tagagatgat ttaccctatg agatagatgg tgttgtcatc aaggtaaatg atttagttat
    15901 acaagaagaa ctaggattta cagtaaaagc gccacgatgg gcagtagctt acaagtttcc
    15961 agctgaggaa aaagaagcag aaatcttgtc ggttgattgg actgttggtc gaacaggtgt
    16021 tgtgacacca actgccaatc ttagtcctgt tcaactggca ggaacgactg tcagtcgagc
    16081 gaccttgcac aacgtagatt atatcgccga aaaagatatt cgtattggcg atacggtcat
    16141 tgtttataag gcaggagata ttattccagc agttctgaaa gtggtggaca agtatcgaaa
    16201 agaacaagaa atcatgccca ttcctagtca ttgtccgtct tgtcagagcg acctacaaca
    16261 ctatgaggac gaagttgccc tccgctgtat caaccctatt tgtcctagcc agctgatgag
    16321 taagttggaa cattttgcaa gtcgggatgc catgaacatc gcaggactag ggtcttcaat
    16381 cgttgaaaaa ctctttggag caggcttggt acacgatgtt gctgatattt ataaattaac
    16441 tgttgatgac ctattgacct tggaaggttt caaagaaaaa tcagctgaca agctctatca
    16501 agccattcaa acttctaaga gcaactcagc agaacgcctc ctgtttggac taggtattcg
    16561 ccatgtaggt agtaaggcaa gtaagatttt agtagaaaaa tttggtgatt tagaaacgtt
    16621 agcatttgct gatcaagaag caattgcttc gctagaaggt cttggtcagg ttattgctaa
    16681 gtctttgaca actttttttg ctagtgaggg tgcgcaacaa cttttagctg aacttaagga
    16741 agctaaggta aacttgacct atcttggaca agtagtagat gaaaatgctg cgctatcggg
    16801 tatgacagtt gtactgactg gtaaattgga tcgaatgaaa cgaaacgaag ccaaagccaa
    16861 attagaagct ttaggggcaa atgtagcggg atctgtttct aaaaaaacta atcttgtggt
    16921 tgccggaata gatgcaggca gtaaattgac taaagcacag gagctaggta tcgaaattaa
    16981 agatgaggct tggttagaga gcttgtaaag gtaaaacgat ggaagaaaga aaacgtgcta
    17041 gactaatata taatccgacc tcaggtcaag aaatcatgaa gaaaaatgtg gccgaagtat
    17101 tggaaatttt ggaaggctat ggttatgaga cttcagcttt ccaaacaact gctgagaaag
    17161 actctgcaaa gaatgaagct acacgtgcgg cgcttgcagg ctttgacttg attatcgcgg
    17221 ctggtggaga tggaacaatc aatgaagtcg tcaatggaat tgctccgctt gaaaaacgtc
    17281 cgcagatggc catcataccg actggcacca ccaatgacta tgcgcgtgct ttaaaagtgc
    17341 ctaggggaaa tcctgtagaa gcagctaagg ttattggtaa gcagcagacc attttaatgg
    17401 atattggttt a
//
LOCUS       DASFRC010000034        17014 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.034, whole genome shotgun sequence.
ACCESSION   DASFRC010000034 DASFRC010000000
VERSION     DASFRC010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 17014)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17014)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17014
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.034"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..674
                     /locus_tag="U1087_000788"
     CDS             <1..674
                     /locus_tag="U1087_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HEM4755286.1"
                     /translation="ESEIVSDLKQFRKLAKNCLMQRDYEALGFLYEREKGTLSHLNFP
                     DQVYLEWVEAVLAENLEARREDAIQKLRELLERVGENRRGYLYLYNSLLILLIRDEKN
                     AEAEQFYSEVIEKIDKNKLDLLVDIDAYFSIQSNYIRYLWLTNQLEKGIELVTACIEE
                     FKSIYPIHFLADFYCDLGNVTEDFADKQLVKKRYELSRLLYELAGIDAIALKIEKYLK
                     ETYTD"
     gene            946..3165
                     /locus_tag="U1087_000789"
     CDS             946..3165
                     /locus_tag="U1087_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase domain-containing ABC transporter"
                     /protein_id="HEM4755287.1"
                     /translation="MFKKYACTLQHDQSDCAAAVVSTVLLTYKKELSIMKIREIIGTD
                     MYGTTVHGIVSGLEKLNFTVKAVRVSLDDLTGDISFPAILQIRNSLGQNHFIVIHKIK
                     KDGNYLVADPAKGLDMLSITELEEVYQGIAIFMVPNSEFEKGNMKGKGLFDLFSALIL
                     TQKGLVGTIILASFLLSIVGILSSLFSKVIMDEIIPFGLKNSLYLFLIVFGIVSLVQS
                     LLSAFRQHILLFLSRKIDIPVLLGYYDHIIHLPYSFFGSRRVGDVLTRFQDAMTIKNV
                     FTSVSISLVMDISLSLISAFVLWHLNPTLFLILVMIVIVNIVLIYCFKKPYKKINNEQ
                     MEANSMLNSQLIESIRNIDTIKSQHDERQRLDKLEENFVHTLEIGYKEGFLQNIQSTI
                     SSIAGTLGNLIFMGVGALFIIDNKMTIGDLLVFQTLSQYFTEPVQNLVGLQLTFQEVQ
                     VAVSRLQELMDVEREDSQVGNSIHNFSLLEDIVFKNVSFAYGSRPPIIRDFSLIIKQG
                     EKIAFVGESGAGKSTLVRLLLHFIQPIEGQIKFGEYDLGDLDYGELRKRIAYIPQIVE
                     LFSGTIIDNLKIGNPEASYEDMIRVCRIVGIHDTIQKLQNRYGSFVEEGGQNFSGGEK
                     QRLAIARALLSKADLYIFDEATSNLDSFSEQIIQNLIFEKIIGKTTVVVAHRLSTILR
                     CDKICFLEDGKIAEYGTHDELMKLGGRYATMVGLQSIQLDKQEKTVATSWSEEVVYE"
     gene            3158..3625
                     /locus_tag="U1087_000790"
     CDS             3158..3625
                     /locus_tag="U1087_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM4755288.1"
                     /translation="MSKLEVLENKKLVLKKVICKKLSSLQFEDLEQEIDKFYQHLQLL
                     KVQMFGPLIVKNSGTILHEDGTITVDYDLYVQAHDFRQYDKFYTVYEEIVCPHCVYVR
                     FEDSPEYLQYAYSKLDLHFYENDLETNGIIYTVYVNTNNETMTVDIFRPIISL"
     gene            3622..5025
                     /locus_tag="U1087_000791"
     CDS             3622..5025
                     /locus_tag="U1087_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001865356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HEM4755289.1"
                     /translation="MKLYNKSELRYSRIFFDKRPPAYAFILIFSTLATLIIAFAVSAY
                     LPKNYIVKARGTSVITGTEYVSALSNGKIVTLHKKEGDSVKAGEVILSLSSGQEGLQT
                     ESLTKQLDKLKAKESLFQKYEQSLNEKVNYMANSGEEQEYYGKVEYYLSQLSSENYND
                     GSQYAKLQEEYTKLNKLVAEKSQLETDLSSYQSQLANLEAELATLSVQETAETNSDSE
                     TNSSSTDSSPNSIQLEQLNTKISEVKTKIETITSSIQGKGTEIESLQSSIREMERSYN
                     DPTSQAYNTYAQLISELGTARAANNKSITELEANLGISTGQDRGLTVSASSDGTLHYV
                     TPLKQGMSVQQNQTVAEIAGSDREAYIEAFVLATDISRVTVGAEVDIAITGVNSQKFG
                     TLKGAVTQIDSGTITQETQNGNVSLYKVVVALEELTLQKDEEIVVLQKDMPVEARIVY
                     DNETYLDWILELLSFKQ"
     gene            5155..5460
                     /locus_tag="U1087_000792"
     CDS             5155..5460
                     /locus_tag="U1087_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000424403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755290.1"
                     /translation="MELVLPNNYVALEQEEIMYLDGEGWIADSFAVGGGVIKGFVWAV
                     QTASYASALGTVALPIVGTVSVGTLGAISGAVTGYITGYKTGRWLGRWIETNILGWK"
     gene            5863..6207
                     /locus_tag="U1087_000793"
     CDS             5863..6207
                     /locus_tag="U1087_000793"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755291.1"
                     /translation="MELVMPNNYVVLEEEEMMYLDGGWSASVLGNNLWGAAKKFAVVF
                     SVVNAMAKSLGYVNAGALAALKGSFSFIVGKISWAIGKFVGIIGGFWTGFLAGFSAGA
                     ALTYLGNNRVFY"
     gene            6209..6460
                     /locus_tag="U1087_000794"
     CDS             6209..6460
                     /locus_tag="U1087_000794"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755292.1"
                     /translation="MNTLYIFVALSLNVVVLNQLYLLYKKKEELNATVAFLVCLLVTV
                     LPSAQDFHGLLGLITGALVIVYLGSFVYSRLAPKKRTAK"
     gene            complement(6515..7378)
                     /locus_tag="U1087_000795"
     CDS             complement(6515..7378)
                     /locus_tag="U1087_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEM4755293.1"
                     /translation="MKIDIRIPQAFPQLTVKEVLEDYFLIPRKIRHFLRTKKHVRVNG
                     ELINWQSPIAAGDLLELTFDQEDYPEKSIPLGQADLVEELYQDEHLIIVNKPEGMKTH
                     GNEPTEIALLNHVSAYVGQTCYVVHRLDMETSGAILFAKNPFILPILNRLLEDKVIYR
                     DYLALCQGQLKKTHWTITDKIGRDRHDRRKRVVDNRKGQAALTQVRRLKTLGKNSLVS
                     CRLQTGRTHQIRVHLSHHGHALVGDPLYSRVAAPRLMLHAQKLSLTHPLTLEEISVEA
                     RSESFEKVLRK"
     gene            complement(7380..8348)
                     /locus_tag="U1087_000796"
     CDS             complement(7380..8348)
                     /locus_tag="U1087_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000081018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM4755294.1"
                     /translation="MTQVYDITIIGGGPVGLFAAFYAHLRQAKVKIIDSLPQLGGQPA
                     ILYPEKAILDIPAFPSLTGQELTDNLLAQLAPFDTTICLNETLTAIKPGETITLTTNK
                     GCHQTKTLIIAMGGGAFKPRPLEIDGADSFDNVHYHVSNIQQYADKDIVVLGGGDSAV
                     DWSLAFEKIAKTTHIVHRRDNFRALEHSVEELKQSSVTIHTPFIPKGLSGENGRASAI
                     DFDKVKSEDKLTLSFDHLFVNYGFKSSIGTLKEWGLELNRHRITVNSKQETSVPGIYA
                     IGDCCFYEGKIDLIATGLGEAPTAVNNAMNYLNPNEKVQPKHSTSL"
     gene            8501..10714
                     /locus_tag="U1087_000797"
     CDS             8501..10714
                     /locus_tag="U1087_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HEM4755295.1"
                     /translation="MDDLQYQPIEVPEDFQIDHEDRPSRRRRGNRGSVDKPKKKSRIP
                     EPIRKFWRRYQLTKILIILMVLTVLTVGGYLFFLAKTANVGDLQQALKATTIIYDKDG
                     AEAGTLSGQKGTYVELDAVSDNLENAVIATEDRSFYKNSGINYQRTILAALTLGRSGG
                     GSTITQQLAKNAFLTQDQTISRKAREFFLALEINKKYSKQEILTMYLNNAYFGNGVWG
                     VEDASQKYFGIPASDLTLEQAAVIAGMLKGPEIYNPYYSLENAVNRRDTVLQNMVNAG
                     YIDQATADAGFQVDLASQLSDTYTGKQSNYSYPSYFDAVIAEAIERYGLKESDIINNG
                     YRIYTEMDQNSQASMQVIFNDETMFPTSSFDGTHAQAASVALDPRTGGVRALVGRVNS
                     SEDAVFRTFNFATQAKRSPGSTIKPLVAYAPAVAAGWSIDMALDNHTETYGDYTLHNY
                     DYSTSDTIPMYQALALSYNLPVAYIVNTLGIDKAFEYGQKFGLDMENVEKVLGVSIGS
                     GVETNPLQMAQAYATFANKGVMKDAHLITRIETASGKVLAEHRETSTKVIDRSVADKM
                     TAMMLGTYTNGTGVTADAANYYIAGKTGTTETSFDVNLVNDQWHIAYTPDLVISQWVG
                     FEQTDENHYIDSSSYWMAPSVFQTVANSILPYTAGTQFEVENAYAQNGIVEVAPDEAA
                     QTESSLGQEQVQEISDQARNLIEQTKQNLIDAQLPERAKTLWDNITSWFGELSNP"
     gene            10748..10900
                     /gene="rpmG"
                     /locus_tag="U1087_000798"
     CDS             10748..10900
                     /gene="rpmG"
                     /locus_tag="U1087_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015912025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEM4755296.1"
                     /translation="MALKKASLACTVCGSRNYSISLSSNPKPTRLEVNKFCKHCGQYT
                     VHKETR"
     gene            10910..11086
                     /gene="secE"
                     /locus_tag="U1087_000799"
     CDS             10910..11086
                     /gene="secE"
                     /locus_tag="U1087_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HEM4755297.1"
                     /translation="MKFIKDIIRILKDTSWPTRKQSWTDFVSVVEYTAFFVAVVYLFD
                     LILSRGIMSLINLF"
     gene            11196..11735
                     /gene="nusG"
                     /locus_tag="U1087_000800"
     CDS             11196..11735
                     /gene="nusG"
                     /locus_tag="U1087_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HEM4755298.1"
                     /translation="MYDSFDKGWFVLQTYSGYENKVKENLLQRAHTYNMLENILRVEI
                     PTQTVQVEKNGEVKEVEENRFPGYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKP
                     TPLLEEEIRQILVSMGQTVQEFDIDVKVGDVVRIIEGAFSGYEGKVAEIDNNKVKMVI
                     SMFGNDTIAEVNLNQIADL"
     gene            11880..16940
                     /locus_tag="U1087_000801"
     CDS             11880..16940
                     /locus_tag="U1087_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEM4755299.1"
                     /translation="MKQKWFQIESKQRFGIKKLSVGVASVSIGFFITGVPMVQADTSG
                     EELQPRVMLARAMDSKQDAEVEKEDEPVKMEQVDEPVAEEEVVAEVVDTEAEEESGFL
                     ADRAVTEIEVVVDKTREETREKEDFNVKETSAPQTSPQESQLEPEEVTRGRYILQFSD
                     ENRNLVLDKLKKIDGVKIVHEYKEVLTGASVEVGKESLSDVKAITELTYLEESRRIRP
                     TLHTAKQLVGALKASSKYQTDGRGMVIAVIDSGLDIKHKDMRLDEGVVPKIKEITPST
                     TGTYTLKVPHGYNYVSGNDNLYDDTHEPHGMHIAGTLAGNATDEEVASKQGIDGIAPN
                     AQLLVYKIFSNDPKNYKAETEDAAYAAIEDAIKHGADVISLSVGYYDSGLPGNAYYTI
                     AKRAAEKGIIITAAIGNAGASSSDTSFDLHTNNALGAVDTATTVGVAATPAVIGVGSA
                     RNTHLVQREFMLNGQSFGYYPIGYTTLPEGNYEFVDAGNGHWEEVQGLDLAGKVAVIK
                     KDKFDLKDAVRNLKFKDVAGIIVINTDQGWNKDYYRTHQLLVDDKTLLSYSSIWGISL
                     SGEDGRRLLEVANQSQGNTGLVLKPTIGMKKLIEVPTVSGFSSWGPTVNLELKPEIVA
                     PGEDVYATLNDNRYGSMSGTSMASPIVAGASALLLPRIRQMTPPEGMTRMDLLRIILM
                     NTATPLIDVLDSSGHALENSPRQQGAGLLQIDRAFETDVILHHRLKGGVELKEIGRET
                     EFEVTLENLGNQQRNFAISAGKVLTSQDVPVDRIGRSGKVVKEIHATEIKGSSLHLSE
                     QSIQLGPKEKKTIRLRLDAGEAKDQFAEGYIYFKSLTEGQSDISIPYFGFVGDWSKER
                     IVDAPAWETSSKLKLTSVLSSYKHNKSGRYIELGREKIQDNQSPLNPDNIAIQNQHSD
                     SQIGNAFVRFALLRDITNYDLDIVKEATEDAPVLRRIDTGTMLSRVRYVDYFESLSEY
                     SKLRTPIELHRWDGKVYDASKDENIPAPEGQYFFRLRVKNKENGAYQYTYLPVKIDNQ
                     KPEIVAIDTNRLTSHRELVVTAKDNNKVWEVRANLNGEDLLVEKVVDDAGQLHYHLKE
                     VELPLDAKNHLRVEVMDIAGNVVAVEKDLVAPVIQFKNLEDLMAIRSKKTVEIKANVS
                     AQVSDVQANLDAQAVNYSLENGQLSLQIPEQSDGHHSFELILKDKDGNPIYTKTLNYL
                     VDNEKPTIDLDIEKDEEDEEVIQIGKNGRFTLKGKVSDNVSLPKNIKLYYSNLDIGKG
                     KLKIIDVKEDGSFEQDFFKSDFPRAIILTAVDEKGNKLKDLRINTSPESLDEEEETEV
                     PITVNNWLIDPIRFNKESLGRELDSGLVDFKKQEDGTYLFTFEIEAETDQAHSVRING
                     GEKRYFEDGKLTYPVTLIEEGNVVDISVYNEADELTYTKKYQMLVDTENPVLQLENEV
                     LPLERQVVDSEEDEDEENQYAGVLLADADGHLTLTGSAKDNGIYWSLKINEDFVARGG
                     FWRQYGNNEKAFRYELHSLKDGDTVKLDLSDSFGNALVKKYKVRLNDKEVSEQVPEKD
                     LHVEQSDKDQAPSIPILKSEAYVPMPKEENSLAPQTESTEIALLTGDTREDGVEHLGR
                     FTKHEEALGISDERIEVSVPHREFFERSGRGETGALAADTSGKLPQTGDSLGSVFISA
                     LLGLFGGAMALGNLKRKE"
BASE COUNT         5233 a         2870 c         4001 g         4910 t
ORIGIN      
        1 aggaaagcga aattgtctct gacttgaaac agtttagaaa acttgccaaa aactgtctta
       61 tgcaaagaga ttatgaggct ttgggctttc tatatgaaag ggaaaagggc accctatctc
      121 atctgaactt tccagaccaa gtttatttgg aatgggtgga ggctgtttta gcagagaatt
      181 tggaagcaag gcgagaagat gctattcaga aattgaggga gttactggaa cgagttgggg
      241 agaataggag aggctacctc tatctgtaca atagtttatt gattctattg attcgagatg
      301 agaagaatgc tgaggcagag caattctata gtgaggtaat cgaaaagatt gataaaaata
      361 agttggattt attggtggat atagatgctt acttcagtat tcagtccaac tacatccgct
      421 acctatggtt gacaaatcag ttggaaaagg gaattgagct ggttacagcc tgcattgagg
      481 aattcaagtc aatctatcct atccatttct tggcagattt ttattgtgac ttaggaaatg
      541 tgacagaaga ctttgcggat aagcaactgg tcaaaaaacg ctatgaacta tcacgacttc
      601 tttacgagtt agcaggcatt gatgctattg ctttgaaaat agaaaaatac ctcaaagaaa
      661 cctatacaga ttgagcttgc tccagagggg caggcttctt tttatatcaa aaatataaca
      721 ataataaatt ttgttagaaa aatatcaaaa aacattgaca ataggtaacg aaacggttat
      781 actatagaaa agaaaggggt tacaaaatga aaagaatagt taagagtgtt ttggtggtgg
      841 gattactagc ggttatttta attagagttc cacaattgcc gagagttttt ggtgtagata
      901 gagaagaaat atttatctat gcaaaatagt tagggcggag tatatatgtt taaaaaatat
      961 gcttgcactt tgcaacatga ccagtcagat tgtgcagcag ctgttgtctc cactgtatta
     1021 ttgacctata aaaaagaact ttcaataatg aaaattcggg aaattattgg aacagatatg
     1081 tatggaacga ccgttcacgg aattgtttct ggtcttgaaa agttaaattt taccgtaaag
     1141 gcagttcgag tatccttgga tgacttaact ggagatatta gctttccagc tatactacaa
     1201 atacggaata gtctggggca gaatcatttt atagtgattc ataagataaa gaaagatggt
     1261 aattatttgg tagctgatcc agcaaaagga ctggatatgc tttcaattac agaacttgag
     1321 gaagtttatc aaggaatagc cattttcatg gttccaaata gcgagtttga aaaaggaaac
     1381 atgaaaggca aaggactatt tgacttattt tcagctctga tattaacaca gaaaggactt
     1441 gtggggacaa tcatcttagc atcattcttg ctaagtatcg ttggtatttt gtctagtctt
     1501 ttttccaaag ttattatgga tgagattatt ccctttggat taaagaacag cttatactta
     1561 ttcttgattg tttttggcat cgtttcttta gtgcagagtc tcttatctgc ttttaggcaa
     1621 catattttgc tatttctatc aagaaaaatt gatattcctg tgctcctggg ctattatgac
     1681 catattattc acctacctta tagttttttc ggtagcagaa gggtgggtga tgtcttgaca
     1741 cggtttcaag atgccatgac gataaagaat gtttttacct cggtttctat ttcgttagtt
     1801 atggatatta gcctatcact gataagtgcc tttgttttat ggcatctcaa ccccacttta
     1861 tttctaatat tggttatgat agtgattgtg aatatcgtgt taatttattg cttcaagaaa
     1921 ccttataaga agattaataa tgagcagatg gaagcaaact ctatgcttaa ttcgcaattg
     1981 atagaatcta ttcgtaacat agataccata aaatcacagc atgatgaacg acaacgtttg
     2041 gataaactag aagagaattt tgttcacacc ttagaaattg gctataaaga aggtttttta
     2101 caaaatattc aatctacaat ttcttctata gccggaactc tagggaattt gatttttatg
     2161 ggagtgggag ccttatttat tattgataac aagatgacaa ttggtgatct tcttgttttt
     2221 cagaccttga gtcagtattt tactgagcct gttcagaatt tggttggtct ccaacttact
     2281 ttccaggaag ttcaggttgc tgttagccga cttcaagaat tgatggatgt tgagcgtgaa
     2341 gatagtcaag tagggaatag tatccataat ttttcgttat tggaagatat tgtcttcaaa
     2401 aacgtttctt tcgcttacgg gtctagaccg cctattattc gagattttag tttgataatc
     2461 aaacaaggtg aaaaaatagc ttttgtaggt gaaagtggag caggaaagag tactcttgta
     2521 cgacttcttc ttcatttcat tcagcctatt gaaggtcaaa taaagtttgg tgagtatgac
     2581 ttaggggatc tagattatgg agaattacgg aaaagaatag cttatatccc tcaaatagtc
     2641 gagctctttt cagggactat aattgataat ttaaagatag gaaatccaga agctagctat
     2701 gaggatatga tacgtgtatg ccgcatagta gggattcatg acacaattca aaaattacaa
     2761 aaccgatatg gttcttttgt tgaagaaggt ggccagaatt tctcaggagg agaaaaacaa
     2821 cgtcttgcta ttgcccgagc tcttcttagt aaagcagatc tttatatttt tgatgaagca
     2881 acttccaatc tagattcctt tagtgaacag attatccaaa atttaatatt tgaaaaaatt
     2941 attggcaaga cgacagttgt agtggcccac agattatcaa cgattctacg ttgtgataaa
     3001 atctgttttt tggaagacgg gaaaattgca gaatatggga cgcatgatga gttgatgaag
     3061 ttgggtggcc gctatgcaac aatggttggt ttacaaagca ttcaactaga taagcaagaa
     3121 aaaacagttg ctactagctg gtcagaagag gtggtatatg agtaagttag aagtattaga
     3181 aaacaagaaa ttagttttga aaaaagtgat ttgtaagaag ctaagtagcc ttcagtttga
     3241 agacttggaa caagaaatag ataagtttta tcagcactta caattactga aagtgcaaat
     3301 gtttggccct ttgattgtaa aaaatagtgg aactattctt catgaagatg ggactattac
     3361 tgtagactat gatttgtatg tccaagctca tgattttcgc cagtatgata agttttatac
     3421 tgtttatgaa gaaattgttt gtccacattg tgtctatgta cgatttgaag atagtccaga
     3481 gtatttgcaa tatgcatatt ctaaactaga tttacatttc tatgaaaatg atttggaaac
     3541 aaatggcatt atttacaccg tctatgtcaa tacaaataat gaaaccatga cggtggatat
     3601 ttttagaccg attattagct tatgaaacta tataacaaat ctgaacttcg ttattctaga
     3661 atcttcttcg ataagcgtcc tccagcctac gcgtttatcc taatctttag tacactagct
     3721 actttgatta tagcttttgc agtatctgcc tatttgccta aaaattacat agtcaaagct
     3781 agggggactt ccgtgataac aggaacagag tatgtatctg ctctgagcaa tgggaagatt
     3841 gtgacacttc ataaaaagga aggggatagt gtaaaagctg gtgaggttat tctttctcta
     3901 tctagtggac aagaaggact tcagactgaa tctttaacta aacaattgga caagctcaaa
     3961 gctaaagaga gtctctttca aaagtatgaa cagtctctga atgaaaaagt taattatatg
     4021 gcaaattcag gtgaagagca ggagtattac gggaaggtag aatattatct atctcaactt
     4081 agctcagaaa actataatga tggtagtcaa tatgctaagt tgcaggaaga gtacactaag
     4141 ttgaataaat tagtggcgga gaaaagtcaa ttagaaacgg acttgtctag ttaccaatcg
     4201 caacttgcta atttagaggc agaattggca actctttctg ttcaagagac agcagaaacg
     4261 aattccgata gtgagaccaa ttcatcatct actgactctt ctcctaatag cattcagttg
     4321 gagcagctaa atacaaaaat atcagaagtc aaaacaaaaa ttgaaacgat aacttcttct
     4381 atacagggaa aggggacgga aatagagtcc ctacagtcta gtattaggga gatggagcgt
     4441 tcttacaatg atcctacttc tcaagcttac aacacttatg cccagttaat cagtgagtta
     4501 gggacagcaa gggcagccaa taataaaagc ataacagagt tagaagctaa tttagggatt
     4561 tccacaggtc aggatagagg gctaactgtt tctgcctcca gtgacggaac tctacattat
     4621 gttactccgc tcaagcaagg catgtctgtc caacaaaatc agactgtcgc tgaaattgct
     4681 ggtagtgata gagaagccta tatagaagct tttgttcttg cgacagatat ttcccgtgtt
     4741 actgttggtg cagaggtaga catagctatc acgggtgtaa atagtcagaa atttggtacc
     4801 ttaaaaggtg ctgtaactca gattgactct ggaacgatta ctcaggaaac tcagaatggt
     4861 aatgttagtc tttacaaggt ggttgttgct cttgaagaat taactctaca aaaagatgaa
     4921 gaaattgtag ttttacaaaa agatatgcca gttgaggctc gtatcgttta tgataatgaa
     4981 acctatttgg attggattct agaattgctg agttttaaac aataatggtt ttacaccttt
     5041 gtagcagata aatcccaaca gagtggatga aagacccctc tgttagaatg agaaacgttg
     5101 cttatatcca gttagaggat cgcatctaac catgaatttt aaaggagaat ttttatggaa
     5161 ttagtactac caaataatta tgtggctctt gaacaagaag aaataatgta tcttgacgga
     5221 gagggatgga ttgcagattc gtttgctgtt ggtggaggag taattaaggg atttgtttgg
     5281 gctgtccaaa ctgcttcata tgcgagtgca ttaggaactg tagctctacc gatagtagga
     5341 actgtttctg tcgggacact tggagcaatc tcgggagcgg ttacaggata tattactggt
     5401 tataaaactg gcagatggtt aggtcgttgg attgagacaa atattcttgg atggaagtaa
     5461 gatgttaaaa aaaacaacct ttgacaagat ttccaaagtt atatttacta tacaaccaat
     5521 ctctattgtg ttcttcttta ttcaagtgga atcgtggtgg tatttctgga tactattaat
     5581 tttgttttta tttgatttta tgtttgttgt ttaccttata tggtactatc tttataaaaa
     5641 aatattaaag aaaaatcaaa aaaataagtg ataaagaaac ctatttggat tggattctag
     5701 aattgttgag ttttaaacaa tagtggtttt acatctttac agtagataaa tcccaacagt
     5761 gtggatgaaa ggcccttctg ctatctaggt aaagaatgag aaacgatgat tatatccagt
     5821 tagaggattg cgtctaacca tgatttttaa aggagaattt ttatggaatt agtaatgccg
     5881 aataattatg tagttcttga agaagaagaa atgatgtacc ttgatggggg atggagtgct
     5941 tctgttttag gaaataatct ttggggagca gctaaaaaat ttgcggtagt attctcggtt
     6001 gttaatgcaa tggcaaaatc attgggttat gttaatgcgg gtgctttagc tgccttaaaa
     6061 ggaagttttt catttattgt aggtaagata tcctgggcaa ttgggaagtt tgtagggata
     6121 attggtggat tttggactgg atttttagct ggatttagtg caggagcagc attgacttat
     6181 cttggtaata atagggtatt ttattaagat gaatactctc tatatatttg ttgccctatc
     6241 gctaaatgta gttgtgctga accaactcta tctcctttac aagaagaagg aagagttgaa
     6301 tgctacagtt gcctttctgg tttgcttact cgtgactgtt cttcccagtg cacaggactt
     6361 tcatggactt cttggcttga ttacaggagc tcttgttatc gtctatttgg gaagttttgt
     6421 ctattccaga ttggctccta agaaaagaac tgctaaatag atattactga cacgtaaaaa
     6481 ctcactattt caactgatga aatagtgagt ttctttactt tctcaacacc ttctcaaaac
     6541 tctctgaccg tgcttctaca ctgatttctt ccaaggtcag cgggtgggtc aggctgagtt
     6601 tttgggcgtg gagcatgagg cggggggctg cgactcgact gtaaagcggg tcaccgacta
     6661 gagcatgacc atgatgagac aaatgcaccc gaatctgatg tgtccttcct gtctggagac
     6721 gacaggaaac tagactattt ttaccaaggg tcttcaggcg gcggacctgg gtaagagctg
     6781 cctgcccctt gcggttgtcg accacccgct ttctgcggtc atgccgatcc cgtccaatct
     6841 tatcggtaat agtccagtgt gtctttttta gctggccttg gcagagggcg agatagtcac
     6901 ggtagataac cttgtcctcc aaaagccgat tgagaatggg caggataaag ggatttttag
     6961 caaagagaat ggctccgctg gtttccatat caagtctgtg gaccacatag caggtctgac
     7021 cgacataggc ggacacatgg ttgagcaggg caatttccgt cggctcattg ccgtgggttt
     7081 tcataccttc aggcttgttg acgataatca aatgctcatc ttgatagagt tcttccacca
     7141 agtccgcctg tcctagagga atgctttttt caggataatc ttcctggtca aaggtcaatt
     7201 ccagcaggtc gcctgcggca atcgggctct gccagtttat cagctcaccg ttgacacgga
     7261 cgtgcttctt ggtgcggagg aagtggcgga tttttctggg aatgagaaaa taatcttcca
     7321 agacttcttt gacagtcagt tgtggaaagg cttggggaat gcgaatgtca attttcatct
     7381 tataggctgg ttgagtgctt gggttgcact ttttcgtttg gattgaggta gttcatggca
     7441 ttgttgactg cggttggggc ttcgccaaga ccagtcgcaa tcaggtcaat cttgccctcg
     7501 tagaagcaac agtcaccgat ggcatagata ccagggacgg aggtttcttg cttactgttg
     7561 acggtaatgc ggtggcgatt gagttccaat ccccattctt ttagcgtgcc gatagatgat
     7621 ttgaaaccgt agttgacaaa gaggtggtca aaagacaggg tgagcttgtc ctcgcttttt
     7681 accttatcga aatcaatggc agaagctctg ccattttccc cagaaagccc tttagggata
     7741 aaaggtgtgt ggatggtgac gctggactgc ttgagttcct ctacgctgtg ttcaagggcg
     7801 cggaagttgt cgcgacggtg gacaatgtga gtagtcttag caattttttc aaaggccagg
     7861 gaccaatcga ccgcagaatc accaccaccc aagacgacga tgtccttgtc ggcatactgc
     7921 tggatattag acacgtggta atggacgttg tcaaagctgt cagcaccatc aatctccagc
     7981 ggacgtggct tgaaggcccc gccacccatg gcgataatca gagtcttggt ctggtggcag
     8041 cccttgttgg ttgttagggt aatggtttcc ccaggtttga tagcagtcag ggtttcattg
     8101 aggcagatgg tagtatcaaa tggagccagt tgagcgagga ggttgtcggt caactcttgt
     8161 cctgtcagac ttgggaaggc aggaatgtcc aaaatggcct tttcaggata gagaatggca
     8221 ggctggccac ccagttgggg cagggagtca atgattttga ccttggcttg acggaggtgg
     8281 gcgtagaaag cggcgaataa accgactgga ccgccgccga tgatagtaat gtcatatact
     8341 tgtgtcatgg gaatcctctt ctttgttcag aatgacccta ttttatcata tttttggaaa
     8401 attttctctg tctgttgtca caagttatcg caggcttttt tctgctagtt tttaggaaat
     8461 ggtgtataat ggtacaaaat tcactagaaa gaggtaaagt atggacgatt tgcaatacca
     8521 gccaatcgaa gttccagaag atttccaaat tgatcatgaa gaccgaccta gccgtcgccg
     8581 caggggaaat cgtggctctg ttgataaacc aaagaaaaaa tcacgtattc cagagccgat
     8641 tcgtaaattt tggcgccgtt atcaactgac taaaatttta atcattttaa tggtcctgac
     8701 agttcttaca gtaggtggct atctattttt ccttgcaaag acagctaatg ttggtgattt
     8761 acaacaggcg ctaaaagcca caacgattat ttacgataaa gatggtgcgg aagctgggac
     8821 attgtctggt cagaagggga cctatgtaga gctggatgct gtctctgata atttagagaa
     8881 tgccgttatc gctacagaag atcggagctt ctacaaaaat tcaggcatta attaccagcg
     8941 tacaattttg gctgccttga cgttaggtcg gtctggaggt ggttcaacta ttacccagca
     9001 attggcaaaa aatgcctttc taactcagga tcagaccatc agtcgaaagg ctcgagaatt
     9061 ctttttggct ctggaaatca ataaaaagta cagcaagcaa gaaattttga ccatgtatct
     9121 caacaatgcc tactttggaa acggtgtttg gggagtggaa gatgcaagtc aaaagtactt
     9181 cggtattcca gccagtgatc ttactcttga gcaagcggcc gtcatagcag gtatgctcaa
     9241 gggacctgag atttataatc cttattattc tctcgaaaat gcagttaatc gtcgggatac
     9301 agtcctgcaa aatatggtca atgctggtta tattgatcaa gcgactgcag atgcaggttt
     9361 ccaagtagac ctagccagtc agctttcaga tacctataca gggaaacaaa gcaattattc
     9421 ctatccatcc tattttgatg ctgtgattgc tgaagcgatt gagcgatacg gactgaaaga
     9481 atcagacatt attaataacg gctataggat ttacacagag atggatcaaa attctcaagc
     9541 cagcatgcag gtgattttta atgatgagac tatgttccca acatcaagtt ttgatggtac
     9601 ccatgctcag gctgccagcg tagctcttga tcctaggact ggtggagttc gcgccttggt
     9661 tggtcgagtt aacagttcag aggatgcggt ctttcggact ttcaactttg cgacacaagc
     9721 caagcgcagt cctggttcaa caatcaagcc tcttgttgcc tatgctccag cagtagcggc
     9781 gggctggtcg attgatatgg ctctggataa ccatacagaa acctacggcg attacacctt
     9841 gcataactat gattattcga cttctgacac cattccaatg tatcaagctt tggctctctc
     9901 ttacaattta ccagtagctt atatagtgaa caccttgggg attgacaaag ccttcgagta
     9961 tggacaaaag tttggacttg atatggaaaa tgtcgagaaa gttttgggtg tttcaattgg
    10021 ttctggagtg gagactaatc ctctgcaaat ggcccaggcc tacgctactt ttgcgaataa
    10081 gggtgtgatg aaggatgccc acctcatcac tcgtattgaa actgctagtg gaaaggtttt
    10141 agcagagcat cgagaaacaa gtaccaaggt gattgaccgc tctgtcgcag ataagatgac
    10201 agcaatgatg cttggaacct ataccaatgg tacaggagtg acagcagatg cggccaatta
    10261 ttatattgct gggaaaacag gaacaaccga aacgagtttt gatgtcaatc ttgtcaatga
    10321 tcagtggcat attgcctaca cacctgattt ggtcatcagt cagtgggttg gttttgagca
    10381 gacagatgaa aatcattata tagatagcag tagctactgg atggctccat cggtcttcca
    10441 gactgtagcc aattcaatct tgccatatac tgcaggaact cagttcgaag tagaaaatgc
    10501 ctatgcacaa aatggtattg tagaagtagc tccagatgaa gctgcgcaaa ctgaatcaag
    10561 ccttggtcaa gaacaggtac aagaaatttc agatcaggcg agaaacttga ttgagcaaac
    10621 caaacaaaat ctaatcgatg cccagttacc agaacgagca aaaaccttgt gggataacat
    10681 cacgtcttgg tttggagagt tgtcaaatcc ataaaaacat ggtagaatga aaaagatgga
    10741 gggctttatg gcactaaaaa aagcaagcct agcctgtact gtttgtggtt ctcgaaacta
    10801 ttcaatcagc ctttcgagca atcccaagcc aacacggtta gaagtaaata aattttgtaa
    10861 acactgtgga caatacactg ttcacaagga aaccagatag gagtcacgca tgaaatttat
    10921 caaagacatt atccgcattt taaaagatac gtcttggcca actcgtaagc agagctggac
    10981 ggatttcgtg tctgtagtgg aatatactgc ctttttcgta gcggtggttt acctctttga
    11041 cttgattttg tcacgaggaa tcatgagctt gatcaatctt ttctagaaaa tacttgccat
    11101 ttgtaaaatg gaagtgatat aataaggaaa agcgaaagcc ttcgggcttt ttttagcgtc
    11161 taaaaattcc gtgtttccaa agaaaggaag taacaatgta cgatagtttt gataaaggct
    11221 ggtttgtttt acagacctac tcaggatatg aaaataaagt gaaggaaaac ttgctccaac
    11281 gtgcccacac ttataacatg ttggaaaaca tccttcgtgt agaaattcca actcagactg
    11341 ttcaggttga aaagaacggt gaggtcaagg aagtagaaga aaaccgtttc cctggttatg
    11401 ttttggttga gatggttatg accgatgaag cttggtttgt ggttcgtaac acgccaaacg
    11461 ttacaggttt cgtgggttca cacggtaacc gttcaaaacc aactccactt ttggaagaag
    11521 aaattcgtca aatcttggtg tctatggggc aaaccgttca agaatttgat attgatgtca
    11581 aagttggaga tgttgtgcgg attatcgaag gtgccttctc tggttacgaa ggaaaggtgg
    11641 cagagattga caacaacaag gtgaagatgg ttatctctat gtttggtaat gataccattg
    11701 ctgaagttaa tttgaaccag attgctgact tgtaataaat atgtaaaagc acagggaaac
    11761 ttgtgctttt tcttgttgtt gaggtagggt tcaaaaaaac ttgccaaata tttgaaaaaa
    11821 ttataaaatt aggtatactt aatttataaa ttaaccaaaa ttaaaaaacg gaggttttta
    11881 tgaaacaaaa gtggtttcaa atcgagagta aacaacgctt tggcatcaag aagttaagtg
    11941 tcggcgtggc atcggtatca ataggctttt ttatcacggg tgtcccgatg gttcaagcag
    12001 atactagcgg agaagaattg caacctaggg ttatgctagc aagggctatg gacagtaagc
    12061 aagatgctga ggtagagaaa gaagatgaac ccgttaaaat ggagcaggtg gatgaaccag
    12121 ttgctgaaga ggaagtggtc gcagaagttg tagatacaga ggcagaagaa gagtcaggtt
    12181 ttctcgcaga tcgagctgtg acggagatag aagttgtagt tgataaaaca agagaggaaa
    12241 caagagaaaa agaagacttt aacgtaaaag aaaccagtgc tcctcaaaca agcccgcagg
    12301 aatcacagct tgagccagaa gaggtgacaa gagggcgcta tattttacaa ttttccgacg
    12361 agaaccgaaa tcttgtattg gataaattaa agaaaattga tggtgttaaa attgttcatg
    12421 agtataagga agttttaacg ggagcatctg tagaggtggg gaaagaaagt ttgtctgatg
    12481 tgaaggcaat taccgaatta acctatttag aagagagtcg ccgtatacga ccgactcttc
    12541 atactgctaa acagctggtt ggtgccttaa aagcaagttc taaataccag acagatggtc
    12601 gcggaatggt gattgcggtc attgactctg gtttggatat taagcacaaa gacatgaggt
    12661 tggatgaagg tgtcgtccct aaaatcaagg aaattactcc atctacgacg ggaacataca
    12721 cactgaaagt tccccatggc tataattatg tatctggtaa cgataatctc tacgatgata
    12781 cccacgaacc acatggtatg catattgcag gaaccctggc tggaaatgca acagatgaag
    12841 aagttgcgtc taaacaggga attgacggga ttgctcccaa tgcacaacta ctagtctaca
    12901 agattttttc aaatgaccct aaaaattata aagctgagac ggaggatgcg gcctatgctg
    12961 ctattgaaga tgctatcaaa cacggggcag atgtcattag tttgagcgtt ggttattatg
    13021 atagcgggct gccagggaat gcttactaca cgattgctaa gagggcagca gaaaagggga
    13081 ttatcattac agcagctatt ggtaatgctg gtgcctcctc ttcagacacc tcctttgact
    13141 tgcatacaaa taatgcctta ggagctgtgg atacggcaac aacggttggt gtggcagcga
    13201 ctcccgcagt tatcggggtt ggttcggcaa gaaataccca tcttgttcaa cgtgaattta
    13261 tgctgaatgg gcagtctttt ggctactatc ctattggcta tacaacactt ccagagggaa
    13321 attatgaatt tgtagatgct ggaaatggtc attgggaaga agtgcaaggg cttgatttgg
    13381 ctggtaaagt agcggttatc aaaaaagata agtttgactt gaaagatgct gttcgtaatt
    13441 tgaaattcaa ggatgttgct ggaattattg tgataaatac tgatcaggga tggaacaagg
    13501 attattatag gacccatcag ttgttggtag atgataagac tttgctttcc tactcctcta
    13561 tctggggaat tagtcttagc ggggaagatg gaaggcgatt attagaagtt gccaaccaat
    13621 cgcaaggtaa cactggtttg gttcttaaac ctacaattgg aatgaagaag ttgattgaag
    13681 tgccgactgt atcaggcttt tctagttggg gacctacggt caacttagaa ttgaagccag
    13741 agattgtggc gccgggagag gatgtttatg caaccttgaa tgacaatcgt tatggctcca
    13801 tgtcagggac ttcgatggct tcgccaattg tggcgggtgc cagtgcactt ttattgccac
    13861 ggattcgcca aatgacacca ccagaaggca tgactaggat ggatttgctg agaatcattt
    13921 tgatgaatac tgctacccct ttgattgatg ttctagattc atctgggcat gctttggaaa
    13981 attctccgag acaacaaggt gctggtctgc tgcagatcga tagagccttt gaaacagatg
    14041 tgattcttca ccaccgtcta aaaggagggg tggaattaaa agaaataggg cgtgagacag
    14101 aatttgaggt gaccttggaa aatctgggaa accaacaaag aaactttgct atttcagctg
    14161 ggaaagtatt gactagtcaa gatgttcctg ttgatagaat aggacgttct ggaaaagtag
    14221 ttaaagagat tcatgcgaca gaaatcaagg gttcgagtct tcatctttct gagcaatcta
    14281 ttcaactggg gccgaaagag aagaaaacca ttcgcctgag attggatgca ggagaagcga
    14341 aagaccagtt tgcagaaggg tatatttact tcaaatcatt gacggagggg cagtcggaca
    14401 tcagcattcc ttattttggc tttgtgggtg actggtcaaa agaaaggatt gttgatgcac
    14461 cggcttggga aaccagttct aaattgaaac tgacctcggt tttatctagc tataaacaca
    14521 ataagtctgg gcgctatatt gaacttgggc gtgaaaagat tcaagataat caatcgcctc
    14581 taaatccaga caatatcgca attcaaaacc agcattcgga tagtcagatt gggaatgcct
    14641 ttgttcgatt tgcactattg agggatatta ccaactatga tttggatatt gtaaaagaag
    14701 ctacagaaga tgctcctgtt ttaaggcgga ttgatacagg aactatgctg tctcgtgttc
    14761 gctatgtaga ttattttgaa agtctatcgg agtattccaa gcttcgtact ccgatagaat
    14821 tgcatcgttg ggatgggaaa gtgtacgatg caagcaagga tgaaaatata ccagcaccgg
    14881 aaggacaata tttctttaga ttgcgggtaa aaaataaaga aaatggggcc tatcagtata
    14941 cctatctgcc agtcaaaatt gataatcaaa agccagaaat tgtcgcgatt gataccaatc
    15001 gtctgaccag ccatagagaa ctagtcgtca cagccaagga taataataaa gtttgggagg
    15061 ttcgagctaa tctaaatgga gaagatcttc ttgttgaaaa ggttgtagat gatgcaggtc
    15121 aactacatta ccatctcaaa gaagtggaac tgccactcga tgctaaaaat catctccgtg
    15181 ttgaggtgat ggatatagcg ggtaatgtgg ttgctgttga aaaagacttg gtggcgcctg
    15241 taatccagtt taaaaatttg gaagatttga tggcaattcg cagtaagaaa actgtagaaa
    15301 ttaaagcgaa cgtctcagcg caagtttccg atgtacaggc taacttggat gctcaggctg
    15361 tgaattactc tcttgagaat ggtcaactat ctctccagat tccagagcaa tcagatggac
    15421 atcatagttt tgaattaatc ttgaaagata aggatggcaa ccctatttac actaaaacct
    15481 tgaattattt ggtagataat gaaaagccga cgattgatct tgatattgaa aaagatgaag
    15541 aggatgaaga ggttatccag attggcaaaa acgggcgttt tacattgaag gggaaagtga
    15601 gtgataatgt tagtcttcct aagaacatca aactttacta ttccaatcta gacattggta
    15661 agggaaagct gaaaatcata gatgtaaaag aagacggcag ttttgagcaa gacttcttta
    15721 aatctgattt tcctagagcc atcatattaa cagcggtaga tgagaagggc aataaattaa
    15781 aggaccttcg tatcaataca agtccagaga gtctggatga ggaggaagaa acagaagttc
    15841 cgattactgt caataactgg ttgattgacc cgattcgttt caataaagaa agtcttggtc
    15901 gtgagctaga tagcgggttg gtcgacttca aaaagcaaga agatgggact tatctattta
    15961 catttgaaat agaagcagaa acggatcaag ctcattctgt gcgcatcaat ggtggcgaaa
    16021 aacgctattt tgaggatggc aagttgacct atccagttac cctgattgaa gagggaaatg
    16081 ttgtggatat aagtgtgtac aatgaggcgg atgagttgac ttacacgaag aaatatcaga
    16141 tgttggttga tacagaaaat cctgttttac agctggaaaa tgaggtgcta ccattggaaa
    16201 gacaggtagt ggatagtgaa gaagatgaag acgaggaaaa tcagtatgca ggagttctcc
    16261 tggcagatgc tgatgggcac ttgacactta ccggaagcgc caaggataat ggaatttatt
    16321 ggtccttgaa gatcaacgaa gattttgtag ctcgaggagg cttctggagg cagtatggaa
    16381 ataatgaaaa agcctttcgc tatgagctac atagtctgaa agacggggat acagtcaaac
    16441 ttgatttgag tgacagtttt ggaaatgctc ttgtgaagaa atataaggta cggttaaatg
    16501 acaaggaagt atctgagcaa gttcctgaaa aagaccttca tgtggagcaa tcagataagg
    16561 atcaagcccc tagcattcct attctgaaat cggaagcgta tgtaccaatg ccaaaagaag
    16621 agaattcact tgctccgcaa acagaatcca ctgaaatcgc gctgttaact ggcgatacaa
    16681 gagaagatgg tgtggagcat ttggggagat ttacaaaaca tgaggaggca ctaggaattt
    16741 ctgacgagag aatagaagtg tccgtacctc acagagaatt ctttgaaaga agcggaagag
    16801 gagagacagg tgcattagcg gcggatacta gtgggaaact gcctcaaact ggggatagcc
    16861 ttggaagtgt ctttataagt gctttgttag gtctatttgg tggagctatg gccctcggaa
    16921 atctgaagcg aaaagaatag caaaaaacct aggaagattc ctaggttttt tagaatatta
    16981 aaaggcggta gacggatttt atacccttga tgta
//
LOCUS       DASFRC010000035        16947 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.035, whole genome shotgun sequence.
ACCESSION   DASFRC010000035 DASFRC010000000
VERSION     DASFRC010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 16947)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16947)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16947
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.035"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..168)
                     /locus_tag="U1087_000802"
     CDS             complement(<1..168)
                     /locus_tag="U1087_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003002781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3042 family protein"
                     /protein_id="HEM4755300.1"
                     /translation="MAKGFGKGFLTGVLSTVALAAGAVFTVHKTIIEPEEKKEAFIEE
                     NRKKAARKRVAH"
     gene            237..1121
                     /gene="miaA"
                     /locus_tag="U1087_000803"
     CDS             237..1121
                     /gene="miaA"
                     /locus_tag="U1087_000803"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HEM4755301.1"
                     /translation="MKTKVIVVIGPTAVGKTALGIDLAQRYNGEIISGDSQQVYRKLD
                     IGTAKASPEEQAAAVHHLIDVREVTEGYSAYEFVAEAKALIAGITSRGKLPIIVGGTG
                     LYIQSLLEGYHLGGQVDQEQVLAYRAELDCLSDEVLETMAEQAGLMVEGNSRRRIIRG
                     LELKKFGKNLENTESEYEPLYICLTDDRQVLYDRINQRVDKMMAAGLLDEVSWLYQEH
                     PEAQAAMGIGYKEFFPYLAGQISLEEAVDKVKQNSRRFAKRQLTWFRNRMQVPFYSVG
                     EPDYKSQIFTAVEEFLND"
     gene            1114..2364
                     /gene="hflX"
                     /locus_tag="U1087_000804"
     CDS             1114..2364
                     /gene="hflX"
                     /locus_tag="U1087_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HEM4755302.1"
                     /translation="MIETQKEQERALLVGVELQQTDNFDMSMEELASLAKTAGALVKG
                     VYTQKREKYDSKTFVGSGKLDEIAQMVEADEIDTVIVNNRLTPRQNVNLEEILGVKVI
                     DRMQLILDIFAMRARSHEGKLQVHLAQLKYMLPRLVGQGIMLSRQAGGIGSRGPGESQ
                     LELNRRSIRNQIHDIERQLKTVEKNRATVRERRLQSGVFKIGLIGYTNAGKSTIMNAM
                     TDKQQYEADELFATLDATTKQINLADKFNVTLTDTVGFIQDLPTELISAFKSTLEESM
                     NVDLLLHVIDASDPNHSEQEQVVLDILKDLDMLDIPRLALYNKLDKTDDSFTPSQFPH
                     VMLSAKAENAKGHIQMMVLAKIKTMFERFEVRVPLAEAYKLHDLATLALIENRTYEED
                     VEVVSGYIASSNKWTLEEFYDGLS"
     gene            2348..2977
                     /locus_tag="U1087_000805"
     CDS             2348..2977
                     /locus_tag="U1087_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HEM4755303.1"
                     /translation="MTDYLDLAMKYGGFTSLDKVYLANKLAGMTDQQKLDFITPPPSV
                     INAYFAEIYQKQGAEEATDYYLTLSQQLSLFPKEPSFAEDKPFVRLNLSGKSFGFAYV
                     SADGLAQVFSEGVEEVTDSLLFEIAQVFPHYAVFVEEGKIFMKVNPFEEAELAEVETD
                     YLLTQVATAKGLVKISGFNQEEVLEVADGYAGQHYYVWSGRSAILYIKH"
     gene            2988..3917
                     /locus_tag="U1087_000806"
     CDS             2988..3917
                     /locus_tag="U1087_000806"
                     /EC_number="3.1.26.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000354350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Z"
                     /protein_id="HEM4755304.1"
                     /translation="MQIQFLGTGAGQPSKARNVSSLALKLLDEINQVWLFDCGEGTQN
                     QILETTIRPRKVAKIFITHLHGDHIFGLPGFLSSRSFQSSEEQTDIDIYGPVGIRSFV
                     LASLKVSGTRLPYRIHFHEFDVDTVGQVLETDKFTVFAEKLDHTIPCVGYRVIQKDLE
                     GTLDAEALRAAGVPFGPLFGKIKNGQNVTLEDGTEIIASDYISPPRPGKVVTILGDTR
                     KCYASVRLAVNADVLVHEATYGKGDEKIARKHGHSTNMEAAQVAKDAGVKQLLLNHIS
                     PRFLSKDISQLRKDASTIFEQVHIVKDLEEIEL"
     gene            3914..4669
                     /locus_tag="U1087_000807"
     CDS             3914..4669
                     /locus_tag="U1087_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM4755305.1"
                     /translation="MRTILITGASGGLVQEMVPLLKDDFLILLGRDVAKIEQLYAYHD
                     KKAVFDVDIRDEIALTAFFDELDSQFGQIDILVNNAGYAIYDDFENFSSQQVQAMFDI
                     NTFALMTLCRLVGKRMKARRSGQIINIISMSGLIASSKSSVYSATKFAAMGFSNTIRL
                     ELAQYGVTVTTVNPGPIATSFFDQADPDGSYQESVKAFLLQPDYVAKKIVAAMGTRKR
                     EINLPWSLAAAHKLYTLFPRIADYLASTVFNLK"
     gene            complement(4713..7898)
                     /locus_tag="U1087_000808"
     CDS             complement(4713..7898)
                     /locus_tag="U1087_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM4755306.1"
                     /translation="MKLSYKKRLLNQVLLASTVLLAASLAQGTVFANTEEIPPTTSET
                     VTPLPEETPIMETSTSEATDNLVEGKETEKQTEEIADTSPTPVSTEEDTTSSEPNAEE
                     TTLRTANNDNQNTTEEKTAVPTIDTITLETKTVYLSEAVTITESVTLPDTTEKIEWTL
                     DGKPISEWKTWNLKEGDFTGDTFITVEESRQDNQLHLNIQLAALFGEDLSKRTPSNIR
                     RTYRHFIKDMLLEGTSADGNLIISKTLHFRPYEAYRTHEEMLTEIEETKNNAATDRLV
                     RIESIGQSAEGRDIKMAVVAKDQASIDKYLTETTPLMLTQPDQMLKQLQAGTFDYKLP
                     ILINNTHADEQPGIDVVTSLFKEFSQKDTITFPSTDADGNPVTLHLKVTDLLDKFIFL
                     FNFTENPDGDVKNLRSLVNGLDPNRDTGFQVNPETQAIVRQIHKWNPISVLDIHGFVS
                     GFLIEPATPPHDPNFEYDLLADIMLEKAHEMGRAGIANSKYERYTIPKVHWGDGWDDS
                     FSGYTAVYAMYHGILGHTIEIPEGNQESFKAGFFAVLGGVHNMATKPDTLMEMRLKYY
                     SRGVNKVEDPKAEAELVGPDGAVVGRVKKDQPKFFPDYYVIPMTLDKHNDMQEAFKMI
                     EYFNRNGVVVKELTEDVGNFRKGDLVVDMAQAKRGFANHVLYAGSDESAWGAMYAELV
                     VNFPDMKGFSAKAVFEENAFSGKLGSITWTKAPRTTEIDFKAPYYVVANTSESAVQAI
                     NQAIKSGAKVYLTDDGYIMETSQFSHLLDTYALYGEPLYKKPIGQELKPMKVYAPSHF
                     YSWAGDFAILANAALAVERMGFEIVNSADEADAIILESDQFDASVFGKKPIIIVGGVA
                     MQKLEELGILAGFNAEQFTDGGDYEGLMRAIIDDKDPLTSGYAMNGLFYSNSGNWIEG
                     IPEGFKILVKIADKDYYIAGWWPGHDKLANKIVAIAGNYQDQPVFIYAGNPTNKVHPV
                     HFFRWVSNALFGSQLATLEDLPAVEILVPQPEMPKNILDEAPKNTTVVHTTKSTDEKQ
                     LPQTGEKTNYIAIALGSLLLGSIALRRKERS"
     gene            8114..9661
                     /gene="cls"
                     /locus_tag="U1087_000809"
     CDS             8114..9661
                     /gene="cls"
                     /locus_tag="U1087_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase"
                     /protein_id="HEM4755307.1"
                     /translation="MEKLWKIIYSRTFIVISLIILTIFLILWLVGSAATYMPALLIVL
                     QIFSIFVAISIINRPMNTSFKLIWIIFVIGIPIFGALFYFILQSNIETKRYRKNFHKQ
                     AQRLREYSKTSEKVMKALEQEDKEQLKLAHFMSEYVGYPIHTNTAAVYFSTGQEKFEA
                     LLEELKKAEQYIFMEYFIVDMGYMWDSILDILKEKAAQGVEVRFMYDGMNSLTNLPYN
                     YYKTLRKYGIKAKVFSQIIPALSTVQNNRDHRKIAIIDGKVAFTGGINIADEYINKKV
                     RFGYWKDAAIMIRGEAVANFTLMFLQMWNYNEKTETDDLKYLKTHKDLETETVDAEGF
                     FLPYGENPFDGDEVAKRVCLDMIQSATDYIYIMTPYLVLDDEMIDNLTYAAKRGVEVR
                     ILLPHIYDKKSAYLAARTDFPTYLEAGIEIFEFQPGFVHSKVVLVDDKKATVGTVNMD
                     FRSFYLNFECGLYIYNHSAVLAAIKDDFTHSFKKSQQINLLTFHKTYSWYKRLGGALL
                     RIISPLL"
     gene            9818..12031
                     /gene="recJ"
                     /locus_tag="U1087_000810"
     CDS             9818..12031
                     /gene="recJ"
                     /locus_tag="U1087_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HEM4755308.1"
                     /translation="MIKPNFEWQLLTGFSDEQFIKIAKKEGVDPVAAKLLYERGIHSA
                     EELHTFLQPSLEDLHDPYLLHDIDKAVERIRRAIEDYEQILIYGDYDADGMTSASILK
                     ETLEEMGAEVQVYLPNRFTDGYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQ
                     EMGVDVVVTDHHSMQETLPNAYAIVHPEHPEGNYPFKHLAGCGVAFKLACALLETVHA
                     DLLDLVAIGTIADMVSLTDENRVMVKYGLSLLKQTERAGLQELIKIAGIDIDSIDEET
                     VGFQLAPRLNALGRLDDPNPAIELLTGFDDEEAHQIALMIDSKNVERKDVVQAIYDEA
                     KTMLRQDRPVQVLAKEGWNPGVLGIVAGRLLEELQQPVIVLSIEDGKAKGSARSVEAV
                     DIFKALKDHQDLFIAFGGHAGAAGMTLEVDKLEELALTLTDYIIENKLDLSSKSSLVL
                     DEELDLEELTLDTLKSFEKLAPYGMDNKKPVFYIRDFQVESARTMGQNNAHLKLRITK
                     GAAGFDVLAFGKGNLALEFSQAKGLELAVTLSVNQWNGNTSLQLMLVDARVNGVQLYN
                     IRGKQHPIPAGVPILDIENPVADNKAIVLANLPEDLSSLRSYFQEREFEAIYFKNEIA
                     KPYYLDGYGSREQFAKLYKTIYQFDEFDVRYKLKDLAVYLKIKDSLLVKMIQIFQELE
                     FVTITDGVMRVNKDAQKREISESQIYQELKETVIQQELMALGTVQEIYEWLCGRV"
     gene            12010..13179
                     /locus_tag="U1087_000811"
     CDS             12010..13179
                     /locus_tag="U1087_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3114 domain-containing protein"
                     /protein_id="HEM4755309.1"
                     /translation="MAMWSRLMTVEALVVVGVIGTLLYTYWFIRQKGLLKNLEQITEI
                     KHALIELRRVGWSERAIKKVFLKQLLPLKQEDIPAFVQNFIKEATIFASTSFYQLIRV
                     DSRSLSQEKATALLEQCMNMLDFPEELSHGILPELLQKMDVNCPPHHPFWGDFAKLVD
                     KAFPVRELEVKRPLNRQVHQLRYLISYQQAFWVRQQFGKGNTDWQALIAYLRSLPRWS
                     YRLRESARLHNKQLFGKKNQKTLPVNMKILIHFHSEFILNQDGQFALILEERPHVNGV
                     VNGASFNYARANNKRHRQLDMAPVGRQDPVFRKELLRSKMGVYLSPTRFRRYQKGRNE
                     VGWEQSYFNQQGSFSYGGHSRAACVANLRRRFAKDIGLKCTKKQFHGIMKSKNYF"
     gene            13194..13706
                     /locus_tag="U1087_000812"
     CDS             13194..13706
                     /locus_tag="U1087_000812"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001049318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HEM4755310.1"
                     /translation="MNLKDYIATIPNYPKEGIEFRDISPLMADGNAYSYAVREIVQYA
                     TDKQIDMIVGPEARGFIVGCPVAFELGIGFAPVRKPGKLPREVISADYEKEYGVDTLT
                     MHADAIKPGQRVLIVDDLLATGGTVKATIEMIEKLGGIVAGCAFLIELDDLKGREAIG
                     DYDYKVLMHY"
     gene            13810..14751
                     /locus_tag="U1087_000813"
     CDS             13810..14751
                     /locus_tag="U1087_000813"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HEM4755311.1"
                     /translation="MPIKIEKSLPAVEILRKENIFVMDSDRASHQDIRPIKILILNLM
                     PQKIVTETQLLRLLANTPLQLEVEFLYMASHESKNTHSDHLKQFYKTFEQVRDSYFDG
                     LIVTGAPVENLPFEEVDYWQELTQVFDWSKTHVYSTLHICWGAQAGLYARYGVPKHSM
                     SRKLSGVYCQEVTNPTSPLMRGFDDEFRSPHSRYTEVREVDIAHLSGLTILSQGPEVG
                     LSILASKDLREIYSFGHLEYDRDTLAKEYQRDCIAGKNPHLPENYFKEDDPTSKPSLS
                     WNLPAAQFFTNWVNYAVYQETPYDWHIFEQSAQSASL"
     gene            14761..15435
                     /locus_tag="U1087_000814"
     CDS             14761..15435
                     /locus_tag="U1087_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaD domain-containing protein"
                     /protein_id="HEM4755312.1"
                     /translation="MNYSQQFRQGHLVLPAAILFHYQELFPSADDFLIWQFFLYQNSS
                     AIESLAPSEIAQATGKTVAQVNQAIENLQDAGLLEFKTISIAGEIEMIFDALPAFEKL
                     DVLLTPKQAVEIVQPENDLKTLVGDFERELGRFLSPFEIEDLQKTIEDDKTSIDLVRA
                     ALKEAVFNNKTNWKYIQAILRNWRREGITTVAQVEAKNAEREIQTPKNVTVSSDFLDA
                     MDLWKD"
     gene            15437..16120
                     /locus_tag="U1087_000815"
     CDS             15437..16120
                     /locus_tag="U1087_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenine-N(1))-methyltransferase"
                     /protein_id="HEM4755313.1"
                     /translation="METKLSKRLETVASFVPQGARLVDVGSDHAYLPLFLVEQGRIDF
                     AIAGEVVQGPYQSALQNVEQAGQTEKILVRLANGLGAFETSDQMTAVTIAGMGGRLIA
                     EILEAGKEKLATIERLILQPNNREDDVRRWLEKNGFRLVSEKILEENGKLYEVLVAES
                     GQMRLSEVEHRFGPYLLEEASPVFVKKWRRELEKLSSALEQVPSERQGDRFAISQKIQ
                     QIQEVVHVS"
     gene            16110..16904
                     /locus_tag="U1087_000816"
     CDS             16110..16904
                     /locus_tag="U1087_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000881127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HEM4755314.1"
                     /translation="MLASQVIERYQAFCPPSLAMEGDVKGLQIGTLNKEIQRVMVALD
                     IRETTVAEAIDKKVDLIIVKHAPIFRPINDLVADNPQTKMYLDLIKHDIAVYVSHTDI
                     DVVEGGLNDWFCELLEIQDTTYLIETAEGQGLGRVGTIAEQTLEELALKVKSVFDLDA
                     VRLVTYVHQAKQYVSRVAICGGSGGSYYHEALAKGADVYITGDIYYHTGQDMLTQGLL
                     AIDPGHHIEALFIKKIAELLEIWKAKEGWDVEILPSTVSTNPFRHL"
BASE COUNT         4844 a         3244 c         3892 g         4967 t
ORIGIN      
        1 atgtgctaca cgtttacgtg cagctttttt acgattttct tcaatgaaag cttctttctt
       61 ttcttctggt tcaatgattg ttttatgaac agtgaagact gcgcctgctg caagagcaac
      121 tgtagaaaga acacctgtta agaaaccttt accaaaacct ttagccatag ttatttctcc
      181 tttacttgtg ttataataga ttttagcgaa aaaacaaaat attttcaagg aaaaagatga
      241 agactaaagt tattgtggtc attggaccga cagcggtagg aaaaactgcc cttggcatag
      301 acttggccca gcgctacaat ggagaaatta ttagcggtga tagccagcaa gtctatcgca
      361 aactggatat cggtacagca aaggctagcc ctgaagagca ggctgctgcg gttcatcact
      421 tgattgatgt ccgagaggtg accgagggct attcggctta tgaatttgta gcagaagcca
      481 aggctttgat tgcaggcatt accagtcgtg gtaagctgcc tattatcgtg ggtgggacag
      541 gtctttacat ccagagcttg cttgaaggct accatctagg cggtcaagtt gaccaggagc
      601 aagttcttgc ttatcgggcg gaactcgact gcttgtctga cgaggttttg gaaacaatgg
      661 cagagcaggc aggtttgatg gtcgagggaa acagccgacg gagaatcatt cgtgggttag
      721 agttgaaaaa atttggcaaa aacttagaaa atacagagtc agaatatgag cctctttaca
      781 tctgcctgac ggatgacaga caggttcttt acgaccgcat caatcagcga gtggataaga
      841 tgatggcggc gggcttacta gatgaagtta gctggctcta ccaagaacac ccagaagccc
      901 aagctgctat gggaattggc tacaaggagt ttttccccta cttagcaggt caaatcagcc
      961 tagaagaagc agttgataag gtcaagcaaa atagtcgccg ctttgccaaa cgccaattga
     1021 cctggttcag aaatcggatg caggttccct tttattcagt aggcgagcca gattacaagt
     1081 cgcagatttt cactgccgtg gaggaatttt taaatgattg aaacgcagaa agaacaagaa
     1141 cgcgccctcc tggttggagt ggaattacag cagacagata attttgacat gtccatggag
     1201 gagttggcaa gtcttgccaa gacggctggc gctctggtaa agggagtcta cactcaaaaa
     1261 cgtgaaaaat acgacagcaa gacctttgta ggctcaggga aattggatga aattgcccag
     1321 atggtcgaag ctgacgagat tgataccgtc attgttaaca atcgactgac accccgccag
     1381 aatgtcaatt tggaggaaat tctgggggtt aaggtcatcg atcgtatgca gttgattttg
     1441 gatatttttg ccatgcgggc acggagtcac gagggaaaac tgcaggtcca cttggcccag
     1501 ctcaagtaca tgttgccacg cttggttgga cagggcatca tgctcagccg tcaggcaggt
     1561 ggtatcggct ctcgtggacc aggtgaaagc cagttggagc tcaaccgtcg tagcattcgc
     1621 aatcagattc atgacattga gcgccaactc aaaacagtgg agaaaaatcg ggcgactgtc
     1681 cgtgaacgcc gtctgcaatc aggcgtcttc aaaatcggct tgattggcta taccaatgct
     1741 ggtaagtcca ctattatgaa tgccatgacg gataagcaac agtacgaggc ggacgaactc
     1801 tttgccacgc ttgatgccac gaccaagcag attaacttgg ccgacaagtt caatgtgacc
     1861 ttgaccgata cggttggttt cattcaggat ctgccgaccg agttgatttc tgccttcaaa
     1921 tccaccttgg aagagtccat gaacgtggac ctcttgctcc atgtcattga cgcctcagat
     1981 cccaaccaca gcgagcagga gcaggtggtc ttggatattt tgaaagatct ggatatgctg
     2041 gacattcccc gtctggctct ctataacaag ctggacaaga ccgatgacag ctttacaccc
     2101 agtcagtttc ctcatgtcat gctgtccgct aaggctgaaa atgccaaagg ccatatacag
     2161 atgatggtct tggccaagat taagaccatg tttgagcggt ttgaggtcag ggttccactt
     2221 gctgaagcct ataaattaca tgatttagct actctggctc tgattgaaaa tcggacttat
     2281 gaagaggatg tggaagtggt atcaggctat atcgcttcca gcaataaatg gacgttggaa
     2341 gaattttatg acggattatc ttgatttggc aatgaaatac ggtggcttta ccagtctgga
     2401 caaggtctat ctggcaaata aattagctgg tatgactgac caacaaaaac tagattttat
     2461 cacgccaccg ccttcagtta tcaatgccta ttttgcggaa atctaccaga aacaaggagc
     2521 agaagaggcg accgactact atctgactct ttctcagcag ctgagccttt ttccaaaaga
     2581 acccagcttt gctgaggaca agccctttgt ccgcctgaat ttatctggta agtctttcgg
     2641 atttgcctat gtgtcggcgg acggtctggc ccaggttttt tcggaaggag tagaggaagt
     2701 gacggatagc ttgctctttg aaatcgccca agtctttcca cactatgccg tctttgtgga
     2761 ggagggcaag attttcatga aagtcaatcc ctttgaggaa gccgagttag cggaagttga
     2821 aacagattac cttttgaccc aagtggcgac agcgaaaggt ttggtcaaga tttcaggctt
     2881 taatcaggaa gaagtgctgg aagtggcgga cggctatgct ggtcagcatt actatgtctg
     2941 gtcgggtcgc tctgcaattt tatatataaa acattagaaa gtaaacaatg caaattcaat
     3001 ttttaggtac gggggctggt cagccctcca aggctcgaaa tgtatccagt ttggccttga
     3061 aactcttgga tgaaatcaat caggtttggc tatttgactg tggcgaagga actcaaaatc
     3121 aaattttgga aacgactatt cgtccacgta aggtcgcaaa aatcttcatc actcacctgc
     3181 acggagacca tatttttggc ttgcctggtt ttttgtctag ccgttctttc cagtctagtg
     3241 aggagcagac ggatattgat atttacggtc ctgttggcat ccgttccttt gttttggcaa
     3301 gtcttaaagt atcagggaca cgcctacctt atcgcattca ttttcatgag tttgatgttg
     3361 atacggtagg tcaggtccta gaaacggaca aattcacggt attcgctgaa aagctggacc
     3421 ataccattcc ttgtgtcggc tatcgtgtca tccagaaaga tttggaaggg acattggatg
     3481 cagaggctct gcgcgcggca ggtgtaccat ttggtcccct ctttggtaaa atcaaaaatg
     3541 gtcaaaacgt gacgctagaa gatgggactg aaattatcgc gagtgactat atttctcctc
     3601 ctcggcctgg taaggtagtg accattcttg gtgatacgcg caagtgttat gctagtgtcc
     3661 gtctggcagt caatgccgat gtgctggtgc atgaggcgac ttacggaaaa ggcgatgaga
     3721 agattgctcg caagcacggg cattcgacca atatggaagc cgctcaggtt gccaaggatg
     3781 ctggtgtcaa gcagctctta ctcaatcata tcagtccacg atttttatcc aaggatatta
     3841 gtcaattacg gaaagatgca agtactattt tcgagcaggt tcatattgtc aaagatttag
     3901 aggaaattga gctatgagaa ccattctaat cacaggtgct tctggtggct tggtacagga
     3961 aatggtgccc ttgctgaaag atgatttttt gattttacta ggtcgtgatg tggcgaaaat
     4021 cgagcaactc tacgcctacc atgacaaaaa ggctgtcttt gatgtggata tccgagatga
     4081 aatagctctg acggcatttt ttgatgaact ggatagtcag tttggtcaga ttgatatttt
     4141 agtcaataat gctggctatg ccatttacga tgattttgag aatttttcca gccagcaggt
     4201 gcaagctatg tttgacatca atacctttgc tctgatgacc ttatgtcgtt tagtaggtaa
     4261 acgaatgaag gcaagacgga gcgggcagat tatcaatatc atttccatgt caggcttgat
     4321 tgcgtcaagc aagtcctcgg tttattcggc gaccaagttt gcagctatgg gtttttccaa
     4381 taccattcgc ttggaattag cccagtatgg tgtgacagtt actacggtca atccaggtcc
     4441 aatcgcaacc agctttttcg accaagcaga tccagacgga agctatcaag agagcgtcaa
     4501 ggcttttctg ctccagccag actatgttgc caagaagatt gtggcggcta tgggaactag
     4561 gaagagagaa atcaacctgc cttggtcact agcagctgct cataaactct atactctctt
     4621 tccgagaata gcagactact tggccagtac agtatttaat ttaaaataag catagaaaaa
     4681 cgccgaaata aaactcggcg ttttcgtgta gactagctac gctcttttct acgtaaggcg
     4741 atactgccta gaagtaggct acctaatgcg atagcgatat agtttgtttt ttcacctgtt
     4801 tgaggtagtt gtttttcatc ggtagacttg gtggtatgta ctactgtagt attttttggt
     4861 gcttcatcca aaatattttt tggcatttca ggttgtggaa caagaatttc tacagctggt
     4921 aagtcttcta aggttgctaa ttgactacca aatagggcgt tggacaccca acggaagaag
     4981 tgaacagggt ggaccttgtt agttggatta cctgcataga taaagacagg ttggtcttga
     5041 taatttccag cgatggcgac aattttattg gctaatttgt catgaccagg ccaccaacct
     5101 gcaatataat aatctttatc agcgatttta acaagtatct taaatccttc aggaatgcct
     5161 tcaatccagt taccggagtt agaatagaaa agtccattca tggcgtagcc acttgttaat
     5221 ggatctttat catcaataat agctcgcatg agaccttcat agtcaccgcc atctgtaaac
     5281 tgttccgcat tgaaacctgc taagattcct aattcctcca gtttttgcat ggcgacacca
     5341 cctacgatga taattggttt cttaccaaat acactggcat caaattgatc agattcgaga
     5401 atgatagcat cagcctcatc tgcgctattg acaatttcaa agcccattcg ttctaccgca
     5461 agtgcagcat ttgcaagaat ggcaaagtcg cctgcccaac tataaaagtg agaaggagca
     5521 taaactttca tcggtttcaa ttcttgtcca ataggtttct tatagagggg ctcgccgtac
     5581 aaagcatagg tatctagtag gtggctaaat tggctagttt ccatgatgta gccatcgtct
     5641 gtaaggtaga ccttagcgcc tgatttgatg gcttgattaa tggcctgaac ggcgctttca
     5701 gaggtgtttg cgacgacata ataaggcgct ttgaaatcaa tttccgtagt acgtggagct
     5761 tttgtccatg tgatgctacc taatttgccg ctaaaggcgt tttcttcaaa tacagccttg
     5821 gcgctaaagc ctttcatatc tgggaagttg accaccaatt cagcatacat ggctccccag
     5881 gcagattcat cagaaccagc gtagaggaca tggttagcga atcctcgttt ggcttgagcc
     5941 atatcgacaa ctaggtcgcc cttgcggaag tttccaacat cttcagttaa ttccttgaca
     6001 acaaccccat tacgattgaa atattcaatc atcttaaatg cttcttgcat atcgttgtgt
     6061 ttatcgagcg tcataggaat cacatagtag tctgggaaga attttggctg gtcttttttg
     6121 acacgtccga caacagctcc gtctggtccg actaattcag cctctgcttt tggatcttct
     6181 accttattga caccgcgtga atagtatttg aggcgcattt ccataagagt gtctggcttg
     6241 gttgccatat tgtgaacacc gcccaaaaca gcaaagaatc ccgccttgaa tgattcttga
     6301 tttccttctg gaatttcaat cgtgtgtcca agaataccgt ggtacattgc atacaccgct
     6361 gtatagcctg agaaggaatc gtcccaacca tctccccagt ggactttagg gatggtgtag
     6421 cgttcatatt tagaatttgc aatacctgct cggcccattt catgagcttt ttccagcata
     6481 atatcggcta gtaaatcata ttcaaagttc gggtcatgtg gcggagtggc aggctcgatg
     6541 agaaatccag atacaaagcc atgaatatct aaaacagata ttgggttcca cttatggatt
     6601 tgacggacaa tggcttgtgt ttctggattc acttggaaac cagtatcacg gttagggtcc
     6661 aaaccattta ctagtgaacg caagttttta acatcgccat caggattttc tgtgaaattg
     6721 aacaagaaga taaatttatc taacaaatct gtcactttta aatgaagagt aacaggattt
     6781 ccatcggcat ctgtagatgg gaaggtgatg gtatcttttt gtgaaaattc tttgaatagg
     6841 ctagttacca catctatgcc gggttgttca tcagcatgag tgttgttgat gagaataggt
     6901 aatttatagt cgaaggttcc agcttgcaac tgtttcagca tctggtctgg ttgggtcagc
     6961 atgagtggtg ttgtttcagt aagatattta tcaatacttg cttgatcttt agccacaaca
     7021 gccattttaa tgtctctacc ttcagctgat tgaccaattg actcaatcct tactaggcgg
     7081 tcggtcgcag cattattttt cgtttcctca atctctgtca acatttcctc atgtgtacgg
     7141 taggcttcat aaggacggaa atgaagagtt tttgaaatta tcaggtttcc atcggcacta
     7201 gtaccttcca acagcatatc ttttataaaa tgtcgatagg tacggcgaat attactcggt
     7261 gtccgtttgc tcaaatcttc tccaaagaga gctgcgagct ggatattcaa atgaagttgg
     7321 ttatcctgtc tgctttcttc tactgtgata aatgtatcac ctgtgaaatc tccctctttc
     7381 aaattccagg ttttccattc ggaaataggc tttccatcta atgtccattc tattttttca
     7441 gtcgtatctg gaagtgtgac ggattctgtg atagtgactg cttccgatag atagacagtt
     7501 tttgtttcga gtgtaattgt atcaatagtc ggtacggcag ttttttcttc tgtagtattc
     7561 tgattatcat tattagctgt tctgagcgtt gtttcctcgg catttggctc ggaagatgtt
     7621 gtatcttctt ctgtggaaac aggtgtagga gaagtatctg ctatttcttc agtttgtttt
     7681 tctgtctcct tcccttctac aagattatct gtagcttcgc ttgtgctagt ttccatgata
     7741 ggagtctctt caggcagtgg agtcactgtt tcactagtag taggtggtat ctcctctgta
     7801 tttgcgaaga ccgttccctg agcgagagat gcagctaaaa gaactgttga ggcaagtagg
     7861 acttgattca acagtctttt cttatatgaa agtttcatac gaacttcctc cttttgataa
     7921 tgtgtatggg gtaataaatt aaaacgggtt atttcatgcc tatcttatca aaaaatatat
     7981 gtttttacaa tataaaatga atatgtttat atatttaaaa tattcagaaa tatcgaatca
     8041 tagagactat ttattttgag taggataatg aactaaaatc tgttataatg gtaaaaaaat
     8101 aagggagaga tatatggaaa aactttggaa aattatatac agtcggacat ttattgtcat
     8161 tagtttgatt attctaacca ttttccttat tctttggttg gtaggttcgg cagctaccta
     8221 tatgcctgct ttattgattg ttttgcaaat tttttcgatt tttgtagcta tttcaatcat
     8281 caatagaccg atgaatacca gttttaagtt aatctggatt atttttgtca ttggtattcc
     8341 gatttttggt gctctattct attttatttt gcagtccaac attgaaacta aacgttatcg
     8401 taaaaatttt cataagcaag cacaaagact tcgggagtat agtaagacgt ctgaaaaggt
     8461 catgaaggca ttggagcagg aagataagga gcaactgaaa ttagctcact tcatgagtga
     8521 gtacgttggc tacccaattc ataccaatac ggctgccgtc tatttttcaa caggtcagga
     8581 aaaatttgaa gctctactag aagaattgaa aaaagcagag cagtatattt tcatggagta
     8641 ctttattgtc gatatgggat atatgtggga ttctatcctt gacattttga aggaaaaggc
     8701 agcgcaaggg gtggaagttc gttttatgta tgatgggatg aattcactga ccaatcttcc
     8761 ctataattac tataaaacct tgagaaaata tgggataaaa gccaaagtat tttctcaaat
     8821 tatcccagcc ttatctacgg tgcaaaataa ccgtgaccat aggaaaattg cgattattga
     8881 tggaaaggtt gcctttaccg gtggtattaa tatcgcagat gaatacatca acaagaaagt
     8941 gcgttttggt tactggaaag acgcagcgat tatgattagg ggagaagctg ttgcaaactt
     9001 tacgttgatg ttccttcaaa tgtggaatta caatgaaaag acagagacag atgacctaaa
     9061 atacctcaaa acgcataaag atttagagac ggaaaccgtt gatgccgaag gtttcttcct
     9121 tccgtatggc gagaatccat ttgatggaga tgaggtagcc aaacgagtct gcctagacat
     9181 gattcagtcg gcaacggatt atatttatat catgacaccc tacctagtgt tggatgatga
     9241 aatgattgat aatttgactt atgcagcgaa gcgtggagtc gaggttcgca ttctgctacc
     9301 gcatatctat gataaaaaat cagcctattt ggctgctcgt actgattttc cgacatactt
     9361 ggaagcaggg attgaaatct ttgaattcca gcctggattt gtccattcca aagttgtttt
     9421 ggtcgatgat aagaaagcta ctgttggtac ggtgaatatg gattttcgct ctttttatct
     9481 taattttgaa tgcggtctct atatttacaa tcactcggca gttttggcag ctattaagga
     9541 tgactttact cattccttca aaaaatcaca gcaaattaac cttctaacct tccataaaac
     9601 gtactcttgg tataagcgtt tgggaggagc cctactacga attatttcgc cgttattata
     9661 aattgcaata ttcgttcttc atggagcaag ggatcgacat tctgtttcgg tcttaccttg
     9721 ctccattttt cttggaaaat gatataatag aaagatagtt tatactcgga aaagttacag
     9781 gttacttgtg attttgagta ttaaaggagt taataacgtg atcaaaccca attttgaatg
     9841 gcaattattg accggttttt ctgatgaaca atttatcaaa attgctaaaa aagaaggagt
     9901 ggacccggta gcggctaagt tgctgtatga acgtggcatc cattcggcgg aagaattgca
     9961 tactttctta caaccaagct tagaagacct tcacgatccc tatttactac atgatataga
    10021 caaggcggta gagcggattc gccgagcaat cgaagattac gaacaaattt tgatttatgg
    10081 agattatgac gcagacggca tgacctcggc atctattctg aaagaaactc tggaggaaat
    10141 gggggcagaa gtccaagttt atcttcctaa ccgtttcaca gatggctatg ggccgaatca
    10201 gtcagtttac aagtatttta tcgagcaaca ggggatttct cttattgtga cggtggacaa
    10261 tggcgtagcg ggtcatgaag cgattgccta tgcccaggaa atgggtgtcg atgttgtcgt
    10321 gacagaccac cattccatgc aggaaaccct tcccaatgcc tatgcgattg tacatccaga
    10381 gcatccagaa ggaaattatc ctttcaaaca tttggcgggc tgcggtgtag ccttcaaatt
    10441 ggcctgtgct cttcttgaaa ctgttcatgc agacttgctg gatttggtcg caattggcac
    10501 catcgctgat atggttagct taaccgatga gaatcgtgtc atggtcaaat atggtctctc
    10561 gcttctcaaa cagactgagc gagcaggttt gcaagagttg ataaagatag ctggtattga
    10621 catagacagt attgatgaag aaacagttgg tttccaactt gctccgaggt tgaatgccct
    10681 tggtcgactc gacgatccta atccagccat cgaattactg accggttttg atgacgaaga
    10741 ggcccatcaa attgccctca tgattgacag taaaaatgta gaacgcaaag acgtcgtcca
    10801 agcaatttac gatgaagcaa aaaccatgct ccgtcaggat agacctgttc aagttctggc
    10861 taaagaaggt tggaacccag gtgttttagg gattgtagca ggacgcctac tagaagaatt
    10921 gcagcaacct gttatcgtct tgtctattga ggatggtaag gcaaaggggt cggctcgttc
    10981 ggttgaagcg gttgacattt tcaaggccct taaagatcat caggacctat ttatcgcttt
    11041 tggtggtcat gctggtgcag caggtatgac cttggaagtt gataaacttg aagagcttgc
    11101 tctaaccttg acagactaca ttatcgaaaa taaattggat ttatccagca agtcttcgct
    11161 ggtcttagat gaagaattgg atttagagga attaacccta gatactctaa aatctttcga
    11221 gaagcttgcg ccttatggca tggataataa aaagcctgta ttctacatca gagactttca
    11281 ggtggaatca gcaaggacca tggggcagaa taatgcccat ttgaaactac gcattactaa
    11341 aggtgctgct ggatttgatg tccttgcttt tggtaagggc aatctagcct tggaattttc
    11401 acaggccaag ggcttagaac tagctgtcac cttatctgtc aatcaatgga atggcaatac
    11461 cagtcttcag ctcatgttgg ttgatgctcg ggtcaatggt gttcaacttt ataatattcg
    11521 tggaaaacaa catcctattc ctgcaggagt cccaattttg gacattgaaa atccagtagc
    11581 agataacaaa gcaattgtct tggctaactt gcctgaggac ctcagtagtc tgcgtagcta
    11641 ttttcaggaa agagaatttg aagccattta ttttaaaaac gaaattgcca aaccgtacta
    11701 tctagatggt tatggtagcc gagaacaatt cgctaaattg tataaaacca tttaccaatt
    11761 tgatgagttt gatgttcgct acaaactgaa agatttggct gtttacttaa aaattaagga
    11821 cagtctattg gttaaaatga ttcagatttt ccaagaatta gaatttgtca cgattacgga
    11881 tggggtcatg cgggtcaaca aagatgcaca gaagcgagag atttcagaaa gtcaaatata
    11941 tcaagaattg aaagaaacag ttatccaaca agagttgatg gcgcttggca ccgttcagga
    12001 aatttatgaa tggctatgtg gtcgcgtttg atgacagtag aagctctggt tgttgttgga
    12061 gtgattggaa cgcttctcta cacttattgg tttatcaggc aaaaaggttt gttgaaaaat
    12121 cttgaacaga taaccgaaat aaagcacgca ctgattgaat tacggcgagt aggatggtca
    12181 gaaagagcta tcaaaaaggt tttcctgaaa caactgttgc ctctaaaaca agaagacatc
    12241 ccagcatttg ttcaaaattt cataaaagaa gctactattt ttgcctcaac tagcttttat
    12301 cagttgataa gagttgacag tcgctcttta agccaagaga aagcgacggc tttattggag
    12361 caatgtatga atatgttaga ttttcctgag gaattaagtc atgggatatt acctgaactt
    12421 ttgcagaaga tggatgtgaa ttgtcctcca caccatccgt tttgggggga ctttgctaag
    12481 ctagttgata aggcttttcc agttcgggaa ttagaagtca aacggccgtt aaacagacag
    12541 gtccatcagc tgcgctacct tatttcctat cagcaggctt tttgggtgcg tcagcagttt
    12601 ggaaaaggaa atacagattg gcaggctctg atagcctatt tacgtagcct acctcgatgg
    12661 tcttaccgct tacgagaatc tgcccgcctg cacaataaac aactgttcgg caagaaaaat
    12721 cagaagactt tgccagtcaa tatgaagatt ttgattcatt ttcacagcga atttatccta
    12781 aatcaagatg gacaatttgc cttgatttta gaagaacgac ctcatgtcaa tggcgtggta
    12841 aacggggctt cctttaatta tgccagagct aataataagc gtcatagaca acttgatatg
    12901 gctccagttg gtaggcagga tcccgttttt cggaaagaat tgctacgctc aaagatggga
    12961 gtctacttat cgcctactcg ctttcgtcgc taccaaaaag gaagaaatga ggttggctgg
    13021 gagcagtctt actttaatca gcaaggaagc ttttcctatg gtggacatag tagggcagct
    13081 tgtgtggcga atttgaggag acgatttgct aaagatatag gtctgaaatg taccaaaaaa
    13141 caatttcatg gtataatgaa gagtaaaaat tatttttaaa aagagagaga caaatgaact
    13201 taaaagatta catcgcaaca attcctaact atccaaaaga aggtatcgaa ttccgtgaca
    13261 ttagcccttt gatggcagat ggaaatgctt atagctatgc agtacgtgaa atcgttcagt
    13321 atgcgacaga taagcaaatc gatatgattg ttgggccaga ggcgcgtggt ttcatcgttg
    13381 gatgtccagt tgcctttgaa ttgggaatcg gttttgcacc agttcgtaag ccaggtaagt
    13441 taccgcgtga ggttatctca gctgactatg aaaaagaata tggtgtagat acattgacga
    13501 tgcatgcaga cgcaatcaaa ccaggacaac gtgtcttgat tgtcgatgac ttgttggcga
    13561 ctggtggtac tgtaaaagca acgatcgaaa tgattgaaaa gcttggcggt atcgttgctg
    13621 gctgtgcctt cttgattgag ctagatgatt tgaaaggccg cgaagcaatc ggtgattacg
    13681 actacaaggt tttgatgcac tattaatcta aggttatagc caaaacttat aactggtcct
    13741 atttttattc taattgaatt gcatagcaac ctgtcttata ataaatataa gaaaattggg
    13801 aggttgctta tgccaattaa aattgaaaaa tcattaccag cagttgaaat tttgagaaaa
    13861 gagaatattt ttgtgatgga tagtgaccga gctagtcatc aggacattcg tcctatcaaa
    13921 atccttattc tcaatctcat gccacagaag atagtgacgg agactcagtt gctccgtctt
    13981 ttggctaaca ctcctttaca gctagaggtt gaatttctct acatggctag tcacgagtcc
    14041 aaaaatacac actcggacca tttgaagcag ttttataaga cttttgagca ggtcagggat
    14101 agctattttg atgggctcat cgtgacagga gcaccagttg aaaatttacc ttttgaggaa
    14161 gttgattact ggcaagaact tactcaagtt tttgattggt caaaaacaca tgtttattca
    14221 acattgcaca tttgttgggg tgcacaggca ggtttgtatg cacgctatgg tgtacccaaa
    14281 cacagtatgt ctcgaaaact atcaggcgta tattgtcaag aagtgactaa tccaactagc
    14341 cctcttatgc gtggatttga cgatgaattt cgttcaccac actcccgtta tacggaagta
    14401 agggaggtag atattgccca tctgagtggg ttgacgattt tatcacaagg tccagaagtt
    14461 ggtctatcca tcttagccag caaggattta agagaaattt atagttttgg acatttagag
    14521 tatgataggg atacactagc taaggaatac caacgtgatt gtatagctgg aaaaaatccc
    14581 catttaccgg aaaattattt caaagaagat gaccctacaa gcaaaccatc tctctcttgg
    14641 aatttaccag cagcacaatt ctttaccaac tgggtgaatt atgctgtcta tcaagaaact
    14701 ccatacgact ggcatatctt tgaacaatca gcccagtcag ctagtcttta aagaggaagt
    14761 atgaactatt cacagcaatt tcgtcaggga catttggtcc tgccagcagc aatattattc
    14821 cactatcaag agctttttcc gtcggcagat gattttttga tttggcagtt tttcttatat
    14881 caaaattctt cagctatcga atcattagcg cctagtgaga ttgctcaagc tactggtaaa
    14941 acagttgctc aggtcaatca agctattgaa aatctccaag atgctggact cttagaattt
    15001 aagacaatca gtattgctgg tgaaattgaa atgatattcg atgcacttcc tgcttttgaa
    15061 aaattggatg ttctgttaac tccaaaacag gcagttgaga ttgtgcaacc agagaatgat
    15121 ttgaagaccc tggtgggtga ttttgaacgt gaattgggcc gctttttatc gccgtttgaa
    15181 attgaagatt tgcagaagac tattgaggat gacaaaactt cgattgattt ggttcgtgca
    15241 gccttgaaag aagctgtttt taacaacaaa acaaattgga aatacatcca agctattcta
    15301 cgaaactggc gccgtgaggg aattactaca gttgcgcaag tagaagcgaa aaatgcagaa
    15361 agagaaatcc agactcctaa gaatgtgact gtttcaagtg actttcttga tgcaatggat
    15421 ctctggaaag attgatatgg aaacaaaatt atctaaaagg ctggaaacag tcgcaagttt
    15481 tgtcccacaa ggggcacgtc tagttgatgt agggagtgac catgcttatc tccctctttt
    15541 tttggtagag caggggcgta ttgattttgc cattgcgggg gaagtcgttc aaggtcccta
    15601 tcagtcagcg cttcagaatg tagagcaggc gggacaaaca gaaaaaattt tagtccgttt
    15661 ggcaaatggc ttaggtgcat ttgagacgtc tgaccagatg actgccgtga ccatagcagg
    15721 tatgggggga cgcttgattg cggaaatctt agaagcaggt aaagaaaagc ttgcgactat
    15781 tgaacgtttg atactccagc caaataatcg tgaagatgat gtgcggcgat ggttggaaaa
    15841 aaatggtttt agattggttt ctgaaaagat tctggaagaa aatggcaagt tatatgaagt
    15901 cctcgttgca gaatcaggac agatgagatt atcagaagtt gaacatcgtt ttggtcccta
    15961 tctactagag gaggcctcac cagttttcgt caaaaaatgg agaagagaac ttgaaaaatt
    16021 aagttctgct ttggaacaag ttccatctga acgccaaggt gaccgctttg ccatttccca
    16081 aaagatccaa caaattcagg aggtagtcca tgttagctag tcaggttatt gaacgctatc
    16141 aagccttttg tcccccttct ttggctatgg aaggcgatgt caaagggctg caaatcggta
    16201 cccttaataa agagattcaa cgtgtcatgg tggctctgga tattcgtgag acaacagtgg
    16261 cagaggcgat tgataaaaag gtagatttga ttatagtcaa gcacgctccg atttttcgtc
    16321 caataaatga tttggtggct gacaatccgc aaactaaaat gtatcttgat ttgattaagc
    16381 atgatattgc agtctatgtt agtcatacag atattgatgt ggttgagggt ggtctcaacg
    16441 actggttctg tgaactatta gaaattcaag atactaccta cttgattgaa actgccgagg
    16501 ggcaggggct tggccgtgtg gggacaatag cagagcagac tttggaagaa ttggctttga
    16561 aagtcaagtc tgtctttgat ctagatgctg tccgtctagt gacctatgtg caccaagcca
    16621 agcagtatgt cagccgtgta gccatctgtg gaggcagtgg tgggtcttac taccatgagg
    16681 ctcttgctaa gggggcagat gtttacatca cgggcgatat ttactaccat actgggcagg
    16741 acatgctgac tcagggcttg ctggctattg atccaggcca tcatatcgaa gcattattta
    16801 tcaagaaaat tgctgaattg ttggaaatat ggaaggcaaa agaaggttgg gatgtcgaaa
    16861 ttctaccttc aactgtttca accaatccgt ttagacattt gtgataaatt aatcagcact
    16921 tgattgtgga aagaccaaga cgacatt
//
LOCUS       DASFRC010000036        16651 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.036, whole genome shotgun sequence.
ACCESSION   DASFRC010000036 DASFRC010000000
VERSION     DASFRC010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 16651)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16651)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16651
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.036"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(16..1455)
                     /locus_tag="U1087_000817"
     CDS             complement(16..1455)
                     /locus_tag="U1087_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000434831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
                     /protein_id="HEM4755315.1"
                     /translation="MKYKKPLSHYQFSPESQYLDRKSARKKPSELLKHLIAFANADGG
                     QLVIGIEDEKQENIITGFKDGRAYPIDDFKKIDREMRETPLDLSFEEIPVINHKGEED
                     FILVISVELSSNRVIAAPNDDVYLRQGDDSVKLSYEQRTQLSYDKGQRFFEDEVVPDA
                     RLKDIDDSLVQDFKNRFDISERSVEEILKARRFLINGKLTKAAILLFGKYPSAFFPQA
                     RVRFQRFDGTDMGTGSSFNVIKEVTFDDALPILIIKVRDFIRTQLREFQYLDDNGQFQ
                     ILPEYPEFAWFEGVVNAVTHRDYSVYGDHIRVLMFDDRLEIHSPGKLPNIVTVDNIKH
                     ERFSRNPRIARTLTEFGWVREMNEGVKRIYSEMESAFLHEPKFSEPGNKVVLTLENNI
                     VSRHLRTRDSLEKQFSDFGELTADEQLIVHYMYNSGERMTTAKAVELTGRSRRHIGKV
                     LQKLTDQGLLKWYGNSKNDKNQYYTLASK"
     gene            complement(1492..2700)
                     /locus_tag="U1087_000818"
     CDS             complement(1492..2700)
                     /locus_tag="U1087_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002266884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755316.1"
                     /translation="MTISKFNSVFSRTNNKEIKAPTALRKKLNLEAPKGYSYELMEGT
                     EDMYVLRSRKNRKENSFQVRIKFPLEFEGMKIQNINELVEAMYRTQKIFILDESLQEN
                     PPTIIHLGSSGVTKQMIGSAEKFPALEPLEVESGEERLLLPVERVPYPSLTKIKIVSS
                     RDQLIDLEIILDEESNNIKMTVKLNYKHLITLDDYFKNLGIIRSFFTTGIKIFNKTLV
                     PDNNQIEAFQQNHIFFEALREIQRFFSVTFEFPHKISNDDVYFTKILFESFINNRLVA
                     IKNKNQIAFTFDKEKFYASSHPELEDGVEIGVVNTREIISLELFGAELQFLEYTIYPR
                     MAFKQKMDENREEIKMIFDLPEESEYYVLFSLDSMNDFDMTINSQELFELIDNAVSIQ
                     NIDFSKSASG"
     gene            complement(2700..3584)
                     /locus_tag="U1087_000819"
     CDS             complement(2700..3584)
                     /locus_tag="U1087_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018030744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="abortive phage resistance protein"
                     /protein_id="HEM4755317.1"
                     /translation="MTTIVNYRAKEERDDFEVIQSKITANALFNFMREYSYLEKAILN
                     MAICPRYYPEDISYLNLKYNSKDLTEWYIPMTCFCDIPLHQISYHAEGNSILLNDKGY
                     GKFSIAFHKEFGIRKGIQPIHYLNTSSVQVEELTAALNILINKDSDYSEDSDILMNFI
                     FEYIRMIKPYTGKMKRRDRDNNVIEIKKNFQDEHEWRYIPKLNPRELPLMLIEEEEIR
                     AEEINKIYTDSILQTRDGVLKFDVEDIRYIFVDTVQNRNRLIQFIRGKRKGRRLSSQE
                     KDILISKIMVYDELKEDW"
     gene            complement(3634..4125)
                     /locus_tag="U1087_000820"
     CDS             complement(3634..4125)
                     /locus_tag="U1087_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000456289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755318.1"
                     /translation="MEPYITESVVNAGIELGILAVKGTTAKINSKIQSMKTEREADKL
                     RSAYDDIVNELIIERAEALRIAQIYKEEYEKVTIKDEDIEYLHNTLIRIISLFSSFGN
                     VTEEQTVSFQQMAELLNKDTLKTMQLLGFNYREAIGEPLTEVCANTIKSKLGNFSKAK
                     KKK"
     gene            complement(4232..8632)
                     /locus_tag="U1087_000821"
     CDS             complement(4232..8632)
                     /locus_tag="U1087_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011226246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Eco57I restriction-modification methylase
                     domain-containing protein"
                     /protein_id="HEM4755319.1"
                     /translation="MISNFDFLAIDIDTAELFRTINMAEENYTHGDYEGTLTKVRKVA
                     ENTARLVADREYLDISERATFNDVLREIRDFIPNKTIVDHFYDIKGKGNNSAHVLNPE
                     DATKENALKSLKQVFDILAWVMLTYIEPDIKASAIGHFLEPRAQEMYTTAERKFIYIQ
                     TVNNESGLFNAFEGTQKIGEGSISSDDIETDWSPNSDFLRTVAPKRINQYMKTSGLPY
                     TLGWVELAYKKATKSWFHDYDVHNVLKRSGIKQAEQLEGTEWFKTDLETAKAAIKAVK
                     EGRNYLNITAKESFIEEPVITLRPEQEAAVEQTQKVFKKKDRMLWNAKMRFGKTLTSL
                     QLVKNEAFQKVLIMTHRPVVADSWFDDFKKMKMSADGYDYGSVNQGETLENLKRGEKP
                     FVYFASIQLLRYNGGQTNLKDFADVDWDLIIIDEAHEGTQTELSDTVMKELVKEHTKI
                     LELSGTPFNLLDQFDEEQVYTWDYVMEQQAKKKWELERPSEPNPYETLPKVSMYTFEM
                     KHKERFSDESKSFNFREFFRVAENGKLVYKQEVRQFLDNITHPDSRTNYPFSTKSYRE
                     ELRHTLWLMPGVKEANAFEGSLKEHPIFGKEYKIVNVVRGASSDDGIANDADIEKVRS
                     AIGKDPSQTKTITLTVRKLTTGVNIPEWTAVLFLSNTNSAMNYLQAAFRAQTPFSHEK
                     LGMKTNCYVFDFAPDRALTVMAESAQINSGVGKKNTQAQKQAMARLLNFMPILGASDN
                     GMKTYDVDRMLTQLKKVYAEKAVRSGFEDDSLYNDNLLTLTADDASMFTKLNAIVGKT
                     QSQKTPKKVVINENGLTTEEHEQAEKAKKKPKAKRTAEDLEVIEKQKEAKKQRKNMIS
                     ILRGVSIRIPMMIYGMAVDLSKDITIQDFIKQVDDESWKEFMPKGFTKGMFSEITKYY
                     DAEVFIEAGRIIRQRAKSFDDLDFIERAEQIAELFGTFKNPDKETVLTPWRVVNLQVS
                     KSVGGLNFYDDNFESVTDGATSNLHWVDNELTSSIYQKETKILDINSKTGLYPLHSAI
                     SLYYQRVAENDDNRFEADQVYQEILANNIYAIAKTPMAKTITERTLTGYRKYKTNVTY
                     IESLTDILKTDIEQGKKLVEEAFNKVKFDVVIGNPPYQESATEKEMVSGQQQRVNNVF
                     QLFQKITDKLNPNHSVLIYPGGRWMQQSGRGMNEFGIELINSTNLSHLIYYPNANEIF
                     GEVAISDGISIVHKDYSKTSDTFEYSLVEGGKTLAIQRNYPGKETFVIYPTDESIVQK
                     IKKFVADNNLNFLSSSSTINQKLFQIESNFVELNPDKVEIYNGQEFDKKTQIKLLAND
                     KAGKAGRATWFIAQREVIKVKQDLIDKYKVVVSSANAGGQKRDNQLAILEPYTAFGRS
                     RLALKAFDTRIESTNFYNYVSSKFIRFAFLLTDENLSSLAKLVPDLLDYTENQKMIDF
                     TRDIDEQFIKILDLTNEEVKRIEDRVDNLR"
     gene            complement(8636..9331)
                     /locus_tag="U1087_000822"
     CDS             complement(8636..9331)
                     /locus_tag="U1087_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011681365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylase"
                     /protein_id="HEM4755320.1"
                     /translation="MEESLIKSKQRVQKHGEVFTPAWMVQKMLDTPGVKEACESVYKT
                     FLEPSAGDGNFLQAILERKLEAVVRQYDKRNWKTKSLVALSSIYGIEFLEDNLEVARS
                     RMFLCYLDWYEQAFGTRLNSKNDIYQSAHYLIHKNIVRGNTLTQQHPVTGEPIRFNEW
                     QLVKGHPSLVRKIPFALSELLGKEVEDDRTVVEGQLSFFDIDDEFMIENESVKKADTI
                     KEITIQKVYLLGD"
     gene            complement(9540..9932)
                     /gene="rpsI"
                     /locus_tag="U1087_000823"
     CDS             complement(9540..9932)
                     /gene="rpsI"
                     /locus_tag="U1087_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HEM4755321.1"
                     /translation="MAQAQYTGTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADL
                     RLVINQPFAVTSTQGSYDVFVNVNGGGYGGQSGAIRHGIARALLQVDPDFRDSLKRAG
                     LLTRDARMVERKKPGLKKARKASQFSKR"
     gene            complement(9952..10398)
                     /gene="rplM"
                     /locus_tag="U1087_000824"
     CDS             complement(9952..10398)
                     /gene="rplM"
                     /locus_tag="U1087_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003083327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HEM4755322.1"
                     /translation="MNKTTFMAKPGQVERKWYVVDATDVPLGRLSAVVASVLRGKNKP
                     TFTPHTDTGDFVIVINAEKVKLTGKKATDKIYYTHSNHPGGLKSISAGELRSKNAVRL
                     IEKSVKGMLPHNTLGRAQGMKLKVFVGAEHTHAAQQPEVLDISGLI"
     gene            complement(10625..11518)
                     /locus_tag="U1087_000825"
     CDS             complement(10625..11518)
                     /locus_tag="U1087_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="haloacid dehalogenase-like hydrolase"
                     /protein_id="HEM4755323.1"
                     /translation="MKRLLSCYASDMVGATKEELKQSILSSEGRIIMGETVVTAAPLI
                     AGVTNAEMMAAFGCDLLVLNELDVFHPEIVDFYDCDNPIAEIKRLTGRLVGINLEPVD
                     TSQEVQDQQVFLKPGRQVSPESLRQAQALGVDFIMLTGNPATGVSMAAIRSAIGLAKE
                     YFEGLIFAGKMHGAGLGESVVDSQALLDFVDLGADGVLIPAVGTVPGVREEIVAPIVS
                     QVKARGALVISTIGTSQESADSQTVREFGLSNKRVGSDIHHIGDGGYGRMPDPENILA
                     LSLAVRGKRHTYFKMGQSVRR"
     gene            complement(11589..12449)
                     /locus_tag="U1087_000826"
     CDS             complement(11589..12449)
                     /locus_tag="U1087_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019319849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HEM4755324.1"
                     /translation="MTFKIVTDSTSDLPISWVQENDVTVLGLTINLDGVTYETVGENR
                     LTSADLLEKMATGGLPTTSQINVGQFEEVFEAVAKEGQDVLYLAFSSALSGTYQSGTI
                     ARDMVLDNYPQAHIEIVDTKAASIGEGYLVMQAAQARAAGKTLAETKAIVEDLVPRLR
                     TYLLVDDLNHLVRGGRLSKAAALIGGLVNIKPLLALNAEGKLEAIAKIRGRKKGIKEM
                     LNLTLDNLDHSTVMVAYTGDIETAEAVKETLLEDSRVSDVLLIELGPIIATHTGTGVL
                     AILSINKKER"
     gene            complement(12446..12967)
                     /locus_tag="U1087_000827"
     CDS             complement(12446..12967)
                     /locus_tag="U1087_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HEM4755325.1"
                     /translation="MKEKVLIVDGYNMIAFWQATKQDFKKGDLDAARTTLLRTLSHYA
                     AFEQIEVICVFDAHHVPGLRQQYDEFKVSVIFTEEEETADSYIERLSAQLNSARRKQV
                     SVATSDLNEQWVVFSQGALRVSARELEERTRVIKKDLDKFVDQVELYTPRLNPWSDGN
                     FQALKEMMEEMKE"
     gene            complement(12968..13696)
                     /gene="rlmB"
                     /locus_tag="U1087_000828"
     CDS             complement(12968..13696)
                     /gene="rlmB"
                     /locus_tag="U1087_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HEM4755326.1"
                     /translation="MEHNDIVYGVHAVVESLEANTGNKLYIQDDLRGKNVEKIKALAA
                     EKKVSISWTPKKTLSDMTEGAVHQGFVLRVSEFAYADLSVILEKAEQEDNPLILILDG
                     LTDPHNFGSILRTADATQVAGIIIPKHRAVGVTPVVAKTSTGAVAHVPIARVTNLSQT
                     LDKLKEAGFWVFGTDMNGTPSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMITIPMK
                     GHVQSLNASVAAAVLMYEVFRKKI"
     gene            complement(13752..14969)
                     /locus_tag="U1087_000829"
     CDS             complement(13752..14969)
                     /locus_tag="U1087_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PASTA domain-containing protein"
                     /protein_id="HEM4755327.1"
                     /translation="MDQWMRDFEERQRHDELKQKMDAQTSAMNSQAIALQKQNNILQK
                     EHERQIEKEFKDRVFQLRLHLAQVTDESQRFVIQQMLSEAEEDYENYQREQAEKRLAD
                     AKRRKIGLIISSIVAVLGMAGLYFVYQDSSQVTVPELYGIELSEAKDLLYEEGLKVGT
                     ITEVGGQSVQPGMVSVSSPSSGKKVKRGSAVNLIIAKNVDAKDTTVVEDSSTSEVATS
                     KTAGSSQASSQSQVGSAVQSFTVDIKKQGLVIRQEPSLSGEVVTNIEPGTYTIVETTQ
                     KEGHSWGRLKSGQGWISLTDLHNPVPQVDTKNLTTDQVKAWVMDDLFRRSVMIEKYRK
                     DQVVISVHMAEDGLVYADVTVPSDPNFEPRDWSYRINSRGELEASEYDTDPEQGGVNW
                     YVAQHYYLENSVN"
     gene            15161..15550
                     /locus_tag="U1087_000830"
     CDS             15161..15550
                     /locus_tag="U1087_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1761 domain-containing protein"
                     /protein_id="HEM4755328.1"
                     /translation="MTLVFGIVAGLIAFAIGGLWYGLIFRDAWIKASGIDMAKVEADR
                     QAGKNGQKEMVISLVIEVLTAVVAIFFIKTLDVSPLHAAGGMGVIAVLASLKNYIFEQ
                     RPINLILINESYKLVCYLVVGIIALFA"
     gene            15621..16589
                     /locus_tag="U1087_000831"
     CDS             15621..16589
                     /locus_tag="U1087_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic acid exporter family protein"
                     /protein_id="HEM4755329.1"
                     /translation="MSLSHRTIKLIFATVLAIYLATALGLSYATAAGIIAILSVLDTR
                     KSSFKMARNRLFSTLLALTIAVLTFALFGFGIWTLGIYLALYVPLAYRFNWEAGIAPS
                     TVLVTHLLLEQDISLIFLGNELALFLIGAGLALLFNLYMPSQEKKIQAYHDQVEDLLK
                     QILLRFEAFLLNGDGRNEAELITQLDKTLDEALKVVYLDRHNQLFQQTNYQVHYFEMR
                     AAQNKILRTMAGNINKCLLEGRENVILSSLFERTAQQLSRENSAKELLLDIELFHATF
                     RERPLPQTREEFETRATLFQLLHDMEAFIRLKVDFYEVYKDQEPSV"
BASE COUNT         4603 a         3838 c         2893 g         5317 t
ORIGIN      
        1 agtataaaat gaaatctatt ttgaagcaag agtgtagtat tgatttttgt catttttact
       61 attgccatac catttcaaga gtccttgatc tgtcaatttt tgcaacactt ttcctatatg
      121 acgtctgctt ctaccagtca attcaacagc ttttgccgtt gtcattctct cgcctgagtt
      181 atacatatag tggacaatca attgctcgtc tgctgttaat tcaccaaaat cagagaactg
      241 tttttccaag ctgtctcttg tacggagatg tcggctgaca atgttgttct caagcgtcag
      301 gacaacctta ttcccaggtt ctgagaattt aggttcatgt agaaaagcag attccatctc
      361 cgagtagata cgtttaacac cttcattcat ctcacgtacc caaccgaact ctgtcaaggt
      421 tctggcaatg cgagggtttc gtgaaaatcg ttcatgcttg atattgtcaa cggtgacgat
      481 attgggtaat ttccctgggc tatgaatctc tagtcgatca tcaaacataa gcacacgaat
      541 gtgatcacca tagacagaat aatcacggtg agttacagca ttgacaacac cttcaaacca
      601 ggcaaattca ggatactcag gcaaaatttg gaattgccca ttgtcatcca aatactgaaa
      661 ttcacgaagc tgagtacgaa taaaatctcg taccttgata atcaaaattg ggagagcatc
      721 atcaaaggtt acttccttga taacattaaa actacttcca gttcccatat ctgtaccatc
      781 aaatcgctgg aatcggacac gcgcttgagg gaagaatgct gacggatatt tgccaaagag
      841 taaaattgct gccttggtta atttcccatt gattagaaat cgacgtgctt taaggatttc
      901 ttccacagaa cgctctgata tatcaaaacg atttttaaaa tcctgaacca agctatcgtc
      961 aatatctttc agacgggcat cagggacgac ctcatcttca aagaagcgtt gtcctttatc
     1021 ataactgagt tgagttcgtt gctcataact caacttgaca gagtcatctc cttgacgaag
     1081 atagacatca tcatttggtg ctgcaatcac acgatttgat gacaattcca cagagataac
     1141 taaaatgaaa tcttcttcac ccttatgatt gattacaggg atttcctcaa aagataaatc
     1201 caaaggagtc tcacgcatct cacgatcaat ctttttgaaa tcgtctatgg gataagccct
     1261 gccgtccttg aaaccagtga taatattttc ctgtttctca tcctcaatac caataaccaa
     1321 ttgaccgcca tccgcattgg caaaagcaat caggtgtttg agaagttcag acggtttctt
     1381 tctggctgat tttcgatcta ggtattggct ttctggtgag aattggtagt gggataatgg
     1441 tttcttatac ttcaaattaa aatctccttt ctagtattaa tttgccttct tttacccaga
     1501 ggcactctta gaaaaatcaa tattttgaat agatacagca ttatctatta gttcaaataa
     1561 ctcttgacta tttattgtca tatcaaaatc attcatagaa tctagtgaaa acaagacata
     1621 atattcactt tcctcaggta aatcaaaaat cattttaatt tcttctcgat tttcatccat
     1681 cttttgtttg aaagccatcc tcggatagat agtatattct aaaaattgca gttcagcccc
     1741 aaataactcc aaagatatta tctctctagt attaacgacc cctatttcga ctccatcctc
     1801 taattcagga tgacttgaag cataaaactt ctccttatca aaagtaaaag caatttggtt
     1861 tttatttttg attgctacta atctattatt gataaatgat tcaaacaaaa tttttgtaaa
     1921 atagacatca tcattactaa ttttatgtgg aaactcaaag gtaacagaaa aaaatctttg
     1981 tatttctcta agtgcttcaa aaaaaatgtg attctgctga aacgcttcaa tttgattatt
     2041 atcaggtacc aaagttttat taaatatctt tataccagtt gtaaagaacg acctgataat
     2101 acctaaattt ttaaaataat catccaaggt tattaaatgt ttataattta gtttcactgt
     2161 catcttgatg ttatttgatt cttcatccaa tattatttct aaatcaatca actgatctct
     2221 acttgaaaca atttttattt tcgttaagct tggatacgga actctttcaa caggtaatag
     2281 aagtctttcc tctccactct cgacttctaa cggttccaac gcaggaaatt tctcagcaga
     2341 acctatcatt tgttttgtaa cacctgaact ccctaaatga ataatagttg gaggattctc
     2401 ttggagcgat tcatctagta taaaaatttt ttgagtccta tacatagcct caactaattc
     2461 attgatattc tgtattttca taccttcaaa ttctaacgga aacttaatcc tcacttgaaa
     2521 gctattctct ttacgattct ttctagaacg caaaacatac atatcctccg ttccttccat
     2581 caattcatat gagtatcctt ttggagcctc tagattaagt tttttcctta aagctgttgg
     2641 agcctttatt tctttgttat tcgttctaga aaatactgaa ttaaactttg aaatagtcat
     2701 caccaatcct ccttcaactc atcataaacc attatttttg atattagaat atctttttct
     2761 tgagatgata gtcgccgtcc ttttcgtttt ccacggataa attgaatcaa cctatttcta
     2821 ttttgaacag tatcaacaaa tatatatctg atatcttcta catcgaattt taatacaccg
     2881 tcacgtgttt gcagaatact atctgtatat attttgttaa tttcttcagc acgaatttcc
     2941 tcttcctcaa ttaacattaa tggaagttcc ctaggattta atttaggaat gtatctccac
     3001 tcatgctcat cttgaaaatt cttttttatt tcgataacat tgttatctct atcccggcgt
     3061 ttcatcttac ctgtgtaagg tttaatcatc cgaatatact caaaaataaa attcattagg
     3121 atatcactat cctccgaata gtcactatcc ttatttatca atatattcaa agcagctgta
     3181 agttcttcca cttgaacaga gctagtattt aaataatgaa ttggctgtat cccttttcta
     3241 ataccaaact ctttatgaaa agctattgaa aatttaccat agcccttgtc atttaataat
     3301 attgaatttc cttcagcatg gtaacttatc tgatgtaacg gaatatcaca aaaacatgtc
     3361 ataggaatat accactccgt taaatcttta gagttgtatt tcaaatttag ataactgata
     3421 tcttcaggat aatacctcgg acaaatggcc atattaagta tggctttttc caaataagaa
     3481 tactctctca taaaattaaa tagcgcatta gctgtaatct ttgattgaat aacctcaaaa
     3541 tcatctcgct cctccttagc tcgataattt acaattgttg tcattgctcc tcctaaatat
     3601 taactattgc ccttgatatc cttataatat gctctatttt ttcttcttag ccttagaaaa
     3661 atttcctaat ttagatttta tagtatttgc gcatacttca gtcaatggct cccctattgc
     3721 ttctctatag ttaaaaccta acagttgcat tgtcttcaag gtatctttat tcagtagttc
     3781 tgccatctgt tgaaacgata cagtttgttc ttcagtaaca ttcccaaatg aactaaataa
     3841 agaaataatt cgaataaggg tattatggag atattctata tcctcatcct taatagtgac
     3901 cttttcatat tcttctttat agatttgtgc aatccggaga gcctctgccc tttcaataat
     3961 taactcatta acaatgtcat cgtaagcact tctaagttta tctgcttcac gctcagtttt
     4021 cattgattgg attttactat ttattttagc tgttgttcct ttgacagcta atatacctag
     4081 ttcaattcca gcattgacta ctgattctgt aatataaggt tccatattcc tacctcatct
     4141 ccttcacttt actttcaata aaggcaattt catcctctga aagtctatat tttcgataga
     4201 gttgtgcgtc taactcagct aaaattaatt gctaccgtaa attatctact ctatcttcaa
     4261 ttcttttaac ttcttcattc gtcaaatcca atatttttat gaattgttca tctatatccc
     4321 gagtaaaatc aatcattttt tgattttctg tatagtctaa taagtcaggg actaactttg
     4381 caagtgaaga aagattttca tcagttaata agaatgcaaa acgtatgaat ttcgaagaaa
     4441 catagttata gaaatttgta gattctattc tcgtatcaaa agcctttaaa gcaagacgac
     4501 tcctaccaaa tgcagtatat ggctctaata ttgccaattg gttatccctc ttctgaccac
     4561 cagcattagc gctagataca acaactttat atttatcaat taaatcttgc ttaactttaa
     4621 taacttctcg ttgtgcaata aaccaagttg cacgtccagc cttacctgct ttatcatttg
     4681 caagaagttt aatttgagtt tttttatcaa attcctgacc attgtaaatc tcaactttat
     4741 caggatttag ttcaacaaaa ttactttcaa tttggaaaag cttttgatta atcgttgatg
     4801 aagatgacag aaagtttaaa ttattatcag caacaaactt tttaattttt tgaacaatcg
     4861 attcatcagt aggataaatt acaaacgtct ccttgcctgg ataatttctc tgaatagcca
     4921 aagtttttcc accctcaact agcgaatact caaatgtatc ggatgtttta ctatagtctt
     4981 tatgaacaat tgaaatacca tctgagattg ccacttctcc aaagatttca tttgcatttg
     5041 gataataaat caagtggctc aggttagtac tgtttattag ctctattccg aattcattca
     5101 ttccacgacc agattgttgc atccagcgtc ctccaggata aataagtaca gaatgattag
     5161 gattcaattt atcagtaatt ttttgaaata attgaaaaac attattaacc ctttgctgct
     5221 gaccagaaac catctctttt tctgttgcac tttcctgata cggaggattt cctatcacta
     5281 catcaaattt caccttgtta aatgcctcct cgactagttt cttaccttgt tcaatatctg
     5341 tttttaggat atctgtcaga ctttcaatgt aagtcacatt ggttttgtac ttccgatagc
     5401 ctgtcagtgt acgttcggtg atggtttttg ccattggtgt tttggcaata gcatagatat
     5461 tattcgctaa aatctcctga tagacttggt cagcttcaaa acggttatca tcattttctg
     5521 ccactcgttg ataatacaaa ctaatggcgc tatgaagagg atagagacct gtcttcgagt
     5581 tgatatctaa aattttagtt tctttctgat aaatagatga ggtaagctca ttgtctaccc
     5641 agtgaagatt tgacgtcgca ccatctgtca ccgactcaaa gttatcatca tagaagttca
     5701 aaccgcctac tgacttagat acttgtagat tgaccacgcg ccaaggtgtc agtacagttt
     5761 ccttgtcagg gtttttaaag gttccaaaca gctctgcaat ctgctccgcc cgctcgatga
     5821 agtccagatc atcaaaagat tttgcacgct gacggataat acgacccgct tcgataaaga
     5881 cctcagcatc ataatacttg gtaatctcac taaacattcc ctttgtgaaa ccttttggca
     5941 tgaactcttt ccacgattca tcatccactt gcttgataaa gtcctgaatg gtgatgtctt
     6001 ttgataaatc gaccgccatg ccgtaaatca tcattggaat acggatagaa accccgcgta
     6061 aaatagaaat catatttttc cgctgtttct tcgcttcttt ttgtttttcg ataacctcta
     6121 gatcttctgc tgttcgttta gcttttggtt tctttttagc tttttcagct tgctcatgct
     6181 cttcagttgt caatccattt tcattaatta caactttctt aggcgttttt tgactctgtg
     6241 tcttaccaac gatagcattt agtttggtaa acatgcttgc atcatcagcg gttaaagtca
     6301 gaagattatc attatagaga ctgtcatctt cgaaacctga ccgcactgcc ttttcagcat
     6361 aaactttctt gagctgtgtc agcattctat ccacatcgta ggtcttcatt ccattgtctg
     6421 aagcccctaa gattggcata aagtttagaa gacgagccat agcttgcttt tgtgcttgcg
     6481 tatttttctt ccctacacct gagttaatct gggcactctc cgccatgaca gtcaaggctc
     6541 tatcaggggc aaaatcaaag acataacaat ttgtcttcat tcccaatttc tcatgagaaa
     6601 aaggcgtctg ggcacgaaag gcagcttgta ggtagttcat ggcactattg gtatttgaca
     6661 aaaacaagac tgctgtccac tctgggatat taacacctgt agttagttta cgaaccgtca
     6721 gagtaatggt ttttgtctgc gaagggtctt taccaatagc agaacgaact ttctctatgt
     6781 ccgcatcgtt agcaattcca tcatcgctac ttgctcctcg aacaacatta acaattttat
     6841 attctttccc gaaaataggg tgttctttaa gcgagccctc aaaagcatta gcttccttaa
     6901 cacctggcat aagccaaagc gtatgacgca actcttcacg ataagacttc gttgaaaaag
     6961 ggtagttcgt acgactatct ggatgtgtga tattatctaa gaattggcga acctcttgct
     7021 tataaacaag tttaccattc tcagccacac ggaaaaattc cctaaagtta aacgacttac
     7081 tctcatcaga aaaacgttcc ttatgcttca tttcaaaagt gtacattgat acttttggca
     7141 aagtttcata aggatttggc tcacttggac gttctaattc ccacttcttc ttagcctgtt
     7201 gttccatgac atagtcccaa gtataaactt gctcctcgtc aaattgatcc agaagattga
     7261 agggggttcc tgataattca agtatctttg tatgctcttt gaccaattct ttcataacgg
     7321 tgtcactgag ctcggtttgc gttccctcgt gcgcctcatc aatgataatc aaatcccaat
     7381 ccacatctgc aaaatctttc agattggttt gtccgccatt gtaccgaagc aattggattg
     7441 aagcaaaata cacaaaaggt ttttctcctc gcttcaggtt ttcaagcgtt tctccttgat
     7501 tgactgagcc ataatcatac ccatcagcgc tcatcttcat tttcttgaaa tcatcaaacc
     7561 aagaatccgc cacaacaggg cgatgagtca tgatgagaac tttttgaaaa gcctcattct
     7621 tgactaattg caaggacgtc agagttttgc caaaacgcat tttagcattc cagagcattc
     7681 ggtctttttt cttaaagact ttttgcgtct gctcgaccgc tgcctcttgt tctggacgaa
     7741 gggtgataac tggttcttca ataaatgatt ctttggcagt aatatttaga taatttctac
     7801 cttctttaac agctttaata gcagccttag ctgtctctaa atccgtcttg aaccactctg
     7861 ttccttccag ttgttcagcc tgtttaatcc ctgaacgctt caagacatta tgcacatcat
     7921 aatcatgaaa ccaggacttg gtcgcctttt tgtaagcaag ctctacccaa ccaagcgtgt
     7981 aaggcagacc agatgttttc atgtattgat taatacgttt tggggcaaca gtacgtaaaa
     8041 agtcactatt tggcgaccaa tctgtctcaa tatcatccga agaaatgcta ccctcaccaa
     8101 ttttttgagt cccttcgaag gcattaaata gtccactttc attgttaact gtttgaatat
     8161 agataaactt ccgctcagcc gtagtgtaca tttcttgtgc tctcggttct aaaaaatgac
     8221 caattgcact ggctttaata tccggttcaa tataggtcag catgacccaa gctagtatgt
     8281 caaagacttg ttttagtgat tttaatgcat tttcttttgt cgcatcttct ggattaagga
     8341 catgggcaga attattccct tttcccttga tatcataaaa gtgatcgacg attgttttat
     8401 tgggaataaa gtctcttatc tctcttagta cgtcattaaa ggtggcgcgc tcactaatat
     8461 ctaaatattc tctatcggca accaacctcg ctgtattctc agcaactttt ctcaccttag
     8521 tcagcgtgcc ttcatagtcc ccatgtgtat aattttcttc agccatattt atggttctaa
     8581 aaagctcggc tgtatctata tcaattgcca aaaaatcaaa atttgaaatc atagcctaat
     8641 ctcctagtaa atacactttt tgaatggtta tctcttttat cgtatctgct tttttaacag
     8701 attcattctc aatcataaat tcatcatcta tatcaaaaaa actcagttgt ccttccacga
     8761 ctgtccgatc gtcttctact tccttaccca aaagttctga aagtgcaaaa ggaatttttc
     8821 ttaccaaact tggatgacct ttgaccagtt gccactcatt gaacctgata ggctcccctg
     8881 taactggatg ctgctgagtc aaagtatttc ctctcacaat atttttatga ataagatagt
     8941 gtgctgattg atagatatca tttttactat ttagtctagt tccaaaagct tgctcgtacc
     9001 agtctaaata acaaagaaac atccgtgaac gtgccacttc caaattatct tctaaaaact
     9061 ctatgccata gatggacgag agagcaacta aagactttgt tttccaattt cgtttgtcat
     9121 actgtctgac cacagcctct agctttctct ctaaaattgc ttgcaaaaaa tttccatcgc
     9181 ctgcagatgg ctctaaaaag gtcttatata cactttcaca agcttctttc actccaggag
     9241 tatccagcat tttctgaacc atccaagcag gtgtaaagac ttctccatgt ttttgaacac
     9301 gttgttttga tttaattaag ctctcttcca aaacctactc cttgaaaacg tttatatctc
     9361 cacctattat accattttcc aacgaacact actagatttc attagcgcct tatccaaaga
     9421 aaacctcaaa taaaattggt gtacaatttt tgaaaaaata cttttcaaaa attacacgaa
     9481 aaaagcaccc gtagggaaaa ccctgcgagc gctttgaaac gttgatatat cgcggtatat
     9541 taacgtttac tgaattgtga tgctttacgt gctttcttaa gacctggttt cttacgttca
     9601 accatacgag cgtcacgtgt aagaaggcct gcgcgtttca atgaatcgcg gaagtctggg
     9661 tctacttgaa gcaatgcacg cgcgatacca tgacggatcg cacctgattg accaccgtaa
     9721 ccaccaccgt tcacgttaac aaaaacgtcg tatgaacctt gagttgaagt tactgcgaat
     9781 ggttggttga taaccaaacg aaggtcagcg tgtgggatgt actcttctac atcttttttg
     9841 tttactgtga ttttaccagt acctgggacc aaacgtacgc gtgcaaccgc gtttttacga
     9901 cgaccagtac ctgtgtattg tgcttgtgcc atttagatta cgtcctttcc cttagataag
     9961 acctgaaata tcaagtactt ctggttgttg tgcagcgtga gtgtgctcag cacctacaaa
    10021 cactttcaat ttcatgcctt gtgcacgacc aagtgtgttg tgtggaagca tacccttaac
    10081 tgatttttca atcaaacgaa cagcgttttt agaacgcaat tcaccagctg agattgattt
    10141 caatccgcct gggtggtttg agtgagtgta gtaaatctta tcagttgctt ttttaccagt
    10201 caatttcact ttctcagcgt tgataacgat aacgaagtcg ccagtatcag tgtgaggtgt
    10261 gaaagttggt ttgttttttc cgcgaagtac gctagcaact actgcagaaa gacgtccaag
    10321 aggcacatca gtagcgtcta ctacatacca tttacgttca acttggcctg gtttagccat
    10381 aaatgttgtt ttgttcatga tttctcctat acgaatcgtt tttgtttact gggcggatgt
    10441 tccggtccgc gggtatttgg aaggttccgg ggcctttcaa atggggtaaa caataccgta
    10501 taccattcta tcaaaactac tgttctccgt caagctattt tactttactt tttttatttt
    10561 ttctccaggc taaagcaagg atagaaaaag cgaacagtta cagcagaaaa atgacaccaa
    10621 atccctatct tcttaccgat tgccccattt tgaaataggt atgccgcttg cctctaaccg
    10681 ccaaggacag agccaagata ttttcagggt caggcatacg accgtagccc ccgtctccga
    10741 tatggtggat gtccgagccc acccgcttgt tgctgagccc aaactcccgc accgtctgac
    10801 tgtccgcact ctcctgacta gtcccgatag tcgaaataac caaagcccca cgcgccttga
    10861 cctgactgac gatcggtgcc acgatttcct cccgcacacc cggcaccgtg ccgaccgcag
    10921 gaatgaggac accgtctgcc cccaagtcca caaaatctag cagggcttga ctatccacga
    10981 ccgactctcc cagacctgca ccgtgcattt tccccgcaaa gatgaggccc tcaaagtatt
    11041 ctttggcaag gccaatagca gagcggattg cagccatgga cacacccgta gcaggattgc
    11101 ctgtcagcat gataaaatct acgccaaggg cttgggcctg tcgcagactt tctggactga
    11161 cttgacgacc cggttttaaa aagacctgct ggtcttgaac ttcctgacta gtatccacag
    11221 gctccaagtt tatcccaacc aatcgacctg tcaaccgctt gatttcagcg ataggattgt
    11281 cgcagtcgta aaagtcaaca atctccggat gaaacacatc taattcattg agcaccaaga
    11341 ggtcacaacc aaaggcagcc atcatctccg cattggtcac ccccgcaatc aagggagccg
    11401 ctgtgaccac tgtttctccc atgataatcc gaccttcact ggacaaaatg gactgcttga
    11461 gctcctcctt ggtcgctcct accatatcac tggcatagca tgacaataaa cgtttcataa
    11521 gaacctccaa atggatatgc tttgttattt gtaaccgttt tcttttttgt gtggataaag
    11581 aaaagagatt atctctcttt cttattgatg gataggatag ctagtacccc tgttcctgta
    11641 tgagtggcaa tgatcggacc caactcaatc aaaagaacat cgctgacacg gctatcttcc
    11701 aacaatgtct ccttgacagc ttcagccgtc tcaatatcac ccgtataagc aaccatgact
    11761 gtagaatgat ccaagttatc caaggtcagg ttcagcattt ccttgattcc ttttttacga
    11821 ccacggattt tggcaatggc ttctaacttc ccttccgcat tgagtgcaag gagaggtttg
    11881 atattgacca atccaccgat gagggctgcc gctttagaca ggcgtccacc tcgcaccagg
    11941 tggttaaggt catcgaccaa gagataggtc cgtaagcgcg gcaccaaatc ttctacgatt
    12001 gccttagttt ctgccaaagt tttacccgca gcacgtgctt gagctgcctg cataaccaag
    12061 tagccttccc cgatagaagc cgcctttgta tcgacaatct cgatatgggc ttgtgggtag
    12121 ttgtccaaga ccatgtcacg tgcaatagta ccactctgat aagtcccgga aagagctgat
    12181 gagaaagcca agtaaagcac atcttgacct tccttggcaa ctgcttcaaa gacttcctca
    12241 aactgaccaa cattgatctg actggttgtc ggcaggccac ctgtcgccat tttctccaac
    12301 aaatcagcag aagtcaagcg gttttctcca acggtttcat aggtcacacc gtctaagtta
    12361 atggtcaaac caagtacggt cacatcgttt tcttggaccc agctgattgg caaatccgat
    12421 gtcgaatcgg ttacgatttt aaatgtcact ctttcatttc ctccatcatt tcttttaagg
    12481 cttgaaaatt cccatctgac cagggattga ggcgcggggt gtaaagctct acctggtcca
    12541 caaacttgtc caaatccttt ttgatgaccc tggttctctc ctctaactca cgcgccgaaa
    12601 cccgtaaggc cccttgtgaa aagaccaccc attgttcgtt gaggtcgctg gttgcgacgg
    12661 aaacctgctt gcgacgggca ctattgagct gggcactgag tcgttcgata tagctatctg
    12721 ccgtctcttc ctcctctgta aaaatgaccg ataccttgaa ttcgtcatac tgctggcgaa
    12781 gacctggcac atggtgggca tcaaagacac aaatcacctc aatctgttca aaggctgcgt
    12841 agtgagacag ggttcgaagc aaggtcgttc tggccgcatc caagtctccc tttttaaaat
    12901 cttgcttagt ggcctgccaa aaggcaatca tgttgtagcc atctacaatg agaacttttt
    12961 ctttcattta gattttcttc cgaaatactt catacatcag cacagctgca gctacgctgg
    13021 cgttgagaga ttggacatgg cccttcatag gaatggtaat catctcatcc acctgctttt
    13081 tgatattgct ggaaatcccc ttgccttcat tgccaataat aagagctagt ttgccagccg
    13141 tattccactt gtggcttgga gttccgttca tatcggtacc aaatacccag aaaccagcct
    13201 ccttgagttt gtcgagggtt tggctgagat tggtcactcg ggcgattggg acatgggcca
    13261 ccgcacctgt ggaggtctta gccacaactg gggtcacccc aactgctcgg tgcttgggaa
    13321 tgatgatgcc agctacctga gtggcatctg cggtccgcaa aatcgagccg aagttgtggg
    13381 ggtctgtcag accgtccaag atgagaatga ggggattatc ttcctgctct gccttttcca
    13441 aaatcaccga caggtccgca taggcgaact cagagacccg caggacaaag ccttggtgaa
    13501 ccgcaccttc tgtcatgtca gacagggtct tcttgggcgt ccaagaaatc gacaccttct
    13561 tctctgccgc cagggccttg attttttcta cattttttcc gcgcaaatca tcctggatgt
    13621 agagcttgtt gccggtgttg gcctccaaac tctctaccac agcatgcacg ccatatacga
    13681 tatcattatg ttccatggtt ttattatagc atatttttga aaaggaaaaa gccgagaatt
    13741 tctcagcttt cttagttcac actgttttcc agataataat gttgagcaac ataccagttg
    13801 acaccccctt gttccgggtc tgtatcatac tcactagctt ccaactcccc acgactattg
    13861 atccgataac tccaatctcg tggttcaaaa ttagggtctg atggtacagt tacatctgca
    13921 taaactaaac catcctcagc catatgaaca cttatgacaa cctggtcttt tcgatacttt
    13981 tcaatcatga cgctacgcct aaataaatca tccatgaccc aagcttttac ctgatctgtc
    14041 gttaagtttt tggtatcaac ctgcggtaca ggattatgca aatctgtcaa cgaaatccaa
    14101 ccctgtcctg actttaatct gccccaacta tgtccttcct tttgagtcgt ctcaactatc
    14161 gtgtacgttc caggttctat attggtcaca acttctccag ataaactagg ttcctgacga
    14221 ataaccagtc cttgtttttt aatatccaca gtaaacgatt gaacggcgct acctacctga
    14281 gactggctag aagcttgcga acttccagca gtcttactag tggctacctc actagttgaa
    14341 ctatcctcaa ctacggtagt atcctttgca tctacatttt tagcaataat taagttaacc
    14401 gcacttcccc gctttacctt cttcccacta cttggagaag atacactaac catcccaggc
    14461 tgaactgact gtccaccaac ttctgttatt gtaccaactt tcaacccctc ttcatacagt
    14521 aaatccttag cttcagatag ctcaatacca tatagttcag gaactgtaac ttgagaacta
    14581 tcttggtata caaaatataa gccagccatt cctaacacag ccacaatact tgaaatgatt
    14641 agccctatct ttcgtctttt tgcgtctgcc aaacgtttct cagcttgctc tctttgataa
    14701 ttctcataat cttcctcagc ttcgctaagc atttgctgga tgacaaatcg ttgactctca
    14761 tccgtaacct gtgctaagtg caatcgtaat tgaaaaactc tatccttaaa ctctttttca
    14821 atttgacgct catgctcttt ttgcaaaatg ttattttgtt tttgaagtgc tattgcttga
    14881 gagttcatag cagaggtttg agcatccatt ttttgcttca attcatcatg tctctgccgc
    14941 tcttcaaaat ctcgcatcca ttgatccata ataatcatct cctcataaaa tgttggttat
    15001 tatctataaa tgaagtctat tttattttag tatagcataa caccttaatt tgtcaatcat
    15061 cattttcacc ccgtttcaat ctaacttttg acaaatagta aagcctatga tattctaatg
    15121 tctactattt gtccgtacaa acggaccaaa aggagatttt atgacacttg tatttggaat
    15181 tgtggcaggt ctgattgcct ttgctattgg tggattgtgg tatggtttga ttttccgcga
    15241 tgcttggatc aaggcttcag gcattgacat ggctaaggta gaagcagacc gtcaggctgg
    15301 aaaaaatggt cagaaggaaa tggtgatttc ccttgtcatt gaagtactga ctgctgttgt
    15361 ggctattttc ttcatcaaaa cccttgatgt ttcaccactc cacgcagctg gtggcatggg
    15421 cgtgattgcg gtccttgctt cattgaaaaa ctacatcttt gagcaacgcc ctatcaacct
    15481 catcctcatc aacgaaagtt acaagctggt ctgctatttg gtagtcggta ttattgcttt
    15541 gtttgcataa attcaaccct cctaacctta ggagggtttt atggtacaat aaaaagaaga
    15601 ctaagaccaa aggagccacc atgtccctct cccaccgaac gattaaactg atttttgcca
    15661 ccgtgctggc tatttaccta gcgaccgccc tgggcttgtc ttatgcgaca gctgccggca
    15721 tcatcgccat tctcagcgtc ctcgataccc gcaagtccag cttcaaaatg gcccgcaacc
    15781 gcctcttctc taccctcctg gccctgacca tagccgtcct gaccttcgcc ctctttggct
    15841 ttggcatctg gaccctgggc atctacctag cactctacgt ccccctggcc taccgtttca
    15901 actgggaggc tggcatcgcc ccatcgaccg tcctcgtcac ccatctcttg ctggagcagg
    15961 atatttcgct gatttttttg ggaaatgagc tggcgctttt tctgattggg gcaggactgg
    16021 cacttttgtt taacctctat atgccctcac aagaaaagaa aatccaggcc tatcacgacc
    16081 aagtcgaaga cctgctcaag cagattctcc tccgctttga agcctttctg cttaacggcg
    16141 acggacgaaa cgaggcagaa ttgattacgc agctggataa gaccttggat gaggccctga
    16201 aagtcgtcta cctagaccgc cacaaccagc tcttccagca gaccaactac caggtccatt
    16261 actttgaaat gcgggccgca caaaacaaaa tcctgcgaac catggcagga aatatcaaca
    16321 agtgtttact ggaaggcaga gaaaatgtca tcctgtccag cctcttcgaa cgaacagccc
    16381 agcaactaag ccgagaaaat tctgccaagg aactgcttct ggacatcgaa ctcttccatg
    16441 ccaccttccg cgagcgacct ctgccgcaaa ccagagaaga atttgaaact cgggccaccc
    16501 tcttccaact cctacacgac atggaagcct ttattcgcct caaggttgat ttttatgaag
    16561 tttataaaga ccaagaaccg tcagtttaag ccgacggttc ttctactttt ccatgaaatt
    16621 catctgatat agtcttttag tttactttta g
//
LOCUS       DASFRC010000037        16319 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.037, whole genome shotgun sequence.
ACCESSION   DASFRC010000037 DASFRC010000000
VERSION     DASFRC010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 16319)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16319)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16319
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.037"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(25..1008)
                     /locus_tag="U1087_000832"
     CDS             complement(25..1008)
                     /locus_tag="U1087_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-related sulfurtransferase"
                     /protein_id="HEM4755330.1"
                     /translation="MSKDIRVLLYYKYVPIENAKEYAAEHLAFCKSIGLKGRILIADE
                     GINGTVSGDYETTQKYMDYVHANPLFSDLWFKIDEENEQAFKKMFVRYKKEIVHLGLE
                     DNDFDNDIDPLVTTGAYLSPKEFKEALLDEDTVVLDTRNDYEYDLGHFRGAIRPDIRN
                     FRELPQWVRDNKEKFMDKRVVVYCTGGVRCEKFSGWMVREGYKDVGQLHGGIATYGKD
                     PEVRGELWDGKMYVFDERIAVDVNHVNPVVVGKDWFDGTPCERYVNCGNPFCNRRILT
                     SEENEHKYVRGCSPECRAHERNRYISENGLTRQEWAERLEAIGETLTPANA"
     gene            complement(1219..2139)
                     /locus_tag="U1087_000833"
     CDS             complement(1219..2139)
                     /locus_tag="U1087_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755331.1"
                     /translation="MVWTEEKLRPIIHSILNPDEEVLSLYQSKTTKSIYGCILWNSYY
                     YKVFRVSNHPSQSTYKQPTFYDFHGEFYMKGAIRTYLYHTNSWYELSKQSYYLLLFFQ
                     KLWDEKQEVEASWQNGRMQIRLVVEEEGWQVHYRFPDNQAREVERLLASGMLVAIRSS
                     RNFIKIRTSRFVAPYIALIKQRQLYRKKPSKAMLQWEKYQSQLIEIQRTYRLVEENAP
                     KTFFGHWLNKVQLYLCSAIASYWEEVIKGVEWQEAREIKDQRKIEKPHNPIEDKWKEN
                     IARRHKRKVDQLIGHDTLEKLRQLKTELDD"
     gene            complement(2247..2792)
                     /locus_tag="U1087_000834"
     CDS             complement(2247..2792)
                     /locus_tag="U1087_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF-type riboflavin transporter
                     substrate-binding protein"
                     /protein_id="HEM4755332.1"
                     /translation="MKNNSIKTVVATGIGAALFVVIGHLINIPTFVPNTSIQLQYAVQ
                     SLLAVVFGPVVGFLVGFIGHTLKDSLTYGPWWSWILASGVFGLVVGLTKKRLRIQEGI
                     FEGKDILFFNLVQIAANVLAWGVIAPVLDILIYSEAANKVFAQGLVAGIANSITVAIA
                     GTLLLAVYAKSQTKTGSLSKD"
     gene            complement(2813..3661)
                     /locus_tag="U1087_000835"
     CDS             complement(2813..3661)
                     /locus_tag="U1087_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-adenosyl-l-methionine hydroxide
                     adenosyltransferase family protein"
                     /protein_id="HEM4755333.1"
                     /translation="MSNNLLVLQSDFGLVDGAVSAMIGVALQESRDLVVHHLTHDITP
                     YNIFEGSYRLFQTVEYWPEGTTFVSVVDPGVGSKRKSVVALTEQNHYIVTPDNGTLSF
                     IKKYVGIKAVREISEVANRRANTEHSYTFHGRDVYAYTGAKLASGHISFEEVGPELSV
                     DKIVEIPTVPTEVGSDYVKGAIDILNVRFGSLWTSITREEFYTLQPQFEDRFEVTIYN
                     NDMLVYQNQVTYGKSFADVRIGQPLIYINSLYRVGVAINQGSFAKAYNVGVGQNWHIE
                     IKRISN"
     gene            complement(4093..4809)
                     /locus_tag="U1087_000836"
     CDS             complement(4093..4809)
                     /locus_tag="U1087_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015604432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM4755334.1"
                     /translation="MGRKWANIVAKKTAKDGANSKVYAKFGVEIYVAAKKGDPDPETN
                     SALKFVIDRAKQAQVPKHIIDKAIDKAKGNTDETFVEGRYEGFGPNGSMIIVDTLTSN
                     VNRTAANVRSAFGKNGGNMGASGSVSFMFDKKGVVVFAGDDADAIFELLLEADVEVDD
                     VEAEDGTITVYTAPTDLHKAIVALKESGIQEFNVTELEMIPQSEVSLEGDDLATFEKL
                     YDALEDDEDVQKIYTNVDGF"
     gene            4970..5281
                     /locus_tag="U1087_000837"
     CDS             4970..5281
                     /locus_tag="U1087_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000827864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM4755335.1"
                     /translation="MKRNKHLPLTETTYYILLALLEPAHGYHIMQKVEDMSDGDVKIA
                     AGTMYGAIENLLKLKWICSVPSSDKRRKVYQVTATGQEIIKLETQRIQKLHHIAKELG
                     F"
     gene            5292..5918
                     /locus_tag="U1087_000838"
     CDS             5292..5918
                     /locus_tag="U1087_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2812 domain-containing protein"
                     /protein_id="HEM4755336.1"
                     /translation="MIRHKLFTSLQEEEHWINSIQSEGYQLVKVTPWTAAYHFEKCSR
                     TPHPVRLDFHEHIAKGEYSNYLSLFEDCGWQPIQGSRRCGIHYFQQTIEASSTEIFSD
                     TESKKAFYSRYQNYAYSYFGLFLTLFFIHYQVGLQNGYTLWNPKSWYLTPELWERTGT
                     SFWFGFLFETPFALFRSGIIPLFFLAWSIYFLHIAEKGKKEAKKLEKY"
     gene            complement(5990..8158)
                     /locus_tag="U1087_000839"
     CDS             complement(5990..8158)
                     /locus_tag="U1087_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HEM4755337.1"
                     /translation="MKKFLSFEFWQKFGKCLMVVIAVMPAAGLMVSIGNSIPLISPES
                     ELLIRIGNIIAQIGWGIIGNLHLLFALAIGGSWAKEKAGGAFSAGLAFILINLITGHF
                     FGVTTDMLADAAATVTTVFGTEIPVSGYFVNILGQPALNMGVFVGIIAGFVGATTYNK
                     YYNYRKLPDVLTFFNGKRFVPFVVIYRSVLVALGLAIFWPVVQTGINSFGKWIASSQD
                     TAPILAPFVYGTLERLLLPFGLHHMLTIPMNYTSLGGTYDILTGAQAGTQVFGQDPLW
                     LAWITDLINLKDAGDMAQYNDLLANITPARFKVGQMIGSSGILMGLTYAMYRNVDEDK
                     KHKYKGMFISSALAVFLTGVTEPIEFMFMFAAMPLYVVYAFVQGAAFAMADIVNLRMH
                     SFGNIEFLTRTPMAIKAGIGMDVINFIWVTALFAVGMYFIANFMIKKFNLATAGRNGN
                     YDTETTDVVSNSNVDTADASSQVVQIINLLGGRDNIADVDACMTRLRVSVKDVAQVGD
                     ENAWKQAGAMGLIIKDSGVQAVYGPKADVLKSDIQDLLESGVAIPRTEIVATEEVAPE
                     TQFKGMTETVYSVAEGQAIAITEVKDPVFSQKMMGDGYAVEPSSGNVYAPVSGIVTSV
                     FPTKHAVGILSDKGVEVLVHVGLDTVALNGAPFSAKVTDGQRVEAGDLLLVADLDAIR
                     SAGRETTIVVAFTNTAEIKSVSLGNLGQVSQDSQVATVEL"
     gene            complement(8192..8983)
                     /locus_tag="U1087_000840"
     CDS             complement(8192..8983)
                     /locus_tag="U1087_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEM4755338.1"
                     /translation="MKLLTINVHAWLEERQDEKLDVLAQTIAEKAYDVIALQEVNQLI
                     TADLVTKDLKADNYGLILLEKLRTLGQFDYSYYWSNSHIGYDKYEEGIAFLTKLPVYE
                     VDPFYCSQNKSIDSILSRKIMGLTVFYQDQLIDLYSCHINLPGSEEEDQLDNIRTIVE
                     RTGNRRFKILMGDFNTDAFSDREAYEAITELGLYDSYNLAMEKDQGITVEKAIDGWAG
                     HSQEKRLDYIFLNQKKEVLSSLVIFNGENRPIISDHFGVEVEINV"
     gene            9182..9889
                     /locus_tag="U1087_000841"
     CDS             9182..9889
                     /locus_tag="U1087_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018367901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTRA domain-containing protein"
                     /protein_id="HEM4755339.1"
                     /translation="MSKYKKVYQDIKKKIEEQVWSTGQALPTENELMEVYSYSKDTIR
                     KALSLLEMDGYIQKKQGKSSIVIEHGLMKDQYLSEIKTAGELNKRSQHQIQTQLTSLY
                     IIQGQEDLMSTFEVDDKVDFYRVSRVRTIDGERLEYDISYFDRRVVPYLSKEIAESSI
                     YRYLEEELHLTISHSRREISFRFANEEEKQLMDLGDYDMVVVVTSITYLSNGQAFQYG
                     TISYRPDKVSFVSMAKR"
     gene            complement(10118..12382)
                     /gene="glgP"
                     /locus_tag="U1087_000842"
     CDS             complement(10118..12382)
                     /gene="glgP"
                     /locus_tag="U1087_000842"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen/starch/alpha-glucan family
                     phosphorylase"
                     /protein_id="HEM4755340.1"
                     /translation="MTKFTTFAETNTSKKLADLTNEEIYLQLLNYVKEAAATKPKNTG
                     KRKVYYISAEFLIGKLLSNNLINLGVYKDIQAELAAAGKSLAQVEDVEPEPSLGNGGL
                     GRLASCFVDSMSTLAINGEGVGLNYHCGLFRQVFKKNEQEAEPNFWIENDSWLIPTTI
                     SYDVPFKNFTLKSKLDRLDILGYKKETKNYLNLFDIESVNYDLITDGISFDKTDIKEN
                     LTLFLYPDDSDKNGELLRIYQQYFMVSNAAQLLIDEAIERGSNLHDLADYAYVQINDT
                     HPSMVIPELIRLLTEKHGIEFAEAVAIVKNMTGYTNHTILAEALEKWPLEFLEEVVPH
                     LVDIIKELDALIRAEIKDPAVQIIDESGRVHMAHMDIHFSNSVNGVAALHTEILKNSE
                     LKAFYELYPEKFNNKTNGITFRRWLEFANQDLADYIKELIGDEYLTDATKLEKLLAFA
                     DDKEVHAKLAEIKHNNKLALKRYLKDNKGIELDENSIIDTQIKRFHEYKRQQMNALYV
                     IHKYLEIKNGKLPKRKITVIFGGKAAPAYVIAQDIIHLILCLSELINNDPEVNKYLNV
                     HLVENYNVTVAEKLIPATDISEQISLASKEASGTGNMKFMLNGALTLGTMDGANVEIV
                     ELAGMDNIYTFGKDSDTIIDLYDKAGYVSADYYNGDANIKRAVDFIVSDEVKALGNEE
                     RLGRLHHELISKDWFMTLIDLAEYIEVKEQVFADYEDQDSWNKKVVHNIAKAGFFSSD
                     RTIEQYNQDIWHSN"
     gene            complement(12375..13883)
                     /gene="malQ"
                     /locus_tag="U1087_000843"
     CDS             complement(12375..13883)
                     /gene="malQ"
                     /locus_tag="U1087_000843"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019312918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HEM4755341.1"
                     /translation="MTNRTSGILMHITSLPGKFGIGTFGQSAYDFVDFLVETKQTYWQ
                     ILPLTTTSYGDSPYQSFSAIAGNTHLIDFDLLVEDGLLATEDFQDVNFGDNPEKVDYA
                     LIYQVRRPILEKVVQAFLQDDKKKAAFLEFEKANSSWLTDYAEFMAIKEYFGNKALQE
                     WEDKKVVARNEEALDKYRLELANQIDYYKVTQYFFFSQWKQLKEYANKHHIKIIGDMP
                     IYVSADSVEVWTKPQLFKLDSERKPLYVAGVPADNFSADGQLWGNPIYDWPEHEKTGY
                     NWWIYRIHESFKLYDVLRIDHFKGFSDFWQVDGKAEVAKVGTWEPGPGYNLFKAVKET
                     LGDLPIIAEDLGNIDAKARKLLADCGYPGMKILEFGFFDVTGKSIDAPHRCIPNSVAY
                     TGTHDNEVVNGWYNNLDPEQQEYVDAYSNRKPIEKVSQAMLRMLFATVSDTAIATMQD
                     VLDLGEESRMNMPSTIGGNWEWRMKAEDLTQERKDFLTKMTLLYQRGNENHD"
     gene            complement(14065..16164)
                     /locus_tag="U1087_000844"
     CDS             complement(14065..16164)
                     /locus_tag="U1087_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005592032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HEM4755342.1"
                     /translation="MNNNFNNFNNMDDIFNQLMGNIGGYSTEGRRYSINGREVTPEEF
                     AMYRQTGRLPQTEEVAQTQAKGQIKSDGILAKLGRNLTQDAREGKLDPVIGRNKEIQE
                     TSEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
                     GTQYRGAFEENVQNLVDEVKKAGNIILFFDEIHQILGAGSTGGDTGSKGLADILKPAL
                     SRGELTVIGATTQDEYRNTIHKNAALARRFNEVKVNAPSAEDTYQILKGIKPLYEAHH
                     NIELPDEVLRAAVDYSVQYIPQRSLPDKAIDLIDVTAAHLAAQHPVTDIQTLEAEMAE
                     AKQLQLEAAEKEDYEKALNEKVRIDKLQKQIDNHTEQQKVVATVNDVAQAVERMTGIP
                     VSQMGASDIERLKELKNRLAANVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVG
                     PTGVGKTELAKQLALDLFGNKDAIIRLDMSEYSDRTAVSKLIGTTAGYIGYDDNSHTL
                     TERVRRNPYSIVLLDEIEKADSQVITLLLQVLDDGHLTDGQGNQVNFKNTIIIATSNA
                     GFGYGMAEGEENQDIMDRIAPFFRPEFLNRFNAVIEFKHLDKDDLKAIVELLLAQVNN
                     TLAKKGIQLMVTEAAKEFLMEEGYDKAMGARPLRRVIENQIRDKVTDYYLDHVDVKYL
                     EADVVDGSIQIKEQSFD"
BASE COUNT         4717 a         3536 c         3062 g         5004 t
ORIGIN      
        1 tttttcaatg caattttggt attactaagc atttgctgga gtaagagttt ccccaatcgc
       61 ttccaagcgt tctgcccatt cttgacgagt caagccgttt tcagagatgt aacggttgcg
      121 ctcatgagca cggcattcag gtgaacagcc acgaacatac ttgtgctcat tctcttctga
      181 tgtcaaaatg cgacggttac agaatggatt gccacagttg acatagcgct cacatggtgt
      241 gccatcgaac cagtccttac caacgacaac agggttaaca tggttaacat cgaccgcgat
      301 acgctcgtca aagacataca tcttcccatc ccacaattcg ccacgaactt ctgggtcttt
      361 accataggtt gcgataccac cgtggagctg accgacatcc ttgtagcctt cacgaaccat
      421 ccagcctgag aatttttcac agcgaacacc accagtacag taaacaacta cacgcttgtc
      481 catgaatttc tctttgttat cacggaccca ttgtggcaac tcacggaagt tgcggatgtc
      541 tggacggatc gcaccacgga agtgaccaag gtcatactcg tagtcattac gtgtatccaa
      601 aacaactgta tcttcgtcca agagagcttc tttgaactct tttggtgata ggtaggcacc
      661 tgttgtcacg agtggatcaa tatcgttgtc aaagtcgttg tcttccaaac caaggtgaac
      721 aatttctttt ttataacgaa caaacatttt cttgaaagct tgctcatttt cttcatcaat
      781 cttaaaccac aaatcgctga acaatgggtt tgcatgaacg tagtccatgt acttttgagt
      841 tgtttcatag tcaccagaaa cagtaccgtt gattccctca tcagcaatca aaatacgtcc
      901 tttgagtccg atagacttac agaaagctag atgctcagca gcatattctt tggcattttc
      961 aattggaaca tacttgtaat agagtagaac gcgaatatct tttgacatag tgtctccttt
     1021 tcaatctttg caatagatga taaaactctg tcatttctaa taaatgatac cttacgatta
     1081 tatcgtttag cccctcaaaa gacaaaaatc tgaactgaaa atttagaacc tgtattcgcg
     1141 ggttcaatgc ttatatgtaa aaaatacggt aacatggatg gcatgctacc gcatttattg
     1201 aaggttcgct ataacttctt agtcgtctaa ttctgttttc agttgtcgga gtttttccaa
     1261 ggtatcatgt ccaatcagtt ggtccacttt tcgcttatgg cgtctagcaa tattttcctt
     1321 ccatttatct tcaataggat tatgtggctt ctcgattttc ctttgatctt tgatttctct
     1381 tgcctcctgc cattccactc ctttaataac ttcttcccaa tagctggcaa tggcagagca
     1441 gagatagagt tggaccttat tcaaccagtg tccaaaaaaa gttttcggag cattttcctc
     1501 cactagccga taggtccttt ggatttcaat aagttgactt tggtattttt cccactggag
     1561 catagcttta ctcggctttt ttcgataaag ttgacgctgt ttgattagag ctatatacgg
     1621 tgcaacaaaa cggctcgtcc gtatcttgat aaaatttctg gaggagcgaa tggccaccag
     1681 catgcctgag gccaataagc gttcaacctc ccttgcctga ttatctggaa aacggtaatg
     1741 gacttgccac ccctcttctt caaccactaa gcgaatctgc attctaccat tttgccaact
     1801 cgcctccacc tcttgctttt catcccataa cttttgaaaa aagagaagaa ggtagtagct
     1861 ttgtttacta agttcatacc aactgttcgt gtgataaagg taggtccgaa tcgctccttt
     1921 catataaaat tcgccatgga aatcataaaa agttggctgt ttatatgtag attgtgatgg
     1981 gtggttacta actcggaaaa ccttataata ataactattc caaagaatgc agccataaat
     2041 tgatttcgtc gttttcgatt gataaagact taaaacttcc tcgtcaggat tgagtataga
     2101 atgaataatc ggtctcaact tttcttctgt ccagaccata cttctcccct tgaacacatg
     2161 tttttgtttg ttttatatta ttatatcata tatgtatttt ttggtattga aaaaaaccta
     2221 gaattttttc tagggaaaat aaaaacttaa tctttagaca aactacctgt cttcgtttga
     2281 gattttgcat aaacagccaa aaggagtgtc cctgcaatag caactgtaat actgtttgca
     2341 atacctgcca caagtccctg tgcaaaaacc ttattcgccg cctcactgta gataagaata
     2401 tctaaaactg gggcaatgac tccccaagca agcacattcg ccgcaatctg aacaaggtta
     2461 aagaaaagaa tatctttccc ttcaaaaatc ccttcttgaa tacgtagacg ttttttggta
     2521 agaccaacaa ccaaaccaaa gacccctgat gccaaaatcc atgaccacca tggaccgtaa
     2581 gtcaacgaat ccttaagcgt gtgcccaatg aaaccgacca agaagccaac tacaggacca
     2641 aatacaactg ccaatagcga ttgaacagcg tattgaagct ggatagaagt atttgggaca
     2701 aaggttggaa tattgattaa atgaccaata accacaaaga gggctgcgcc gataccagta
     2761 gcaacgactg ttttgattga attatttttc ataactatct cctaaaattt ctttaattac
     2821 taatacgttt gatttcaata tgccagtttt gacctacacc gacattataa gccttggcaa
     2881 atgagccctg attaatcgca acacctacac gatagaggga attgatataa atcaatggct
     2941 gtccgatacg tacatccgca aaggacttcc cgtaggttac ttggttttga tacacaagca
     3001 tgtcgttatt gtatatggtc acttcaaagc gatcttcaaa ctgcggttgc aaggtgtaaa
     3061 attcttccct cgtaatcgag gtccaaagcg agccgaatcg aacattcaga atatcaattg
     3121 caccttttac atagtccgaa ccaacttccg ttgggactgt tggaatttcc acaatcttat
     3181 ccacgcttaa ttctggacca acttcttcaa agctaatgtg tccagaagcc aatttagctc
     3241 ccgtataggc ataaacatct cgaccatgga aggtgtacga atgttctgta ttggcacggc
     3301 gattggccac ctctgaaatt tctcgaaccg cctttatccc cacatatttt ttgatgaagg
     3361 atagcgtccc attatctggc gttacaatgt agtgattttg ttcggtcaaa gctactacac
     3421 tcttacgttt tgaaccaact cccggatcaa caaccgaaac aaatgttgtt ccctccggcc
     3481 agtattcgac cgtttgaaag aggcgatatg aaccctcaaa gatattgtac ggagtaatat
     3541 catgagttag atggtgaaca actaaatctc tcgattcttg gagagcaaca ccaatcatcg
     3601 ctgaaactgc accatcaact aaaccaaaat ctgattgtaa aacaagtaaa ttatttgaca
     3661 tacattctcc taatcttatt accgttctat gataacagaa aacctgtgac cattcaaata
     3721 gatatttcca aagcctggct atagtttttc cttatacctc atctatcaag cactctacta
     3781 tcagccaccg aaaactcgca aatttttcca tcgtaccttc ttcgaactta agctaaaata
     3841 tccccacttc tctagttcca acaactatcg tctttgagta attggatata aagaaaaccg
     3901 cctagcgcag ttccaatttc caaactttta agccaaaaat tgtccttgtg gacagctgaa
     3961 aataaagaaa accagctacc gctggttctc atttccaacc ttcgacgtcc cacgtacaat
     4021 gagaatcatc taccgacgat ttcaatttcc agccttttag tataaaaaaa gtgctaccag
     4081 cactttttta tactaaaacc catccacatt cgtgtagatt ttttggacgt cttcgtcgtc
     4141 ttctagggca tcgtagagtt tttcaaatgt tgcgaggtca tcgccttcaa gtgatacttc
     4201 tgattgtggg atcatttcaa gttcagtgac gttgaactct tggattcctg attctttaag
     4261 tgccacgatt gccttgtgca aatcagttgg ggctgtatag acagtgattg tgccgtcttc
     4321 tgcttctacg tcatccactt cgacatctgc ttcaaggagc aattcgaaga tggcgtctgc
     4381 atcatcacct gcaaagacaa ccacaccttt tttatcaaac atgaatgata cagaaccaga
     4441 tgcccccatg ttaccgccgt ttttaccaaa agcagagcgc acgttagctg ccgtacggtt
     4501 tacgtttgat gtcaaagtat caacgataat catagaacca tttggtccaa agccttcgta
     4561 acgaccttcc acgaaggttt cgtctgtgtt tccttttgcc ttgtcaatgg ccttgtcaat
     4621 gatgtgtttt ggaacctgcg cttgcttagc acggtcgata acaaatttca gcgctgagtt
     4681 tgtttctgga tctgggtcac cctttttcgc tgctacatag atttcaacac caaatttggc
     4741 gtaaactttt gagttagcac cgtcttttgc ggttttcttg gctacaatat tggcccattt
     4801 acgtcccatg gggaacctcc tacattttat aaaatcgctt tattatacca taaatggcaa
     4861 ggattgagaa gatttttaaa atcttcttca ctatacagtt gacatgtata gtttctcgat
     4921 atataatata tagtacaact atacatttga actatatagg agaagccaaa tgaaaaggaa
     4981 caagcatctc cccttaacgg agacaaccta ctatattcta ttagccctct tggaacctgc
     5041 ccatggctac catatcatgc aaaaagtaga ggatatgagt gatggtgatg tgaaaatcgc
     5101 tgcaggaacc atgtatggag cgattgagaa tcttttgaaa ctaaaatgga tttgttccgt
     5161 tccaagttcc gataaaagaa gaaaagtcta tcaagtaaca gcaacgggcc aagagattat
     5221 taaactggaa acacagcgta ttcaaaaact acatcatatt gccaaagaat taggttttta
     5281 aggaggaagc catgataaga cacaaattat tcaccagttt acaagaggaa gaacattgga
     5341 ttaattcgat tcaatccgaa ggttatcagc ttgtcaaagt aactccgtgg acagcagcct
     5401 atcattttga aaaatgtagt cgaacccctc atcccgtacg ccttgatttt catgaacata
     5461 ttgcaaaagg agaatattca aattacctct ctctatttga agactgtggt tggcaaccta
     5521 tacaaggtag tcgtagatgt ggcatccatt attttcagca aacaatcgaa gcttcaagca
     5581 ctgaaatttt ttctgatacc gaatcgaaaa aagcattcta ttcacgctac caaaattatg
     5641 cctactccta tttcggatta tttctgactt tattttttat ccattaccaa gttggactcc
     5701 aaaatggata cacactttgg aatcctaaat cctggtacct aactccagaa ctatgggaac
     5761 gaactggtac cagtttttgg tttggttttc tctttgaaac cccattcgca ttgtttagaa
     5821 gtggcattat tcccttattt ttccttgctt ggtctattta tttcctccat atcgctgaaa
     5881 aaggtaaaaa agaagcgaag aaattagaaa aatactgatg gcatactatc caaaagaaaa
     5941 agattgaaaa gagttgactg caatcatctt ttcaatcttt ttttactttt tacaactcaa
     6001 ctgtcgcaac ttgactatct tgactaacct gtccaagatt tccaaggctg acagatttga
     6061 tttcagcagt atttgtgaag gcaacaacga tggttgtttc acgtcctgct gagcgaatgg
     6121 catccagatc tgcgacaagg agcaagtctc ctgcttcaac gcgttggcca tctgttacct
     6181 tagctgagaa tggggcaccg tttagtgcaa ccgtatctag gccgacgtgc accaagactt
     6241 ctacaccctt gtcagacaaa atcccgacag cgtgtttggt tgggaagaca ctggttacga
     6301 tacctgaaac tggtgcgtaa acattgccgg agctaggctc aactgcataa ccgtcgccca
     6361 tcattttttg tgagaagacc ggatctttca cttctgtgat ggcaatggct tgcccttcag
     6421 caacagagta aactgtctcc gtcatacctt tgaactgagt ctcaggagca acttcttctg
     6481 tcgcaacaat ttccgtacga gggatggcta cgcctgattc tagcaagtct tgaatatctg
     6541 atttgagaac atctgctttt ggtccataga ctgcttgaac acctgagtct ttgataatca
     6601 agcccatagc accagcctgt ttccaagcat tttcatctcc aacttgtgcc acatctttaa
     6661 cactaacgcg aagacgagtc atacaagcat ccacatctgc gatattatca cgaccaccaa
     6721 gcaagttgat gatttgaacc acttgtgaac tggcatccgc agtatctacg tttgagtttg
     6781 aaaccacatc cgttgtttct gtatcatagt taccattgcg tccagctgtt gctaggttga
     6841 atttcttaat cataaagttg gcaatgaagt acataccaac cgcaaagagg gctgttaccc
     6901 agataaagtt aataacatcc ataccgatac cagctttgat cgccatcggt gtacgtgtaa
     6961 ggaattcgat attaccaaat gagtgcatac gcaagttgac aatgtcagcc atggcaaaag
     7021 ccgcaccctg tacaaaagca taaacgacat agagtggcat tgctgcaaac atgaacataa
     7081 actcaattgg ttctgttaca cctgtcaaga atacggcaag tgctgaagaa ataaacatac
     7141 ctttgtactt atgtttttta tcttcatcca cattgcggta catagcgtaa gtcaatccca
     7201 tcaaaatccc tgatgaacca atcatttgac caactttgaa acgggctgga gtaatgtttg
     7261 caagaagatc attgtactga gccatatcac cagcgtcttt gaggttgatc aagtctgtaa
     7321 tccaagccaa ccagagcgga tcttgtccaa atacttgtgt acctgcttgt gcacctgtca
     7381 agatgtcata ggtaccacca agtgacgtat agttcattgg aatagtcaac atgtggtgta
     7441 aaccaaatgg aagaagcaaa cgttccaagg taccataaac aaaaggtgca agaattggtg
     7501 ctgtatcctg tgagcttgca atccatttac caaagctgtt gattcctgtt tgaacaactg
     7561 gccaaaagat agctaatcct agcgctacaa gaactgagcg atagataacc acaaatggta
     7621 caaagcgttt accgttaaag aaggtcaaaa catcaggtaa tttgcggtaa ttgtagtatt
     7681 tgttataggt tgttgcccct acaaaaccag cgatgatacc aacgaagaca cccatgttca
     7741 gagcaggctg acccaagatg ttgacgaagt agcctgaaac tggaatctct gttccaaaaa
     7801 cagtggttac ggttgctgct gcatctgcaa gcatgtcagt cgtcactcca aagaagtgac
     7861 ctgtaatcaa gttaatcaag ataaaagcaa gacctgccga gaaggcacct ccagcttttt
     7921 ccttagccca gctaccaccg atagccaatg caaagagcaa gtgaaggttt ccgataatcc
     7981 cccaaccgat ttgggcaatg atattcccga tacgaatcaa gagttctgat tctgggctga
     8041 ttaacggaat agagtttccg atagaaacca tcagacctgc tgcaggcata actgcaatca
     8101 cgaccattaa acacttaccg aatttttgcc aaaattcgaa actaagaaat tttttcattt
     8161 tttctccttt attttttggc tctgtgccat tttatacatt aatttcaact tccacaccaa
     8221 aatggtctga aataatcgga cgattctctc cattgaaaat cactaagctg gataaaactt
     8281 cctttttctg atttaagaaa atgtaatcca atcgtttttc ctgactgtga ccagcccatc
     8341 catcgatagc cttttcaacc gtaatcccct ggtctttttc catcgctaga ttgtatgaat
     8401 cataaagccc gagctctgta atcgcttcgt aggcctcgcg atctgagaag gcatcggtat
     8461 taaaatctcc catgagaatc ttaaaacgtc tattgccagt ccgttccaca atcgtacgaa
     8521 tgttatcaag ctggtcttcc tcttcactcc ctggaagatt gatgtgacaa gaatacaggt
     8581 cgatcaactg gtcttgatag aagaccgtca agcccataat ttttcgtgat aggatggaat
     8641 caatagattt attctgacta caataaaatg gatccacttc ataaactggc aacttggtaa
     8701 gaaaggcaat cccttcttcg tacttatcgt agccgatatg tgagttgctc caataatatg
     8761 aatagtcaaa ttgtcccaag gttcttaatt tttctaataa aatcaagcca taattatccg
     8821 ccttcaagtc tttcgttacc aaatcagcag ttatgagctg attgacctct tgaagagcga
     8881 tgacatcata agccttttca gctattgttt gggctaaaac atctagtttt tcatcctgcc
     8941 tttcttctaa ccaggcgtgg acattaattg ttagtaattt cattgctccc cctctctctg
     9001 aaaatgcgta accgttttct tttatagaaa tagtatagcg taaacgtttg cattagtcaa
     9061 tagcttttcc gtaatatttt aaacttttac gtaaaagttg tatattctac taaataaaat
     9121 agatgtattg cccctttcta gctcttttat gatacactaa tgggtagaaa gacaggaaac
     9181 tatgagtaag tataaaaaag tttatcaaga tattaagaaa aaaatcgaag agcaggtttg
     9241 gtcaactgga caggccctac cgacagaaaa tgaattaatg gaagtgtatt cctactccaa
     9301 ggacaccatt cgcaaagcac tatctcttct tgaaatggat ggttatattc aaaagaaaca
     9361 ggggaaatct tctattgtta tcgaacatgg tctaatgaag gaccaatatc tttctgaaat
     9421 taaaacagcg ggcgaattga acaaaagatc acagcaccaa attcagaccc agcttacttc
     9481 gctttatatt attcaaggtc aagaagattt aatgtcaact ttcgaagttg atgataaggt
     9541 agatttctat cgagtgagtc gggtacggac aattgacggt gagcggttgg aatatgacat
     9601 ttcctatttt gaccgtaggg tcgtccctta tctcagcaaa gaaattgccg aaagctctat
     9661 ttaccgctac ttagaagaag aactccattt aacaatttct cattccagac gtgaaatttc
     9721 cttccgtttt gcaaacgaag aagaaaaaca attgatggac ttaggagact atgacatggt
     9781 cgtcgtggtc actagtatca cctatctttc aaatggtcaa gctttccagt atgggactat
     9841 tagctatcgg cctgataagg taagctttgt atcaatggcg aaacggtaaa aggaaacttt
     9901 cgattttttg accaagtgta caaaacttct agaattctat agttataaaa agaatgtctc
     9961 cgcttttttg cagagacatt ctttgcattt atatactaag gagagcacca ataatggtaa
    10021 aaactggtcg gtttttattc ttcaacacat aggaagaatt gatctgataa gttttggagt
    10081 ggttcaatca actttcctac taattgttgg aattcaatta gttactgtgc cagatgtctt
    10141 gattgtactg ttcaatggta cggtctgatg agaagaatcc agctttggca atgttgtgaa
    10201 caactttctt gttccatgaa tcttgatctt cgtaatctgc aaagacttgt tcttttactt
    10261 caatgtattc agccaagtca atcaaggtca tgaaccagtc tttcgaaatc aattcatggt
    10321 gcagacggcc aagacgttct tcgttaccaa gtgcttttac ctcatcgcta acgataaagt
    10381 caactgcacg tttgatattg gcatcgccat tgtagtagtc agcagataca tatccagcct
    10441 tatcgtacaa gtcgatgatg gtatctgaat ctttaccaaa tgtatagatg ttatccatac
    10501 cagccaactc aacaatctca acgttggcac cgtccatggt accaagtgtc aatgcaccgt
    10561 tcaacatgaa tttcatgtta ccagtacctg acgcttcttt agaagccaat gagatttgtt
    10621 ctgaaatatc tgttgcaggg atcaattttt cagctacagt tacattatag ttttcaacca
    10681 aatgaacatt gaggtattta tttacttctg ggtcattgtt gatcaactca gacaagcaga
    10741 gaattaagtg aatgatgtct tgagcaatca cataagctgg ggcagcctta cctccgaaga
    10801 taacggtaat tttacgtttt ggaagcttac cattcttgat ttcaaggtat ttatggataa
    10861 catacaaggc attcatttgt tggcgtttgt actcgtggaa acgtttgatt tgtgtatcaa
    10921 taatagaatt ttcatccagc tcgataccct tattgtcttt caaataacgt ttgagagcca
    10981 atttgttgtt gtgtttgatt tccgccaact tagcatgaac ctctttgtca tcagcaaagg
    11041 ccagcaattt ttcaagttta gtcgcatctg tcaagtattc atcgccaatc aattctttga
    11101 tgtagtcagc gaggtcttgg ttggcaaatt ccaaccaacg gcggaaagtg ataccgtttg
    11161 ttttattgtt gaatttttct gggtaaagct cgtagaaagc tttcaattca gagtttttga
    11221 ggatttctgt gtgaagcgca gctacaccat tcactgagtt agagaagtgg atatccatgt
    11281 gagccatgtg tacacgacct gattcatcaa tgatttggac tgctgggtct ttaatttctg
    11341 cacgaataag ggcatccaat tctttgataa tatcaaccaa gtgcggcacc acttcttcaa
    11401 ggaactcaag tggccatttt tcaagtgctt ccgccaagat agtgtggttt gtgtaaccag
    11461 tcatattctt aacgatggca actgcttccg caaattcaat accatgtttt tcagtcaaaa
    11521 gacggatcaa ctcaggaatt accattgatg ggtgagtatc gttgatttgc acataagcgt
    11581 agtcagccaa gtcatgcaag tttgaaccgc gctcaattgc ttcatcaatc aaaagttgag
    11641 cagcatttga taccatgaaa tattgttggt agatacggag caattcacca ttcttatcag
    11701 aatcatctgg gtacaagaag agtgtcaagt tttctttaat atcagtcttg tcaaatgaaa
    11761 taccgtctgt aatcaagtca tagtttactg actcaatatc aaacaaattg aggtagttct
    11821 tagtctcttt tttatagcca agaatatcaa gacgatccaa ttttgatttc aaagtgaagt
    11881 ttttgaatgg aacatcatag ctgatagttg ttggaatcaa ccaagaatca ttttcgatcc
    11941 agaagtttgg ctctgcttct tgctcatttt tcttaaatac ttggcggaaa agaccacagt
    12001 ggtagttcag accaacacct tcaccgttga tagcaagtgt tgacatagaa tcaacgaaac
    12061 atgaagctag acgtcccaaa ccaccgttac caagtgatgg ttctggttca acatcttcaa
    12121 cctgcgccaa tgatttacca gctgctgcca attctgcttg aatgtctttg taaacaccca
    12181 agttaatcaa gttgtttgac aagagtttac cgataaggaa ctcagctgag atatagtaaa
    12241 ctttacgttt tcctgtgttt tttggttttg tagctgcagc ttcttttacg tagtttaaca
    12301 attgaagata gatttcttca tttgtcaaat cagctaattt cttcgaagta tttgtttctg
    12361 caaatgttgt aaatttagtc atggttttca tttcctcgtt ggtatagtaa tgtcattttt
    12421 gtcaagaagt ctttgcgttc ttgggtcaag tcttcagctt tcatgcgcca ttcccagttt
    12481 ccaccgatag ttgacggcat attcattcga ctttcttcac ccaagtctag gacgtcttgc
    12541 atggttgcaa tagctgtatc actcactgtt gcaaatagca tacggagcat agcttggcta
    12601 actttttcaa tcggcttacg gttgctgtag gcgtccacgt attcttgttg ttctggatca
    12661 agattgttgt accagccatt gacaacctca ttatcgtgag ttccagtgta ggcaactgaa
    12721 tttggaatgc aacgatgtgg agcatcgata ctcttacctg ttacatcaaa gaaaccaaat
    12781 tctaagattt tcatgcctgg atagccacaa tccgcaagca atttgcgagc tttagcgtca
    12841 atgtttccaa ggtcttctgc aatgattgga aggtctccaa gtgtttcttt gacagccttg
    12901 aagagattgt agccaggacc tggttcccag gtaccaacct tagctacttc tgccttacca
    12961 tcaacttgcc agaagtctga gaaacctttg aaatggtcaa tccgaaggac atcataaagt
    13021 ttgaaacttt catggatacg ataaatccac cagttatagc ctgttttttc atgttctggc
    13081 caatcgtaaa taggatttcc ccataattga ccatctgccg agaagttatc agctggtaca
    13141 ccagctacat aaagcggctt gcgttcactg tccaatttga atagttgggg ttttgtccac
    13201 acttcaacgc tatcagcaga aacatagatt ggcatgtctc cgatgatttt gatgtggtgt
    13261 ttgttggcat attctttcaa ttgtttccat tggctgaaga agaaatactg tgtgactttg
    13321 tagtagtcga tttgatttgc caattctaag cggtacttat caagagcttc ctcgttgcga
    13381 gctacaactt ttttatcttc ccattcttgg agagctttat taccaaagta ttccttgata
    13441 gccatgaact ccgcataatc tgtcagccaa gatgagttag ccttttcaaa ctccagaaaa
    13501 gcagctttct tcttatcatc ttgtaaaaat gcttgaacta ccttctccaa aattggtcga
    13561 cgaacttgat agataagagc atagtctact ttttcaggat tatctccaaa atttacatct
    13621 tggaaatctt ctgttgccaa taagccatct tcaaccaaga gatcaaagtc tatcaagtgt
    13681 gtatttcctg caatagcaga gaaagactgg taaggagaat ctccatagct tgtagttgtt
    13741 agtggtaaaa tctgccagta ggtttgcttg gtttccacca agaaatctac aaaatcatag
    13801 gcagactgtc caaaagtacc aataccaaac ttacctggaa gtgaggtaat atgcatcaaa
    13861 attccactgg tacgatttgt cataaaaacg ttttcctttc tgtcggttac gaatatagtt
    13921 taaagcaaac gtttgcactt gtcaaggatt ttataaaaaa agttttaatg tgctctagaa
    13981 agcctatttt atagcatttg ttagcgaata acaaaaaaga aaaatcagat atttctatcc
    14041 gattttccga attcttaact atttttaatc aaagctttgc tcttttattt ggatgcttcc
    14101 atcaaccaca tccgcttcca gatatttgac atcaacatga tccaaatagt aatctgttac
    14161 cttgtctcga atctgatttt caatcacacg gcgcagagga cgggctccca tggccttgtc
    14221 atagccttct tccatcaaaa attctttggc agcttccgtt accattaatt ggatgccttt
    14281 cttcgccagg gtattattga cctgggccaa gagtaattct acaatggctt tgagatcatc
    14341 tttatccaag tgcttgaatt cgataactgc gttaaaacga ttaaggaact ccggacggaa
    14401 gaatggtgcg atgcggtcca tgatgtcttg attttcttca ccttctgcca ttccataacc
    14461 aaaaccagca ttagaagtcg cgataataat agtattttta aagttaactt ggttgccctg
    14521 tccatcagtc aaatgcccat catctagcac ttgcaagaga agggtaatca cttgtgaatc
    14581 agctttttca atctcatcca gaagaacgat tgagtacgga ttgcggcgga cacgctcggt
    14641 aagagtatgg gaattgtcat cgtagccaat gtagccagct gtggtaccga ttaatttgga
    14701 aacggctgtc cgatcgctgt attcagacat atccaaacga ataatggcat ccttgttacc
    14761 aaacaagtct agcgctaact gttttgccaa ctctgtctta cccacacctg tcggaccgac
    14821 aaagaggaag gaaccaatcg gacggttgcc gtcatcaaaa cctgctcggt tacgacgaat
    14881 ggcacgagat acagcttcca ccgcatcgtc ttgaccgata acgttagctg ccagacgatt
    14941 tttcaattcc ttgagtcgtt caatatcaga agctcccatt tgtgagactg gaattcctgt
    15001 catgcgctca accgcctgag ccacatcatt aacagtcgcc accactttct gttgctccgt
    15061 atgattatca atctgttttt gtagcttatc aatacggact ttttcattca aggctttttc
    15121 ataatcctct ttttcagctg cttccaactg caactgtttt gcctcagcca tttctgcttc
    15181 caaggtctga atatctgtca caggatgttg tgcagccaaa tgtgcagcgg tcacatcgat
    15241 caggtcaata gccttatcag gcaagctacg ttgtggaata tattggacag aataatcaac
    15301 cgcagctctc aaaacctcat ctggcaattc aatattgtgg tgggcttcat aaagcggctt
    15361 gatccctttc aaaatctggt aggtgtcctc tgcggacgga gcattgacct tgacttcatt
    15421 gaaacgacga gccagagcag cattcttgtg aatggtattg cggtattcgt cctgtgtagt
    15481 ggcaccgata accgtcaatt ccccacggga taaagctggt ttgagaatat ccgctaaacc
    15541 cttggaacct gtgtccccac cagtgctacc agctcccaaa atctgatgaa tttcatcaaa
    15601 gaagagaatg atatttccag cttttttgac ttcatccaca agattttgca cattttcctc
    15661 aaaagcccca cgatactgag tcccagcttc caagcctgaa atgtcgatgg agatgatttc
    15721 cttgttctta atggctgctg gcacatcacc attgacaatg gcttgagcca atccttctac
    15781 taccgcagtt ttaccaacac cagcatcacc gaccaaaaca ggattatttt tcgtacggcg
    15841 agctaggatt tcagaggttt cttgaatttc cttgtttcgt ccaatgactg gatccaactt
    15901 cccttcacgc gcatcttgtg tcaaattgcg acccaatttt gcaagaattc catctgactt
    15961 tatctgacct ttagcctgtg tttgagccac ttcttctgtc tgtggcaggc gaccagtctg
    16021 acggtacata gcaaattctt ctggtgtcac ttcacgccca ttgatagaat aacggcgacc
    16081 ttctgtactg taaccaccta tattgcccat aagttgattg aaaatgtcgt ccatattgtt
    16141 aaagttattg aaattgttgt tcatagtttt tacctcgttt aagttttatt tgtttttaac
    16201 ttttactgac ctttgtttta aaaaaattga tttagtcttt tagtttgctt ttagtactag
    16261 ctcaaaaggt ttgaggaacc ttttgagctg tgcgggggta ggagtgaaac agtctgggg
//
LOCUS       DASFRC010000038        16156 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.038, whole genome shotgun sequence.
ACCESSION   DASFRC010000038 DASFRC010000000
VERSION     DASFRC010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 16156)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16156)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16156
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.038"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(72..305)
                     /locus_tag="U1087_000845"
     CDS             complement(72..305)
                     /locus_tag="U1087_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HEM4755343.1"
                     /translation="MLASIIAGAIIGLIVGALTSSDDRRGCLGNIILGLAGSWIGQLL
                     FGDWGPQFAGMALVPSVFGAVLLVAIFSSSRRN"
     gene            complement(361..1602)
                     /locus_tag="U1087_000846"
     CDS             complement(361..1602)
                     /locus_tag="U1087_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HEM4755344.1"
                     /translation="MVLPNFKENLAKYAKLLVSTGINVQPGHTVQLTIGVEQAELARL
                     IVKEAYAHGAAEVLVNWLDDVIARERLVNVDVELLEQVHPQRVTEMNYLLERKASRLV
                     VLSEDPGAYDGVDPEKLSRNARALSQALNPMRQASQANKISWTLGAASGLEWAKKVFP
                     NAASDEEAVDLLWDQIFKTCRIYEEDPIKAWEEHEARLVAKAKVLNDEQFVKLHYTAP
                     GTDLVLGMPKNHLWEAAGSVNAQGEHFIANMPTEEVFTAPDYRVADGYVTSTKPLSYN
                     GNIIEGIKVTFKDGEIVDVTAEKGDEVMKKLVFDNAGARGLGEVALVPDKSPISQSGV
                     TFFNTLFDENASNHLAIGQAYAFSIEGGTEMSQEELKEAGLNRSDVHVDFMIGSNKMN
                     IDGIREDGTRVPIFRDGEWAI"
     gene            complement(1819..2421)
                     /locus_tag="U1087_000847"
     CDS             complement(1819..2421)
                     /locus_tag="U1087_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012997947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEM4755345.1"
                     /translation="MSNFAKLQETRRTIYALGKELPVSNEEVVALVEKAMKEAPSAFN
                     SQSSRAVVLFGAESEAFWNEIAYSELEKVTPAEAFEGTKGRLASFAAGAGTILFFEDQ
                     DVVKGLQESFPLYAENFPIWSEQAHGINLYAVWLAFAEKNIGMNVQHYNPLVDARVAE
                     KYGIPANWKLRAQAPFGSIVAPAGEKDYMADSDRVKVFGN"
     gene            complement(2567..6958)
                     /locus_tag="U1087_000848"
     CDS             complement(2567..6958)
                     /locus_tag="U1087_000848"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PolC-type DNA polymerase III"
                     /protein_id="HEM4755346.1"
                     /translation="MSDKFQLLLQQIGMPLDARQSGAFSTATIEKVVLHKVSKLWEFT
                     FRFETPLPLMDYQLFKARLATEFEKVGNKIQFSIVSDAEAFEAGLVEAYYPEAFTEDL
                     CQSAGFKALFQPLEVAYRDGVLWIKGPETIDTDHFRKNHLPNLVEQYKRFGFGNLAVD
                     IQVCQEMTQQQAEIFHAQNEEIYQQANEENLAALEQLAQMAPPPEAAQPFVPEYKKNR
                     PAKVNIEKAEITPMIEVDSEENRIVFEGLVFEVEQKTTKTGRVIINFKMTDYTSSFTL
                     QKWAKNEEEAQKFDMVKKGNWLRVRGNVETNNFTRDLTMNVQEVQEVKKEIRKDLMPE
                     GEKRVEFHAHTNMSTMDALPAVEDLVARAAAWGHKAVAITDHGNVQSFPHGYHAARKA
                     GIKPLFGMEANIVEDSVPIAYNEADVVLSDATYVVFDVETTGLSAVNNALIQIAASKM
                     HKGNIIAEFDEFIDPGHPLSQFTTDLTGITDEHVRGSKPLEQVLREFQDFCQDSVMVA
                     HNATFDVGFMNVNYERAGLPIISQPVIDTLEFARNLYPDFKRHGLGPLTKRFGVALEH
                     HHMANYDAEATGRLLFIFLKDALEKHNLTNLNQLNTELIAEDSYKKARVKHATLYVIN
                     QVGLKNMFKLVSLSNTKYFEGVPRIPRTVLNAHREGLILGTACQEGEVFDDLLSKGID
                     EAVKTAAYYDFIEVMPPALYAPMIAKEQFKDKAEIEETIKQLIEVGRRAGLPVLATGN
                     VHYIDPEEEIYREIIVRALGQGAPINWTIGNGENAQPAPLPKAHFRTTSEMLDEFAFL
                     GESLAREIVITNPNAMLDRFEDVQVVKTDLYTPYIEKAEETVAELTYQKAFEIYGNPL
                     PDIIDLRIEKELTSILGNGFAVIYLASQMLVHRSNERGYLVGSRGSVGSSFVATMIGI
                     TEVNPMPPHYVCPNCQHSEFITDGSYGSGFDLPDKDCEKCGTKYKKDGQDIPFETFLG
                     FDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEENAFRAGTVGTVAAKTAYGFVRGYERD
                     YGKFYRDVEVERLAAGAAGVKRTTGQHPGGIIVFPDYMDVYDFTPVQYPADDVTASWQ
                     TTHFNFHDIDENVLKLDILGHDDPTMVRKLQDLSGIDPQTIPADDKGVMALFSGTEIL
                     GVIPEQIGTPTGMLGIPEFGTNFVRGMVEETKPTTFSELLQLSGLSHGTDVWLGNAQD
                     LIKAGIANLSTVIGCRDDIMVYLMHAGLPPKMAFNIMERVRKGLWLKISEEERNGYIQ
                     AMKDNKVPDWYIESCGKIKYMFPKAHAAAYVMMALRVAYFKVHHPLYYYCAYFSIRAK
                     AFDLATMSGGLERVKAKMEEIALKKKNNEASNVEQDLYTTLELVNEMLERGFKFGKLD
                     LYKSHATDFLIEDDTLIPPFVAMDGLGENVAKQIVAARAEGEFLSKTELRKRGGLSGT
                     LVEKMDEMGILGKMPEDNQLSLFDDLF"
     gene            complement(7082..8071)
                     /gene="dhaQ"
                     /locus_tag="U1087_000849"
     CDS             complement(7082..8071)
                     /gene="dhaQ"
                     /locus_tag="U1087_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DhaKLM operon coactivator DhaQ"
                     /protein_id="HEM4755347.1"
                     /translation="MVFIRNRQATIIEDYLDGFCRTNPKVKKVKGLPIVLQKVQDDHL
                     VPIISGGGSGHEPAHIGFVGKGMLTAAVYGEIFTPPTAEEVLAAIRAVDKGKGVFLIV
                     KNFEADLVSFRKAIELARQEGIAVKYIVSHDDISVDTKNNFRMRHRGLAGTILLHKIL
                     GAAALTGYSLDELEQLGLSLATEIATIGFATKSAYLPNAALPLFDLEEGQISYGIGIH
                     GEEGYRTVRFESSEQLANEIVNKLKLKFRWKEGEDYILLVNNLGSMSEVEQGIFLNDI
                     CQFLELEGLQFSYIKTGKFMTSLDMGGISVTLCRVKDRKWLDFLEAPTEAAAW"
     gene            complement(8082..8627)
                     /gene="dhaS"
                     /locus_tag="U1087_000850"
     CDS             complement(8082..8627)
                     /gene="dhaS"
                     /locus_tag="U1087_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase transcriptional
                     activator DhaS"
                     /protein_id="HEM4755348.1"
                     /translation="MPTSLITKKRIAKAFKKQLSQKSFDKISVVDIMQEAGIRRQTFY
                     NHFLDKYELLDWIFETELQEQVTDNLTYISGIKLLDELLYYIESNQSFYRQLFEIKGQ
                     NDFVSYLEGYFMVLMEKIINEYQLQEGKMISQQDKHFLILYHANAWIGLIKEGLTQSP
                     CQIHSYWKQMVALVRESFVIL"
     gene            8775..9764
                     /gene="dhaK"
                     /locus_tag="U1087_000851"
     CDS             8775..9764
                     /gene="dhaK"
                     /locus_tag="U1087_000851"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003049938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HEM4755349.1"
                     /translation="MKKIINQPERVVDEMLKGLVFMHQDLVDRIDGFDVIIRKAEKTG
                     KVGIISGGGSGHEPSHAGFVGKGMLSAAVCGAVFTSPTPDQILEAIKAADEGAGVFMV
                     IKNYSGDIMNFEMAQELAEMEGIEVDSVVVDDDIAVENSLYTQGRRGVAGTILVHKIL
                     GHAAETGKSLAEIKELADRLVPQIKTIGLALSGATVPEVGKPGFVLEEDEFEYGVGIH
                     GEPGYKKEKLQPSAKLAEELVEKLAEGFDIQDGEHYGVLINGLGATPLMEQYVFANDV
                     AQLLAKKGVVVDYKKIGNYMTSIDMAGLSLTLIKLEDPSWIDALQAPVEVVAW"
     gene            9775..10350
                     /gene="dhaL"
                     /locus_tag="U1087_000852"
     CDS             9775..10350
                     /gene="dhaL"
                     /locus_tag="U1087_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit L"
                     /protein_id="HEM4755350.1"
                     /translation="MDAKQALLWMETFNKKIQEDKDYLSELDSPIGDGDHGGNMARGM
                     AAVMQELSEKDYETADQVFKVVAMQLLSKVGGASGPLYGSAFMGITKASQAGADLADT
                     LQAGLEMIQKRGKAELGEKTMVDVWIPVIAALRENQLTTEIIHKAVQGTKDIAATKGR
                     ASYVGERSIGHIDPGSFSSGLLFEAMLEAGL"
     gene            10347..10721
                     /locus_tag="U1087_000853"
     CDS             10347..10721
                     /locus_tag="U1087_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002960428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS-dependent dihydroxyacetone kinase
                     phosphotransferase subunit DhaM"
                     /protein_id="HEM4755351.1"
                     /translation="MTKVGILLVSHSKNLAQGIIDLVSEVAKDIPITYCGGLEDGSIG
                     TSFEIVQERVEANPADTLLAFFDLGSARMNMELAADFADKQILIQTVPVVEGCYTAAA
                     LLQAGADLETILEQLQELEIKK"
     gene            complement(10767..12620)
                     /locus_tag="U1087_000854"
     CDS             complement(10767..12620)
                     /locus_tag="U1087_000854"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000814078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HEM4755352.1"
                     /translation="MKQSKMIIPTLREMPSDASVISHALMLRAGYVRQISAGIYSYLP
                     LANRVIEKAKNIMREELDKIDAIEFLAPALLSADIWRESGRYETYGDDLYKLKNREGS
                     DFILGPTHEETVTLLARDAVQSYKQLPLNIYQIQPKYRDEKRPRNGLLRGREFIMKDG
                     YSFHASYESLDQTYDDYKAAYEAIFTRAGLEFKAIIGDGGAMGGKDSQEFMAITPDRT
                     DLDRWVVLDKSVASFEEIPEDVLEAIKEELLAWSVSGEDTIAYSSESGYAANLEMATS
                     EYKPSTAVVVEEDLVKVATPGAKTIDEVAAFLNVAEEQTIKTMLFMADGEPVVALLVG
                     NDQVNDVKLKNHLGADFFDVASPADAEKVFGAGFSSLGPVGLPENIKIIADRKVQDVK
                     NAVVGANEDGFHYTGANAGRDFQVTEYVDIREVKEGEPSPDGHGVLNFARGIEIGHIF
                     KLGTRYSDSMNANILDENGRSMPIIMGCYGIGVSRLLSAVLEQQARLFVNKTPKGEYR
                     YAWGINFPKELAPFDVHLIPVNVKDEAAMELTQSIEASLVGAGYEVLTDDRNERVGVK
                     FSDSDLIGLPIRVTVGKKAADGIVEVKIKGTGDTVEVHVDQLLETLQILNK"
     gene            complement(12943..14202)
                     /gene="rseP"
                     /locus_tag="U1087_000855"
     CDS             complement(12943..14202)
                     /gene="rseP"
                     /locus_tag="U1087_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HEM4755353.1"
                     /translation="MKGILAFIFIFGVIVVVHEFGHFYFAKKAGILVREFAIGMGPKI
                     FAHTGKDGTLYTIRILPLGGYVRMAGWGEDKTEIKTGSPASLRLNEAGVVTRINLSGK
                     QLDSLSLPMNVTSFDFEEKLEITGLVLEESKTYKVDHDATIVEEDGTEVRIAPLDVQY
                     QNATVWGRLMTNFAGPMNNFILGILIFILLFFMQGGVANPSSNAVSIAEGGALQAAGV
                     VTGDKILSVNGNTTDSYTEVATIISKAATDATTAPSFDLVVEHDGKNRHVSVTAEQVD
                     GAYRIGISPILKTGFVDKIVGGFQEAGATALRVVTALKNLIANFDVKQLGGPVAIYKV
                     SSQAAEFGLVSVLGLMAALSINLGIFNLIPIPALDGGKIVMNILEAIRRKPLKPETES
                     YITLAGVAVMVVLMIVVTWNDIIRVFF"
     gene            complement(14212..15018)
                     /locus_tag="U1087_000856"
     CDS             complement(14212..15018)
                     /locus_tag="U1087_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HEM4755354.1"
                     /translation="MTNDLQKRVIFGGIALAIFIPFLLAGGIAFQFFVGLLAIIATAE
                     LIKMHRLAPNSIEGVLAMLASLVLALPLQNYLTFLPMDGNYTAYAIVVFLLLGSTVFN
                     IGHYNYSDVVFPIASSFYVGIGFHSLILARMDGLNKVLFALCLVWATDIGAYLIGRQI
                     GRRKLLPKVSPNKTVKGFVGGILSAVVVAIIFLIVDKSLLAGYSFGRMLLLVVIFSTF
                     SQFGDLVESAIKRHFGVKDSGKIIPGHGGILDRFDGMIFVFPIMHFFGLF"
     gene            complement(15028..15783)
                     /locus_tag="U1087_000857"
     CDS             complement(15028..15783)
                     /locus_tag="U1087_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HEM4755355.1"
                     /translation="MFKFNFKKKESIETAIEVPKHIAVIMDGNGRWAKKRMQPRIMGH
                     KAGMDALQKVTKTASDLGVKVLTVYAFSTENWSRPKKEVKFIMNLPVEFYDKYVPELH
                     ANNVKIQMIGDHSKLPVPTLNALYKAEQKTKSNTGLILNFALNYGGRDEVTRAVKAIA
                     QDVLDAKFNPGDIDEKLIADYLYTGTLSPTLRDPDLVIRTSGELRLSNFLPWQTAYSE
                     LYFTDIAWPDFDGEALKLAIKEYNRRHRRFGGV"
BASE COUNT         4544 a         3923 c         3293 g         4396 t
ORIGIN      
        1 atacagcaat tcacgcaaat tcaaaacaaa taaaaccaaa cctcatccga agtttggttt
       61 cacagttcat tctaattccg tctggaactg ctaaaaattg ccaccagcaa tactgctcca
      121 aagactgacg gtaccagggc cataccagca aactgtggac cccaatcacc aaagagcaac
      181 tgtccaatcc atgaacctgc aagaccaagg ataatatttc caagacaacc acgacggtca
      241 tccgaagaag tcaaagctcc cacgatcaaa ccgataatcg cacctgcgat aatacttgct
      301 aacatagtac ttcctttcta ttgacaaaaa gactggtcgc ccagtcttat agcatcattt
      361 ttagattgcc cactcaccgt cacggaagat tggcacacga gtaccgtctt cacggatacc
      421 gtcaatgttc atcttgttag aaccaatcat gaagtccaca tggacatcag aacggttaag
      481 gcctgcttct ttgagctctt cttggctcat ttctgtacca ccttcgatag agaaggcata
      541 ggcttggcca atcgccaagt ggtttgacgc attttcatca aagagggtgt tgaagaaggt
      601 cacacctgat tgagaaattg ggctcttgtc tggcacaagg gcaacctcac cgagaccgcg
      661 agcaccagca ttatcaaaga ccaatttctt catgacttca tcgccttttt cagccgttac
      721 atccacgatt tcaccgtctt tgaaggttac tttgatgcct tcgatgatgt taccgttgta
      781 gctgagtggt tttgtagacg ttacataacc gtctgccaca cggtagtcag gtgctgtgaa
      841 gacctcttct gttggcatgt tggcaataaa gtgttcacct tgggcattga ccgaaccagc
      901 cgcttcccac aagtgattct tcggcatacc gagaacgagg tcagttcctg gtgctgtgta
      961 gtgcaatttg acaaactgct cgtcgttgag gaccttagcc ttagccacca agcgtgcttc
     1021 atgctcttcc caagccttga ttggatcttc ctcgtagata cggcaagtct tgaagatttg
     1081 gtcccaaagg aggtccactg cctcttcgtc agacgctgca tttgggaaga cttttttagc
     1141 ccattccaaa ccagaggctg caccgagtgt ccagctgatt ttgttagctt gggatgcttg
     1201 ccgcattggg ttcaaagcct ggctgagtgc acgagcgttg cgagacaatt tctctggatc
     1261 cacaccgtcg taagcacctg gatcttctga caaaacaacc aaacggctag ccttacgctc
     1321 caagaggtag ttcatttcag taacgcgttg tggatgaact tgttccaaga gttccacatc
     1381 tacattgacc aaacgttcac gcgcaatcac atcgtccaac cagttgacca agacttcagc
     1441 cgcaccgtgg gcgtaagctt ctttgacaat caagcgtgcc aactcagcct gctccacacc
     1501 gattgtcaat tgaaccgtgt gaccaggttg gacattgata cctgttgaaa ccaagagttt
     1561 agcatattta gcgagatttt ctttaaaatt tggtaatacc atctttttct cctttgtact
     1621 ttgaaatacc ctattattgt atcatatttt aagctagaca gataaaaaaa cttcctgctg
     1681 atacaggaag ttagctctgg aagatagttg aagcttggag atgaaacgtc aatactctct
     1741 tatttctagg cattgacttg aactgtttca atcaggcaag gtgagttaac gacgtaataa
     1801 agcaaactgt aaactttact agttaccaaa aacctttaca cggtcagaat ccgccatgta
     1861 atctttttcc cctgctggag ctacgatgct accgaatggt gcttgggcac gaagtttcca
     1921 gttagctggg ataccgtatt tttcagccac tcgtgcatca accaatgggt tgtagtgttg
     1981 tacgttcata ccgatatttt tctcagcgaa agccaaccat actgcgtaca agttgatacc
     2041 gtgagcttgt tcagaccaga ttgggaagtt ttcagcgtaa agcgggaagc tctcttgcaa
     2101 gcctttgacc acgtcttgat cttcgaagaa caagatagta cctgcacctg ctgcaaagct
     2161 agccaaacga ccttttgtgc cttcaaacgc ttctgcaggc gttacttttt ccaattcgct
     2221 gtaggcaatt tcgttccaga aagcttctga ctccgcacca aaaagtacta ctgcacggct
     2281 tgattgtgag ttgaaagctg atggagcttc tttcatggct ttctcaacaa gtgctaccac
     2341 ttcttcattt gatactggca attctttacc aagtgcgtag attgtacggc gagtttcttg
     2401 aagttttgca aagtttgaca taggatttcc tcttttctta ttgttactac atagtagttt
     2461 ttatcactat gtagagatta tatacctatc aaaaacatta gtcaagagtt ttgacttctt
     2521 tttataaaaa aaaattcact gcttccaaaa gaaacagtga acaagtttaa aacaaatcat
     2581 caaagagact gagctggttg tcctctggca ttttaccgag gatgcccatt tcatccattt
     2641 tttcgaccag tgtacctgac aatcctccac gcttacggag ttctgtcttg gagaggaatt
     2701 ctccttcagc acgcgccgcc acaatctgct tagcaacgtt ctctcccagg ccatccatgg
     2761 caacaaatgg tgggatgagg gtatcatctt caatcaagaa atcggtcgca tgggacttgt
     2821 aaaggtccaa tttcccgaac ttgaagccac gttccagcat ttcatttacc aactcaagtg
     2881 tggtatagag atcctgctca acgttcgaag cttcattgtt tttcttcttg agggcgattt
     2941 cttccatctt agccttgact cgttccaagc caccggacat ggttgccaaa tcaaatgcct
     3001 tggcccgaat agagaaataa gcgcaatagt agtaaagtgg gtgatgaacc ttgaaatagg
     3061 caacccgcaa ggccatcata acgtaggcag ccgcgtgggc tttagggaac atatacttga
     3121 tttttccaca ggattcgatg taccagtctg gcaccttgtt atccttcatg gcttgaatgt
     3181 agccatttcg ctcttcctca gaaatcttga gccacaagcc cttccgcacc cgctccatga
     3241 tattaaaggc catcttaggt ggcaaacctg cgtgcatgag gtaaaccatg atgtcatccc
     3301 gacaaccgat aacagtagat agattagcaa ttcctgcctt aatcaagtcc tgggcattgc
     3361 ccaaccaaac gtctgtaccg tgcgatagac cagataactg caagagttcc gaaaaagtgg
     3421 tcggtttggt ttcctccacc atcccccgta caaagttggt tccaaattca ggaatgccca
     3481 gcatacctgt cggtgtccca atctgctctg ggataacacc cagaatttcc gtaccagaaa
     3541 aaagagccat aaccccctta tcatcagcag gaatagtttg cggatcgatg cctgacaagt
     3601 cctgcaactt ccgaaccatg gttggatcat cgtgtcccag aatatcgagt ttcaagacgt
     3661 tttcatcaat atcgtggaag ttaaagtggg tggtctgcca gctggctgtc acatcatcgg
     3721 caggatactg aacaggggta aagtcataga catccatgta gtcagggaat acgataattc
     3781 ctcctgggtg ctgaccagtc gtccgtttga caccagcagc accagcagcc aggcgttcta
     3841 cttccacatc tctatagaat ttgccataat cccgctcata gcctcggaca aaaccatagg
     3901 ccgtcttggc cgccaccgta ccaaccgttc ctgcacggaa ggcattttct tcaccgaaaa
     3961 tatcccgaac atccaaatgg gcagacggtt ggtcatcccc tgagaagttc aagtcaatat
     4021 cgggaacctt gtctccatcg aaaccaagga aggtctcgaa aggaatgtcc tgtccatctt
     4081 ttttatactt ggtcccacac ttttcacaat ccttgtctgg caggtcaaaa cctgaaccat
     4141 aggaaccatc tgtgataaat tcactgtgtt gacaatttgg acagacatag tgaggaggca
     4201 tagggtttac ttcggtaatc ccaatcatgg tcgcaacgaa actggagccg acagaccccc
     4261 gtgaacccac caggtagccc cgctcgttgg aacggtgcac caacatctgc gatgccaggt
     4321 aaatcacggc gaatccatta cccagaatgg acgtcaattc cttctcaatc cgcaggtcga
     4381 taatatctgg aagaggattg ccataaattt caaaggcttt ctgataggtc aattccgcaa
     4441 ccgtttcctc ggccttctca atataaggcg tataaaggtc ggtcttaacc acctgaacat
     4501 cttcaaaccg gtccagcatg gcattgggat tggtaatgac aatctcacga gccagacttt
     4561 ctcccaagaa tgcaaactcg tccaacatct cgctggtcgt tctaaagtgg gcttttggca
     4621 gtggtgctgg ctgagcgttc tcaccatttc cgatggtcca gttaatcggt gccccttgac
     4681 ctagagcacg aacaatgatt tcccgataga tttcctcttc ggggtcaatg tagtgaacat
     4741 ttcctgtcgc cagaacaggc agacctgccc tacgtcctac ctcaatcaac tgcttaatag
     4801 tctcttcaat ctctgccttg tccttaaact gctccttggc aatcatggga gcatagaggg
     4861 ccggtggcat gacttcgata aaatcataat aggctgccgt tttaaccgct tcatctatcc
     4921 ctttggagag caagtcatcg aagacctcac cctcttgaca ggctgttccc aatattaaac
     4981 cttcacgatg ggcattgaga acggtccgtg gaatacgtgg aactccttca aaatacttgg
     5041 tattggaaag agagaccagt ttgaacatat ttttcaaacc aacctgatta atcacataga
     5101 gcgtggcatg cttgacacga gccttcttat aggaatcctc cgcaatcagc tccgtattta
     5161 gctggttgag attggtcaaa ttgtgcttct ccaaggcatc ttttaggaag atgaagagca
     5221 ggcgccctgt cgcctccgca tcgtagttag ccatgtggtg gtgttcaaga gcaacaccaa
     5281 accgcttggt gagaggacct aaaccatgac gcttaaagtc gggataaagg ttacgagcaa
     5341 attccaaggt atcaatgaca ggctggctaa taataggtaa gcctgctcgt tcatagttga
     5401 cattcataaa gccaacgtca aaggtcgcgt tgtgggcaac catgacggaa tcttgacaga
     5461 aatcttgaaa ctcacgcaga acttgttcta gaggtttaga accacgcaca tgctcatctg
     5521 tgattcctgt cagatctgtt gtaaattgac tgagcggatg acccggatcg ataaactcat
     5581 caaattctgc aatgatatta cccttgtgca tcttagacgc cgcaatctga atcagggcat
     5641 tgttaactgc agagagacct gttgtttcca cgtcaaagac cacataggtg gcatcagaca
     5701 ggactacatc tgcttcgttg taagcaatag gcacagagtc ctcgacaata ttagcctcca
     5761 tcccgaagag cggcttaatc ccagctttac gggcagcatg atagccatgg gggaaggatt
     5821 gaacattgcc gtggtcggta atcgccaccg ccttgtgtcc ccaggctgct gcacgcgcca
     5881 ccaagtcctc aacggcaggc agggcatcca tagtagacat gttggtatgg gcatgaaact
     5941 caacccgctt ctcaccctca ggcataaggt ccttacgaat ttccttcttg acctcctgga
     6001 cttcctgtac gttcatagtc aaatcacgag tgaaattatt ggtctccaca ttgcctcgca
     6061 cccgcaacca gttgcccttt ttgaccatat caaacttctg ggcctcttcc tcattcttag
     6121 cccacttctg caaggtaaag gacgaagtat agtcggtcat cttaaagttg ataatgactc
     6181 gccccgtctt ggtcgtcttc tgctcgacct caaagaccag tccctcaaag acaatccgat
     6241 tctcctcgct atccacctca atcataggcg taatctcagc cttttcgata ttgaccttgg
     6301 caggacgatt tttcttatat tctgggacaa atggctgagc tgcctctggt ggtggcgcca
     6361 tttgagccag ttgttcaagg gccgccaagt tttcttcatt agcctgctgg taaatttctt
     6421 cattttgcgc atggaaaatc tccgcttgtt gctgcgtcat ttcctgacag acttggatgt
     6481 ccaccgcaag attaccaaaa ccaaatcgct tgtattgctc cacaagattt ggcagatgat
     6541 tcttccgaaa atgatctgtg tcaatggttt caggaccttt tatccacaaa acaccatctc
     6601 tataagccac ctctaatggc tgaaaaagag ccttgaagcc tgcactctgg cacaaatctt
     6661 ccgtaaaagc ttctggataa tatgcttcta ccaaaccagc ttcaaaagcc tccgcatcgc
     6721 tgacaataga aaattgaatc ttattgccca ccttttcaaa ctccgtcgcc aaacgagcct
     6781 tgaagagttg atagtccatg agcggcaagg gggtttcaaa acggaaggta aattcccaaa
     6841 gtttactgac cttgtgcaag actactttct caatcgttgc agtcgaaaaa gcccctgatt
     6901 gtcgtgcatc aagaggcatt ccgatttgtt gtagcaagag ttgaaactta tctgacatac
     6961 ttatttcctt tgtagttcgt tagaaacatt ttaccataaa tgaggtattt tttcctgagt
     7021 caggaagaaa aaactctcag gtcatttcct gagagatctg atttctatag aaattagtag
     7081 cctaccaagc cgcagcttct gtaggcgcct ctaaaaaatc cagccatttt cgatccttaa
     7141 cacgacagag ggtgacagaa attcctccca tatcaagact ggtcataaat ttacctgttt
     7201 ttatatagga aaactgtaaa ccttctagct ctagaaattg gcaaatgtca ttcaaaaaga
     7261 ttccttgctc aacctcagac atagatccaa gattattgac cagaagaata tagtcttccc
     7321 cctccttcca gcggaatttt aattttaatt tgttcacaat ttcgttggct aactgctcag
     7381 aggattcaaa acgaacggtc cgatagcctt cttctccatg gataccgatg ccgtaagata
     7441 tttgtccctc ctccaaatca aacaaaggca gggcagcatt gggcaaatag gccgacttgg
     7501 ttgcaaaacc gatggtcgca atctctgttg ccagagacag tcccagctgt tccaattcat
     7561 ctaggctata gccagtaagg gcagcagctc ctaatatctt atgaagtaga atggtccctg
     7621 caagccccct atgccgcata cggaaattat tcttagtatc gaccgaaata tcgtcatggg
     7681 atacgatgta cttgactgca attccctcct gccgagccaa ttcgatggct tttctaaaag
     7741 agacaaggtc tgcctcaaag ttttttacaa ttagaaaaac tcccttaccc ttatctactg
     7801 cacgaatggc tgccaatact tcttcagcgg ttgggggcgt aaatatttca ccatatactg
     7861 ctgcagtcag catacccttt ccgacaaatc caatatgtgc cggttcatgc cccgatccac
     7921 cacctgaaat aattggaact aaatggtcat cctgcacttt ctgaagcaca atcggaagtc
     7981 ccttcacttt cttcacttta ggattggttc gacagaaacc atccaaataa tcttcaataa
     8041 ttgttgcctg tctatttcta ataaacacca tatattaact cctacaaaat cacaaacgac
     8101 tcgcgaacaa gagccaccat ttgcttccaa taactgtgaa tctgacaagg tgactgtgtc
     8161 agtccttcct ttatcagtcc aatccaagca ttagcatgat agagaatcaa aaaatgctta
     8221 tcctgttggg aaatcatttt accctcctgg agctggtact cgttgataat tttctccatc
     8281 aaaaccataa agtagccttc taaatagctg acaaaatcat tttgcccctt aatctcaaag
     8341 agttgcctat agaaagattg gttactctcg atgtagtaca aaagctcatc cagaagcttg
     8401 attccactaa tataggtcag attgtcagtt acctgctcct gcaattctgt ctcaaatatc
     8461 cagtccagca actcatactt gtctaaaaaa tggttgtaaa aggtttgacg acgaatccct
     8521 gcttcctgca tgatgtcgac aactgagatt ttatcaaagg atttttggga tagctgtttt
     8581 ttaaaagcct ttgcaatcct tttctttgta atcaacgagg ttggcatatg tcacttcctt
     8641 tcgcttcctc tttattatac cctatcatgc ttttctttgg aacaaaaggg acacattgga
     8701 caatctgtcc cttccttttt tcttttggac aatgtagaat aaaagcgcaa acaaaaaaac
     8761 aaaggagttt tctcatgaaa aaaattatca atcaacctga acgtgtcgtt gatgaaatgt
     8821 taaaaggact tgtctttatg caccaagatc ttgtcgatcg tatcgatgga tttgatgtga
     8881 ttatccgcaa ggctgaaaaa actggtaaag tcggcatcat ctcaggaggt ggctctggtc
     8941 acgaaccttc tcatgcaggc tttgtcggca agggcatgtt gtccgccgct gtatgtggcg
     9001 cagtatttac ctcaccaaca ccagaccaaa tcttggaagc catcaaggct gctgacgagg
     9061 gagctggcgt ctttatggtc atcaaaaact actctggcga catcatgaac tttgagatgg
     9121 cgcaagaatt ggcggaaatg gagggcattg aagtggacag tgtcgttgtg gacgatgaca
     9181 tcgctgtgga aaacagcctc tatacccaag gacgtcgtgg tgtagcaggt accatccttg
     9241 tccacaagat tctcggtcac gctgcagaaa cgggcaaatc gctggctgag attaaggaac
     9301 tggctgaccg tctcgtccca caaatcaaga ctatcggctt agccctatca ggtgctacgg
     9361 taccagaagt gggcaaacca ggcttcgtcc ttgaagagga tgaatttgaa tacggtgtcg
     9421 gtatccatgg tgaacctggc tataagaaag aaaaactcca accatctgct aaattggctg
     9481 aagaattggt tgagaaattg gcagaaggct ttgatattca agatggcgag cactatggtg
     9541 tccttatcaa cggtctcggc gcaacccctc tcatggaaca atatgtcttt gccaacgacg
     9601 ttgctcaatt gctggctaaa aaaggtgtgg tcgttgacta caagaaaatc ggtaactaca
     9661 tgacatcgat tgatatggct ggactgtcat tgaccttaat caaactagaa gacccaagct
     9721 ggattgacgc tttgcaggcc cctgttgaag tggtagcttg gtaggagaaa gactatggat
     9781 gcaaaacaag cactgctctg gatggagaca ttcaacaaaa aaattcaaga agacaaagat
     9841 tatttgagtg agctagattc tccaattgga gacggagatc acgggggcaa catggcgcga
     9901 ggaatggctg ccgtcatgca ggagctatct gagaaagact atgagactgc tgaccaagtc
     9961 tttaaggtgg ttgccatgca acttctcagc aaggttggcg gtgcttccgg tcctctctac
    10021 ggctctgcct ttatgggtat tactaaagcc agtcaagctg gcgctgattt ggcagatacg
    10081 cttcaagcag gtttggagat gatccaaaaa cgcggcaagg ctgaattggg cgagaaaacc
    10141 atggtagacg tttggattcc cgtcattgct gccctaagag aaaaccagct gacaacggaa
    10201 attatccata aagccgttca agggacaaag gatattgctg cgaccaaggg acgcgcgtcc
    10261 tatgttgggg aaaggtctat tggacacatt gatccaggct ctttctcatc tggacttctc
    10321 tttgaagcca tgttggaggc aggactatga caaaggttgg tatcttactc gtatcccatt
    10381 caaaaaattt agcccaggga atcatcgacc tagtatctga agtcgcaaaa gatattccca
    10441 tcacctactg tggcggacta gaagatggta gcatcggtac cagctttgaa atcgtacaag
    10501 agcgagttga agcaaaccct gctgataccc tccttgcctt tttcgaccta ggtagcgccc
    10561 gaatgaacat ggaacttgct gccgattttg cagacaaaca aattcttatc caaaccgtac
    10621 cagtcgtcga aggttgctat actgccgcag ctctcttaca ggctggagct gacttggaga
    10681 ctattcttga acaattacag gagcttgaaa tcaaaaaata aatacaaatt taaaagccga
    10741 ggtataaaaa cttcggcttt ttcttattac ttattcaaaa tctgcaaggt ttcaaggagt
    10801 tggtccacat ggacttctac agtatcacct gtgcccttga ttttcacttc gacgatgcca
    10861 tcagctgctt tcttaccaac agtcacacgg attggcaagc caatcaagtc actgtcagaa
    10921 aacttaacgc cgacacgctc attacggtcg tcagttaata cttcatagcc tgcaccaacc
    10981 aaacttgctt cgatagactg agtcaattcc atcgccgctt catctttgac attgactgga
    11041 atcaaatgca catcaaacgg agccaattct ttagggaagt tgatccccca agcgtaacgg
    11101 tattcgcctt ttggtgtctt gttgacaaag aggcgagcct gttgctcaag aacggctgat
    11161 aagagacggc taacaccgat accataacaa cccataataa tcggcataga acgaccattt
    11221 tcatccaaga tattggcatt catgctatct gaataacggg taccaagctt gaagatatga
    11281 ccaatctcga taccacgggc aaagttgaga accccgtgtc catctggaga cggttcgcct
    11341 tccttgactt cacgaatgtc cacatactca gtcacttgga aatcacgacc tgcattggca
    11401 cctgtgtagt ggaaaccatc ttcgttggca ccgacaacag catttttcac atcttgaacc
    11461 ttacggtctg caataatctt gatgttttct ggtaaaccaa ctgggccaag agaactaaag
    11521 cctgcaccga agactttctc tgcatcagct gggcttgcta catcaaagaa atctgcgcca
    11581 aggtggtttt tcaacttgac atcgttgacc tggtcattgc caacaagaag ggcaacaact
    11641 ggctcaccgt ctgccataaa gagcatggtt ttgatcgttt gctcttccgc aacattcaag
    11701 aaggcggcta cttcgtcgat ggttttagca cctggtgtag caactttaac caaatcttct
    11761 tcaaccacaa ctgctgtact cggtttgtac tcgctagttg ccatttctag gttggcagcg
    11821 taacctgatt cgctagagta ggcaatggtg tcttcaccag acacagacca tgccaagagt
    11881 tcttccttga ttgcttcaag aacatcctct gggatttctt caaaagaagc aacagacttg
    11941 tccaagacaa cccaacggtc caggtcagta cggtctggtg taatagccat aaactcctgg
    12001 ctatccttac cacccatggc accaccgtca ccgataatgg ccttgaactc caatcctgca
    12061 cgagtgaaga ttgcctcgta agccgccttg tagtcatcgt aggtctggtc caagctttca
    12121 tagctagcgt ggaagctgta gccatctttc atgataaact cgcgaccacg gagaagaccg
    12181 ttacgagggc gtttttcatc acggtatttt ggctggattt ggtagatgtt aagcggcaac
    12241 tgcttgtaag actggaccgc atcacgcgcc aatagcgtca ccgtttcttc gtgggttgga
    12301 cccaagataa agtcagaacc ctcacggttt ttgagcttgt agaggtcgtc accataggtt
    12361 tcataacgac ctgactcacg ccaaatatcc gcggacaaga gggctggtgc caaaaattca
    12421 atggcatcaa tcttatcaag ctcctcacgc atgatatttt ttgctttttc aatcacacgg
    12481 ttagccaaag gcaagtagct gtaaatacca gcagaaatct gacggacata gcccgcacgt
    12541 aacatcaaag cgtggctaat caccgacgca tccgaaggca tctcccgcaa agtagggata
    12601 atcattttag actgtttcat agttaagata taagtgcgtt aagaaaacga aacgaaaata
    12661 ggaaacctaa cgcagtgcct ttggcactag gcaggtttat ctttttcgta aagtttttag
    12721 cacgcattca attcctttcg tagtttactt gactggaaga caaagaatta acttttcaac
    12781 cccctcgctg acgctcgagt tcaaatctga aaactctctg ttcctttctt tttcgtattt
    12841 tttcagaaca tcctgcgttt agcacgcatt caattccttt cgtatttttc agaacatcct
    12901 gcgtagcacg cattcaattc ctttcataaa tttcaaatta tcttagaaga agactcttat
    12961 aatatcattc caagtgacta ctatcataag aaccaccata acggctacac ctgctagagt
    13021 gatataagat tccgtctctg gtttgagtgg ttttctgcga atggcttcca gaatattcat
    13081 aacaatctta ccaccatcca aggctggaat tggaatcaaa ttgaagattc caaggttaat
    13141 ggagagcgca gccatcagcc ccaacacaga gaccaaacca aattcagccg cttgagaact
    13201 tactttataa atagcaaccg gtccccccaa ctgcttaaca tcaaagtttg caattaggtt
    13261 cttcaaggct gttacaaccc taagagctgt cgctcccgct tcttggaaac caccgacaat
    13321 tttatcaacg aaaccagttt tcaaaatcgg tgaaatacca attcgatagg ccccatctac
    13381 ttgttcggca gtaacggaga catgacggtt tttcccatca tgctcaacaa ccaaatcaaa
    13441 gcttggggct gttgttgcat ctgtcgctgc tttgctaata atcgttgcaa cttctgtgta
    13501 gctatctgtc gtgttcccat tgaccgaaag aatcttgtcc cctgtgacaa cacccgcagc
    13561 ctgcaaagca ccaccttcag caatacttac tgcattgctt gatgggttgg caaccccgcc
    13621 ttgcatgaag aacaaaagaa taaatattag aattcctaaa ataaagttat tcatgggacc
    13681 cgcaaagttg gtcatcaacc gtccccagac tgtcgcattt tgatactgaa catcaagtgg
    13741 agcaatccga acttctgttc catcttcctc tacaatcgtg gcatcgtgat caaccttata
    13801 ggtcttgctt tcttccaaga ccaagcctgt gatttccaat ttttcctcga agtcaaaact
    13861 ggttacattc attggcaaac tgagactatc cagttgctta ccagataaat taatccgcgt
    13921 cactacacca gcttcattca gtctgaggct ggcaggacta cctgtcttaa tctctgtctt
    13981 atcttcaccc catccagcca ttcgaacata gccacctagg ggaaggatac ggatggtgta
    14041 aagtgtccca tccttacctg tatgagcgaa aattttggga cccatcccaa tcgcaaattc
    14101 cctcacaagg ataccagctt tcttggcaaa gtagaaatga ccaaattcat ggacaaccac
    14161 aatcacacca aatataaata taaatgctaa aattcccttc atagtacctc cttaaaataa
    14221 tccaaagaag tgcatgattg gaaagacaaa aatcatacca tcaaaacgat ccaggatacc
    14281 gccgtgtcct ggaataattt ttccagaatc cttcacacca aaatggcgtt taatagcact
    14341 ttctactaaa tctccgaatt gtgagaatgt cgagaaaatc acaaccaaca acaacatcct
    14401 gccaaatgaa tagcccgcta acaaggactt atcgacaatc aagaaaatga tagcaactac
    14461 caccgcagaa agaataccgc ctacaaagcc tttaaccgtt ttattcggtg aaaccttcgg
    14521 caataatttt ctccgaccaa tctgacgacc gattaagtaa gcaccaatgt ctgttgccca
    14581 gactaaacag agggcaaata agactttatt gagcccatcc atacgagcca gtatcaaact
    14641 atgaaagccg ataccaacat agaaacttga tgcaattgga aagactacat cggaatagtt
    14701 gtaatggccg atattaaaaa ccgtcgaacc aagcagtaaa aatactacaa tggcgtaggc
    14761 tgtgtaattt ccatccatcg gtaaaaatgt cagataattc tggagcggaa gagccaagac
    14821 taaactggcc aacatagcta agacaccctc gatagaattg ggtgctaggc ggtgcatttt
    14881 aatcaattca gccgtagcaa tgatggctaa caggcctaca aaaaattgaa atgctatccc
    14941 accagccaac aaaaagggaa tgaaaatagc tagagcaatg ccaccaaata tcactcgttt
    15001 ctgtaaatcg tttgtcatac cttctcctta tacaccgcca aaacgtctgt ggcgacggtt
    15061 gtattcttta atcgctaatt taagtgcttc tccatcaaaa tcaggccaag caatatctgt
    15121 aaagtacagc tcactgtagg ctgtttgcca cggcaggaag ttgctaagac gaagttcacc
    15181 acttgtacgg ataactagat cgggatcgcg taacgttggt gataaggttc ctgtatagag
    15241 gtaatccgct attaatttct catcaatatc tccaggattg aacttggcat ccaagacatc
    15301 ttgcgcaata gccttgactg cgcgagtcac ctcatcacga ccgccatagt taagagcaaa
    15361 attgagaatc aaaccagtgt tactctttgt cttttgttcg gctttataaa gcgcattgag
    15421 agtcgggaca ggaagttttg aatggtcacc aatcatctga attttgacat tattggcatg
    15481 gagttcagga acatacttat cataaaactc cacaggtaga ttcatgataa acttcacttc
    15541 ttttttcggt cgagaccagt tttctgtaga aaaggcatag acagttaaca cctttactcc
    15601 caaatcagaa gccgtcttgg taaccttttg aagtgcatcc ataccagcct tatgccccat
    15661 aatacgtggc tgcatccgct ttttcgccca acggccattg ccatccataa tcacagcgat
    15721 atgcttaggg acttcaattg ctgtttcaat gctttctttc tttttaaaat taaatttaaa
    15781 catggtattt tccttaagat agtatttagt ctgttttctc cgttctactg acaaaaaata
    15841 aggacataat cagcttatta taccatattt ataggcagct aagcaaaaat cagctagctc
    15901 attcttaagt acaatgtagt tatttctcgt tcaatttata tcttatctct aatctagtcc
    15961 agtcaccaaa ctacactagc tagccgtatc ttttatagta aattaataag tgtaatagct
    16021 tattgcgacc gcctgtttgc cttggagaat gactggactg acttatctac ttaggaacgg
    16081 ctacataaat gccagacaga gttgtcaccc ttgatggatg agttctttga ctggtgtctc
    16141 aatcaggccg tcttgc
//
LOCUS       DASFRC010000039        16010 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.039, whole genome shotgun sequence.
ACCESSION   DASFRC010000039 DASFRC010000000
VERSION     DASFRC010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 16010)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16010)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16010
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.039"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..1813)
                     /gene="alaS"
                     /locus_tag="U1087_000858"
     CDS             complement(<1..1813)
                     /gene="alaS"
                     /locus_tag="U1087_000858"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000661542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEM4755356.1"
                     /translation="MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSG
                     VATLKKYFDGSVIPDNPRITNAQKSIRTNDIENVGKTARHHTMFEMLGNFSIGDYFRD
                     EAIEWGFELLTSPEWFAFPKDKLYMTYYPDDVDSYNRWIALGVEPSHLIPLEDNFWEI
                     GAGPSGPDTEIFFDRGTDFDPENIGLRLLEEDIENDRYIEIWNIVLSQFNADPAVPRS
                     EYKELPNKNIDTGAGLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNMS
                     FKVIADHIRALSFAIGDGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETV
                     GNIMESYYPEVLEKRAFIEKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGR
                     DIFKLYDTYGFQVELTEELAEHRGMTLDIAGFEAAMKEQQDRARASVVKGGSMGMQNE
                     TLAAITEESTFVYGQTALEASLSVIVADNARTEAVSEGQALLVFDQTPFYAEMGGQVA
                     DHGFVKNAAGDIVATVIDVQKAPNGQPLHTVELSASISVGQTYTLEIETKRRKGVEKN
                     HTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHF"
     gene            complement(2204..2689)
                     /locus_tag="U1087_000859"
     CDS             complement(2204..2689)
                     /locus_tag="U1087_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LURP-one-related family protein"
                     /protein_id="HEM4755357.1"
                     /translation="MKQFQVKQRFTFGGEKFDIRDSFGDLAYQVEGSFLEIPKRFIVT
                     NSRGGEVCQITKKFLTFLPQFTIDMAEGHSFYLQKEFTFFKDRYTVENLGLILDGNIW
                     DLDFRLKRPDGMLVAEISKELFHLPSHYSVTVLEDSYADLVISLVVAIDYIEMMEDAS
                     T"
     gene            complement(2954..3955)
                     /gene="prsA"
                     /locus_tag="U1087_000860"
     CDS             complement(2954..3955)
                     /gene="prsA"
                     /locus_tag="U1087_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PrsA"
                     /protein_id="HEM4755358.1"
                     /translation="MKQTKKILAGAVTLFAAVTLAACSNAADKDIITMKGNTITVSEF
                     YEKVKTNSQAQQVLLSMVISNVFENQYGDKVSAEEVNKEYDKKAEQLGASFNAALSSA
                     GLTEESYKEQIRTNKLVEYAVKQAAEKELTDENYKAAYDAYTPEVTARVIKLADEAKA
                     KEVLAAAQAEGADFAQLAKDNSTDTTTKDNGGEVKFDSTSTTVPEEVQKAVFALDAGQ
                     VGASVISSVDMKTYTTSYYVVKLDAKSEKSAKWEDYKDKLKEIILAQKQRDSSFVATV
                     LKEALQKANVKVKDSAFQNLLSQYVTTEESSSSSTKSSSSSTESSSSTTESSSSSGQ"
     gene            complement(4016..4735)
                     /locus_tag="U1087_000861"
     CDS             complement(4016..4735)
                     /locus_tag="U1087_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-methyltransferase"
                     /protein_id="HEM4755359.1"
                     /translation="MVETYSKNANHNMRRPVVKEEIVDFMRTRQAQNTGFLKELEEFA
                     HQENIPVIPHETVAYFRLLMQTLQPKCILEVGTAIGFSALLMADNSPHSKITTIDRNE
                     EMIGFAKENFAKYDQRQQIELLEGEAMDILPTLPDDAYDFVFMDSAKSKYIVFLPEVL
                     KKVKVGGLIILDDIFQGGDVAKGIKDVRRGQRTIYKGLQRLFDATLDNPDVTASLVSM
                     SDGLLMLRKNVENVDLKHIEI"
     gene            complement(4810..5358)
                     /locus_tag="U1087_000862"
     CDS             complement(4810..5358)
                     /locus_tag="U1087_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755360.1"
                     /translation="MLTEEQLQDIFELADLMSNGDRELFLQLREVVFASDPHEILNFM
                     ERILDSESFDDFLDRVGESEKENLWLILIKLLEHLNYICVRDYKDNLEDFIYFFDCLQ
                     QVRNAGISLKLDSGGLSPIASISEWARVIDNKYLDENFCLGAVDMDTDSYYLFFSKQA
                     TFIRLQELAGNLGYRIDYAKNM"
     gene            complement(5374..5814)
                     /locus_tag="U1087_000863"
     CDS             complement(5374..5814)
                     /locus_tag="U1087_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755361.1"
                     /translation="MISYKRSIVIPSVISLVLILLGLGGLTKQEPSMGSVVYLIFLQV
                     LLVYLYILRKQKAVFILTKQYLEFQEHFWSERQRHSLEEIAEIRYIVSPVYRGYQSKR
                     LRIVGNKGGLFAVVSLNRLDGADFNDIYHFVEQVAPHIRWDFSN"
     gene            complement(5816..7618)
                     /gene="pepF"
                     /locus_tag="U1087_000864"
     CDS             complement(5816..7618)
                     /gene="pepF"
                     /locus_tag="U1087_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoendopeptidase F"
                     /protein_id="HEM4755362.1"
                     /translation="MSKQRYEIEEKYQWDLTTIFPTDEAWEAELADLQAETEKTKEFA
                     GHLLDSAKSLLTISETQLGLMRRIEKLYVYASMKNDQDTREGKYQEFQAKAMGLYAAF
                     SQAFAFYEPEFMAITEEKLEAFKVEEPALVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
                     SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAM
                     YGTYEQFQHTYAKTLQSNVKVNNLKARLRKYDSARHASLAANFIPESVYDTLVAAVNK
                     HLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALKKCQETLEIFGEDYS
                     AIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSL
                     HSMLTRKTQPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFR
                     GTVFRQTQFAEFEQAIYKADQEGQVLTADFLNELYGQTNEKYYGLSAEENPEIQFEWA
                     RIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSLNVIAKA
                     GVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL"
     gene            complement(7848..8789)
                     /locus_tag="U1087_000865"
     CDS             complement(7848..8789)
                     /locus_tag="U1087_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein CoiA"
                     /protein_id="HEM4755363.1"
                     /translation="MLVALDEDGQVFNVLENPAPQGRYSCPGCGGLVRYKSGKVLRSH
                     FAHVTLRDCHYFSENESAQHLSLKSCLYSWLINAEQVELEKCLPSIGQVADLFVNDRL
                     ALEVQCSSLPISRLQLRTQAYHEAGLQVLWLLGKGLWIKERLSKLHKQFLSFSMNMGF
                     HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLDILRLPFAKQALSHLTC
                     PLDRDLPRYIAQQLYYKSPNWLALQAESYSRGENLLTRTAEEWYPHIRLPRSAIGFAQ
                     IQKDLTLVYQDFDQYYGNIEDKQKQVLYPPIIYRKPM"
     gene            complement(8850..10853)
                     /gene="metG"
                     /locus_tag="U1087_000866"
     CDS             complement(8850..10853)
                     /gene="metG"
                     /locus_tag="U1087_000866"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019313364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HEM4755364.1"
                     /translation="MTKTPFYITTPIYYPSGKLHIGSAYTTIACDVLARYKRLMGHDV
                     YYLTGLDEHGQKIEEKAKEAGLTPQAYVDGMAVGVKELWNLLDISYDKFIRTTDDYHE
                     EVVAAVFEKLLAQDDIYLGEYSGWYSVSDEEFFTESQLEEVFRDENGKVTGGIAPSGH
                     EVAWVSEESYFLRLSKYQDKLVEFFNAHPDFIQPDGRLNEIMKNFIEPGLEDLAVSRT
                     SFTWGVPVPSNPKHVVYVWIDALLNYATALGYGQEETANYDTFWNGTVYHMVGKDILR
                     FHSIYWPIMLMMLDMKLPDRLVAHGWFVMKDGKMSKSKGNVVYPEMLVERFGLDPLRY
                     YLMRSLPVGSDGTFTPEDYVGRINYELANDLGNLLNRTVAMINKYFGGQVPTFVANVT
                     DFDADLAAVVADNLASYHKYMEAVDYPRALEAVWNIISRTNKYIDETAPWVLAKEEAD
                     RDKLAAVMAHLTAGLRVVAHLIQPFMMTTSNAIMEQLGLGTAFDLENLDFAGLPAGLT
                     VVAKGTPIFPRLDMEEEIAYIQAQMGGSSTISREEEKEWNPADVELKNEKAAIKFEDF
                     DKVEIRVAEVKEVAKVEGSDKLLQFRLDAGDGQDRQILSGIAKYYPNEQELVGKKVQI
                     VANLKPRKMMGLLSQGMILSAEHGDNLTLLTVDPSVPNGSQIG"
     gene            11010..11603
                     /locus_tag="U1087_000867"
     CDS             11010..11603
                     /locus_tag="U1087_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1361 domain-containing protein"
                     /protein_id="HEM4755365.1"
                     /translation="MFTKKNILTHLFFLIIAVGLKRYDVTAPDLTWNMFLALVALDFA
                     ILTNHTKSHILKVIAGLLWLFFYPNTFYMVTDIVHMHFANTVLWQRESMILFMLYVPS
                     IFFGVMAGVESVRLIFSAFSIKSYWLKLFMISGLSLLSSFAIHIGRYARLNSWDIFTR
                     PTVVIDEMLAVISWDAFPFILGFTFIQIMVLVFSINE"
     gene            11903..12940
                     /locus_tag="U1087_000868"
     CDS             11903..12940
                     /locus_tag="U1087_000868"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HEM4755366.1"
                     /translation="MKEGDLLFTPISEKIDINQVREHSKLSPETLAKKQARDRELEAI
                     LKGEDDRLLLVIGPCSSDNEEAVLDYAHRLAKLQEEVKDKIFMVMRVYTAKPRTNGDG
                     YKGLMHQPDTDAAPSLINGIKAVRNLHYRIITETGLTTADEMLYPENLPLVDDLVSYI
                     AIGARSVENQQHRFVASGIDVPTGLKNPTSGNLKVMFNGLFAAQKKQSFLFNNTEVET
                     SGNPLAHVILRGAVNENGKYLPNYYYDNLLETIELYDQFGLKNPFIIIDTNHDNSGKN
                     YLEQIRIIRQTLINRDWNESIRNYVRGFMIESYIEDGRQDNPDVYGKSITDPCLGWEK
                     THELIREIYNR"
     gene            12950..13975
                     /locus_tag="U1087_000869"
     CDS             12950..13975
                     /locus_tag="U1087_000869"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018364383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HEM4755367.1"
                     /translation="MGIHKRSTSLDIDKVKELSKLEGEFLAAKNQRDEELKRIIRGED
                     DRLLLVIGPCSSDNEEAVLEYARRLSKLQEEVKDKIFMVMRVYTAKPRTNGEGYKGLV
                     HQPDTSKLPDLINGIAAVRNLHYRVITETGLTTADEMLYSANYPLVEDLVSYHAIGAR
                     SVEDQEHRFVASGVDMPTGMKNPTSGNLTVMFNGIYAAQNKQNFIYRDAEVDTDGNPL
                     AHAILRGANTEKGGYEPNYYYDILLKTIKQYEQFGLKNPFIVIDTNHDNSGKNYLEQI
                     RIVRQTLINRDWNEAIRKYVRGFMIESYLEDGRQDSPEVFGKSITDPCLGWEKTEALI
                     REIHQTV"
     gene            14021..14884
                     /locus_tag="U1087_000870"
                     /pseudo
     CDS             14021..14884
                     /locus_tag="U1087_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735696.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
     gene            14904..15971
                     /locus_tag="U1087_000871"
     CDS             14904..15971
                     /locus_tag="U1087_000871"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HEM4755368.1"
                     /translation="MKLTVNLPNTPYDILIQRGSLAQTGAWVKELWKPQKIAIITDDH
                     VGSLYAETVQSSLEAAGFESIVFAFPEGEASKNLDTVNQAYEFLVQHGMTRSDGIIAL
                     GGGVVGDLAGFVSSTYMRGIHFLQIPTSLTAQVDSSIGGKTGVNTPFAKNMIGTFCQP
                     DGVLIDPDTLKTLGKRELIEGMGEVVKYGLIDDLELWEKLEHLDGSVESILEHADYII
                     YHSCEVKRKVVVEDELDNGVRLYLNFGHTIGHAIEATAGYGQVMHGEAVAIGMVQISR
                     AAEKKGLMPAGMTEKIIAMCEKFGLPTTHQPWNVDELYAALSHDKKARGKTIKLVIVP
                     QLGQAAIHQIPMEEMLEFLQV"
BASE COUNT         4664 a         3582 c         3143 g         4621 t
ORIGIN      
        1 caaaatgcgt aaagtcaaag cggaggaagt cttgctcgtt caaggaacca gcctgtgttg
       61 catgctcgcc gataatattg tgaagagctg catggagcaa gtgagttgct gtgtggttct
      121 tctcaacacc cttacggcgt tttgtttcga tttcaagtgt gtaggtttga ccaactgaaa
      181 tacttgcgga cagttctacg gtgtgcaatg gctgaccatt cggtgctttc tgcacatcga
      241 tgacagtcgc aacaatgtct ccagcagcat ttttcacaaa accatggtct gcaacctgac
      301 cacccatttc tgcatagaat ggtgtttggt caaagacaag gagggcttga ccttctgaga
      361 ctgcttctgt acgcgcatta tcagccacaa tgacagataa gcttgcttca agagctgttt
      421 ggccgtaaac aaaggtcgac tcttctgtga tagcagccag ggtttcattt tgcataccca
      481 ttgaaccacc tttgacaact gaggcacggg cacggtcttg ttgctctttc atagccgctt
      541 caaaaccagc aatatcaagg gtcataccac ggtgctcagc caattcttct gtcaattcta
      601 cttggaaacc ataggtatca tagagtttga aaatgtcgcg accatcaatc tcagacttac
      661 cttctgctgc taatttgtcc atcaattgct cagcaaattg tgaacctgta tggatagtac
      721 gagcaaatga ctcttcttca ctcttaacaa tcttctcaat gaaggcacgt ttttcaagta
      781 cttctggata gtagctttcc ataatattgc caactgtctc caccaatttg tacaagaatg
      841 gctccgtaat gcctaaacgt tggccatgca tagaagcacg acggagaaga cgacgaagga
      901 cataaccacg gccttcattt ccaggaaggg caccgtcacc aatagcaaaa gaaagggcac
      961 ggatgtggtc tgcaataacc ttgaagctca tgttgtcgcc atcttggtca taggtcttac
     1021 cagaaatctt ttctacttca cgaatgattg gcaagaagag gtccgtttca aagttggtct
     1081 tagccccttg gaaaatagct gccaaacgct ccaaacctgc gcccgtatcg atgtttttgt
     1141 ttggcaattc cttgtactca gaacgcggaa cagctgggtc tgcgttgaac tgggacaata
     1201 cgatattcca aatctcgatg taacggtcat tttcaatatc ttcttccaag agacggagac
     1261 caatgttttc agggtcaaag tcagtaccac ggtcgaagaa aatctccgta tctggaccag
     1321 aaggacctgc accaatttcc cagaagttat cttcaagcgg aatcaagtgg cttggctcaa
     1381 caccaagagc aatccaacga ttgtatgaat ccacatcatc aggatagtaa gtcatgtaga
     1441 gcttgtcttt tggaaaagca aaccattctg ggcttgtcaa gagctcaaac ccccactcaa
     1501 tcgcttcatc acggaaataa tcaccaatag agaagttacc aagcatttca aacatggtgt
     1561 ggtggcgggc tgtcttacca acattctcga tgtcgttggt acggattgat ttttgggcat
     1621 ttgtaatccg tgggttatct ggaatgacag agccatcaaa gtatttcttg agggttgcca
     1681 caccagagtt gatccataaa agagtaggat cgtttactgg gacaagattt gctgaaggct
     1741 caacagagtg accctttgat ttccagaaat ccaaccacat ttgacgaatt tgagcagaag
     1801 ataaattttt cataaactaa gataccaaga gcgttaagaa agcgagaaga aaataggaga
     1861 ccaacgctgt gcgccagcgc actaggcggt ctatcttttt ttcgacgctt ttagctcggg
     1921 ttcaatttaa cgaaacagtt aaattaaaca tttcctttca tatagtaata attgagggga
     1981 aagtccgtag cccgagttca actaagatac taagggcgtt aagcggacac cgtcaaaata
     2041 ggaaacctga cgaagacgct tgcatctagg aagtgtttct ctttttgaca aagtccgtag
     2101 cccgagttca tttcagaata aactcgatac cctttccttt cataagtgat agttaggcgg
     2161 gttcaattta acggaccagt taaactgaat gattatttca cgattaagtc gatgcatctt
     2221 ccatcatttc gatgtagtca attgcgacca ctaaggaaat gaccaaatct gcataggagt
     2281 cctccaatac agtaacggag taatgagaag gtaaatgaaa gagttctttg gagatttcag
     2341 ctacgagcat accatctggc cttttcaagc gaaaatccaa atcccagata tttccgtcta
     2401 ggattaaacc tagattttcc acagtatagc gatccttgaa aaaagtaaat tccttttgca
     2461 agtagaaaga atgaccctct gccatatcaa tggtaaactg gggcaggaag gtcaaaaact
     2521 tcttagtaat ctgacaaact tccccacctc tagaattggt cacgataaat cgttttggaa
     2581 tttcgagaaa agatccctcc acttgataag caagatcccc aaaactatca cgaatatcaa
     2641 atttttcacc accaaaggta aagcgctgtt tcacttgaaa ttgcttcatg ataacctcca
     2701 aaaaaataac aagaaatcaa acgaagggcg aaaaaccgcg gtaccacctt cattcaatga
     2761 cttgtcattc tcatttaaga aactgtatcc acaagcaaaa aacttatata tataagccac
     2821 aaactgtgaa tacaggctct actattcaat tgtaatatta agtagcaaaa tacttggctt
     2881 agatggctcg caacaaccgc caattttctg aactaaggtg tcaagtacca attcttaata
     2941 agtaaatcgt caattactga cctgatgaac tagaagattc tgttgtagaa gaagaacttt
     3001 cagtcgacga agagctgctc ttcgttgagg aagaactgct ttcttctgtt gtcacatact
     3061 gtgaaagaag attttggaaa gcactatctt taaccttaac gtttgctttt tggagtgctt
     3121 ctttcagcac agtagcaaca aatgatgaat ctctttgctt ttgtgccaaa ataatttctt
     3181 tcagcttatc tttataatct tcccatttag cagacttttc tgatttagca tccaatttta
     3241 caacgtaata actcgttgta tacgtcttca tatctaccga agaaatcacc gacgctccga
     3301 cttgacctgc atccaaggca aataccgctt tctgtacctc ttctggaaca gttgttgaag
     3361 ttgaatcgaa tttaacttcg cctccattgt cttttgtagt agtatccgtg gaattgtctt
     3421 tcgccaattg agcaaaatct gcaccttcag cttgtgcagc agctaaaact tcttttgctt
     3481 tagcttcgtc tgccaacttg atgacacgtg ctgttacttc aggtgtatag gcgtcataag
     3541 ctgccttgta gttttcatct gtcaattctt tctcagcagc ttgttttaca gcatactcaa
     3601 ccaatttatt ggtacgaatt tgttccttat aggattcttc tgtcaatcct gccgaagaaa
     3661 gtgccgcatt aaaagaagca ccaagttgtt ctgccttctt atcatattcc ttatttactt
     3721 cttctgcaga gactttgtca ccatactgat tttcaaatac attactgata accattgaca
     3781 gcaaaacttg ttgagcttgt gagtttgttt ttactttctc ataaaactca gacacagtaa
     3841 tcgtgttacc tttcatcgta atgatatctt tatcagctgc attggaacaa gcagcgagtg
     3901 ttactgcagc aaagagtgtt actgcacctg cgagaatttt tttagtttgt ttcattaaag
     3961 actctctcct tttttcatta acccctttat tataacacaa aagcttaaaa acttcttaaa
     4021 tttctatatg ttttaagtca acattctcta catttttcct caacataagg agaccgtcac
     4081 tcatggaaac aagactagca gtcacatctg gattatccaa agtcgcatcg aataaacgtt
     4141 gcaatccctt ataaatagta cgctgccctc ttctgacatc cttgatgcct ttggcaacat
     4201 ctcctccttg gaagatatca tccaaaatga ttagaccgcc tactttgacc tttttcaaga
     4261 cttctggtaa aaatacaata tattttgatt tagcagaatc catgaaaaca aaatcgtatg
     4321 cgtcatctgg taaagtcgga agaatgtcca tggcttcccc ttccagcaat tcaatctgct
     4381 ggcgctgatc atatttggca aagttttcct tagcaaatcc aatcatttct tcatttcgat
     4441 caatcgtcgt aatcttcgag tgcgggctat tgtcagccat cagtaacgca gagaagccaa
     4501 tagcagttcc aacttctaaa atacatttag gttggagtgt ctgcatcagc aagcggaaat
     4561 aagctaccgt ttcatgaggg ataactggaa tgttttcttg atgagcaaac tcttccagtt
     4621 ctttcaaaaa ccctgtattt tgcgcctgac gtgttcgcat aaaatccaca atttcttcct
     4681 tgacaaccgg gcggcgcata ttgtgatttg cgtttttact atatgtttcg accatagaat
     4741 ccattatatc ataagccgac aagattttct tcctcaacac actaaaaggt aggtttcccc
     4801 accttttctt tacatatttt tggcgtaatc aattcgatac cctaaatttc cagctagttc
     4861 ttgaagtcga ataaaagtcg cctgcttact gaaaaagaga tagtaactat ccgtgtccat
     4921 atctactgcc cctagacaaa agttttcatc aagatatttg ttatcaatga ctcttgccca
     4981 ttctgaaata gatgcaattg gacttaatcc acctgaatcc aatttaagag aaattcccgc
     5041 attgcggacc tgctgaaggc aatcaaaaaa gtagataaaa tcttcaagat tgtccttata
     5101 atcacgcaca caaatatagt tcaaatgctc tagtaatttt atcaagatta accaaagatt
     5161 ttccttttca gactctccaa cacgatccaa gaaatcatcg aatgactctg aatctaaaat
     5221 acgttccata aaattgagaa tctcgtgtgg atcactggcg aagactactt ctctaagttg
     5281 gagaaatagt tccctatcac catttgacat taaatctgct aattcaaaaa tatcttgtag
     5341 ttgttcttct gttaacatag tcccctctct ttattaattt gaaaaatccc atcttatatg
     5401 cggtgctact tgctctacaa aatggtaaat atcattaaaa tctgcaccat caagcctatt
     5461 caagctgacg actgcaaata gtcccccctt atttcctaca attcgcaaac gtttcgactg
     5521 atagccacga tagacaggag aaacgatgta tcgaatctct gcaatctctt ctaacgaatg
     5581 gcgttgacgt tcactccaaa agtgttcttg aaattctagg tactgttttg tcaagataaa
     5641 aactgccttt tgctttctca atatatataa ataaactagc aaaacttgta aaaatatcag
     5701 atagacaaca cttcccatag atggctcttg cttggtcaaa ccaccaagac ccagcaagat
     5761 taaaacaagg ctaatcacac tgggaatgac aatcgaacgt ttataggaaa tcatattaga
     5821 ggtgcacacc tttctcaacg agagcttcta attcttccaa acgagcttca aataccttga
     5881 aggcatcatt gaggtaatct tccttggtca tgtctacgcc agccttagcg atgacattga
     5941 gggaataatc tgagctacca gccttcaagt agttgagata gttttctttg tcttctggac
     6001 taccattgac aatcttgttt gctagagctg atgctgctgc aaaacctgtc gcatattgat
     6061 agacatagaa attgtaatag aaatgtggaa tacgagccca ctcaaactgg atttctggat
     6121 tttcttcggc agaaagtccg tagtatttct cgtttgtctg accgtacaat tcattgagga
     6181 aatcagctgt caagacctga ccttcctggt ctgccttata gatagcttgt tcaaactcgg
     6241 caaattgggt ctggcggaag actgtaccac ggaaaccatc taggtaatga tttagaatag
     6301 caaagcgttc cttgtcatct tctacttctg ccaagagttt ttcagtcaga aggttttcgt
     6361 tggtagttga agcaatttca gccaagaaaa gtgaataatg gccatagaca tagggttgag
     6421 tcttacgagt caacatggaa tgaagagaat gtcctgtttc atggataagg gtgtacatgt
     6481 tatccaagtt atcctgccag ttgagaagca tgaaggcgtt ggtgtcgtag gcacctcctg
     6541 agtatgctcc tgagcgtttt ccttcattaa catggacatc aatccagcgg ttttcgaagg
     6601 cttccttcac aatagccgaa taatcctcgc cgaagatttc caaggtttct tgacattttt
     6661 taagagcatc ttcataagaa atcttggtgc tgaaatctga caatggtgtg tacatatcgt
     6721 acatcttcaa gtcatcaatc cccaggagct tcttacgcaa attgatgtaa cgatgcaaga
     6781 gcggaaggtg cttgttgact gccgccacta atgtatcgta aacagattct ggaatgaaat
     6841 tagctgcaag tgatgcgtgg cgagctgagt cgtacttccg taaacgagct ttcaggttat
     6901 tgactttgac attagactga agggtcttag cgtatgtatg ctggaactgc tcgtaggtac
     6961 cgtacatagc ttcgtatgct tcttggcgga catcacggtt tttagactcc ataaagtgga
     7021 tgtagtttcc gtgtgaaagt ggcaccaagt gaccgtcttc atctgcgatt tctgggaaac
     7081 gcaggctagc attgtccaag actgagaagg tttcagcagg tgattcaaaa atctcgctgg
     7141 ttgccgcaag gacttcttcc acctcttgtg acaggacatg gtccttggct gccagaagtt
     7201 tttcaaattg gtggctgtac tgaacaagag ccggttcttc tactttaaag gcttccaatt
     7261 tctcttcagt aatagccata aattcaggct catagaaggc aaaagcctgt gaaaaggcag
     7321 catacaagcc catggcctta gcttgaaatt cctgatattt tccttcgcga gtatcttggt
     7381 cgttcttcat agacgcatag acatagagtt tttcaatgcg acgcataaga ccaagttgcg
     7441 tttcactgat tgtcaaaagg ctcttcgctg agtcgagcaa gtgacctgca aattcttttg
     7501 ttttttcagt ttcagcttgt aaatctgcaa gttctgcttc ccaagcttca tccgttggga
     7561 aaatagtggt caaatcccac tggtattttt cttcaatttc gtaacgttgt ttagacataa
     7621 ttaatcctcc gtatccttta ttctaacata aaaaatcccc tctttccaac ggaaagtgag
     7681 ggattatagg ttactatttc aactggaaaa cagtttttgc cattcgctat cgcaagtcgt
     7741 cactaggcta acaaagtcta caaccttcac cgacagtagt atgactaaca taaaatattg
     7801 agcatatttt caaaagtaat atatacacct ccatcagcta tctctattta cattggtttt
     7861 ctataaatta taggtggata tagaacctgt ttctgcttgt cttcaatatt gccgtaatac
     7921 tggtcaaaat cctgataaac tagggttaaa tctttttgta tttgggcaaa gccaatggca
     7981 gagcggggca gacggatgtg gggataccat tcttctgccg tccttgtcag caaattctcc
     8041 cctctgctat aagactctgc ctgcagggct aaccaattgg gggatttgta ataaagctgt
     8101 tgagcaatgt agcgaggcaa atccctatct aacgggcaag taagatgcga taaagcttgc
     8161 ttggcaaatg gcagacgcaa gatgtccaat aaatttccct cgccaaatgg aaaaaccttt
     8221 gtcagacagt ggaccttacc tcgtaagtct tcgtgaataa ggtaacgaag acgcaattcc
     8281 ttcttctcat catccaattc ccagaggtga aaacccatgt tcatactaaa agagagaaat
     8341 tgcttgtgta atttacttaa tctttctttt atccataggc cttttcccaa cagccagaga
     8401 acctgaagac cagcttcatg ataggcttgc gtcctcagct gcaaacgaga aatgggcaga
     8461 ctggaacatt ggacttccaa agctagacga tcattgacaa ataaatcagc gacctgccct
     8521 atactaggca ggcatttttc aagttcaact tgttcggcat tgattaacca actgtacaga
     8581 caagacttaa gtgacagatg ctgggctgac tcattctcag aaaaatagtg gcagtcccgc
     8641 agggttacat gggcaaagtg cgaacgcaga acttttccgg atttgtatcg gaccagtcct
     8701 ccacaacctg gacaagaata gcgaccttgt ggcgcaggat tttccaagac attaaaaact
     8761 tgcccatctt catcaagtgc aactaacata aaacctcctt tctttattag ttcgcaaaaa
     8821 aacacccagc tgtgctgagt gttgtgaatt tacccaatct gactgccgtt tggcacagat
     8881 ggatcgactg ttaagagtgt taaattgtca ccatgttcgg ctgataggat catgccctga
     8941 ctgagcaagc ccatcatctt acgtggctta aggttggcaa cgatttgaac tttcttgccg
     9001 accaactctt gctcatttgg atagtacttg gcgataccag acaagatttg gcggtcttgt
     9061 ccatcaccag cgtccagacg gaattggagc aacttgtcag aaccctctac tttggctact
     9121 tctttgactt cggctacgcg gatttccacc ttgtcaaagt cctcgaactt gatcgcagct
     9181 ttttcatttt tgagttccac gtcagctggg ttccactctt tttcttcctc tcgggaaata
     9241 gtagagctac cacccatttg ggcttggata taggcgattt cctcttccat atccagacgt
     9301 gggaagatag gcgtgccttt tgcgactacg gtcaaacctg ctggaagacc tgcaaagtca
     9361 agattttcaa ggtcaaatgc tgttcccaaa ccaagctgtt ccataatagc attagacgtc
     9421 gtcatcatga atggctgaat gaggtgagcc accacacgaa gacctgctgt taagtgagcc
     9481 atgactgctg ccaacttgtc acggtcagct tcttcttttg ccaagaccca aggtgcagtt
     9541 tcatcgatgt acttgttggt acgggagatg atattccaaa cagcttccaa agcgcgtgga
     9601 tagtcaacag cttccatata cttgtggtag cttgccaagt tgtcagccac tactgccgcc
     9661 aagtccgcat caaaatctgt cacgttggca acaaaagttg gtacctgacc accgaaatac
     9721 ttgttaatca tagcaaccgt acggttgagc aagtttccaa ggtcgttggc tagttcgtag
     9781 ttgatacgac caacgtagtc ttctggtgtg aaggttccgt cagagccaac tggaagacta
     9841 cgcatgaggt agtaacgcag tggatccaag ccgaaacgct cgaccagcat ttctggataa
     9901 accacattgc ccttagactt ggacatcttg ccgtccttca tgacaaacca gccatgagca
     9961 accaagcggt ctggcaactt catatccaac atcatgagca tgattggcca gtaaatggag
    10021 tggaagcgaa gaatgtcctt gccaaccatg tgataaactg ttccattcca gaaggtgtca
    10081 tagttggctg tctcttcctg accataaccc aaggccgtcg cgtagttgag cagggcatca
    10141 atccagacat agacaacatg ttttggattg gacggaacag gcacgcccca agtaaatgag
    10201 gtacgggata ctgccaaatc ttccaagcct ggctcgatga agtttttcat gatttcattg
    10261 agacgaccgt ccggctggat aaagtctggg tgagcattga agaactcgac caatttatcc
    10321 tgatacttgc tgaggcggag gaagtatgac tcttctgata cccaggcaac ctcgtgaccg
    10381 ctcggagcga taccgcctgt taccttgccg ttttcatctc ggaagacctc ttctaattgg
    10441 ctctcggtga aaaattcctc gtctgatacg gagtaccatc cagaatactc tcccaagtaa
    10501 atgtcgtctt gcgccagcaa tttttcaaaa acagccgcca ccacttcctc gtggtaatca
    10561 tcagtcgtgc ggataaattt gtcgtaagag atgtccagca agttccagag ctccttgacg
    10621 ccaaccgcca tgccatctac ataagcttgt ggagttaatc cagcctcttt tgccttctcc
    10681 tcaatctttt gaccgtgctc atcaagacct gttaaataat agacatcatg ccccataagg
    10741 cgtttgtaac gagccaatac atcacaggca atggtcgtgt aagctgaacc gatatgaagt
    10801 tttccagacg gataataaat cggtgtggtg atataaaacg gtgtttttgt catgcttttt
    10861 ttcctttcaa attcagagca aatgaaaccc tgttattgac aatacttcat tttatcatat
    10921 tttcagctaa atcacaaaat ggttctaact acaattcttc ctctatctat gctatactat
    10981 gatacaactc aaacagaaag aggtcatcta tgtttacaaa gaaaaatatt cttactcatc
    11041 tctttttcct catcatagca gtcggactaa aacggtacga tgtcacagca cctgacttga
    11101 catggaatat gttcttggca ttggtagcac ttgattttgc aatccttacc aatcatacaa
    11161 agtcccatat cctcaaagtg atagcaggtc tcctctggct ctttttctac cccaatactt
    11221 tttacatggt gacagacatc gtccatatgc actttgccaa cacagtacta tggcaacgag
    11281 aaagcatgat tctatttatg ctttatgttc caagtatttt ctttggggtc atggctggcg
    11341 ttgaaagtgt acgacttatt ttctctgctt tttctatcaa atcctactgg ctaaaactgt
    11401 ttatgattag tggtctttcc ctactatcca gctttgccat tcatatcgga cgatatgcaa
    11461 gactgaattc atgggacatc tttaccagac caactgtcgt tattgatgaa atgcttgcag
    11521 ttatttcgtg ggatgccttc ccctttatcc tcggcttcac ctttatccaa attatggttc
    11581 ttgtcttttc aataaatgaa taagattttt atctcatagc cattatcttc aagcatcttc
    11641 ctgcactcaa ggactatcgt tccttttggg aagatttttc aaggacataa acaaaatttt
    11701 ttgataaatt tatatcttcc ccgtttctct ccattacatt tttatccaaa ctgtatgagg
    11761 caaaaatcgt taacctattg taagtaaaac ttcttaaatt tcctttatat aaaatattca
    11821 gaatttactg taaattctac ataaaatcat ggatattgat tttaaattct taaaaataat
    11881 ggtataattg aggaacctat aaatgaaaga gggagatcta ttgtttacac caatcagcga
    11941 aaaaattgac atcaatcaag tacgagaaca ttcaaaactt tctccagaaa cacttgctaa
    12001 aaaacaagct cgtgaccgtg aacttgaagc tatcttaaaa ggtgaagatg atcgtcttct
    12061 cctagtaatt ggaccgtgtt cttctgacaa tgaagaggct gtcttagatt atgctcaccg
    12121 cttggccaaa ctccaagaag aggtcaaaga taaaattttc atggtcatgc gcgtctatac
    12181 tgccaagcca cgtaccaatg gtgatggtta taaaggactc atgcaccaac cagatacaga
    12241 tgctgcacca agcctcatca acggaatcaa agcagttcgt aacctccact atcgtatcat
    12301 tacggaaaca ggtttaacta ctgctgacga gatgctctac cctgaaaacc tgcctttggt
    12361 tgatgacttg gtttcctaca tcgctatcgg agctcgttcg gttgaaaatc agcagcaccg
    12421 ctttgtagcg tcaggcatcg atgttccaac aggcttgaaa aatccaacgt ctggtaacct
    12481 caaagtcatg ttcaacggtc tttttgctgc tcagaagaaa caatccttcc tcttcaacaa
    12541 tactgaagtt gaaacatctg gcaatccact tgctcacgtt attcttcgtg gcgcagtcaa
    12601 tgaaaatggt aaataccttc caaactatta ctatgacaat cttctagaaa ccattgagct
    12661 ctatgaccaa tttggcttga aaaatccatt tattattatc gataccaacc atgacaattc
    12721 tgggaaaaat tatttggaac aaatccgtat catccgtcaa accttaatca accgtgactg
    12781 gaacgaatcc attcgtaact acgttcgcgg attcatgatt gaatcctaca ttgaagacgg
    12841 tcgccaagac aatccagatg tctatggaaa atccatcaca gacccttgct taggctggga
    12901 aaaaacacat gaactcatcc gagaaattta caacagatag gaagatatta tgggaattca
    12961 caaacgtagc accagtttag acatcgataa agtaaaggaa ctttccaagt tagaaggaga
    13021 atttctagct gcaaaaaatc agcgcgatga agaactgaaa agaattatcc gaggcgaaga
    13081 tgaccgtctg ctcttggtta tcggaccttg ctcatcagat aatgaggagg ccgttctaga
    13141 atatgcacgt cgtctctcta agcttcaaga ggaagtcaaa gataaaatct tcatggtcat
    13201 gcgggtttac acagctaagc cacgtaccaa tggggaaggc tataaaggac tggttcatca
    13261 gccagatact tctaaattac cagacctcat taacggaatt gcagccgtgc gcaatttgca
    13321 ttaccgtgtc attactgaga ccggactcac aactgctgat gaaatgctct actctgccaa
    13381 ctaccctctt gtggaagact tggtgtccta ccatgctatc ggagcacgtt cggttgaaga
    13441 ccaagaacat agatttgttg catcaggtgt cgatatgcca actggtatga aaaacccaac
    13501 ttctggtaat ttgaccgtta tgttcaatgg tatctacgcc gcacaaaaca aacagaactt
    13561 tatttaccgt gatgcagaag ttgatacaga tggcaaccct ctagctcatg ctatccttcg
    13621 tggtgccaat actgaaaagg gcggttatga gccaaactac tactatgata ttctcttgaa
    13681 aaccatcaaa cagtatgaac aatttggtct taaaaatcca tttatcgtaa ttgataccaa
    13741 ccatgataat tctggtaaaa attacctgga acaaatccgt atcgtccggc aaaccctcat
    13801 caaccgtgat tggaatgaag ccattcgcaa atatgttcgt ggtttcatga ttgaatccta
    13861 cttagaagac ggccgtcaag atagccctga ggtattcggc aaatccatta ccgatccttg
    13921 cttaggttgg gaaaaaacgg aagctctgat tcgtgaaatt catcaaaccg tctaattctt
    13981 cccttaattt tttatacgat aaataatttg gaggtaagct atgaacattg atggttacac
    14041 tcgtcttgct gccgttgttg caaagccaat caaacactcc atttccccct tcattcataa
    14101 tctggctttt aaggaaacag gtgtaaatgg tgtctatgtc gcttgggaaa ttcccgagga
    14161 agatgtggct gtaacgcttg aaaatatcaa acgatatgat atgtttggta tcaacctgtc
    14221 catgccctat aagcaggctg tcatccctta tctcgatagc ctgactgact ctgctcgctt
    14281 gattggcgct gtcaataccg tgattcataa agatggaaaa ctaatcggtc acaacaccga
    14341 tggaattgga tttttcaaga gtttggaaag actaaaaggc tttcaagtta agaacaagcg
    14401 actaaccatc ctaggtggtg gtggtgcttc tactgctatc atagctcagg ctacattgga
    14461 tggtgcaaag gaaattacca ttttctgccg tcaacaaagc ttggaaagaa cacagacgag
    14521 tcttacacct attgctcaag caactggagt tcccatacag gtcctagcgc ttgaagatag
    14581 ccaattacta caggaacata tcaccaactc cgacttacta gtcaacggaa ccagtgtagg
    14641 catggatggg tattctcaac ctgttccgtc taccattcgc tttcccgaaa atcttttggt
    14701 tgcggatgtg atttatcaac cattcgaaac acctttaatg aagcatgccc agtcacaagg
    14761 caaccctact attaacggtt tgggcatgct ccttttccaa gcggctgaag cattccaagc
    14821 ctggactggt aaggaaatgc cgactgactt gatttgggac caattagtcc agaaatacga
    14881 catcaatata gagaggaaat ctgatgaaac tgaccgtcaa tcttcccaac actccctacg
    14941 acatccttat ccaaagagga agtttagcac agacaggtgc atgggtcaaa gaactttgga
    15001 aacctcagaa aatcgccatt atcacagatg accacgtcgg ctcactctat gctgaaacag
    15061 tacagtctag tctggaagcg gctggatttg aatccattgt ctttgcattt ccagaaggcg
    15121 aagcttcaaa aaatcttgac actgtcaatc aagcctacga atttctcgta cagcatggca
    15181 tgacccgaag tgacggcatt atcgccctcg gcggcggtgt cgttggtgat ttggcaggct
    15241 ttgtttcatc aacctacatg cgtggcattc attttctaca aattccaacc agcttgacag
    15301 cccaggttga ttcctctatc ggtggaaaaa ctggcgtcaa taccccattt gctaagaaca
    15361 tgataggtac cttctgccag cctgacggcg tattaattga ccctgacacc ctcaaaaccc
    15421 ttggcaaacg agaattgatc gaaggaatgg gcgaggtcgt caaatatggt ctaatcgatg
    15481 accttgaact ctgggaaaaa ttagaacatt tagacggctc tgtcgagagc attctggagc
    15541 atgctgacta tatcatctac cactcctgtg aagtcaaacg caaggttgtt gtcgaagatg
    15601 aattagacaa cggtgtcaga ctctacctca acttcggtca cacgattgga catgctattg
    15661 aagcgaccgc tggctacggc caagtcatgc acggtgaagc tgttgccatt ggtatggtac
    15721 aaatctcacg cgcagctgag aaaaaaggac tgatgccagc gggtatgaca gaaaagatta
    15781 tcgccatgtg tgaaaaattc ggcttgccga ctacacatca gccttggaat gtagatgaat
    15841 tatacgccgc cctatctcac gataaaaaag cacgtggcaa gaccatcaaa cttgtcatcg
    15901 ttcctcaatt gggacaggct gccatccatc aaattccaat ggaagaaatg ctagaatttc
    15961 tacaagtata gtcatttagt tgacttttac gtcgaagtaa taaaagtcaa
//
LOCUS       DASFRC010000040        15955 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.040, whole genome shotgun sequence.
ACCESSION   DASFRC010000040 DASFRC010000000
VERSION     DASFRC010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 15955)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15955)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15955
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.040"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..1479)
                     /locus_tag="U1087_000872"
     CDS             complement(<1..1479)
                     /locus_tag="U1087_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
                     /protein_id="HEM4755369.1"
                     /translation="MKQASYPIQGMTCASCAMTVEKAVGKLAGMEEVSVNLATEKLSV
                     SYDEKILGLEDIRQAVEKAGYQLVDNLVTESYDISGMTCASCAMTVEKALGKLEGVEE
                     VSVNLATEKATIRYSRHKQNPASLERAVEQAGYQLIRPEEVEEAADEGPSKEEKLWHR
                     FVWSAAFTLPLLYIAMGPMLPWGGLPLPALLHQPLVYAISQVILLIPILYIGRSFFQK
                     GFKTLLQGHPNMDSLIAVGTGAALVQGLLMIAFLLMGKEVAMHGHHPELYFESAAVIL
                     TLITLGKYFEARAKGQTSEAIKKLMDLAPKTAQVLRNGQEIQVPIEEVVVGDQVIVRP
                     GQQIPVDGQVLEGQTRVDESMLTGESLPVKKALGDNVFGGTLNQQGAITMQATKVGRD
                     TTLAQIIRLVEEAQGSKAPIAKLADQVSAIFVPVVMGLALFSGLAWYFLGQESWIFSL
                     SIIIAVLVIACPCALGLATPTAIMVGTGKGAENGLLFKSGQAI"
     gene            complement(1600..3483)
                     /locus_tag="U1087_000873"
     CDS             complement(1600..3483)
                     /locus_tag="U1087_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C69 family dipeptidase"
                     /protein_id="HEM4755370.1"
                     /translation="MKKTFVRIATLLMLVCLFPAQLVQACSGFIIGKGLTTDGSILYG
                     RTEDYPYPPDNGAHNKNYIVVPAASYAEGDMLVDETFGFTAPHLANEFKYTSTPDAAR
                     GDGSNGNYGAHGFNEKGVSMTATVTAIPNAKVLAVDPLVEAGGLGEPILIDYVLPRVT
                     SAREGVELIAKTINEKGSAEGNIVIIADKNEVWYMEILSGHQYVAIKFPEDKYAIFAN
                     TYYLGHVDFTDTENVIASAKVEEVAKQADNYVTVDGQFHIAKSYGPATYAEADRSRVY
                     AGIKLMDPASPVTYEDAVYDLLRQPTDPSRRFSLQDTFALQRNRFEHLPEFRPDDEAG
                     KVKQGDNGANDQAADATYKYALGNENVIDAHVYQINSSLPSAFGGTVWLGLAQTRNTP
                     YVPFYGIVTDTYEAFKNRSASYDTNSWYWTVQNIDKMAISHPELFGTSIQEKWIALES
                     EWIAAQAALDAQYAGLSEDAAVTLAPAVTEETLARSAEIFAQLKAVEAEMMAKIEAAT
                     TPSSSSTDSSSSTEPSTSTEPSTSTEPSSSGTENSTSTSTSTSSSTSQSTSASDTGGA
                     TDTSSSSGTVVSSDKKVTPTNKKGKSSLPSTGEQVSLLLVALGVAGILTAIFLHRKKS
                     SKE"
     gene            complement(3572..4432)
                     /gene="tehB"
                     /locus_tag="U1087_000874"
     CDS             complement(3572..4432)
                     /gene="tehB"
                     /locus_tag="U1087_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase TehB"
                     /protein_id="HEM4755371.1"
                     /translation="MTVLVPYKRMPIWNQDTVPQHFLTKHNTKVGTWAKIKVLKGQLK
                     FEPISDDNEILGEYVYGPTDEIPFVEPQAWHRVTLLTEDTEFFLEFFCQPEDYFAKKY
                     DYTRTHSEVLEALKIIEPCKVLDLGCGHGRNSLYLAQQGFEVTAVDKDVPSIRTLLQV
                     KELEDLDLQAGTYDINSASLEQDYDWIISTVVFMFLERDRVPAIIRNMQEQTRPGGYN
                     LIVAAMDTEDAPCPMNFSFTFGAGELKEYYRDWELVKYNEDFGQLHKRDENGNFLKMR
                     FATMLARKNV"
     gene            4586..5629
                     /locus_tag="U1087_000875"
     CDS             4586..5629
                     /locus_tag="U1087_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEM4755372.1"
                     /translation="MKAAIYEKAGKMTVAEVEKPSLQAKDDVIIKVVRACVCGSDLWG
                     YGEDIHHDHGDTNSGHEAIGIVEEVGEDITTLVPGDFVIVPFTHGCGHCDACRAGFDG
                     TCDNHPGYTNWGNNYQSQYIRFHYGNWALVKIPGQPSDYSEGMIKSLLTLADVMPTGY
                     HAARVADVKPGDKVVVIGDGAVGQCAVIAAKMRGASQIIMMSRHADRQQMALESGATA
                     IVAERGEEGIAKVREILGGGADAALECAGTEASIDQALGVLHNGGRIGFVGVPHYNNH
                     ALGSTFAQNIIIGGGSASVTTYDKEILLDAVLKGDINPGRVFTQTYSLDNIDQAYKDM
                     ANRKTIKAMVTVD"
     gene            complement(5749..6606)
                     /locus_tag="U1087_000876"
     CDS             complement(5749..6606)
                     /locus_tag="U1087_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4755373.1"
                     /translation="MIEVKDISKSFKENMVLDSITMTASDGEITSIIGSNGAGKSTLI
                     AIIMGYYFSDRGTVQSGNVSVMPDANAMFEDVTGLEFLNFISDLKNVPREEAVKYAEI
                     LGIKDDLQKKIQGYSFGMRKKISFIQAAIGNFQNYIFDEPTSGVDGPSAQKMLEIILT
                     LKKNGAAILLTSHNLEELERVSDYIYVLEDGKITREGTVIDITSRTCLTEKDSWIEYI
                     LRVRNIDLLQSKLTEYFPEQIDSETLLIKLSKGDTIYSVFQTLQEVSEYIDEFYLYRR
                     SLRDIIYGQ"
     gene            complement(6608..7291)
                     /locus_tag="U1087_000877"
     CDS             complement(6608..7291)
                     /locus_tag="U1087_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755374.1"
                     /translation="MASLFLFYMKRDLKSFKTAIVSAVYFFITYLFIRYGDSVGRIFD
                     NSDGIAILKVMYAVFAFVGFLFGASLFSNIISQGISSRDFRFILPYQSRRALYFSKFL
                     MSFVFFLLQILISTIVVLVFRKDAVFSFQQFCNISIFYFYMLSIITLISTISKNDRTA
                     MLVNIIISIIYPTIFVFSNFVNHDFLELLLWITPYHYIEKTWEVLFLMLLSVVFLGIG
                     VSVFEKKEI"
     gene            7496..7648
                     /locus_tag="U1087_000878"
     CDS             7496..7648
                     /locus_tag="U1087_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aureocin A53 family class IId bacteriocin"
                     /protein_id="HEM4755375.1"
                     /translation="MKALLNWLFKVLKAAYYWAKNNWKTVQKWLDIGMYFEWILSKIK
                     QILGIK"
     gene            7752..8189
                     /locus_tag="U1087_000879"
     CDS             7752..8189
                     /locus_tag="U1087_000879"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755376.1"
                     /translation="MEKKIISHSNNYLYHEFLLSIFYTMLSIFVSLAVSIFWNITWYH
                     YVLVFICSISCINLIREFFLNKTWYITVEKNKIICSYGTILKIEKVVLLSKVYSFEIK
                     ENFLSSKLDCYNIALKTLDSEFEIKGIAHGDLQAIVQHIENLS"
     gene            8189..9517
                     /locus_tag="U1087_000880"
     CDS             8189..9517
                     /locus_tag="U1087_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HEM4755377.1"
                     /translation="MKKILLLLKYIYDFTKAMIANYSFLLFFNNELATKFFIFSTIIS
                     ASFLIYRIIYYSNYFNFEFTTNYLIVKKGIFLKKIYKVRYSKILGYEFHQNLLFRFFQ
                     IYQVQIFFPDTGDNKSITLPILNNEEKNYLSNKLLITDEETSNNEPNVDNLYPVIPLP
                     IYKIVLSAFISSNYLYIYTIYWTISEILQYLDIHFDKYLFIFYYSNPLYVSFFILIII
                     LSLTSIAKQIWDYINFKVYNTEHSLIISNGIFQKNLIEINKIDISYLVLKQSLGQAVF
                     KICSLHAGIFNVKSDSKNKINTLFPHQSINNFSNDLLNILPTFDIEDLPIKKLLKFPV
                     YEVVCSLVPLIFIYTIVQLHFSIISFATEIIMYIFYTFLLECKFAKFEERENYIIIKR
                     GLLLKKIFITDKSHLEWEIKYQFYNYLTIRKLGIKLQKFKKLYFLMLKNK"
     gene            complement(9608..10075)
                     /gene="smpB"
                     /locus_tag="U1087_000881"
     CDS             complement(9608..10075)
                     /gene="smpB"
                     /locus_tag="U1087_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HEM4755378.1"
                     /translation="MAKGEGNVIAQNKKARHDYTIVDTVEAGMVLTGTEIKSIRAGRI
                     NLKDGFAQIKQGEAWLVNVHIAPYDEGNIWNQEPTRTRKLLLRKKQIESLGNEVKGTG
                     MTLVPLKVYIKDGFAKVLIGLAKGKHDYDKRESIKRREQDRDIKRTMKAINAR"
     gene            complement(10078..12447)
                     /gene="rnr"
                     /locus_tag="U1087_000882"
     CDS             complement(10078..12447)
                     /gene="rnr"
                     /locus_tag="U1087_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HEM4755379.1"
                     /translation="MKNEIINYIKEVGPVTMDQLADQLGASSAKSFTDLVKLVSSMEG
                     SRQLVFDNAGRIALPAPKVSKNKVTLQGIFRAHKSGFGFVTIDEEEDDLFVSRDDVNF
                     AIEGDRVEIAIKKVADRLKGTAAEAEVIDILEHSLRTAVGLIVFDEDKPEYAGYIKSK
                     NQKIAQKIYIKKSPLVLTGTEILKVDIEAYPNKKRDHFVATIRDVVGHKDDVGIDVLE
                     VLESMDIVSKFPDEVLAEADRVPESPSEQDFAGRLDLRDEIIFTIDGADAKDLDDAVH
                     IKQLKNGNLELGVHIADVSYYVTEGSALDQEAVKRGTSVYVTDRVVPMLPERLSNGIC
                     SLNPNVDRLTQSAIMEIDRKGKVVKHWIGQTVIKTTFRMTYSDVNDMIAGNQEKLAKY
                     KAIVPSVELMVKLHETLESMRYKRGALNFDTTEAKIIVNKDGLPVDIQLRQRGIAERM
                     IESFMLAANECVAEHFAKLDLPFIYRIHEEPKSDKLQKFIDYATSFGLTVYGTASSIS
                     QDALQDLMERVKDEPYADVLNMMLLRSMQQARYSEHNHGHYGLGAEFYTHFTSPIRRY
                     PDLLVHRMVREYGHNPAEKAEHFEQVIPELAKSSSSLERRAIEAEREVEAMKKAEFMQ
                     EFVGQEFDGVVSSVVKFGLFVELPNTVEGLIHITNLNEYYQFHERTLTLQGEKSGRVF
                     RVGQPIRIKLTRADKMTGEIDFAHVPSELDIVEKALKAKRRTTSHSNRDRDDRSGRGR
                     GKHHKQEAASRDSGRHKSGKDHKSKSGKKDKKKKPFYKEVAKKNKKKRR"
     gene            complement(12879..13112)
                     /gene="secG"
                     /locus_tag="U1087_000883"
     CDS             complement(12879..13112)
                     /gene="secG"
                     /locus_tag="U1087_000883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018374825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HEM4755380.1"
                     /translation="MYQALLAILLILSVILIVVIFIQPAKNQSSNVFDSSSGALFERT
                     KARGFEAVMQRITAILVFLWMLDALALVIISSK"
     gene            complement(13159..13308)
                     /gene="rpmG"
                     /locus_tag="U1087_000884"
     CDS             complement(13159..13308)
                     /gene="rpmG"
                     /locus_tag="U1087_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008809064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEM4755381.1"
                     /translation="MRVKINLQCSECGSKNYLTSKNAKTHPDKIEVLKYCPKERKVTL
                     HLETK"
     gene            complement(13308..14513)
                     /locus_tag="U1087_000885"
     CDS             complement(13308..14513)
                     /locus_tag="U1087_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter"
                     /protein_id="HEM4755382.1"
                     /translation="MDDGSSYWKQNLKVAWLGNFLTGTSFTLVMPFISVFVEELGVGP
                     GQVEYYAGLAVSANAFAAAVMAPIWGSLADRYGRKPMMVRAAFAMIFTMGGMAFVPNV
                     FWLLALRVLNGVFTGYIPNATALIASQVPKDKTGYALGTLSTGAVAGNLIGPTLGGIL
                     AEMFGVHTVFLLVGLLYAIVVLLTVFYIREDFVPIKKGEEMSVKEVFEQVKDRQMLVG
                     LFVTSMIIIAAAQAVVPILTLYVRHLGQTDNLLFVAGFIISLPGMASLVTSGYLGKIG
                     DRIGNHRLLLIALTYSLLINVFCVFAENPFQLGLLRFMYGFGTGVLLPSVNSLLTKLT
                     PKEGISRIFSYNQLFNNLGSVVGPMMGSAVAAHMGYDWVFYLSSGLVLFNLIWSLTNF
                     RNYLKVRDV"
     gene            complement(14500..15102)
                     /locus_tag="U1087_000886"
     CDS             complement(14500..15102)
                     /locus_tag="U1087_000886"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HEM4755383.1"
                     /translation="MVKIIGLTGGIASGKSTVTAFLREQGYSVIDADAVVHELQAKGG
                     KLYQILLKEFGQDILSDDGNLDRFKLGQAVFADSNLRARLSDLQDQIIRHELLARRDA
                     LKQTEDVIFMDIPLLYEADYSGEVDEVWLVYVDRAQQLERLMKRNGLAVQDAENRLAA
                     QLSLEEKRSQAQVVIDNSGAVEATLAQVAQLLEELKDGRR"
     gene            complement(15095..15922)
                     /gene="mutM"
                     /locus_tag="U1087_000887"
     CDS             complement(15095..15922)
                     /gene="mutM"
                     /locus_tag="U1087_000887"
                     /EC_number="3.2.2.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase"
                     /protein_id="HEM4755384.1"
                     /translation="MPELPEVETVRRGLNRLVKGKVIEKVKVTYAAMIKTGVDAFCQD
                     LLGQEILDVDRRGKYLLIYLTDHVLISHLRMEGKYNFFPDQVPANKHFHAFFTFTDES
                     TLVYQDVRKFGTMELLGKADVDAYFISRKIGPEPTEEDFDLEEFAKKLAKSKKPIKSH
                     LLDQSLVAGLGNIYVDEVLFRAQVHPAQASNQLSAEQVTSLRQATIEVLQLGIEKGGS
                     TIRTYKNALGMDGTMQDYLQVYGKTGQACLRCQTEIVKIQLGGRGTHFCPTCQVKHG"
BASE COUNT         4713 a         3705 c         2953 g         4584 t
ORIGIN      
        1 aatagcttga ccagacttga acagtagacc attttccgcc ccttttccag tcccaaccat
       61 gatggcagtc ggcgttgcta agcccagagc acaagggcag gcgatgacca agacggcgat
      121 gatgatgctt aatgaaaaaa tccatgattc ttgacccaag aagtaccagg ccagaccgga
      181 aaaaagagcc aagcccatga cgactggtac aaatatggca gatacttggt cagccaattt
      241 ggcgatggga gccttagacc cttgagcctc ttctaccaag cgaataatct gggccagagt
      301 cgtatcacga ccaaccttgg tagcctgcat ggtaatggcg ccttgctggt taagggtgcc
      361 gccaaaaaca ttatcgccta gagctttctt cactggcagg ctctcacccg tcagcataga
      421 ctcatccaca cgtgtctgac cttcgagaac ctgaccatca acaggaatct gctgacctgg
      481 acgaacaatg acctggtcac cgaccaccac ttcttcaatc ggcacttgta tttcctgacc
      541 atttcgcaag acctgagccg tcttgggagc cagatccatc aatttcttaa tggcctcaga
      601 agtctgacct ttggctctag cttcaaaata ttttcctagg gtaatcaagg tcaagataac
      661 ggcggctgat tcaaaataca gttctggatg gtgaccgtgc atggccactt ctttccccat
      721 cagaagaaac gcaatcatca aaagaccttg aaccaaggct gcccctgtcc caacagcaat
      781 caaggaatcc atattgggat ggccttgcaa gagagtttta aagccttttt ggaaaaaact
      841 gcgtccgata tagaggatag ggatgagcaa gatgacttgg ctgatcgcat agactagtgg
      901 ttggtggagc aaagctggta atggaagccc accccaaggc aacataggcc ccatagcaat
      961 atagagcagt ggaagagtaa atgctgctga ccagacaaat cgatgccaca gcttttcttc
     1021 cttgctcggt ccctcgtccg cagcctcttc tacttcttct ggtcgaatca gctgataacc
     1081 tgcctgctca actgctcttt caagactagc tggattttgc ttatgacggc tataacggat
     1141 agtcgccttt tctgttgcca gattgacaga gacttcttct acaccctcta gttttcccag
     1201 agctttttca accgtcatgg cacaggaagc acaggtcatg cctgaaatgt cataagactc
     1261 ggtcaccaaa ttatcgacca actgataccc cgccttttca actgcctgac gaatatcctc
     1321 tagtcccaaa atcttttcat catagctaac actcaatttt tcagtcgcta ggttgacact
     1381 gacttcttcc attcctgcta atttgccaac cgctttctca accgtcatag cacaggaagc
     1441 gcaggtcata ccttgaatgg gatagcttgc ttgtttcata ggttactcct tttccgacta
     1501 catctgtaaa caaattatac aatatacgac tacatttgta aacaaagttg tttcaaaaaa
     1561 gtagattgaa atcaatccaa cctactttta catattcatt tattctttac tggacttttt
     1621 tcgatgaaga aaaattgctg ttaaaattcc tgcaacacct agcgccacca acaagaggct
     1681 gacttgctca cctgtactag gaagacttga tttacctttt ttattggtag gtgttacttt
     1741 cttatcagaa gacactactg ttccgctgga ggaggaagta tccgtagctc ctcctgtgtc
     1801 agaagcactt gtagactgac ttgtactgct tgaagtactg gttgaagtac tggttgagtt
     1861 ttcggtacca cttgatgatg gctcagtgct ggtcgatggt tcagtactag tggatggttc
     1921 agtactactt gatgagtcgg tgctgctgga tgacggagtt gttgctgctt caatttttgc
     1981 catcatttca gcttcaacag cttttagttg ggcaaaaatc tctgccgaac gagccaaggt
     2041 ttcctcggtt acagctggag ccagggttac agctgcatct tctgaaagtc cagcatattg
     2101 agcatcaaga gcagcctgtg cagcaatcca ttcactttca agagcaatcc atttttcttg
     2161 aatcgatgta ccaaataact ctgggtgtga gatggccatc ttatcaatat tttgtaccgt
     2221 ccagtaccat gaattcgtgt cgtaagaagc tgagcgattt ttaaaggctt cataagtatc
     2281 cgtcacaata ccataaaatg gaacatacgg tgtattcctt gtctgagcca agcccaacca
     2341 cactgtgcca ccgaaggctg atggtaagct gctattgatc tgataaacat gggcatcgat
     2401 gacgttttca ttaccaagag cgtatttata agtcgcatct gccgcttggt cattcgcacc
     2461 attatcccct tgttttacct tgcctgcttc atcgtctgga cgaaattctg gaagatgttc
     2521 aaaacggtta cgttgtaagg caaaggtatc ttgtaaacta aagcgacgac ttggatctgt
     2581 tggctgacgt agcaaatcat acacagcatc ttcataggtt acaggcgatg ctggatccat
     2641 caatttaata cctgcataca cacgggaacg gtctgcttca gcataagttg caggaccgta
     2701 tgatttagcg atatggaact gcccatcgac tgtcacataa ttatccgctt gtttggctac
     2761 ttcttcaacc tttgcagaag caatcacatt ttctgtatcg gtaaaatcga catgacctag
     2821 atagtaagta tttgcaaaaa ttgcatactt atcttcaggg aacttgatgg ctacgtattg
     2881 gtgtcctgac aaaatttcca tgtaccaaac ttcatttttg tcagcaataa taacaatatt
     2941 cccttctgct gagccttttt cattgattgt ctttgcaatc agctcaacac cttcacgcgc
     3001 actagtgacc ctaggaagaa cataatcaat caaaattggc tctcccagcc ctccagcttc
     3061 aactagagga tcaactgcca agactttagc atttggaata gctgttacag tagcagtcat
     3121 ggatacgcct ttttcattaa aaccatgcgc cccataatta ccatttgaac catccccacg
     3181 cgccgcatca ggcgtagagg tgtacttgaa ctcatttgcc aagtgtggtg ctgtaaaacc
     3241 aaatgtttca tccaccaaca tatctccctc agcatagctt gctgctggaa ccacaatata
     3301 atttttattg tgcgcaccat tatctggtgg atagggataa tcttccgttc taccataaag
     3361 gatagaacca tccgttgtca accctttccc aatgataaag cctgaacagg cttgaacaag
     3421 ttgggcgggg aataggcaaa ccaacattag taatgtggct atacgaacaa aagtcttttt
     3481 catagacttc tcctttcata taataaaata cccatttgca catatattgt atcgcaaaag
     3541 cacctgcctt gcaagtgctt tcagatatat tttacacatt ttttctagcc aacatagtcg
     3601 caaaccgcat tttgaggaaa ttaccatttt catcccgctt atgaagttga ccaaaatctt
     3661 cattgtattt gaccagttcc cagtcacggt agtattcctt caactcacct gctccaaaag
     3721 taaaggagaa attcataggg cagggggcat cttccgtatc catggccgcc acaatcaagt
     3781 tatagccacc aggtcgtgtc tgctcctgca tattgcggat aatggctggc acccgatccc
     3841 gctccaagaa cataaagacc actgttgaga taatccagtc gtaatcctgc tccagactag
     3901 ctgagttaat atcgtaagtc ccagcctgca agtccaagtc ctccaattcc ttgacctgca
     3961 agagtgtccg aatacttggc acatccttat caactgccgt cacctcaaat ccctgctgag
     4021 ccaagtaaag actgttacga ccatgaccac agcccaagtc caagacctta caaggctcga
     4081 tgattttcaa ggcctccaag acttccgaat gcgtccgcgt gtagtcgtac tttttagcaa
     4141 aataatcctc tggctgacag aaaaattcca agaaaaactc cgtatcctct gtcaacaagg
     4201 tcactcgatg ccaagcctgt ggctctacaa agggaatctc atctgtcgga ccatagacat
     4261 attctcccaa aatctcatta tcatctgaaa tcggctcaaa tttgagctga cctttcaaga
     4321 ctttgatttt ggcccaagta cccaccttgg tattgtgctt ggtcaaaaaa tgctggggaa
     4381 ccgtatcctg attccaaatg ggcatgcgtt tgtaaggaac taaaaccgtc attatctctc
     4441 cttttctttc cgatacactt agtctatcac aaaggaaata tgaattcaaa cacatttttt
     4501 tcttgacttg gagtgaactc caaggtgtat aatattcata tcaatttaga aaggatattt
     4561 actgacaagt aagtatggga tgaatatgaa agcagctatt tatgaaaaag ccggtaagat
     4621 gaccgttgct gaagtcgaaa aaccaagcct tcaagccaaa gatgatgtca ttatcaaggt
     4681 cgttcgggcc tgtgtctgtg ggtcggacct ttggggctac ggagaagaca ttcaccatga
     4741 ccacggtgac acaaactctg gtcatgaagc catcggtatc gttgaagagg taggcgaaga
     4801 catcacaaca cttgttcctg gtgactttgt gattgttcca tttacacatg gttgcggaca
     4861 ctgtgatgcc tgtcgtgctg gctttgacgg tacttgtgac aaccatccag gctacaccaa
     4921 ctggggcaac aactaccagt ctcaatacat tcgtttccac tacggcaact gggccttggt
     4981 caaaattcct ggtcagccaa gtgactactc agaaggcatg atcaaatctc tcttgactct
     5041 ggcagatgtt atgccaactg gctaccacgc agcccgcgta gcagatgtca aacctggtga
     5101 caaggtcgtc gtcatcggtg atggtgcagt ggggcaatgt gccgttatcg ctgccaaaat
     5161 gcgcggagct tctcagatta tcatgatgag ccgtcacgca gaccgccagc aaatggctct
     5221 ggaatcaggg gctactgcca tcgtagcaga acgtggcgag gaaggaattg ccaaagtccg
     5281 tgaaattcta ggtggcggag ctgacgccgc ccttgaatgt gccggaacag aagcctcaat
     5341 tgaccaagcc ctcggcgtgc ttcacaatgg cggtcgtatc ggttttgtag gtgtgccaca
     5401 ctacaacaac cacgcccttg gctcaacctt tgctcaaaat atcattatcg gtggtggctc
     5461 tgcttctgtc acaacctatg ataaggaaat tttgctcgat gccgttctca aaggcgacat
     5521 caacccaggt cgagttttca cccaaactta cagtctggac aatatcgacc aagcctacaa
     5581 agacatggcc aaccgcaaaa cgattaaagc aatggtgacg gtggattaag ataaataata
     5641 agccccagat agtctcgtaa ctgtctgggg tatttgtttt ccgataacaa aaaagaccag
     5701 gatttctccc agtcttagcg actattgatc gccttcgtac gtttgggctc attgcccata
     5761 tataatatct ctcaatgacc ttctatagag gtaaaactcg tcaatgtact ctgatacttc
     5821 ttgtaatgtt tgaaaaacag aataaatcgt gtcgcctttt gaaagtttaa tcaaaagagt
     5881 ttctgaatca atttgctctg gaaaatactc tgtcaacttc gattgtaaaa gatcaatgtt
     5941 tctaacccta aggatatact ctatccaaga atctttctct gtcaaacacg ttctagaagt
     6001 aatgtctata acagttcctt ctcttgtaat cttgccatct tccaatacat aaatataatc
     6061 agaaactctc tctaattctt ctaaattgtg cgatgttaat aagattgccg caccattctt
     6121 tttcaatgtc agaataatct ctaacatctt ttgagcagat ggaccatcta ctcctgatgt
     6181 tggctcatca aaaatatagt tttggaaatt tccgatagca gcttgtatga agctaatctt
     6241 ctttctcatt ccaaatgaat agccttgaat cttcttttgt aaatcatctt tgattcctag
     6301 tatttcagca tattttacag cttcttccct aggaacgttt ttcaagtctg atataaagtt
     6361 taaaaattca agacctgtaa catcctcaaa catagcgttt gcatctggca tcacagagac
     6421 atttccagac tgaactgttc ctctatctga aaaataataa cccattataa ttgctattaa
     6481 agtggacttc cctgctccat tactaccaat gatagatgtg atttctccat ctgatgcagt
     6541 catagttatg ctgtccaaaa ccatgttttc cttaaatgat ttggaaatgt ccttcacttc
     6601 aatcatctta tatctccttc ttctcaaaaa ctgaaacccc tatacctaaa aaaacaactg
     6661 acaagagcat taaaaataga acttcccatg ttttttcaat ataatgatag ggagtaatcc
     6721 ataacaacag ttccaaaaaa tcatgattga caaagttaga aaacacaaaa atagtagggt
     6781 aaataatact aataatgatg ttcactagca tagctgttcg atcattttta ctaatagtag
     6841 atatcaaggt gataatcgaa agcatataga agtaaaaaat actaatatta caaaactgtt
     6901 ggaaagaaaa aactgcatct tttcgaaaca caagtacaac tatggttgaa atcaaaattt
     6961 gtaaaaggaa aaacacaaag gacattaaaa actttgaaaa atagagtgcc cgccgagatt
     7021 gataaggcaa aataaatcta aaatctcttg atgatatccc ttgagaaata atattagaga
     7081 acagggatgc accgaataga aagccgacaa aagcaaaaac ggcatacatc actttcaaaa
     7141 ttgctattcc atcggaatta tcaaagattc ttccaacact atctccgtat ctaatgaaaa
     7201 gataagtgat gaaaaaatag actgctgaga caatcgctgt tttaaaagat tttaagtctc
     7261 gcttcatgta aaataaaaat agtgaggcca aatttattct cccttcatgt aatacagtct
     7321 attttatcaa aaaaacgaac cactatcaac ttttttcaaa aaatagaagc aaataatatt
     7381 aaaagacgaa cattaggcaa acaaatagat aaatgatacg atttttgttg acaatctttt
     7441 ttctttgttt tataatcaaa ctgtgggtaa cccccacaga aggaggagaa atattatgaa
     7501 agcattatta aattggttgt ttaaagtatt aaaagcagcc tactattggg ctaaaaataa
     7561 ctggaaaact gtccagaaat ggctagatat tgggatgtac tttgaatgga ttctttctaa
     7621 aattaaacag attttaggaa ttaaataacg acattgtcta attttattca tgcaatgtca
     7681 ttaaaataaa actccataaa atatggagtt ttattttaac ttttagatat tataaggact
     7741 gattatcggc tatggagaaa aaaatcattt ctcattcaaa caattatttg taccacgaat
     7801 ttttattgag tatattttat actatgctat ccatttttgt ctcgcttgca gtgtctatat
     7861 tttggaatat cacatggtat cattatgttt tggtgtttat ttgctcaatt tcttgcataa
     7921 atctaataag agaatttttc ctcaataaaa cttggtatat tactgttgaa aaaaataaaa
     7981 taatctgttc ttacggaact atattaaaaa tagaaaaagt ggtactccta tccaaagtat
     8041 acagttttga aataaaagaa aatttcctct ccagtaaact agattgttat aatattgctt
     8101 tgaaaacttt agattctgaa tttgaaatta aaggaatcgc tcatggcgat ttacaggcca
     8161 ttgtacagca tatagaaaac ctgtcttaat gaaaaaaata ttactactac ttaaatacat
     8221 atatgatttc acaaaagcga tgatagctaa ttacagcttt ttgctatttt ttaacaacga
     8281 actagctact aaatttttta ttttttcaac tataataagt gcttcatttt tgatttacag
     8341 aatcatctac tattcgaact attttaattt tgagttcacc acaaattatt taatagtaaa
     8401 aaaaggaatc tttctcaaga aaatatataa agtaagatac tccaagatac ttggttatga
     8461 atttcaccag aatcttcttt ttagattttt tcaaatttat caggttcaaa tttttttccc
     8521 tgataccggt gataataaat caattactct ccccattttg aataacgaag aaaaaaatta
     8581 tttgtccaat aaacttctaa ttactgatga agaaaccagc aacaatgaac caaatgttga
     8641 caatttatac ccagtaattc ctttaccaat ttataaaatt gttctttctg cttttattag
     8701 ctcaaactat ctttacattt atacaattta ttggactatt tctgaaattc ttcaatactt
     8761 agatatccat tttgataaat atttatttat tttttattat tctaacccac tatatgtctc
     8821 cttttttata ttaattataa tactatcact gactagtatt gccaaacaaa tatgggacta
     8881 tatcaatttt aaagtttata atactgaaca ttcattaatc atttcaaacg ggatatttca
     8941 aaaaaatctt atagaaataa ataaaataga tattagctat cttgtcctaa agcagtcttt
     9001 aggacaagca gtttttaaga tttgttcctt acatgctggt atctttaacg ttaaatctga
     9061 ttcaaaaaat aaaattaata ctttattccc ccaccagtct ataaataatt tttctaatga
     9121 tttattaaat atcttgccaa ctttcgatat agaagacctc ccaataaaaa aacttttaaa
     9181 attcccagta tatgaagtag tttgctcgtt agtccctctt atttttatct atacaatcgt
     9241 acaattgcat ttttctatca tttcatttgc aaccgaaata attatgtata ttttttatac
     9301 cttccttctt gaatgtaaat ttgccaaatt tgaagaaaga gaaaactata taataatcaa
     9361 aagaggattg ttgttaaaaa aaattttcat cactgataaa agtcacctag aatgggaaat
     9421 aaagtaccaa ttttataact atttgactat tagaaaattg ggaattaaac tgcaaaaatt
     9481 taaaaagtta tactttttaa tgctaaaaaa taaatagaat tatagacttc ctactatata
     9541 aaaaaaacaa atacagtagt tcattctggc tctattattc aatggattgg atactagcac
     9601 accaaactca tctcgcatta atcgccttca tggtccgctt aatatcacgg tcttgctcac
     9661 ggcgtttaat tgactcccgc ttgtcgtagt cgtgcttccc tttggcaagt ccaatcaaaa
     9721 ccttggcaaa gccatccttg atatagacct tgaggggcac cagggtcatc cctgttccct
     9781 tgacctcatt acccaaggac tcgatttgct tcttccgcaa gagaagtttg cgtgtccgcg
     9841 ttggctcctg gttccagata ttgccctcat cgtagggagc gatatggaca ttgaccaacc
     9901 aagcctcgcc ctgcttgatc tgggcaaagc cgtccttaag gttaatccgc cccgcacgaa
     9961 tagacttaat ctccgtcccc gtcaggacca tccccgcctc cactgtatcg acaatggtat
    10021 agtcgtggcg ggctttttta ttctgtgcaa tcacattgcc ctcacccttg gccatgccta
    10081 tctccttttc ttcttgttct ttttagccac ttctttgtaa aatggtttct ttttcttgtc
    10141 ttttttgcca ctttttgact tgtggtcttt cccagacttg tgacgtccgc tgtcgcgact
    10201 agcagcttct tgcttgtggt gcttacctcg tcctcgccct gaccgatcat cacgatcacg
    10261 gttagagtga ctggtcgttc tccgtttggc tttcagagct ttttccacaa tatccagctc
    10321 ggacggcacg tgggcaaaat caatctcccc tgtcatcttg tccgcccgcg ttagcttgat
    10381 acgaattggc tgaccaacac ggaagacccg acctgatttc tcaccctgca aggtcagagt
    10441 ccgctcgtgg aactggtagt attcgttgag gttggtgata tgaatcagac cttcaaccgt
    10501 atttggcaac tcgacaaaga gaccaaactt gactacgcta gacacgacac catcaaactc
    10561 ttgcccgaca aattcttgca tgaactctgc cttcttcatg gcttcgactt cccgctctgc
    10621 ctcaatggca cggcgttcta aactggacga agacttggca agctcaggaa tgacctgctc
    10681 aaaatgctct gctttttccg caggattgtg accatattcc cgtaccatac ggtgaaccag
    10741 caagtcggga tagcggcgga taggactggt gaagtgggtg taaaactccg cacccagacc
    10801 gtagtggccg tggttgtgct ccgagtagcg tgcctgctgc atggaacgga gcaacatcat
    10861 gttgaggaca tccgcatagg gttcatcctt gacccgctcc atgaggtcct gaagggcgtc
    10921 ctggctgata gagctagccg taccatatac cgtcagacca aagctggtcg catagtcgat
    10981 gaacttctgc agcttgtccg acttgggctc ctcgtggatt cgatagatga aaggcaggtc
    11041 caacttggca aaatgctcag caacgcactc gttggcagcc agcatgaagg actcaatcat
    11101 ccgctcggca atgccccgct gacgcagttg aatatcgact ggtagaccat ccttgttgac
    11161 gatgattttg gcttctgtcg tgtcaaagtt gagggcaccg cgtttgtacc gcatagattc
    11221 aagggtttca tggagtttga ccatgagctc aacacttggc acgatagcct tgtatttagc
    11281 cagcttttcc tgatttcctg caatcatgtc gttgacatcg gaataggtca tacggaaggt
    11341 ggttttgata accgtctggc caatccagtg cttgactacc ttgcccttgc gatcaatttc
    11401 cataatagcc gactgggtta gacggtccac atttggattg agggaacaaa tgccgtttga
    11461 caggcgttct ggcaacatgg gcaccacacg gtccgtcaca tagacagacg tcccacgctt
    11521 gacagcttcc tggtccaagg cagagccttc ggtcacatag tagctgacat cggcgatatg
    11581 gacacccaac tccagattgc cgttcttgag ctgcttgata tggaccgcat cgtccaagtc
    11641 cttggcatct gcaccatcga tagtaaagat aatctcatct cgcaggtcca aacgtcctgc
    11701 aaagtcttgt tcagacgggc tttctggtac tcggtcggcc tccgccaaaa cttcatcagg
    11761 aaacttcgac acgatatcca tagactccaa gacttccaag acatcgatcc ccacatcgtc
    11821 cttatggccc accacgtccc gaatggtcgc aacaaagtga tcccgtttct tattgggata
    11881 agcctcgata tcaaccttga ggatttccgt tccggtcaat accagaggtg acttcttgat
    11941 gtaaatcttc tgagcgattt tctggttttt agacttgatg taacctgcat attctggctt
    12001 atcttcgtca aaaacaatca agcccaccgc tgttctcagg ctatgttcca aaatatcaat
    12061 gacttccgct tccgcagccg ttcccttgag acgatctgca acctttttga ttgcaatttc
    12121 aactctgtca ccttcgatag caaagttgac atcgtcacgg ctgacaaaga gatcatcttc
    12181 ctcctcgtca atggtcacaa aaccaaaacc tgacttgtgg gcacgaaaaa taccctgtaa
    12241 ggtcaccttg tttttggaca cttttggagc tggaagagca attcgacccg cattgtcaaa
    12301 gacaagttga cgactacctt ccatgctaga aaccagcttg accaagtctg taaagctctt
    12361 ggcagaacta gctccaagct gatctgccag ctggtccatg gtcacaggac caacttcttt
    12421 aatatagttt ataatttcgt ttttcatgtt gtatttacca gagtgcagga taaaaaccta
    12481 gcactatctc tctttcaatc ctttagttta tcttttatta ctgcgacgta cgaggaaact
    12541 ccgtttccct atttccaact tcaaataatc tcatcattat ttgaactcgc tttgtcgtac
    12601 ttcagtacag tctgcagctc gttgcctagt actaaaagca aactaaaaga ctgtattttg
    12661 cgttatatcc agacgcagtg gttgattgct ccaacaatca aatgattgtt ggaggtggga
    12721 gataggattt gcaaagcaaa tctcaatagt tcgcgtataa cgctccgaac catacctatt
    12781 caacttgtgc gagggtggca gacgaactcc tttacatttg tcgagttctg gcccactccc
    12841 aaaaaaatag accaagaaca agtcccagtc tgatttatct acttacttga aatgataaca
    12901 agtgccagcg catccagcat ccaaagaaaa acaagaatag ctgtaatgcg ttgcatcacc
    12961 gcttcaaaac cacgggcctt tgtacgttca aataaggctc cactagaaga gtcaaagacg
    13021 ttgctagact ggtttttagc cggttgaata aaaatcacta caatcaaaat aacagataaa
    13081 atcaacagaa ttgctaataa tgcttgatac atattttttt cactttctac aataacttat
    13141 gacattatac cataaaacct acttagtttc aaggtggagg gttacttttc tctcttttgg
    13201 gcagtattta aggacttcaa tcttatctgg atgagtcttg gcgtttttgc tagtcaagta
    13261 gttcttgcta ccacattctg aacattgtaa attgatttta actctcacta aacatccctt
    13321 actttcaaat agtttctaaa attggtcaaa gaccagataa ggttaaagag gacaagtccg
    13381 ctcgacagat agaaaaccca gtcataaccc atgtgagcag ccaccgcaga ccccatcatg
    13441 ggaccaacaa ccgaacctag attattaaag agttggttgt aggaaaatat ccttgaaatc
    13501 ccttcttttg gggtcaactt ggtcaaaaga gaattgaccg aaggcaacaa tactcctgtc
    13561 ccaaaaccat acatgaatcg caacaaacca agctggaaag gattttctgc aaaaacacag
    13621 aaaacattaa tcaacagact ataagtcaaa gcaattaata ggaggcgatg gttgccaata
    13681 cggtcaccaa ttttccctaa ataacctgat gtcactagcg atgccatacc aggcaaggaa
    13741 atgataaaac cagcaacaaa taacagatta tctgtctgtc ccaaatgtcg cacatagagg
    13801 gtcaatatag gaacaacagc ctgagcagct gcaataataa tcatagaagt cacaaaaagc
    13861 ccaaccagca tttgccgatc tttcacctgc tcaaatacct ctttaaccga catttcttcg
    13921 ccttttttga ttggaacaaa atcctctcga atatagaaaa cggtcagtaa cacaacgata
    13981 gcataaagaa gtcccaccag caaaaatacc gtatgtacgc caaacatctc tgctaagata
    14041 ccacctaggg tcggaccaat caaattaccc gctaccgcac ctgttgataa ggtacccaga
    14101 gcataccccg tcttatcctt tggaacctga ctggcaatca aggcagtcgc attgggaatg
    14161 taccctgtaa ataccccgtt taggacacgt aaggcaagca accaaaaaac atttggtaca
    14221 aaggccatac cacccatagt aaaaatcatc gcaaaagctg cccgcaccat cataggcttg
    14281 cgaccgtaac ggtccgccaa actcccccag ataggagcca taactgccgc tgcaaaggca
    14341 ttggccgaca ctgccagccc tgcatagtat tccacctgtc caggtcccac tcccaactct
    14401 tctacaaaga ccgagataaa gggcataacc aaggtaaaac tcgtccctgt taggaaattt
    14461 cccaaccaag ccaccttcaa attctgcttc caataactac taccgtcgtc catcctttaa
    14521 ttcctccaaa agttgcgcaa cctgtgctaa ggtcgcctca accgctccgc tattgtcaat
    14581 caccacctgg gcttgcgacc gtttttcctc taaagaaagc tgagcagcca gacgattttc
    14641 cgcatcttga acagctaagc cattacgttt cataagccgt tccaactgct gcgctctatc
    14701 gacataaacc agccagactt catctacttc cccgctataa tctgcctcgt aaagcaaagg
    14761 aatatccata aaaattacat cctcagtctg cttgagagca tcccttcttg ccagcaattc
    14821 atgtctgata atttggtcct gcaggtcaga caggcgagcc cgcagattgc tatccgcaaa
    14881 aacagcctga cccagtttga acctatctaa atttccatca tctgatagga tgtcttgacc
    14941 aaattctttc agcaaaatct gatagagctt gccacctttg gcctgcaatt catgcacgac
    15001 cgcatccgca tcgatgactg aatagccctg ttctcgtaaa aaagctgtga ccgttgattt
    15061 tccagaggcg attccgcctg ttaaaccgat aattttaacc atgtttcacc tgacacgtgg
    15121 gacagaaatg cgtccctcga ccgcccagct ggattttgac aatctccgtc tggcaacgga
    15181 gacaggcctg ccctgtcttt ccgtaaactt gtaaataatc ctgcatggtc ccatccatgc
    15241 ccaaggcatt tttataggtc cgaatggttg aaccaccttt ttcgataccc agttgcagaa
    15301 cttctatggt agcttggcga aggctagtta cctgctctgc cgacagctga ttacttgctt
    15361 gagcaggatg aacttgtgct ctaaacagaa cctcatctac atagatattg cccaaaccag
    15421 ccaccaaaga ctggtccaaa agatgcgact taatgggctt tttcgactta gctaactttt
    15481 tggcaaattc ttctaagtca aaatcttcct ctgtcggctc aggaccaatt tttcgactga
    15541 taaaataggc atccacatct gccttgccca gcagttccat ggttccaaac ttgcggacat
    15601 cttgatagac caaggttgat tcatccgtaa aggtgaaaaa ggcatgaaag tgcttgttgg
    15661 caggcacttg gtcaggaaag aaattgtact taccttccat tcgcaagtgg gaaatgagga
    15721 catggtcggt caggtaaatc aagagatact tgccacgacg gtccacatct aaaatctcct
    15781 gaccaagcaa gtcctgacag aaggcatcca caccagtctt aatcatagca gcataggtca
    15841 ccttgacctt ttcgatgacc tttcccttga ccaaccgatt taaaccacga cgaaccgtct
    15901 caacctcagg caattcgggc atactaagat actaagccgt taagcgactc aaaga
//
LOCUS       DASFRC010000041        15791 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.041, whole genome shotgun sequence.
ACCESSION   DASFRC010000041 DASFRC010000000
VERSION     DASFRC010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 15791)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15791)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15791
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.041"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            249..878
                     /locus_tag="U1087_000888"
     CDS             249..878
                     /locus_tag="U1087_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM4755385.1"
                     /translation="MIEWIFFDLGSTLLDEEAAYDYYIDKCVKKLESLDIEVSSDSYK
                     KKMVEYAHKSLDPIRATWHYFAPTEPRPLWTNEGVSLYPETIDALEKLSQNYRLGIVA
                     NQSSSVRDLLKEWGIESYFQLIILSEEVGLSKPDTTIFTLALQKVNIPADRVVYVGDR
                     YDNDILPAKSLGMWTVRILTGFGKHASENEKLKSDWVIPSLQEITNIFE"
     gene            complement(924..1109)
                     /locus_tag="U1087_000889"
     CDS             complement(924..1109)
                     /locus_tag="U1087_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755386.1"
                     /translation="MNPVDLFNQVKELIANKDFDGAKQFIEENKDQFGEYLEQAKGLL
                     SGSEGVNGLLDKVKGLF"
     gene            complement(1173..2177)
                     /locus_tag="U1087_000890"
     CDS             complement(1173..2177)
                     /locus_tag="U1087_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactonase family protein"
                     /protein_id="HEM4755387.1"
                     /translation="MTIYFGTYTKRKSKGIYKANFDSETGQLSNLELVTEEPNPTYLA
                     FDKAGHLYSVGAENGLGGIVAFNADYTLINHVVSEGAPLCYVAVDETRDLVYGSNFHK
                     GQLLVYKRLADGSLELADVAQHGGSGPHENQASAHVHFSDLTPDKFLVTCDLGCDQVV
                     TYKVSDQGKVEKIATYQAAPGSGPRHIVFHPVAKIAYLICELNSTIEVLIYDGWGQFE
                     HLQTVSTLPEDHTGFNGTAAIRITKDGKFIYGSNRGNDSIAVYKTLADANLELVEIVP
                     TNGKTPRDFTLSPDEKHLIVVHQDSDNATVFERDVENGCLTELSHDFYVPEAVCVTFL
                     "
     gene            2313..3479
                     /locus_tag="U1087_000891"
     CDS             2313..3479
                     /locus_tag="U1087_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000435446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEM4755388.1"
                     /translation="MEDKHQKFSLTWFFRLFLNSQAVTFLLVTLLTFLTIFIFSKISF
                     LFRPIGSFLEIVLLPMILTGLLYYLLNPMVDWMEKHKISRTVGISILFVLISLLIIWG
                     LAVAIPSIQEQVTSFAQNLPANIQKIEGQVTSLLQDQRFEQFRPTALELLNKVNDQAV
                     AYAQKFSTSAVNWASNLISTASQIIVAVLIMPFILFYLLRDGQYLNKHITQYLPTKWR
                     EPIGTVLSDVNGQLSNYVRGQVTVAIIVALMFSVMFSIIGLSYPITLGVMAGFLNLIP
                     YLGSFLAMIPAVILGLIAGPIMLIKVLVVFMIEQTIEGRFVTPLIIGSSLSIHPITIL
                     FVLLTAGQMYGVLGVLLGIPIYASIKVLVKATFEWYKAHSSLYEDEENEVVNEQ"
     gene            3469..4698
                     /locus_tag="U1087_000892"
     CDS             3469..4698
                     /locus_tag="U1087_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEM4755389.1"
                     /translation="MNNSEKMLVCLDQQDLEKANKYFKRALVQDDSETLLSLAAYLEG
                     IGFFPQARQIYEQVKEEFPEVLINLAQIAFEDGLVEESFGYLEEISEDSSVYVEALLV
                     KADLYQAEGLSDVAREKLLEASHLSDEPIILFGLAELDMELELFNEAISYYAQLDNRE
                     IYELTGISTYQRIGIAYASLGKFEAAIEFLEKAVELEYDDQTVFELAALLFEREEYQK
                     ANLYFKQLDTINPDFEGYEYAYAQSLHAEHKIDDALAMTQKGLAKNDFDANLLLQASQ
                     YAYELHDEESAEDYLLKAKEVADDSNELALRLSNLYLEQERFEEVVALFDEEVDNVLA
                     RWNVAKAYQALERDDEAIELYDELAGELAENPEFLADYVAVLRQLGRLDEAKEQASRY
                     IQLVPDDLAMQEFLNEE"
     gene            4702..5418
                     /gene="budA"
                     /locus_tag="U1087_000893"
     CDS             4702..5418
                     /gene="budA"
                     /locus_tag="U1087_000893"
                     /EC_number="4.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019322637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate decarboxylase"
                     /protein_id="HEM4755390.1"
                     /translation="MQVNRLFQYNTLGALMAGLYGGSLMVGELLEHGDLGLGTLDSID
                     GELIVLDGKAYQAKGAGEKPEVVEVPADMKVPYAAVIFHEAEVIFKQRFEMTSDELHQ
                     RIESYYDGENLFRSIKIKGTFSHMHVRMIPKSASDVRFAEVASRQPEYIAENISGTIV
                     GIWTPEIFHGVSVAGYHLHFISDDLTFGGHVMDYVISEGMVEVGPVDQLDQRFPVQDR
                     QYLFAKFNAKEVREDIDKAE"
     gene            complement(5444..7102)
                     /locus_tag="U1087_000894"
     CDS             complement(5444..7102)
                     /locus_tag="U1087_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_147463931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HEM4755391.1"
                     /translation="MSFDGFFLHHMTAELKTNLEGGRIQKINQPFEQEIVLNIRSNRQ
                     SHKLLLSAHSVFGRVQLTQSDFTNPKVPNTFTMILRKYLQGAIIEEIRQLDNDRILEF
                     SVSNKDEIGDHIQATLMMEIMGKHSNIILVDKSEQKIIEAIKHVGFSQNSYRTILPGS
                     TYIRPPETHSLNPYTVSDEKLFEILSTQELSPKNLQQVFQGLGRDTASELANHLQTDR
                     LKNFRAFFDQATQPSLTDKSYAALPFANSPENQPLFESLSSLLDFYYQDKAERERVAQ
                     QANELIKRVASELEKNRKKLVKQEQELADTETAELMRQKGELLTTYLHQVPNDQASVR
                     LDNYYTGEELEIELDVALTPSQNAQRYFKKYQKLKEAVKHLTNLIEETKATIVYLESV
                     DTMLGQASLAEIDEIREELIETGYLKRRHREKIHKRQKPERYLATDGKTIILVGKNNL
                     QNDELTFKMAKKGELWFHAKDIPGSHVVITDNLDPSDEVKTDAAELAAYFSKARHSNL
                     VQVDMIEAKKLHKPTGGKPGFVTYRGQKTLRVTPTEDKIKSMKI"
     gene            7843..8844
                     /locus_tag="U1087_000895"
     CDS             7843..8844
                     /locus_tag="U1087_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM4755392.1"
                     /translation="MLKNKNLLATIVALTVMVVAALFLTQKEQSNSSNSTEKVKIGVL
                     QFVTHDSLDEIYKGIKAGLKEGGYTTTDNLEIDFMNAEGDQSQVQTMSKKLVDNGNEL
                     LIGIATPAAQGLANATTELPIIMGAVTDPVGANLVTDLKNPGGNITGVSDQTPVADAV
                     SLIKEITPDAKTIGVLYSSNEDNSKIQVAEFKAAAEEAGYTVLEYAVASSNEIAATVE
                     VASSKADVLFTPVDNTVASAFSTVVSVVNKTKTPIFTSVEDMVEGGGIASVTLSQYDL
                     GVATGKMAAKILDGANPADTPVQIFNEGTVVVNQKVAKELGITLSDDVISKASKVIE"
     gene            8867..9733
                     /locus_tag="U1087_000896"
     CDS             8867..9733
                     /locus_tag="U1087_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM4755393.1"
                     /translation="MIVSTVSQALLWAVLGLGIFVTFRILNFPDMTTEGSFPLGGAVA
                     VTLLTQGVHPILATLAAVLVGCLAGFITGLLYTKGKIPTLLAGILVMSSCHSVILFIM
                     GRANLGLLNTKRLQDFLPFSEQINGLLLGLGSLAVVIGALMFFLYTRLGQAFIATGDN
                     PDMARSFGINTSRMELLGLVLSNGIIALAGALIAQQEGYADVSRGIGVIVVGMASLII
                     GEVIYGNLTMLERFLAIVVGAIFYQFLILVVISLGINTSYLRIFSAMILATCLMVPEL
                     KNKLLKGASLSR"
     gene            9730..10488
                     /locus_tag="U1087_000897"
     CDS             9730..10488
                     /locus_tag="U1087_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000125420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4755394.1"
                     /translation="MKAIVELKNATKVVTNGFDEERVILDNVNLTIYQGDFITILGGN
                     GAGKSTLFNVIAGTLPLTSGSVHILGEDVTNWPAEKRAKYLARVFQDPKMGTAPRMTV
                     AENLLIAKYRGEGRGLVPRRLAQQMEEFVQLLPRVGNGLEKHLDTPAGLLSGGQRQAL
                     SLLMASLKQPELLLLDEHTAALDPKTSQSLMQLTDELIETKGMTALMVTHQMEDALRH
                     GNRLIVMKNGQIIQDQTAEEKSKMKLEDYYKLFD"
     gene            10714..11262
                     /locus_tag="U1087_000898"
     CDS             10714..11262
                     /locus_tag="U1087_000898"
                     /inference="COORDINATES: protein motif:HMM:NF012745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM4755395.1"
                     /translation="MNTPLISVIVPVYNVEGYIEQCIRSIQSQTYKNLEVIIVDDGSP
                     DNSIVKAKSLTDGDPRFIYIQQENGGLSAARNTGLEHATGEYVTFIDSDDFLFEASIE
                     MMYHGLKLSHAEISIGAFCRFDDVNFIFYDYGSFKFELLSPEELLERQDNQVLALRLM
                     FWTAWGKNALACGSGICFWLVT"
     gene            11210..11428
                     /locus_tag="U1087_000899"
                     /pseudo
     CDS             11210..11428
                     /locus_tag="U1087_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647096.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl-tRNA synthetase associated
                     domain-containing protein"
     gene            11434..11838
                     /locus_tag="U1087_000900"
     CDS             11434..11838
                     /locus_tag="U1087_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755396.1"
                     /translation="MRKCLAICSLLCCLFLVGCRTGAAYQAEIEPMEQSELYTEKEIE
                     AAILVVQDYFDHHLNSCKLLTIGYSGDNEKEFDEWAEHYGAEEAIILTSSFKVAAEGA
                     EPTLEPNSTHTDWKWILVRNVGGKWEHKGHGY"
     gene            12094..13755
                     /locus_tag="U1087_000901"
     CDS             12094..13755
                     /locus_tag="U1087_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018371225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEM4755397.1"
                     /translation="MSTIKIMALGGVRENGKNLYIAEVNEHIFVLDAGAKYPENEQLG
                     VDVVVPNFDYLEENKHRVAGVFLTHGHADAIGALPYLLEKVKVPVFGSHLTIELAKLL
                     VKGNNATKKFNDFHVINAETEIDFGDSVVSFFQTTHSIPESLGIVVKTDEGNIVYTGD
                     FKFDQAADKFYRTDFGRLAEIGNEGVLALLSDSANADSNVQVASMHEAGEEILNTIAD
                     CDGRVIVAAVASNIVRIQQIFDAAEATGRRVVLTGHDVENIVRTAIQLKKLRLVSERL
                     LVKPKDMNKYEDHELIILETGRMGEPLNGLRKMSIGRHRYVEIKEGDLVYIVTTPSIS
                     KEAVVARVENLIYKAGGTVKSITKKLRVSGHGNARDLQLMLNIMKPKYLFPVQGEYRQ
                     LDAHAKAALEIGMYPENIIIVKRGDVMAFEEGDFVHSGAVPAGDVMIDGNAIGDVGNI
                     VLRDRKILSEDGIFIVAITVNRREKKIISKAKVNTRGFVYVKKSKDILRESSELVNTT
                     VENYFTKDSFDWAELKSAVRDDVAKFLFDQTKRRPAILPVIMEVK"
     gene            13816..14592
                     /locus_tag="U1087_000902"
     CDS             13816..14592
                     /locus_tag="U1087_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000290006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HEM4755398.1"
                     /translation="MAIMKIEYHSEALDMSRQVTVLYPDRNRVENPDDNDIPVLYLLH
                     GMGGNQDSWLNRSTVERLVRYTNLIVVMVNTDKGWYTNTTYGMNYFDAIAVELPQILK
                     RFFQNMSDKREKNFIAGLSMGGYGTFKIAMTTNRFSHAASLSGALYFDFDNPATAELG
                     SLSYWRGVFGDISDKQNPNNLLEITKQSDKKTKFYAWCGEEDFLFEGHQKAVGELKEL
                     GFDIEASFGPGKHEWYYWNQQIEKVLAWLPIDFKLEERLS"
     gene            14658..15353
                     /locus_tag="U1087_000903"
     CDS             14658..15353
                     /locus_tag="U1087_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012000255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="matrixin family metalloprotease"
                     /protein_id="HEM4755399.1"
                     /translation="MKLIGNILRTIWRTFWGLIWLSMVLLACGLGLLFYFQQEAAPQM
                     LQTLAQEVQLMVKGQSEVTIEEGVNTIKHLTTDMVNTADHGRWESNTATVYIETQNPT
                     FVAAYETAIANWNATGVFTFVMTSDPNQADIIATEMNDGNTQAAGEANSTTNLLTNYY
                     SLVTVRLNSFYLLNDQYGYDMDRIIHTAEHELGHAIGLDHEDSQTSVMESAGSNHGIQ
                     QADIDAVLALYSN"
     gene            15363..15731
                     /locus_tag="U1087_000904"
     CDS             15363..15731
                     /locus_tag="U1087_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755400.1"
                     /translation="MLRTIKNTIKRYPEQALLFIYNAGIFAWLQSTSHSIMEEIGIDS
                     TWFDKIPEPIKVWTGASLESMQTLLNSSAWGWLIVSMILMMLIRFVKGVIKFVIMLII
                     IGGGLYLLWQNKELLSGLKV"
BASE COUNT         4513 a         2796 c         3684 g         4798 t
ORIGIN      
        1 tagtacagtg tactaattta tccccgagtt agaataacga gggttatagt aaaaacaagt
       61 ccgaagattt tcggacttgt tttcaatgtc tgggagactg ttttatcccc gagctagtat
      121 agtgagggat tagtaaaact ctctaggttt tcctagggaa ttttctttgc cttgatattg
      181 ataaaatggt attctaaaaa ggcagatcaa cttaagtatt ctcattttga aaagagatgg
      241 agagtgggat gatagagtgg atattttttg atttgggttc gacgctttta gatgaagagg
      301 ctgcttatga ttattatata gacaagtgtg tgaagaagtt agagtctctg gatatagagg
      361 tttcatcaga ttcttataaa aagaaaatgg tggagtatgc tcataagtcg ctggatccca
      421 ttcgtgcgac ctggcactat tttgcaccga ccgagccacg tcctttatgg acaaatgagg
      481 gtgtgagcct gtatcctgaa acaatagatg ctctagagaa gttatcacaa aactatcgat
      541 tggggattgt tgccaatcag tctagtagtg ttagagatct gcttaaagag tggggaattg
      601 agtcttattt tcaactcatc atcctctctg aagaggttgg gctatctaaa ccagatacaa
      661 ctattttcac acttgccttg caaaaagtaa acatccctgc agatagagtt gtctatgtcg
      721 gggataggta tgataatgat attctacctg ctaaatcttt gggaatgtgg actgtacgga
      781 tactgactgg ttttggaaag catgccagtg aaaatgaaaa attgaagagc gattgggtaa
      841 ttccttcatt gcaagagata acaaatattt ttgaataaac aaaaaaacta gactgaacat
      901 tctcagccta gtttttacat gtattagaat aagcctttaa ctttatctaa aagaccgtta
      961 acaccttcag aacctgataa caagcctttt gcctgttcca agtattcacc aaattggtcc
     1021 ttgttttctt cgataaattg ttttgcacca tcaaagtctt tgtttgcaat caattctttt
     1081 acttggttaa aaagatctac tggattcacg ttggaatcac ctcctatgag actattaaac
     1141 caaaactgga cggatttcac aactgaaacg acttataaaa atgtaacgca aactgcttca
     1201 ggaacataga aatcgtgtga aagctcagtc aaacagccat tttcgacatc tctctcaaat
     1261 acagttgcat tgtcagaatc ttgatggaca acaatcaaat gcttttcatc aggactaagc
     1321 gtgaaatcgc gaggagtttt cccatttgtt gggacgattt caactaattc taagttggca
     1381 tcagcaagcg ttttgtagac tgcgatagag tcgtttccgc ggttggatcc ataaataaat
     1441 ttaccatcct ttgtgatgcg aatagcggca gttccgttga aaccagtatg gtcttctggg
     1501 agagtagaga cagtttgtag gtgttcaaat tgtccccagc cgtcgtagat aagcacttca
     1561 atagttgaat tgagttcaca gatgagatag gcgatttttg cgacaggatg gaagacaatg
     1621 tgacgtggac cacttcctgg cgcagcctga taggttgcga ttttctctac ttttccttgg
     1681 tcagatacct tataggttac cacttgatca catcctaaat cacaggttac taaaaattta
     1741 tcgggcgtca aatcagaaaa gtgaacatgg gcggaagctt ggttttcgtg cggcccagat
     1801 cctccatgtt gagcgacatc agctaattct agcgaaccat ctgccaaacg tttataaaca
     1861 agtagttgcc ctttgtggaa attggagcca taaactaaat ctcttgtttc atctacagcg
     1921 acatagcaaa gtggtgcgcc ctctgataca acatggttga ttagagtata gtcagcatta
     1981 aaggcaacga tacctcctag accattttca gcgccgacgg agtatagatg tccggcctta
     2041 tcaaaggcaa ggtaggtagg gttaggttct tcagtgacca attctagatt gctaagttgt
     2101 cctgtttcag aatcaaaatt tgctttataa attccttttg atttacgttt tgtgtaggta
     2161 ccgaaataga tagtcatagg attctccttt ttggaaatga ttgataaaat tataccatgt
     2221 ttttctgaga aagtcgtata aattctgtag ttgattttta caaaaatcct ttctccatgt
     2281 tacaatagaa aaaaagacta ggagtgtatt agatggagga taagcatcaa aaatttagtc
     2341 tgacttggtt tttccgcttg tttttaaata gccaagcggt gacattttta ttggtaacct
     2401 tgctgacttt tttgaccata tttattttta gtaaaattag ttttttattc agaccaatag
     2461 gaagcttttt agaaattgta ttgttaccga tgattttaac aggtcttttg tattacctat
     2521 taaatccgat ggttgactgg atggaaaagc ataaaatttc tcgtacagtt ggtatttcca
     2581 ttctctttgt tttaatcagt cttctcatta tctggggact ggcggtggca attccgagta
     2641 ttcaagagca agtgacatct tttgcgcaaa acctgccagc aaatatccaa aaaatcgaag
     2701 ggcaagtgac gagcttattg caggaccaaa gatttgaaca atttcgtcct actgcattgg
     2761 aattgttaaa taaggtcaat gatcaagcag ttgcttatgc gcaaaaattt tcaacaagtg
     2821 ctgtaaactg ggcaagtaat ttgatttcga cagcatctca aattattgtt gctgttctga
     2881 ttatgccttt tattctcttt tatctgttac gggatggtca gtatttgaat aaacacatca
     2941 cccaatatct accaaccaag tggagagaac cgattggaac agtactatca gatgtgaatg
     3001 ggcaattatc aaactatgtt cgtggtcagg tgaccgttgc gattattgta gccttgatgt
     3061 tctcagtgat gttctcaatc attggtctta gctatccaat aactttgggg gtgatggctg
     3121 gtttcctcaa tctaattccg tatttaggtt ctttcttggc catgattcca gctgttattt
     3181 taggattgat tgctggtcca atcatgctga taaaggtttt agttgtcttt atgattgagc
     3241 agactataga aggtcgtttt gtgacaccat tgattatcgg aagctcccta agtattcatc
     3301 cgattaccat tttatttgta ttattgacag ctggtcagat gtacggtgtc ctaggagttc
     3361 ttctgggaat tccaatatat gcctctatta aggttttagt gaaagcgaca tttgaatggt
     3421 acaaggcaca cagtagtttg tatgaagatg aagaaaatga ggttgtgaat gaacaatagt
     3481 gaaaaaatgt tggtttgttt ggaccaacag gatttagaaa aggctaataa gtatttcaag
     3541 cgcgccttgg tgcaagatga tagcgaaacg cttttgtcct tggcagccta cttagaaggc
     3601 attggttttt tcccacaggc tagacaaatc tatgaacagg tcaaagaaga atttcccgaa
     3661 gtactgatca atcttgccca aatagcattt gaagatggct tggttgaaga atctttcgga
     3721 tatttggagg aaatttcgga agacagttct gtctatgtgg aagccttatt ggttaaggcg
     3781 gacctgtatc aggcagaagg cttgtcggat gtggcgcgtg aaaaattgtt agaagcaagt
     3841 cacttatcag atgaacccat catcctcttt ggcttagcag aattggatat ggaactggag
     3901 ctttttaatg aggctatttc ctactatgcc cagctggata atcgtgaaat ctacgaatta
     3961 acgggaattt ctacctatca gcgaattggt attgcctatg caagtttagg gaaatttgaa
     4021 gcggcgattg aatttttgga aaaagctgtt gagttggaat acgatgatca gacggtcttt
     4081 gaattggctg ctctgctatt tgaaagagaa gaataccaaa aggccaatct ctatttcaag
     4141 cagttggata ccatcaatcc tgattttgag ggctatgaat atgcctatgc tcagtcgctt
     4201 catgccgagc ataagattga tgatgccttg gctatgactc aaaaaggcct ggcgaaaaat
     4261 gactttgatg ccaatctctt gctccaggct tctcagtatg cctatgaatt gcatgacgag
     4321 gagtctgcgg aagactatct cctcaaggca aaagaggtgg cagatgatag taacgaacta
     4381 gctctgcgct tgtctaatct gtatcttgag caggaacgat ttgaagaggt tgtggcttta
     4441 tttgatgaag aggtcgataa cgttctagct cgctggaatg tggccaaggc ttatcaagct
     4501 ctagaaagag atgatgaagc tattgagctt tacgatgaat tggctggaga attggctgag
     4561 aatcctgaat ttttggctga ttacgtagcg gttttacgtc aacttggtcg tttggatgag
     4621 gcaaaagagc aagctagtcg ttatatccaa ttggtgccag acgatttagc catgcaagaa
     4681 tttttgaatg aagagtaggt tatgcaagta aatcgattat ttcaatacaa tactttaggt
     4741 gccttaatgg ctggactgta tggcggctcc ttgatggttg gcgaattgtt ggaacatggt
     4801 gatttgggtt tgggaactct ggattccatt gatggcgagc tgattgtttt ggatggaaag
     4861 gcttatcagg ccaagggagc aggggagaaa ccagaagtgg ttgaagttcc agctgatatg
     4921 aaagttccct atgcggcggt cattttccat gaggcagaag tgattttcaa acaacgcttt
     4981 gaaatgacta gcgatgaatt gcaccagcgg attgaatcct attatgatgg cgaaaatctt
     5041 tttcgttcta tcaaaatcaa agggacgttt tcgcatatgc acgtgcgcat gattccaaaa
     5101 tcggcttctg atgttcgttt tgcggaggtg gcaagtcgcc agcctgagta tatcgctgag
     5161 aatatttcag gtaccattgt tggtatttgg acgccagaga ttttccatgg tgtcagtgtg
     5221 gctggctatc atttgcattt tatttcggat gatttgacat ttggcgggca tgtcatggac
     5281 tatgtgattt cagaaggaat ggtggaagtg ggaccagtag atcaactaga ccaacgtttt
     5341 cctgttcaag accgccagta tctttttgct aagttcaacg ctaaggaagt tagagaagat
     5401 attgataagg cggagtaggt ttcaatacag aaaaatccat gaactagatt ttcatggatt
     5461 ttattttgtc ttcagttggg gtgacacgga gggtcttctg accgcggtag gtcacaaaac
     5521 ctggcttgcc acctgttggt ttatggagtt ttttggcttc aatcatgtcg acttggacca
     5581 agttagaatg tctagccttg gagaagtagg cagccaactc ggcagcatcg gtcttgacct
     5641 catcgcttgg gtccaagttg tctgtgatga ccacatgact gcctgggatg tctttggcat
     5701 ggaaccaaag ttcgcctttt ttggccattt tgaaggtcaa ctcatcattt tgcaggttat
     5761 ttttcccgac cagaataata gtcttcccgt ccgtcgccaa gtaacgttca ggtttctggc
     5821 gcttatggat tttctcacgg tggcggcgct tgaggtagcc tgtttcaatc aattcctcac
     5881 gaatctcatc aatttcagcc agactagcct gtcccagcat ggtatcaacg gactccagat
     5941 agacaatggt cgccttggtt tcctcaatca agttggtcaa gtgcttgacc gcctccttga
     6001 gtttctggta ctttttgaaa taacgttggg cattctggct aggagtcaaa gccacatcca
     6061 actcaatctc caactcctct cccgtatagt agttgtctaa tctcacgctc gcttggtcat
     6121 ttggcacttg atgcagatag gtggtcagga gttcgccctt ttgccgcatc aactccgccg
     6181 tctccgtatc cgccaattcc tgctcctgct tgaccagttt cttgcgattt ttctccaact
     6241 cactggctac ccgcttgatc agctcattgg cctgctgggc cacccgctcc cgctccgcct
     6301 tgtcctgata gtagaagtcc agcagactgc tcaggctctc aaagagtggc tggttttcag
     6361 ggctattggc aaatggcaga gcagcatagg atttgtccgt caggctaggc tgagttgcct
     6421 gatcaaaaaa ggcacggaag ttcttgaggc gatccgtctg caagtgattg gctaattcag
     6481 aagctgtgtc ccgacccaac ccttgaaaga cctgttggag attttttgga ctcagttcct
     6541 gagtcgataa gatttcaaac aatttctcgt cagataccgt ataaggattg agagaatgcg
     6601 tctccggtgg acgaatgtag gtggaacctg gcaagatggt tcggtaggaa ttttgcgaga
     6661 aaccaacgtg cttgatagcc tcgataatct tctgttcaga cttatccacc aagatgatat
     6721 tactgtgctt gcccatgatt tccatcatca aggtagcttg gatatggtcg ccaatctcgt
     6781 ccttgttgga caccgaaaat tctaagatgc ggtcattgtc caactgacga atttcctcga
     6841 taatggcgcc ctgcaagtat ttccgtagaa tcatggtaaa ggtattgggc acttttggat
     6901 tggtaaagtc cgactgggtc agctgaaccc gcccgaaaac cgaatgggcg gacaggagca
     6961 atttatggct ctgacggttg ctgcggatgt tgaggacaat ctcctgttca aagggctggt
     7021 tgattttctg aatccgccca ccttctaaat tggtctttaa ctcagccgtc atgtgatgta
     7081 aaaaaaatcc gtcaaaagac atggttttcc tctttctaat agctataact cagactagta
     7141 tatcatattt tagagaattt agatgagact tggtctaaag ccaataaaaa attggtaaaa
     7201 agttttcaga aaatttaatt aaaagtcttg acaaagtgat tttgataccg tataatcgtc
     7261 tgtaatcaga agaagtagta aagcagaagt cttcagggag cctgtggtgc tgagaacagg
     7321 tggcggagtt ttatgaaatg ggctgatgtg cagaattgtc tgtcttcaga cttaggtgca
     7381 caaatgattg tttggtatag catactttgc gtagactgtt ttggttgagt acgaggcagg
     7441 tcgacgtagc ttatactagc ggtatagcaa ggagagctaa caaagtacac agccaaatca
     7501 atcatgcaaa tgaacttaaa acaatgatag ttcggtccgc acaccttaca gtgcaactcc
     7561 ttgttagagg agatgagata tgggaggatt ctagacaatt cccataagtg aggtggcacc
     7621 gtgtcattga cgccctcgca tactgttttt cagtatgcgg gggctttttc cttgtctttg
     7681 tagattgtcg ttcaattgaa aaaatgagat accgatcatt atattctact ttgacaatga
     7741 tagaaattac gaggtaatca tgatgaaacg atggcgatgg tgggataata tattgatgac
     7801 gtagaaattg gatattgtgc atttttaaaa ggagaatgaa atatgttgaa aaataaaaac
     7861 ttactagcta caattgttgc ccttactgtt atggtagttg ctgccctgtt tttgacgcaa
     7921 aaagaacaga gcaattcatc caatagcaca gagaaagtca aaattggagt tctgcaattt
     7981 gtgacacatg attcattaga tgagatttat aagggaatca aggcaggtct taaagaaggt
     8041 ggttatacca caacggataa tttagaaatt gattttatga atgctgaggg tgatcaatcc
     8101 caagttcaaa ccatgagtaa aaaattggtg gacaatggca atgaattatt gattggtatc
     8161 gcaacacctg ctgcacaagg tcttgccaat gcaaccacag aattacccat tatcatgggg
     8221 gctgtgacag atcctgttgg tgctaacttg gtaactgact tgaaaaatcc tggtggaaat
     8281 attacagggg tatcagacca aacaccagta gcagacgcag tttctctcat taaagaaatc
     8341 acaccagatg ctaaaactat cggtgtcctc tattcttcaa acgaagacaa ttcaaaaatt
     8401 caagtagcgg aatttaaggc agcagcagaa gaggctggct atactgttct tgaatatgca
     8461 gttgcttcta gtaatgaaat tgcagcgaca gtagaggtcg caagtagtaa agcagatgtt
     8521 ctctttacac cagtagacaa cacagttgcc tcagcatttt caactgtcgt atctgtggta
     8581 aataaaacca aaactccgat tttcaccagc gtagaagata tggtagaagg tggaggtatc
     8641 gcatctgtta cccttagcca gtatgacttg ggtgtggcaa ctggtaagat ggctgcgaaa
     8701 attcttgatg gtgccaatcc agcggataca cctgtacaaa tctttaacga gggtaccgtt
     8761 gttgtcaacc aaaaagttgc taaagaatta ggaattacct tgtcagatga tgtgattagt
     8821 aaagcaagca aggttatcga ataagagata aaagaaaagg aaaaatatga ttgtatcaac
     8881 agtttcacag gctcttttat gggctgtact aggtttggga atattcgtta cctttcggat
     8941 tctgaatttt cctgatatga cgacagaggg ctctttcccg cttggaggag cggttgctgt
     9001 taccttattg acgcaaggag ttcatcctat cttggctact ctagcagcag ttcttgttgg
     9061 ctgtttggcg ggctttatca caggcttgct ttataccaag gggaaaattc ccactctcct
     9121 agctggtatc ttggtcatgt cttcctgtca ctctgtcatt ttatttatca tgggtagggc
     9181 aaatctaggc ttactgaata ccaaacgttt acaagatttc cttccttttt ctgagcaaat
     9241 taatggtctc ttgctaggtc taggtagtct agcggtggtg attggtgcct tgatgttctt
     9301 cctctatact cgccttggac aagcctttat tgcaacaggg gataatccag atatggctcg
     9361 cagttttggt atcaatacaa gtcgaatgga gttgctaggt cttgttcttt caaatgggat
     9421 catcgctctt gcaggtgcct tgattgcaca acaagaaggc tatgcggatg tgtcgcgtgg
     9481 tattggtgtc attgtggtcg gtatggctag tctgattatc ggtgaggtaa tttatggtaa
     9541 ccttactatg ttagaacgat tcttggccat tgttgtcgga gcgattttct atcagttctt
     9601 aattttggtg gtcatttccc tcggtatcaa taccagctac ctccgtatct tctcggccat
     9661 gattctggca acttgcctca tggttcctga gttgaaaaat aaacttctga aaggagccag
     9721 tctgtcacga tgaaagcaat tgttgaatta aaaaatgcca ccaaggtggt gacaaacggt
     9781 tttgatgaag aacgtgtgat tttggacaat gtcaatctga ccatttacca gggtgatttt
     9841 attaccattt tgggtggaaa tggggctggg aagtcaactc tctttaatgt cattgctgga
     9901 accctaccct tgactagtgg ttctgtccat attcttggtg aggatgtaac caattggcct
     9961 gcagaaaaac gtgctaagta tctggcgcgt gttttccaag atcctaaaat gggtacggcg
    10021 ccacggatga cggtggcaga aaatctactg atagctaagt accgtggcga gggacggggc
    10081 ttagtgccac gcagattggc ccaacagatg gaagagtttg tccagctttt gccgagagtg
    10141 ggaaatggtc tagaaaaaca tctggacacg ccagcagggc tcttatcagg tgggcaaaga
    10201 caggccttga gtttgttgat ggcgagtttg aaacagcctg aacttttact cttggatgag
    10261 catactgcag cccttgaccc taagaccagc caatccttga tgcaattaac ggacgagttg
    10321 attgagacca agggaatgac ggccctcatg gtcactcacc agatggaaga tgctctgcgt
    10381 cacggtaatc gcttgattgt catgaaaaat ggtcagatta ttcaggacca aacggctgaa
    10441 gaaaaatcca agatgaaact agaagattat tataagttgt ttgattagat gacggattca
    10501 ttctgtgtta acaacagcta tagcgatttt gtccaaagtc tctattctaa tccgttaatg
    10561 tgaaatactg ctatataaaa gaggttttca cctctttttt tactgctctg aaggataaac
    10621 agtagttttt tcttgactaa actcatatat atataataga ttaagttcta tcaaaatgat
    10681 gagatataaa atacacaaag gatattgact aagatgaata caccgctgat ttccgttatt
    10741 gtaccagttt ataatgttga aggatatata gaacaatgta ttcgctctat tcaaagtcag
    10801 acttataaaa atttagaagt cataatagta gacgatggta gtcctgataa cagtattgta
    10861 aaagctaagt cgcttacaga tggagatcca cgttttatct atatccaaca agaaaatggt
    10921 ggcttatcgg cagctcgtaa tacaggttta gaacatgcaa caggagagta tgtaaccttt
    10981 attgactctg atgatttttt atttgaagca tctattgaga tgatgtatca tggattgaaa
    11041 ttgtctcatg ctgaaataag cataggagct ttctgtagat ttgacgatgt gaactttatc
    11101 ttctacgatt atgggtcatt taagtttgag ttgctatctc cagaagaact attagaacgt
    11161 caggataatc aagttttagc gcttcgattg atgttttgga cagcttgggg aaaaaatgca
    11221 cttgcctgcg ggagtggtat ctgtttttgg cttgttacat aatgttgata aggatattca
    11281 agtctttttt gataaagaaa tcctttctga atccattcta accttccacc ccaatgttaa
    11341 tacgaaaacg atttttgtaa agacagaaga tgttttgcgt tttgtagaag agattggctt
    11401 ttcagcaacg attgttgact tgaggtaaca aagatgagaa aatgtttagc tatttgtagt
    11461 ctgttgtgtt gtcttttttt ggtaggatgt cggacaggag cagcttatca ggcagagatt
    11521 gaaccgatgg aacagtcaga attgtatacg gaaaaagaga ttgaggcggc tattcttgta
    11581 gttcaagatt actttgatca ccatttaaac agttgtaaat tgctgactat cggttacagt
    11641 ggtgataatg aaaaggaatt tgatgagtgg gcggagcact atggtgcaga ggaagctatt
    11701 atcctaactt cgtcttttaa ggtagcagct gagggggcag agcccacctt agagcctaat
    11761 agtacccata cggattggaa atggatttta gtgcggaatg ttggtggtaa gtgggaacat
    11821 aagggacatg gttactaatg tatatgtaga acttcgttga ttttcagcgg agttttttgt
    11881 aaattttctt gaaaaaatgt ataatagaag cgatagctat ttaggtattt ctatttaaaa
    11941 gttgcgttga tggttgaata taattttgaa ccaaagtgtg tcttttgcaa atagagctcc
    12001 gacatagcag actgtaattc gacttggaac tcccaaggac cgttggtaag aaaaataaaa
    12061 tggacacctg tgggatgtcc aaaaggagta aagatgagta caattaaaat tatggctctt
    12121 gggggtgtgc gggaaaatgg aaaaaacctg tacattgccg aagtgaatga acatattttt
    12181 gttttggatg caggggcaaa gtatcctgag aatgaacagt taggtgtgga tgtagtcgtc
    12241 ccaaatttcg attatttgga agaaaataag catcgtgtag caggggtctt cctaactcac
    12301 gggcatgcag atgctatcgg agcgcttcct tatctcttgg agaaagtgaa agtgccagta
    12361 tttggttcgc acttgacgat cgaattggct aagctacttg tcaaggggaa taatgctact
    12421 aagaaattta atgatttcca tgttatcaat gctgaaactg aaattgattt cggggattca
    12481 gtggtatctt tctttcagac gactcactct attccagaga gtttaggaat tgtcgttaag
    12541 acggatgaag gaaatattgt ctacacaggt gactttaagt ttgaccaggc ggcagataag
    12601 ttttatcgta cggattttgg gcgattggct gaaatcggta acgaaggtgt gttggccctc
    12661 ttgtcagact cagctaacgc agatagcaat gttcaagtag cgagcatgca tgaggctggg
    12721 gaggaaattc tcaatacgat tgctgactgt gacgggcgtg ttattgtggc agcagttgcc
    12781 agcaatattg tacgtattca acagattttt gatgcagcag aagcaactgg tcgtcgtgtc
    12841 gtgttgacag gacatgatgt ggaaaacatt gtccgaacag cgattcaatt gaaaaaactt
    12901 cgtttggtca gcgaacgctt gttggtaaaa ccaaaggata tgaacaagta tgaagaccat
    12961 gaattgatta ttttagaaac tggtcgtatg ggcgagccgt taaatggatt acgtaaaatg
    13021 tctatcggta gacatcgcta cgttgaaata aaagaaggtg atctagttta tattgttacc
    13081 actccaagta tttcaaaaga agcggttgtt gctcgtgtag aaaacttgat ttacaaggct
    13141 ggtggaacag tcaaatccat tacaaaaaaa ctgcgtgtat ctggtcacgg caatgcgcgt
    13201 gatttgcagc tcatgctcaa catcatgaag cctaaatatc ttttcccagt tcaaggggag
    13261 tatcgtcaat tggatgctca cgctaaggct gcgcttgaaa tcggtatgta tccagaaaac
    13321 attatcatcg ttaagcgtgg ggatgtcatg gcttttgaag agggggattt tgtccatagc
    13381 ggagcggttc ctgctggtga tgtcatgatt gacggaaatg ccataggcga tgttggaaat
    13441 atcgtccttc gtgaccgtaa gatcctctca gaagacggta tctttatcgt ggctatcact
    13501 gtcaaccgcc gtgagaaaaa aatcatttct aaagccaagg tcaatactcg tggttttgtc
    13561 tacgtgaaaa agagcaagga catcttgcgt gagtcatcag aattggtgaa tacaacggtg
    13621 gaaaattact tcacaaagga tagctttgac tgggcagagc ttaagagtgc tgttcgcgat
    13681 gatgtagcaa aattcctctt tgaccaaacc aaacgtcgcc cagctatttt accggtgatt
    13741 atggaagtga aatagagttt tataaatgca aagagccgag ggcaactcag gctctttacc
    13801 ataaggagaa gatttatggc aataatgaaa attgaatacc attcagaagc tctagatatg
    13861 tctagacagg ttacggtttt atatccagat cgcaatcgtg tggaaaatcc tgatgacaac
    13921 gatattcctg tcctatatct tttgcacggt atgggaggaa atcaggattc ctggctgaat
    13981 cgttctacag tggaacgatt ggttcgttat accaatctta tcgtggttat ggtcaataca
    14041 gataaaggtt ggtataccaa taccacttac ggtatgaatt acttcgatgc cattgcagta
    14101 gagttgcctc aaattctcaa acgatttttc caaaatatgt ctgacaagcg ggagaaaaat
    14161 tttatcgctg gtttgtctat gggtggttac gggaccttca agattgccat gacgaccaat
    14221 cgtttttcac atgcagcttc gctttcaggg gcattgtatt ttgattttga taatccagcg
    14281 acagcagaat tgggaagtct ttcgtattgg cgaggagtat ttggtgacat ttctgataaa
    14341 cagaatccaa ataatttgtt agaaattact aaacaatccg ataaaaagac caaattttat
    14401 gcctggtgtg gtgaggagga ttttctcttt gaagggcatc aaaaggcagt tggggagttg
    14461 aaagagctgg gatttgatat agaggcaagt ttcggacctg gtaaacatga gtggtactac
    14521 tggaatcagc agattgagaa ggtattggct tggttgccaa ttgatttcaa attggaagaa
    14581 agactgtcct agtttttaag aaaagtttca gaaattatgg ctatactaaa acctatttct
    14641 agaaagtggt atagtctatg aaacttattg gaaatattct acggacgatt tggcggacat
    14701 tttggggtct gatttggtta tcaatggtgt tattggcttg tggtctaggt ctattattct
    14761 attttcaaca ggaagcagcg cctcagatgt tacaaacact agctcaagaa gtgcaattga
    14821 tggtcaaagg acagtctgaa gtgacgattg aagaaggtgt taatactatt aagcacctga
    14881 cgactgatat ggtcaataca gctgatcatg gtcgatggga aagcaatact gcgactgttt
    14941 acattgaaac ccagaaccca acatttgtag ctgcctatga aacagccatt gcaaattgga
    15001 atgcgacagg ggtatttact tttgtgatga caagtgatcc aaatcaggct gatattattg
    15061 ctactgagat gaatgatgga aatacccagg cagcaggcga ggcaaattca acgactaatt
    15121 tattgacgaa ttattatagc ttggtaacgg tgcgtctgaa tagtttttat ttattaaacg
    15181 accaatatgg ctatgatatg gatagaatta tccatacagc tgaacatgaa ttgggtcatg
    15241 cgattggttt ggatcatgag gatagtcaaa catctgtcat ggagtctgca gggtcaaatc
    15301 atggtatcca gcaagctgat attgatgccg tccttgcctt gtattcaaat tagaggagaa
    15361 acatgttacg aacaattaag aacacaatta aacgataccc agagcaagcc ttgcttttca
    15421 tttataatgc aggaatcttt gcttggctac aatcgactag ccattcgata atggaagaaa
    15481 tcggaataga tagtacttgg tttgataaaa tccctgaacc aattaaagtt tggacaggtg
    15541 ccagtctgga gagcatgcag accttgctca attcttcggc ttggggctgg ctgattgtgt
    15601 ccatgatttt gatgatgctt atccgctttg tcaaaggtgt gattaagttt gtcattatgc
    15661 tcatcattat tggtggcggt ctttatctgc tctggcagaa taaggaattg cttagtggat
    15721 tgaaggtata aaaatcgcaa aagaaaaaaa gaagctgagc aagacctctt agatgtctgc
    15781 tcagcttttt t
//
LOCUS       DASFRC010000042        15447 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.042, whole genome shotgun sequence.
ACCESSION   DASFRC010000042 DASFRC010000000
VERSION     DASFRC010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 15447)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15447)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15447
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.042"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            466..774
                     /gene="rpsJ"
                     /locus_tag="U1087_000905"
     CDS             466..774
                     /gene="rpsJ"
                     /locus_tag="U1087_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003046044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HEM4755401.1"
                     /translation="MANKKIRIRLKAYEHRTLDTAAAKIVETATRTGAQVAGPVPLPT
                     ERSLYTIIRATHKYKDSREQFEMRTHKRLIDIVNPTQKTVDALMKLDLPSGVNVEIKL
                     "
     gene            987..1613
                     /gene="rplC"
                     /locus_tag="U1087_000906"
     CDS             987..1613
                     /gene="rplC"
                     /locus_tag="U1087_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002986659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HEM4755402.1"
                     /translation="MTKGILGKKVGMTQIFTESGEFIPVTVIEATPNVVLQVKTVETD
                     GYAAVQVGFDDKREVLSNKPAKGHVAKANTAPKRFIREFKNIEGLEVGQEITVETFAA
                     GDVVDVTGTSKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGPVAPNRVFKGKNLAG
                     RMGGNRVTIQNLEVVQVVPEKNVILIKGNVPGAKKSLITIKSAVKAGK"
     gene            1638..2261
                     /gene="rplD"
                     /locus_tag="U1087_000907"
     CDS             1638..2261
                     /gene="rplD"
                     /locus_tag="U1087_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012677212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HEM4755403.1"
                     /translation="MANVTLFDQTGKQAGEVVLNDAIFGIEPNQAVVFDVIISQRASL
                     RQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLP
                     QKVRRLALKSVYSEKVAENKFVAVNSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGN
                     EFAALSARNIPGVKVATATTASVLDIANADKLLVTQAAISKIEEVLA"
     gene            2261..2560
                     /locus_tag="U1087_000908"
     CDS             2261..2560
                     /locus_tag="U1087_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007518994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HEM4755404.1"
                     /translation="MNLYDVIKKPVITESSMGQLEAGKYVFEVDTRAHKLLIKQAVEA
                     AFEGVKVANVNTINVKPKTKRVGRYVGRTNKVKKAIITLAADSKAIELFATADAE"
     gene            2578..3411
                     /gene="rplB"
                     /locus_tag="U1087_000909"
     CDS             2578..3411
                     /gene="rplB"
                     /locus_tag="U1087_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019790357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HEM4755405.1"
                     /translation="MGIKVYKPTTNGRRNMTSLDFAEITTSTPEKSLLVALKNKAGRN
                     NNGRITVRHQGGGHKRFYRLVDFKRNKDGVEAIVKTIEYDPNRSANIALVHYTDGVKA
                     YIIAPKGLEVGQRIVSGPEADIKVGNALPLANIPVGTVVHNIELKPGRGGELVRAAGA
                     SAQVLGQEGKYVLVRLQSGEVRMILGTCRATVGTVGNEQHGLVNLGKAGRSRWKGIRP
                     TVRGSVMNPNDHPHGGGEGKAPVGRKAPSTPWGKPALGLKTRNKKAKSDKLIVRRRNQ
                     K"
     gene            3513..3794
                     /gene="rpsS"
                     /locus_tag="U1087_000910"
     CDS             3513..3794
                     /gene="rpsS"
                     /locus_tag="U1087_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000533767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HEM4755406.1"
                     /translation="MGRSLKKGPFVDEHLMKKVEAQANDEKKKVIKTWSRRSTIFPSF
                     IGYTIAVYDGRKHVPVYIQEDMVGHKLGEFAPTRTYKGHAADDKKTRRK"
     gene            3812..4156
                     /gene="rplV"
                     /locus_tag="U1087_000911"
     CDS             3812..4156
                     /gene="rplV"
                     /locus_tag="U1087_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018371349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HEM4755407.1"
                     /translation="MAEITSAKATARTVRVSPRKSRLVLDNIRGKSVADAIAILKFTP
                     NKAAGIIEGVLNSAIANAENNFGLEKANLVVSEAFANEGPTLKRFRPRAKGSASPINK
                     RTAHITVVVAEK"
     gene            4169..4822
                     /gene="rpsC"
                     /locus_tag="U1087_000912"
     CDS             4169..4822
                     /gene="rpsC"
                     /locus_tag="U1087_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000529931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HEM4755408.1"
                     /translation="MGQKVHPIGMRVGIIRDWDAKWYAEKEYADYLHEDLAIRNFIKK
                     ELADASTSTIEIERAVNKVIVSIHTAKPGMVIGKAGSNVDALRAQLNKLTGKQVHINI
                     IEIKQPDLDAHLVGESIARQLEQRVAFRRAQKQAIQRAMRAGAKGIKTQVSGRLNGAD
                     IARAEGYSEGTVPLHTLRADIDYAWEEALTTYGKLGVKVWIYRGEVLPARKNTKGGK"
     gene            4826..5239
                     /gene="rplP"
                     /locus_tag="U1087_000913"
     CDS             4826..5239
                     /gene="rplP"
                     /locus_tag="U1087_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003029477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HEM4755409.1"
                     /translation="MLVPKRVKHRREFRGKMRGEAKGGKQVDFGQYGLQATTSSWITN
                     RQIEAARIAMTRYMKRGGKVWIKIFPHKSYTAKAIGVRMGSGKGAPEGWVAPVKRGKV
                     MFEVAGVSEEIAREAFRLAGHKLPVKVKFVKREAE"
     gene            5249..5455
                     /locus_tag="U1087_000914"
     CDS             5249..5455
                     /locus_tag="U1087_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006739716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HEM4755410.1"
                     /translation="MKLQEIKDFVKELRGLSQEELAKKENELKKELFELRFQAAAGQL
                     EQTARLNEVKKQIARIKTVQSETK"
     gene            5479..5739
                     /gene="rpsQ"
                     /locus_tag="U1087_000915"
     CDS             5479..5739
                     /gene="rpsQ"
                     /locus_tag="U1087_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006738952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HEM4755411.1"
                     /translation="MERNNRKVLVGRVVSDKMDKTITVVVETKRNHPVYGKRINYSKK
                     YKAHDENNVAKEGDIVRIMETRPLSATKRFRLVEVVEEAVII"
     gene            5764..6132
                     /gene="rplN"
                     /locus_tag="U1087_000916"
     CDS             5764..6132
                     /gene="rplN"
                     /locus_tag="U1087_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012727667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HEM4755412.1"
                     /translation="MIQTETRLKVADNSGAREILTIKVLGGSGRKFANIGDIIVASVK
                     QATPGGAVKKGDVVKAVIVRTKTGARRADGSYIKFDENAAVIIREDKNPRGTRIFGPV
                     ARELRDGGFMKIVSLAPEVL"
     gene            6271..6576
                     /gene="rplX"
                     /locus_tag="U1087_000917"
     CDS             6271..6576
                     /gene="rplX"
                     /locus_tag="U1087_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HEM4755413.1"
                     /translation="MFVKKGDKVRVIAGKDKGVEAVVVTALPKVNKVIVEGVNIVKKH
                     QKPNSENPQGAIVEKEAPIHVSNVQVLDKNGVAGRVGYKFVDGKKVRYNKKSGEVLD"
     gene            6600..7142
                     /gene="rplE"
                     /locus_tag="U1087_000918"
     CDS             6600..7142
                     /gene="rplE"
                     /locus_tag="U1087_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018376779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HEM4755414.1"
                     /translation="MANRLKEKYLNEVVPALTEQFNYSSVMAVPKVDKIVLNMGVGDA
                     VSNAKNLEKAAQELALISGQKPLITKAKKSIAGFRLREGVAIGAKVTLRGERMYEFLD
                     KLVTVSLPRVRDFHGVPTKSFDGRGNYTLGVKEQLIFPEINFDDVDKTRGMDIVIVTT
                     ANTDEESRALLTGLGMPFAK"
     gene            7157..7342
                     /locus_tag="U1087_000919"
     CDS             7157..7342
                     /locus_tag="U1087_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011245027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HEM4755415.1"
                     /translation="MAKKSMIAKNKRPAKFSTQAYTRCEKCGRPHSVYRKFKLCRVCF
                     RDLAYLGQIPGVTKASW"
     gene            7532..7930
                     /gene="rpsH"
                     /locus_tag="U1087_000920"
     CDS             7532..7930
                     /gene="rpsH"
                     /locus_tag="U1087_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009754342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HEM4755416.1"
                     /translation="MVMTDPIADFLTRIRNANQAKHEVLEVPASNIKKGIATILKNEG
                     FVKNVEFIEDDKQGIIRVFLKYGPNGEKVITNLKRVSKPGLRVYSKREDIPKVLNGLG
                     IAIISTSEGLLTDKQARQKNVGGEVIAYVW"
     gene            8308..8844
                     /gene="rplF"
                     /locus_tag="U1087_000921"
     CDS             8308..8844
                     /gene="rplF"
                     /locus_tag="U1087_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016399261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HEM4755417.1"
                     /translation="MSRIGNKVITLPAGVELAQNNGVVTVKGPKGELTREFPTAIEIR
                     VEGAEVTLHRPNDSKEMKTIHGTSRANLNNMVVGVSEGFKKELEMRGVGYRAQLAGNK
                     LTLAVGKSHPDEVVAPEGITFEVPTPTQIVVSGINKEVVGQTAAYIRSLRAPEPYKGK
                     GIRYVGEFVRRKEGKTGK"
     gene            8933..9289
                     /gene="rplR"
                     /locus_tag="U1087_000922"
     CDS             8933..9289
                     /gene="rplR"
                     /locus_tag="U1087_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018374469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HEM4755418.1"
                     /translation="MISKPDKNKIRQKRHRRVRGKISGTAARPRLNIFRSNTGIYAQV
                     IDDVAGVTLASASTLDKEVSKGTKTEQAVVVGKLVAERAVAKGISEVVFDRGGYLYHG
                     RVKALAESARENGLKF"
     gene            9308..9802
                     /gene="rpsE"
                     /locus_tag="U1087_000923"
     CDS             9308..9802
                     /gene="rpsE"
                     /locus_tag="U1087_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018376782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEM4755419.1"
                     /translation="MAFKDNAVEIEERVVAINRVTKVVKGGRRLRFAALVVVGDRNGR
                     VGFGTGKAQEVPEAIRKAVESAKKNMIEVPMVGTTIPHEVRSEFGGARVLLKPASEGS
                     GVAAGGATRAVIELAGIADVTSKSLGSNTPINIVRAIVEGLKQLKRAEEVAALRGISV
                     SDLA"
     gene            9817..9999
                     /gene="rpmD"
                     /locus_tag="U1087_000924"
     CDS             9817..9999
                     /gene="rpmD"
                     /locus_tag="U1087_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018376783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HEM4755420.1"
                     /translation="MAQIKITLTKSPIGRKPEQRKTVVALGLGKLNSSVVKEDNPAIL
                     GMVNAISHLVTVEEVK"
     gene            10135..10575
                     /gene="rplO"
                     /locus_tag="U1087_000925"
     CDS             10135..10575
                     /gene="rplO"
                     /locus_tag="U1087_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004225266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HEM4755421.1"
                     /translation="MKLHELQPATGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGG
                     GVRPGFEGGQTPLFRRLPKRGFTNINAKEYAIVNLDQLNAFEDGAEVTPVVLIEAGIV
                     KAEKSGIKILGNGELTKKLTVKAAKFSKSAEEAITSKGGSVEVI"
     gene            10589..11899
                     /gene="secY"
                     /locus_tag="U1087_000926"
     CDS             10589..11899
                     /gene="secY"
                     /locus_tag="U1087_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEM4755422.1"
                     /translation="MFFKLLKDALKVKLVRSKILFTIFILFVFRVGTHITVPGVNAKS
                     LEALSNVPFLNMLSLVSGNAMRNFSVFALGVSPYITASIIVQLLQMDILPKFVEWGKQ
                     GEVGRRKLNQATRYISLVLAFVQSIGITAGFNALSGAKLTNMPLNWQTYLLIGSILTT
                     GSIIVTWLGEQISEKGYGNGTSMIIFAGIISSLPGTFHEIYIDRFVNIESSRLGESAI
                     FVAALVVLIFFVVYFTTFVQQAEYKLPIQYTKRAQGAPSSSYLPLKLNPAGVIPVIFA
                     GSITAVPTSLIQYFASQNKSAGWLLTVQEYFDYSTAKGMIVYAGLIIAFTFFYTFVQV
                     NPEKTAESLQKSAAYIHGVRPGNGTEQFLSKLLTRLAVIGALFLSFVALLPILAQNLF
                     GLSSSIAFLGTSLIIVISTSIEGIKQLEGYLLKRKYVGFLEITE"
     gene            11993..12634
                     /locus_tag="U1087_000927"
     CDS             11993..12634
                     /locus_tag="U1087_000927"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001050429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HEM4755423.1"
                     /translation="MNLLIMGLPGAGKGTQAAKIVEKFNVAHISTGDMFRAAMANQTE
                     MGILAKSYIDKGDLVPDEVTNGIVKERLVQDDIKEKGFLLDGYPRTIEQAHALDENLA
                     DLGIELQGVINIEIDPSKLVERLSGRIIHKETGETFHKVFNPPVGDYKEEDFYQREDD
                     KPESVKRRLEVNIAQGQPIIDHYRAKGLVHDIEGDQDIDLVFQAIDTVLSKLQ"
     gene            12756..12974
                     /gene="infA"
                     /locus_tag="U1087_000928"
     CDS             12756..12974
                     /gene="infA"
                     /locus_tag="U1087_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003130554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HEM4755424.1"
                     /translation="MAKEDVIEIEGKVVDTMPNAMFTVELENGHQVLATVSGKIRKNY
                     IRILVGDRVTVELSPYDLTRGRITYRFK"
     gene            12999..13115
                     /gene="rpmJ"
                     /locus_tag="U1087_000929"
     CDS             12999..13115
                     /gene="rpmJ"
                     /locus_tag="U1087_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013773089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HEM4755425.1"
                     /translation="MKVRPSVKPICEYCKVIRRNGRVMVICPANPKHKQRQG"
     gene            13135..13500
                     /gene="rpsM"
                     /locus_tag="U1087_000930"
     CDS             13135..13500
                     /gene="rpsM"
                     /locus_tag="U1087_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008809894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HEM4755426.1"
                     /translation="MARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDVR
                     VKDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNT
                     KNNARTRKGKAVAIAGKKK"
     gene            13518..13901
                     /gene="rpsK"
                     /locus_tag="U1087_000931"
     CDS             13518..13901
                     /gene="rpsK"
                     /locus_tag="U1087_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003130556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HEM4755427.1"
                     /translation="MAKPTRKRRVKKNIESGIAHIHATFNNTIVMITDVHGNAIAWSS
                     AGALGFKGSRKSTPFAAQMASEAAAKSAQEHGLKTVEVTVKGPGSGRESAIRALAAAG
                     LEVTAIRDVTPVPHNGARPPKRRRV"
     gene            13946..14884
                     /locus_tag="U1087_000932"
     CDS             13946..14884
                     /locus_tag="U1087_000932"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000568977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HEM4755428.1"
                     /translation="MIEFEKPTITKIDENKDYGRFVIEPLERGYGTTLGNSLRRVLLA
                     SLPGAAVTLIKIDGVLHEFDTVPGVREDVMQIILNIKGIAVKSYVEDEKKIELDVVGP
                     AEVTAGDILTDSDIEIVNPDHYLFTIADGATFKAVLTVNSGRGYVPAEGNKKDDAPVG
                     TLAVDSIYTPVKKVNYQVEPARVGSNDGFDKLTLEINTNGTIIPEDALGLSARILMEH
                     LGLFTDLTEVAKSAEVMKEAEVASDDRMLDRTIEELDLSVRSYNCLKRAGINTVFDLT
                     EKTEPEMMKVRNLGRKSLEEVKVKLADLGLGLKKDK"
     gene            14899..15285
                     /gene="rplQ"
                     /locus_tag="U1087_000933"
     CDS             14899..15285
                     /gene="rplQ"
                     /locus_tag="U1087_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002887523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HEM4755429.1"
                     /translation="MAYRKLGRTSSQRKAMLRDLTTDLLINESIVTTEARAKEIRKTV
                     EKMITLGKRGDLHARRQAAAFVRNEIASENYDEATDKYTSTTALQKLFSEIAPRYAER
                     NGGYTRILKTEPRRGDAAPMAIIELV"
BASE COUNT         4883 a         2988 c         3347 g         4229 t
ORIGIN      
        1 tcatgagctg aaaatcaaag agcgaattga ggtccggtgg agtgaagcag tctgggggag
       61 actgtttcag cccgagttaa gaaacagcaa ggggaggaat gaatcatgag ccagaaaatc
      121 aaaagggagg ccagatgaaa gatagtttta cagaaagaag taagaagctg agtgaggaat
      181 tagagaggtg tctactggct gataaaaata ttttggtcat attagacata atggatagaa
      241 gtaaatgaag aatcctgaaa taaaagtttt gggatttttt gaatttttga gtaaaaactc
      301 ttgcaatggc aagtagaatc tggtagaatg ttctagtgcc gtaaaaatac ggctgtagct
      361 ttgatgcaag aggttgcgac acgctcggtt gcattgccac gcaacacgtg ttggttttct
      421 tgtggagcta gcctattatg ttaaatagac gaaaaggaga aaaagatggc aaacaaaaaa
      481 attcgcatcc gcttgaaagc gtacgaacac cgtacacttg atacagcagc tgcaaaaatc
      541 gttgaaactg caacacgtac aggtgctcaa gtagcaggtc cagttccgct tccaacagaa
      601 cgtagcctct acacaatcat ccgtgcgact cacaagtata aagactctcg tgagcagttc
      661 gaaatgcgta cacacaaacg tttgatcgac atcgttaacc caactcaaaa aacagttgat
      721 gcgttgatga aattggatct tccaagtggt gtaaacgtag aaatcaaatt gtaatcaagt
      781 agcaaggtaa actaaaagca agtgttcatg atcgaacacg ggctaaactc tgtgtgaaaa
      841 atataaaatt gtctaggctc cctgagccgt cgccgaattt tcctattttc acgttgagtt
      901 tgacgccctt tgtatcttga tttgagcatg aaaaacgctc gttaaaaact ttttaaatac
      961 aaaataagaa aaggaatatt tttctcatga caaaaggaat cttagggaaa aaagtgggaa
     1021 tgactcaaat cttcactgaa tctggtgaat ttatccctgt tactgtcatc gaagcaactc
     1081 caaacgttgt tcttcaagtg aaaacagttg aaactgacgg ttatgcagca gttcaagttg
     1141 gttttgatga caaacgtgaa gtattgagca acaaacctgc caaaggccat gtagctaaag
     1201 ctaacacagc tcctaagcgc ttcattcgtg aattcaaaaa cattgaaggc ttggaagttg
     1261 gacaagaaat tacagttgaa actttcgcag ctggtgatgt tgttgatgta actggtacat
     1321 ctaaaggtaa aggtttccaa ggtgttatca aacgccatgg tcaatcacgt ggtcctatgg
     1381 ctcacggttc tcgttaccac cgtcgtccag gttctatggg tcctgttgca cctaaccgtg
     1441 tattcaaagg taaaaacctt gcaggtcgca tgggcggcaa ccgtgtaaca attcaaaacc
     1501 ttgaagttgt acaagttgtt ccagagaaga acgttatcct tatcaaaggt aacgtaccag
     1561 gtgctaagaa atctcttatc actatcaagt cagcagttaa agctggtaaa taataaggaa
     1621 aggggaaatc agtcgaaatg gcaaacgtaa cattatttga ccaaactggt aaacaagctg
     1681 gtgaagtagt tcttaacgat gcgatttttg gtatcgagcc aaaccaagca gttgtatttg
     1741 atgtgattat cagccaacgt gctagccttc gtcaaggtac tcacgcagtt aaaaaccgtt
     1801 cagcagtctc aggtggcgga cgcaaaccat ggcgtcaaaa aggaactgga cgtgctcgtc
     1861 aaggttctat ccgttcacca caatggcgtg gcggtggcgt agtcttcgga ccaactccac
     1921 gttcatacgc gtacaaactt ccacaaaaag ttcgtcgctt ggcacttaaa tctgtttact
     1981 cagaaaaagt tgctgaaaac aaatttgtag ctgttaactc acttgaattc acagctccaa
     2041 aaactgctga atttgcaaaa gtacttgcag cattgagcat tgattctaaa gtccttgtta
     2101 ttcttgaaga aggcaacgaa ttcgcagctc tttctgctcg taacatccca ggagttaaag
     2161 ttgcaactgc aacaactgca agcgtacttg acatcgcaaa tgcagacaaa cttcttgtaa
     2221 ctcaagcagc tatctctaaa attgaggagg ttcttgcata atgaatttgt atgatgttat
     2281 caaaaaacct gtcatcacag aaagctcaat gggccaactc gaagcaggca agtatgtatt
     2341 tgaagttgac actcgtgcac acaaactctt gattaagcaa gctgttgaag ctgcattcga
     2401 gggtgttaaa gttgcaaatg ttaacacaat caacgtgaaa cctaaaacaa aacgcgtagg
     2461 tcgttatgta ggtcgcacaa acaaagtgaa aaaagcaatc atcacattgg ctgctgattc
     2521 aaaagcgatc gaattgttcg ctacagctga cgctgaataa tcaaaggagg aattaacgtg
     2581 ggtattaaag tttataaacc aacgacaaat ggccgtcgta acatgacttc tttggacttc
     2641 gctgaaatca caacaagcac tccagaaaaa agcttgcttg ttgcattgaa aaacaaagct
     2701 ggtcgtaaca acaatggtcg catcactgtt cgtcaccaag gtggcggtca caaacgtttc
     2761 taccgtttgg tagacttcaa acgtaacaaa gatggcgttg aagcaatcgt taaaactatc
     2821 gagtacgatc caaaccgttc agcaaacatc gctcttgtac actacacaga cggtgttaaa
     2881 gcttacatca ttgctcctaa aggtcttgaa gttggtcaac gcatcgtttc aggtccagaa
     2941 gcagatatca aagttggtaa cgcacttcca cttgcaaaca tcccagtcgg tactgttgtt
     3001 cacaacatcg agttgaaacc aggtcgcggt ggtgagttgg ttcgtgctgc tggtgcatct
     3061 gcacaggttc ttggtcaaga aggtaaatac gttcttgttc gccttcaatc aggtgaagtt
     3121 cgtatgatcc ttggtacttg ccgtgctact gttggtactg taggtaacga acaacatggc
     3181 cttgttaacc ttggtaaagc aggtcgtagc cgttggaaag gtatccgtcc aacagttcgc
     3241 ggttctgtaa tgaaccctaa cgatcaccca cacggtggtg gtgaaggtaa agcaccagtt
     3301 ggtcgtaaag caccatctac accatggggt aaaccagctc ttggtttgaa aactcgtaac
     3361 aagaaagcta aatctgacaa acttatcgtt cgtcgtcgca accaaaaata atctattctt
     3421 agttgcttag cattctatat catccgccaa ctcggtagcc cgcaaagcgg gcaagccgct
     3481 gtggtacata ttttaaagga gaaaacacta aaatgggacg tagtcttaaa aaaggacctt
     3541 tcgtcgatga gcatttgatg aaaaaagttg aagctcaagc aaacgacgaa aagaaaaaag
     3601 taattaaaac ttggtcacgt cgttcaacga ttttcccaag tttcatcggt tatacaatcg
     3661 cagtttacga tggacgtaaa cacgtacctg tatacattca agaagacatg gtaggtcaca
     3721 aacttggtga atttgcacca actcgtactt acaaaggtca tgctgctgac gacaagaaaa
     3781 ctcgtcgtaa ataatttagg aggaaaacac aatggcagaa attacttcag ctaaagcaac
     3841 tgctcgcaca gtacgtgttt cacctcgtaa atcacgtctt gtcttggata acatccgtgg
     3901 caaaagcgta gcagacgcaa tcgcaatctt gaaattcaca ccaaacaaag ctgcaggcat
     3961 tatcgaggga gttttaaact cagcaatcgc taacgctgaa aacaactttg gtttggaaaa
     4021 agctaacttg gtagtcagcg aagcattcgc aaacgaagga ccaacgttga aacgtttccg
     4081 tccacgtgcg aaaggttcag cttcaccaat taacaaacgc acagctcaca tcactgtagt
     4141 tgtggcagag aaataaggag gtaaaaacgt gggtcaaaaa gtacatccaa ttggtatgcg
     4201 tgttggcatc atccgtgatt gggatgctaa atggtatgct gaaaaagaat acgcggatta
     4261 ccttcatgaa gatcttgcaa tccgcaactt tatcaaaaaa gaattggctg atgcgtcaac
     4321 atcaacaatc gaaatcgaac gtgctgtaaa taaagtaatt gtttctatcc acactgctaa
     4381 gccaggtatg gttatcggta aagctggtag caacgttgat gcacttcgtg ctcaattgaa
     4441 caaattgact ggtaagcaag tacacatcaa catcatcgaa atcaaacaac ctgatttgga
     4501 tgcacacctt gttggtgagt caatcgctcg tcaattggag caacgtgtgg cattccgccg
     4561 tgctcaaaaa caggctatcc aacgtgcaat gcgcgctggt gcaaaaggta tcaaaacaca
     4621 agtttctggt cgtttgaacg gtgctgatat tgcccgtgca gaaggctact cagaaggaac
     4681 tgttcctctt catacacttc gtgcggatat cgactacgct tgggaagaag ctttgacaac
     4741 ttacggtaaa cttggtgtta aagtatggat ctaccgtggt gaagttcttc cagctcgtaa
     4801 aaacactaaa ggaggtaaat aacaaatgtt agtacctaaa cgtgtaaaac accgtcgtga
     4861 attccgtgga aaaatgcgcg gtgaagctaa aggtggaaaa caagtagact ttggtcaata
     4921 cggtcttcaa gcaactacta gctcatggat tacaaaccgc caaatcgaag ctgcccgtat
     4981 cgctatgacg cgttacatga aacgtggtgg taaagtttgg atcaagatct tcccacacaa
     5041 atcatacact gctaaagcta tcggtgtacg tatgggttct ggtaaaggtg ctcctgaagg
     5101 ttgggtagct ccagttaaac gcggtaaggt tatgtttgaa gtagctggcg tttctgaaga
     5161 aatcgctcgc gaagcattcc gccttgctgg tcacaaattg ccagttaaag ttaaattcgt
     5221 aaaacgtgaa gcagaataag gagaagacat gaaacttcaa gaaattaaag attttgtaaa
     5281 agaacttcgt ggcctttctc aagaagaact tgctaagaaa gaaaacgaat tgaagaaaga
     5341 actcttcgaa cttcgtttcc aagctgctgc tggtcaactt gagcaaactg ctcgtttgaa
     5401 cgaagtgaag aaacaaattg cacgtatcaa aactgtgcaa tctgaaacta aataatagat
     5461 tgggaaagga gaatttcaat ggaacgcaat aatcgtaaag ttcttgttgg acgcgtagta
     5521 tctgacaaaa tggacaaaac aatcacagtt gtagttgaaa ctaaacgtaa ccacccagtc
     5581 tatggtaaac gtattaacta ctctaaaaag tacaaagctc atgatgaaaa caatgttgct
     5641 aaagaaggcg atatcgttcg tatcatggaa actcgcccac tttcagctac aaaacgtttc
     5701 cgtcttgtag aagttgtgga agaggcagtt atcatttaat caacctgaaa ggagaaaatt
     5761 gacatgattc aaacagaaac tcgtttgaaa gttgctgaca acagtggcgc acgtgaaatc
     5821 ttgacaatca aagttcttgg tggttcagga cgtaaattcg cgaacatcgg cgacatcatc
     5881 gttgcttcag taaaacaagc tactcctggt ggtgcggtta aaaaaggtga cgttgttaaa
     5941 gccgttatcg ttcgtactaa gacaggtgct cgtcgtgctg atggttcata catcaaattc
     6001 gatgagaatg ctgcagttat catccgtgaa gacaaaaacc ctcgcggaac tcgtatcttt
     6061 ggcccagtgg cacgcgaatt gcgtgatggc ggtttcatga aaatcgtttc attggcacca
     6121 gaagtacttt aatcaaatag ttttaggaaa tttgttacaa actaacgaag tctgtgacgg
     6181 gtttagtaaa ctagaaaaca aactaagtcc cctggttaaa tcactaacca gggtgcccat
     6241 tagggcgtaa gaaattatag gagaaatcaa atgtttgtaa aaaaaggcga taaagttcgc
     6301 gtaatcgctg gtaaagacaa aggcgttgaa gcagttgtcg taacagcact tccaaaagta
     6361 aacaaagtta ttgttgaagg tgttaacatc gttaagaaac accaaaaacc aaacagcgaa
     6421 aaccctcaag gcgctatcgt tgaaaaagaa gctccaatcc atgtgtcaaa cgttcaagtt
     6481 cttgacaaaa atggtgttgc aggacgcgtt ggttacaagt ttgtagacgg caaaaaagtt
     6541 cgctacaaca aaaaatcagg cgaagtgctt gattaatcac gaaggaaagg agaagtataa
     6601 tggcaaatcg tttaaaagaa aaatatctta atgaagtagt tcctgctttg actgaacaat
     6661 ttaactattc ttcagttatg gctgtgccaa aagttgataa gatcgttttg aacatgggtg
     6721 ttggtgacgc tgtttctaac gctaaaaacc ttgagaaagc tgctcaagaa ttggctttga
     6781 tctcaggtca aaaaccactt atcactaaag ctaagaaatc aatcgccggc ttccgtcttc
     6841 gtgagggtgt tgcgatcggt gcgaaagtaa ctcttcgtgg cgaacgtatg tatgaattct
     6901 tggacaaatt ggttacagtt tcacttccac gtgtacgtga cttccacggt gtaccaacta
     6961 agtcatttga cggacgtggt aactacacac ttggtgtgaa agagcaattg atcttcccag
     7021 aaatcaactt cgacgatgtt gataaaactc gcggtatgga tatcgttatc gttacaactg
     7081 ctaacactga cgaagaatca cgtgcattgc ttactggcct tggtatgccg tttgcaaaat
     7141 aagagggaga gaataaatgg ctaaaaaatc aatgatcgct aagaacaaac gcccagctaa
     7201 gttctctaca caagcttaca cacgctgtga aaaatgtgga cgtccacact cagtttaccg
     7261 caaattcaaa ttgtgccgtg tatgcttccg cgacttggct taccttggac aaattcctgg
     7321 cgtaacaaaa gcttcttggt aagaataact tgctattccg ttgcaattcg tcgtcagcac
     7381 ttcttgccgt acgctagtac tgcctgcgaa gtgcttccta gacttgctta ggactagcaa
     7441 cttattctat atacacttat cactagtccg caaggacatc attaactagc aagtgactag
     7501 atcaaactac tagtaagagg agaaacaaca aatggttatg actgacccaa ttgcagattt
     7561 tttgacacgt attcgtaacg ctaaccaagc taaacacgaa gtgcttgaag ttcctgcatc
     7621 aaacatcaaa aaaggtattg ctacaatcct taaaaacgaa ggttttgtga aaaacgttga
     7681 attcatcgaa gatgacaaac aaggtatcat ccgcgtattc ttgaaatacg gaccaaacgg
     7741 tgaaaaagtt atcactaact tgaaacgcgt ttcaaaacca ggtcttcgtg tttactcaaa
     7801 acgtgaagat attccaaaag ttcttaacgg acttggtatc gcaatcatct caacatcaga
     7861 aggtcttttg actgacaaac aagctcgtca aaagaacgtt ggtggtgagg ttatcgcata
     7921 cgtttggtaa tcttttagct tccaatttcg tcatgtgcct gtgttagagc gtcttgacat
     7981 actcaagtat ggtctgcgtc gctctgcctt gtcacattta gaaattgaaa cctaaaagca
     8041 tgatacaaac gcgagaggac tggttcttcg ttcgtgttca aatcagacgt actgattatt
     8101 tagtatcatg caaccaaact agaacaagat tcactaattg aacacgccta caactctttg
     8161 aaaaaagaaa aactcccctt agatgctcaa gcatcagcag tcgagtttcc tatttttctt
     8221 tgagttgctt aacggctttg tatcttgttc accccgtgaa aactagtcgc ttgacggctt
     8281 gataatttaa caggagaatt aaaaaatatg tcacgtattg gtaataaagt aattacattg
     8341 cctgctggcg ttgagcttgc tcaaaacaac ggcgtggtaa ctgtaaaagg acctaaaggg
     8401 gaattgactc gtgaattccc aactgctatt gaaatccgtg tggaaggtgc agaagtaact
     8461 cttcaccgtc caaacgattc aaaagaaatg aagactattc acggtactag ccgtgctaac
     8521 ctcaacaaca tggttgttgg tgtttctgaa ggcttcaaaa aagaacttga aatgcgtggt
     8581 gtcggttacc gtgctcaatt ggctggtaac aaattgacac ttgctgttgg taaatcacat
     8641 ccagatgaag tggttgcacc agaaggtatt acatttgaag ttccaacacc aacacaaatc
     8701 gtcgtgtctg gtatcaacaa agaagttgtt ggtcaaacag cagcttacat ccgtagcctt
     8761 cgcgctcctg agccatacaa aggtaaaggt atccgctacg ttggtgaatt cgttcgccgt
     8821 aaagaaggta aaacaggtaa ataatagctt gctgaggtgg cttagccacc tggctgacta
     8881 tttctcaaat tgtttcgcaa gaaacagaat catacattaa gaggtgaata ttgtgatttc
     8941 aaaaccagat aaaaacaaaa tccgccaaaa acgccaccgt cgcgttcgtg gtaaaatctc
     9001 tggaactgct gctcgcccac gtttgaacat tttccgttct aatacaggca tctacgctca
     9061 agtgattgat gacgtagcgg gtgtaacgct cgcaagcgct tctactcttg ataaagaagt
     9121 ttcaaaaggt actaagacag aacaagctgt tgttgtaggt aaactcgttg ctgaacgcgc
     9181 ggtagctaaa ggtatttctg aagtggtctt tgaccgcggt ggatatctct atcacggacg
     9241 tgtgaaagct ttggctgaat cagctcgtga aaacggattg aaattctaat agggaggaca
     9301 ctaagaaatg gcattcaaag ataacgcagt tgaaattgaa gaacgcgtag tagccatcaa
     9361 ccgtgttaca aaagttgtta aaggtggacg tcgtcttcgt tttgcagctc ttgtggttgt
     9421 tggtgaccgt aacggtcgcg taggtttcgg tactggtaaa gctcaagaag taccagaagc
     9481 tatccgtaaa gcagttgaat ctgctaagaa aaacatgatt gaagtaccaa tggttggtac
     9541 aacaatccct cacgaagttc gctcagaatt tggcggcgct cgtgtattgt tgaaacctgc
     9601 ttcagaaggt tctggggttg ctgccggtgg tgcaactcgt gccgtaatcg aattggcagg
     9661 tatcgcagat gtgacttcta agtcacttgg ttcaaacaca ccaatcaaca tcgttcgcgc
     9721 aatagttgaa ggtttgaaac aattgaaacg tgctgaagaa gtggctgcac ttcgtggcat
     9781 ctcagtttct gatttagcat aagaaaggag atactcatgg ctcaaattaa aatcactttg
     9841 actaagtctc caatcggtcg caaaccagaa caacgtaaaa cagttgttgc acttggactt
     9901 ggtaaattga actcttcagt tgttaaagaa gataacccag ctattcttgg aatggttaac
     9961 gctatctctc acttggtaac tgtagaagaa gttaaataat ctaacaaata gactaagtcg
    10021 catagagaaa tctttgcgac ttctagtcca ttttacatat ttacatacag cgagtttgtg
    10081 gaggaagact cttgtacttc acaggcgcta gcatataaaa gaggagaaat aataatgaaa
    10141 cttcatgaat tacaacctgc tacaggttct cgtaaagtcc gcaaccgtgt aggtcgtggt
    10201 acatcatcag gtaacggtaa aacatctggc cgtggtcaaa aaggccaaaa agctcgtagc
    10261 ggtggcggtg ttcgcccagg ttttgaaggt ggacaaactc cattgttccg tcgtcttcca
    10321 aaacgtggat ttacaaatat caacgctaaa gagtacgcaa tcgttaacct tgatcaattg
    10381 aacgcttttg aagatggtgc agaagtaaca ccagttgtgc ttatcgaagc tggaatcgtt
    10441 aaagctgaaa aatcaggaat taaaattctt ggtaacggtg aattgacgaa gaaattgaca
    10501 gttaaagctg ctaaattctc taaatcagct gaagaagcaa tcacttctaa aggtggctca
    10561 gtagaagtca tctaagaggt gacagcctat gttttttaaa cttttaaaag atgccttaaa
    10621 ggtaaaattg gtacgtagta aaattctatt tactatcttt atcctttttg tcttccgcgt
    10681 aggaacccac attacagtac caggagtaaa cgcaaagagt cttgaagcct tgtcaaatgt
    10741 tccatttttg aacatgttga gcttggtttc gggaaatgct atgcgtaatt tctcagtttt
    10801 cgcactaggt gttagtcctt atattacagc ttccatcatt gttcaacttt tgcaaatgga
    10861 tattttacct aaatttgttg aatggggtaa gcaaggtgaa gttggtcgtc gtaaactgaa
    10921 tcaggcaaca cgctacattt ctttggtact ggcatttgtt caatctattg gtattacagc
    10981 aggctttaat gccttgtctg gtgcaaagtt gaccaatatg ccattaaatt ggcaaacata
    11041 tttgttgatt ggatcaattt tgacaacagg ttcaattatt gtaacctggt tgggggaaca
    11101 aatttctgaa aagggctatg gtaatggtac atcaatgatc atcttcgcgg gtatcatttc
    11161 atcactacca ggaacttttc acgagattta cattgatcgc tttgttaata ttgaatcaag
    11221 tcgtttgggg gagtcagcaa tctttgttgc tgcactcgtc gtattaatat tctttgttgt
    11281 gtattttaca acttttgtac aacaagcaga atataaatta ccaattcaat atacaaaacg
    11341 tgcacaagga gcaccttcta gctcatattt accgctgaaa ttgaatccag caggagttat
    11401 tccagtaatc tttgcaggct caatcactgc agttccaact tctttgattc aatatttcgc
    11461 aagtcaaaat aagagtgccg ggtggttatt gacggttcag gaatactttg attactcaac
    11521 tgctaaaggt atgattgtat atgcaggttt aattattgcc tttacattct tctacacctt
    11581 tgttcaagta aatcctgaga agactgcaga aagccttcag aaaagtgcag cctatatcca
    11641 tggagttcgt cctggtaatg gcactgaaca gtttttgtca aaattattga caagattggc
    11701 agtaatcggt gcactcttct tgagttttgt agctttgctg cctatccttg cgcaaaatct
    11761 ctttgggctt tcttcaagca ttgcgttcct tggtacaagt ttgattatcg taatctctac
    11821 aagtatcgaa ggcatcaagc aattagaagg ctaccttctt aagagaaaat atgtaggttt
    11881 cttagaaatt acagaataga atataggttg acctagtcaa ccttctattt tgtttttaga
    11941 taagtttgtc aataatggca aatttatgtg aaaacaaaat aaggagtttg tcatgaatct
    12001 tttaattatg ggtttaccag gtgctggtaa agggacacaa gcggccaaga ttgttgagaa
    12061 attcaatgtt gctcatatct caacaggaga tatgttccgt gcagcaatgg ccaatcagac
    12121 tgaaatgggt attcttgcca agtcgtacat tgataagggt gacctcgttc ctgatgaagt
    12181 tactaatggc attgtcaaag aacgtttggt tcaggatgac atcaaggaaa aaggcttttt
    12241 actagatggc tatcctcgta cgattgaaca agctcatgcc ttggatgaaa atttggctga
    12301 cttaggaatt gagttgcaag gtgttatcaa tattgagatt gatccttcaa aattggtaga
    12361 gcgtctcagc ggtcgtatta ttcataaaga aaccggagag actttccaca aagtattcaa
    12421 tccacctgtt ggagactaca aagaggaaga cttctatcaa cgtgaagatg acaagccaga
    12481 atctgtcaaa cgtcgtttag aggtcaatat cgcacaagga cagccaatca ttgatcatta
    12541 tcgtgcaaaa gggctggtcc atgatattga aggtgaccaa gacattgacc ttgttttcca
    12601 agcaattgat acagtactat caaaattgca ataaactaat agatttggct tgcatttttt
    12661 atacaaagat gataaaatag cctagtctga cttataattg ttacctctgt gttcagagga
    12721 catcaaatcg atatttagag aggggttact tttgcatggc aaaagaagat gtgattgaaa
    12781 ttgaaggcaa agtagtcgat acaatgccaa atgctatgtt tactgttgag ttggagaacg
    12841 gacaccaagt ccttgcaact gtttcaggta aaatccgtaa aaactacatt cgtattttgg
    12901 tcggtgaccg cgtaactgtt gagcttagtc catacgactt gacacgtgga cgtatcacat
    12961 accgctttaa atagtcgaaa tacttggagg gattaaacat gaaagtaaga ccatcggtca
    13021 aaccaatttg cgaatactgc aaagttattc gtcgtaatgg tcgtgttatg gtgatttgcc
    13081 cagcaaaccc taaacacaag caacgtcaag gttaagaaat agaaaggaga aaacatggct
    13141 cgtattgctg gagttgacat tccaaatgac aaacgtgtag ttatttcatt aacttatgtt
    13201 tatggtatcg gtcttgcaac atctaaaaaa attcttgcag ctgcaggtat ttcagaagat
    13261 gtacgcgtga aagatttgac atcagatcaa gaagatgcta ttcgtcgtga agttgatgca
    13321 atcaaagttg aaggtgacct ccgtcgtgaa gttaacttga acatcaaacg tttgatggaa
    13381 atcggttcat accgtggtat ccgtcaccgt cgtggacttc ctgtccgtgg acaaaacact
    13441 aaaaacaatg cccgcactcg taaaggtaaa gctgttgcga ttgcaggtaa gaaaaaataa
    13501 tataggaggt agaaaaattg gctaaaccaa cacgtaaacg tcgtgtgaaa aagaatatcg
    13561 aatctggtat tgctcatatt cacgctacat ttaataacac tattgttatg attactgatg
    13621 tgcatggtaa cgctattgct tggtcatcag ctggtgctct tggtttcaaa ggttctcgta
    13681 aatctacacc attcgcagcc caaatggctt cagaagcagc tgctaaatct gcacaagaac
    13741 acggtcttaa aacagttgaa gttaccgtta aaggcccagg ttcaggtcgt gagtctgcta
    13801 tccgcgctct tgctgccgct ggtcttgaag taacagcaat tcgtgatgtg actcctgtac
    13861 cacacaatgg tgctcgtcct ccaaaacgtc gccgtgtata atcatacatt ccatacacag
    13921 cttttcgttt aagagggagt aagaaatgat tgagtttgaa aaaccaacaa taacaaaaat
    13981 tgatgaaaat aaagattacg gcagatttgt gatcgaacca ttagaacgtg gttacggtac
    14041 aactcttggt aactctcttc gtcgtgtact tcttgcctca cttccaggtg ctgcagtaac
    14101 attaattaaa attgatggtg tactccacga attcgacaca gttccaggtg ttcgtgaaga
    14161 tgttatgcaa attattctta acatcaaagg cattgctgta aaatcttatg tcgaagacga
    14221 aaagaaaatt gaacttgatg tagtaggtcc agctgaagta acagcaggag acattcttac
    14281 agatagtgac attgaaattg taaaccctga ccattatctc tttaccattg ctgatggtgc
    14341 cacttttaaa gctgttttga ctgtcaattc aggtcgtggt tatgtaccag ctgagggtaa
    14401 taagaaagat gatgcaccag tgggaacact tgctgtagat tctatctata cgccagtgaa
    14461 gaaagtcaat tatcaagttg aaccagctcg tgttggtagc aacgatggtt ttgacaaatt
    14521 aacacttgaa atcaacacaa atggcaccat tattccagaa gatgctttag gtctttctgc
    14581 acgcattttg atggagcact taggtctctt cactgacttg actgaagttg caaaatctgc
    14641 agaagtgatg aaagaagctg aagtggcttc agatgatcgt atgcttgatc gtacgattga
    14701 agaattggat ctatctgttc gctcatataa ctgtctgaaa cgcgcaggca ttaacactgt
    14761 attcgacttg acagagaaga ctgagccaga aatgatgaaa gtgcgcaatc ttggtcgcaa
    14821 gagtcttgaa gaagttaaag ttaaattggc tgatcttggt ctaggattga aaaaagataa
    14881 ataatatagg aggaaatcat ggcataccgt aaactaggac gcactagctc acaacgtaaa
    14941 gcaatgttgc gcgatttgac aactgacctt ttgatcaacg aatcaatcgt tacaactgaa
    15001 gctcgtgcta aagaaatccg taaaacagtt gaaaaaatga tcacacttgg taaacgtggt
    15061 gatttgcacg cacgtcgtca agcagcagca tttgttcgta acgaaattgc atctgaaaac
    15121 tatgatgaag caactgataa gtacacttct actacagcac ttcaaaaatt gttctctgaa
    15181 attgcacctc gttatgcaga acgtaatggt ggatatactc gtatcctcaa aactgaacca
    15241 cgtcgtggtg atgctgcacc aatggcaatt atcgaacttg tataagatca tcaattttgt
    15301 tgagtgttat gatgatggaa tcctattctg attcttagtc tagctctggt ctaccgctga
    15361 gcttgtctca gcggtaacac tcatcatgtt gattggacgc ttgtttacga aattactcta
    15421 agatagaata atttcgtaag caggcgt
//
LOCUS       DASFRC010000043        14375 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.043, whole genome shotgun sequence.
ACCESSION   DASFRC010000043 DASFRC010000000
VERSION     DASFRC010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 14375)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14375)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14375
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.043"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            91..624
                     /locus_tag="U1087_000934"
     CDS             91..624
                     /locus_tag="U1087_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000775318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF402 domain-containing protein"
                     /protein_id="HEM4755430.1"
                     /translation="MKLPKEGDFITIQSYKHDGEIHRTWRDTMVLKTTENAIIGVNNH
                     TLVTENDGRRWVTREPAIVYFHKKYWFNIIAMIRENGVSYYCNLASPYVLDNEALKYI
                     DYDLDVKVFADGEKRLLDVDEYERHRKAMKYSDDIDFILKENVKILVDWINNQRGPFS
                     PAYVNIWYKRYLELRSR"
     gene            682..999
                     /locus_tag="U1087_000935"
     CDS             682..999
                     /locus_tag="U1087_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF960 domain-containing protein"
                     /protein_id="HEM4755431.1"
                     /translation="MAFEQTNGRYASFGVVTSLPGEVIDSFWYVIDHYLKGVIPLKSV
                     IHFSIKNRRGKITLVFSQEGYKNVLAVDLSSRFDPFYPSTILVMDKQGKETITLPDEV
                     TLL"
     gene            1099..1830
                     /locus_tag="U1087_000936"
     CDS             1099..1830
                     /locus_tag="U1087_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM4755432.1"
                     /translation="MVSQTVEKPLYLQLVDELEVAIRERMAPNDKLFSERELTQVYGV
                     SRITVRLALQELEKRGLVYKKHGKGTYVSEISDTAVDLSQAYSFTEQMKKIGKVPRTS
                     ILSFELVKASDYIAQHLQLSQGEEVFVVERLRLADEIPMMLERTYVPASLFPGLAAQR
                     MKSTPLYEIFSEDYHQVIRLAEEEFYASIALDNEAKILGIPSNSPVLHLVRKTYNDKN
                     RIIEFTFSIARADQFRYKITHQRGY"
     gene            complement(1970..2680)
                     /locus_tag="U1087_000937"
     CDS             complement(1970..2680)
                     /locus_tag="U1087_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM4755433.1"
                     /translation="MKVPKYQLIQNDLRQQIVSGKFENGDKFYTESELTKLFNVSSIT
                     VIRAVNELVKDGYLVRQQGKGTFVSRSRKGRLVEFSDIEIFPMDKDKVTVLSCEKGNK
                     PDILEKLNLDKNEFYYKIVRVRAAEDTPYIFHNSYIPQRYIQNPDAPLEHYQSIYQRF
                     KLDYNIHMSEEPFVETNEIVSPCPKEVATHLKLKATEPAVLQNKTTTNSTSGEVMEYT
                     ETYKHWKYYKFEITANHR"
     gene            2887..4659
                     /locus_tag="U1087_000938"
     CDS             2887..4659
                     /locus_tag="U1087_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase"
                     /protein_id="HEM4755434.1"
                     /translation="MKEFYIGDQFYLDGEPFKILSGAIHYFRVHPDDWYHSLYNLKAL
                     GFNTVETYVPWNMHEPRKGEFCYEGILDIERFLKLAQELGLYAIVRPSPYICAEWEWG
                     GLPAWLMKEELRVRSSDSVYLQHLDEYYASLIPKLAKLQLAQGGNVLMFQVENEYGSY
                     GEEKEYLRSVAGLMRKHGLTAPLFTSDGSWRATLRAGTLIEDDVFVTGNFGSKARENF
                     ANMTAFFNEHQKNWPLMCMEFWDGWFNRWGDEIIRREPEEMVDSVMECIELGSVNLYM
                     FHGGTNFGFMNGCSARGQIDLPQVTSYDYDAILDEAGNPTKKFYILQQRLKEVYPELE
                     YAEPLVKEAKAFSDVSLHDKVSLFVTLENVSDCVKGFYPKNMEELDQSTGYILYRTEL
                     ERDKTEAERFRVVDARDRIQIYADGKFVATQYQTEIGDDVELDFKDDKLTLDILVENM
                     GRVNYGHKLTAPTQSKGLGRGAMADLHFIGHWETYPLHLESVEDLDFSKGWEEGQAAF
                     YRYQFELDELADTYLDMTGFGKGVVFVNNVNIGRFWEKGPILYLYIPKGYLKKGENEI
                     VVFETEGKYREKISFSQEPVYKEV"
     gene            4715..5200
                     /locus_tag="U1087_000939"
     CDS             4715..5200
                     /locus_tag="U1087_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system
                     mannose/fructose/N-acetylgalactosamine-transporter subunit
                     IIB"
                     /protein_id="HEM4755435.1"
                     /translation="MAIIATRIDGRLIHGQVANLWTTKLNISRIMVIDDAVAQNDIEK
                     QGLKLACPPGVKLSILPIEKAANNIKEGKYDAQRLLIVARRPENFLRLVEYGVELAEL
                     NVGNMSQSPETRSVTRSINVVDKDIADFDALAAKGVKLFAQMVPGDSPKDFMPLLDKV
                     R"
     gene            5239..6135
                     /locus_tag="U1087_000940"
     CDS             5239..6135
                     /locus_tag="U1087_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS
                     mannose/fructose/sorbose/N-acetylgalactosamine transporter
                     subunit IIC"
                     /protein_id="HEM4755436.1"
                     /translation="MMQWWQILLLTLYSAYQICDELTIVSSAGSPVFAGFISGLIMGD
                     MATGLAIGASLQLMVLGVGTFGGASRIDATSGAVLATAFSVSQGIDPELAVSTIAVPV
                     AALLVYTDIAGRFSTTFFAHRVDAAIERFDYAGIERNYLLGAIPWALSRALPVFLALA
                     FGGGFVDAMVKTIEQYQWIANGLTLAARMLPGLGFAILLHYLPLKRNLHYLAIGFALT
                     AMLTVLYGNVSALGGAVAGIVGTLPEDAGVAFVNNFKGLSMIGIAIVGAFLSVLHFKN
                     SQKVTVVAPSNSESGEIEDDEI"
     gene            6122..6940
                     /locus_tag="U1087_000941"
     CDS             6122..6940
                     /locus_tag="U1087_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009754896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HEM4755437.1"
                     /translation="MTKSNYKLTKEDFNQINKRSLFTFQLGWNYERMQASGYLYMILP
                     QLRKMYGDGTPELKEMMKLHTQFFNTSPFFHTIITGIDLALEESDGVASKDAVNGIKT
                     GLMGPFAPIGDSIFGSLVPAIMGTVAATMGKEGSPVGIFLWVAVAVAYDIFRWKQLEV
                     AYKEGTKLITTMRDKLTALVDAASVMGVFMMGALIATMINFEVTWAPNVGEKVIDIQD
                     LLNTIFPRLVPAVFTGFVFWLLGRRGMTSTKAILIIIGLAVGLSAIGHFVFGMA"
     gene            6940..7335
                     /locus_tag="U1087_000942"
     CDS             6940..7335
                     /locus_tag="U1087_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM4755438.1"
                     /translation="MTRSLVLVSHGIFCEELKKSTEMIMGPQEDIYTVALLPEEGPED
                     FQKKFEETIANLDDFVVFADLLGGTPANVVSRKLIEGGQFDLYAGMNMPMVIGFLNGV
                     LLGEAVDYVEFGTSNLVHVNSLLTSDEDE"
     gene            7564..8565
                     /locus_tag="U1087_000943"
     CDS             7564..8565
                     /locus_tag="U1087_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose mutarotase"
                     /protein_id="HEM4755439.1"
                     /translation="MIEVKTFGEKAKLYCLENKNGMQVTLTDFGARVVGVFLPVEEGG
                     NLRNVSLGAGAAEEYLQTDPYPGATIIPVAGRISDAQVEIGGHVYPLTENEPGRTLHG
                     GIGTANEQYWDAELDHERNQVTFGITLKDGFNGFPGDVMVKAIYRLTDANELMVEYRA
                     VSDKDTIFNPTNHIYFNLTGDFQRSVAEHRIKIAANHYAPLGEDNLPTGVLEDVTGTP
                     FDFRDFAPFAQGFDGQYPQNVLVKGYDHPWLLEEVDIPVEVLSPDGKIGLSVKTNQPA
                     VVIYTYNFPVEALACYHGVFSLECQALPNACNVDGFGSILLEQGEEFLSKTTYRFTW"
     gene            8672..8929
                     /locus_tag="U1087_000944"
     CDS             8672..8929
                     /locus_tag="U1087_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011074664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1912 family protein"
                     /protein_id="HEM4755440.1"
                     /translation="MMTKEQEFLKEFEAWVNTQVMVNEMAVEESRRVLEEDKDERAAD
                     AYIRYESKLDAYRFIQGKFANYHAGKGFHDLPDELFGQRHY"
     gene            8944..9330
                     /locus_tag="U1087_000945"
     CDS             8944..9330
                     /locus_tag="U1087_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HEM4755441.1"
                     /translation="MAKKKVNRKKQLKKQLADLKRAGRVGLERAAEVVETVAHKAEAV
                     VEHAVEQVKEVVAEVTSSATSLEDFLALPELEGIAAARLETFYEAGIQSVADFANHTE
                     KELLALKGIGPATIKQLKEKGIELKA"
     gene            9572..9961
                     /locus_tag="U1087_000946"
     CDS             9572..9961
                     /locus_tag="U1087_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM4755442.1"
                     /translation="MLHHVEIYVSNLETSRAFYDFLLTKLGYSLYQEWEEGLSYKKAE
                     QYLVFVQTPEDFLEAGYHRCRTGLNHLAFHVGTPDDVDKWRQEFLARRVKLLYDDRYP
                     HAGGSDHYALYLEDPDGIKIELVGEAT"
     gene            9958..10530
                     /locus_tag="U1087_000947"
     CDS             9958..10530
                     /locus_tag="U1087_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001021306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEM4755443.1"
                     /translation="MNLVIIGAQASGKMTIGQEVERLTDLVLFHNHESIDFVTKFFPM
                     SDEARELINDIRMKFFETSAKTDLGLIFTVVIDFNDPADISFLEQIQAIYHSRNQAVL
                     FIELETDLQERLRRNVTENRLQHKPWKRNIEWSEKDILDTMKFANFNPEFAPKQLDHY
                     LKINNTRLSANDVAQLIIQKMEELEQEQTK"
     gene            10648..13299
                     /locus_tag="U1087_000948"
     CDS             10648..13299
                     /locus_tag="U1087_000948"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014623308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEM4755444.1"
                     /translation="MSKELSPKYNPAEVEAGRYQTWLDQDVFKPSGDAEAKPYSIVIP
                     PPNVTGKLHLGHAWDTTLQDIIIRQKRMQGFDTLWLPGMDHAGIATQAKVEERLREQG
                     VTRYDLGREKFLDKVWEWKDEYAATIREQWGKLGLSLDYQRDRFTLDEGLSKAVRKVF
                     VELYKKGWIYRGEFIINWDPAARTALSDIEVIHKDVEGAFYHMNYMLEDGSRALQVAT
                     TRPETMFGDVAVAVNPEDPRYKDLIGKNVILPIVNKLIPIVADEHADPEFGTGVVKIT
                     PAHDPNDFLVGQRHNLPQVNVMNDDGTMNELAGEFAGMDRFEARKATVAKLQELGALV
                     EIENRVHSVGHSERTGVVVEPRLSTQWFVKMDQLAKNAIANQDTADKVEFYPPRFNDT
                     FLQWMENVHDWVISRQLWWGHQIPAWYNESGEMYVGEEAPAGDGWVQDEDVLDTWFSS
                     ALWPFSTMGWPDTEAEDFKRYYPTSTLVTGYDIIPFWVSRMIFQGIEFTGRSPFKNAL
                     IHGLIRDEEGRKMSKSLGNGIDPMEVIEKYGTDSLRWFLSNGSAPGQDVRFSYEKMDA
                     SWNFINKIWNISRYILMNNEGLTLDAARENVAKVAAGEAGNVTDRWILHNLNETIAKV
                     TENFDKFEFGVAGHILYNFIWEEFANWYVELTKEVLYSDNEAEKVMTRSVLLYTLDQI
                     LRLLHPIMPFVTEEIFAQYAEGSIVVAAYPVVNPAFENAEAHKGVESLKDLIRSVRNS
                     RAEVNVAPSKPITILIKTADSDLETFFKANENYIRRFTNPEQLEISSSIAAPELAMSA
                     VITGAEIFLPLADLLNVEEELARLDKELAKWQKELDMVGKKLSNERFIANAKPEVVEK
                     EKEKQADYQAKYDATVARIEEMKKLVK"
     gene            13384..>14375
                     /locus_tag="U1087_000949"
     CDS             13384..>14375
                     /locus_tag="U1087_000949"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755445.1"
                     /translation="MTSSNATPSAFGWVFQANLGLYLIMDEDLKQIKKFKIEGETEDI
                     EIYYRDTTERKPKFIQAKSQEDPISDGTTSKHLSNALSSLLQVVTKVSGEYSELIYGT
                     NIEIPIRARVKQKLFEGNRIKLYYKELPEQFQTKIDGIVDVSEITSEELMSFKERFSI
                     LKISFYGQDNETRYKVVQEKVTSKLRSLGIEQYKCNRIFYYFQKEFIQNASKRVEYSI
                     EDLGLTIILFSFEDEENWSFNNLDIPEELISRIKAEFSNYILEKQLDFQFISQLVGDY
                     KKYSMTTPYIPSSQKIQHFVNDTFSNYSDYFLQKTTNVNQELIDCIIKVTVYRI"
BASE COUNT         4252 a         2505 c         3367 g         4251 t
ORIGIN      
        1 cgtgattatc tgtgaaaaaa tttagcctag gttagaaaaa tatgatataa tagtcaagat
       61 aaattgtaat tgtagaaagt tggtaacaaa gtgaaattac caaaggaagg tgactttatt
      121 acaattcaaa gttataagca tgacggtgaa attcatcgca cttggcgtga caccatggta
      181 ttaaaaacaa cggaaaatgc tattattgga gtcaataatc ataccttagt gactgaaaat
      241 gatggtaggc gttgggtaac aagagaacca gcaatcgttt attttcataa aaaatactgg
      301 ttcaatatca ttgcaatgat tcgtgaaaat ggagtttcct attattgtaa ccttgctagt
      361 ccatatgttc tcgacaatga ggcactcaaa tacattgatt atgacctaga tgttaaggtc
      421 tttgctgatg gtgaaaagag actgctggat gtggatgaat atgagcgtca tcgtaaggcg
      481 atgaagtatt cggatgatat tgattttatt ttgaaggaaa atgtcaagat actggttgat
      541 tggattaata accagcgcgg accattctct ccagcctacg ttaatatctg gtacaaacgc
      601 tatttagaac tgagaagtag ataaagttag aaaagaaaat cctgttttac aggctttttt
      661 cttattgtaa aggaggggct tatggccttt gaacaaacaa atgggcgcta tgcaagtttt
      721 ggagttgtga cctcgcttcc tggggaagtg attgatagtt tctggtatgt tattgatcac
      781 tacttaaaag gggttattcc attaaaaagt gtaatccatt tttctatcaa aaatcgtcgt
      841 ggtaagatta cgctggtctt ttcgcaggaa ggttataaaa atgtactggc tgtagatcta
      901 agtagtcgtt ttgatccttt ttatccctca acaatcttgg taatggacaa gcagggaaaa
      961 gagaccatta ctttgccaga tgaggtgacc ttgctttagc ttgaagagct ggtattttat
     1021 cacctaagat attgttaata tatgaaattt ggtgtaaaat agatttgtaa gcttatgtgg
     1081 gttagaaagg aggagtctat ggttagtcaa actgttgaaa aacctctcta tttgcagttg
     1141 gttgatgaat tggaagttgc aattcgcgaa aggatggctc cgaatgacaa gttattttca
     1201 gagcgtgagt tgacacaggt ttatggtgtc agtcgtatta cagttcgttt ggctttgcaa
     1261 gaattggaaa aacggggctt agtctataag aagcacggta agggaaccta tgtatctgag
     1321 atttcagata ctgcagttga tttgtctcag gcctatagtt ttactgagca aatgaaaaaa
     1381 attgggaaag taccgaggac atctatttta tcttttgaat tggttaaggc gtcggactat
     1441 attgcgcagc atttacaact tagtcaaggt gaggaagtgt ttgtagttga acgattgaga
     1501 cttgccgatg agattccgat gatgctagaa aggacatatg ttcctgcttc gctatttcct
     1561 ggattagctg ctcagcgaat gaagtcaact cccttgtatg aaattttttc agaggattat
     1621 catcaggtga ttcgtttggc agaagaagag ttctatgcaa gtattgcttt ggataatgaa
     1681 gctaagatac tcgggattcc aagcaatagt ccagtgcttc atttagtaag aaaaacgtat
     1741 aatgataaga atagaattat cgagtttacg tttagtattg ctagagcgga ccagtttcgt
     1801 tacaagatta cccatcaacg aggatattag aattaatact cttcgaaaat caaaactatt
     1861 cgttgtcaag agccttgatg aaatccagtt ctatcttcgc cttcgtttcc taggctactt
     1921 ttgattgtta ttgggtatga aaaaaacgcg gacgttagtc tgcgtttttt tagcgatggt
     1981 tggctgtaat ttcaaatttg taatacttcc agtgtttgta agtttcagta tattccatca
     2041 cttcaccgct agtactgtta gtagttgttt tgttttgtag tacagctggt tcagtcgctt
     2101 ttaatttcaa atgggtggca acctcttttg gacatgggct gacaatttca ttcgtttcta
     2161 caaatggttc ctcggacatg tggatattgt agtccagttt gaagcgttga tagattgatt
     2221 gatagtgctc gagtggagca tcgggattct ggatatatcg ttgagggatg tatgaattgt
     2281 ggaagatgta tggagtgtct tctgctgcgc ggacacgcac aattttatag taaaactcat
     2341 tcttgtcaag atttagtttt tcaaggatat cgggtttatt gcctttttcg cacgagagaa
     2401 cagtaacctt atccttatcc ataggaaaaa tctcaatatc agaaaattct acaagacgtc
     2461 ctttgcgtga acgagataca aaggttcctt taccttgttg gcgaacgagg taaccatctt
     2521 taactagttc gtttactgca cggataacgg taatggagct aacattaaat agttttgtta
     2581 attcagattc tgtgtaaaat ttgtcgccat tttcaaattt gccagaaaca atctgttggc
     2641 gtaagtcgtt ttgtataagt tggtacttcg gtactttcat acttatttcc ttcctttcca
     2701 cagcttatta tactaaatta gttgatgaaa atcaaaaaat atagctaaaa tacccacaaa
     2761 aatatacttt ttcactttat aaaggtgata agaaatagta aaaaaatttt taaaaagtac
     2821 tggacataac cacaaagaag tgttagtata ttaatagaaa ggtaagcggt tgcatcggag
     2881 gaagaaatga aagaatttta tattggagac caattttatt tggacggtga accctttaag
     2941 attttatcag gcgcgattca ttattttcgt gtccatcctg atgattggta ccattctttg
     3001 tataacttaa aggcccttgg ttttaatacg gttgaaacct atgtcccttg gaatatgcat
     3061 gaacctcgaa agggtgagtt ttgttacgag ggtatattgg atattgagcg atttttaaaa
     3121 ttggctcaag aattagggct ttatgcaatt gtacgtcctt ccccttatat ttgtgcggag
     3181 tgggaatggg gtggcctccc tgcttggttg atgaaggaag agcttagagt acgttcgagt
     3241 gattcggtgt acttgcagca cttagatgaa tattacgctt ctcttattcc taaattggcc
     3301 aagctccaac tcgcacaggg tggaaatgta cttatgttcc aagtggaaaa tgagtatggc
     3361 tcttatggcg aggagaagga gtatctaaga tcggtggctg gcttgatgcg taaacatggt
     3421 ctaactgctc ccttgtttac ctcggacggt tcttggcgag caacattacg tgcaggaaca
     3481 ctgatagagg acgatgtatt tgtaacagga aactttggtt ctaaagctag agagaatttt
     3541 gcaaatatga cggcattctt taatgaacat cagaagaatt ggccactcat gtgtatggaa
     3601 ttttgggatg gttggttcaa tcgttggggc gatgaaatta ttcgtagaga gccggaagaa
     3661 atggttgatt cggttatgga atgtatcgaa ttgggctccg tgaatctgta catgttccat
     3721 ggtggaacaa attttggttt catgaatggt tgctctgctc gtggtcaaat tgatttgcct
     3781 caggtaactt cttatgatta tgatgctata ttggatgaag ctggaaatcc tactaagaag
     3841 ttttatattt tgcaacaacg tttgaaagaa gtctatcctg aattagagta tgcagaaccg
     3901 cttgtaaaag aggcaaaagc tttttcagat gtgtcgcttc atgataaggt gagtctattt
     3961 gttactctag aaaatgtaag cgattgcgta aaagggtttt atcctaagaa tatggaagaa
     4021 cttgatcagt caacaggtta tattttatat agaacagagt tggagcggga taagacagaa
     4081 gcggaacgtt tccgagtggt tgatgcgcgt gaccgtatcc aaatttatgc agatggaaaa
     4141 ttcgttgcaa ctcagtatca gacagagatt ggtgacgatg ttgaattgga ttttaaagat
     4201 gacaagctaa cattagatat tttggtagaa aatatgggac gtgtcaatta tgggcacaaa
     4261 ctaacggctc ctacccagtc taaaggtctt ggtcgaggtg cgatggctga tttacatttt
     4321 attggtcatt gggaaaccta tcctttgcat cttgagtcag ttgaggacct ggattttagt
     4381 aagggctggg aggaaggtca agctgctttc tatcgttatc agtttgaact agatgaactt
     4441 gcggatactt acttagacat gacaggtttt ggtaagggag ttgttttcgt taataatgta
     4501 aatatcggac gtttctggga aaaaggacct atcctctatc tctatattcc aaaaggatac
     4561 ttaaagaaag gagaaaatga aatcgtcgtc ttcgagacgg aaggaaaata tagagagaag
     4621 attagttttt cacaggaacc cgtttataaa gaggtgtaag tgttctgcag agaacatcta
     4681 acagaaagat ttatgaagaa aaggagaaca ctgtatggca attattgcta cgcgtattga
     4741 tggtcgtttg atccacggtc aggttgctaa cctttggact actaaattaa atattagtcg
     4801 aatcatggtt attgacgatg ctgttgctca aaacgacatt gagaaacaag gtttgaaatt
     4861 ggcttgccca ccgggggtaa aattatctat tttgccaatc gaaaaagcag ccaataacat
     4921 caaggaaggc aaatatgatg cgcaacgtct cttgattgtt gctcgtcgtc cagaaaactt
     4981 ccttcgcttg gtagaatatg gtgtagaact tgctgaattg aacgtcggca atatgtcaca
     5041 atcaccagaa actcgttctg taactcgttc tattaacgtt gtagataagg atattgcaga
     5101 ttttgatgcc ttggcggcta agggtgtaaa attatttgca caaatggtac ctggcgattc
     5161 accaaaagac tttatgccat tattggataa ggttagataa cattcggata tttttgaaaa
     5221 atttaaagga ggatcactat tatgcaatgg tggcaaatat tacttctaac gctctactct
     5281 gcttaccaga tttgtgatga gctgaccatc gtatcgtcag ctggatcacc agtttttgca
     5341 gggttcatct ctggtttaat catgggcgac atggcaacag gtttggcaat cggtgctagc
     5401 ttgcagctca tggtacttgg tgtaggtact ttcggtggtg catctcgtat cgacgcaacc
     5461 tctggtgcgg tattggcaac tgccttctct gtatcacaag gtattgaccc tgaacttgcg
     5521 gtatctacta tcgcggttcc agtagcagca cttcttgttt atacagatat tgctggtcgt
     5581 ttctcaacta ctttctttgc acaccgtgta gatgctgcga ttgaacgctt tgactacgct
     5641 ggtatcgaac gcaactactt gcttggtgca attccttggg cactttctcg tgcacttcca
     5701 gtcttccttg ctcttgcttt tggtggtggg tttgtagatg caatggttaa aactattgaa
     5761 caataccaat ggattgccaa tggtttgacg cttgcagctc gtatgcttcc aggtcttgga
     5821 tttgcaatct tgctccacta ccttccactt aaacgtaacc ttcactactt ggcgataggt
     5881 ttcgccctta cagctatgtt gactgttctt tacggtaatg tgtcagcttt gggtggtgca
     5941 gttgctggta tcgttggtac tcttcctgaa gatgcaggcg tggcttttgt taacaacttc
     6001 aaaggcttgt caatgatcgg tatcgctatt gtgggtgcat tcctttcagt gcttcacttc
     6061 aaaaatagcc aaaaagtaac tgtggttgct ccatcaaatt cagaaagtgg ggaaattgaa
     6121 gatgacgaaa tctaattaca aattaacaaa agaagatttt aatcaaatca acaaacgtag
     6181 tttattcact ttccaacttg gttggaacta cgagcggatg caagcgtctg gctacctcta
     6241 catgattttg ccacaattgc gtaaaatgta tggagatggt actcctgagt tgaaggaaat
     6301 gatgaaactg catacccagt tcttcaatac ttcaccattc ttccacacta ttatcacagg
     6361 tattgacttg gcgcttgaag aaagcgacgg tgtagcttct aaggatgcgg ttaacggtat
     6421 taagactggt ttgatgggtc catttgcccc aatcggtgac tctatctttg gttctcttgt
     6481 tccagcgatt atgggtactg tggcagcgac tatgggtaag gaaggttctc cggtaggtat
     6541 tttcctttgg gtagccgtgg ctgttgcata tgatattttc cgctggaaac agttggaagt
     6601 tgcctacaaa gagggaacta aactcatcac aactatgcgt gataagttga cagctcttgt
     6661 agatgctgct tctgtaatgg gtgtcttcat gatgggtgcc ttgattgcaa ccatgattaa
     6721 ctttgaagtg acttgggctc caaatgtagg tgagaaagtg attgacattc aagacttgct
     6781 caacacaatc ttccctcgcc ttgttccagc tgtctttaca ggatttgtct tctggcttct
     6841 tggtcgtcgt ggcatgactt cgactaaagc catcttgatt atcattgggc ttgcagttgg
     6901 actttctgca atcggtcact tcgtatttgg tatggcataa tgactagaag tttagtatta
     6961 gtaagtcatg gtatcttctg tgaagagttg aagaaatcta ctgagatgat tatgggtcct
     7021 caggaggata tctatacagt agctctttta ccagaagaag gtccagaaga cttccagaaa
     7081 aaatttgaag aaacaattgc taatctagat gacttcgttg tcttcgcaga tttgttaggc
     7141 ggtacaccag ccaatgtcgt atcacgaaaa ttgattgaag gtgggcagtt tgacctttat
     7201 gcagggatga acatgccaat ggttatcggt ttcttgaacg gcgtcctgct gggagaagct
     7261 gtggattatg tagaatttgg gacaagcaac ctagttcatg tcaatagtct attaacaagt
     7321 gatgaagatg agtgaaaaac tccagtggag tttttcagcc cgagcttaga aataagagag
     7381 cgagggaagt ctaagtgact gtttcagccc gagcctagaa ataagagagt gaggctaact
     7441 cagccgattg ttacagacgg atttgatttt cgttaattat aaaatgttct atagttgata
     7501 ggctttaagt atcctgaggg agttacaata gtgactccct catttggctt atgaggaaaa
     7561 gaaatgattg aagtaaaaac atttggtgaa aaagcaaaac tgtattgctt ggaaaacaag
     7621 aatgggatgc aagtaacctt gacggatttt ggagctagag tggtgggagt gttcctccct
     7681 gtggaagaag gtggcaattt acgaaatgtc agtttgggag cgggggcggc tgaggaatat
     7741 ttgcagacgg atccctatcc cggggcaacg attatccctg tggcaggacg gatttcggat
     7801 gctcaggtgg aaattggtgg acacgtttat ccattgacag aaaatgaacc gggtcggacc
     7861 ttgcatggtg gtattggaac ggcaaatgag cagtactggg acgctgagtt agaccatgag
     7921 agaaatcaag ttacctttgg tattacctta aaagatggtt tcaatggttt tccaggcgat
     7981 gtgatggtca aggcaattta tcgtctgaca gatgccaatg agctcatggt tgagtaccgg
     8041 gctgtatcgg ataaggatac gattttcaat ccgaccaacc atatctattt caacttgact
     8101 ggtgattttc aacggtcagt tgccgagcac cgtattaaaa ttgcggccaa tcactatgct
     8161 ccgcttgggg aggataacct gcccacgggt gtcttagaag atgtgacagg gacgccgttt
     8221 gattttagag attttgcgcc ttttgctcag ggatttgatg gccaatatcc tcaaaatgta
     8281 ttggtaaaag gctatgacca cccatggtta ttggaagagg tggatattcc ggtagaagtt
     8341 ttgagtccag atgggaaaat tggactcagt gtcaaaacca accagcctgc ggtcgttata
     8401 tatacatata attttcctgt tgaagctttg gcctgttacc atggtgtctt tagtttagag
     8461 tgtcaggcct tgccaaatgc atgcaatgtc gatggatttg gttcgatttt attagaacaa
     8521 ggagaagaat ttttgtctaa aacgacctat cgttttactt ggtaaaaaaa tggggactct
     8581 gactgtgtta cagttagggt tttcttgtgt tttctagaaa atatggtata ataaaccggt
     8641 gtgtttcaat cgaagcaggc gaaagaggaa aataatgaca aaagaacaag aatttttaaa
     8701 agaatttgag gcttgggtca acactcaggt catggtaaat gagatggcgg ttgaagaaag
     8761 tcgtcgtgtc ttggaagaag acaaggatga gcgtgcagcg gatgcttata ttcgttatga
     8821 gagcaagctg gatgcctatc gattcattca agggaaattt gctaactacc atgctggcaa
     8881 aggttttcat gatttaccag atgagttgtt tggtcaaagg cattattaag gagaggagtt
     8941 aacatggcaa agaaaaaagt aaatcgaaaa aaacagttga aaaaacaatt agcagacttg
     9001 aaacgtgcag gtcgtgtagg tcttgaaaga gctgcagagg tagtagagac agttgctcac
     9061 aaggctgagg ctgtagtaga gcatgctgtg gaacaagtga aagaagttgt agcagaggtg
     9121 acttcttcag cgacttcatt ggaagacttt ttggcacttc ctgagttgga aggcattgcg
     9181 gcagcacgtt tggaaacctt ctacgaagcg ggtattcaat ctgtggctga ttttgcaaac
     9241 catacagaaa aagagctctt ggctcttaaa ggcatcggtc ctgcaactat caagcagttg
     9301 aaagaaaaag ggattgagtt gaaagcttaa atcccttgct tttcaaggta caatttgtta
     9361 caataaagcc attcagaggt gttttgatct ccatttgtca caggaagcgg tggtactgag
     9421 aaatccgcac aaatgtcaaa actggttgct gatgatgtga atcgaataag cagagtgcag
     9481 ataatgtatc tgaacaaggg tggtaccgcg gaataacttc gtccctgtct agcaagtcta
     9541 ggcggggatt ttcatttgga aaggagaaaa tatgttacat catgttgaaa tttacgtttc
     9601 taatttggaa acctcgcgtg cattttacga ctttctcctg accaagctgg gctactcgct
     9661 ctatcaggag tgggaggaag ggctgtctta taaaaaagca gagcaatacc tggtctttgt
     9721 ccaaacgcca gaggacttcc tagaggcagg ttatcaccgg tgccgtacag gtctcaatca
     9781 tctagccttc catgtgggca cacctgatga tgttgacaaa tggcggcagg aatttttggc
     9841 cagacgagtc aaattgctgt atgatgaccg ctatccacat gcaggaggat cagatcacta
     9901 tgccctctat ttggaagacc cagatgggat taagatagag ttggtggggg aggcaacatg
     9961 aatttagtaa ttattggagc acaagcttct ggcaagatga ccattgggca ggaggttgaa
    10021 agattaactg atttggtttt atttcacaat catgaatcaa tcgatttcgt aacaaaattt
    10081 tttccaatgt ctgacgaagc gagagaactt attaatgata ttcgtatgaa gttttttgaa
    10141 acctctgcga aaactgattt gggtttgatt tttacagttg ttattgactt taatgatcca
    10201 gcagatatat cctttttaga gcagattcaa gcgatttatc atagtaggaa tcaagctgtt
    10261 ctgtttattg aattggaaac agacctgcaa gaacgtttaa gaagaaatgt gactgaaaat
    10321 cgtctgcaac ataaaccttg gaaaagaaat attgagtggt ctgaaaaaga tattctagat
    10381 acaatgaagt ttgcaaactt taatccagaa tttgcgccga agcaacttga ccattatctc
    10441 aaaattaata atacccgtct ttctgccaat gacgtagctc aactaattat ccaaaaaatg
    10501 gaggagcttg agcaagagca aacgaaatag ccagcccaaa ggactgacta tttctaggag
    10561 attatatgaa aaagaaaagt tttgctattt ctagcttgag gatagtataa accaattttc
    10621 ttaaagaata ctaaaggaga aaaaataatg tcaaaagaat tatcaccaaa atacaatcca
    10681 gccgaggttg aggccggtcg ttaccagact tggttggacc aggatgtctt taagccgtca
    10741 ggtgatgcgg aggctaagcc ttattctatc gtcattccgc cgccaaacgt aacaggtaag
    10801 ttgcacttgg gacacgcttg ggataccacc cttcaagata ttatcatccg tcagaagcgt
    10861 atgcagggct ttgataccct ctggcttcca ggtatggacc acgcggggat tgctactcag
    10921 gctaaggttg aggaacgctt gcgggagcaa ggtgtgaccc gttatgactt gggccgggaa
    10981 aaattcctcg acaaagtctg ggaatggaag gatgagtacg cagcgactat tcgtgagcaa
    11041 tggggcaagt tgggtctgtc tttggactac caacgtgacc gcttcacgct ggacgaaggc
    11101 ttgtcgaaag ccgttcgcaa ggtctttgta gaactctaca aaaaaggctg gatctaccgt
    11161 ggtgaattta tcatcaactg ggacccagcg gctcgcacag ccctttctga tatcgaggtt
    11221 attcacaagg acgtagaagg tgctttctac cacatgaatt acatgttgga agatggttct
    11281 cgtgcccttc aagttgcgac aactcgtcct gaaaccatgt tcggtgacgt tgcggtggcg
    11341 gttaacccag aagacccacg ttacaaggac ttgattggca aaaatgttat cctgccaatt
    11401 gttaacaagt taattccaat cgttgcggat gaacacgcag acccagaatt tggtacgggg
    11461 gttgtgaaaa tcacacctgc ccacgatcca aatgacttcc tcgtaggtca acgccacaat
    11521 ctgccacaag tcaatgttat gaacgacgat ggtactatga acgagttggc aggcgaattt
    11581 gcaggtatgg accgctttga agctcgtaag gcaacggttg ctaagttgca agaactaggt
    11641 gccctagtgg aaatcgaaaa ccgtgtgcat tcagttggtc actcagagcg tactggtgtg
    11701 gtagttgagc cacgcttgtc aacccagtgg tttgttaaaa tggaccaatt ggctaagaat
    11761 gccattgcca accaagacac agctgataag gtagaatttt acccgccacg tttcaacgat
    11821 actttccttc aatggatgga aaatgtacac gactgggtca tctcgcgtca gctttggtgg
    11881 ggtcatcaga ttccagcatg gtataacgaa tctggcgaaa tgtacgtcgg agaagaggct
    11941 ccagcaggtg acggttgggt acaggatgag gatgtcctag atacctggtt cagctctgcc
    12001 ctttggccgt tttcaacaat gggttggcct gacacagaag cagaagactt caaacgttat
    12061 tatccaacct ctacgttggt aactggatat gatattatcc cattctgggt atcccgtatg
    12121 attttccaag ggatcgaatt tacaggtagg agcccattta agaatgctct catccacgga
    12181 cttatccgtg acgaagaagg acgtaagatg tcgaaatccc ttggcaatgg gattgaccca
    12241 atggaagtca ttgagaaata cggtacagac agtcttcgct ggttcttgtc taacggttct
    12301 gctccgggac aggatgtccg tttctcatat gaaaagatgg acgcttcttg gaacttcatc
    12361 aacaagattt ggaacatttc acgctatatc ctcatgaaca atgaaggttt gaccttggat
    12421 gcggcgcgtg agaatgttgc caaagtcgca gctggcgagg ctggcaatgt gacggaccgc
    12481 tggattctcc acaacctcaa cgaaaccatt gccaaggtca ctgaaaactt cgacaagttc
    12541 gagtttggtg tggctggtca catcctctac aacttcatct gggaagagtt cgccaactgg
    12601 tatgttgagt tgaccaagga ggtactctac agcgataacg aggccgagaa agtcatgacc
    12661 cgctctgtcc ttctctacac gctggaccaa atccttcgcc tcctccaccc aatcatgccg
    12721 tttgtgacgg aagagatctt cgctcagtac gcagagggct ctatcgtggt ggcagcttac
    12781 cctgttgtca acccagcctt tgaaaatgct gaagcccaca agggagtgga aagccttaag
    12841 gatctgattc gttcggtgcg aaatagcaga gcagaggtca atgttgcccc atctaagccg
    12901 attaccattt tgattaagac agcggattct gatcttgaaa ccttcttcaa ggcaaatgaa
    12961 aactacatcc gacgctttac aaatccagaa cagttggaaa tcagctcaag cattgctgca
    13021 ccagaactag ccatgtcagc cgttatcacc ggtgctgaaa tcttcttgcc actagccgac
    13081 ctcctcaacg tagaagaaga gttggctcgt ctggacaaag aactagccaa atggcaaaaa
    13141 gaactagaca tggtcggcaa aaaactcagc aacgaacgct tcatcgccaa cgctaaacca
    13201 gaagtcgttg aaaaagaaaa agaaaaacaa gccgactacc aggcaaaata cgatgcgaca
    13261 gtagcgcgga ttgaagagat gaaaaaactt gttaagtagg tagaataaga taaaacccca
    13321 gcctaaaaag gctggggttt gtggtataat aaggtaagaa gttggaaatc gagaggtaaa
    13381 taaatgacta gttctaatgc gacgccatca gcatttggtt gggtttttca agcaaatcta
    13441 ggactatatt taataatgga tgaagattta aaacaaatta agaaatttaa gattgaagga
    13501 gaaactgagg atattgaaat ttactataga gatacaacgg agagaaaacc aaagtttatc
    13561 caagcaaagt cacaggaaga tcctatatct gatggaacga cttcgaaaca tttgagtaat
    13621 gcattgtctt ctctcctgca agttgtcaca aaagtttcag gtgaatatag tgagttaata
    13681 tatggcacga atattgaaat tccgataaga gctcgagtta aacagaagct ttttgaagga
    13741 aataggataa agttgtacta taaagagttg ccggaacaat ttcaaacaaa aatagatgga
    13801 attgttgatg tttcagaaat aacaagtgaa gaattgatgt cgtttaaaga aaggttttca
    13861 attttaaaaa tttcttttta tggccaggat aatgaaacaa gatataaagt agttcaagaa
    13921 aaagttacat ctaagttacg ttcattagga atagaacaat ataagtgtaa tagaatattt
    13981 tactattttc aaaaggaatt tattcaaaat gcttcaaagc gtgttgagta tagtattgaa
    14041 gatcttggat taactataat tttatttagt tttgaagatg aagaaaattg gagttttaat
    14101 aatttagata ttccagaaga acttatatct cgaattaaag cagaattttc taattacatc
    14161 ttagaaaaac agcttgattt tcaatttatt agtcaacttg ttggagatta taaaaagtat
    14221 agtatgacaa caccatatat accttcatct caaaagattc agcactttgt taatgatact
    14281 tttagtaatt attctgatta ttttttacaa aaaacaacta atgttaatca ggaacttata
    14341 gattgcatta taaaagttac tgtatatcga atttt
//
LOCUS       DASFRC010000044        14268 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.044, whole genome shotgun sequence.
ACCESSION   DASFRC010000044 DASFRC010000000
VERSION     DASFRC010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 14268)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14268)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14268
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.044"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(210..1070)
                     /gene="metF"
                     /locus_tag="U1087_000950"
     CDS             complement(210..1070)
                     /gene="metF"
                     /locus_tag="U1087_000950"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HEM4755446.1"
                     /translation="MIGQTPSLSFEIFPPKPEVGNEKIIQTLDEMQGLAPHFISVTCS
                     NNNLNVEETTVKLANHVRNELHIPTIAHLPAAYLTKEKVRSVLHSLDEIGVHQILALR
                     GDIIEGLPPKEDFQYATDLISFIKEEAPHFDIIGACYPEVHPESPNSVSDIKNLKKKV
                     DAGCSTLVTQLFFDNEAFYNFQEKCSLADIEVPIIAGIMPIINRNQALRLLKTCENIR
                     LPRKFKAILEKYEHNPESLRAAGLAYAVDQIVDLVTNDVAGVHLYTMNNAETARTIHQ
                     ATHSLFKHYS"
     gene            complement(1074..3323)
                     /gene="metE"
                     /locus_tag="U1087_000951"
     CDS             complement(1074..3323)
                     /gene="metE"
                     /locus_tag="U1087_000951"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009729869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HEM4755447.1"
                     /translation="MTTTIIGFPRIGENRELKFITEKYFRNEIPQEELLTAAKDLRAK
                     HWTIVKEAGITEIPSNDFSHYDNVLDAAVLFNIVPKAVQNLDLTDLEKYFALARGYQG
                     EKGDVRARPMKKWFNTNYHYIVPAIEKDTEIKLAGHKIFDEFQEAKNLGITTRPVLIG
                     PFTLLQLTDFEEGLTATNFADSLVAAYGQVFEKLAELGAEKIQLDEPSLVKDLTAEEK
                     ALFLNIYQTLLADKKGLQVLIQTYFGDVRDIYTELTSLPVDAIGLDFVEGKETAALVA
                     TGFPADKTLYAGIVNGKNIWRNHYEKSLAILDAIPAENVVLTTSCSLLHVPFTTANEE
                     FEPAILNHFAFAVEKLNELRDLDAIRNGQGETALAANKELFSLERVGRDTVLADRLAG
                     LTDADYTRLPVFAEREAIQREKLNLPLLPTTTIGSFPQTKEIRSTRLAFRKGNISEEE
                     YDTFVKAQTDEWIAWQEEVDFDVLVHGEFERNDMVEYFGENLSGYLFSKNGWVQSYGM
                     RGVKPPIIWGDVTRLNPITVKWSSYAQSRTNKPVKGMLTGPVTILNWSFPREDISIKE
                     STLQIALAIKEEVLDLEAAGIKIIQIDEAALREKLPLRRSDWYSEYLDWAIPAFRLVH
                     STVAPETQIHTHMCYSEFTDIIPAIDNMDADVISFEASRSNLVILDELKAKNFQTQVG
                     PGVYDIHSPRVPAVDEIAHTIQAILAKVPKEKVWINPDCGLKTRGESETKASLIHLTQ
                     AAKTARKEL"
     gene            3704..4393
                     /locus_tag="U1087_000952"
     CDS             3704..4393
                     /locus_tag="U1087_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEM4755448.1"
                     /translation="MGKVIIGISGNEQEFPTKSGRVYVTVARELADSVRQAGGVPMVI
                     PMGTPDLAKDYIEMIDKLILSGGQHVDPSLYGQKRLIDSDDYLLERDAFELALIEEAL
                     RQGKPIFAVCRGMQLLNVALGGSLEQEVADHWQEGIEGTSHRLQVKPKSRVSQLFSQG
                     SSINSFHHQRIKDLAPGLVATGLDPRDGTIEAYESKGKQALFGIQWHPEFLYNDCKQH
                     RDLFQYLVDIF"
     gene            4545..5402
                     /locus_tag="U1087_000953"
     CDS             4545..5402
                     /locus_tag="U1087_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEM4755449.1"
                     /translation="MKLKKLFSLATAALSVGVLAACGSSSTSSSSDSSATTVRVGVMS
                     LSDSEQARWDKVQEILGDEVKLEFTQFTDYSQPNKAVAENEVDINAFQHYNFLNNWNE
                     ENGEDLVAIADTYIAPIRLYSGTADGRNKYTKVEEIPDGAEIAVPNDPTNESRALYLL
                     QAAGLIKVGVSGTELATIADITENKKNLKITELDASQTASSLSSVDAAVVNNTFVLEA
                     GLDYKNALYKEQKDENSKQWYNLIAARSDWEKSEQVAAIKKIIEAYHTDEVKKVIEET
                     SDGMDEPVW"
     gene            5558..6925
                     /locus_tag="U1087_000954"
     CDS             5558..6925
                     /locus_tag="U1087_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEM4755450.1"
                     /translation="MADSKVQLFENDAIIQTYFEKLKVLISKKSIFAQQIGLLDVATY
                     LKEMFEEAGADVVLDDSYAAPFVMATFKASVPDAKTLIFYNHYDTVPADADQVWEKGN
                     PFELTISEGYIYGRGVDDDKGHITARLSALKKYQARQDGQLPVNIIFIMEGAEESASV
                     DLDKYLSKYKEYLIGADLLVWEQGHRNSLHQLEIAGGNKGIVTFDLQVKSADLDIHSS
                     YGGVIDSASWYLLSALQSMRAVDGRILVDGIYEQVQEPNERELALVEEFALATSQSVT
                     DIYGLTLPTLVEDRREFLKRLYFEPSITIEGLSTGYLGQGVKTIIPAQASAKMEVRLV
                     PGLEPHDVLDKIRQHLDKHGFDKVEVVFTLGEMSYRSDMSHPAIVNVIGLAKKLTPEG
                     VAVLPTSPGTGPMHTVFHALGVPIAGFGLGNANSRDHAGDENVSIADYYSHVELVEEL
                     IASYE"
     gene            6918..7982
                     /locus_tag="U1087_000955"
     CDS             6918..7982
                     /locus_tag="U1087_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HEM4755451.1"
                     /translation="MSKEMIKLDNIDVTFQQKKRTIEAVKDVTIHINQGDIYGIVGYS
                     GAGKSTLVRVINLLQVPSAGKITIDEDVIYEGEKVTLTPAQLRSKRREIGMIFQHFNL
                     MAQMTTEENVAFALKHSGLSKEEKKEKVAKLLDLVGLSDRAENYPAQLSGGQKQRVAI
                     ARALANDPKILISDESTSALDPKTTKQILALLQELNEKLGLTIVMITHEMQIVKDICN
                     RVAVMQDGRLIEEGSVLEIFSHPKEELTQDFIKTATGIDEALVKIYQQDIVQNLPENS
                     ILVQLKYAGSNTDTAIVNDLYKFYQVSANILYGNIEILDHTPVGEMVVILSGEPGQLH
                     RAIEAVTEARVEVTILKGAN"
     gene            7983..8675
                     /locus_tag="U1087_000956"
     CDS             7983..8675
                     /locus_tag="U1087_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM4755452.1"
                     /translation="MLEWIQTNFPDIYKLGWDGQTGWLTHFYLTLYMTFVSFAFGGFM
                     GLVSGLFLVLTGPRGVIANKTVYWILDKVASIFRAIPFIILLAAIAPLTKIIVGKTIG
                     TEAALVPLALSVFPFFARQVEVVLSELDRGVIEAAQASGATFWDIVLVYLREGLPDLI
                     RVTTFALVSLVGYTAMAGAIGAGGLGQVALSYGYLRYNDDVTFLATFLILVIIFAIQF
                     IGDFLTRKISHR"
     gene            8857..9561
                     /locus_tag="U1087_000957"
     CDS             8857..9561
                     /locus_tag="U1087_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="B3/4 domain-containing protein"
                     /protein_id="HEM4755453.1"
                     /translation="MSQFVVDSSFWSLFPDAKIGVLLLKDCKTPAQSPDELVKLLEES
                     NGIAQKFLTEDTFSENEVIRTYRQAYQKFKTKKGARSSIEALLKRSTSDRPVTTISPL
                     VDIYNAASLRFGLPCGAEDLDTFVGNLQLTVTEGGDEFYLIGDETNNPTLPGEVCYKD
                     DKGAVCRCFNWRDGERTMITDETKNAFLVMELVNSDRVEDLENALDFISQHAEKFLGV
                     VPEKYLLDCDRPAIAL"
     gene            9828..10307
                     /locus_tag="U1087_000958"
     CDS             9828..10307
                     /locus_tag="U1087_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1398 family protein"
                     /protein_id="HEM4755454.1"
                     /translation="MWFFLSADGVFLVFHLKVKDRYCKERRPMFTLENINHGHEQFTG
                     PDFPKLVAYFKDLGMVENTVDIQSGQVTYRSQTGQTLEKTGYQVTIPIADQVNRDQFV
                     TILRNHQAGQTDFPTFCQETAEAGIYKWVIDLEAMTCSYLDQAEQAVFVETVPSVEN"
     gene            10513..11430
                     /gene="glyQ"
                     /locus_tag="U1087_000959"
     CDS             10513..11430
                     /gene="glyQ"
                     /locus_tag="U1087_000959"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018163989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HEM4755455.1"
                     /translation="MSKKLTFQEIILTLQQFWNEQGCLLMQAYDTEKGAGTMSPYTFL
                     RAIGPEPWNAAYVEPSRRPADGRYGENPNRLYQHHQFQVVMKPSPSNIQELYLESLER
                     LGINPLEHDIRFVEDNWENPSTGSAGLGWEVWLDGMEITQFTYFQQVGGLATGPVTAE
                     VTYGLERLASYIQEVDSVYDIEWADGVKYGEIFIQPEYEHSKYSFEVSDQDMLLENFT
                     KFEKEAERALEEGLVHPAFDYVLKCSHIFNLLDARGAVSVTERAGYIARIRNLARVVA
                     KTFVAERKKLGFPLLDEATRAELLKEDAE"
     gene            11430..13466
                     /locus_tag="U1087_000960"
     CDS             11430..13466
                     /locus_tag="U1087_000960"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017768433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HEM4755456.1"
                     /translation="MTKNLLVELGLEEIPAYIVTPAMHQLRDRMATFLTDNRLAFDSI
                     DVFSTPRRLAVRVRGLADQQTDLTEDFKGPAKKIALDADGNFTKAAEGFVRGKGLTTA
                     DIEFREIKGEEYVYVTKHEAGQPAKAVLAGIPEVLKAMTFPVSMNWASNKFAYIRPVH
                     TLTVLLDDEALDMDFLDVSSARISRGHRFLGNETEIASADFYEADLRAQFVITDPAER
                     QNMIVEQIKAIEDKHNVTVEIDEDLLNEVLNLVEYPTAFMGSFDTKYLEVPEEVLVTS
                     MKNHQRYFVVRDKAGKLLPNFISVRNGNDQYLDNVIKGNEKVLVARLEDGEFFWREDQ
                     KLKIADLVERLKVVTFHEKIGSLYEHMERTKVIAEKLADLAGLSAGEKADVARAADIY
                     KFDLLTGMVGEFDELQGIMGEKYALLAGEKPAVAAAIREHYLPNSAEGELPESKVGAV
                     LALADKFDTLLSFFSVGLIPSGSNDPYALRRATQGIVRILEAFGWEIPLDQLIAELYS
                     LNFASLTYDNQPAVMDFIRARVEKMMDKTIPKDIREAVLASSTFVVRLQLAASSAIFQ
                     KAKEADYKEAVENLSRVFNLAEKAEVTAIDEALFENDQEKALAAAVAGLELTEDMAGN
                     LDKLFALSPVIAAFFDNTMVMVDDATVKANRLALLKALADKASAVAVFNLLNSK"
     gene            13472..13909
                     /locus_tag="U1087_000961"
     CDS             13472..13909
                     /locus_tag="U1087_000961"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755457.1"
                     /translation="MSLFRIIELYVIIPLQAFVLIVLMFFFIRWMWRTSKIEKGNAKP
                     AIRKKCKQKLCTAETQGRFMRQLRFKKNYVYVYAYDVDGKTYEIYDVIIYRIGEVIKL
                     GPIPVSYTGKRQLENVDVVRIAYNPLIPQEAYLPDNQGKWTVF"
     gene            13928..14185
                     /locus_tag="U1087_000962"
     CDS             13928..14185
                     /locus_tag="U1087_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002901318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF896 family protein"
                     /protein_id="HEM4755458.1"
                     /translation="MEQAKIDRINELARKKKAEGLTEEELQEQAALREEYIEGYRRSV
                     RAHIEGIKVVDEDGNDVTPEKLRQVQREKGLHGRSLDDPNS"
BASE COUNT         3962 a         2701 c         3419 g         4186 t
ORIGIN      
        1 ttccatttca tcgcttctct gtctcctctt agagccattt ttactccttg tgactgtatt
       61 ttaaatggct gttcattatt gtaagcaaga tgtcacatac ctagacatct gctggattaa
      121 tgtcatgatg ggatgaaaaa tttatcatgt agtctttggg agtcacaggg catagaataa
      181 cccctgagct tgggcccagg gggagttttc taactataat gtttgaatag cgaatgagtt
      241 gcttgatgga tggtgcgggc cgtttcagca ttgttcatgg tataaagatg aacacctgcg
      301 acatcattgg tcactaagtc aacaatctga tctacagcat aggccagacc tgctgcgcgt
      361 agggattcag gattgtgctc gtatttttcc aagatggcct tgaatttacg agggaggcgg
      421 atattctcac aagttttcaa gagacgaagt gcctgattcc tgttgatgat aggcataata
      481 cctgcgataa taggtacttc gatgtctgct agagaacatt tctcctgaaa gttataaaat
      541 gcttcgttat cgaagaagag ttgagttacc aaggttgagc aaccggcatc aactttcttt
      601 ttcaaatttt tgatgtctga gacagaattt ggtgattctg gatgtacttc tggataacag
      661 gctccaataa tgtcaaaatg tggggcttct tccttgataa aggaaatcaa gtcagttgca
      721 tactggaagt cctctttagg gggaagacct tcaataatat cgccacgaag tgctaaaatc
      781 tgatgtacac caatttcatc gagagaatga agaacggatc ggaccttttc ttttgtcaag
      841 taagcagctg gcaaatgtgc gatagttgga atatgcaatt cattgcgaac atggttagcc
      901 aacttgacag tagtctcttc tacgttcaaa ttgttattgc tgcatgtaac actgataaaa
      961 tgaggggcca aaccttgcat ctcatcgaga gtttggataa tcttttcatt gcctacttct
     1021 ggttttggag gaaaaatttc aaatgagaga cttggggttt gaccaatcat aaattagagt
     1081 tcctttctgg ctgtcttagc tgcttgagtc aagtggataa gactagcttt tgtttctgat
     1141 tcgccacgag tcttgagtcc gcagtctggg ttaatccaaa ctttttcttt cggtacttta
     1201 gcaaggatgg cttgaatggt gtgtgcaatt tcatcaacgg cagggacacg tggagagtgg
     1261 atgtcataga caccaggacc tacctgagtt tggaagtttt tagccttgag ttcatctaga
     1321 ataacaagat ttgaacggct ggcttcaaag gagataacgt ctgcatccat attgtcgatg
     1381 gcaggaatga tgtcagtaaa ttcgctatag cacatgtgag tgtgaatttg tgtctctggt
     1441 gcaacagttg agtgaactaa tcggaaggct ggaatcgccc aatccaaata ttcactgtac
     1501 cagtcgctac gacgaagtgg taatttttca cgtaaagctg cttcgtcaat ttggataatc
     1561 ttgatacccg ctgcttcaag gtcaagaact tcttccttga tagcaagggc gatttgaaga
     1621 gttgattctt taatagaaat atcttcacga gggaatgacc agttgagaat ggttactggc
     1681 cctgtcaaca tacctttaac tggtttgttt gtacggcttt gtgcatagct tgaccattta
     1741 acagtgattg ggttcaagcg cgtcacatcc ccccagatga ttggtggttt taccccacgc
     1801 ataccatatg attggaccca tccgttctta ctgaagagat aaccagaaag gttttcaccg
     1861 aagtattcta ccatgtcgtt tcgttcaaac tcaccatgaa ccaagacatc gaagtcaact
     1921 tcttcctgcc atgcaatcca ttcgtctgtt tgagctttaa caaatgtatc gtattcttct
     1981 tctgagatat ttcctttgcg gaaagccaag cgtgtgctgc gaatttcttt tgtttgaggg
     2041 aaagatccaa tcgttgttgt tggaagaagt ggtaagttca atttctcacg ttgaatggct
     2101 tcacgttctg caaagactgg taggcgtgta tagtcagcgt ctgtcagtcc tgcaagacgg
     2161 tctgcgagca ctgtgtcacg accaactcgt tcaagggaga aaagttcctt gtttgctgct
     2221 agggctgtct caccttgtcc attgcgaatg gcatctaaat cacgcaattc gttcaatttt
     2281 tcaactgcaa aggcaaagtg gttgagaatt gcgggttcaa actcttcatt tgctgttgtg
     2341 aaaggcacgt gaagaagaga gcaagaagtt gttaggacga cattttcagc tggaatggca
     2401 tccagaatag ccaagctctt ttcataatgg ttacgccaga tatttttacc gttgacgata
     2461 ccagcgtaga gggtcttgtc agctgggaag cctgttgcaa caagtgcagc agtttcctta
     2521 ccttctacaa agtcaagacc gatggcatca actggtaggc tggtcaattc tgtgtaaata
     2581 tcacgaacat caccgaagta ggtttggata aggacttgca agcctttttt atctgccaag
     2641 agtgtttgat agatgttaag gaagagggct ttttcttctg cagtcaagtc cttgaccaag
     2701 ctaggctcgt ctaactggat tttttcagcg ccaagttctg ccaatttctc aaagacttgt
     2761 ccgtaggctg caactaagct atcagcgaaa ttagtagcag ttaaaccttc ttcaaaatca
     2821 gttaattgta agagtgtgaa tggaccaatc aaaactggac gagttgtgat acctaagttc
     2881 tttgcttctt ggaattcatc gaaaatctta tgaccggcta gtttgatttc tgtatctttt
     2941 tcaatagctg gaacgatata gtggtagttg gtgttgaacc attttttcat gggtctagca
     3001 cgaacgtccc ctttttctcc ttgataacca cgtgcaagag caaagtattt ttcaaggtca
     3061 gtcaagtcaa gattctgtac tgctttaggt acgatgttga agagaacagc cgcatccaaa
     3121 acattgtcat agtgggagaa gtcgttgctt gggatttcag taatgcctgc ttctttgaca
     3181 atagtccagt gcttggcacg caagtcctta gctgccgtca aaagttcttc ctgtggaatt
     3241 tcatttctaa agtatttttc agtgataaat tttaattcgc ggttttcgcc gatgcgtggg
     3301 aagccgataa tagttgtagt catgggattt cctccaaaat atttctatgc ccctatccta
     3361 acagaaaaaa cgactcttgt ataattgtaa aaaattagag ggagttataa cttttgacta
     3421 taacagattt aaagagagct acttttttga tatttcttcc atatgaaagc ttgaaaacac
     3481 gcctgtttat caggcttgac ttttttatgc tggctcaggt atagtttttc cctaagcgtg
     3541 atatagattt tatctataaa attgtcaaag gtaaaccctt gtttatgagc aattgtttat
     3601 aggtagttct gatagttatt ttttatcaag ccataaaact tctatattag acaggcttag
     3661 ttggtcatgt tacaatatat aaaatcgcag aaaggagttt cttatgggaa aagttatcat
     3721 tggaatttca ggaaacgagc aagaatttcc aaccaaatca ggtcgcgtat atgtaacggt
     3781 agcgcgtgaa ttggcagaca gcgttcgtca ggcaggtggt gtgccaatgg ttattcctat
     3841 gggaactcct gatctagcta aagactatat cgaaatgatt gacaagttga ttttgtcagg
     3901 tggtcagcat gtggatccaa gtctctacgg tcaaaaacgc ttgattgata gtgatgatta
     3961 cctcttggaa cgtgatgcat ttgagttagc tttgattgaa gaggcccttc ggcaaggaaa
     4021 acctattttt gccgtttgcc gtggcatgca gttgctcaat gttgctctag gtggtagttt
     4081 agagcaggaa gtggctgatc attggcaaga gggtatcgag ggaacatctc atcgtttaca
     4141 ggttaaaccg aagagtcgtg tcagtcagtt gttctctcaa ggtagctcca ttaattcttt
     4201 ccatcatcag cgaattaaag atttggcacc aggtttggtg gcaactggtc ttgatccgag
     4261 agatggtacg attgaagcct acgaaagtaa ggggaaacaa gctttgtttg gtatccaatg
     4321 gcatccagaa tttttataca atgattgtaa gcaacataga gacttgtttc agtatttagt
     4381 agatatattt taagaggggt atccctcttt ttattatcaa cgcttataat tgcaagggta
     4441 tttgttataa cgaaaagtta taactttcta taaaaaaagt caattagtca gaaagaaaat
     4501 tctgtgttaa gatagataca gttctaattt aaggagatca ttttatgaaa ttaaaaaaat
     4561 tgtttagttt ggcaacagct gctttatcag taggtgtact tgctgcatgt ggtagctcgt
     4621 ctactagctc ttcatccgat tcttcagcaa caactgttcg tgtgggtgtg atgagcttga
     4681 gcgattctga gcaagcccgt tgggataaag ttcaagaaat acttggggac gaagtgaagt
     4741 tggaattcac tcaatttaca gactattcac aaccaaacaa ggcagtagct gaaaacgaag
     4801 tagacatcaa tgctttccaa cactacaact tcttgaataa ctggaatgaa gaaaatggtg
     4861 aagacttggt tgctattgca gatacttata tcgcaccaat tcgtctttac tcaggtacag
     4921 ctgatggaag aaacaagtac actaaagtgg aagaaattcc agatggtgca gaaattgcgg
     4981 ttccaaacga cccaacaaac gaaagtcgtg ctctttacct tcttcaagca gctggtttga
     5041 tcaaggttgg tgtatctggt acagaattgg caactattgc tgacattact gaaaacaaga
     5101 aaaacttgaa gatcactgag ttggatgcaa gccaaacagc aagctcactt agctcagttg
     5161 atgcagcagt tgtaaacaac acatttgtgt tggaagctgg tttggattac aaaaatgccc
     5221 tttacaaaga gcaaaaagat gaaaattcaa aacagtggta caacttgatt gcagctcgta
     5281 gcgattggga aaaatcagag caagtagcag cgattaagaa aattatcgaa gcctaccaca
     5341 cggatgaagt gaaaaaagtt attgaagaga cttcagacgg tatggatgag ccagtttggt
     5401 aaaatgtaaa taggttgagg actgggcaga attgttcagc cctctatctg tttttataga
     5461 gataagaaaa aatctcttaa ccaaagtcag aaatgtggga gaatatttga ttttggttag
     5521 tagatttgat tgatttcatt gagtatgagg agaaagtatg gcagatagta aagttcaatt
     5581 atttgaaaat gatgcgatta ttcaaaccta ttttgaaaag ttgaaggtct tgatttcaaa
     5641 gaaatctatt tttgctcagc agattggttt gttggatgtg gcgacttact tgaaagaaat
     5701 gtttgaagaa gctggggcag atgttgtttt agacgacagc tatgccgcac catttgtcat
     5761 ggcaacgttt aaggcttcgg tgccagatgc gaaaacattg attttctaca atcattatga
     5821 tacagtacct gcagatgccg atcaggtctg ggagaagggc aatccttttg aattgactat
     5881 ttctgaaggt tatatctatg gtcgcggggt ggacgatgac aagggccata tcacagctcg
     5941 tctgtcagcc ttgaaaaaat atcaagctag acaagatggt cagctccctg ttaatatcat
     6001 ctttattatg gagggggcag aggagtcagc ttctgttgac ttggacaagt atctttcaaa
     6061 atataaagag tatttgattg gtgctgattt gcttgtctgg gagcaagggc atcgcaatag
     6121 cctacatcag ctagaaattg ctgggggaaa taaaggaatt gtgacctttg atcttcaggt
     6181 caaatcagcg gacttggata ttcattcttc ctatggtggt gtcattgatt cagcaagctg
     6241 gtatttgttg tcagctcttc aatccatgag agcggtagat ggacgcatct tggttgatgg
     6301 tatttacgag caagtgcaag agccaaatga acgtgaatta gccttagttg aggaatttgc
     6361 actggctacc agtcagtctg tgacggatat ttatggatta actcttccaa ccttggtaga
     6421 agatcgtcgt gagtttctga agcgtttgta ttttgagcca tcgattacca ttgaaggctt
     6481 gtcaactggc tatcttggtc aaggtgtcaa gaccatcata ccagctcagg cttctgctaa
     6541 gatggaagtc cgtctggtac ctgggttgga gccgcatgat gtattagata agattcgcca
     6601 gcatttggac aagcatggtt ttgataaagt tgaggttgtc ttcactctag gagagatgag
     6661 ctaccgaagt gacatgtccc accctgccat tgtcaatgtg attggattgg ccaaaaaatt
     6721 gacaccagaa ggagttgctg tcttgccgac gtcaccgggg acgggcccca tgcacaccgt
     6781 ctttcatgct ttaggagtgc cgattgcagg atttggtcta ggaaatgcca acagccgtga
     6841 ccatgccggt gatgaaaatg tcagcatcgc tgactactat agccatgttg aattagtaga
     6901 ggagttaatt gcaagttatg agtaaggaaa tgattaagct agataatatt gatgtaactt
     6961 tccagcagaa aaaacgtacg atcgaagcgg taaaggatgt gaccatccat atcaatcaag
     7021 gggatattta cggtatcgta ggttattctg gagcagggaa atctaccctt gttcgagtga
     7081 ttaatttgtt gcaggttccg tctgcgggta agattaccat tgatgaggat gtaatttacg
     7141 agggagaaaa ggtcacactt accccagctc aattgcggag caaacgccgt gaaattggca
     7201 tgattttcca gcatttcaat ctgatggctc agatgacgac agaagaaaac gtagcctttg
     7261 cccttaagca ttcgggtttg agcaaggaag agaagaaaga aaaagttgct aagttgttgg
     7321 acttggttgg gctttctgac cgtgctgaaa actatccagc tcagttgtct ggtggtcaaa
     7381 aacaacgtgt tgccattgcg cgtgccttgg ccaatgaccc taaaatcttg atctcagatg
     7441 agtctacttc tgccttggat ccgaaaacga ctaagcaaat tttggcactt ttgcaagaat
     7501 tgaatgaaaa attgggcttg accattgtta tgattaccca cgagatgcag attgtaaaag
     7561 acatttgtaa ccgtgtggcg gttatgcagg atggtcgctt gatcgaagaa ggttcagttt
     7621 tagaaatctt ctctcatcca aaggaagaat tgacacagga tttcatcaaa acagcaacag
     7681 gaattgatga ggccttggta aaaatttatc agcaagatat tgttcagaat ttgcctgaaa
     7741 atagtatctt agttcaattg aaatatgctg gttccaatac ggatacggcg attgtcaatg
     7801 atttgtataa attctatcaa gtgtctgcca atattcttta tggcaatatt gaaattttgg
     7861 accatacgcc agtcggtgag atggtggtga tcttatcagg tgaacctggt cagttgcacc
     7921 gtgcgattga ggcagtaacg gaggcgcgtg tggaagtgac gattttgaaa ggagcaaatt
     7981 agatgttaga atggattcaa acgaattttc cagatattta taaattgggc tgggatggtc
     8041 agacaggttg gttaacacat ttttatttga ccctctatat gacctttgtt tcctttgctt
     8101 ttggtggatt tatgggcttg gtgtctggtt tgttcttggt cttgacaggt ccacgtgggg
     8161 ttattgccaa taagactgta tattggattt tggacaaggt ggcttctatc ttccgtgcca
     8221 ttccttttat tatcttgttg gcagctattg ctcctttgac gaaaattatt gttggaaaaa
     8281 ccattggtac agaggcggct ttggtgccgc tcgccctttc agtctttccg ttctttgccc
     8341 gtcaggttga agtggtcttg tcagaattgg accgtggtgt cattgaggct gctcaggcat
     8401 caggtgcgac tttctgggat attgtccttg tctatctgcg tgagggtctg cctgacttga
     8461 ttcgtgtgac gacatttgcc ctggtttcct tggtcggcta tacagccatg gcaggagcta
     8521 tcggagcagg tggtttggga caggttgcac tctcctacgg ttacttgcgc tacaatgatg
     8581 atgtgacctt ccttgctaca ttcttgattt tggtcatcat ctttgccatt caattcattg
     8641 gtgatttctt gaccaggaag attagtcata gatagttatt tagctgtgtt ttttcaaatt
     8701 ttagatagtc cttgacttat ttaaagcatt tttatacaat aaatttaatt aaataaacac
     8761 tgccaccggg tagtcatgca acagcatttt atgaacgtcg ttaggtctta gaagatgttc
     8821 atagggtgct gatttttcta taaaaggagt gagaatatgt cacaatttgt tgttgattca
     8881 tctttttgga gtctatttcc agatgcaaaa attggagttc tattattgaa agattgtaaa
     8941 acgccggcgc aatcgcctga tgaattagtg aaattactgg aagaaagcaa cggaattgcc
     9001 cagaaatttc ttacggaaga tacctttagt gagaatgagg tcattcgtac atatcgtcaa
     9061 gcctatcaaa aatttaaaac aaaaaaaggc gcgcgttcta gtatcgaagc ccttttgaaa
     9121 cgttcaacta gtgaccgtcc agtcacaaca atttctccat tagtggacat ttataatgcg
     9181 gcgagtttac gttttggtct tccatgtggt gctgaagatt tagatacatt tgtaggcaat
     9241 ctccaactaa cggtcactga gggtggggat gaattctatc tcattggtga tgaaaccaat
     9301 aatccaactt taccaggtga agtttgctat aaggatgata aaggcgccgt ttgtcgctgt
     9361 ttcaattggc gcgatggtga gcgaaccatg attacggatg agacaaagaa tgctttcttg
     9421 gtcatggagt tggtcaattc tgatagagta gaagatttgg aaaatgccct agattttatc
     9481 agtcaacacg cagaaaaatt cttgggagta gtaccagaaa aatatctact agattgcgat
     9541 aggccagcaa tagccttgta ggatttgtca gcgggattgt gttcggataa atagtggtct
     9601 ttctagacaa atgctgattt ttctgctaca atactaagca tgaaagaagg ttgtttcaaa
     9661 agcctgtcta gcgagcttgg gagagtgaaa gccaagccag tcttgaaata attggcgctt
     9721 tcccagtcgt gaccatgtcc gactcaatca gaatcataca aatgaagtaa taaattaggg
     9781 tggaaccgcg ttctcaacgc ccctatgtct gttgacaggg gaagagaatg tggttctttt
     9841 tgtctgccga cggagtattt cttgtatttc atctcaaggt gaaagacagg tattgtaaag
     9901 aaaggagacc aatgttcacc ttagaaaata tcaatcacgg gcatgagcag tttactgggc
     9961 ctgattttcc caagctggtt gcctatttta aggacttggg catggtagaa aatacagtgg
    10021 atatccagtc tgggcaggtt acctatcgct cacagacagg gcagactctg gaaaagacgg
    10081 gctatcaagt aacgatacct attgctgacc aagtcaatcg tgaccagttt gtgactatct
    10141 tacgcaatca tcaggctgga caaacagatt tccccacctt ctgccaagaa acagcagaag
    10201 cagggattta caagtgggtc atcgacctag aagccatgac ctgctcctat ctggaccagg
    10261 cagagcaggc tgtctttgtg gaaaccgtac cgagtgtgga gaactagcca ttttgcaata
    10321 tatatagaaa gaggatgtta tgtcaaagaa acttactttt cacagcgtca gtggcatcgt
    10381 ctcctttcag tcgaattgcc acacgctcat cgctagggcg actgagctag acgctgtact
    10441 agttcgcctt tcctagcggt gtcggctagg aaggctcacg tcgcaatcaa tttatataga
    10501 aagaggaaat atatgtctaa aaaacttacc tttcaggaaa ttatcctgac cttacaacaa
    10561 ttttggaatg agcagggttg tttgctcatg caggcttatg atacggaaaa aggggcgggt
    10621 accatgagcc cttacacctt cttgcgtgcc atcggtcctg agccttggaa tgcggcttat
    10681 gttgagccaa gtcgtcgtcc agcggacggt cggtatgggg aaaatccaaa ccgtttgtat
    10741 cagcaccacc aattccaagt agttatgaaa ccatctccat ctaatatcca agaactttac
    10801 ttggagtctt tggagcgttt gggcatcaat cctttggaac acgacattcg tttcgttgag
    10861 gacaactggg aaaatccgtc tacaggttca gctggtctgg gctgggaagt ttggttggac
    10921 ggcatggaaa tcacgcagtt tacctatttc caacaggttg gtggtttggc gacaggtcct
    10981 gtcacagccg aagtaaccta tggtttggag cgtctggctt cttacattca agaggttgac
    11041 tctgtttacg atatcgagtg ggctgacggt gttaaatacg gcgaaatctt tattcagcca
    11101 gagtatgagc attcaaaata ttcctttgaa gtatccgacc aagatatgct ccttgaaaac
    11161 ttcactaagt ttgaaaaaga agcagagcgg gctttggaag aaggcttggt ccatccagcc
    11221 tttgactatg tactcaaatg ctctcatatc tttaacctgt tggatgcccg cggagctgtg
    11281 tctgtaaccg agcgtgcagg ctacattgcc cgtatccgta accttgcccg tgtcgttgcc
    11341 aagacctttg tggcagagcg gaagaaactc ggcttcccac ttttagacga agcaacacga
    11401 gcagaattgt tgaaggagga cgcagaataa tgaccaaaaa tttacttgtt gaacttggct
    11461 tggaagaaat tcctgcctac atcgtaaccc cagccatgca ccagttgcgt gaccgcatgg
    11521 cgaccttttt gacagacaat cgcttggctt ttgacagcat cgatgtcttt tcaacaccac
    11581 gccgtttggc tgttcgtgtg cgtggtttgg cagaccagca gactgatttg acagaagatt
    11641 tcaagggtcc tgctaagaag attgccttgg atgcagacgg gaacttcacc aaggcggctg
    11701 aaggttttgt ccgtggcaaa ggcttgacga cagctgacat tgagttccgc gagatcaagg
    11761 gcgaagagta tgtctacgtg accaaacacg aagctggtca gccagccaag gcagttttgg
    11821 cgggcattcc agaagttttg aaagctatga ccttcccagt cagcatgaac tgggcgtcca
    11881 acaaattcgc ctacatccgc cctgtccaca ccttgaccgt tctcttggac gatgaggcat
    11941 tggatatgga cttcttggac gtttcgtcag ctcgcatcag ccgtggtcac cgtttccttg
    12001 gaaatgaaac tgagattgca agtgcagatt tttacgaggc tgatttgcgt gcacagtttg
    12061 tcattacaga ccccgcagag cgtcaaaata tgatcgtcga gcaaatcaag gctatcgagg
    12121 ataaacacaa cgtgacagtc gaaattgatg aagatttgct taatgaagtt ctcaacttgg
    12181 tcgagtatcc aactgccttc atgggttctt ttgatactaa atatttggaa gtaccagaag
    12241 aagttttggt aacttccatg aaaaaccacc agcgttactt tgtagtgcgg gataaggctg
    12301 gcaagctttt gccaaacttc atctccgtcc gaaacggtaa tgaccagtac cttgacaatg
    12361 tcattaaagg aaacgaaaaa gtcttggtgg cccgtttgga agatggtgag ttcttctggc
    12421 gtgaggacca aaaactcaag attgctgact tggtagagcg actcaaagtt gtgaccttcc
    12481 atgagaaaat cggctcactt tacgagcaca tggaacgcac caaagttatc gcagaaaaac
    12541 tggctgactt ggcaggtttg tctgcgggtg aaaaagcaga tgtggcgcgt gcggcggaca
    12601 tctacaaatt tgacctcttg acaggcatgg tcggtgagtt tgatgaattg caagggatta
    12661 tgggtgagaa gtatgccctt cttgcagggg aaaaacctgc ggtggcagcg gcaatccgtg
    12721 agcactactt gccaaactca gcagaaggcg aattgcctga gagcaaggtc ggtgcggtcc
    12781 tggcactggc tgataagttt gacaccctcc tatccttctt ctcagttggc ttgattccgt
    12841 ctggttcaaa cgacccttac gctcttcgtc gtgcaacaca gggtatcgtg cggattttgg
    12901 aagcatttgg ttgggaaatt ccattggatc agttgattgc ggagctctac agcttgaatt
    12961 ttgctagctt gacctatgac aaccagccag ctgttatgga ctttatccgt gctcgtgtag
    13021 agaagatgat ggacaagacc attccgaaag acatccgcga ggctgtactt gccagctcaa
    13081 cttttgtggt cagactgcaa ctggcagcca gctctgctat tttccaaaaa gcaaaagagg
    13141 ctgactacaa ggaagccgtg gaaaacttgt cacgtgtctt caacttggct gaaaaggcgg
    13201 aggtgactgc gattgacgag gccctcttcg aaaacgacca ggaaaaagcc cttgctgctg
    13261 cagtggcagg cttggagttg acagaagata tggcgggcaa cttggacaag ctctttgctc
    13321 tcagcccagt catcgcggcc ttcttcgaca ataccatggt tatggtagat gacgcaacag
    13381 tcaaagcaaa tcgcttggct ctcttgaaag ccttggcgga taaggcaagt gctgtggcgg
    13441 tcttcaatct cttgaatagc aagtaggtag tatgtctctt ttcagaatta tagagttgta
    13501 tgttatcatt cctttgcaag cttttgtgct gattgttctt atgtttttct ttattcgttg
    13561 gatgtggcga acatctaaga tagaaaaggg taatgctaaa cctgctattc gcaaaaagtg
    13621 caaacagaaa ctttgtactg ctgaaacgca agggcgtttt atgaggcaat tacgttttaa
    13681 gaagaattat gtctatgttt atgcttatga tgtggatgga aaaacctatg aaatttatga
    13741 tgttattatt tataggatag gtgaagttat taagttaggt ccaattccgg ttagttatac
    13801 aggaaaaaga caattagaga atgttgatgt agtgagaatt gcctataatc ctctgatacc
    13861 acaggaagcg tatttaccgg acaatcaagg gaagtggacc gtgttttaag agataaaagg
    13921 agttattatg gaacaagcaa aaatcgatcg gatcaatgag ctggcccgca agaaaaaagc
    13981 agaaggcttg acagaggagg agttgcagga acaggcggct cttcgtgagg agtacatcga
    14041 gggctaccgc cgtagtgtgc gtgcccacat cgaaggtatc aaggtcgtcg atgaagacgg
    14101 caatgatgtg acgccagaga aactccgtca agtccaacgt gaaaaaggtt tgcatgggcg
    14161 tagtttggat gatccaaatt cctaagaata aatgataata aacaaggaaa gactaggttt
    14221 tctagtcttt tttgtgcttg tagcctactt acaataacga attactcg
//
LOCUS       DASFRC010000045        14211 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.045, whole genome shotgun sequence.
ACCESSION   DASFRC010000045 DASFRC010000000
VERSION     DASFRC010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 14211)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14211)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14211
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.045"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            274..459
                     /locus_tag="U1087_000963"
     CDS             274..459
                     /locus_tag="U1087_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000139836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HEM4755459.1"
                     /translation="MTERELKKIAKKQGFSKTNFGKGSHEVWKHPDGRTVTIPKPKEK
                     DYRPGTLSNILKVLYGE"
     gene            520..924
                     /locus_tag="U1087_000964"
     CDS             520..924
                     /locus_tag="U1087_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000878125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HEM4755460.1"
                     /translation="MKYNYLALFEADKENGGYSISFPDFPGAFSEADNLSEAIFNARE
                     VLEIYTIMFEDEGKEFPKPSSFKALASNLTSDDDVIQAISVDTELVRERERSKIVNKT
                     VTLPSWLVEIGKENKVNFSQLLQKAIREELQV"
     gene            complement(1094..1164)
                     /locus_tag="U1087_000965"
     tRNA            complement(1094..1164)
                     /locus_tag="U1087_000965"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1130..1132),aa:Cys,seq:gca)
     gene            1456..2232
                     /gene="rpsB"
                     /locus_tag="U1087_000966"
     CDS             1456..2232
                     /gene="rpsB"
                     /locus_tag="U1087_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEM4755461.1"
                     /translation="MAVISMKQLLEAGVHFGHQTRRWNPKMAKYIFTERNGIHVIDLQ
                     QTVKLADQAYEFIRDAAANDAVILFVGTKKQAAEAVKDEAIRAGQYFINHRWLGGTLT
                     NWGTIQKRIARLKEINRMEEDGTFEVLPKKEVALLNKQRARLEKFLGGIADMPRIPDV
                     MFVVDPHKEQIAVKEAKKLGIPVVAMVDTNTDPDDIDVIIPANDDAIRAVKLITAKMA
                     DAIIEGNQGEDSVAAVEAEMAAEPASTESIEELVEVVEGK"
     gene            2359..3399
                     /locus_tag="U1087_000967"
     CDS             2359..3399
                     /locus_tag="U1087_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HEM4755462.1"
                     /translation="MAEITAALVKELREKSGAGVMDAKKALVETEGDIEKAIELLREK
                     GMAKAAKKADRVAAEGLTGVYVDGNVAAVVEVNAETDFVAKNAQFVELVNTTAKVIAE
                     GKPADNEAALKLAMPSGETLEEAYVNATATIGEKISFRRFALVEKTDAQAFGAYQHNG
                     GRIGVISVVEGGDETLAKQISMHIAAMKPTVLSYTELDEQFVKDELAQINHKIEQDNE
                     SRAMVDKPALPLLKYGSKAQLTDEVIAAAEEAIKAELVAEGKPEKIWDKIIPGKMDRF
                     LLDNTQVDQAYTLLAQVYIMDDSKTVEAYLNSVNASVVEFARFEVGEGIEKASNDFEA
                     EVAATMAAALGK"
     gene            complement(3566..3904)
                     /locus_tag="U1087_000968"
     CDS             complement(3566..3904)
                     /locus_tag="U1087_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol reductase thioredoxin"
                     /protein_id="HEM4755463.1"
                     /translation="MNFQDYIQDFTSVTVEQAQNLLATKERAVLFIGRATCPYCNRFA
                     PKLHKVAQDKQVTVHFLDSSQISPELQALRDHYQVPTVPGLLVAKSTGVQVRCDSSMT
                     EEEIAAFIQD"
     gene            4174..4632
                     /locus_tag="U1087_000969"
     CDS             4174..4632
                     /locus_tag="U1087_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CtsR family transcriptional regulator"
                     /protein_id="HEM4755464.1"
                     /translation="MAMKNTSDYIEEHIKAILDQVSVAELRRSELASRFEVVPSQINY
                     VIKTRFTASRGYIVESKRGGGGYIRIGRITFSDKHELVHDLLNNMGEQLSATVYADIL
                     QLLFDEGLMTEREGNLFLSTGSDEILGKDASTIRARMMRQILRRLDRKEE"
     gene            4636..7089
                     /locus_tag="U1087_000970"
     CDS             4636..7089
                     /locus_tag="U1087_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HEM4755465.1"
                     /translation="MKISTGLQRVFEDAQLVAQRYACDYLETWHVLLSFVINHDTVAG
                     AVLAEYPISISDYEHATFVVTDKVYREELDSFRILPSSKRLDETASFAKKIAEVVKAK
                     ELGTEHLFMAMLLDKRSTASQILDKVGFCFEDSDDKFRFLDLRKNLEARAGFTKEDLK
                     AIRSVMKGGKAKPANMGQMMGMPPAPQSGGLEDYTRDLTALAREGKIEPVIGRDAEIA
                     RMIQILSRKTKNNPVLVGDAGVGKTVLALGLAQRVAAGDVPVSLAKMRVLELDLMNVI
                     AGTRFRGDFEERMNNIINDIEEDGQVILFIDELHTIMGSGSGIDSTLDAANILKPALA
                     RGTLRTVGATTQTEYQKHIEKDAALVRRFAKVTIEEPTVEDSIAILTGLKGTFEKYHR
                     VRIGQATVETAVTYAKRYLTSKNLPDSAIDLLDEASATVQNRVKGQAEETGLTSIDKA
                     LMDKKYKTVSKLLIKTKEDAEASQNYDIEVTEEDVLETLSRLSGITVAKLSQSDTKKY
                     LNLEAELHKRVIGQEEAISAVSRAIRRNQSGIRTGRRPIGSFMFLGPTGVGKTELAKA
                     LAEVLFDDESALIRFDMSEYMEKFATSRLNGAPPGYVGYEEGGELTEKVRNKPYSVLL
                     FDEVEKAHPDIFNVLLQVLDDGVLTDSKGRKVDFSNTIIIMTSNLGATALRDDKTVGF
                     GALDLSKDHKEVEKRIFEELKKAYRPEFINRIDEKVVFHSLTESHMQDVVKVMIKPLL
                     AVTAEKGITLKLQPSALKLLAKQGYDPEMGARPLRRLLQTKLEDPLAEMLLRGDLTTG
                     STLKVGVKGEELKFDVVKG"
     gene            7208..7699
                     /locus_tag="U1087_000971"
     CDS             7208..7699
                     /locus_tag="U1087_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase/cytidyltransferase family
                     protein"
                     /protein_id="HEM4755466.1"
                     /translation="MNQTIAVVFGTFVPMHKGHLDLIERAKLACGQVCVVVSGYDRDR
                     GDRIGLDLAKRFQFAQEQFKEDDLVRVCALDETDLPAYPDGWDLWLDRLLALLDLSEH
                     QVPIFYVSEEEYAQELHSRGYQAHFSPRKFGISATLIREQPQQYQDYIAPAFLAFFEK
                     ESL"
     gene            7897..8280
                     /locus_tag="U1087_000972"
     CDS             7897..8280
                     /locus_tag="U1087_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755467.1"
                     /translation="MKKNLLKKTIVCFINLLVVLMAVAPPAVSAQAASRIETPVETKS
                     KHFSNLEGGGDLSYINLSGYSNRFGTAASGRSGTYFGPRGTYVTRDWSVNSGGGSHGG
                     SYWKLFNRNGQRIGTYDKYGNYLRP"
     gene            8300..8533
                     /locus_tag="U1087_000973"
     CDS             8300..8533
                     /locus_tag="U1087_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755468.1"
                     /translation="MQIIQLNNFEIKISERLHSIYDGKNKILVIFPDHTAICCQVKLS
                     QTGGFLVDTFWGVEYEISGNMVTIYYTDEEELE"
     gene            8530..8772
                     /locus_tag="U1087_000974"
     CDS             8530..8772
                     /locus_tag="U1087_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755469.1"
                     /translation="MKQYLFRQHTIHVHPSLNVFIGNDEAEMVLYSKEPDFTLLALLR
                     WLPDKNSIRIINRWKLTYEYDGNNNIYIHYDSDYRY"
     gene            complement(8886..9890)
                     /gene="dusB"
                     /locus_tag="U1087_000975"
     CDS             complement(8886..9890)
                     /gene="dusB"
                     /locus_tag="U1087_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HEM4755470.1"
                     /translation="MANLNTPFMIGDVEIPNRCVLAPMAGVTNSAFRTIAKEMGAGLV
                     VMEMISEKGLLYNNEKTLHMLHIDDNEYPMSIQLFGGDAEGLKRAADFIQTNTKANIV
                     DINMGCPVNKVVKNEAGAKWLKDPDKIYHIIKEVTSVLDIPLTVKMRTGWNNTDLAVE
                     NALAAESAGVSALAMHGRTREQMYTGTVDLETLTKVAGSLTKIPFIANGDIRNVQDAR
                     QRIEEVGADAVMVGRTAMGNPYIFNQINHYLETGEVLPDLSFDDKLNVAFDHLTRLTN
                     LKGESVAVREFRGLAPHYLRGSAGAAKIRGAVARAETIEQVQELFDQAREAYQERIAK
                     "
     gene            complement(9883..10749)
                     /gene="hslO"
                     /locus_tag="U1087_000976"
     CDS             complement(9883..10749)
                     /gene="hslO"
                     /locus_tag="U1087_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HEM4755471.1"
                     /translation="MDKIIKTLSKSGHFRAFVLDSTETVKTAQEKHDTMASSTVALGR
                     TLIANQILAANEKGDTKITLKILASGAIGAIISVANTKGQVKGYIQNPDLDYKRTATG
                     EVIVGPLVGNGQFLVITDYGTGHPYNSMTPLISGEIGEDFAYFLTDSQQTPSAVGLNV
                     LLDEEDKVKVAGGFLLQVLPGATEAEIARFEKRIQEMPAISSLLASENHIEALLSAIY
                     GDDDFKRLSEEEIGFVCDCSKDRFLDALASLPKADLQEMKEEDKGVDITCQFCQTHYH
                     FDENDLEELING"
     gene            complement(10829..13948)
                     /locus_tag="U1087_000977"
     CDS             complement(10829..13948)
                     /locus_tag="U1087_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM4755472.1"
                     /translation="MKIRNHSLFYTVGSVAVTAGLLLSLATSPIPSVHATEVAIENYP
                     SLAITKSEVTIQGYLIAPLNSSGTAFDATNKTNLALGASMDTAAADTIPIQLKEPLRS
                     QFNLVDHPELVGKLVRITGTSDTYMKRAGIKPATAIEIVDSSSTNVQPPTSENTTTES
                     SDLVSTPIATVRSGAQGTEYTVSGKIISLVNGWGGNGFYLQDSDGAGIYIYPGAALGY
                     QPGDTVQLTGTLGEYKGELQLTTVSNHKAISEHFNAPITETNIAQLATQAQATLVSLK
                     NLTVGDIQSDSYQNSTFTVTDSEGQTVDVRLDSRTGIKTADLLNHINKGDKINLTAIL
                     STYNGKIQLKPFDLSHFEVVEKATTETAPGKTETVTVGHIQGASHQSPLTNQSVILKN
                     VVVTYVTSANNFYVQDVTPDGDVKTSDGINIFTDKLKTNVKVGDLVTIAGRVEEYLGK
                     GYTERGKTDLTITQIRATEVTVDGTAPVPSPIVLGLDRTIPADIIDNDGLAQFDPEQD
                     ALDFWESVEGMVVAVDDAKILGPLKNKEIYVTPATSQLPLNNVGGVNLRPEGNNTNII
                     PLLLKNGKQIVKSGDYFTGRIAGPVTYSYTNYKVYVDDSTLPTLHEGATKPETTTIVP
                     NDDKLTIASYNIENFSADSKSTSDAKVQRIAKSFVSDLHSPDIIGLIEVQDNNGATND
                     GTTDASKSAERLIAAIQAAGGPIYTYVDIAPENNKDGGQEGGNIRVGFLYNSKRVSLS
                     DKPSGTATQAIAWENGELNLSLGRIDPTNPAWAAVRKTLAAEFIFKGEKVVVLANHLN
                     SKRGDNGLYGKIQPVSFKSEEKRHILAQIIADFTKAGLAQNPNANIVMLGDFNDYEFT
                     KTIEILETGGMANLVSRHDASDRFSYFYNGNNQSLDNMLVSTNLLERYAFDMVHVNSA
                     FMEEHGRASDHDPLLVQLDVTKAQEPTQPEPSDKQTDDSGTVNNSDDNGTTNNNKPTN
                     LSTSNQTAVNTDDRSGATDKGQTTVTPTANNSQKKILPKTGGETSFVLITIGLVILSA
                     CLVKKQKES"
BASE COUNT         4016 a         2710 c         3357 g         4128 t
ORIGIN      
        1 cgcaatgtgg tgccttatgg tacgtttaaa tagtattttc accccagcgt ttgctgggct
       61 ttttttgttt gcctgaaata cagtaaaata cagtagtcta ttcgttcaaa attgccattt
      121 tgtcaataat ggttgcgaga tttgatttct attttgataa aatgggcaaa atgacaaaaa
      181 agaaaaacat ttgtaaaaaa tacgtgttta tagttgacaa gtgttaaaaa caagtgtata
      241 atataattaa agataaggaa aggagataag ccaatgacag agcgagagct taagaagatt
      301 gctaagaagc aaggtttcag taaaacaaac tttggcaaag ggtctcacga ggtttggaaa
      361 catccagacg gacggacagt gacgataccg aaacctaaag agaaggatta cagaccaggc
      421 acactaagca acattctcaa agtcttgtat ggggagtgag tgaactcctc cctgtccccc
      481 ctaaaggggt tactctaatc attggcttaa tctatcacta tgaaatataa ttatttagca
      541 ttgtttgaag cagataagga aaatggtggc tacagcattt ctttccctga tttccctgga
      601 gcatttagcg aagctgacaa tctaagtgaa gccattttca acgctcgtga agttcttgaa
      661 atctatacca tcatgtttga agacgagggt aaagaatttc ctaaaccatc atcattcaaa
      721 gcacttgcaa gcaacctaac aagcgatgat gatgtgatac aggctatctc tgttgatacc
      781 gaacttgtcc gtgagcgtga acgctctaaa atcgtcaata agaccgtcac actaccaagc
      841 tggcttgttg aaattggaaa agaaaacaag gtcaacttta gccagctatt acaaaaagca
      901 atccgtgagg aattgcaggt atagtaattc tctctgtgat agcagagagt ttttctcttt
      961 ttcaaaaggt attcgtccga aattcgtccg aaattatttt caaacttaac cgaatttaac
     1021 cgaatgaaaa atcaaaaaag cccgaaaaat cgggcttttg acttgtataa attcggataa
     1081 aatcctataa taaaggcggt agacggattt gaaccgacga tcaagctttt gcagagccgt
     1141 gccttaccac ttggctatac cgccataaca aagaatattg tatcttaaat cctggaaatg
     1201 gtcaagtgga aattttagaa tcagcccaat ttccagattt tacggtagac tagaacttac
     1261 tttgagaatt tttggatggc agattttcat gaatttctct gctattttac ttgaaaacat
     1321 acaggtattc tgatatacta atagagttgc tgtgcaacaa atactcatct cggaccaatt
     1381 gtggtcttgt tgccgaaagg ttgggctgca agtcgaagtt cgggagagga gaaaaaacaa
     1441 aaaggagaaa tactcatggc agtaatttca atgaaacaac ttcttgaggc tggtgtacac
     1501 ttcggtcacc aaactcgtcg ctggaatcct aagatggcta aatacatctt cacagagcgt
     1561 aacggtatcc acgttatcga cttgcaacaa actgtaaaat tggctgacca agcttacgaa
     1621 ttcatccgtg acgctgcagc aaacgacgca gttatcttgt tcgtaggtac taaaaaacaa
     1681 gctgctgaag ctgttaaaga cgaagctatc cgtgcaggtc aatacttcat caaccaccgt
     1741 tggttgggtg gaactcttac aaactggggt acaatccaaa aacgtatcgc tcgtttgaaa
     1801 gaaatcaacc gtatggaaga agatggaact ttcgaagtgc ttcctaagaa agaagtagca
     1861 ttgttgaaca aacaacgtgc tcgtcttgaa aaattcttgg gcggtatcgc tgacatgcca
     1921 cgcattccag acgtaatgtt cgttgttgac ccacacaaag agcaaatcgc tgttaaagaa
     1981 gctaagaaat tgggtatccc agttgtagcg atggttgaca caaacactga tccagatgat
     2041 attgatgtta tcatcccagc taacgatgac gctatccgcg ctgttaaatt gatcacagct
     2101 aaaatggctg acgctatcat cgaaggcaac caaggtgaag acagcgtagc agcagttgaa
     2161 gctgaaatgg cagctgagcc agcatctaca gaatcaatcg aagaattggt tgaagttgta
     2221 gaaggaaaat aagtaacgaa ggcgaattaa aatctatagg ttttagctcg tgtacaattc
     2281 caaacaacaa aaacaatcct agaggggcag ggctgagccc gctcctctat tttataaata
     2341 caaacaagga gaatagacat ggcagaaatt acagcagctc tcgttaaaga attgcgtgaa
     2401 aaatcaggtg ctggcgttat ggacgcgaaa aaagcattgg ttgaaactga aggtgatatc
     2461 gaaaaagcga ttgaattgct tcgcgaaaaa ggtatggcta aggcagctaa gaaagctgac
     2521 cgtgtagcag ctgaaggttt gacaggtgtt tacgttgatg gtaacgtagc agcagttgtt
     2581 gaagttaacg ctgaaacaga cttcgttgcg aaaaatgctc aattcgttga attggtaaac
     2641 actactgcta aagtaattgc agaaggtaaa ccagctgaca acgaagcagc tcttaaattg
     2701 gctatgcctt caggtgaaac ccttgaagaa gcatacgtaa acgcaactgc aacaatcggt
     2761 gagaaaatct cattccgtcg ctttgctttg gttgaaaaaa cagatgctca agcatttggt
     2821 gcataccaac ataacggcgg ccgtatcggt gttatctcag ttgttgaagg tggcgacgaa
     2881 actcttgcaa aacaaatctc aatgcacatc gctgcgatga aaccaactgt tctttcttac
     2941 actgaattgg atgagcaatt cgttaaagat gagttggcac aaatcaacca caaaatcgaa
     3001 caagacaacg aaagccgtgc aatggttgac aaaccagcat tgccattgtt gaaatacggt
     3061 tcaaaagctc aattgactga cgaagtgatt gcagcagctg aagaagctat caaagcagaa
     3121 ttagtagcag aaggcaaacc agaaaaaatc tgggataaaa tcatcccagg taaaatggat
     3181 cgcttcttgc ttgacaacac tcaagttgac caagcttaca cacttcttgc acaagtgtac
     3241 atcatggacg acagcaaaac agttgaagct tacttgaact cagtaaatgc ttcagttgta
     3301 gaatttgctc gtttcgaagt gggtgaaggt atcgagaaag cttcaaacga ctttgaagca
     3361 gaagttgcag ctacaatggc agcagctctt ggtaaataag atataacgaa gaacttccga
     3421 cagggagttc ttttttggca aaatcggtct tagggcggat gtcggatatg cttgattcgg
     3481 ttatactagt atcaatccta aatatttttc ataatctcct taaaaagcac cggccttgtg
     3541 gtcggtgctt tttgtctgtt atgcattagt cttgaataaa agccgcaatt tcttcttcgg
     3601 tcatgctgga atcgcagcgg acttggacac cagtagattt agcgaccagg aggcctggaa
     3661 cagttgggac ttggtagtgg tcgcggaggg cctggagttc tggactgatt tggctggagt
     3721 cgaggaagtg gacggtcact tgcttgtctt gggctacctt gtggagtttt ggtgcgaagc
     3781 ggttgcagta aggacaggtt gctcgtccga tgaagagaac agccctctct ttggtggcta
     3841 gaaggttctg tgcctgctcc acagtcacac ttgtaaagtc ttgaatgtaa tcttgaaagt
     3901 tcatggtata agatataaag ggccttaagt ggacacagaa aaaataggaa acagaacgac
     3961 gactagttct cgtttatctt tttgccctag tccgtagccc gtattcagtt caactaaata
     4021 cggaagccct agtcctttct gttttttctt ttattatagg ataaagcaga gcagatttca
     4081 aaattctgct acgctagttg ctaggctttt gctttcaaaa ttcgtcattt taaggtataa
     4141 tggtcaaaga tagtcaaaga aagaggcgat actatggcga tgaagaatac atcggattat
     4201 atagaagagc acatcaaagc catcttggac caagtcagtg tagctgagtt gcgtcgaagt
     4261 gaattggcta gtcggtttga agtggtgcca agtcagatta actacgtcat taaaactcgt
     4321 tttacagcca gccgtggcta tattgttgag agtaagcgtg gtggtggtgg ttatatccga
     4381 attgggcgga ttaccttttc ggataagcac gaactggtcc atgatttgtt aaacaatatg
     4441 ggtgagcagt tgtctgcgac ggtttatgcg gatattttac agctcctttt tgatgaagga
     4501 ttgatgacag aacgagaagg caatctcttt ttgtccacag gatctgatga aatattagga
     4561 aaagatgcaa gtaccattcg agcacgcatg atgcgtcaaa tactacgacg tttagatagg
     4621 aaagaggaat aattcatgaa aatttcaact ggtttacagc gggtttttga agatgcccag
     4681 ttagtggccc aacgttatgc ctgtgattac ttggaaacct ggcatgttct cttgtctttc
     4741 gttatcaacc atgatacagt cgctggcgct gttttggcag aatatcctat ttcaatttct
     4801 gactatgaac atgcaacttt tgttgtgacc gacaaggtct atcgtgaaga gttggatagt
     4861 tttcgtattt taccatcttc taaacgtttg gatgaaacag ctagttttgc caagaaaatt
     4921 gcagaagtcg tcaaggctaa ggagttggga acggaacatt tgtttatggc tatgttgttg
     4981 gacaagcggt caacagctag tcagattttg gacaaggtag gtttttgttt tgaagactca
     5041 gatgataagt ttcgtttctt ggatttgcgt aaaaacttgg aggcacgtgc gggatttacc
     5101 aaagaggacc ttaaagctat ccgcagtgtg atgaagggtg gcaaagccaa acctgccaat
     5161 atgggacaga tgatgggaat gcccccagca cctcaaagtg gtggattaga agactacact
     5221 cgtgatttga cagctttggc gcgtgaaggg aagattgaac ctgtcatcgg tcgagacgct
     5281 gagattgcac ggatgatcca aattctatca cgtaaaacca agaataaccc agttctagtt
     5341 ggtgatgctg gtgtcggaaa aactgtgctt gctttgggtc ttgctcaacg tgttgctgca
     5401 ggtgatgttc ctgtcagctt agctaagatg cgggttttgg aacttgactt gatgaacgtt
     5461 atcgctggaa ctcgtttccg tggtgatttc gaagagcgga tgaataatat catcaacgac
     5521 atcgaggaag atggtcaggt catccttttc atcgatgagt tgcataccat tatgggttct
     5581 ggctcgggga ttgattcgac cttggacgca gccaatatcc tcaaaccagc tcttgctcgt
     5641 ggcaccctcc gtacggtcgg agcgacgact cagacagagt accaaaagca tattgagaaa
     5701 gacgcagccc tggttcgtcg ttttgccaaa gtgaccattg aagagccgac agtggaagat
     5761 agcattgcca ttttgactgg tttaaaaggt acttttgaaa aataccacag ggtccgtatt
     5821 ggacaagcaa ctgtagagac tgctgtgacc tacgctaagc ggtatttgac cagtaaaaac
     5881 ctgccagatt cagccattga cttgctggat gaagccagtg caacggtaca aaatcgagtg
     5941 aaagggcagg ctgaggaaac aggactgacg agcatagaca aggccttgat ggataaaaaa
     6001 tataagactg tcagcaagct tttgattaaa acgaaagaag atgccgaggc tagtcaaaac
     6061 tatgacattg aagtaacaga agaagatgtt ttagagacac ttagtcgctt gtcaggtatc
     6121 acagtagcca agcttagcca atcagatact aagaagtatc tgaatctgga agcagaattg
     6181 cacaagcgtg tgattgggca ggaagaagct atttctgcag ttagcagagc tattcgccgt
     6241 aatcagtcag ggattcgtac aggtcgcaga ccgattggct cctttatgtt cttgggacca
     6301 actggtgtcg gtaagacaga gcttgctaaa gccttggcag aggttctctt tgatgatgaa
     6361 tccgctctta tccgttttga tatgtctgag tatatggaga aatttgcgac cagccgtctc
     6421 aatggagcgc cgccaggcta cgtgggctat gaagaaggtg gcgaattgac ggaaaaagtt
     6481 cgtaacaaac cttattctgt tcttcttttt gatgaggttg aaaaggctca tccagatatt
     6541 ttcaatgttc tcttgcaggt cttggatgat ggtgtcttga cggacagtaa gggacgtaag
     6601 gttgatttct caaataccat tattatcatg acgtcaaacc ttggagcaac agctcttcgg
     6661 gatgataaga cagttggctt tggtgccctt gatttatcta aggatcacaa ggaagtggag
     6721 aaacgcattt ttgaggaatt gaaaaaagcc tatcgtccag aatttatcaa ccgtattgac
     6781 gagaaagttg tcttccatag cttgacagaa tcccatatgc aggatgttgt caaggtcatg
     6841 attaaacctt tattggctgt aacagctgag aaaggaatta cccttaaact gcaaccgtca
     6901 gcccttaagt tattggctaa acaaggttac gacccagaaa tgggggctcg tccgctacgt
     6961 aggctcttac aaaccaaatt ggaagatccg ttggcagaaa tgttgctccg tggtgacttg
     7021 actactggtt cgaccttgaa ggttggggtc aagggtgaag agctcaagtt tgatgtggta
     7081 aagggataag gagtgctcgt tgttgctatc ctttccagat gcagaattat tcttccgttt
     7141 tgaaaaacgc atgaaatagt tggagaggtg agcttgctcg cctctttaac gattagaagg
     7201 gaaatctatg aatcaaacca tagctgttgt tttcggaact tttgtcccca tgcacaaggg
     7261 acacttggat ttgattgaac gagcaaagtt agcttgcggt caggtttgtg tcgtggtgtc
     7321 gggctatgat agggatcgtg gggataggat aggtttagac ctggccaaac gatttcaatt
     7381 tgctcaagag cagtttaagg aagatgattt ggtgagagtt tgtgcgcttg atgaaaccga
     7441 cttgccagcc tatccagatg gttgggacct ttggctagac cgcttgcttg ctttgttgga
     7501 cttgtctgag catcaagtac caatcttcta tgtgtccgag gaagaatacg ctcaggaact
     7561 gcacagtcga ggctatcaag cgcatttcag tcctagaaaa tttggtattt cagcgaccct
     7621 cattcgtgaa caacctcaac aatatcagga ttacattgct cctgcctttc ttgccttttt
     7681 tgaaaaggaa agcctgtaaa acaacataga aaaaacgcat aaaatcaggt tacagcctag
     7741 gttttatgct ttttttacta cggattttta cggaaattcc atgtattcta acgaacgttc
     7801 gtaaatgtct tgtatatatg caaaaaaatt caaaattttt tgactgtttt aattttattt
     7861 gttactatat actcataaaa aaaggaggtg gttcttatga aaaagaatct tttgaaaaaa
     7921 acgatcgttt gttttattaa cttgcttgtt gtgttgatgg cagttgctcc accagcagtg
     7981 tctgctcaag ctgctagtcg aatcgaaaca cctgttgaaa caaaatcgaa gcatttttcg
     8041 aatttagaag gtggtggaga tttatcctat attaaccttt ctggttattc aaatagattc
     8101 ggaacagcgg catctggtag atctggtaca tatttcggac caagaggaac ttatgtgact
     8161 agagattggt ctgttaattc tggaggagga tcacatggag gaagttattg gaagctattt
     8221 aatcgaaatg gtcaacgaat aggtacatat gacaagtatg gaaattacct acgtccatag
     8281 taaataaact aggagaaata tgcaaattat tcaattaaat aattttgaaa ttaagatttc
     8341 agaaagatta cactctattt atgatggcaa aaacaagata ttagttatct ttccagacca
     8401 taccgcaatc tgctgtcagg taaaactttc tcaaacaggc ggattcttgg tagatacatt
     8461 ttggggtgtg gaatatgaga tttcaggcaa catggtaact atctattaca cggatgagga
     8521 ggaattggaa tgaaacagta tttatttaga cagcatacta tccatgttca tccaagttta
     8581 aatgttttca tcggaaatga tgaagcagaa atggttctct atagcaaaga accagatttc
     8641 acacttttag ccttgctaag atggttacca gataaaaatt ctattcgtat tattaaccgt
     8701 tggaaattaa cctatgaata cgacggtaac aataatatct acattcatta tgattccgac
     8761 tatcgttact aaaaataaga gttgaggttc taatctatag aaaaaacgca taaaatcaag
     8821 ttatcatctt ggctttatgc gtttttctat ttcattgttg gcgagcttta acctgccagt
     8881 ttatcttatt tagcaatccg ttcttgatag gcttctcgtg cttggtcaaa tagttcttgg
     8941 acctgctcga tagtctctgc tcgggcaacg gcgccacgaa tcttggcagc acctgctgag
     9001 ccacggagat agtggggagc taggccacgg aattcgcgga cggcaactga ctcgccttta
     9061 agattggtca atcgggtcag gtggtcgaag gcgacattga gtttgtcatc gaaggagagg
     9121 tcggggagga cttctcctgt ttcaagatag tggttgattt ggttgaagat gtaaggattt
     9181 cccatagcag tccgtccgac catgacagca tcagcaccga cttcctcgat tcgctggcgg
     9241 gcatcttgga cattacggat gtcgccgttt gcgatgaagg gaatcttggt caggctgcca
     9301 gctaccttgg tcaaggtctc taggtcaact gttcctgtgt acatctgctc gcgggtccgc
     9361 ccgtgcatgg ccagggcaga cacaccggca ctttctgcgg ccagggcatt ttcgaccgct
     9421 aggtcggtat tgttccaacc cgtccgcatc ttaactgtca agggaatatc aaggaccgag
     9481 gtcacttcct tgatgatgtg gtaaatcttg tcggggtcct tgagccactt agcaccagct
     9541 tcgtttttaa cgaccttgtt gacagggcag cccatgttaa tatctacgat attagctttg
     9601 gtgttggttt gaatgaagtc ggcagcccgt ttcagtcctt cggcgtcgcc accaaaaagc
     9661 tggatggaca tagggtattc gttgtcgtca atatggagca tatggagggt cttctcgttg
     9721 ttgtagagaa ggcctttttc agaaatcatt tccataacga ccagacctgc gcccatttct
     9781 ttggcaatgg tacggaaggc cgagttggtc acgccagcca ttggggccag cacgcagcga
     9841 ttggggattt ctacatcacc aatcataaaa ggggtattga gattagccat tgatgagttc
     9901 ctccaaatcg ttttcgtcaa agtggtaatg ggtctggcag aattgacagg tgatgtccac
     9961 acctttgtct tcttccttca tctcttgcag gtccgctttt ggcaagctgg ctagagcatc
    10021 gaggaagcgg tctttagagc agtcgcagac aaagccgatt tcttcttctg acaggcgttt
    10081 gaagtcgtcg tcgccataaa tggcggatag cagagcttct atgtggtttt cagaagccag
    10141 caagcttgaa atggcaggca tttcttggat gcgtttttcg aaacgggcaa tttcagcctc
    10201 agtcgcacct ggtaaaactt gcagcaagaa tccgccagct accttgacct tgtcttcttc
    10261 atccaataaa acattgagcc ccaccgcaga tggtgtctgc tggctgtctg tcaagaaata
    10321 ggcaaagtct tcaccgattt caccagagat taagggggtc atggaattgt aaggatgccc
    10381 tgttccgtag tctgtgataa ccaggaattg tccgttccct acaagaggcc caacgatgac
    10441 ttcgccagtc gctgttcgtt tgtagtccaa gtctggattt tgaatgtagc ccttgacctg
    10501 acctttggta ttggcaacgg agatgatagc cccaatagca ccgctggcca agattttcag
    10561 ggtgatcttg gtatcgcctt tttcgttggc agccaaaatc tgattggcaa tgagagtgcg
    10621 acccagagca acggttgatg aagccatggt gtcgtgtttt tcttgggctg ttttcacggt
    10681 ttctgtgcta tccagcacga aggcacggaa atgcccgctt tttgatagtg ttttaataat
    10741 tttatccata actttaatta tagcacaagt ggaggtgaag cagtagaaaa atgagcctga
    10801 aagtcatgct ttcaagctca aaaaatgatt aggattcttt ttgttttttg acaaggcagg
    10861 cgctcaagat tacgagaccg attgtgataa gtacaaagct tgtttctcct cctgtctttg
    10921 gaaggatttt cttttgactg ttgttggcag taggggtcac ggttgtttgt cccttgtctg
    10981 tagcgccaga acggtcatca gtatttacag ctgtttgatt agaagttgaa agatttgttg
    11041 gcttgttatt gttggtcgta ccattgtcat cactattatt gactgttcct gagtcatctg
    11101 tctgcttgtc gcttggttct ggttgagttg gttcttgtgc ctttgtcaca tccagttgta
    11161 ccaatagtgg atcgtggtca gaagctctgc catgttcttc cataaaggct gaattgacat
    11221 ggaccatatc aaaggcatag cgctccaaca agttagttga tactagcata ttgtcaagag
    11281 actgattgtt tccgttatag aagtaagaga agcgatcgga tgcatcgtga cgactaacga
    11341 ggttagccat tcctcctgtt tctaaaattt ctatggtttt agtaaattca tagtcattga
    11401 agtcgcctag cataacgata ttagcatttg gattttgagc taagcctgct tttgtaaagt
    11461 cagcgataat ttgtgctagt atgtggcgtt tttcttcgga cttgaagctg acaggttgga
    11521 tttttccgta gagaccattg tcaccgcgtt ttgagttgag atggttggca aggacaacga
    11581 ctttctcgcc tttgaagatg aattcagctg caagtgtttt gcggacagct gcccaagcag
    11641 ggttggttgg gtcgattcgg cccaggctga gattgagttc gccgttttcc catgcaattg
    11701 cctgtgttgc ggtaccgctt ggtttgtcag ataggctgac acgttttgag ttgtagagga
    11761 agccgacgcg aatattgcct ccctcttgtc cgccgtcttt gttgttttca ggagcaatat
    11821 ccacataggt atagattggt ccgccggctg cttgaatggc tgcaatcagg cgctcagcac
    11881 tcttactagc atcagttgtg ccgtcatttg tagcaccgtt gttgtcctgc acttcaatca
    11941 atccgataat atctggagaa tgtaggtctg aaacaaagga tttggcaata cgttggactt
    12001 tagcgtctga tgttgactta ctgtcagcag aaaagttttc aatgttataa gaagcgatag
    12061 tcagcttgtc atcatttggg acaatggttg tagtttctgg ttttgtagct ccttcgtgca
    12121 aggttggaag ggtgctatca tctacataga ctttataatt ggtgtaagag taggtaactg
    12181 gtccagcgat acgaccggtg aaatagtctc ctgatttgac gatctgtttt ccatttttca
    12241 aaagtagagg gatgatattg gtattattcc cttcagggcg aaggttgacg cctccaacat
    12301 tatttaaagg aagttgacta gtggcaggag tgacatatat ttccttgttt tttagtggac
    12361 caaggatttt tgcatcatcc acggcaacca ccatgccttc aacggattcc cagaaatcga
    12421 gcgcatcttg ttctggatca aattgagcca aaccgtcgtt gtcaataata tctgctggga
    12481 tggtccgatc aagaccaagg actataggag atggtacagg tgcagtccca tccacagtta
    12541 cttcagtagc tcgaatttgt gtgatggtta agtctgtttt cccacgttct gtataacctt
    12601 ttccgaggta ttcttctaca cgtcctgcga tagtgacaag atctcctacc ttgacattgg
    12661 tttttaattt gtcagtaaaa atattaatac cgtcagatgt tttgacgtct ccatctggtg
    12721 tgacatcttg cacgtagaag ttattggcag aggtaacgta ggttactacg acgtttttaa
    12781 gaatcacaga ttgattggtt agaggtgatt ggtgacttgc accttgaatg tgaccgactg
    12841 ttacagtttc ggtcttgcct ggtgctgtct ctgttgttgc cttttcaacg acttcaaaat
    12901 gagagaggtc aaatggtttt aattgtattt ttccattata ggtggataaa atagcggtta
    12961 gattaatctt atctcccttg ttgatatggt tcaaaagatc agccgttttg atacctgttc
    13021 gactatctaa acgcacatcc acagtttgtc cttcggaatc agttacggta aaggtagaat
    13081 tttgatagct atcgctttga atatctccga cagtcaagtt ttttagagaa actagtgttg
    13141 cctgtgcttg cgttgctaac tgagcgatgt ttgtttctgt aatgggagcg ttgaaatgct
    13201 cagatatagc cttgtggttg ctaactgtgg ttagttggag ttcgccttta tactcaccca
    13261 atgttcctgt taattgaacg gtatcaccag gctgatagcc caaggcagcc ccagggtaga
    13321 tatagatacc agcaccgtca gaatcttgga ggtaaaagcc atttcctccc caaccgttta
    13381 ctaggctaat aattttacca gaaacggtgt actctgttcc ttgtgcacca gagcgaacag
    13441 tagcaatcgg tgtagaaaca aggtcacttg actcggtagt cgtattttca cttgttggtg
    13501 gctgaacatt agtagaagat gaatctacga tttcaatcgc tgtagctggt ttgattccag
    13561 ctcgcttcat gtatgtatcg ctagttcctg tgatgcgaac caattttccg actagttcgg
    13621 gatgatcaac gaggttgaat tggctgcgaa gaggttcttt tagttgaata gggatagtgt
    13681 cggcggccgc agtatccatg cttgcaccaa gggctagatt tgttttgtta gtggcgtcaa
    13741 aagcagttcc gctactatta agtggtgcaa taagataacc ttgtatcgtg acttccgact
    13801 tggttattgc aagtgacgga taattctcta tcgccacttc agtagcgtgc acagatggta
    13861 tgggcgaagt agcaagacta agcaagagtc cggctgttac cgctacagaa cctacggtat
    13921 agaagagaga atggtttcta atcttcatat aaaactcctt tttattatat atggacgtta
    13981 tcaaaacgtc tgcagttgtt atatatatat agtttaacaa aaaatgagtc gtttggaata
    14041 cttttttaga tataatacgg atatttttaa aaattcaaat gaaatagcaa aaatacatta
    14101 gaaaacaaaa caaaaaacga acaatagagt ggaatgctgg gaattagttc ataaaaagca
    14161 ccgagatata aatgattatc ttggtgccat attcatttta tttaacatta g
//
LOCUS       DASFRC010000046        13868 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.046, whole genome shotgun sequence.
ACCESSION   DASFRC010000046 DASFRC010000000
VERSION     DASFRC010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 13868)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13868)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13868
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.046"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(433..1482)
                     /locus_tag="U1087_000978"
     CDS             complement(433..1482)
                     /locus_tag="U1087_000978"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012744.1,HMM:NF024831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEM4755473.1"
                     /translation="MSKIRVMHLLKSNRYSGAENVVCQIIESTRNQSNDYEMIYVSPK
                     GPIEGILEDKDINFFGLNNFTQKEIGRAIDLLNPDIIHAHDFSASVRVSKYNRKIISH
                     LHNNPTWFSKLDYRTLIYTFSIHRFKRIIGVSRSIQNEYIFKNKLNKKFLVLPNVVDK
                     TKVLNLANEESYSSDLLFVGRLSREKDPLFFLQIVKKLVESNPNIQAIMVGDGALLNE
                     CEEYIVSNSLFNNVKMVGFEQNPYKYMSKTKILIMTSVYEGFGLVAIEAMLLGKPVVC
                     RLVGGLVDILDNETGAFCTTIDEFVFTITQLLANSSDIKLRETKAVERAQRYCDISSF
                     QQTLDTLYKEILGLG"
     gene            complement(1592..2698)
                     /locus_tag="U1087_000979"
     CDS             complement(1592..2698)
                     /locus_tag="U1087_000979"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012744.1,HMM:NF024868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEM4755474.1"
                     /translation="MKKALIISTVSRQFYLFEQVNIKILKELGYEIHGAANFSDRSER
                     LKEVNIIEHHVEFSRNPLSIRNIFAFKKLLLIIRENKFDLIHAHSPVGGVYGRLAAKI
                     CNVPRIIYTAHGFHFFKGAPQQNWLIYYPVEKLMSYLTDVLIVINEEDYKLAKSKFKL
                     KQINFVSGIGVNYSKFKPISFEKKIEKRRQFGFTENDQILIYVGELNHGKNQGVLIEA
                     MSEIVKKNPKVSLLLVGQGKLFSEYQEKIHNYNLQNNVHLLGYRDDVVDLLQIADIAI
                     SSSLREGLPVNLLEAMGVALPLLVSDCRGNRDLVTDNGIVIHDNIAKEWEKTILDLFD
                     SPSKLREFGLNSLSHVKDFSEEQIRKKMLEIYTD"
     gene            complement(2695..3312)
                     /locus_tag="U1087_000980"
     CDS             complement(2695..3312)
                     /locus_tag="U1087_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007893185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM4755475.1"
                     /translation="MKEKYQILFNPSANEIEQVVAIHLATFEGFFLTFLGKGFLKNLY
                     TGFLEHPSSELMLITQDNNVVGFLAYSKNISAFYKWLLKNKFFQFLWYSFGATIRNPK
                     ASIRLLRALTYPQKSQSEDSYVELSSIGVNPDYTNHGLGSILITEFVKRQNFSEIKYI
                     RLATDAINNDKVNAFYKKNGFQLYSTYFTPEGRKMNEYRYYGDET"
     gene            complement(3309..4538)
                     /locus_tag="U1087_000981"
     CDS             complement(3309..4538)
                     /locus_tag="U1087_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006148974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HEM4755476.1"
                     /translation="MTKRQNIPFSPPDITQAEIDEVIDTLKSGWITTGPKTKELERRL
                     SVFTGTNKTVCLNSATAGLELVLRVLGVGPGDEVVVPAMTYTASCSVITHVGATPVMV
                     DIQKNSFEMDYDALEKAITPKTKVIIPVDLAGIPCDYDKIYTIVENKRSLYVASDNKW
                     QKLFGRVIILSDSAHSLGASYKGKPAGSLADFTSFSFHAVKNFTTAEGGSVTWRSHPD
                     LDDEEMYKEFQIYSLHGQTKDALAKTQLGSWEYDIVIPGYKCNMTDIMAGIGLVQLER
                     YPSMLNRRREIIEKYNVGFEGTLIKPLVHLTEDKQSSMHLYITHLQGFTLEQRNEVIQ
                     KMAEAGIACNVHYKPLPLLTAYKNLGFEMKDFPNAYQYFENEITLPLHTNLSDEDVEY
                     IVHTIVNIISNFESGKH"
     gene            complement(4548..5246)
                     /locus_tag="U1087_000982"
     CDS             complement(4548..5246)
                     /locus_tag="U1087_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEM4755477.1"
                     /translation="MHSGRTITKEYLKANEITGQYFDKIETRKFELFLKYTTDKLLAL
                     ILLVLLSPVIIALSIWIKLDSKGPVFYRQERVTRYGRIFRIFKFRTMISDADKVGSLV
                     TVGQDNRITKVGHIIRKYRLDELPQLFNVLTGDMSFVGVRPEVQNYVDQYTDEMLATL
                     LLPAGITSPASIAYKDEDIVLEKYCSQGYSPDEAYVQKVLPEKMKYNLEYIRNFGIIS
                     DFKVMIDTVLKVIK"
     gene            complement(5272..5988)
                     /locus_tag="U1087_000983"
     CDS             complement(5272..5988)
                     /locus_tag="U1087_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HEM4755478.1"
                     /translation="MLGHRLVREKENRIKGGLYHKIQIELAFNSNHIEGSQLTYDQTR
                     YIYETNTIGFEENSTIKVDDIIETTNHFTAFDFLLDSFQDDLNETWIKEIHAILKRGT
                     SDSRKSWFQVGDYKSYPNEVGGRETTLPEKVESDMQELLNSYHRLPEISFEDILDFHV
                     RFERIHPFQDGNGRVGRLIMFKECLKHGHVPFIIGDDMKYFYYRGLAEWGEQNGFLLD
                     TCLAAQDRFKQYLEYFRVED"
     gene            complement(6074..7900)
                     /locus_tag="U1087_000984"
     CDS             complement(6074..7900)
                     /locus_tag="U1087_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HEM4755479.1"
                     /translation="MDLGTVTDKLLDRNSKRLILMCMDMCLIIVSMILSRLFLDVIID
                     IPDERFILAVLFVLIFYLIISVRLKVFSLITRYTGYQSYVKIGLSLISAYSLFLIISM
                     ILWQTFSYCFILVSLFLSYVMLITPRIVWKVLHETRKNVIRKKDSPLRILVVGAGDGG
                     NIFINTVEDRKLNFEIVGIVDCDPNKLGTFIRTAKVLGNRNDIPRLVEELAVDQVTIA
                     IPSLNGKEREKIVEICNTTGVTVNNMPSIEDIMAGNMSVSAFQEIDVVDLLGRPEVVL
                     DQDELNQFFKGKTILVTGAGGSIGSELCRQIAKFMPKRLMLLGHGENSIYLIHRELLE
                     KYQGKIELVPLIADIQDRELIFSIMADYQPDVVYHAAAHKHVPLMEYNPHEAVKNNIF
                     GTKNVAEAAKTAKVAKFVMVSTDKAVNPPNVMGATKRVAEMIVTGLNEPGQTQFAAVR
                     FGNVLGSRGSVVPLFKEQIRKGGPVTVTDFRMTRYFMTIPEASRLVIQAGHLAKGGEI
                     FVLDMGEPVQILELARKVILLSGHTEEEIGIVESGIRPGEKLYEELLSTEEHVSEQIY
                     EKIFVGRVTNKQSDIVNSFINGLLQKDRNELKDVLIEFAKQE"
     gene            complement(7929..8660)
                     /locus_tag="U1087_000985"
     CDS             complement(7929..8660)
                     /locus_tag="U1087_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000565352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine protein phosphatase"
                     /protein_id="HEM4755480.1"
                     /translation="MIDVHSHIIFGVDDGPKTIEESLSLIGEAYRQGVRYIVATSHRR
                     KGLFETPEKVIMTNFLQLKEAVAEVYPEIRLCYGAELYYSKDLLSKLEKKKVPTLNGS
                     RYILLEFSMNTPWKEIQEAVNEVTLLGLTPVLAHIERYDALAFHAGRVEELIDKGCYT
                     QVNSNHVLKPALIGDQAKEFKKRTRYFLEQDLVHCVASDMHNLSSRPPFMREAYKLIT
                     EEFSKDKAKALLKKNPLMLLKNQAI"
     gene            complement(8698..9384)
                     /locus_tag="U1087_000986"
     CDS             complement(8698..9384)
                     /locus_tag="U1087_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein kinase"
                     /protein_id="HEM4755481.1"
                     /translation="MGTLEIARTKKEFVNKTEEYFNAIRTNIQLSGEDIKVVGITSVQ
                     SNEGKSTTAASLAIAYARSGYKTVLVDADIRNSVMSGFFKPITKITGLTDYLAGTTDL
                     SRGLCETNIPNLTVIESGKISPNPTALLQSKNFENLLATLRRYFDYVVVDCPPLGMVI
                     DAAIIAQKCDAMVLVAEAGHVKRSAVKKVKEQLEQTGTQFLGVILNKYDIATEKYGDY
                     GNYGNYGKKA"
     gene            complement(9394..10083)
                     /locus_tag="U1087_000987"
     CDS             complement(9394..10083)
                     /locus_tag="U1087_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular biosynthesis protein CpsC"
                     /protein_id="HEM4755482.1"
                     /translation="MNNQEMNTIEIDILLLLKTIWRKKFFILLMGLLGAGLAFAYGSF
                     LVTPQYESTTRIYVVGRHAEAGAGLTNQDLQAGSYLVKDYKEIILSQDVLMQVATELN
                     LNGNLKEKVSVSIPVDTRIVSISVRDADPNEAARIANSLRTFASHKIIEVTKVSDVTT
                     LEEAVPAEDPSTPNTKRNILLGLLAGSILVTGLVLVMEILDDRVKRPQDIEEVMGLTL
                     LGVVPDSKKLK"
     gene            complement(10100..11539)
                     /locus_tag="U1087_000988"
     CDS             complement(10100..11539)
                     /locus_tag="U1087_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HEM4755483.1"
                     /translation="MKKRSRWRKSPKLKLVNFVLWGLYAVILCLFLVTMYRYNILDFR
                     YLNYIITILLIGIAVLTGLLMWRKKARIFTALLLIFSLVITSVGIYGMQEVVKFSTRL
                     NSNSTFSEYEMSILVPANSEITDVRQLTSILAPAEYDQDNITALLEDISKMESTQLVT
                     SPATSYLTAYQSMINGESQAMVFNGVFTNILENEDPDFSSKVKKIYSFKVTQTVETAT
                     KQVNGDSFNIYISGIDTYGPISSVSRSDVNIIMTINRATHKILLTTTPRDSYVAIADG
                     GQNQYDKLTHAGIYGVNASVHTLENLYGIDISNYIRLNFTSFLQLIDVVGGIDVENTQ
                     EFTSGEHTFPVGTVHLDAEQALIFVRERYSLANGDNDRGKNQEKVIAALIKKLSAPEN
                     LRNYQAILNSLEESIQTDLSIETIIDLVNTQLESDTQFTVESQALVGNGRTDLSSYAM
                     PGSQLYMMEINQDSLEQAKVSIQSVLDGN"
     gene            complement(11669..12403)
                     /gene="yaaA"
                     /locus_tag="U1087_000989"
     CDS             complement(11669..12403)
                     /gene="yaaA"
                     /locus_tag="U1087_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HEM4755484.1"
                     /translation="MKIIIPNAKEVNTNLENASFYPLPDRSKPVLDAISQFDVKKLAA
                     FYKLNESKAELEADRWHRIRTGQAKTYPAWQLYDGLMYRYMDRRGIDSKEENYLRDHV
                     RVATALYGLIHPFEFISPHRLDFQGSLKIGNQSLKQYWRPYYDQEVGDDELIFSLASS
                     EFEQVFSPQIQKRLVKILFVEEKAGQLKVHSTISKKGRGRLLSWLAKNNIQKLSDIQG
                     FKVDGFEYCTEKSTENQLTFIRSVKL"
     gene            12522..13781
                     /locus_tag="U1087_000990"
     CDS             12522..13781
                     /locus_tag="U1087_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HEM4755485.1"
                     /translation="MKKYQVIIQDILTGIEEHRFKRGEKLPSIRQLSEQYHCSKDTVQ
                     KAMLELKYQNKIYAVEKSGYYILEDRDFQDHTVELNPADFQELPYEDFRICLNESLIG
                     RENYLFNYYHQQEGLAELISSVQSLLMDYHVYTKKDQLVITAGSQQALYILTQMETWA
                     GKTEILIENPTYSRMIELIRHQGIPYQTIERDLDGIDLEELESIFQTGKIKFFYTIPR
                     LHNPLGSTYDIATKTAIVKLAKQYDVYIIEDDYLADFDSSHSLPLHYLDTDNRVIYIK
                     SFTPTLFPALRIGAISLPNQLRDSFIKHKSLIDYDTNLIMQKALSLYIDNGMFARNTQ
                     HLHHIYHAQWNKIKDCLEKYALNIPYRISKGSVTFQLSKGILSPSIQHMFEKCYYFSG
                     QKADFLQIFFEQDFADKLEQFVRYLNE"
BASE COUNT         4435 a         2846 c         2082 g         4505 t
ORIGIN      
        1 aaataaaaac gatataatca ttaagtattg tttcatagca tctgtaaaac tatttgccat
       61 caaacacaat gtaaattcta tgatagcaaa aaatgttatc gataagaaat aactttttct
      121 taatttacca gttagtataa ttaaaaagat tgagcataat ataaaagtag tataccaagt
      181 aagaggaaaa atagagtaac taatccctaa aatagaaatc attgacgttg gaatcccaat
      241 aatggtcagc aacaccaatg tttcaataac actataccta gcttttaaac tgtaaaaaca
      301 aaaagtaaaa aaagccatac ttgttaacga tataacaatc ggagggaata attgatagaa
      361 aatcattccg cttccaaaaa gtaaaaatat aaactctaaa ccataatttt ttttcatgct
      421 tcgaaccata aatcaaccca accctaatat ttctttataa agagtatcta aagtttgttg
      481 aaaagatgaa atatcacaat acctttgtgc tctttcgaca gccttagttt cacgaagttt
      541 aatatcacta gaattagcta gtaattgagt tattgtaaat acaaattcat caatcgttgt
      601 gcaaaacgca cccgtttcat tatctaaaat atcaaccaat cctccaacta gtctacaaac
      661 tacaggcttc cctaataaca tcgcttcaat tgcaactaaa ccgaatcctt catatacaga
      721 agtcataata agaattttag tttttgacat gtacttatat gggttttgtt caaaaccaac
      781 cattttaaca ttattaaata atgaattaga aacaatatat tcttcgcatt catttaataa
      841 agctccatct ccaaccataa tagcttgaat attaggattt gactcaacta gtttttttac
      901 aatctgtaaa aaaaacagtg gatctttttc tcttgataat ctacctacaa ataataaatc
      961 cgatgaatag ctctcttcat tagctaaatt taaaacttta gttttatcaa ctacattagg
     1021 cagaaccaag aattttttat tcaatttatt cttaaaaatg tactcatttt gaattgatct
     1081 cgatacacct attattctct tgaatctatg aatactaaat gtataaatca atgttctata
     1141 atctaatttg gaaaaccaag tcggattatt atgtaaatgg gaaataattt ttctgttata
     1201 cttagatact cggacacttg cactaaaatc atgtgcatga ataatatcag gatttaataa
     1261 atctatagca cgtcctatct ctttttgtgt aaaattattt aacccaaaga aattaatatc
     1321 cttatcttcc aaaattcctt caattgggcc ctttggggaa acatatatca tttcatagtc
     1381 atttgattga tttcttgtcg attcaattat ttgacatacc acattttctg caccagaata
     1441 tcgattgctt ttaagcaaat gcataactct gattttactc atcactttcc cccgaaatta
     1501 tttattattt tttcagaaca attcagataa aagtagttct gctgagttcc tgtaactcat
     1561 caatcttccc aaagtttaag aatgatgata cttaatcagt ataaatctcc aacatttttt
     1621 ttctaatttg ttcttccgaa aaatctttta catgactcaa actattcaaa ccaaattctc
     1681 tcaattttga cggtgaatca aaaagatcta atattgtctt ttcccattct ttcgctatat
     1741 tatcgtgtat cacaatgcca ttatctgtca ctaaatcacg atttccacga caatctgaaa
     1801 caagcaaagg aagggcaacc cccatggcct ccaacaaatt tactggtaag ccctctcgca
     1861 atgagcttga tattgcaata tcagctattt gcaataaatc aacaacatca tcacggtatc
     1921 caagcaaatg aacattattt tgtaaattat aattatgtat tttttcttga tattcagaaa
     1981 agagctttcc ttgtccaacc aataataatg aaacttttgg attttttttc acaatctctg
     2041 acatcgcttc gattagaacg ccttgatttt ttccatggtt caattcccca acatatatta
     2101 aaatttgatc attttcagta aaaccaaatt gtctcctttt ttcaatcttt ttttcaaaag
     2161 aaataggttt aaatttagaa tagtttaccc caatacctga tacaaaattt atttgtttaa
     2221 gtttaaattt gctctttgct aatttataat cttcctcgtt aataactatt aatacatctg
     2281 ttaaataaga cataagtttc tctaccggat aatatattaa ccaattttgt tgaggtgctc
     2341 ctttaaagaa atgaaaaccg tgggcagtat atattatccg aggaacatta caaattttag
     2401 ccgccaatct tccatataca cctcctacgg gtgaatgggc atgtattaag tcaaatttat
     2461 tttcacgtat aattaaaagt agttttttaa atgcaaaaat attacgaata gaaagaggat
     2521 ttcttgaaaa ttcaacgtga tgttcaataa tattaacctc cttcaatcgt tcactcctgt
     2581 cagaaaaatt tgccgcccca tgtatttcat aaccaagctc tttcaaaatt ttaatattta
     2641 cttgttcaaa aagataaaat tgtctactta cagttgaaat tattaatgcc tttttcacgt
     2701 ctcatcccca taatatctat attcattcat tttgcgacct tctggtgtga aatatgtact
     2761 gtatagttga aagccatttt ttttgtaaaa agcatttact ttatcattat ttattgcatc
     2821 tgtcgctaat ctgatatatt ttatttccga aaaattctgt cttttaacaa attcagtaat
     2881 aagaatactg cctaatccat gattagtata atcaggatta actccaattg aagaaagctc
     2941 aacataactg tcttcacttt gacttttctg tggataagta agagctctaa gtaatcggat
     3001 actcgcctta gggttacgaa tagtggctcc aaaactatac cacaaaaatt gaaaaaattt
     3061 atttttcagt aaccatttat aaaatgcact tatattttta gaatacgcta aaaaaccaac
     3121 aacattattg tcttgagtta ttaacataag ttctgaagat gggtgttcca aaaaaccagt
     3181 atacaagttt tttaaaaagc ctttccctaa aaaagttaga aaaaaacctt caaatgtggc
     3241 aagatgtatt gcaactactt gctcaatttc atttgcactt ggattaaata atatttgata
     3301 tttttctttc aatgtttgcc actttcaaaa ttagaaataa tattaacaat tgtatgcaca
     3361 atgtactcca catcttcatc actcaagttg gtatgaagcg gtagtgtaat ttcattttca
     3421 aaatactgat aggcattcgg aaaatctttc atttcaaaac caagattctt gtaggctgtg
     3481 agaagaggta atggtttgta gtgaacattg cacgcaatac ctgcttcagc cattttttga
     3541 atgacttcat ttcgttgttc caaagtaaaa ccttgcagat gcgtgatata caagtgcata
     3601 gatgattgtt tatcttccgt caggtgtacc aacggcttaa tcaaagtccc ctcaaagcct
     3661 acattgtatt tctcaatgat ttctctgcga cgattcaaca tagatgggta acgttctaat
     3721 tgtacaagac cgatacctgc cataatatct gtcatattgc acttgtaacc gggaataaca
     3781 atatcatatt cccaagaacc taactgtgtc ttagctagtg catcctttgt ctgaccatga
     3841 agagagtaaa tctgaaactc tttatacatc tcttcatcat ccaaatcagg atgtgatctc
     3901 catgtcacac tacctccttc agcagttgta aaattcttaa ctgcatgaaa agaaaatgag
     3961 gtaaaatctg ctagggaacc cgctggtttc cccttataac tagcacctag tgagtgtgca
     4021 ctatcagata ggataataac tcgcccgaaa agtttctgcc atttattatc agaagcaaca
     4081 tacaaagagc gtttgttttc tacgatggta taaatcttat cataatcaca aggaatacca
     4141 gctagatcaa caggaatgat aacttttgtt ttcggagtaa tcgctttttc caaagcatca
     4201 taatccattt caaagctgtt tttttgaata tcaaccatca caggagttgc tcctacatga
     4261 gtaatgacac tacatgaggc agtataggtc atagcaggaa caacaacttc gtcccccggc
     4321 ccaacaccaa gaactcgtaa gactagttct aatccagcag tagcagagtt taagcacacc
     4381 gttttattgg ttcctgtaaa tacagatagt cgacgttcta gctcttttgt ctttggtcct
     4441 gttgtaatcc aaccagattt tagtgtgtca ataacttcat caatttcagc ttgggtaata
     4501 tctggtggcg aaaacggaat attttgtctc tttgtcatat caatctccta ttttatcact
     4561 tttaatactg tatcaatcat tactttaaaa tcagaaataa ttccaaagtt tctgatatat
     4621 tccaaattgt atttcatttt ttctggtaac actttttgaa cataggcttc atctggacta
     4681 tagccctgag aacaatattt ttccaaaaca atgtcttcat ccttatatgc tatacttgct
     4741 ggtgaagtaa ttccggcagg taaaagtaag gttgcaagca tctcatcagt gtactgatct
     4801 acgtagtttt gcacttctgg tctcacacca acaaagctca tatcaccagt caaaacatta
     4861 aacagttgag gtagttcatc caacctatat tttctaataa tatgaccgac tttcgtaata
     4921 cgattatctt gaccgactgt gacaagactt ccgactttat ccgcatcaga aatcatcgtt
     4981 ctaaacttaa atattctaaa aattcgacca tatcttgtaa ctctttcttg acggtaaaaa
     5041 acgggtccct tactgtctag ttttatccaa atagataaag caatgatgac tggcgaaagt
     5101 aatactaata ggattagtgc taacaactta tctgtagtgt attttaaaaa taattcaaac
     5161 tttcttgttt caattttatc aaaatactga cctgttattt cattcgcttt tagatattct
     5221 tttgttatag ttcttccgct atgcattcat tctcctaatt gcaagttacc actaatcctc
     5281 aaccctaaaa tactccaaat actgcttaaa tctatcttgt gctgctagac aagtatccag
     5341 caagaaacca ttctgctctc cccactcggc taagccacga tagtaaaaat acttcatgtc
     5401 atctccgatg ataaagggga catggccatg tttgagacat tctttaaaca taatcaatcg
     5461 acctactcgc ccgttaccat cttggaaggg atgaatgcgt tcaaatcgaa catgaaagtc
     5521 aagaatatcc tcaaaggaaa tctcaggcaa gcggtgatag ctgttcagca attcttgcat
     5581 atcggattct actttttctg gcaaagtcgt ttcacgtccg ccaacttcat ttgggtacga
     5641 cttatagtct ccgacttgaa accatgactt ccgagaatca gaggttcctc tcttcaaaat
     5701 agcatgaatc tcctttatcc aagtttcatt caaatcatct tgaaagctat ctaagagaaa
     5761 atcaaaagcc gtaaaatgat tggtcgtttc gataatatca tccaccttta tggttgaatt
     5821 ttcttcaaaa ccaatcgtat tggtctcata gatatacctt gtctggtcat acgtcagttg
     5881 actcccctct atatggtttg agttgaaagc cagctcgatt tgaatcttat ggtaaagacc
     5941 acctttgatc ctattttctt tttctcttac taacctatga cctagcatat cttacctcag
     6001 gaaagtattt caaccttcct agaatttaaa catcgtttaa actctaggaa agtaaaaata
     6061 tcttttactt tctttattct tgttttgcaa attcaatcaa cacatctttt aattcatttc
     6121 tatctttttg gagtaatcca ttgataaatg aattgacaat gtccgattgc ttatttgtaa
     6181 cgcgacccac aaatattttt tcataaatct gttcgctgac atgttcttct gttgatagta
     6241 attcctcgta gagtttctcg cctggtctga ttccagattc tacaatcccg atttcttcct
     6301 cagtatgacc actcagcaga ataacttttc ttgccaattc cagaatttgt actggctcgc
     6361 ccatatccaa gacaaagatt tctccacctt ttgccaaatg tccagcttgg ataaccaaac
     6421 gacttgcctc aggaatcgtc atgaaataac gagtcatcct aaagtcggtg acagtaacag
     6481 gaccaccttt tctaatttgc tctttgaata gtggaacaac acttccacga ctacctagaa
     6541 cattcccaaa acggactgca gcaaattgag tctgacctgg ctcgtttaaa cctgttacaa
     6601 tcatttctgc aacacgttta gtcgctccca taacatttgg tggattaaca gctttatctg
     6661 ttgaaaccat aacaaatttg gcaacctttg cagttttagc cgcctcagcc acattcttcg
     6721 ttccaaaaat attattcttc actgcttcat gtggattgta ttccatcaaa ggaacatgct
     6781 tatgtgctgc agcatgataa acaacatcgg gttgataatc agccattatg ctaaaaatca
     6841 attctctatc ttgaatatct gcaatgagag ggaccaactc aatcttacct tggtactttt
     6901 ccagtaactc tcgatgaatg agatagattg aattttctcc atgtccaagc aacatcaagc
     6961 gtttaggcat aaacttagca atttgacgac ataactctga accgatagag ccacctgctc
     7021 ctgtgacaag gattgttttc cctttgaaaa actgattcaa ttcatcctga tccaaaacaa
     7081 cctctggtcg accaagaagg tctactacgt caatttcctg aaaggcactg acagacatgt
     7141 tccccgccat aatgtcttca atgctcggca tattattgac ggtcactcct gtagtattac
     7201 agatttcaac aatcttctct cgctccttac catttaaaga agggatggca atcgtcactt
     7261 ggtcaacagc taattcctct accaatcgtg gaatatcatt acggtttcct aaaactttag
     7321 cggtacggat aaatgttcca agtttatttg gatcacaatc aacaataccg acaatttcaa
     7381 aattcaattt tcgatcttcg acggtattga tgaagatatt cccgccatct ccagcaccta
     7441 ctactaagat tcttagtggg ctatccttct ttcgaatgac attttttctc gtctcatgta
     7501 agactttcca aacaatcctc ggagtaatga gcattacata cgacaaaaat aaggacacta
     7561 agatgaaaca ataactaaag gtctgccata gaatcattga aatgattaaa aataatgaat
     7621 aagcggatat caaactcagt cctattttca cataactttg atatccagta tacctcgtaa
     7681 ttaacgaaaa aacctttagt ctaactgaga taatcaggta gaatattaaa acaaataaaa
     7741 ctgcaagaat aaagcgttca tctggaatgt caataataac atccaaaaac agcctgctca
     7801 aaatcatgga aactataata agacacatat ccatgcacat gagtatcaat cgtttactgt
     7861 tgcgatctaa cagtttgtca gtaacagttc ccaaatccat tttttctcca aaatctagat
     7921 taaccagctt aaattgcctg gttttttaat agcataagag gattcttttt caacaacgct
     7981 ttcgctttat ctttgctaaa ttcctctgtt attaacttat aagcctccct cataaacgga
     8041 ggtctactag ataaattatg catatcgcta gcaacacaat gtactaaatc ctgctctaaa
     8101 aaatatcgag tacgtttttt aaattctttt gcttgatcgc caattaaagc gggcttcagc
     8161 acatggttac tatttacctg agtatagcat cccttgtcaa ttaactcttc tactctccct
     8221 gcatgaaacg ctagggcatc atatcgttct atatgggcaa gtacgggagt tagcccaagt
     8281 agcgtcactt cgttcactgc ttcttgaatc tctttccagg gagtattcat actgaattcc
     8341 aaaagaatat agcgcgagcc attaagcgtt ggtactttct ttttttcaag tttgcttaag
     8401 agatctttac tataatacaa ttcagcacca tagcacaatc gtatttcagg ataaacttct
     8461 gctactgctt ctttaagttg aagaaaatta gtcatgataa ctttttctgg tgtttcaaac
     8521 agcccttttc gtctatgaga tgtcgccacg atatagcgaa caccttgacg ataagcttcg
     8581 cctatcaaac tcaggctctc ttcaattgtc tttggaccat catccacacc aaatataata
     8641 tgcgaatgaa catcaatcat actaacacct acttaatcaa agctcatatc ataaaaatca
     8701 agctttttta ccgtaattac cataatttcc ataatcacca tatttctcag ttgcaatatc
     8761 atacttgttc aagataacgc ctaaaaactg tgttcctgtt tgctccaact gttcctttac
     8821 ttttttcaca gctgaacgtt taacatgtcc tgcctctgct actaaaacca ttgcatcaca
     8881 cttctgagca ataattgcag catcaattac catccctaga ggtggacaat ctacaaccac
     8941 atagtcaaaa taccgacgaa gagtagctaa taagttctca aaattcttac tttgtagaag
     9001 ggcagttggg tttggtgata ttttaccaga ctcgataact gttaaattcg gaatatttgt
     9061 ttcacatagc cctcgagata aatcagtagt tcctgctaaa taatcagtta aaccagtaat
     9121 tttcgtaatt ggcttaaaga aacctgacat cactgagttt cgaatatcgg catcaaccag
     9181 aactgtcttg tagccagaac gagcataggc aatagcaaga ctagctgcag ttgtactctt
     9241 tccttcattt gattggacag aagttatgcc aaccacttta atatcttccc cactgagttg
     9301 aatattcgta cggatagcgt taaaatattc ttctgtctta tttacgaatt ctttcttcgt
     9361 acgtgcaatt tctaatgtcc ccatattttt ctcctatttc aatttcttcg aatctggcac
     9421 tacaccaagt aaggtcaatc ccattacctc ttcgatatcc tgaggacgtt ttacacggtc
     9481 atccaaaatt tccataacca acacaagacc tgttaccaag atactgccag ctaataaacc
     9541 aagcaagata ttgcgtttgg tattaggagt tgatggatcc tctgctggga cagcctcctc
     9601 gagtgttgta acatcgctca cttttgtaac ttcgatgatt ttgtgcgatg cgaaagtacg
     9661 gagactattt gcgatacgcg ccgcttcatt tggatccgca tcacgcacgg agatagaaac
     9721 aatacgagta tcgacaggga tagaaactga aaccttttct tttaggtttc cattcaaatt
     9781 caactctgta gctacctgca tcagtacatc ttgtgataga atgatttctt tatagtcttt
     9841 taccaaataa gacccagctt gtaaatcctg atttgtcaat cccgcaccag cttcagcatg
     9901 tcgcccgact acatagatac gagttgtcga ttcatattgc ggtgttacca aaaaactacc
     9961 ataagcaaaa gctaaccctg cacctaatag tcccatcaga aggataaaga atttctttct
    10021 ccaaatcgtt ttcagtaaga gtaaaatatc aatttcgatt gtattcattt cttgattatt
    10081 catgttttct cctatttttt taatttccat ccaatactga ctgaatcgag acctttgctt
    10141 gctccagact atcttggtta atttccatca tataaagttg cgatccaggc atcgcataag
    10201 aagataaatc tgttcgccca tttccaacta gcgcttgtga ctccactgta aactgtgtgt
    10261 cggattctaa ttgcgtattc accaagtcta taattgtttc aatacttaga tccgtttgaa
    10321 tagattcttc taaactattt aaaatagctt gataattgcg taaattctct ggtgcgctca
    10381 atttctttat aagagctgct atgacttttt cttggttttt accacggtca ttatcaccat
    10441 tagccaacga ataccgctca cgaacaaaga ttagcgcttg ctctgcatct aagtgtactg
    10501 ttcccaccgg gaaagtatgc tcaccacttg tgaactcttg ggtgttttct acatcgatac
    10561 ctccaaccac atcaatcaac tgtaggaagg atgtaaagtt gagacgaata tagttgctaa
    10621 tatcaatacc ataaagattt tccaaggtat gcacagaggc attgacacca taaataccag
    10681 catgagttaa tttgtcgtat tgattttgcc caccatctgc gatagcaacg tatgaatctc
    10741 gtggagtagt tgttaataaa atcttatgtg tagcacgatt aatagtcata atgatattga
    10801 catcggaacg cgaaacagat gaaattggac cgtaggtatc aataccacta atatagatat
    10861 taaaactgtc tccatttacc tgcttagtag ctgtttcaac agtctgagtc actttgaaac
    10921 tatatatttt tttcactttt gaagaaaagt ctggatcttc attttctaaa atattggtaa
    10981 aaactccgtt gaagaccatc gcttggctct caccatttat catagattgg taggctgtca
    11041 ggtaagatgt cgcagggcta gtcactagtt gagtagactc cattttggag atgtcttcca
    11101 gtaaagcggt gatgttatct tggtcgtatt cggctggagc aagtatacta gtaagctgac
    11161 gaacgtccgt aatctcacta tttgctggga caaggatgct catttcatat tctgaaaatg
    11221 tcgaatttga atttagtcgt gtcgaaaact taacaacttc ttgcatccca tagattccga
    11281 cagaagtgat gaccagtgaa aaaataagta aaagtgctgt aaatatgcgt gctttcttac
    11341 gccacatcaa caagccagtc aatactgcaa tccctatcaa caggattgtt ataatatagt
    11401 ttaaataccg gaaatctagg atgttatagc gatacatagt cactaagaac agacataaaa
    11461 taacggcata gagtccccaa agtacaaaat ttaccaactt gagcttaggc gatttcctcc
    11521 acctgcttct cttcttcata aacaaccttc cttttactta taacttactt attgtatcac
    11581 aaataacaat cttttactag cgacatagct atatttagtg atgaaaaacg ttacctgaaa
    11641 acctgaaaaa cattatcttg ttcttttttc ataatttaac tgaacgtatg aaagtcagct
    11701 gattctctgt tgatttttca gtacaatatt caaagccatc caccttaaaa ccttgaatgt
    11761 ccgataattt ctgaatattg ttcttagcca accaggacag caatcttcct ctaccttttt
    11821 ttgatatagt cgagtgaact tttagctgac ctgctttttc ttccacgaaa agaattttaa
    11881 ctaatctttt ctgaatctgt ggagaaaaca cctgctcaaa ttctgacgaa gccagtgaga
    11941 aaatcagttc atcatcacca acttcttggt cataatacgg tcgccagtac tgtttcaaag
    12001 actgattgcc tatctttaag ctcccttgaa aatctaagcg gtgaggtgaa atgaactcaa
    12061 aaggatgaat caatccgtat aaggctgtcg ctacacgaac atggtcacgt aggtaatttt
    12121 cttctttcga atctatacct cgcctatcca tataacgata catgagacca tcatataact
    12181 gccaggctgg ataggttttt gcttgacctg tcctgattcg atgccaacga tcagcttcta
    12241 actcagcctt tgattcattc aatttataaa aggcagccag cttttttaca tcaaattgac
    12301 ttatggcatc cagtaccggc ttacttcgat caggcagggg ataaaacgag gcattctcta
    12361 aatttgtatt tacttctttt gcattaggta taattatttt catcacttaa ttataccata
    12421 tagtagctta attcctgaac ctcaacccca tccagatatt gtctttcttc aatttttcct
    12481 atatactagc tagtaacata gtctataaaa agggggccta gatgaaaaaa tatcaagtta
    12541 ttatccaaga tattttgact ggaatagagg aacaccgatt caaacgtgga gagaaattac
    12601 cttctatccg tcaactcagt gagcaatatc attgtagcaa agacactgtc caaaaggcta
    12661 tgttggaatt aaagtaccaa aataagatct acgctgtcga aaaaagcggt tattatatct
    12721 tagaagatag agatttccaa gaccatactg tagagctcaa tcctgcagac tttcaagaat
    12781 taccctatga agattttcgg atttgtctaa acgaaagtct tattgggcgg gaaaattacc
    12841 tattcaacta ctatcaccag caagagggat tagcagaatt gatttcctcc gttcaaagtc
    12901 tgttaatgga ctatcatgtc tatacaaaaa aagaccagct ggttatcaca gctggtagtc
    12961 aacaagctct atatattctc acacaaatgg aaacctgggc tggaaaaacg gaaatcttga
    13021 tagagaaccc tacctattca cgaatgatag agctcattcg acatcaagga atcccttatc
    13081 aaacaattga acgggattta gatggaattg acctagaaga attggaaagt atcttccaaa
    13141 ctggaaaaat caagtttttc tacacaattc ctcgcttgca caaccctctc ggttcaacct
    13201 atgatatagc aacaaaaaca gccatcgtaa aattagcaaa gcaatacgat gtctacatca
    13261 ttgaggatga ctatttagca gatttcgatt ctagtcatag cctaccttta cactatcttg
    13321 atacagataa tcgtgtcatc tacataaaat cttttacacc gacactcttt cctgccctcc
    13381 gaatcggtgc aatcagcctt cctaatcagc tacgtgattc cttcatcaaa cataagagtc
    13441 taatcgacta cgataccaat cttatcatgc aaaaagctct ctcgctctac attgataacg
    13501 gtatgtttgc acggaacaca cagcatcttc atcatattta tcacgctcag tggaataaaa
    13561 taaaagattg tttagagaaa tacgctttga acatcccgta tcgaatttcc aaagggagcg
    13621 tgacctttca gctaagcaag gggattcttt ctcctagcat ccaacacatg tttgaaaagt
    13681 gttattattt cagcggacag aaagctgatt tcttacagat cttctttgaa caagattttg
    13741 cagataaact ggagcaattc gtaagatatt tgaatgaatg aaatccaata gtctcataca
    13801 aataatcccc ctcgaactta agagacgagg gggattattc tatatagtgg aaactacatt
    13861 ccaaaatt
//
LOCUS       DASFRC010000047        13857 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.047, whole genome shotgun sequence.
ACCESSION   DASFRC010000047 DASFRC010000000
VERSION     DASFRC010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 13857)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13857)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13857
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.047"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            114..668
                     /locus_tag="U1087_000991"
     CDS             114..668
                     /locus_tag="U1087_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009911037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEM4755486.1"
                     /translation="MNITLKKNLKTTIAGLVAGISLLTAGVVSAETYTVKSGDTLSEI
                     AETYNTTVEKLAEQNKITNLDFIHVGQVIELGDVTVKAVESSVEQTQSTSTSTATVTT
                     STYSSNLSAEDAAAKEWIAMKESSGSYDARNGIYIGRYQLTNTYLNGDYSPENQERVA
                     DAYVASRYGSWSAAKAFWLENGWY"
     gene            complement(1124..1996)
                     /gene="sdaAA"
                     /locus_tag="U1087_000992"
     CDS             complement(1124..1996)
                     /gene="sdaAA"
                     /locus_tag="U1087_000992"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase, iron-sulfur-dependent,
                     subunit alpha"
                     /protein_id="HEM4755487.1"
                     /translation="MFYTIEELVQQADNFSGNVAELMIATEIELTGRSREEILTIMSR
                     NLTVMKASIVDGLTESKSVSGLTGGDAAKLDAYMKSGKTLSDSSILSAARNAMAVNEL
                     NAKMGLVCATPTAGSAGCLPAVLGVAIDKLNLTEEQQLDFLFTAGAFGLVIANNASIS
                     GAEGGCQAEVGSASAMSAAALTLAAGGSPYQASQAICFVIKNMLGLICDPVAGLVEVP
                     CVKRNAMGASYAMVAADMALAGIESKIPVDEVINAMYQVGSALPTAFRETAEGGLAAT
                     PTGRRLAQEIFGED"
     gene            complement(2009..2680)
                     /gene="sdaAB"
                     /locus_tag="U1087_000993"
     CDS             complement(2009..2680)
                     /gene="sdaAB"
                     /locus_tag="U1087_000993"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase, iron-sulfur-dependent
                     subunit beta"
                     /protein_id="HEM4755488.1"
                     /translation="MTNLKFQSVFDIIGPVMIGPSSSHTAGAVRIGKIVSSIFGDEPT
                     EVEFQLYNSFAKTYRGHGTDVALVAGILGMDTDDPRIPDSLDIARERGIKVYWRVNKD
                     SNTPHPNTTRIIIKNDKKSISATGVSIGGGNIQVTELNGFSVNLNMNTPTIIIVHQDV
                     PGMIAKVTDVLSKYDINIAQMNVTREKAGEKAIMIIEVDARQCENSIAEIEKIPHLHN
                     VTFFN"
     gene            2895..4019
                     /gene="mnmA"
                     /locus_tag="U1087_000994"
     CDS             2895..4019
                     /gene="mnmA"
                     /locus_tag="U1087_000994"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006153390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HEM4755489.1"
                     /translation="MSIDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD
                     TDENGFCTATEDYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRSGRTPNPDV
                     MCNKEIKFKAFLDYAMNLGADYVATGHYAQVSRDEDGTVHMLRGADNGKDQTYFLSQL
                     SQEQLQKTMFPLGNLQKPQVREIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLPA
                     QPGRMMTVDGRDMGEHTGLMYYTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVG
                     QGFYHESLMSTSLQASQVHFTRDMPEEFVLECTAKFRYRQPDSQVTVKVKGDKAEVIF
                     AEPQRAITPGQAVVFYDGQECLGGGMIDMAYKDGEACQYI"
     gene            complement(4062..4451)
                     /locus_tag="U1087_000995"
     CDS             complement(4062..4451)
                     /locus_tag="U1087_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000106206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEM4755490.1"
                     /translation="MSTNLEIFNAYNNALIAGDFAALFETMADDIIWHQPGNHSTSGA
                     KIGKEVLGAHLATFAEKTNGTFKVVTNWVSDNDTLVAANVTFLGTRTDGEELNMNGID
                     LFRMEDGKIKEVWLFSADQKAEDAFWG"
     gene            4577..4903
                     /locus_tag="U1087_000996"
     CDS             4577..4903
                     /locus_tag="U1087_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM4755491.1"
                     /translation="MKKVSEYGICPFATTQKVLTGKWGLVIIYQLSTGKKRFNELQRL
                     IPGITQTMLTRHLRQLEEDRIISRTVYAEVPPRVEYSLTEMGEKFRSVLDAVEAWGLE
                     YIETLT"
     gene            5045..5493
                     /locus_tag="U1087_000997"
                     /pseudo
     CDS             5045..5493
                     /locus_tag="U1087_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647566.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
     gene            5490..7406
                     /gene="mnmG"
                     /locus_tag="U1087_000998"
     CDS             5490..7406
                     /gene="mnmG"
                     /locus_tag="U1087_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011999579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HEM4755492.1"
                     /translation="MTHTFAENYDVIVIGAGHAGVEAGLAASRMGCKTLLATINLDMV
                     AFMPCNPSIGGSAKGIVVREIDALGGEMGRNIDKTYIQMKMLNMGKGPAVRALRAQAD
                     KAEYAAEMKRTVERQENLTLRQTMIDEILVEDGKVIGVRTATNQKFSAKAVVVTTGTA
                     LRGEIIIGDLKYSSGPNNSLASITLADNLKELGLEIGRFKTGTPPRVNARTINYDETE
                     IQPGDEKPNHFSFLSRDEDYLQDQIPCWLTYTNATSHEIINSNLHRAPMFSGIVKGIG
                     PRYCPSIEDKIVRFADKERHQLFLEPEGRNTDEIYVQGLSTSLPEDVQKDLIHSIKGL
                     ENAQMMRTGYAIEYDMVMPHQLRATLETKKISGLFTAGQTNGTSGYEEAAGQGIIAGI
                     NAALKVQGKPELILKRSDGYIGVMIDDLVTKGTVEPYRLLTSRAEYRLILRHDNADMR
                     LTEIGRQVGLVDDERWQVFQIHKKQFDNEMKRLESIKLKPIKETNEKVVAMGFKPLTD
                     ALTAKEFMRRPDVTYADVVAFVGPAAEELDAKTIELIETEVKYEGYIAKALEQVEKMK
                     RMEEKRIPADIDWDDIDSIATEARQKFKLISPETIGQASRISGVNPADISILMVYLEG
                     RSRSISKNKSKDSH"
     gene            7513..9474
                     /locus_tag="U1087_000999"
     CDS             7513..9474
                     /locus_tag="U1087_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HEM4755493.1"
                     /translation="MKRFRFSTIHFVMIGVILFGLVALVHRFFPIGASTVFALLISLL
                     VLIALFIYQKHSYEFSELEQIEYLNNQANSGLMMLLDKMPVGVIKVRPDSNQVEWFNP
                     FAELIFAQENGEFDQKKLREIIDVGLDEERIYANFSGKRYAVNVDFDQGLFYFFDAST
                     EYSATNSLIGSRPVIGIISVDNYDELEDAVTDSQISQVNSFLAQFVSEFCHDYGIYYR
                     RGTMDRFYFFTDYAVLEKLIENKFSVIDKFREEAKKLDLGLTLSMGLAYGNENHHQIG
                     QVALQNLNMAEVRGGDQVVVKENDESKQPLFFGGGSASSVKRTRTRTRAMMTAVSDKL
                     KSVDAVFVVGHRNLDMDALGSAVGMQYFAQNIMNNAYTVYNPDEMAPDIARAIKKLSD
                     ENCSNLLTVEEAMKMVTFQSLLIMVDHSKIGLTLDKDFYDQFTQVVVVDHHRRDTDFP
                     NNAVLTYIESGASSASELVTELIQFQNDKHHKLNRIQSSLLMAGIMLDTKNFTSRVTS
                     RTFDVASYLRTRGSDSLEIQQIAATDFEEYRQINELILSGQRIEANVVIACADDTKEY
                     DNIIPSKAANTILDMAGIEAVFVVTRNTKGYVSISARSHSKINVQRIMEEMGGGGHFN
                     LAAAQVYDQTIAEVCEKLTDKIREEINGN"
     gene            9485..9937
                     /gene="rplI"
                     /locus_tag="U1087_001000"
     CDS             9485..9937
                     /gene="rplI"
                     /locus_tag="U1087_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HEM4755494.1"
                     /translation="MKVIFLADVKGQGKKGEIKEVPTGYAQNFLIKKNLAKEATNQAI
                     SALRGQEKSKEKAHAEMIAEAEAIKAKLAEEATLVKFVEKVGPDGRTFGSITSKKIAE
                     ELDKQFGIKIDKRHIQLDHPIRAIGLIDVPVKIYQDVIGIINLSIKEA"
     gene            9969..11324
                     /gene="dnaB"
                     /locus_tag="U1087_001001"
     CDS             9969..11324
                     /gene="dnaB"
                     /locus_tag="U1087_001001"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HEM4755495.1"
                     /translation="MAELDELRVQPQDILAEQSVLGAIFLDEGKLVFVREYIEAEDFF
                     KHAHKLIFKAMIALSDRNEAIDATTMRNYLVNHGDLENIGGLAYLAEIISSVPTAANA
                     EFYAKIVAEKSNLRKLIARLTDAVNQAYEGADGSDDIIANAEKALIDVSEGASRSGFK
                     RIDDVLNINFDNLETRAKQTSDITGIATGYPALDAMTTGLHEEELIILAARPAVGKTA
                     FALNIAQNIGTKLGLTVAIFSLEMGAESLVDRMLASEGVINSRAIRTGHLTQEEWNKY
                     MVAQANLARASIYIDDTPGIKITEIRSRSRKLAQETGNLGLILIDYLQLITGTGRENR
                     QQEVSEISRQLKILAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIV
                     AFLYRDDYYERGEQEDGGIPNNTVEVIIEKNRSGARGTVELMFQKEYNKFASISKRED
                     G"
     gene            11328..11579
                     /locus_tag="U1087_001002"
     CDS             11328..11579
                     /locus_tag="U1087_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001278154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755496.1"
                     /translation="MSDAFTDVAKMKQIKQDIKDHEGQIVELTLENGRKREKNKQGRI
                     VEVYQSLFIVEFEDPNNTFVESYTYSDILTEKILIHYLD"
     gene            11790..12401
                     /gene="rpsD"
                     /locus_tag="U1087_001003"
     CDS             11790..12401
                     /gene="rpsD"
                     /locus_tag="U1087_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014407971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HEM4755497.1"
                     /translation="MSRYTGPSWKQARRLGLSLTGTGKELARRNYVPGQHGPNNRSKL
                     SEYGLQLAEKQKLRFSYGLGEKQFRNLFVQATKIKQGTLGFNFMLLLERRLDNVVYRL
                     GLATTRRQARQFVNHGHILVDGKRVDIPSYRVEVGQVISVREKSIKVPAILEAVEATL
                     GRPAFVSFDAEKLEGSLTRLPERDEINPEINEALVVEFYNKML"
     gene            complement(12496..13662)
                     /locus_tag="U1087_001004"
     CDS             complement(12496..13662)
                     /locus_tag="U1087_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000704663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM4755498.1"
                     /translation="MKIIEVKKKNGATVYRASVYLGVDQVTGKKVKTKVTGRTHKEVK
                     QKAQQEKIAFQQDGFTRFQATSIASYQELAELWWESYKHTVKPNTQDNVKKLLDNHVL
                     PLFGVYKLDKLTTPLIQSIVNKLADKTNKGEPGAYLHYDKIHALNKRILQYGVTMQAI
                     SSNPARDVVLPRNTQKAKRKKVKHFENQDLKKFLDYLGELDLTKYRNLYEATLYKFLL
                     ATGCRINEVLALSWSDIDLENATISITKTLNHLGQINSPKSKASYRDIDIDQATITML
                     KAYQLRQIQEAWKLGRTETVVFSDFIHDYPSNKTLGTRLKTRFKRAGVPNIGFHGFRH
                     THASLLLNSGIPYKELQYRLGHSTLSMTMDIYSHLSKENAKKAVSFYETALKAL"
BASE COUNT         3945 a         2621 c         3262 g         4029 t
ORIGIN      
        1 agcgttttta ttgtctaatc tcaatttgtc tgtaatattt gtaacaattt cacaaagtct
       61 aagtaatagt tagagggtat gatagacaca tgacagaaag gaatgtgact attatgaaca
      121 ttacattaaa gaaaaactta aaaacaacta ttgctggttt ggtagcggga atctcccttt
      181 taactgcggg tgtagtcagt gcagaaacct atactgtaaa gtctggtgat accctgtctg
      241 aaattgctga aacatacaat actactgttg aaaaattagc agagcagaat aagattacca
      301 acttagattt tatccatgtc ggtcaagtta tcgaattggg tgatgtgaca gtgaaggcag
      361 tagagagttc agttgaacaa actcaatcaa catcaacttc taccgcaaca gtaacgacta
      421 gcacctattc ttcaaatttg agtgctgaag atgcagcagc aaaagaatgg attgcaatga
      481 aggaatcaag cggtagctat gatgcccgta acggtatcta cattggtcgt taccagttga
      541 caaatactta cttgaatggt gattactcac cagaaaacca agagcgtgta gcagatgctt
      601 atgttgctag tcgctatggt tcatggtctg cagccaaggc tttctggttg gaaaatggtt
      661 ggtactaaga taaattagaa gaggtctagc acgatgctag actttttctg tctcacgaat
      721 gtatttcaca actgcttttt cgttcagtcc aacggtactg aatagtagcc tctagcccaa
      781 aacttttgat ttccacgctg tatggacata ggtgatggaa aatatcaatt aagtcccgtc
      841 taatttttta gtaaatggat tttctgcggt acttaggagt gacatacatt tggtatgtga
      901 taaactgtaa cggttttaac catgctaaac tagtccactg gactagttta ctcctccttt
      961 atttaacttg acaaattaga ttataacagg aaaaaaatag aagctcaaag ccttgctagc
     1021 caccagcata ggtagtagtt ttcttgtttt tctctatgag aaaactagcc cgaaggcata
     1081 ataagaaaaa ggacgttagg gtcctttttg gtttacatta ttgtcaatct tctccaaaaa
     1141 tttcttgagc aaggcgacga cccgtcggtg tagctgcaag gcctccttcg gcagtttcac
     1201 ggaaggcggt tggtagggca gatcccactt ggtacatagc gttgatgact tcatcaacag
     1261 ggatttttga ttcaattcct gccagtgcca tatcagcagc taccatggcg tagctggcgc
     1321 ccattgcatt tcgtttgaca catgggactt ctaccagacc agcgacaggg tcacagatta
     1381 atcccagcat gtttttaatg acaaagcaga tagcttgact agcctggtag ggacttcctc
     1441 cagcagcaag ggttaatgcc gctgcggaca tagcagaggc agagccgact tctgcctgac
     1501 agcctccttc tgctccagag atggaggcgt tgttggcaat gactagaccg aaagccccag
     1561 ctgtaaagag gaaatcaagt tgttgctctt ctgtcaagtt taacttgtca atagcaacac
     1621 caagaacggc aggcaagcaa ccagcagagc cagcagttgg tgtggcacag accaagccca
     1681 ttttggcgtt taactcgttg acagccatag catttctagc cgcggacaag atagaagagt
     1741 ccgacagagt cttaccactt ttcatgtagg catctaactt ggcagcatcg cctcctgtta
     1801 aaccagatac ggatttgctt tcagtaagtc catctacgat ggaggctttc ataactgtca
     1861 agtttcttga cataattgtc aatatttctt cgcggctacg accggtcaac tcaatttcag
     1921 tcgcgatcat gagttcagct acattaccag aaaagttgtc tgcttgctga actaattctt
     1981 cgatagtata aaacatgtct ttctctttct agttgaagaa ggttacattg tgcaggtgtg
     2041 gaattttttc aatttctgca atagaatttt cacattggcg agcatccact tcgataatca
     2101 taatggcttt ttcgccagct ttttcacgtg tcacgttcat ttgggcgata ttgatgtcat
     2161 acttagaaag aacatcggtc actttcgcaa tcataccagg gacatcttgg tgaacaataa
     2221 taatagttgg cgtattcata tttagattga cagagaagcc gttgagctct gttacttgaa
     2281 tgtttccccc accgatggaa acgcctgtgg ctgagatgga ttttttatcg ttttttatga
     2341 tgattctggt ggtattggga tgtggggtat tgctgtcctt gttgacacgc cagtaaacct
     2401 taatgcctcg ttctcttgca atatcaagag agtcaggaat gcggggatca tccgtatcca
     2461 tgcccagaat acctgctacc aaggctacat ccgtaccgtg accacgatag gtcttggcaa
     2521 aggaattata gagttgaaat tccacctctg tcggctcatc gccgaagatg gaagacacaa
     2581 ttttcccaat tcggaccgcc ccagctgtgt gactagaaga tggaccaatc ataacaggtc
     2641 caataatatc aaagaccgac tgaaatttta agtttgtcat agtaatcctc acgtttttct
     2701 tggtactatt atatcaaatt ttccagttag agaatatgcc tagatgaatg tgttttctta
     2761 tgttaaaatt ctatcgctta ccctttttat atggtataat acaagttgtt caaaatcgtc
     2821 aatcgttttt ggataatcaa attttggaat acgaccttca aatcgttatt tctacgaaaa
     2881 gatgggagaa gattatgtca attgacaatt ctaaaacccg tgttgttgtc ggtatgagtg
     2941 gcggtgtgga ttcatcggtt acggctctct tgctcaaaga gcagggctac gatgtgattg
     3001 gcatcttcat gaaaaactgg gatgacacgg atgaaaatgg tttctgtaca gcaacagaag
     3061 attataagga tgtggctgct gttgcagacc aaatcggcat tccttattac tctgtcaact
     3121 ttgaaaaaga gtattgggat cgcgtatttg agtacttcct agcagagtat cggtcaggac
     3181 gcacacccaa tccagatgtc atgtgtaaca aggaaatcaa gttcaaggct ttcttagatt
     3241 acgctatgaa cttgggtgcg gactatgtgg cgacaggtca ctacgctcag gtatcacgcg
     3301 acgaggacgg cactgtccat atgctgcgtg gggcagacaa tggcaaggac cagacctact
     3361 tcctcagcca actctcacag gaacagctgc agaaaaccat gtttccgctc ggcaatttac
     3421 aaaagcctca ggtgagggaa atagcagagc gagcaggctt ggcgacagct aaaaagaaag
     3481 actcgacagg catctgcttt atcggtgaaa agaacttcaa agaattttta gggcagtatt
     3541 tgccagccca gcccggtcgg atgatgaccg ttgacggtcg tgatatggga gagcatacag
     3601 gcctcatgta ctataccata ggtcagcggg gcgggcttgg tatcggagga caaatcggag
     3661 gggacaatga gccttggttt gtggtcggaa aagatctgtc caaaaatatc ctctatgtcg
     3721 gacaaggctt ctatcatgag tccttgatgt caacttcttt acaagctagt caagtccact
     3781 ttacacgaga tatgcctgaa gaattcgtgc ttgaatgcac agctaagttc cgctaccgtc
     3841 aaccagacag tcaagtgact gtcaaggtaa aaggggacaa ggcagaagtt atctttgccg
     3901 agccacagcg ggccatcaca ccaggacaag ccgttgtttt ctatgacgga caagaatgtc
     3961 taggaggcgg catgattgac atggcctata aagatggaga ggcttgtcag tatatttaat
     4021 caaaaataaa agcttagcac cctcgtgcta agctatttat cttatcccca gaaagcatct
     4081 tcagcttttt ggtcggctga gaagagccaa acttccttga ttttgccatc ttccatacgg
     4141 aaaagatcga taccattcat gtttagttct tcaccatctg ttcgggtacc gaggaatgtt
     4201 acgttagcgg caacaagagt atcattatct gacacccagt ttgtcactac tttgaaagtt
     4261 ccatttgttt tttcggcgaa agttgctaga tgtgctccga gtacttcttt accaatttta
     4321 gcaccagatg ttgaatgatt tccgggttga tgccagataa tgtcatctgc catagtttca
     4381 aaaagagctg caaaatcacc agcgatgaga gcattgttat aggcattaaa aatttccaag
     4441 tttgttgaca tttgatgtcc tccaattttt ttgatatagt acaattatag tggaagtaat
     4501 caattataca agtaggtact tttgcatttg ttgatatcaa aagtgatact attgagataa
     4561 ataaaggaga atttttttga aaaaagttag tgaatatggt atttgtcctt ttgcaacaac
     4621 gcaaaaagtc ttgactggta agtggggatt ggttattatc taccaactca gtacaggaaa
     4681 gaaacgcttc aatgaattac agcgactaat tccagggatt acccaaacca tgttaacaag
     4741 gcaccttaga caattggagg aggatcgcat tattagtcgt acggtctatg cagaagttcc
     4801 ccctcgtgta gagtacagct tgaccgaaat gggcgaaaaa tttcgttcgg tgctggatgc
     4861 tgttgaggct tggggcttag aatatattga aacgttaacg taacaccaga tttgaaattc
     4921 tacaaatctt ttgatagaat aagagtaaca atcatcatga tggtcaaagc tcatggaaat
     4981 tgtaggcttt tttgtcctgc aattttcgag agttttggct attttttgcg attggggaga
     5041 gaagatggat tttagaacca gagttgacaa ccaaattttc ggtgttcgtg cctctgcatt
     5101 gattataaaa gatgggaaaa tatttctcac gaaggattct aagggtcgtt attacaccat
     5161 tgtcggagcg atagcagtca acgaaaggtt gttcgagaag tcaaagaaga attagggatt
     5221 gacagtcgtg tcaatcaact ggcttttgtt gtcgaaaatc aatttacaca tgaaggcata
     5281 gattttcaca atatcgagtt tcattttatc gtgaatccta ttggagaaat ccctgagaag
     5341 atgattgaag ataacttgaa acaagcttgt gaatggattg acgttgacaa acttgtcaac
     5401 ctagatgttg tgccagtctt tctggcagag gaattgccaa actggaatgg gcaagccaaa
     5461 cacatcatga atatgaagga gaaaacaaca tgacacacac atttgcagaa aactacgatg
     5521 tcatcgtgat cggagcgggg catgcgggtg tagaagcagg attggcagcc agccgcatgg
     5581 gctgtaagac cttgcttgca actattaact tggatatggt ggcctttatg ccttgtaatc
     5641 cctccattgg tggctctgcc aaggggattg tggtaagaga aattgatgcc ttgggtggcg
     5701 aaatgggtcg caacattgac aagacctata tccagatgaa gatgctcaat atgggcaagg
     5761 gaccggctgt tcgtgccttg cgggctcagg cagataaggc agagtacgca gcagagatga
     5821 agcggacggt ggagcgtcag gaaaatctga ccctgcgtca aaccatgatt gatgagattt
     5881 tagtggaaga cggcaaggtt atcggtgtcc gcacggctac caaccagaaa ttttcagcca
     5941 aggcagttgt ggtgacgacg ggtacagctt tgcgtggtga gattatcatc ggggacctca
     6001 aatattcgtc agggcctaac aacagcttag cttccatcac gctggcagat aatttgaaag
     6061 agctaggtct agaaatcggt cggtttaaga caggaacgcc accgcgtgtc aatgctcgta
     6121 ccattaacta cgacgaaacc gagattcaac caggagatga aaaaccaaac catttttcat
     6181 tcttgtccag ggatgaggat tacttgcagg accagattcc ttgctggctg acctatacca
     6241 atgcgaccag ccatgaaatt atcaacagca atcttcatcg ggcacctatg ttttcaggga
     6301 ttgtcaaggg gattggtcca cgttactgtc cgtctattga ggacaagatt gttcgttttg
     6361 cggataagga acgccaccag cttttcctag agccagaagg ccgtaatacc gacgaaatct
     6421 atgttcaagg gttgtcaacc agtctgccag aagatgtgca gaaggacttg attcactcca
     6481 tcaaaggttt ggaaaatgct cagatgatgc ggactggcta tgctattgag tacgatatgg
     6541 tcatgcctca ccagttgcgg gcaacactgg aaaccaagaa gatttctggg ctctttacag
     6601 caggtcaaac caacggaacg tcgggttatg aagaagcggc tggtcagggg attatcgctg
     6661 gtatcaatgc ggccctcaag gtgcagggca agcctgagct gattttgaaa cgaagcgacg
     6721 gctatatcgg ggttatgatt gatgatctgg tgaccaaggg aacggtggag ccttaccgcc
     6781 tcttgaccag tcgagcagaa taccgcttga ttttgcgtca tgacaacgcg gatatgcgtc
     6841 tgacggaaat cggtcgtcag gtgggcttgg tggatgatga acgctggcag gttttccaaa
     6901 tccacaaaaa acagtttgac aatgagatga aacgcttgga gtctatcaaa ctcaagccaa
     6961 tcaaggaaac caacgaaaag gttgttgcca tgggctttaa accactgaca gatgctctga
     7021 ctgccaaaga gtttatgcgt cgtccagatg tgacctatgc ggatgtggta gccttcgttg
     7081 gtcctgcggc agaggaattg gatgctaaaa ccattgaatt gattgaaacg gaagtcaagt
     7141 acgaggggta cattgccaaa gccttggagc aggtggagaa gatgaagcgc atggaagaaa
     7201 aacgcattcc agccgacatt gactgggatg atattgactc cattgcgacc gaggctcgcc
     7261 aaaaattcaa gctgatttca ccagaaacca ttggccaggc tagtcggatt tccggtgtca
     7321 atccagcgga tatatccatt ctcatggtct acttggaagg acggagccgt tccatttcta
     7381 aaaacaaatc aaaggacagt cactaaggct gttcttttcg ctgtatgtca gctatatgtc
     7441 aactacttta aaatcatgtg aaaagtagct tttttactga atttatggta gaatggcagg
     7501 cagaggttag tgatgaaaag atttcgattt tcgacaattc actttgtcat gataggtgtc
     7561 attttatttg ggttggtggc tcttgtccac cgattttttc caattggtgc cagtacagtt
     7621 tttgcgctac tcatcagcct attggtgttg attgcgctgt ttatttatca aaaacattct
     7681 tatgaattta gtgagctaga acagattgaa tatctcaata atcaggccaa ttctggtttg
     7741 atgatgctct tggataaaat gccagtggga gttatcaaag ttcgaccaga tagtaatcag
     7801 gtagaatggt ttaatccctt tgctgagctg atttttgctc aagaaaatgg ggagtttgat
     7861 caaaaaaaac tacgtgaaat tattgacgtt ggtctggatg aggagcgaat ttatgcaaac
     7921 ttttcaggca agagatacgc tgttaacgtt gattttgatc aagggttatt ttactttttt
     7981 gatgcgtcga cagagtattc agcgacaaat agtttgatcg gaagccgtcc tgttataggg
     8041 attatttcag ttgataacta tgatgagctt gaggatgctg taactgattc tcaaattagc
     8101 caagtcaatt ccttcttggc tcaatttgtt tcggaatttt gccatgatta cggtatctac
     8161 taccgacgcg gcacaatgga tcgattctat ttctttacag attatgctgt gttggaaaaa
     8221 ttgatagaga ataagttttc agttattgat aagttccgcg aggaggctaa aaagttagat
     8281 ttaggtttga ctttgagtat gggattggcg tatggtaatg aaaatcatca ccaaatcgga
     8341 caggttgcgc tccaaaatct caatatggct gaggttcgtg gtggagacca ggttgtggtc
     8401 aaggaaaatg atgagagtaa acagccactt ttctttggcg gtggctcggc ttcttccgtt
     8461 aaacgaacac gtacgcggac tcgtgctatg atgactgctg tatcagataa actcaaatcg
     8521 gttgatgctg tttttgtggt gggacatcgt aatttagata tggacgcgct tggatccgcg
     8581 gtcggcatgc agtactttgc tcaaaatatt atgaacaatg cctatacggt gtataatcca
     8641 gatgaaatgg caccagatat tgcacgtgcc atcaagaagt tgagtgatga aaattgttct
     8701 aatttgctaa cggttgagga agccatgaag atggtcactt tccagtcgtt gttaatcatg
     8761 gtagatcatt caaagattgg cttgactttg gataaggatt tctatgacca atttacccag
     8821 gttgtggtgg ttgatcatca tcgtcgcgat acagatttcc caaataatgc agttttgact
     8881 tatatagaga gtggtgctag ttctgcgagt gagttagtaa cggaattaat tcagttccag
     8941 aatgacaaac accataagct taatcgcatt caatctagtt tattgatggc tgggattatg
     9001 cttgatacaa aaaatttcac ctctcgtgtg actagtcgta cttttgatgt ggctagttac
     9061 ttgcggactc gtggtagcga tagcttggaa atccagcaga ttgctgcgac agattttgag
     9121 gaatatcgtc aaatcaatga actgatttta agcgggcaga gaattgaggc caatgttgtt
     9181 attgcgtgtg cagatgatac taaagaatac gataatatta ttccgagtaa ggctgccaat
     9241 acaatattgg acatggcagg aattgaggcg gtattcgttg taacaagaaa taccaaaggg
     9301 tatgtatcta tttctgcaag gagtcatagt aaaatcaatg ttcaacgcat catggaagaa
     9361 atgggtggag gtggccactt taacctagct gccgctcagg tatatgacca gacaatcgca
     9421 gaagtatgtg aaaagttgac ggataaaatc cgtgaagaaa taaatggaaa ttaggagaac
     9481 agatatgaaa gtaatctttt tagcagatgt taaaggtcaa ggtaaaaagg gtgagattaa
     9541 ggaagttcca acaggttacg cccaaaattt cttgatcaag aaaaatttgg ccaaggaagc
     9601 aacaaaccaa gcaatcagcg cccttcgtgg tcaggaaaaa tctaaggaaa aggctcatgc
     9661 agagatgatt gcagaagcag aggctatcaa ggctaagttg gctgaggaag ctactttagt
     9721 gaaatttgtc gaaaaagttg gtccagatgg ccgtaccttt ggttctatta ccagcaagaa
     9781 aattgctgaa gaattggaca agcaatttgg catcaagatt gataaacgcc atattcagct
     9841 ggatcaccca attcgtgcga ttggtctcat tgatgtacca gttaaaatct atcaagatgt
     9901 aataggcatc attaatttga gtattaagga agcttaatta tttatctagc cagtgaggag
     9961 gtgagatctt ggcagagttg gatgaattgc gggtgcaacc gcaggatatt ctagctgaac
    10021 aatcggtatt aggagctatt ttccttgatg aaggcaagct ggtcttcgtt cgtgaataca
    10081 tcgaagctga agattttttc aaacatgctc ataagctaat ttttaaagct atgattgctc
    10141 tttctgatag aaatgaggca attgatgcga ctaccatgcg taactattta gtgaaccatg
    10201 gtgatttgga aaatatcggt ggtttggcct atttggctga aatcattagt tccgtgccga
    10261 cggcagccaa tgcggaattc tatgccaaga ttgttgctga aaagtctaat ctccgtaaac
    10321 tgattgcccg tttgacggat gcagttaatc aggcttatga gggtgcggat ggttcagatg
    10381 acattattgc caatgctgaa aaagctttga ttgatgtcag tgagggagcc agtcgaagtg
    10441 gtttcaagcg gattgatgat gtcttgaata tcaactttga caaccttgaa actcgtgcta
    10501 aacagacgtc ggatattaca gggattgcaa ctggctatcc tgctcttgat gctatgacaa
    10561 cgggtctgca tgaggaagag ttgattattc ttgcggctcg tcctgcggtt ggtaagacgg
    10621 cttttgccct caatattgct caaaatatcg gtacaaaact gggtttgaca gttgccatct
    10681 tttctttgga gatgggtgca gaaagcttgg ttgaccgtat gctcgcttca gagggagtta
    10741 tcaattcgag ggctattcgt acggggcatt tgacgcagga agaatggaat aagtacatgg
    10801 tggctcaagc taacctggct cgggctagta tctatattga tgatacacca ggtatcaaga
    10861 ttacagagat tcgttcgcgt tcacggaagt tggctcagga aacgggcaat ctgggtttga
    10921 tcttgattga ctatcttcaa ttaattacgg gaacaggtcg ggaaaaccga caacaagagg
    10981 tttctgagat ttcccgtcag ttgaagattt tggccaagga attgaaagtt cctgttatcg
    11041 ccctcagtca gttgtcgcgt ggtgtggaac agcgtcagga taagcgacca gttttgtctg
    11101 atattcgtga atctggatct atcgagcagg atgcggatat cgttgccttc ctgtatcgtg
    11161 atgattatta tgagcgcggt gagcaggaag acggtggtat tcccaataat acggttgaag
    11221 ttatcatcga gaaaaaccgt tccggtgcgc gtggtaccgt ggaactgatg ttccaaaaag
    11281 aatacaataa atttgcaagt atttccaaga gggaggatgg atagagaatg agtgatgcat
    11341 ttacagatgt tgctaaaatg aagcaaatca aacaagatat taaagaccat gagggacaga
    11401 ttgtcgagtt gacccttgaa aatggtcgta agcgtgagaa gaataagcag gggcgtattg
    11461 tagaggttta tcagtctctc tttatcgttg aatttgaaga tccaaacaat acctttgtgg
    11521 aatcttatac ttactcagac attttgacag aaaagatttt gattcattat ttggattaat
    11581 cgctatataa ggctttacag agcctttttt ttgtgctata ctaatctttg tatgaaataa
    11641 cagcagggca aaatgaagct cgtcaacaga aggtcagcaa gaagagtaat cgttgctgtt
    11701 tcgatgaagg tctcctgcac gaatcaggtt tgcttaaaac gttatttcct acaaataatt
    11761 tttatatttt attttaggag gacataacta tgtcacgtta tacaggacca tcttggaaac
    11821 aagctcgtcg tcttggcttg tcattgacag gtacaggtaa agaattggca cgtcgtaact
    11881 atgtaccagg tcaacacgga ccaaacaacc gttctaaatt gtcagaatac ggtttgcaat
    11941 tggctgagaa acaaaaattg cgtttctctt acggtttggg tgaaaagcaa ttccgtaact
    12001 tgttcgtaca agctactaaa atcaaacaag gtactcttgg tttcaacttc atgcttcttt
    12061 tggagcgtcg tttggacaac gttgtttacc gccttggttt ggcaactact cgtcgtcaag
    12121 cacgtcaatt cgtaaaccac ggtcacatcc ttgttgatgg caaacgcgtt gatattcctt
    12181 cataccgcgt tgaagttggt caagttatct cagttcgtga gaagtcaatc aaagttccag
    12241 ctatccttga agctgttgaa gcaactcttg gacgtccagc ttttgtatca ttcgatgctg
    12301 aaaagcttga aggctcattg actcgcttgc cagaacgcga cgaaatcaac ccagaaatca
    12361 acgaagctct tgtcgtagaa ttctacaaca aaatgcttta attttaagaa atatcttacg
    12421 aaaagcctac aaccgtgggc tttttgcttt gtcttaaaat gttgatttct gggtttgctc
    12481 ccctttttgc tccccctaga gggcttttag tgctgtttcg taaaacgaga cggctttttt
    12541 tgcgttctct tttgagagat ggctataaat atccatggtc atggatagag tggaatgacc
    12601 taggcggtat tgtaattcct tgtaaggtat tccagagtta agcagtaaac tagcgtgggt
    12661 atggcggaaa ccatgaaaac caatgttagg aactccagca cgtttaaacc gagtttttag
    12721 acgagtaccc agagttttgt tacttgggta atcatggata aaatcagaga atacaactgt
    12781 ttcagttcgc cctaacttcc aagcctcttg aatttgtcta agctggtagg cttttaacat
    12841 ggtaatagtc gcctggtcta tatctatatc ccgatagctt gcttttgatt ttgggctatt
    12901 gatttgccct aggtggttta gtgtcttggt aatgctgatg gttgcattct ccagatcaat
    12961 atcagaccag ctaagcgcta ggacttcatt gatacggcaa ccagtagcca gcaagaactt
    13021 gtatagggtg gcttcataca gatttctgta cttggttagg tcaagctctc ccagatagtc
    13081 gagaaacttt tttaggtctt gattttcaaa atgcttgacc ttttttctct tagctttttg
    13141 agtgttacga ggtaggacga catcacgcgc agggttggaa gatattgctt gcatggtcac
    13201 accatactgt aaaatacgct tattaagcgc gtggatctta tcataatgca gataagcccc
    13261 aggctcccct ttgttggtct tgtcagccag tttgttaact atgctttgaa tgagtggcgt
    13321 agtcagctta tcgagcttat agaccccaaa gagtggcaaa acatggttat ctagtaactt
    13381 cttaacgtta tcttgtgtgt tgggtttgac agtatgcttg tagctttccc accatagttc
    13441 agccaattcc tggtagcttg ctattgacgt agcttgaaac ctggtaaagc cgtcttgttg
    13501 gaaggctatt ttttcttgtt gggctttctg cttaacctcc ttatgtgtcc tacccgttac
    13561 tttggtcttt actttcttac ccgttacctg gtcaactccc agatatacac tagcgcggta
    13621 cacagtagca ccatttttct tttttacttc aataatcttc atggttataa acctttccat
    13681 cagcaggcaa gctgttatta aaaagatttt agaatgtttt aggtttatat catgcgtagg
    13741 cttacgagaa tagccctatt ttcgtttgtt ttaagttggt agggtaaata taccagtcat
    13801 gagctaaaag agaatacagg cgattttgga gcgtttgaca gggttgtaaa aggtgag
//
LOCUS       DASFRC010000048        13828 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.048, whole genome shotgun sequence.
ACCESSION   DASFRC010000048 DASFRC010000000
VERSION     DASFRC010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 13828)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13828)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13828
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.048"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..504)
                     /locus_tag="U1087_001005"
     CDS             complement(<1..504)
                     /locus_tag="U1087_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016182753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM4755499.1"
                     /translation="MKSKLGITLRKIRKGKQISLCSIADSNLSKSQISRFERGESEIS
                     CIRLINILDKLHITLDEFIILHDNNSTKTGSFANLVQYIRKHYSTKNFDSIIELLSNS
                     SSYNLNRYEKTMVKSILYTTNKNFLPSDEELLQLTDYLFKVENWGYYEIILLGNCVRT
                     IKYNSYFL"
     gene            640..1266
                     /locus_tag="U1087_001006"
                     /pseudo
     CDS             640..1266
                     /locus_tag="U1087_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003069266.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
     gene            1256..2452
                     /locus_tag="U1087_001007"
     CDS             1256..2452
                     /locus_tag="U1087_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000353935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM4755500.1"
                     /translation="MDINKKTFYTITFGEFISNIGDRFQKIAFPILIYKEFHSSFAMG
                     GMVIIELLPQLLLGFVMGYLLDNFNKKKILLWSTFIPAVLCSLIPLFSKYSVSIFFYY
                     IIAFLLPLFSTLFQTGFSVITPALFEKKELQKYNSQFQGVRTISKLISPALAGLLMLK
                     FNINSIFFINSASFLLLFLSILISYIPNQVKKEDGNDDMKEIFTGFKENFTNIRLRVS
                     LLFTIVVNIAMLGFNATIVYYLQDQLKLSNSLVGLVYSIAGFGSLIAVTILSTYLKKK
                     DTFILMNISMMTIPLVIMASGIVENWIFFGICYSILSGLITIASVSITTIQQQESTEY
                     NIGKILSSSFVIATIFAPLGGILAAYFNWLLTPRFSFVILGLLSSLFVIFIKKYEKNL
                     KEERRK"
     gene            2449..3038
                     /locus_tag="U1087_001008"
                     /pseudo
     CDS             2449..3038
                     /locus_tag="U1087_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003069261.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            3064..3149
                     /locus_tag="U1087_001009"
     tRNA            3064..3149
                     /locus_tag="U1087_001009"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3096..3098,aa:Tyr,seq:ata)
     gene            3226..4185
                     /locus_tag="U1087_001010"
     CDS             3226..4185
                     /locus_tag="U1087_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001028644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HEM4755501.1"
                     /translation="MDIVVLYGGRSPERLISEVSSRQIAEALTTDNVIRLNLNGIYNF
                     ENKEVKHFSELYKLYQEGSLSEFEIDKSAEITDSVIEICKLADIVFLSTHGGIGENGK
                     LQALLDICNIKYTGNGYQSNAISLDKKLSKRLVSTVGIKTPYEYIEENKFVFPLVIKP
                     NDSGSSIGVQIIKTKEELQQFDLENYNIEEYINGREISIGVIGEKILQPIEIVIEGGF
                     YDYEKKYTPGVVKEICPANISEELKKRLEIYAKTVHDLMGFEVYSRSDFIIDDNGEIY
                     FIETNSIPGMTPTSLLPKEAEAEGINFSNLCKKIINLSIKKYN"
     gene            4366..4590
                     /locus_tag="U1087_001011"
     CDS             4366..4590
                     /locus_tag="U1087_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000284847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM4755502.1"
                     /translation="MYQRIRDLREDHDLTQKFVANLLSFSHTNYAKIERGEVALTADV
                     LVQLSKLYNVSTDYLLGLTDCPDRIKHKIK"
     gene            4860..5108
                     /locus_tag="U1087_001012"
     CDS             4860..5108
                     /locus_tag="U1087_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003106749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3173 family protein"
                     /protein_id="HEM4755503.1"
                     /translation="MKTVTYKNLMNIGFPEHTARNIIREAKRIAVKKFEEARKVDHNA
                     VQLSKSPFDNRRLGIAPKDIVEELIGISLSEDNLESEN"
     gene            5111..6310
                     /locus_tag="U1087_001013"
     CDS             5111..6310
                     /locus_tag="U1087_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003106750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM4755504.1"
                     /translation="MAIKNQKKYKGVYCDKNGKIFYQADLGVDPVTGKRVQKKARKNQ
                     YGKPFTTMKEAYDELVRIRYEFNNNLSIENYNITFESYMNTIYLRAYKQKVQAVTYKT
                     ALPHHKLFIQYFGSKPLKGITARDCESFRLHIIEHYSENYAKNLWSRFKACMGYAERL
                     GYISSMPCKSLDNPRGKHPDTPFWTYIEFQNFIKSFDLQDYEELQRFTTIWLYYMTGV
                     RVSEGLSLWWEDVDFEHKFLKVHTTLEKNENGNWYRKDQTKTPAGERLIELDDVTISV
                     LENWRKNQVANQDTDFIISRFGEPFCKSTICRIIKRKAKEVGVPVITGKGLRHSHASY
                     LINVLQKDILYVARRMGHADKSTTLNTYSHWFNALDKTVSEEITQNVISAGLDSILCQ
                     NPCQTHN"
     gene            6495..7246
                     /locus_tag="U1087_001014"
                     /pseudo
     CDS             6495..7246
                     /locus_tag="U1087_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646823.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
     gene            7442..8776
                     /gene="trmFO"
                     /locus_tag="U1087_001015"
     CDS             7442..8776
                     /gene="trmFO"
                     /locus_tag="U1087_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate--tRNA-(uracil(54)-
                     C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO"
                     /protein_id="HEM4755505.1"
                     /translation="MSQTHINVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKPTPQHK
                     TDKFAELVCSNSFRGDSLTNAVGLLKEEMRRLDSIIMRTGEAHRVPAGGAMAMDRENF
                     SQAVTDEIHNHPLIEVIRGEITEIPEDAITVIATGPLTSDALAEKIHALNGGDGFYFY
                     DAAAPIVDSSTINMDLVYLKSRYDKGEAAYLNAPMNKEQFNAFYEALISAEEAPLNSF
                     EKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPEDYKGPRDGEYKTPYAVVQLRQ
                     DNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQT
                     FATKKNPNLFFAGQMTGVEGYVESAASGLVAGINAVRRFHGEEPVIFPQTTAIGALPF
                     YITHTESKHFQPMNVNFGIIKELDGPRIRDKKERYEAIAERSLKDLEEFLTV"
     gene            8853..9688
                     /locus_tag="U1087_001016"
                     /pseudo
     CDS             8853..9688
                     /locus_tag="U1087_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636394.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
     gene            9753..10757
                     /locus_tag="U1087_001017"
     CDS             9753..10757
                     /locus_tag="U1087_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix DNA-binding domain-containing
                     protein"
                     /protein_id="HEM4755506.1"
                     /translation="MHHNTWKGIILQKQGLLNPQSVQQICQNLNGLQAQFQPYVHVGF
                     RNRMTAEDFHEGSWQEELTRQWSIRRTVHAYLESEIPLYIHEGRLVSTDYLKTEGRDG
                     FSPQTKQKYHHLILEALEQGPMTREDLKVLCREEKMTQKEEKLVFNAWGGLFRYMVER
                     GEVYQEYGAKRFHRLTDFQPLSREKAELEIARRYFSGFGPVSLADARYYFKENKSTIL
                     EWMAQLDLKTIQVAGEERFYLGVLDEADLPQCLFVAGFDQLLLGYEKKANPFFNPKYI
                     RNIYTLTGIIKPVVFYKGRFVATWKRDKGTILLDIFEDITQQEEKELDHYRQMYEKIL
                     "
     gene            10871..11698
                     /locus_tag="U1087_001018"
     CDS             10871..11698
                     /locus_tag="U1087_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM4755507.1"
                     /translation="MNKSYFYLDMRTHELDVPFTGRKRRVRVLLPKGYAENTEETYPV
                     VYFHDGQNVLYSKEAFSGHSWKVIPTIKRNPDIAKMIVVAIDNDGADRMHEYAAWKFS
                     EMGISGVQFGGKGTLYAEFVMDVVKPFIDQEYRTKSDKVHTAMIGSSLGGNITQFMGL
                     AYQNQIGCLGVFSSANWLHQDAFDRYIERQQLDSDQRVYIYVGTEEADDTDKTLMAGN
                     IKQAYINSSLSYYRQLIAGGVKLDNITLEVVSGAVHNEEVWALYLPACLRFLSEHWS"
     gene            11729..12475
                     /locus_tag="U1087_001019"
     CDS             11729..12475
                     /locus_tag="U1087_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002909732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HEM4755508.1"
                     /translation="MHVEFLSHWSGNLGREMNLNRYGHAGIPVVVFASSGGSYNEYAD
                     FGMIEACRGSIEAGHVQFFTLTSFDNESWLADWKSIHDKAEAHRAYERYVIEEAIPFI
                     KHKTGWFDGMMTTGCSMGAYHALNFFLQHPDVFIKVIALSGVYDARFFNNNQDYGNDD
                     VVYQNSPSDYIWNQNDGWFIDKYRQADIIVCTGLGDWEQDGLDSFYNLKRAFEEKNIP
                     AWFDTWGTDVAHDWVWWRKQMPFFLHSIGL"
     gene            12493..13659
                     /locus_tag="U1087_001020"
     CDS             12493..13659
                     /locus_tag="U1087_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl phosphate synthase large subunit"
                     /protein_id="HEM4755509.1"
                     /translation="MNYLVISPFYPENFQPFTIELAKKEGVTVLGIGQEPYDQLPEEL
                     RNALTEYFRVENLENLDEVKRAAAFLIYKHGPIDRVESHNEHWLENDAALREQFNIFG
                     AKPKHLKKTKFKSEMKKYFKKAGVPVVPGVVVKSERDFGRALKNVGFPMIAKPDNGVG
                     ASDTFKIENKEDFDRFVETWDGATIYFLEKFVNSSIITTYDGLLGHEGNVVFETGLTY
                     VHTPLELMLSRKDNAYFIEKELDPQLVKYGRAIITAFGMKERFFHIEFFKNGKDYIAI
                     EYNNRMAGGFTVEAYNYAHSIDLFRDYANIVTDIDVEERRFDSQYCLVATRRDTTEYV
                     HSADDIHQRFAGKIKTVKRMPDAFAELQGNDAYLLVTESKKELDEMIAYIGLTK"
BASE COUNT         4483 a         2227 c         2822 g         4296 t
ORIGIN      
        1 taggaagtag gagttatatt taattgttct tacacagtta cctaatagga taatttcata
       61 gtaaccccag ttttcaactt taaaaagata atctgttagc tgtaataact cctcgtccga
      121 ggggagaaaa tttttatttg ttgtatagag aatcgatttt accattgtct tttcataacg
      181 attcaagtta taacttgaag agtttgatag taattcaata atactatcaa aattttttgt
      241 ggagtagtgt tttcgaatat attgcaccaa gttagcgaat gatccagttt tagtagaatt
      301 attgtcatga agaataataa attcgtccaa agttatatgt aatttatcta aaatattgat
      361 tagtcgaata caagagattt ctgattctcc tcgttcaaat ctagagattt gagatttaga
      421 caaattacta tcagcaattg aacataaact gatttgcttt ccttttcgaa tttttctgag
      481 tgttatacca agttttgatt tcatatttcc cattttccca acaaaatttc aaaggttttt
      541 tatttattat acaataaata aaaaataaag ggaggttcag tatgaaaaaa cttttaaaat
      601 ttagcaaatt tacatcaata ttgttattga ttatggatat taaatataac aactccaaaa
      661 acttttaagg tagatggttt aatgagtatt gacaatatag aaaaatttat aattggtaat
      721 caaatgaaat ttccattagt agttaaacca agatttttga gtggatcaag tcatggagta
      781 aataaagtca attctttaca agaaattcaa aaagatttac cgaatctttt ggagattgat
      841 aatcatttgg ttatccaaga atatatcgaa ggaaatgatt acatagtagc tgctattttt
      901 caagatgata gagtcaatgt agggatttct agagctaaaa ttaataaaga tatcaatttt
      961 aaagaaagat atataagtgg tgaagatatg tttattgttg atgacctacc agagagaata
     1021 aattctaaaa tagaattata tactcaactt attttggatt attatgaaat agatggtact
     1081 tgttatcttg attttagagt atctggcgag gatgtatatt tcattgagtt aggaactatg
     1141 tatggtttaa gtgaaaatag tgcggtacca actcttgcaa agaagtttgg aataagtctt
     1201 accgatttaa taaaaagtga tattcatcgt ggtttaacta gaaggaaggg acattttgga
     1261 tattaataag aaaacgtttt atacaattac ttttggtgag tttatctcaa atataggaga
     1321 tagatttcaa aaaattgctt ttcctatttt aatttacaaa gaatttcatt cgtcatttgc
     1381 aatgggagga atggtaatta ttgaattgtt acctcaactc ttattagggt ttgttatggg
     1441 gtacttatta gataatttta ataagaagaa aatattacta tggtctacgt tcataccagc
     1501 agtattatgt agtttaatac cgttattttc taaatattcg gtttctatat ttttttacta
     1561 tattattgca tttttacttc ctttattttc tacacttttc caaacaggtt tttcagttat
     1621 tacccctgct ttgtttgaaa agaaagaatt gcaaaaatat aattctcagt ttcaaggtgt
     1681 tcgaactatt tcaaaattaa tttctccagc tttagcgggg ttattaatgt taaagtttaa
     1741 tattaatagt atttttttta taaatagtgc atcattcttg ttgttgtttc tttcaatatt
     1801 aatttcatat attcccaatc aagtaaagaa ggaggatggt aatgatgata tgaaagaaat
     1861 ttttacagga tttaaagaga attttacaaa tattagattg agagtttctt tactatttac
     1921 catagttgtg aatattgcta tgctaggctt taatgcaacg attgtttatt atttgcagga
     1981 ccaattaaag ttatcaaata gtcttgttgg tttagtatat tcaatcgcag gatttggaag
     2041 tttgatagca gtaaccattc tttctaccta tttgaaaaaa aaagatacct ttatattgat
     2101 gaatatatca atgatgacca taccacttgt tattatggca agtggcatag tagaaaattg
     2161 gatatttttt ggaatctgtt attcaatctt gagtggattg atcacaatag cttctgtatc
     2221 aattacaaca atacagcaac aagaaagtac tgaatacaat attggaaaaa tactgtctag
     2281 ttcatttgta attgctacca tttttgctcc cttgggaggt atattagctg cttactttaa
     2341 ttggctttta acaccacgat ttagttttgt tattttgggt ttactaagta gtttgtttgt
     2401 tatttttata aaaaaatatg aaaaaaactt aaaggaagaa agaagaaaat gagtgaacaa
     2461 tacttatcgt tattaaaaga gtttccctct gaaaccaccg aaataagaag tagtacaact
     2521 gtgattggat tgtgtaaaga tgaatataat gctattgcta aagtttattc ctctaaaaga
     2581 aattgtcaat tttctgaatt acaatccatt atagaaatat tcgaatattt agaatcatca
     2641 aattccaaaa agttataatt ttttcaggat cctataactt aaattatgaa actctaggtg
     2701 gaattactga aatttctttg aatagaggta ttgatgttgg atattttacg gggcataatt
     2761 ttaaagaggt agtaaatttt gcgattaaaa atttgaaatt tagcatgcaa aagaaatcta
     2821 gttatacttc tttaaacgta gtaccacgaa gagagtcaaa cattagagaa tttaattctc
     2881 taatgtcaat gtattcatca catcttacag tagatttact ttgtaaaaga aggtcagcat
     2941 tacttgtttt tggtggagga agactagacc agttagctgt aggaaaaaat ataatattat
     3001 gtgatagtaa aataaaaaca tcgaaagagg ttttacatat aattaattca taaataattt
     3061 atccgaggtt ggcgaaattg gtaaacgcgc ctatgataca ggtaggttcg actaaatgtc
     3121 tattggaggt tcgagtcctt caccccgcat ataagatatt tgtgaattac agtaaaactt
     3181 ttataatggg ttttactgtt ttttaatttt attgaggtaa atcaaatgga tattgtagtt
     3241 ttatatggtg gtaggagccc agaacggtta atttcggaag tttcttcaag acaaattgct
     3301 gaagcgctaa ctaccgataa tgtaattaga ctaaatttaa atggaatata taattttgaa
     3361 aataaagagg taaaacattt ttctgaatta tataagttgt accaagaagg tagcctatca
     3421 gaatttgaga tagataaatc tgctgaaata acagattcag ttattgaaat ctgtaaatta
     3481 gcagatatcg tcttcttatc tacacatggg gggattggtg agaatggaaa gttgcaggcg
     3541 ctactggata tttgtaatat aaagtatact ggtaacggat atcaaagtaa tgctataagt
     3601 ttagataaaa aattatcaaa gcgacttgtg agtacagttg ggattaaaac tccctatgag
     3661 tatattgagg aaaataaatt tgtttttcca ttagtaataa aaccgaatga cagtggttca
     3721 agtataggag ttcaaattat caaaacgaaa gaagaacttc aacagtttga cttagagaat
     3781 tacaatattg aagaatatat aaatggaaga gagatttcta tcggagttat tggtgaaaaa
     3841 attttgcaac caattgagat tgttattgag ggtggttttt atgattatga aaaaaaatat
     3901 actcctggag ttgttaagga aatttgtcct gcaaatatat ctgaagagct aaagaaaagg
     3961 ttggaaatat atgctaaaac agttcatgac ttaatgggat ttgaagtata ttcacggtca
     4021 gattttatta ttgatgataa tggtgaaatt tacttcatcg aaacgaatag tatacctggt
     4081 atgactccaa ctagtttact tcctaaggaa gccgaggcag aagggataaa ttttagtaat
     4141 ttatgcaaga aaataattaa tctcagcata aaaaaatata attaaagacg actatatatt
     4201 ctaaggatgc attctatata ctgtttgcaa gataataatg tatgaagtac cactagtata
     4261 cttacttaaa tttgaaataa tatagtacaa attttactgt catattatga caatttccca
     4321 gcttttttct gaaagtgaca tatacttttc ttaggagaaa gctagatgta ccaacggata
     4381 agagatttga gggaagatca cgatctcact caaaagtttg ttgcaaattt actttccttt
     4441 tctcatacaa attatgcaaa aattgagaga ggagaggttg ccttaacggc agatgttctt
     4501 gtgcagcttt ctaaactcta taatgttagt acagattacc tattagggtt aacagattgc
     4561 ccagatagga taaaacataa aataaaatag tctctccttg atttgttcat tgacaattga
     4621 ataaaccgag gtgggacttt cttatttgtc gagcaattta gtgagatacg ccgtgatagg
     4681 agcgaaaatt attagctata aaatagagtg gttctctatc tgccatgacc acaaataagg
     4741 acaatgatac ttctgaacgt tcaggctgcc agcgtaaaag gacagcgggt gagacgccca
     4801 tgagtgattt aaccaatcat acctactgag gaaataattt ttttgacagg agtggaggta
     4861 tgaaaacagt aacatataaa aacttgatga atattggttt tcctgaacat acggcaagaa
     4921 acatcattag agaagcaaaa agaatagcag taaaaaagtt tgaagaagct cgcaaagttg
     4981 accataatgc ggtacaatta agtaaatcgc cctttgacaa tagaagactt ggtattgctc
     5041 ctaaagatat agtagaagag ttaatcggaa tttcactctc tgaagacaat ttagaaagtg
     5101 agaattgaag atggctataa aaaatcaaaa aaagtataaa ggtgtttatt gtgataagaa
     5161 tggcaagata ttttatcagg ctgatcttgg tgttgatcca gtaacaggga aacgagttca
     5221 aaagaaagct agaaagaatc agtatggtaa gccatttact acaatgaaag aagcgtatga
     5281 tgaactggtt cgaattaggt atgagtttaa taataacctt agtattgaaa attataatat
     5341 aacatttgaa agttatatga ataccattta tctaagagct tataagcaaa aggtacaagc
     5401 tgtaacttat aaaactgctt tgccacatca taagttattt attcagtatt ttggctctaa
     5461 acctttaaaa ggcataacag ctagagattg tgaatctttt agattgcaca tcattgagca
     5521 ttattctgaa aattatgcaa agaatttatg gtcacgattt aaggcttgta tgggatatgc
     5581 tgagagatta ggatatattt catctatgcc atgcaagtcg ttagataacc ctagaggcaa
     5641 gcaccctgat actccatttt ggacttatat tgagtttcag aactttatta aatcatttga
     5701 tttacaagat tacgaagagt tacaaagatt cacaactatt tggttatatt atatgacagg
     5761 tgttcgtgta agtgaaggtt tatcgttatg gtgggaagat gtcgattttg aacataaatt
     5821 cttgaaagtt catacaacct tagagaagaa tgaaaatgga aattggtatc gtaaagacca
     5881 aaccaaaaca cctgctggag aacgcctcat tgaactggat gatgtgacaa tatcagtatt
     5941 ggaaaattgg cgaaaaaatc aagttgccaa tcaagataca gatttcatta tttcacgatt
     6001 tggtgaaccg ttttgtaaat caacgatctg tcgaattatt aagagaaaag ctaaagaagt
     6061 tggagtacca gtgataacag gaaaaggatt gcggcacagt catgcttcct atctcataaa
     6121 tgttttgcag aaggacattt tatatgtggc cagacgaatg ggacatgctg ataagtctac
     6181 aactttgaat acctacagtc actggtttaa tgcattagat aaaacagtat cagaagaaat
     6241 aacccaaaat gtaattagtg caggactaga ttccatttta tgccaaaatc cctgccaaac
     6301 tcataattaa ggctagaaag cctattatac cgcccacaga gtaacgtatg ttattgttac
     6361 tcttaaataa tagagtttcc aatcaaaata aaaacctatc acttaatgtg gtaggttttt
     6421 tcgttctatt gttgcaaacg ttttcgttgt ggggtataat ataaaaaatg atgtctaaag
     6481 attaggagaa agacatgaaa agttacaaaa actatatctt cgatttttat ggtacattgg
     6541 ttgatattcg tacagatgag aataaactag aggtctggaa tcagctaaca cagatttaca
     6601 atgcttttgg ttgttcctat cgaccgcgcc agttgaaaaa tgcctatcat cgttttgtag
     6661 aagaggcaga gagctctctc gcggaaacag tgagttatca gtatgtcgaa attgatttag
     6721 aaacaatctt cattcgtcta ttaacggatg caccaaatga aaaccaaagt accaataagc
     6781 cgactgattt agagactttt ggacaagtag tagccacgat tttccgcgtg ctttttcacg
     6841 tgaaaagtta gaggcttatg aaaataccct aactagtcta cagacattaa aggacagaga
     6901 agtgcgatta tttattctct ccaatgctca acgaattttt actcaggcag aaattgaaca
     6961 gacaggttgt gctgatttga tggaaaaaat ttatatctct tctgacttta agatgaagaa
     7021 gcctgaacca gcatttcttc aactggtttt agaggaaaat aatcttgatg ttgaggaaac
     7081 ggttatggtt ggtaatgatt tgacatccga tatagctatt gctcatgaat tgggaatgga
     7141 ttccattttg ctgaatactt tcccgtatag tcaggaagaa atcgactctt ataggagact
     7201 tggttggaat tttgaggttg ttggagatat agcggagcta ttgtaaataa gcgatagaac
     7261 agtaaaggat atacataaaa tatattatgt aaaaaggtga aactactttc atttcaatga
     7321 aggtagtttt gtcctttcta gccattttct ggtatactag ataggtataa aatttagaaa
     7381 ggttctgttt ttgggtattc ccaaacagta gtcagatatt ctggctagag gtattagttt
     7441 catgtctcaa acccacatta atgttatagg agctggcttg gctggctcag aagctgctta
     7501 tcagattgcc aaacgtggca ttcctgtcaa actctacgag atgcgtggtg tcaagccgac
     7561 tcctcagcac aagacggaca agtttgcgga gttggtttgt tccaattcat tccgtggtga
     7621 tagtttgacc aacgctgtcg gccttcttaa ggaagagatg cgtcgtttgg attccattat
     7681 catgcgtact ggagaggctc accgtgttcc tgctggaggt gccatggcca tggatcgtga
     7741 gaatttctct caagcggtta ctgatgagat tcacaatcac ccgctgattg aggtcatccg
     7801 tggtgagatt accgaaattc ctgaagatgc tattacagtc attgcgacgg ggcctttgac
     7861 gtctgacgcc ttggcggaga agattcacgc gcttaatggt ggtgacggtt tttacttcta
     7921 cgatgcggca gcaccgattg tcgacagctc gaccattaac atggacttgg tttatcttaa
     7981 gtctcgttac gacaagggag aggctgccta tctcaatgcc cctatgaaca aggagcagtt
     8041 caacgctttc tatgaggcct tgatttcagc cgaggaagca ccgcttaact cctttgaaaa
     8101 agaaaaatac tttgaaggct gtatgcccat tgaagtcatg gccaaacgtg gtatcaaaac
     8161 catgctctat ggcccaatga agccagttgg tctggaatat ccagaagatt acaagggacc
     8221 acgtgatggc gaatacaaga caccttacgc agttgtccag ctccgtcagg ataacgcagc
     8281 aggtagcctt tacaatattg ttggcttcca gactcacctt aagtggggcg agcagaagcg
     8341 ggtcttccag atgattccag gactcgaaaa tgctgagttt gtccgctacg gcgttatgca
     8401 ccgcaattcc tacatggatt cgccaaactt attggaacag acctttgcga ccaagaaaaa
     8461 tccaaatttg ttctttgcag gtcaaatgac aggagtagaa ggctatgtcg agtctgccgc
     8521 ctctggctta gtagccggta tcaatgctgt tcgccgtttc catggcgaag agccagtcat
     8581 cttcccacag accacagcca tcggagctct gccattttac atcacccaca ccgaaagcaa
     8641 gcacttccag cctatgaatg tcaactttgg tatcatcaag gagctggacg gaccgcgtat
     8701 ccgcgataag aaggagcgtt atgaggcaat agcagagcgt tccctcaagg acttggaaga
     8761 gtttttgacg gtttaagccg atagttttcc gacgaaaagt atcgggaaaa cttggatggt
     8821 agatggtaaa ctgataggga aaggggaagt tgatgataaa agagttcaat gcaaccgtac
     8881 gttacctaga gtccttttag aaagcgaaat cgatgaacgg gaatttttgc gcatatcagg
     8941 atattccgtt cccatgttta gtcgtctctt ttcgattctg acagatatgt ccttgtcaga
     9001 atacgttcgg ttacgaaagt tgacgcgagc tgctatggac attcgtgaag gacaggcaaa
     9061 gattatagat atagccctta aatatgggta tgaatcttcg gattcttttg cctttgcctt
     9121 caaacaattt catcagattt ctcctagtca agtgcgtaag gggttgcctt ttaaggtcct
     9181 cttacccttg caactatcat taaccatcca aggaggtaaa gaaatggatg ttcgtattga
     9241 aaagaaggct ggttttacag ttgctggact tcttcgcaca gcaatcagta acgaagtgtg
     9301 tccgcaggta tgggaagact tgttcaagaa ccatacttat gaagagttag ctgctctagg
     9361 aagtgggcag tcctttggag tttgtacatt agctcaagcg gacgagacga ttaattatat
     9421 ggctgcttat gatgtcacag atagtgaaaa agcgactaag ttaggcttag aacttcttga
     9481 tgttcacgaa gctgactatg ctatttttac cctaacaggc cctgttcctc aatctattca
     9541 tgcaggatgg cgttatgcgc tagaaacttt ttttcctgaa cacggctatc gccattcagg
     9601 tgcaccagat tttgagtact attttgaagg agacatgagt tccccagact accaaatgga
     9661 actctggatt cccattgtga aagcataatg tacaggacac cttcgggtgt cttttgtgtt
     9721 atactgggat tagaaagcgg aggagaaata cgatgcacca caatacttgg aagggaatta
     9781 ttctgcagaa acaaggtctg ttgaaccccc agtctgttca acaaatctgc caaaatctca
     9841 atggtttgca ggctcagttt cagccctatg ttcatgtcgg atttcgtaac cgtatgacag
     9901 cggaggattt tcatgagggt agctggcagg aggaactgac tcgtcagtgg tccattcggc
     9961 gaacggttca tgcctatctc gagtcggaaa ttcctctcta tatccatgag gggcggctgg
    10021 tcagcaccga ttacctcaag acagaaggac gggacggttt tagtcctcag accaagcaga
    10081 aatatcacca tctgatttta gaagcccttg aacaaggtcc tatgacccgt gaggatctca
    10141 aggtcctttg ccgagaggaa aagatgacac agaaagagga gaagctggtc tttaatgcct
    10201 ggggcggtct ctttcgctac atggtcgagc gtggggaagt ctaccaagag tacggtgcca
    10261 agcgttttca tcgtctgaca gactttcagc cactttctcg ggaaaaagct gagctggaaa
    10321 tagcacgtcg gtatttttca ggctttgggc cagtcagtct agcagatgct cgttattatt
    10381 tcaaagaaaa taagtcaacc attctagagt ggatggctca attagattta aaaacaattc
    10441 aagtagctgg agaggagcgg ttttaccttg gggtgcttga tgaggcagat ttacctcagt
    10501 gtcttttcgt tgcaggattt gaccaacttt tgctaggtta tgaaaagaaa gctaatccct
    10561 tttttaatcc taaatacatc cgtaatatct atactttgac gggtattatc aaacctgttg
    10621 tattttataa agggcgattt gtggcaacct ggaaacgaga taaaggtacc attttgctag
    10681 atatttttga agacatcaca caacaagaag aaaaagaatt ggatcattac cgccaaatgt
    10741 atgagaaaat tctgtgacat taactaacta tgttcggaaa atccgaaaat tgcaaataaa
    10801 taactaaatt ttctgaatat tccagaaaaa ctatgatata atacttaaaa tacgtaagga
    10861 agagatagat atgaataagt cttactttta tttggacatg agaactcatg aattagatgt
    10921 accatttaca ggaagaaaac gtcgagtccg tgttttattg ccgaaaggat atgctgaaaa
    10981 tacagaagag acctatcccg ttgtctattt ccacgatggg cagaatgtac tctacagtaa
    11041 ggaagctttt tcaggtcatt catggaaagt catcccaact attaagcgta atccagacat
    11101 tgcaaaaatg atcgtagtgg ctattgataa tgatggtgct gatcgcatgc atgaatacgc
    11161 tgcttggaag tttagtgaga tggggatttc tggcgtgcag ttcggtggta agggaacctt
    11221 gtatgccgaa tttgtgatgg atgtcgtcaa accatttatt gatcaagaat accggacaaa
    11281 atctgataaa gttcacactg caatgattgg ctcatcgttg ggaggcaata tcacccagtt
    11341 tatgggattg gcttatcaga accagattgg ctgtctaggt gtcttttcat ctgccaactg
    11401 gcttcatcaa gatgctttcg accgttatat tgaacgtcaa caattagact cagatcaacg
    11461 tgtctacatc tatgttggga cagaggaagc agatgataca gataaaacgc tgatggctgg
    11521 caatatcaaa caagcctata ttaattcgtc tttaagctat tatcgtcagt tgattgctgg
    11581 tggtgttaaa ttggacaaca taaccttaga agtcgtttcg ggagctgttc acaatgagga
    11641 ggtttgggca ctctatttgc cagcttgcct acgattccta agcgaacatt ggtcataaaa
    11701 caaaaatatt taaataggag gctttactat gcacgttgaa tttttaagtc attggtctgg
    11761 aaatcttggc cgagaaatga atctaaatcg ttatggtcac gcagggattc ctgttgttgt
    11821 ctttgcctca tctggcggtt cttataatga atatgctgat tttggtatga ttgaagcttg
    11881 ccgcgggtct atcgaagcag gtcatgtaca atttttcacc cttaccagct ttgataatga
    11941 aagttggttg gccgattgga aatccattca tgataaggca gaggctcacc gtgcctatga
    12001 acgctatgtg attgaagaag cgattccatt tatcaaacat aaaacaggct ggttcgatgg
    12061 tatgatgaca actggttgct ctatgggggc ctaccacgcg ctgaatttct tcctccagca
    12121 tccggatgtt ttcataaaag tcatcgccct ttcaggtgtc tatgatgctc gtttcttcaa
    12181 caacaatcaa gactatggca atgacgatgt tgtttatcag aactcaccat ctgactacat
    12241 ctggaaccaa aacgacggct ggtttattga taaataccgc caagcagata ttatcgtctg
    12301 cacaggtttg ggcgattggg aacaagacgg tttggactca ttctacaatc taaaacgtgc
    12361 ctttgaagag aagaatatcc cagcttggtt tgatacttgg ggaacagatg tggcccacga
    12421 ctgggtgtgg tggagaaagc aaatgccatt cttccttcat tctattggac tataagctag
    12481 aaaggactac ctatgaatta tctcgttatt tcaccttttt atccagaaaa ttttcaacca
    12541 ttcaccattg aattggctaa aaaagaaggc gttacggttc taggtatcgg gcaagaaccg
    12601 tacgaccaat tgcctgaaga acttcgtaat gccttaacag aatacttccg tgttgagaat
    12661 cttgaaaact tggatgaagt caagcgtgca gcagcctttc ttatttacaa gcatggtcca
    12721 atcgatcgag tggaatcaca caacgagcac tggttggaaa atgacgccgc actccgtgaa
    12781 caattcaaca tttttggtgc caagcctaaa cacctgaaaa agaccaaatt taagtctgaa
    12841 atgaaaaaat atttcaaaaa agcaggtgtt ccagtcgttc caggtgtggt tgttaaatcg
    12901 gaacgtgatt ttggtagagc tttgaagaat gttggttttc caatgattgc taaaccagac
    12961 aacggtgttg gagcatcaga taccttcaaa atcgaaaata aagaagattt tgatcggttt
    13021 gtggagacat gggatggagc aactatttat ttcctcgaaa aatttgtcaa ttcaagtatt
    13081 atcacaacct atgatggttt gttgggccac gaaggcaatg ttgtctttga aacaggtttg
    13141 acctatgtac acactccgct ggaactaatg ttgtctagaa aagacaatgc ctacttcatt
    13201 gagaaggagt tggatcctca attagtaaaa tatggtcgcg cgattatcac ggcctttggt
    13261 atgaaagaac gtttcttcca tattgaattt ttcaagaacg gcaaagatta catcgcgatt
    13321 gaatacaata accgtatggc aggcggtttc acagttgaag cctataacta tgcgcattct
    13381 atcgaccttt tccgtgatta cgcaaacatt gtaacagata ttgatgttga agaaagacga
    13441 ttcgattcac aatactgctt ggtcgcaact cgccgtgata cgaccgaata tgttcactca
    13501 gcagatgaca ttcatcaacg atttgctggt aagattaaaa ccgtcaaacg gatgccagat
    13561 gcctttgcgg aacttcaggg aaatgatgcc tatctacttg taacggaaag caagaaagag
    13621 ttagatgaaa tgattgccta cattggtcta acaaaataaa actaactgta agacgccaga
    13681 aatggtgtct ttttttcttt ccttacaaag ctgtaagttt tttaatcaaa actgtaagta
    13741 agtacggaaa gaatattttc tataatagac tcataagaaa tagaaagaag gaaatcacat
    13801 gtcattcaaa tttttacaag caaagaga
//
LOCUS       DASFRC010000049        13565 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.049, whole genome shotgun sequence.
ACCESSION   DASFRC010000049 DASFRC010000000
VERSION     DASFRC010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 13565)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13565)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13565
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.049"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(13..336)
                     /locus_tag="U1087_001021"
     CDS             complement(13..336)
                     /locus_tag="U1087_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755510.1"
                     /translation="MKRFLAVIFEQITVFLEHGKAPKSIEPDSKEDIKNNLELALYKK
                     AAVHVIYGDRSFTGDIVKYDTDRQRIIMKNFKRQVTSIIKIEDIKKVTLVPDSIKTSQ
                     QQTKC"
     gene            428..643
                     /locus_tag="U1087_001022"
     CDS             428..643
                     /locus_tag="U1087_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018167072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbC family protein"
                     /protein_id="HEM4755511.1"
                     /translation="MAEFTFEIEEKLLVLSENDKGWTKELNRVSFNGAPAKYDIRTWS
                     PDHTKMGKGITLSNEEFQVLLDAFANK"
     gene            complement(655..1194)
                     /locus_tag="U1087_001023"
     CDS             complement(655..1194)
                     /locus_tag="U1087_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018167073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter BioY"
                     /protein_id="HEM4755512.1"
                     /translation="MTNHSTKSLVYIAIGTAIIAALSQISLSIGPVPFTLQTLAIGLV
                     ACLYKPKEALASVALYLTLGAIGLPVFAGFSGGFAALMGPTAGFLWGFLVYAAITSVL
                     TKSTSSPVTVFLACLLGTASCFLLGCLVFKLVSGASWSDTLAWTVLPFILPDLVKIAI
                     VTLCHRLLQPITKKEAFFA"
     gene            1380..2117
                     /locus_tag="U1087_001024"
     CDS             1380..2117
                     /locus_tag="U1087_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014713635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HEM4755513.1"
                     /translation="MSELLEIYRTLKSKTWVDLTHQINENSPHFPALPALEKKALFTH
                     KDGFFVEQFTVVGQYGTHIDPPIHFVEGARYLDEIDLKDLLLPLYVIDKSYAVAADND
                     YEISKQDILDFEAEHGPIAPESFVAFRSDWSKRWPSQDAIRNLDEQGVQHTPGWSHEA
                     LEYLIEERKVKAVGHETLDTDSGVSAAKHGGSLPEEYYLLSKDIYQLEVLANLDQVPP
                     TGALISIAFPHWEKASGSPVRVIAILP"
     gene            complement(2168..3517)
                     /gene="gorA"
                     /locus_tag="U1087_001025"
     CDS             complement(2168..3517)
                     /gene="gorA"
                     /locus_tag="U1087_001025"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HEM4755514.1"
                     /translation="MKVFDIIAIGGGSGGIATMNRAAMYSAKAAVIEGSYLGGTCVNL
                     GCVPKKIMWYGSQVAEAIQHYGPEYGFTSQEVTFDFATLRKNREAYIERSRASYGNTF
                     NNNGVEVIQGFARFVDNQTVEVNGELIRAKHIVIATGAKPVVPAIPGSELGIVSDDVF
                     AWEELPSSVAVIGAGYIAVEMAGLLHGLGVQTDLFVRGNRPLRSFDTYIVDSLMEEMQ
                     RTNLPLHTGKTPISLEKTDDGQIQINFADGSNHIAQKVLWAIGRKPNIDKLNLEATSV
                     QLTSSGHISVNEYQETAVPGIYALGDVTGEKELTPVAIKAGRLLAERLFNNKPTAKMD
                     YTTIPTVVFSHPAIGTVGLTEDEAIAQYGQEQVKVYTSAFTSMYTALENNRQMAKFKL
                     VTVGENEKVVGLHGIGYGVDEMIQGFSVAIKMGATKEEFDAVVAIHPTGSEEFVTMR"
     gene            3730..4887
                     /locus_tag="U1087_001026"
     CDS             3730..4887
                     /locus_tag="U1087_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEM4755515.1"
                     /translation="MLKTKKAKIALFGGLGVVAVALVGGALIFSNMLTSPSSSEDVAM
                     SMTYTVAKEGSIASSTLLTGTITAADEQYVYYDPSKGDLSEVLVAPGAKVEVGTPLIR
                     YDATELQSALDTAVRGRDKIGRQIADLRTNGQTVQTTGDAETDAAATATAQRSVDMQL
                     ADLNDSYADAQAAVDKAYTALTEATVTSTVAGTVVEVNKAVSKNATSSQTVVHIVNQG
                     SLQVTGSLTEYDLANIAVDQEVKLTSKVYPDKTWTGKITYISNYPSSDQAGAATTGTS
                     GSGAKYPFKAALTSELGELKQGFSVNIEVVNTSKNILIPVSAVVPEEDKNYVWTLVDG
                     KAKKVEVTLGNADALNQEVTAGIAAGDKVITIPTPNLEDGKEVEANEEPAY"
     gene            4868..5563
                     /locus_tag="U1087_001027"
     CDS             4868..5563
                     /locus_tag="U1087_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4755516.1"
                     /translation="MKNQLIRLTSINKSYKNGDQELRVLKNIDLEVEEGEFLAIMGPS
                     GSGKSTLMNIIGLLDRSSSGNYWLEGEEVSQLSEKKLAQVRNDQIGFVFQQFFLLSKL
                     NALQNVELPLIYAGVPSSKRKELAKQYLEKVELAERMTHLPSELSGGQKQRVAIARAL
                     VNTPAIILADEPTGALDTKTGEQIMELLTELNNEGKTIIMVTHEPEIAAYAKRKIVLR
                     DGVITEDSRREGV"
     gene            5564..6811
                     /locus_tag="U1087_001028"
     CDS             5564..6811
                     /locus_tag="U1087_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM4755517.1"
                     /translation="MENWKFALKSIMAHKMRSLLTMLGIIIGVAAVVIIVAMGTGVAK
                     SIEKSLAGDQNNVQVYFTAFSSSGTAFGPFGTASTEEPILEEEPELTDSTLKGLLEID
                     GVSNYYSSISNIAEVRSGNKKAENVTITGVSQNFFAVKEYEILAGRQFTANDYSRFSR
                     MIMLDTTLAEKLFGSIENSLNQTISVNSNAYLVIGVYKDPKAGTAIYGMNSGGNAVMT
                     NTQLAAETGMKENSQIFVHVEDVTRATEVGQAAADYLTKATGLKEARYEIYDMSAMLE
                     EFKSQMSGVTLFIGAVAGISLLVGGIGVMNIMLVSVTERTREIGLRKALGATRGNILI
                     QFLIEAMVLTTLGGAIGLAIAQTIVFLLNVSKALGERIAAEISIPVVLGSLAFSAVVG
                     IVFGVLPANKASKLDPIEALRYE"
     gene            6937..8001
                     /locus_tag="U1087_001029"
     CDS             6937..8001
                     /locus_tag="U1087_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEM4755518.1"
                     /translation="MVELGISTFGETTPLEKTGETYSHDERIRQLVKEIELADAVGLD
                     VYGIGEHHREDFAVSAPEIVLAAGAVNTKHIKLTSAVSILSSMDPVRLYQQYTTIDAL
                     SNGRAEIMAGRGSFTESFPLFGYDLHDYEELFDEKLDMLLEIDKETNLKWDGHFTQSV
                     DNKPVYPRPVQEDFPIWVATGGNVESTIKIAKKGLPIVYAVIGAGAYHFKPLVDAYRK
                     VARNSGHDPKKTKVAAHSWGWIADDHDKAVEEYYHPSKVITDNIAKDRPHWSEMTKVQ
                     YLYSLTDEGATIVEDPKRVAEKIIKTIETLDLDRFFLHLPIGSMPHEDVLRAIELYGT
                     EVAPIVREYFAKKEENQSQG"
     gene            complement(8275..9765)
                     /gene="lysS"
                     /locus_tag="U1087_001030"
     CDS             complement(8275..9765)
                     /gene="lysS"
                     /locus_tag="U1087_001030"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003055423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HEM4755519.1"
                     /translation="MSTEHFEELNDQQIVRREKMTALAEQGIDPFGKRFERSANSAEL
                     KAQYEDKSKEDLEELGQTAIIAGRIMTKRGKGKAGFAHIQDREGQIQIYVRKDDVGEE
                     NYEIFKKADLGDFIGVEGDVFKTNVGELSLHARKLTHLSKALRPLPEKFHGLTDIETR
                     YRKRYLDLITNRESFDRFVTRSKIISEIRRYLDGLGFLEVETPVLHNEAGGAAARPFI
                     THHNAQNIDMVLRIATELHLKRLIVGGMERVYEIGRIFRNEGMDATHNPEFTSIEVYQ
                     AYADYLDIMDLTEGIIQHTAKAVVGDGPVTYQGTEIAIHEPFKRIHMVDAIKEQTGVD
                     FWQEMSFEEAKALAAEHKVPVEKHHTEVGQIINSFFEEYVEATLIQPTFVYGHPVAVS
                     PLAKKNDEDPRFTDRFELFIMTKEYGNAFTELNDPIDQLERFEAQAKAKELGDDEATG
                     VDYDYIEALEYGMPPTGGLGIGIDRLCMLLTDTTTIRDVLLFPTMK"
     gene            complement(9868..10494)
                     /locus_tag="U1087_001031"
     CDS             complement(9868..10494)
                     /locus_tag="U1087_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM4755520.1"
                     /translation="MKIYFVRHGKTEWNLEGRFQGYSGDSALLPESYQDLEKLGKYLA
                     EIPFDAIYSSDLQRAHSTAVEIAKANHHCQTVLTTQQLREWNFGTLEGSKMAIFRAIY
                     PKQAWALKHNLALFNNDLFEAESVRQVTQRMVDFVQSLKGQDMETVLIVSHGTFLTAS
                     IHRLLGFPPAQLRRRGGLDNASVTILETSDFENFTELAWNDTSYKAKQ"
     gene            complement(10497..10979)
                     /locus_tag="U1087_001032"
     CDS             complement(10497..10979)
                     /locus_tag="U1087_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA deacylase"
                     /protein_id="HEM4755521.1"
                     /translation="MAKKVKIKKTLVDQILDKAKINHDSLVLNAFEGQLPPGIEEHEI
                     YKTLALTGDKTGPIIGIVPITEHLSEKKLAKISGNKKVSMIPQKDLEKTTGYIHGANN
                     PVGIRQKHNFPIYIDQSALELGHLIVSAGEIGRSIRIDSQVLADFVKADFADLIEGRD
                     "
     gene            complement(10979..11821)
                     /locus_tag="U1087_001033"
     CDS             complement(10979..11821)
                     /locus_tag="U1087_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF368 domain-containing protein"
                     /protein_id="HEM4755522.1"
                     /translation="MASWISRIIKGMIIALGFILPGVSGGVLAAILGIYERLIGFLAN
                     IRKDFKENFLYFVPVGIGGILGIALFSFPVEFLLQHFQVPVLWAFAGAIVGTIPSLLK
                     ESTQKSKRDSIDLAWLIGTFIISGFLLYNLSDLVGTLPATFASFVLAGALIALGVLVP
                     GLSPSNLLLILGIYTPMLNGFKSLDLFGTFLPIAIGGVLAMVAFSKAMDHALKVYHSR
                     VYHFIIGIVSSSTLLILIPQASNKESISYAGANFVTWIAAIVLFILGAWLGLWMSKLE
                     EKYK"
     gene            complement(11924..12472)
                     /gene="thiT"
                     /locus_tag="U1087_001034"
     CDS             complement(11924..12472)
                     /gene="thiT"
                     /locus_tag="U1087_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupled thiamine transporter ThiT"
                     /protein_id="HEM4755523.1"
                     /translation="MSTSKLPILAEVAIFSAIALVFDKIPLFTMPQGGSISLVMLPIL
                     LLALRHGLGVGILTGGIVGTIQLFYGGYFLNVFQVFLDYALSYAGIGLAGLVAPTLSK
                     QKNLKNATLIITLASFLGGSIRLVATFLSGIIFYADYAPAGTPVWFYSFTYNISYILP
                     STAIASILLILLYRARPGFYNL"
     regulatory      complement(12531..12626)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(12650..13504)
                     /locus_tag="U1087_001035"
     CDS             complement(12650..13504)
                     /locus_tag="U1087_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 25 protein"
                     /protein_id="HEM4755524.1"
                     /translation="MRKKLNPMIVVVFFLSFFALIFITGVTGNTVNKTEVANEPAVTQ
                     SNTSTSSKTTNSSSSYYIANALEMKPIVDVSAWQRPSEIDYDTLSKNISGAIVRIQSG
                     SHTKNENTATDKNGLDKSFDTHIKEFQARNIPVAVYAYVTGNSIESMQEEARSFYKAA
                     NKYNPTFYWLDVEEYTMDDMNAGVEAFRKELETLGAKNIGIYVGTYFMEDHSINVDKF
                     DAIWIPTYGDDSGYYNAAPNTDLDYDLHQYTSRGYVNGFEHHLDLNIITTLKDPNEVY
                     QKLFTTPE"
BASE COUNT         4036 a         2630 c         3009 g         3890 t
ORIGIN      
        1 aaggctgaaa tttcagcatt ttgtttgttg ttgagaagtc ttgatgctat ctggaaccaa
       61 ggtgactttt ttgatgtcct cgatttttat aatgctggta acctgacgtt tgaaattttt
      121 catgataatc cgttggcgat cggtatcata ttttacaatg tcacctgtga aactacgatc
      181 accatagatg acatggactg cagctttttt atataaagcc agctccaagt tattcttgat
      241 atcttccttg ctatctggct caatagactt aggagctttg ccgtgttcta aaaagacggt
      301 gatctgctcg aaaataactg ctaaaaacct cttcatggca taatcctttc aaacttgata
      361 taattatatt atctaatttt tataaaaatg acaagctttt tcgaatagat aagtgaggag
      421 gtaacaaatg gcagaattta catttgaaat tgaagaaaaa ttattggtct tatctgaaaa
      481 tgataaagga tggaccaagg agcttaatcg agtatctttt aatggagcac cagcaaagta
      541 tgacatccgt acctggagtc ctgaccatac caagatgggg aaaggaatca ctcttagcaa
      601 tgaagaattc caagtcctct tggatgcctt tgctaataaa taaatgaaag aagcctaagc
      661 gaaaaaggct tcttttttgg tgataggttg caataggcgg tggcatagag taacaatggc
      721 aattttgacc aagtctggca ggataaaggg aaggacggtc caggctaagg tatctgacca
      781 gctcgctcct gaaacaagct taaagaccaa acagcctaaa aggaaacaac ttgcggttcc
      841 taatagacag gctaagaaaa cagtcacagg tgaagaagtc gacttggtga ggactgaagt
      901 aatagcggca tagactaaga agccccataa aaagcctgca gttggtccca tgagagcagc
      961 aaatccaccc gaaaatccag caaagacagg aagtccaata gctcccaaag tcaagtagag
     1021 ggctacactt gcaagggcct ctttaggctt gtacaaacaa gctactaagc caatagccaa
     1081 ggtttgcagg gtaaagggaa caggcccgat agacaggctg atttgtgaca aggcagcaat
     1141 aatagctgta ccgatagcga tataaacaag agatttcgta gaatgatttg tcattttgtt
     1201 atcctttata tttttttagg ttaacaaaat tatagacgtt ctagggatga aagtcaatgt
     1261 ttccatcatc ggctgtcaca gtgttatagt ttttatttat gggagtagat agaaaatata
     1321 tattagtaga gtttcttctt tcgtgctaga atgataacaa aaagaaagcg agaatgccta
     1381 tgtcagaatt acttgaaatt taccgcaccc ttaaatctaa aacctgggtg gacttgaccc
     1441 atcaaatcaa tgagaatagc ccccatttcc ctgctcttcc agctttggag aaaaaggcct
     1501 tgtttactca caaagacgga ttctttgttg aacaatttac ggttgtgggg caatacggta
     1561 cccatatcga tccgccgatt cactttgtag aaggggctcg ctatctggat gagattgact
     1621 tgaaagattt acttctaccg ctttatgtaa tcgataagtc gtatgctgtt gctgccgata
     1681 atgattatga gattagcaag caagatattt tggattttga agctgagcat ggtccaattg
     1741 cgccagaatc ctttgttgct tttcgttcgg attggtcaaa acgttggcca agtcaagatg
     1801 ctatccgaaa tttggatgaa caaggtgtgc aacatacacc aggttggagc catgaagccc
     1861 tagaatattt gattgaagaa cgcaaggtaa aagctgttgg tcacgaaacc ttggatacgg
     1921 attcaggagt atcggctgcc aaacatggtg gtagcctacc agaagaatac tatctcctat
     1981 caaaagatat ttatcagttg gaagtattgg caaacttgga tcaggtacca ccaacaggtg
     2041 cattgatttc aatcgctttt cctcattggg agaaggcttc gggttcacca gtgcgagtaa
     2101 ttgctatatt accataagaa aaagtccaga cagtgctgac tttcatgtct ggactttttc
     2161 aattgagtta acgcatagta acaaattctt cagaacctgt cggatggatg gcgacaacgg
     2221 catcaaattc ttcttttgta gctcccattt tgatagcaac tgagaatcct tgaatcattt
     2281 catcgacacc atagccaatg ccgtgcagtc caacgacttt ttcattttct cccacagtta
     2341 ctaatttaaa cttagccatt tggcgattat tttctagggc tgtgtacata gaagtaaagg
     2401 ctgaagtata gacttttacc tgttcttgac cgtattgagc gatagcttcg tcctcagtta
     2461 gaccaacggt tccgatagcg gggtgagaaa agacgacagt tgggatggtt gtgtaatcca
     2521 tttttgcggt tggtttattg ttaaataaac gttctgccaa aaggcgacct gccttgattg
     2581 caacgggtgt taattctttt tcaccagtta catcaccgag ggcatagatg cctggtacag
     2641 ctgtttcttg gtattcattg acagaaatat gtcctgaaga agtaagttga acactagttg
     2701 cttctaggtt gagtttgtca atatttggtt tacgtccaat tgcccaaagg accttctgag
     2761 caatatggtt actaccgtca gcaaagttaa tctggatttg tccatcatca gttttttcaa
     2821 gactgatagg agttttccca gtatggagtg gaaggttggt tcgttgcatt tcttccatca
     2881 aggaatcaac aatgtaggta tcaaagctac gaagagggcg atttccacga acaaataggt
     2941 cagtttggac accgagtcca tgtaggagac cggccatttc cacagcgata taaccagcac
     3001 caatcacagc cacagaagaa ggtaattctt cccatgcaaa gacatcgtca gatacaatcc
     3061 ctagctcact accaggaata gcagggacta ccggtttggc gccagttgcg atgacaatgt
     3121 gttttgcacg aatcagctca ccattgactt caaccgtttg attatccaca aaacgtgcga
     3181 aaccctggat aacttctact ccgttattgt taaaagtatt accgtaggat gcgcgtgaac
     3241 gctcaatata ggcttcgcga tttttacgca aggtggcaaa atcaaaggtc acttcttggc
     3301 tagtaaatcc atattcaggt ccataatgct gaatggcttc tgctacctga gagccgtacc
     3361 acataatttt tttgggtaca cagccaaggt taacacaagt ccctcctaga tagcttccct
     3421 caataactgc tgccttggca ctgtacatag cagctcggtt catggtagcg atgcctccgc
     3481 tcccacctcc gatagcgata atatcaaaca ctttcataaa tttcctccaa taaaatcatt
     3541 aactatattc attgtaacgc ttttttgtgt gtcaatcaaa aatccgctac gttaccttac
     3601 aaaaatgtaa gtgggaaaat tgccgaactt tttataaaat agttaggaaa aaacttgcat
     3661 ttgttcttgt atttgtgtat tatatagaca acacaaatag gtatgttttg taaagaaaag
     3721 gagtttgtta tgttaaagac gaagaaagca aaaattgctt tgtttggtgg tcttggggta
     3781 gtcgcagttg ccttagtagg tggggctttg atttttagca atatgctaac atcaccatca
     3841 tcttcagaag atgtagccat gagtatgacc tatactgttg ctaaagaagg ctcaattgct
     3901 tcctcaacgc tacttacagg aacgattaca gcagcagacg agcagtatgt ttactatgat
     3961 ccttctaagg gagatttgag tgaggttttg gttgctccag gtgctaaggt cgaagtaggt
     4021 acccctttga ttcgctatga tgctacagaa ttacagtctg ctttggatac tgctgttcgt
     4081 ggtcgtgata agattggtcg ccaaattgca gacttaagaa ccaacggtca gactgttcaa
     4141 acaactggtg atgcagaaac agatgctgca gcaactgcta ctgcacaacg ttcagtagat
     4201 atgcagttgg cagacttgaa tgattcgtac gcagatgctc aagctgcggt tgataaagca
     4261 tatacagcct taacagaagc gacagtaact agtaccgttg ctggtacagt tgttgaggtg
     4321 aataaggctg tttctaagaa cgctacatct agccagacag ttgtacacat tgtaaatcaa
     4381 ggtagtttgc aagtaacagg tagtttgaca gaatacgatt tggctaacat tgcagtggat
     4441 caagaggtca agttgactag caaggtatat cccgataaga cttggacggg gaaaattacc
     4501 tatatttcaa actatccatc tagtgatcaa gctggtgctg ctacaacagg aaccagtggt
     4561 tcaggtgcca aatatccatt taaggcagct ttaactagtg aattaggtga gttgaagcaa
     4621 ggattttctg taaatattga ggttgtcaat acaagtaaaa acattttaat tccggtgtcc
     4681 gcagttgtgc cagaagaaga taaaaactat gtgtggacct tggttgatgg gaaagctaag
     4741 aaagtagaag ttactctggg gaacgcagat gctttgaacc aggaagtgac cgctggtata
     4801 gcagcaggag ataaggttat taccattcca actccgaatc tcgaagatgg caaagaggtt
     4861 gaagccaatg aagaaccagc ttattagact aacaagtatc aataaatcct acaaaaatgg
     4921 tgatcaagaa ctccgagttt taaagaatat tgatttagag gtggaagagg gagaatttct
     4981 tgccattatg gggccctctg gttcagggaa atcaaccttg atgaacatta ttgggctttt
     5041 agatcgttcc agttcaggaa actattggtt ggaaggtgaa gaagtcagtc aactttctga
     5101 gaaaaaatta gctcaggttc ggaatgacca aatcggtttc gtctttcaac aatttttcct
     5161 cttatcgaaa cttaacgccc ttcaaaatgt agaattaccc ttgatttatg ctggagttcc
     5221 atcaagcaaa cgtaaggaac tagctaaaca gtatcttgaa aaagttgagt tggcagagcg
     5281 gatgacgcat ttaccatcag aattgtctgg tggtcaaaaa caacgggtgg ctattgcgcg
     5341 tgcactagtc aatactccgg ctattatttt agcggacgag ccaacaggag ccttagatac
     5401 taagacaggt gagcaaatca tggaactctt gactgagtta aataatgaag gaaagaccat
     5461 tatcatggtt acgcacgagc ctgagattgc tgcctacgca aaacgaaaaa tagttctacg
     5521 tgatggagtg atcactgaag atagtcgaag ggagggagtt tagatggaaa attggaaatt
     5581 cgccctcaaa tctattatgg ctcataaaat gagatcgctc cttactatgt taggtatcat
     5641 cattggtgtg gctgcagttg tcattattgt tgccatggga acaggggtgg ctaaaagcat
     5701 agaaaagtct ttagctggtg atcaaaataa tgttcaggtt tactttactg ccttttccag
     5761 ttcaggtaca gcttttggtc cgtttggtac agcgtcgacg gaagaaccaa ttttagagga
     5821 agagccggag ttgacggatt ctactttaaa aggactgcta gagattgatg gcgtatcaaa
     5881 ctattactcc agcatcagca acatagctga agtcagatca ggcaataaaa aagcagaaaa
     5941 tgtcactatt actggtgtta gccagaattt ctttgctgtg aaagagtatg agattttagc
     6001 tggtcgtcag tttacagcca acgactatag tcgtttttca cgtatgatta tgttagatac
     6061 gacattagca gagaagttat ttggttctat agagaactct ctcaatcaga cgattagtgt
     6121 taatagcaat gcctatctag taataggggt ctacaaagat ccgaaagcag ggacagctat
     6181 ttatggaatg aattcaggtg gaaatgccgt catgactaat acgcagctag ctgctgaaac
     6241 aggcatgaaa gaaaattctc aaatctttgt ccatgttgaa gatgttactc gggcaacaga
     6301 agttgggcag gctgctgcag attacctgac taaagcgact ggattgaaag aagcgagata
     6361 cgagatttat gatatgtcag ctatgttgga ggagtttaaa tctcaaatgt ctggcgttac
     6421 attgtttatc ggtgctgttg caggtatctc cttgctagtt ggtggtatcg gtgtcatgaa
     6481 tatcatgctg gtatcagtaa ctgagcggac tcgtgaaatc ggtcttcgaa aagcgcttgg
     6541 agcaactaga ggaaatatct tgattcaatt cttgatagaa gccatggtct tgaccactct
     6601 tggtggagcg attggtctcg caatcgctca gacaatagtt ttcttgctca atgtgagcaa
     6661 ggcgttgggc gaaagaatag ctgctgaaat atcaataccg gttgttttag gaagtttggc
     6721 tttctcagcg gtagttggta ttgtatttgg tgtactacct gctaacaaag catctaagct
     6781 tgatccaatt gaagctttgc gctatgaata atctattgaa acgattaggt tttcctagtc
     6841 gttttatttt ttgagcaaat caattgattg tatcactaat tagagataaa atagacgtat
     6901 caactaagaa atagtgattt caaaggagaa cacatcatgg tagaattagg catttcaaca
     6961 tttggcgaaa caactccact agaaaaaaca ggggaaactt acagccacga cgagcggatt
     7021 cgccagctag tcaaagaaat cgaactagct gatgcggtgg gacttgatgt ttatgggatt
     7081 ggggagcatc accgagaaga ttttgcggtt tctgcacctg agattgtgct ggcagctggt
     7141 gccgtcaata ccaagcatat caaactaaca tcagcagttt caatcctttc ctccatggac
     7201 cctgtaaggc tctatcagca gtacaccacc attgatgctt tgtcaaatgg cagagcggaa
     7261 atcatggcgg gtcgtggttc ctttacggag tcattcccct tgtttggcta tgatctccac
     7321 gactatgaag aactcttcga tgaaaagcta gatatgcttc tggaaatcga caaggaaacc
     7381 aatctcaagt gggatgggca ttttactcag tcagtcgata ataagccagt ctatccacgt
     7441 cctgttcagg aagattttcc gatctgggtt gcaactgggg gcaatgtaga gtccaccatc
     7501 aagattgcta agaaaggcct gccaatcgtg tatgctgtca ttggtgcagg tgcctatcac
     7561 tttaaacctt tagtcgatgc ttatcgcaag gttgcccgca actcaggtca cgatccgaag
     7621 aaaacgaaag ttgcagctca ttcttggggt tggattgcag acgaccacga caaggctgtg
     7681 gaagaatact atcatccaag caaagtaatt acggacaata ttgccaaaga ccgcccacat
     7741 tggagcgaga tgaccaaggt gcaatatctc tactctctga cagacgaagg agcaaccatc
     7801 gtcgaagatc caaaacgagt cgctgaaaaa attatcaaga ctattgaaac acttgacttg
     7861 gaccgtttct tcctccatct cccaatcggc tccatgccac atgaagatgt cctccgtgcc
     7921 atcgaactct acggaacaga agtcgcgcca attgtccgag aatattttgc aaagaaagaa
     7981 gagaatcagt cccaaggctg atgagatagt tgataggatg agttatacta tagttaatcc
     8041 taaatatttt tcataatctc ctgaaaatcc tgactatgtg gttgggattt ttttgcatgc
     8101 aaaaacactc ttggaatttc caagagtgtt ttaagtaacg gtgttaaaca gtttgtaatt
     8161 tttatttcat cgtcgggagt gaaaaggtct agtagacctt ttcagccaat cgctaagaaa
     8221 ctggagagcg attggtacat tctagtgaaa acaatcctag caagctactc ttacttactt
     8281 catagtcgga aataggagta catcccgaat agttgttgtg tctgttaaga gcatgcagag
     8341 gcggtcgata ccgattccaa gtccacctgt tggtggcata ccgtattcga gggcttcgat
     8401 gtagtcgtag tcaacgcctg tcgcttcgtc gtcaccgagt tctttagctt tggcttgggc
     8461 ttcgaagcgt tccaattggt cgattgggtc gttcaattct gtaaaggcat ttccgtattc
     8521 cttggtcatg atgaagagct cgaagcgatc tgtgaagcgt gggtcttcat cgtttttctt
     8581 agccagtggg gatacggcta ctgggtgacc atagacgaag gttggttgga taagagttgc
     8641 ttcaacgtat tcttcaaaga agctgttgat gatttgacca acttctgtat ggtgtttttc
     8701 cacagggacc ttgtgctcag ctgcaagggc ttttgcttcc tcgaagctca tctcttgcca
     8761 gaagtccacg ccagtttgtt ccttaatggc atcaaccatg tggatacgct tgaatggctc
     8821 gtggatagca atttcagtgc cttgataagt aacaggacca tcgccgacaa cagccttggc
     8881 agtgtgctgt ataatacctt cggtcaagtc catgatgtcc aagtaatctg cataagcttg
     8941 gtagacctcg attgacgtga actcagggtt gtgagtcgca tccataccct cgttacggaa
     9001 gatacgtccg atttcataaa cgcgttccat accaccgaca atcaagcgtt tgaggtggag
     9061 ttctgtcgcg atacgaagga ccatgtcaat gttttgggca ttgtggtggg tgatgaatgg
     9121 acgagctgca gcaccaccag cttcattgtg aaggacaggt gtttccactt ccaagaaacc
     9181 aagtccgtca aggtaacggc ggatttctga gataattttt gagcgggtca caaagcgatc
     9241 aaagctctcg cggttagtaa tcaagtccaa ataacgtttg cggtagcggg tctcgatgtc
     9301 tgtcaaaccg tggaattttt ctggcaatgg gcggagcgct ttagacaagt gagtcaactt
     9361 gcgagcatgg agagacaact caccaacgtt tgtcttgaag acatctccct cgacaccgat
     9421 aaagtcacca aggtctgctt ttttgaagat ttcatagttt tcttcgccaa catcatcctt
     9481 acgaacgtag atttgaatct ggccttcgcg gtcttgaatg tgcgcgaaac ctgccttacc
     9541 cttaccacgc ttggtcataa tacgacctgc aatgattgct gtttgtccca attcttctaa
     9601 gtcttctttc gatttatctt cgtactgggc cttcaattca gctgaattgg cagaacgctc
     9661 aaaacgtttt ccaaatgggt caatgccttg ttcagcaaga gccgtcattt tctcacgacg
     9721 gacaatctgt tggtcattta attcttcaaa atgttcagtt gacataaaaa ttttattcct
     9781 ccaaagtctg ttatttctat tttatcatag aagagagaaa aaatcagtat aaattgctaa
     9841 taggatagga aaaaacagca gaaaattcta ctgttttgct ttatagctgg tatcattcca
     9901 agctaattct gtaaagtttt cgaaatcgct tgtttctaaa atagtaaccg atgcattatc
     9961 caaaccacct cggcgacgca gttgggctgg tggaaaacca agtaggcgat ggatagaagc
    10021 ggttagaaag gtaccatggc tgacgatgag gactgtttcc atgtcttgcc ctttcagcga
    10081 ttggacaaag tccaccattc gttgagttac ttggcgaacg ctctcagctt caaataagtc
    10141 attgttaaaa agtgctagat tatgtttgag tgcccaggct tgtttgggat agatggcacg
    10201 aaaaattgcc atcttgcttc cttccagcgt tccaaaattc cattcacgta attgttgcgt
    10261 ggttagaacg gtttggcaat ggtgattggc tttggcaatt tctacggcag tgctatgtgc
    10321 gcgctgcaaa tcactagaat aaatagcatc aaaggggatt tcagcaaggt atttgcctag
    10381 tttttctaaa tcctgataag attcaggcaa gagagctgaa tctccagaat agccttgaaa
    10441 gcgtccctcc aaattccatt cggtcttacc gtgacggaca aagtagattt tcaagtctag
    10501 tccctcccct cgatcaaatc ggcaaagtca gcttttacaa aatcagctaa tacctgactg
    10561 tcaattcgaa tcgaccgacc aatttctcca gcagagacaa tcaagtgacc gagttcaagg
    10621 gcagattgat caatgtagat tgggaaatta tgcttctgac gaatgcctac gggattgttg
    10681 gcaccatgga tgtagccagt tgtcttttcc aagtcctttt gcggaatcat actcactttt
    10741 ttattgccag agatcttggc taattttttc tcagacaggt gttctgtgat tgggacaatg
    10801 ccgataattg gtccagtttt atctccagtt aatgccagtg ttttgtaaat ttcgtgttct
    10861 tcaattcctg gtggaagttg accttcgaag gcatttaaaa caaggctatc atgattgatc
    10921 ttagccttgt ccaatatttg gtccaccaag gttttcttta ttttaacctt ttttgccatt
    10981 atttatattt ttcctcaagt ttactcatcc aaagccctaa ccatgctcct agtataaata
    11041 ggacaatagc agcaatccat gtaacaaagt tcgctccagc ataggaaatt gactctttat
    11101 tacttgcttg tggaatcaaa attaggagag tagaagatga aacgatacca ataataaagt
    11161 gataaacacg tgaatggtat actttcagag cgtggtccat tgcttttgaa aatgcaacca
    11221 ttgcaagaac accaccaatt gcgattggta ggaaggtacc gaatagatca agtgacttga
    11281 aaccatttag cattggcgtg tagataccca aaatcaatag taagtttgaa gggctgagtc
    11341 cagggacaag tacccctaaa gcaatcaagg cacctgccaa tacaaaacta gcaaaagtag
    11401 ctggaagtgt cccgacaaga tcgcttaaat tgtaaagtag gaagccagaa ataatgaatg
    11461 tcccaatcaa ccaagccaaa tcaatgctat ctcgtttact cttttgagtt gattctttaa
    11521 gtaggctagg aatagttccc acgattgctc ccgcaaatgc ccacaaaact gggacttgga
    11581 aatgttgcaa taaaaattct acagggaaag agaaaagtgc gattcccaaa attccaccaa
    11641 ttcctacagg aacaaaataa agaaagtttt ccttgaaatc ttttcgaata tttgctaaaa
    11701 atccaattag tcgctcatag attccgagga tagcagcgag taccccccca gagacaccag
    11761 gtaagataaa gccgagtgcg ataatcatac ctttaataat tcttgaaatc caagaagcca
    11821 taatttcctc caaaatgtat tataacgttc ctattatagc ataaagcaag taaaaataat
    11881 taaaaagact gcctgttaga taaaatccag caggcagttt tggttaaaga ttgtaaaaac
    11941 ctggtcttgc tctatagagt aaaatgagca gaatagaggc aattgcagtg gaaggaagaa
    12001 tatagctgat attgtaggta aaggaataga accagacagg ggtaccagct ggggcatagt
    12061 ctgcgtagaa aataattcct gataagaagg tggctaccaa tcggatgctt cctcctagaa
    12121 aactagcaag agtaatgatg agagtagcat tttttagatt tttttgtttg gatagggtgg
    12181 gtgccactaa acctgctaaa ccaattccgg cgtaagaaag tgcgtagtca agaaaaactt
    12241 gaaaaacgtt taggaagtag ccaccgtaga aaagttgaat ggttcctaca ataccaccag
    12301 taagaatacc cacccctagt ccgtggcgta gcgcaagcag taagattgga agcatgacta
    12361 aggagataga tccaccttgg ggcattgtaa agagcgggat tttgtcaaag acgagggcaa
    12421 tggcagaaaa gatagcgact tcggctagga tgggtaattt tgatgtggac ataaaaagac
    12481 tcctttgtag atggtcaaca aaggagtgtt tatagcagag tatagtatca ttctataaag
    12541 cacacaattc ctacgctagt gttaactaga tcaggttcga ggatttcgca gttgcgatct
    12601 cagccgaagc actcctttgt gtatatgtaa ttggtagaat tataacattt tattcaggtg
    12661 ttgtaaatag tttctgataa acttcattag gatccttcag ggtagtaata atgttgaggt
    12721 ctaggtggtg ctcaaagccg tttacataac cacgtgaggt atattggtga agatcgtagt
    12781 ccaagtcagt atttggagcg gcattgtagt agccagaatc atcaccgtat gtaggaatcc
    12841 aaatggcgtc aaatttatcc acattgatgc tgtggtcttc catgaaatag gttccaacgt
    12901 aaattccaat gtttttagca ccgagagttt ctaactcttt tcgaaaagcc tccactccag
    12961 cattcatatc atccatggta tattcttcga cgtctaacca atagaaggtt ggattgtact
    13021 tatttgcggc cttataaaag cttcgagctt cctcctgcat gctctcaatg ctatttcccg
    13081 tgacataggc atagacagca acaggtatat ttcttgcctg gaattcttta atatgggtat
    13141 caaaggattt atctaaccca tttttatcag tcgctgtatt ttcgttttta gtgtgtgagc
    13201 cactttgaat acgaacgatt gcgccagaaa tatttttgct aagtgtatcg tagtcaattt
    13261 cagacggtct ctgccaagca gaaacgtcga cgataggttt catttcgagc gcatttgcaa
    13321 tgtaataact tgaactagaa tttgttgttt tagaacttgt actggtgttt gattgtgtga
    13381 ctgcgggttc gttagctacc tccgtcttat ttacagtatt tccagtcacc ccagtgatga
    13441 aaataagagc aaagaaggat aggaaaaaaa caacaacaat catcggattt agtttctttc
    13501 tcatctcatc aattctaccg taaaatcatg aaaaaatcaa aaaaatacga ttcaagaaat
    13561 agtaa
//
LOCUS       DASFRC010000050        13554 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.050, whole genome shotgun sequence.
ACCESSION   DASFRC010000050 DASFRC010000000
VERSION     DASFRC010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 13554)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13554)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13554
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.050"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            32..1930
                     /locus_tag="U1087_001036"
     CDS             32..1930
                     /locus_tag="U1087_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM4755525.1"
                     /translation="MIILSGNKIERSFAGEVLFNNINIQVDERDRIALVGKNGAGKST
                     LLKILVGEEAATSGEISTKRDLSLSYLAQDSRFESENTIYDEMLHVFDDLRMTEKRLR
                     SMEEQMGSLSGSELDQLMKTYDSLSEEFRLAGGFNYEADIRAILNGFKFDQTMWDMKI
                     SELSGGQNTRLALAKMLLESPELLVLDEPTNHLDIDTIAWLENYLVHYKGALIIVSHD
                     RYFLDKVATLTLDLTKHSLDRYVGNYSQFVELKEQKLQTELQNYEKQQKEIAKLEDFV
                     QKNIVRASTTKRAQARRKQLEKMERLDKPTTGQKSANMTFQSDKTSGNIVLTVENAAV
                     GYDGNILSQPISIDQRKLDTIAIVGPNGIGKTTLLKSIIGALPFIKGEAKLGANVEVG
                     YYDQTQSALTPSNTVLEELWSAFPTTPEVEIRNRLGAFLFSGDDVKKSVSMLSGGEKA
                     RLLLAKLSMENNNFLILDEPTNHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVAT
                     KVLEISETGSTLYLGDYDYYLEKKAEQEADAQPDQLESTSQSAGAMDYQAQKENQKEQ
                     RKLARRIEQIEAEIETIENHLSELNRAMLETNDIGQLTDYQKEIDQLTAQQENLMEEW
                     EELSEQMG"
     gene            2118..2594
                     /locus_tag="U1087_001037"
     CDS             2118..2594
                     /locus_tag="U1087_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3955 domain-containing protein"
                     /protein_id="HEM4755526.1"
                     /translation="MNFGQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDL
                     ELLILMSSVFSISLDQLILGGTDMNNMTEKLVKDGREGRRTQMHLTITIIGSFLMLLG
                     FVCFVIKANSVEYIDAEGILHENFYLIPVGYLLVFTGALASLLSGLALHRFRKENT"
     gene            2596..3423
                     /locus_tag="U1087_001038"
     CDS             2596..3423
                     /locus_tag="U1087_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEM4755527.1"
                     /translation="MTKHPRFSNSDQFFACPHCGQDLGLDLNSLRCPNRHTFDIAKQG
                     YVNLAPQVKQSANYHKSSFENRQAFLEAGYYDHLYAALEGKIAELGLRSVLDIGCGEG
                     FYSRKLAEKMDLDILAFDISKDSILLAAKSDRTKSVKWFVGDLTKLPIQDQTIDGILD
                     IFSPANYQEFARVLKTGGAILKLVPGPNHLKELRHLAKDQLRKESYDNQDIVDHFQSY
                     VGQVEQVLVSRTMPITVAHAQVLADMTPLFFQVDQSKLDLSQLTEITIEGLLLVGTI"
     gene            complement(3728..4516)
                     /locus_tag="U1087_001039"
     CDS             complement(3728..4516)
                     /locus_tag="U1087_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase"
                     /protein_id="HEM4755528.1"
                     /translation="MVYTSLKSPEKDYTYDLHIAHLYGDLMNTYGDNGNILMLKYVAE
                     KLGARVQVDIVSLTDEFDKDFYDIAFFGGGQDYEQSILAKDLPTKKDSLADFIENDGI
                     MLAICGGFQLLGQYYIEAGGRKIDGLGIMGHYTLNQTNNRYIGDIKIHNDEFNETYYG
                     FENHQGRTFLADNQKPLGKVVYGNGNNKEDGGEGLHYKNTFGSYFHGPILSRNANLAY
                     RLVTTALRKKYGQDIQLASYTDILSKEVAEEYGDVKSKAEFDTQ"
     gene            complement(4516..5859)
                     /locus_tag="U1087_001040"
     CDS             complement(4516..5859)
                     /locus_tag="U1087_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase family protein"
                     /protein_id="HEM4755529.1"
                     /translation="MKINTALGILAGKSSQFILKKLGRGTTLPGKIALKFDKHILDSL
                     AKDYEVVVVTGTNGKTLTTALTVGILQEAFGEITTNTSGANMITGITATFLSAKKNKN
                     GKKIAVLEIDEASLARVTDFIKPSLIVFTNIFRDQMDRYGEIYTTYQMILDGAAKAPQ
                     ATILANGDSPLFNSTNVINPVKYYGFATEEHEPRLAHYNTEGVLCPHCHQIIQYKLNT
                     YANLGSYICSNCGFSRPELDYKLTELKEITNTSSTFAIDGQDYKINIGGLYNIYNALA
                     AVSVAEFFGVAPEKIKAGFDKSKAVFGRQETFKLGDKDCTLVLIKNPVGATQAIEMMK
                     LAPYDFSLSVLLNANYADGIDTSWIWDADFEQITQMDIPQVFAGGVRSSEIARRLRVT
                     GYPENQITETPKLEDIMTLIEQSSSQHAYILATYTAMLEFRDLLAQRQAVGKEMK"
     gene            6039..6893
                     /locus_tag="U1087_001041"
     CDS             6039..6893
                     /locus_tag="U1087_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00159 family protein"
                     /protein_id="HEM4755530.1"
                     /translation="MLNLNQLLDTGYWSSLIASPWTALLHLIDISIVVYLIYNFSKSI
                     AGTKIMTLIRGVFLFIIFQIIASLFGLQTIAWLINQVITYGVIAAVVIFAPELRAMLE
                     KLGRTTQIFGTNTVSAEEKLIVAFLKSVAYMSPRKIGALVAVEQVQTLQEYRATGIPL
                     NADISQELLINIFIPNTPLHDGAVIVKEDKVAVACAYLPLSESAGISKEFGTRHRAAI
                     GLSEVSDAFVFIVSEETGSISIARNGIFKHDLTLDEFEAELRATFISENVEKKSIWKR
                     LGGGKHER"
     gene            6883..7587
                     /locus_tag="U1087_001042"
     CDS             6883..7587
                     /locus_tag="U1087_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755531.1"
                     /translation="MNDKFKAVGHLALSIFLALLLFFYATTTNYKNSETAAQNTESET
                     YVHTLSNVPIEIEYDTNKYFISGFSSTVAVELRGSNRVLLQRESDESTRTFQVTADLR
                     ELSDGTQTVKLQLTNLPAGVSATLAPDAITVKIGKKVSKAFPVAGRVYSNQFAEGYSL
                     SKVSVNVDTVKVTTDEETMAKIDQVEAVAMDVSNLSENYSGTAKLQAVDSDGNVLPVV
                     LSQTEANMQIILTKTK"
     gene            7600..8952
                     /locus_tag="U1087_001043"
     CDS             7600..8952
                     /locus_tag="U1087_001043"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007517007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEM4755532.1"
                     /translation="MGKYFGTDGVRGEANVELTPELAFKLGRFGGYVLSQHETDVPRV
                     FVARDTRISGQMLEAALIAGLLSVGIHVYKLGVLATPGVAHLVKTEKASAGVMISASH
                     NPAQDNGIKFFAGDGFKLDDALEAEIEALLDAEEDTLPRPSAQGLGDVVDYPEGLRKY
                     ESFLVSTGIQLEGMKVALDTANGAASTSARQIFADLGADLTVMAEHPDGLNINEGVGS
                     THPEKLQELVKETGSQIGLAFDGDSDRLIAVDENGDLVDGDRIMYIVGKYLSEKGLLA
                     KNTIVTTVMSNLGFHKALDREGIEKAVTAVGDRYVVEEMRKGGYNVGGEQSGHVILMD
                     YNTTGDGQLTAVQLTKIMKETGKKLSELAAEVTIYPQKLVNIRVENSMKEKAMEVPAI
                     AAIIEKMEAEMAGNGRILVRPSGTEPLLRVMAEAPTDAEVDYYVDTIADVVRAEIGLD
                     "
     gene            9002..10546
                     /locus_tag="U1087_001044"
     CDS             9002..10546
                     /locus_tag="U1087_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000025412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM4755533.1"
                     /translation="MSILEVKNLSHGFGDRAIFENVSFRLLKGEHIGLVGANGEGKST
                     FMSIVTGQLQPDEGKVEWSRYVTAGYLDQHAKLEKGQSVRDVLRTAFDELFKTEVRIN
                     DIYMSMAEEGADMDALMEEVGELQDRLESRDFYTLDAKIDEVARALGVMDYGMDKDVT
                     ELSGGQRTKVLLAKLLLEKPDILLLDEPTNYLDAEHIDWLKRYLQNYENAFVLISHDI
                     PFLNDVINIVYHVENQLLTRYTGDYYQFQEVHAMKRAQLEAAYERQQKEIADLQDFVN
                     RNKARVATRNMAMSRQKKLDKMEIIELQAEKPKPSFDFKMARTPSRFIFQTTDLEIGY
                     DRVLTRKPLNLTFERNQKIAIVGANGIGKSTLLKSLLGIIPPLGGSVERGEYLELGYF
                     EQEVAGGNRQTPLEAVWDAFPALNQAEVRAALARCGLTSKHIESQIQVLSGGEQAKVR
                     FCLLMNRENNVLVLDEPTNHLDVDAKDELKRALQAYKGSILMVCHEPDFYEGWVDDVW
                     DFNDLT"
     gene            10708..11913
                     /gene="sstT"
                     /locus_tag="U1087_001045"
     CDS             10708..11913
                     /gene="sstT"
                     /locus_tag="U1087_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003046742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HEM4755534.1"
                     /translation="MNKIISVWKKMNLIRKIGIGVVLGVLLGLIAPKITVIALFGSLF
                     VGALKAIAPLLVLTLVAHALSQAPAGQKSNMRIVICLYLFGTFAAAFIAVGASYLFPI
                     KLVLSTTTTTDITPPQGIAEVFQDLLLKVVDNPINALATANYIGVLTWAAVFGLAFRH
                     ASKTTKDLLQSAAEVTSKVVGWIIGLAPFGIMGLVFDTIANNGLTALKDYGLLLLLLV
                     GSMIFVALVVNPLITFLVMKKNPYPLVFECLRVSGVTAFFTRSSAANIPVNMQLCKRL
                     GVDPDTYSVSIPLGATINMAGAAITINILTMAAVHTLGISVDFSSALLLSVVASLSAA
                     GASGVAGGSLLLIPVACSLFGIPNELAMQVVGVGFVVGVIQDSCETALNSSTDVLFTV
                     VAERSAWKK"
     gene            12118..13518
                     /gene="pepV"
                     /locus_tag="U1087_001046"
     CDS             12118..13518
                     /gene="pepV"
                     /locus_tag="U1087_001046"
                     /EC_number="3.4.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000125034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase PepV"
                     /protein_id="HEM4755535.1"
                     /translation="MTVDFRAEFDKRKDEFLADLFDLLRINSERDDSQADAQHPFGPG
                     PVHALDKFLEIAQRDGYPTKNVDNYAGHFEFGEGEEVLGIFGHLDVVPAGSGWNTDPY
                     EPQIIDGKLFARGSSDDKGPTMACYYGLKIIKELGLPTSKKVRFIVGTDEESGWADMD
                     YYFEHVGLPLPDFGFSPDAEFPIINGEKGNITAYLHFAGENSGAAKLHSFTGGLRENM
                     VPESATAIISGDLVDLDSKLVDFTAAYGLKADAETLENGQVQVTVIGKSAHGSTPEEG
                     VNGATYLAKFLSQFAFDGSAKSYLDLAGQVLLEDYDAQKLGVAIYDEQMGALSMNAGV
                     FKFDETSSDNTIALNFRYPKNTNPETIKAGLEKLGVEAVSLSEHGHTPHYCPIDDPMV
                     ATLLSVYEKHTGLKGHEQVIGGGTFGRLLKRGVAYGAMFPGDINTMHQANEFIEVEQL
                     YRAATIYAEAIYELIK"
BASE COUNT         3739 a         2878 c         3228 g         3709 t
ORIGIN      
        1 tggttcggct aatttatggt acaatattgc tatgattatt ctaagcggaa acaagattga
       61 acgctcattt gcgggcgaag ttttatttaa caatatcaac attcaagtgg acgagcgaga
      121 tcggattgcc cttgtcggaa aaaatggggc tggcaagtca actcttctta aaatccttgt
      181 cggagaagaa gcagcgacta gcggcgagat ttctaccaag cgagatttat cgctttctta
      241 tctggcacag gatagccgtt ttgagtcgga aaatactatc tacgatgaga tgctccatgt
      301 ctttgatgac ctgcgaatga cggagaaacg cctgcggtct atggaagagc aaatgggcag
      361 tttgtctggt agtgaacttg accagctgat gaaaacctat gatagtttgt cagaggaatt
      421 tcgtctggca ggtggcttta actatgaggc ggatatccgt gctattttga atggttttaa
      481 gtttgaccaa accatgtggg atatgaaaat ttccgaactc tctggagggc aaaatacccg
      541 tttggctttg gcaaaaatgc ttcttgaaag cccagagtta ttggtgctgg acgagccgac
      601 caaccatctg gatattgaca cgattgcttg gctggaaaac tacctagtgc attacaaggg
      661 agccttgatt atcgtcagtc acgaccgcta tttcttggac aaggtagcga cactgacact
      721 ggacttgacc aagcattcct tggatcgcta tgtgggcaat tattctcagt ttgtcgagct
      781 caaagagcag aagttgcaaa cggaattgca aaattatgag aagcaacaga aggaaattgc
      841 caagttagaa gactttgttc agaaaaatat tgtccgtgct tcgaccacca agcgtgctca
      901 ggctagacgc aagcagttgg aaaagatgga gcgactggac aagccaacaa ctggtcagaa
      961 gtctgccaac atgactttcc agtcggacaa gacttctggc aatatcgtct tgacagtgga
     1021 aaatgctgcg gtgggctacg atggaaacat tctttcccag cctatttcta ttgaccaacg
     1081 caagctggat accattgcca ttgtcggtcc gaatggaatc ggaaaaacaa ccctgctcaa
     1141 atcaatcatc ggagctctgc catttatcaa aggggaagcc aagctaggtg ccaatgtgga
     1201 agtgggctac tacgaccaga cccagtctgc cctgacgcct tccaatactg tcttggagga
     1261 gctctggtca gcctttccga ccacacctga agtggaaatc cgcaaccgcc ttggagcctt
     1321 cctcttctca ggcgatgatg tcaaaaagtc cgtttccatg ctgtcgggtg gggaaaaggc
     1381 ccgcctgctc ctggccaagc tatccatgga aaacaacaac ttcctcatcc tcgacgagcc
     1441 gaccaaccac ctggacatcg acagcaagga agtgctggaa aatgccctca tcgattttga
     1501 cggcaccttg ctctttgtca gccacgaccg ctatttcatc aaccgcgtcg ccaccaaggt
     1561 cctggaaatc tcggaaactg gctccacgct ctacttgggc gactatgact attatttgga
     1621 gaaaaaggca gagcaggaag cagatgccca gcccgaccag ctagaaagta ctagccaatc
     1681 agccggagcc atggactacc aagcccaaaa ggaaaaccaa aaagagcaac gcaaactagc
     1741 ccgccgcatc gagcaaatcg aggcagaaat tgagaccatc gaaaaccatc tcagcgagct
     1801 taaccgagcc atgctagaaa ccaacgacat cggtcagcta accgattacc agaaagaaat
     1861 cgatcaattg actgcccaac aagaaaatct catggaagaa tgggaagaat tatcggagca
     1921 gatgggctag gttgacagca agttgacaag aggctcaaat ccttgataga acaagcttgc
     1981 aagccagtct tgcggagctg gcaagaccac ctttcgctaa aaaagtccag agcaagccag
     2041 cctttcttgg caaacattgg tcaacaagct aagataaaat cagaacctgc cagacaggtt
     2101 cctgaaagga gaaagaaatg aactttggac agcaaatcaa agacttacga aaaaagaaag
     2161 gtttgactca ggaacagttt gccctcaaac tcaatgtgac tcgacaggcc gtttccaact
     2221 gggaaaatga caaaaacctg cccgacttgg aactcttgat tctcatgtcc tctgtctttt
     2281 cgatctcctt agatcaactt atcttaggag gaactgacat gaacaacatg acagaaaaac
     2341 ttgtaaaaga cggtcgcgaa ggtcgccgta cccagatgca cctgaccatt accattattg
     2401 gtagttttct catgcttctc ggcttcgtct gctttgtcat caaggcaaac tcggtcgagt
     2461 atattgatgc cgagggcatt ctacatgaaa atttttatct cattccagtc ggctacttgc
     2521 tagtctttac aggagccctt gcctcgctcc tatcaggact agccctgcac cgctttagaa
     2581 aagaaaatac ttaacatgac caaacaccca cgttttagca atagtgacca atttttcgcc
     2641 tgtccacatt gtgggcagga tcttggtctt gacctcaaca gcctccgctg tcccaaccgc
     2701 cacaccttcg acatcgccaa gcagggctat gtcaatctgg cacctcaggt caagcagtcc
     2761 gccaactacc acaagtctag ctttgaaaac cgccaggcct ttttagaggc gggctattac
     2821 gaccatctct atgcggcttt ggagggaaaa atagcagagc tgggcttgcg gtctgtcttg
     2881 gatatcggct gtggagaggg gttttattcc cgcaaattag ccgagaaaat ggacttggac
     2941 attcttgctt ttgatatttc caaggattcc attctcttgg cagccaaatc tgacaggacc
     3001 aagtcggtca aatggtttgt cggtgacttg accaagttac ccattcaaga ccagaccatt
     3061 gacggtatct tggacatctt ctccccagct aattatcagg agtttgccag agtgttaaaa
     3121 actggtgggg caattctcaa gctggtccca ggtccaaatc acctcaagga gctccgccat
     3181 ttagccaaag accaactccg caaggagtcc tatgacaacc aagatatcgt agaccatttc
     3241 cagtcttacg tggggcaggt ggagcaagtg ctagtcagtc gaaccatgcc cataactgtc
     3301 gcccatgctc aagttttggc agacatgacg cccctctttt tccaagtgga ccagtccaag
     3361 ctggatttga gtcagttgac cgagattacg attgagggat tgctcttggt aggaactata
     3421 taaaaaatga aaccgcctct ggatatcaga agcggttttg ctttatttct catactcttc
     3481 gaaaatcaaa gtcagacgtt gttgacttga tttgatgagt ggaaagctcc agcggaggtt
     3541 tccagcctat cacttgacaa taataaataa agtgacagag ttctatctgc gccatataga
     3601 cacgaacgat gttcgctcta tttccaacca ccaaaggttc cccaaacctt ttgtagcgaa
     3661 ctttgttcgc tttatttccc accaccaaag gttccccaaa cctttggtgc tagtctgatt
     3721 ctgattttca ttgagtatca aattctgcct tgctttttac atcgccgtat tcttcagcga
     3781 cttctttact gaggatgtca gtatagctgg caagttggat gtcttgtcca tattttttac
     3841 ggagggcagt tgtgaccagg cggtaggcta ggttggcatt gcgggacagg atgggcccgt
     3901 ggaagtagct gccgaaggtg tttttgtagt gcaggccttc gccaccgtct tccttattgt
     3961 tgccattacc atagacaacc ttgcccagcg gtttttggtt gtcagctagg aaagtacggc
     4021 cttggtggtt ttcaaaaccg tagtaggttt cgttgaattc atcattgtga attttgatgt
     4081 caccgatata gcggttattg gtctggttga gggtgtagtg gcccatgatt cccagcccgt
     4141 caatcttgcg accgccagct tcgatgtaat attgcccgag caattggaag ccaccgcaga
     4201 tagccagcat gataccgtcg ttttcgataa agtctgctag gctgtctttt ttagttggta
     4261 aatcttttgc aagaatagat tgttcatagt cctgaccacc accaaagaag gcgatgtcgt
     4321 aaaaatcctt gtcaaattca tctgtcaggg aaacgatgtc cacctggaca cgagccccca
     4381 gcttttcagc tacatacttg agcatgagga tattgccatt gtcaccgtag gtgttcatca
     4441 aatcaccgta gaggtgggcg atgtggagat cataagtgta gtctttttca ggacttttta
     4501 atgacgtata gaccattatt tcatctcctt tccaacggct tggcgttgag ccagcaggtc
     4561 acggaattcg agcatagctg tataagtagc taaaatataa gcatgttggc tactcgattg
     4621 ctcaatcaag gtcatgatgt cttctagttt tggtgtttca gtaatctggt tctcaggata
     4681 gccagtcaca cggaggcgac gggcgatttc agacgaacga acaccacctg caaagacttg
     4741 aggaatgtcc atttgagtga tttgttcaaa gtcagcgtcc caaatccagc tggtatcaat
     4801 tccgtcagcg tagttggcat tgagaaggac tgacaggcta aaatcgtaag gagccaattt
     4861 catcatttca atagcctgag tcgcaccgac cgggttttta atcaagacca gtgtacaatc
     4921 cttatcaccg agtttaaagg tttcttggcg accaaagact gccttagatt tgtcaaatcc
     4981 tgccttgatt ttctcaggag ctacaccgaa aaattctgct acgctgacag ctgctagggc
     5041 attgtagatg ttgtagaggc ctccgatgtt gattttgtaa tcctgaccgt caatggcaaa
     5101 ggtagaagaa gtattggtga tttcttttag ttcggtcaac ttgtagtcca gttcaggtcg
     5161 gctaaagccg cagttgctac agatgtagct acccaagtta gcgtaggtat tcagcttgta
     5221 ctggataatc tggtggcaat gtggacagag aacgccctcg gtattgtaat gggccagacg
     5281 cggctcatgt tcttctgttg caaaaccata gtacttcact ggattgataa cgttcgttga
     5341 gttgaaaagc gggctgtcac cgttggctaa aatggttgcc tgtggagcct tggcagcccc
     5401 gtccaaaatc atctggtagg tggtataaat ctccccgtag cgatccatct gatcacggaa
     5461 gatattggta aagacaatca agctaggctt gataaaatcg gtcacacggg ccaagctagc
     5521 ctcatcaatc tccaagacgg caatcttctt gccgttttta tttttcttgg cagataaaaa
     5581 ggtagctgta atccctgtaa tcatattggc accgctggta ttggtcgtga tttctccaaa
     5641 ggcttcttgg aggataccaa ctgtcagggc ggtggtcaga gtcttaccgt tagtacctgt
     5701 cacaacaacg acttcataat ccttagccaa actatctaaa atatgtttat cgaatttgag
     5761 ggcaattttt ccaggtaggg tagtaccacg tcctagtttt ttcaaaatga actgggaact
     5821 ttttcctgct agaataccca aagctgtatt tattttcatg ggattatttt atcataaagg
     5881 tcactgattt tctagaatgg agtgtgttgg aacgtgatat attcctgcag taaatctgta
     5941 ctatttttaa caggaaggtc actattttct aaagaaaagg ggaaaatatg gtataatggg
     6001 tacattacta tgtatgagtt agaaagtatg agaatgatat gttaaaccta aaccagttac
     6061 tggatacagg gtattggtcg agtttgatag ccagtccttg gaccgcattg ttgcacctaa
     6121 ttgatattag tattgttgtt tatctgattt ataattttag taagtctatt gcaggtacta
     6181 aaattatgac attgattcga ggggtttttc tcttcattat tttccagatt atagcgagtt
     6241 tattcggtct gcagacgatt gcttggctga ttaatcaagt aatcacgtat ggggttattg
     6301 cagcagtagt tatttttgca ccagagttgc gtgctatgct ggaaaaactc ggtaggacaa
     6361 ctcagatttt tgggacaaat acagtgagtg cagaagaaaa gttaattgtt gcttttctca
     6421 aatcggttgc ttatatgtct ccgcgtaaaa ttggtgcact tgtggcagta gaacaagtcc
     6481 aaacattgca agaatataga gcaacgggga ttccacttaa tgcggatata tcgcaggaat
     6541 tgttaataaa tattttcatc ccgaatacac cgttacatga tggggctgta attgtcaagg
     6601 aagacaaggt agctgttgct tgtgcttatt tgcccctgtc agagagcgca ggaatttcaa
     6661 aggaatttgg aacacgacat cgtgcagcca ttggcttatc ggaggtatct gatgcgtttg
     6721 tatttattgt ttctgaagaa actggcagta tctctattgc acgaaacggg atatttaaac
     6781 atgatttgac tttggatgag tttgaagcag agttgcgagc gacttttatt tctgaaaatg
     6841 tagagaagaa gtccatctgg aagcgattag gaggtggcaa acatgaacga taagtttaaa
     6901 gctgtaggtc acttagcctt atctattttt ctagcattgt tgctcttttt ctatgcaaca
     6961 accaccaact ataaaaattc agaaacagct gcacagaaca cggagtcaga aacctatgtt
     7021 cacacactga gcaatgtacc gattgagatt gaatatgata caaacaagta ttttatttcc
     7081 ggattttctt cgacggtagc agttgaatta aggggctcta atcgtgttct cctacagaga
     7141 gaatccgatg agtcaactcg gacgtttcaa gtgactgcgg atttgagaga gttgagtgat
     7201 gggacacaga ctgtcaaact acaattgact aatttgccag caggagtgag tgcgacacta
     7261 gcaccagatg cgattaccgt taagattggt aaaaaagtta gcaaggcatt cccggtagca
     7321 ggtcgagtct atagtaatca atttgcagaa ggttacagtc tgtctaaggt ttcagtcaac
     7381 gtagataccg ttaaagtgac aacggatgaa gaaacaatgg ctaagattga tcaggtcgaa
     7441 gctgttgcga tggatgtgag caatctgtct gagaattata gtggtacagc taaattacag
     7501 gctgtagata gcgacggcaa tgtcttgcca gttgtactgt ctcagacgga agcaaatatg
     7561 caaattatac ttacaaaaac aaaataagag gttatgaaaa tgggtaaata ttttgggaca
     7621 gatggtgtcc gtggagaagc aaacgtagaa ttaacgccag aattagcatt caaattgggg
     7681 cgttttggtg gttatgtcct tagccagcat gagacggatg ttcctcgtgt ctttgtggcg
     7741 cgtgacacac gtatctcagg tcaaatgtta gaggctgcct tgattgcagg acttctatca
     7801 gtagggattc atgtgtataa attgggagtt ttggcgacac cgggtgttgc ccacctagtc
     7861 aaaactgaaa aagcaagtgc aggtgtcatg atttctgcaa gtcataaccc agcgcaagat
     7921 aacggtatca aattctttgc tggtgatggt ttcaaattgg atgatgcatt ggaagcggag
     7981 attgaagctc tcttggatgc tgaagaagat acacttcctc gtccatctgc acaaggcttg
     8041 ggtgatgtgg tagattatcc agaaggcttg cgtaaatacg aatccttcct tgtttcaaca
     8101 ggtattcagc tagaaggtat gaaagttgcc ttggatactg ccaatggcgc tgcctcaacc
     8161 tctgctcgtc aaatttttgc ggatttggga gctgatttaa ccgttatggc tgaacatcca
     8221 gacggattga atattaatga aggcgttggc tcaactcatc ctgaaaaatt gcaagaactg
     8281 gtcaaggaaa caggtagtca aattggactt gcctttgatg gtgacagtga ccgcttgatt
     8341 gctgtcgatg aaaatggtga tttggtagat ggcgaccgca tcatgtatat cgtcggcaag
     8401 tacctgtctg aaaaaggact tttggcaaaa aatacaattg tgacaaccgt tatgtctaac
     8461 cttggtttcc ataaggcctt ggaccgtgaa ggtattgaaa aagctgtgac cgcagttggt
     8521 gaccgttatg tggtggaaga aatgcgtaaa ggtggctaca atgtcggtgg tgagcagtca
     8581 ggacatgtga ttctgatgga ttataacacc acaggcgacg gccagttgac cgctgtgcaa
     8641 ttgaccaaaa tcatgaaaga aactggtaag aagttgtcag aattggcagc agaagtgacc
     8701 atttacccac aaaaattggt caatatccgt gtggaaaaca gcatgaaaga aaaggctatg
     8761 gaagtgcctg ctattgcagc tatcattgaa aaaatggaag cagaaatggc tggcaacggt
     8821 cgtatcttgg ttcgcccaag tggtactgag cccctcttgc gtgtcatggc agaagcgcca
     8881 acggatgctg aagtcgatta ctatgtggac accattgccg atgtggtccg tgcggaaatc
     8941 ggtttggatt aagaaaaaga cagagactgg aaggatttcc agcctctttt gtgaggaaat
     9001 tatgagtatt ttagaagtaa aaaatttaag tcatgggttt ggtgaccgcg cgatttttga
     9061 gaatgtctcc ttccgtcttt taaaagggga gcatattggt cttgtcggtg ccaatggaga
     9121 agggaaatcg accttcatgt ctatcgtgac aggtcaattg cagccagatg aaggtaaggt
     9181 tgaatggtca cgttatgtaa cggcaggtta tttggaccag catgctaaac tagaaaaggg
     9241 tcaatcagtc cgtgatgtct tgcggacagc attcgatgaa ctcttcaaga cagaagttcg
     9301 tatcaatgac atttacatgt ctatggcaga agagggtgct gatatggatg ccctcatgga
     9361 agaggttggt gagctacaag accgtctgga aagccgtgat ttctatacgc ttgatgccaa
     9421 gattgacgaa gtggcgcgtg cgcttggtgt catggactac ggcatggaca aggatgttac
     9481 ggagttatca ggaggtcaac ggacaaaagt tcttttggca aaattgctct tggaaaagcc
     9541 tgacatcttg cttctggatg agccgaccaa ctacttggat gctgaacaca tcgactggct
     9601 caaacgctac ttgcagaact atgaaaatgc ctttgtcttg atttcgcatg acattccttt
     9661 cctgaatgat gtgattaaca ttgtctacca tgtggaaaat cagctcttga ctcgttacac
     9721 aggcgactat taccaattcc aagaagtaca tgctatgaag cgggctcagt tagaggcagc
     9781 ctatgagcgc cagcagaagg aaatcgcaga cttgcaggac ttcgttaacc gtaataaggc
     9841 tcgtgttgca actcgaaaca tggccatgtc tcgtcagaag aagctggata agatggagat
     9901 tattgagctt caagcagaga aaccaaagcc atcatttgat ttcaaaatgg ctcgaactcc
     9961 aagtcgcttt atcttccaaa cgactgattt ggaaattggt tatgaccgtg tattgacacg
    10021 taaaccgctc aatctgacct ttgaacgcaa ccagaagatt gccattgtcg gtgccaacgg
    10081 tatcgggaaa tccactcttc ttaaaagttt gctggggatt attccaccgc tgggcggttc
    10141 tgtggagcgt ggggagtatt tggaactagg ctatttcgag caagaagtag ctggaggcaa
    10201 tcgtcagacc ccgctggaag ccgtttggga tgcttttcct gctcttaacc aggcggaagt
    10261 tcgggcagcc ttggctcgtt gcggtctgac ttccaagcat atcgaaagtc agatccaagt
    10321 cctttcaggt ggtgagcagg ccaaagttcg cttctgtttg cttatgaacc gtgaaaacaa
    10381 tgtcttggtt ctggacgagc cgactaacca cttggatgtg gatgccaagg atgaactcaa
    10441 acgtgccctt caagcctaca agggctctat cctcatggtc tgccacgagc ctgatttcta
    10501 tgaaggctgg gttgacgatg tctgggactt taatgacttg acttagattg aaagctatcg
    10561 aaaggtagct ttttggttca gtttgtaaag acgaaaatgt tattacatgc ttttcaaatt
    10621 ttcactacct gatactcatt ttttattcta ttgaccaagc ctcgtttttc tgctaatatg
    10681 aaaaaatgtt tgtttggagg taaatgagtg aataaaataa tatctgtatg gaaaaaaatg
    10741 aatttaatcc gaaaaatcgg aattggtgtt gttttgggag tgttactagg cttaattgct
    10801 ccaaaaataa cggtcattgc tctctttggt agtctatttg taggagcatt gaaagctata
    10861 gcccctcttt tggttctgac actagttgca catgctctat cacaagctcc tgctggtcaa
    10921 aaatcgaata tgaggatagt tatctgcttg tatctatttg gtacttttgc ggcggccttc
    10981 attgctgtag gagcaagcta tttattccct attaaactgg ttctttctac tacaacgact
    11041 acggacatta ctcctccaca agggattgct gaagtattcc aagacctctt gttgaaggtc
    11101 gttgacaatc caatcaatgc tcttgcaacg gctaattata ttggtgtgtt gacatgggcg
    11161 gcagtgtttg gcttggcctt tcgtcatgca agcaagacaa ccaaagattt attgcaatct
    11221 gcggcggaag tgacttctaa agttgtaggc tggattattg gtctggcacc atttggtatc
    11281 atgggcttgg tttttgatac cattgcaaat aatggtctga cagctttaaa agactatggt
    11341 ttactgctct tactcttggt tggaagcatg atttttgtcg cgcttgttgt caatcccttg
    11401 attacttttc ttgtaatgaa gaaaaatccg tacccgctgg tatttgaatg tcttcgggtt
    11461 agtggggtta cggcattttt tacaagaagt tcagcagcta atatccctgt caatatgcag
    11521 ctctgcaaac gtttaggagt ggatccagat acatattcag tatccattcc gctcggtgcc
    11581 acaattaata tggctggcgc agctattacg attaatattt taacaatggc agctgttcat
    11641 acacttggca ttagtgttga tttcagctca gctcttcttt tatccgttgt tgcatcacta
    11701 tcagcagcag gagcatcagg tgtagcagga ggttcgcttc tcctcatccc agtagcatgt
    11761 agtctttttg gtattccaaa tgagttagcc atgcaagtag ttggagtcgg atttgtggtc
    11821 ggagtgattc aggactcttg tgaaacagcc ctcaattcat cgaccgatgt cttgtttaca
    11881 gttgtagcag aacgctctgc ctggaaaaaa tagaaagaag ttgggtgacc aacttttttt
    11941 cttcgcttta cttctgaaat ctctttcatt ttatgataaa atagacttac tttgatatag
    12001 tcttttggtt tacttttaga actaggcaac gagccgcagg cataactgga gttaggcaag
    12061 gtgagttaac gaagtaataa aagataaacc aaatgacgat actgaaaagg agaacatatg
    12121 acagtagatt ttagagcaga gtttgacaaa cgcaaggacg agtttctagc ggacctcttt
    12181 gacctcctcc gcatcaattc tgagcgtgac gacagccagg cagatgccca gcacccattt
    12241 ggacccggac cagtgcatgc cttggacaag ttcctggaaa ttgctcagcg tgacggctat
    12301 ccgacgaaaa acgttgacaa ctacgcaggt cactttgaat tcggagaggg cgaagaagtc
    12361 ctcggtatct tcggtcactt ggacgtggtg ccagcaggaa gtggctggaa cactgatcca
    12421 tacgagccgc agatcatcga cggcaagctc tttgcccgcg gttcgtctga cgacaaggga
    12481 ccgaccatgg cctgctacta cggcttgaaa atcatcaagg agttgggcct tccgacctct
    12541 aaaaaagtcc gtttcatcgt cggtaccgac gaagaatcag gctgggcgga tatggattac
    12601 tacttcgagc acgttgggct cccattgcca gacttcggat tttctccaga tgccgagttc
    12661 ccgattatca acggcgaaaa gggcaatatc acagcttact tgcattttgc gggggaaaat
    12721 agcggagctg ctaaactgca ttccttcaca ggcggtctgc gtgagaacat ggtgcctgaa
    12781 tctgcgacag ctattatctc tggcgaccta gtagatctgg acagcaagtt agtagatttc
    12841 acagcagcct atggcctaaa agctgacgct gaaacccttg aaaatggtca agttcaagtc
    12901 accgtcatcg gaaaatcagc ccacggttca accccagaag aaggtgtcaa cggagcaacc
    12961 tatttggcaa aattcctcag ccaattcgcc tttgacggat cagcaaaatc ctatcttgac
    13021 ttagcaggac aagtccttct ggaagactac gatgcccaaa aactcggcgt agccatctac
    13081 gatgagcaaa tgggagctct ttctatgaac gctggtgtct ttaagtttga tgaaacctca
    13141 tcagataaca ccatcgccct caacttccgt tatccaaaaa ataccaaccc agaaaccatc
    13201 aaggctggtt tggaaaaact gggcgtggaa gctgttagcc tgtctgagca tggccatacc
    13261 ccacactatt gcccaatcga tgacccaatg gtcgcaaccc tcttgtctgt ttatgaaaaa
    13321 cacacaggct tgaaaggtca cgaacaagtg atcggtggcg gaacatttgg acgcttgctc
    13381 aaacgtggcg ttgcctacgg agccatgttc ccaggcgata tcaacaccat gcaccaagcc
    13441 aacgaattta tcgaagttga gcaactctac cgcgccgcta ccatctatgc agaagctatc
    13501 tacgaactca ttaagtaata catgagaggc tgggcaaaaa gcctagcacc actt
//
LOCUS       DASFRC010000051        13544 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.051, whole genome shotgun sequence.
ACCESSION   DASFRC010000051 DASFRC010000000
VERSION     DASFRC010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 13544)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13544)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13544
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.051"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..1119)
                     /locus_tag="U1087_001047"
     CDS             complement(<1..1119)
                     /locus_tag="U1087_001047"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011226005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HEM4755536.1"
                     /translation="MLLVKNGRVLDPQSGLDKVCDILMDGSKIVKIAESISEDVEQEV
                     IDATGLVVAPGLVDVHVHFREPGQTHKEDIHTGALSAAAGGFTSVVMMANTNPTISNV
                     ETLKEVLDSAKKEAIHIYSVATITDHFDGQNLTDFPALLEAGAVAFSDDGIPLTNAGV
                     VRKAMKLAKEQGCLISLHEEDPDLNGVLGLNEQVAEKHFHVCGATGVAEYSMVARDVM
                     IAYETGARVHIQHLSKAESVKVVEFVQGLGANVTAEVAPQHFSRTEDLLLIKGANAKM
                     NPPLRLESDRLAVIDGLKSGVISVIATDHAPHHADEKNVEDLTQAPSGMTGLETSLSL
                     GLTHLVEDGHLTLLQLLEKMTINPAKLYGLDAGYLAENG"
     gene            complement(1159..1812)
                     /locus_tag="U1087_001048"
     CDS             complement(1159..1812)
                     /locus_tag="U1087_001048"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001841111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEM4755537.1"
                     /translation="MEHSAWHELIKAQLPEHYFGKINQFLDYVYAGGTVYPPREKVFA
                     AIQTTDLEEVKVVILGQDPYHGPGQAQGLSFSVPNSVPAPPSLQNILKELTDDIGVKQ
                     DHDLTAWAEQGVLLLNACLTVPAGQANGHAGQIWEPFTDAVIKVVNSLDQPVVYILWG
                     AYARKKKALITNPKHLVIESAHPSPLSAYRGFFGSKPFSQANAYLTSQGRTGIDWLR"
     gene            complement(1822..2748)
                     /locus_tag="U1087_001049"
     CDS             complement(1822..2748)
                     /locus_tag="U1087_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM4755538.1"
                     /translation="MISAIVPCFNEEEAIPYFYDAMEKVRKEMGEQFEYIFVNDGSKD
                     GTLTVLRQLSGQDRAVRYLSFSRNFGKEAALYAGLQAAQGELVTVMDVDLQDPPEMLM
                     EMKAMLDGNPDLDCVGTRRVSRDGEPPIRSFFAKLFYKLMNKISQVEVVDGARDFRLM
                     RRHMVDAILSVSEYNRFSKGIFAWVGFETEYLPYENVERVAGETSWSFWKLLSYSIEG
                     IINFSDTPLNIASYTGFFTFLLSLVLMVFVVFKTLVFGDPTIGWPSTICIILFLGGLQ
                     LMTIGILGKYLAKVFLETKKRPIYIVKEKSSN"
     gene            complement(2857..3489)
                     /locus_tag="U1087_001050"
     CDS             complement(2857..3489)
                     /locus_tag="U1087_001050"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HEM4755539.1"
                     /translation="MTLATEIASHLLDIKAVHLRPEKPFTWASGIKSPIYTDNRITLS
                     YPETRNLIEDGFVQRIEEEFPEVEVIAGTATAGIPHGAIIADRMNLPFAYIRSKPKDH
                     GAGNQLEGRIVKGQKMVVVEDLISTGGSVLDAVAAAEREGADVIGVVAIFTYELPKAD
                     RNFDNAGVKLVTLSNYSELIKVAKVQGYINADGLNLLKKFRQNQETWQED"
     gene            complement(3626..3952)
                     /locus_tag="U1087_001051"
     CDS             complement(3626..3952)
                     /locus_tag="U1087_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HEM4755540.1"
                     /translation="MDKVYQVIIDRPIGYIDKFGNQYPINYGYVPNLLAGDGEEQDVY
                     IISKAIRQSLTAFEGKLVAIIHRRDDVEDKWVLTGLDEKLTVTEIKEKTNFIEQYFDS
                     WIEMVD"
     gene            complement(3945..4640)
                     /gene="pyrF"
                     /locus_tag="U1087_001052"
     CDS             complement(3945..4640)
                     /gene="pyrF"
                     /locus_tag="U1087_001052"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HEM4755541.1"
                     /translation="MKETRPIIALDFAGKEEVQSFLEQFPPDEKLYVKVGMELYYAEG
                     PGIINYLKGCDHSIFLDLKLHDIPNTVESAMKVLAKLGVDMTNVHAAGGVEMMRAARR
                     GLGKDAVLIAVTQLTSTSEEQMRTDQNIQTSLQEAVVHYAQRAQEAGLDGVVCSAHEV
                     ALIKDATSSDFVCLTPGIRPTGGEVGDQKRVMTPADAARIGSDYIVVGRPITKSEHPY
                     QTYLSIKEEWNRG"
     gene            complement(4805..5746)
                     /locus_tag="U1087_001053"
     CDS             complement(4805..5746)
                     /locus_tag="U1087_001053"
                     /EC_number="1.3.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HEM4755542.1"
                     /translation="MTKRLAISLPGLDLKNPIIPASGCFGFGQEYADYYDLNQLGSIM
                     IKATTRHPRYGNATPRVAETPAGMLNAIGLQNPGVDVVLSEKLPWLEQHFPDLPIIAN
                     VAGFSNEEYAYVSGKISKAPNVKAIELNISCPNVDHGNNGLLIGQVPELAYQAVKAAV
                     EASSVPVYVKLTPSVADITLLAKAAEDAGATGLTMINTLVGMRFNLKTRQPILANGTG
                     GMSGPAVFPVALKLIRQVAQVTDLPIIGMGGVDTADKAIEMMVAGASAVGVGTANFTD
                     PFACPKIIQDLPKRMEVYGIDSLEGLRREIRHSLGKR"
     gene            complement(5756..6646)
                     /locus_tag="U1087_001054"
     CDS             complement(5756..6646)
                     /locus_tag="U1087_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014635980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase electron transfer
                     subunit"
                     /protein_id="HEM4755543.1"
                     /translation="MINRANTAFFSCNLASQQGFFSISTFLFSVSLLYRIGEKMILKE
                     QMLLVDQVQLAPRIFAMTLQGNMVQDMKMGQFIHIRVPDDSMLLRRPISISEIDRNKS
                     QCRIIYRVEGQGTEVFSKMTVGQYLDVMGPLGKGFEVDFLKEGNRILIIGGGIGVPPL
                     VEVAKQAEFRGVNVTSVIGFATKEAVILEEELASYGMVYVTTDDGSYGRKGNVATVVE
                     ELTNEFAAIYSCGAPAMMNYVDQRFQEHPHAYISLEARMACGMGACYACVVKPKEGQE
                     HENKRVCKEGPVFATGSLIL"
     gene            6743..7654
                     /locus_tag="U1087_001055"
     CDS             6743..7654
                     /locus_tag="U1087_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM4755544.1"
                     /translation="MRIQQLYYIIKIAETGSMNEAAKQLFITQPSLSNAVRDLEKEMK
                     IKIFFRNSKGITLTKDGMEFLSYARQIVEQTELLEDRYKNPNAKRQLFSVSSQHYAFV
                     VNAFVSLLKETEMEDYELFLRETRTWEIIDDVKNFRSEIGVLFLNHFNRDVLLKLLDD
                     NRLSYTTLFTAKPHVFVSKTNPLAQRKSITLDDLVDFPYLSYEQGIHNSFYFAEEILA
                     QEHHKKSIVVSDRATLFNLLIGLDGYTIATGILNSNLNGDNIVSIPLEFDDEIELVYI
                     QHEKALLSDMGEKFINYLLEEVKFDQK"
     gene            7818..8945
                     /locus_tag="U1087_001056"
     CDS             7818..8945
                     /locus_tag="U1087_001056"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HEM4755545.1"
                     /translation="MAQNKMLAMILAGGRGTRLEGLTKKVAKPAVAFGGKYRIIDFPL
                     SNCANSGIDIVGVLTQYEPVLLNSYVAQSQRWGLDVQGSGVFVLPPSEKIEGFGLYKG
                     TADAITQNIDFIDLHDPEYVLILSGDHIYKMNYDKLLDTHIQKKADATIAVIEVPIKE
                     ASRFGIMNTDEDYRIEEFEEKPENPKSNLASMGIYIFTWKTLKKYLQEDDKLDTSSHD
                     FGHDIIPKYLEDGRTLIAHPFRGYWKDVGTVNSLWESNMDLIDHAGDLDLSDRSWRIY
                     SEDKGSPAQVIGATATVKSAYIDKGAIIDGTVEHSVISTDVQVNQNAVVKNSVILPGA
                     IIGEGVELDYVIVAENIKIADGVKLTGDIDHILLIDKNVTK"
     gene            8958..10073
                     /gene="glgD"
                     /locus_tag="U1087_001057"
     CDS             8958..10073
                     /gene="glgD"
                     /locus_tag="U1087_001057"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase subunit
                     GlgD"
                     /protein_id="HEM4755546.1"
                     /translation="MLRNTLGIVNIEGNNVHFGDVMKHRGVQAFGFLGRYRLIDFALS
                     NMSNSGITEFQVYMPVEMRSTIQHVGTGKHYNINSKRGTLRLLNSATDPNSVYRHDIN
                     AFTENIHYIENSTKDYVLVAPSYFIYSQDFSKVMDDHIATDADITVLYKNVSDAKENF
                     IGCQTLKFGEDRRVVAFEENHGKYKNRPVSLEAYIMKRTTFIDLIKRANKVSSLYWLK
                     DILRDTVDQYKIMGYAHRDYVACINTTASYFNTQIELIDQDTRKLLFKHDWPIHTQTS
                     DSSPCLYGPLAEVKRSLISNGANINGQVENSVIDRDVIIEEGVVIKNSIILNGVTIKS
                     GANIENAIIDKATKIIHPIDIKGSETSPSYLKPHQII"
     gene            10082..11527
                     /gene="glgA"
                     /locus_tag="U1087_001058"
     CDS             10082..11527
                     /gene="glgA"
                     /locus_tag="U1087_001058"
                     /EC_number="2.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen synthase GlgA"
                     /protein_id="HEM4755547.1"
                     /translation="MTKKSVLFVASEGLPFIKTGGLADVIGSLPKELVKQGLDVRVVL
                     PLYKKIAVNNHSDFDYVSSFDVRAGDIQSMANVYSQVVDGVTFYFIEHRDFFERDELY
                     GYDDDAMRFGYFQHATCRLLEALHFFPDVMHTHDWHTAALPFLCRTFYSYREEFRNIK
                     HVFTIHNLAFQGIFHKQALWSALGMDYSYYLDGIARFHDECISFMKLGILYADKVTTV
                     SETYAHEILTEEFGENMQHVLELRKYDLVGIVNGIDYDSWDSQTDQYLVRNYSLETIE
                     SKKANKLALQAQFALPQDENVLLIGIVSRLTWQKGFYLLTEVLGHLLQAHVQFVILGN
                     GEEDIENAFNHFKHAYPDKFAFYRGYNEPLAHQIYAASDLFLMPSMFEPCGISQLISM
                     HYGTLPLVRETGGLVDTVAPYNMSTKEGTGFSFGGRDAYNMRQVYDLALQTYYDRPDD
                     WYAMVEQAMKRDFSWTASAEKYIWLYREISG"
     gene            11600..13438
                     /gene="glgB"
                     /locus_tag="U1087_001059"
     CDS             11600..13438
                     /gene="glgB"
                     /locus_tag="U1087_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching protein GlgB"
                     /protein_id="HEM4755548.1"
                     /translation="MTEFTDLDLYYMNAGEHTTLYEKMGAHIIKERNKIIGTQFRVYA
                     PNAREVFLVGNFNEWQRSHSMEREIDGVFQLYVDGLKSLEDYKYLIITHDGREIYKAD
                     PYAFFSQVRPDTASTTYNSRYKFKDDLWMYNRVNYDFKEQPVSIYEVHLGSWKQKFAN
                     KNEGGAPVEAFNSYKEITPLLIEHIKENNYTHIELLPITEHPLDASWGYQVTGYYSPT
                     SRYGKPDELKYLVDQCHQAGIGVILDWVPLHFCKDAHGLYQFDGSWLYEYSYEQDREN
                     HQWGTANFDLGKGLTRSFLLSNLKYWLEYFHFDGIRVDALSYLLYWRGETDEDKINHA
                     AIDFIKRVNAMVHTDYKGVLMIAEDSSSFPKVTHSLEDGGIGFDMKWDLGWMNDTLKF
                     VERPAIYRKYHSNEITFGMYYNQNEQFLLPLSHDEVVHGKHSIIEKMNGDYEDKFHLA
                     RVYYSFYFAHPGKKLLFMGNEWGHIREWHEYTEMDWGLLQFPIHHSFYQMMKTLSTFY
                     KEHDAFWKYDYQAYEKGFNWVKIDEEASLYAFSRTSDVQEILTIHNFNDQELFDVHLD
                     LPADSEYKLVFSSNAIPMDTFSLYPDENGARITVPRLTSFYLERVK"
BASE COUNT         4050 a         3057 c         2561 g         3876 t
ORIGIN      
        1 gccattttca gcaagatagc cagcatcaag gccgtagagt ttggcagggt taatagtcat
       61 cttctccagc aattgcaaga gagtgaggtg tccatcttct accagatgag ttagacctaa
      121 tgaaagtgag gtttctaaac ctgtcatacc tgacggagct tgcgtaaggt cctctacatt
      181 tttctcatct gcatgatgag gtgcatggtc cgtcgcaatg acagagataa caccagattt
      241 caacccatca atcacagcca agcgatcact ttctaatcgt agtggcggat tcattttagc
      301 attggcacct tttattagaa gtaagtcctc agttcgtgaa aaatgttggg gtgctacttc
      361 tgccgtgacg tttgctccga gaccttgaac aaattcaacc accttgaccg actcggcttt
      421 ggatagatgc tggatatgaa cacgcgcacc tgtttcatag gcaatcatga catcgcgagc
      481 gaccatgctg tattctgcta cgcctgttgc tccacaaaca tgaaaatgtt tttcagccac
      541 ttgctcgttg agtcccaaga caccattcag gtcagggtct tcttcatgca gactgatgag
      601 acagccctgc tctttggcca atttcatagc ttttctaacc acgccagcat ttgtcaaagg
      661 aataccgtcg tccgaaaagg ccaccgctcc agcttccagc aaagcaggaa aatcggtcag
      721 attttgcccg tcgaaatgat ctgtaatggt tgccacacta taaatgtgaa tagcttcttt
      781 tttagcggaa tccaatactt cttttaaggt ttcaacattt gaaatcgtcg gattagtgtt
      841 agccatcatg acaacagaag taaaaccacc cgctgctgca gaaagagctc ctgtatgaat
      901 atcttcttta tgggtctgac caggctcccg aaaatgcaca tgaacatcga ccaaaccagg
      961 agcaacgact aatcctgtcg catcaatcac ttcttgctca acatcttctg aaatcgactc
     1021 cgcaatctta acaatcttac ttccgtccat caagatgtca caaaccttgt ctaaaccgga
     1081 ttgcggatcc aatactcgac catttttcac taataacatt catattctcc tttgtagtac
     1141 caaagccatt accatctact atcgcagcca atcaattcct gttctgcctt gtgaagtcaa
     1201 gtaggcattt gcttgtgaga agggcttgct tccaaagaaa cctcgatagg ctgaaagagg
     1261 gcttggatga gcagattcga taaccagatg ttttggattg gttatcaacg cctttttctt
     1321 gcgagcataa gcaccccaaa gaatatagac aacaggctgg tctaagctat tgaccacctt
     1381 aataacagcg tccgtaaaag gctcccagat ttgccctgca tgtccatttg cctgacctgc
     1441 tggaacagtt aaacaagcat tgagcaaaag cacaccttgt tccgcccatg ctgtcaaatc
     1501 atgatcttgt ttgacgccaa tatcatccgt caattctttt aagatgtttt gaagagatgg
     1561 cggagctggt accgagttcg gaacagaaaa tgacaagccc tgtgcttgac caggtccgtg
     1621 atagggatcc tgtcccaaaa taactacttt aacctcttcc aaatccgttg tttgaatggc
     1681 agcaaatacc ttctcacgag gcggataaac ggttccacca gcataaacat aatctaaaaa
     1741 ctgattgatt ttaccaaaat aatgctctgg caactgtgcc tttatcaatt cgtgccaagc
     1801 tgaatgttcc ataaactgct cctagtttga acttttctct ttaacaatat aaatcggacg
     1861 tttcttcgtt tccaagaaaa cttttgccaa atatttaccg agaataccaa tggtcatcaa
     1921 ctgcagacct cccaaaaata ggatgataca aatagtcgac ggccagccaa ttgtaggatc
     1981 tccgaacacc aaggttttga aaaccacaaa gaccattaga actagcgata gcaggaaggt
     2041 gaagaaacct gtataggagg caatattcaa aggtgtatct gaaaaattga tgattccttc
     2101 aatagaataa gaaagcaatt tccagaaaga ccaactagtt tcgccagcga ccctctcaac
     2161 attttcatag ggcaagtatt ctgtttcgaa tcctacccaa gcaaaaattc ctttcgaaaa
     2221 gcgattgtat tcagacacag atagaatggc atctaccatg tgacgacgca tgagacggaa
     2281 atcacgggca ccgtctacta cctcgacctg gctgatttta ttcatcaatt tgtagaataa
     2341 ttttgcaaaa aagctacgaa tcggtggttc accatcacga ctgacacgac gggttccaac
     2401 gcaatctaaa tctggatttc catccaacat agccttcatt tccatcaaca tttcaggtgg
     2461 atcttgtaaa tcaacatcca tgactgtcac tagctcacct tgcgcagctt gtagacctgc
     2521 atagagagca gcttctttcc cgaaattcct tgaaaaggaa agatagcgaa cagctcggtc
     2581 ttgaccagac aattggcgta aaaccgttaa tgtcccatcc tttgaaccat cattgacaaa
     2641 aatatactca aattgttccc ccatctcctt acgaactttc tccatagcat cgtaaaaata
     2701 gggaattgcc tcttcttcat taaaacaagg cacgatagct gaaatcatat tcttctcctc
     2761 atacggtcaa ttattgtatt ctcaaaatac gttagagact attataccat tttacaggat
     2821 aagttcccag aaatcgtgcg tgggctcgtt ttaaatctag tcttcttgcc aagtttcttg
     2881 attttgacgg aactttttaa gcagattcaa accatctgca ttgatatatc cctgtacttt
     2941 tgcgaccttg attaactctg aataattgct aagtgtcacc aatttcacgc cagcattatc
     3001 aaaattacga tctgcctttg gcaattcata ggtaaagatt gccacaacac caataacgtc
     3061 agcgccttca cgctcagcag ctgctacggc atcaagtact gaccctccag tagaaatcag
     3121 gtcttcaacg actaccattt tttgtccctt gacgatgcga ccctctaatt gattccctgc
     3181 accatgatct tttggtttgc tacgtatata tgcaaatggc aaattcatcc gatctgcaat
     3241 gatagcacca tgaggaatac ctgctgtggc agttccggca atcacctcaa cctcaggaaa
     3301 ttcttcttca atgcgttgga caaagccatc ttcaatcaaa tttcgagttt caggataaga
     3361 tagtgtaata cgattatctg tatagatagg ggatttgata cctgatgccc atgtaaatgg
     3421 cttttctgga cgcagatgaa ctgccttaat atccaataag tgtgatgcga tttctgttgc
     3481 tagtgtcata atagacctcc ttctaaatgc gtaccattcc aacatgacca tcccgccgaa
     3541 tagcctgtca ctcctaaagc attggttcaa tctatgaacc ctataaaaac tatatttatc
     3601 caggttgaat tcttacagac ttctcttagt ccaccatttc aatccatgaa tcaaaatact
     3661 gttcaatgaa attggttttc tcttttattt ctgtcacggt aagtttttca tcaagacctg
     3721 tcagaaccca cttatcctcg acatcatctc tgcgatgtat aatcgcgacc aatttcccct
     3781 cgaaagctgt caaggactgc cgaatagctt tggaaatgat gtaaacatct tgctcttcac
     3841 catctccagc caatagattt ggaacatagc cgtaattaat gggatactgg ttgccaaatt
     3901 tatcaatata cccgataggt ctatcgatta taacctgata aaccttatcc acgattccac
     3961 tcctctttaa tagacaaata ggtctggtaa ggatgttctg attttgtaat cgggcgacct
     4021 accacaatgt aatcactacc gattcgagca gcatctgctg gtgtcataac tcgtttctga
     4081 tcgcctactt caccgccagt cggacgaatc cctggcgtca ggcacacaaa atcagaactc
     4141 gtagcatctt taatcaaagc cacctcatga gctgaacaaa ccaccccatc aagaccagct
     4201 tcttgtgctc tttgagcata gtgaacaact gcttcctgca aactagtctg tatattctgg
     4261 tccgttctca tctgctcctc tgaggtagag gtcaactgag tgaccgctat taaaacagca
     4321 tccttaccca atccccttcg tgctgcccgc atcatctcaa caccaccagc agcgtgaacg
     4381 ttggtcatat ccacaccgag ttttgccaag actttcatag cagactcgac ggtattagga
     4441 atatcatgca gtttcaaatc tagaaaaata ctgtgatcgc agcctttcaa ataattgata
     4501 atacctggtc cctccgcata atacaactcc attccaacct ttacatagag tttctcatct
     4561 ggtgggaact gttccaaaaa agactggact tcttctttac ctgcaaagtc aagggcaata
     4621 attggtcttg tttctttcat aaaatccttt catttacaca aaaatccctg ccaaatcggt
     4681 cagggatgtg cacgaattca gcttgaaaat cacctttcaa gcatattaca tgacaccttc
     4741 ctagcctctc tggacttagt taaaggagat attttcttta tattactctt ttattttacc
     4801 tttgtcaacg cttacccaag ctatgtctaa tttctcggcg taaaccttcc aaactatcaa
     4861 taccataaac ttccatgcgt tttggcaagt cttgaataat ctttggacaa gcaaatgggt
     4921 ctgtaaagtt ggctgttcct acccctacag ctgaagctcc tgcaaccatc atctctatag
     4981 ccttgtccgc cgtatccaca ccacccatac caataatcgg taaatcagtc acctgagcaa
     5041 cctgacgaat gagtttgaga gcaaccggaa aaactgctgg acctgacatt cctcctgtac
     5101 catttgccaa gattggttgt cgcgttttga gattgaatcg cataccaacc aaggtattta
     5161 tcatcgtcaa gccagtcgct ccagcatcct cagcagcctt ggccaacagg gttatgtctg
     5221 ccacacttgg tgtcagctta acgtaaacag gtacagatga ggcttcaact gctgctttta
     5281 ctgcttgata ggctaattct ggcacctgtc caatcaagag accattattt ccgtggtcca
     5341 cattgggaca ggaaatgttc agctcgatag cttttacgtt tggagccttt gaaattttcc
     5401 ctgacacata ggcatattcc tcattggaaa agccagctac attggcaatg attggcaagt
     5461 ctgggaaatg ttgctctaac catggtaatt tttcggataa gactacatca acgcctggat
     5521 tttgaagtcc aatggcattg agcatacctg ctggtgtctc ggctacacgg ggagtcgcat
     5581 tgccataacg aggatgacgg gtagtcgcct taatcataat ggatccaagc tggttaaggt
     5641 cataataatc tgcatactcc tgaccaaaac cgaagcagcc agaggctgga atgatgggat
     5701 ttttcaagtc caagcctggt aaggaaatcg ctaatcgttt tgtcatatca acctcctata
     5761 aaatcagact accagtcgca aagactggac cttccttgca gacacgcttg ttctcgtgtt
     5821 cttgtccctc tttgggtttg acaacacagg catagcatgc ccccatcccg caagccatcc
     5881 tagcctccag tgaaatgtag gcatgaggat gttcctgaaa gcgttggtca acatagttca
     5941 tcatagctgg cgccccacat gagtaaatgg ctgcaaactc gtttgtcagc tcttcaacga
     6001 ccgttgcaac attcccctta cgcccatagg aaccatcatc cgttgtgaca taaaccatcc
     6061 cataacttgc cagctcctct tccaaaatga cggcctcttt ggtggcaaag ccaatgactg
     6121 acgtgacatt gacaccacgg aactcagcct gtttggctac ttccaccaag ggaggaacac
     6181 cgattcctcc tccaatgatg agaatgcggt taccttcttt gagaaagtct acttcaaacc
     6241 ctttcccaag cggtcccatg acatccaaat actgcccaac agtcattttc gaaaagactt
     6301 ccgtcccttg accttccact cggtaaataa tccgacattg agacttattc cgatcaatct
     6361 cggaaataga aatcggtctc cgcaagagca tggaatcatc tgggacacga atatggataa
     6421 attgccccat tttcatatct tggaccatat taccctgcaa ggtcatagca aaaattcgtg
     6481 gcgctagttg gacttggtcc accagtaaca tctgttcttt taaaatcatc ttttctccta
     6541 ttctatataa caatgacaca gaaaacaaga aagtcgatat agagaaaaaa ccttgctggc
     6601 tagcaaggtt acacgaaaag aaggcagtat ttgccctatt tatcacgttc ccttcttcgc
     6661 ctctctggac tcagttaaag gatatatttt cagcattata cattttttag aataatttgt
     6721 caaatcatgt tacaatagag gtatgagaat ccaacaatta tactatatta tcaaaattgc
     6781 agaaacaggc agtatgaatg aggctgccaa acaactcttc attacccaac ccagcctttc
     6841 caacgctgta cgagacctgg aaaaagaaat gaaaattaaa atctttttcc gtaattctaa
     6901 gggcattacc ctgacaaagg atggcatgga gtttctttcc tacgctcgtc aaattgttga
     6961 gcagacagag cttttagaag atcgctataa aaatccgaat gcaaaacgcc aactatttag
     7021 cgtctcttct caacactatg cctttgtcgt caacgccttt gtctcacttt tgaaagaaac
     7081 tgagatggaa gattatgaac tcttcctacg tgaaacacgg acctgggaaa tcattgatga
     7141 cgttaagaat ttccgctcag aaatcggagt gcttttcctc aaccatttca accgtgatgt
     7201 cctgctgaaa cttttggatg acaatcgact atcctataca actctcttca ctgccaaacc
     7261 acatgtattt gtcagcaaaa ccaatccttt ggcacaaaga aagtcaatca ctctcgatga
     7321 tttggtagat ttcccctatc tcagctacga gcaaggtatt cacaactcct tctactttgc
     7381 agaagaaatt ctagcccagg aacaccataa aaaatcgatt gtcgtatctg accgtgccac
     7441 actcttcaat ctcttaatcg gtctagatgg ctatacaatc gcaacaggta tcctcaattc
     7501 aaaccttaac ggagataata ttgtatcaat tcctctggaa tttgatgatg aaatcgaatt
     7561 ggtctatatt caacacgaaa aggcattgct gtccgacatg ggagaaaaat tcatcaatta
     7621 cctacttgaa gaggtaaaat tcgaccaaaa ataaatacca ctttatatag acaaacaaaa
     7681 tacaatatgt tatgatacat ttatgaaaga cgttgaaaag aaaaatgaaa ataattcact
     7741 tttctttaag gaaacgcttt cattttttta tactctatgc tataatacat gtatcatata
     7801 tattaaggag tggttagatg gctcaaaata aaatgttagc tatgattctt gctggtggac
     7861 gtggaacacg tctagaaggg ttgacaaaaa aagtcgccaa accagcggtc gcatttggcg
     7921 gaaagtaccg cattattgac tttcctctca gtaactgtgc caactcaggt attgatattg
     7981 tcggagtttt gactcagtat gagcctgttc tcttgaactc atacgttgca cagtctcaac
     8041 gttgggggct tgatgtacaa ggatctggcg tctttgtatt accaccgagt gaaaaaatcg
     8101 aaggtttcgg actttacaaa ggtacagccg acgctattac acagaacatt gatttcattg
     8161 atcttcacga tccagagtac gtattgattt tgtctggtga ccacatctat aagatgaact
     8221 acgacaaact ccttgataca catattcaga aaaaagcaga tgccacgatt gcggttatcg
     8281 aagttccgat caaagaagct tcacgttttg gtatcatgaa tacggacgaa gattaccgta
     8341 ttgaagaatt tgaagaaaaa ccagaaaatc ctaagagcaa tttagcatca atgggtatct
     8401 atatcttcac ttggaagacc ttgaaaaagt accttcaaga agatgacaaa ttggacactt
     8461 catctcacga ttttgggcac gacatcattc cgaaatactt agaagatggc cgcactctca
     8521 ttgcccatcc attccgtggt tattggaaag acgtaggtac cgttaacagc ctctgggaat
     8581 ccaatatgga cttgattgat cacgctggag atttggacct ttctgaccgc tcatggagaa
     8641 tctattcaga ggataaggga tctcctgccc aagtcattgg tgcgactgca actgttaaat
     8701 ctgcctatat tgataaaggg gcaatcatcg atggtactgt agaacattct gttatttcaa
     8761 cagatgtgca agtcaaccaa aatgccgtag taaaaaattc tgtcatccta cctggtgcta
     8821 ttatcggcga aggtgttgag cttgactacg tcatcgtcgc tgaaaatatt aaaattgctg
     8881 acggagttaa actcacagga gacatcgacc atatcctctt gatcgacaag aatgtaacca
     8941 agtaagaaag gactgctatg ctaagaaata ctctcggaat tgtaaatatt gaaggaaaca
     9001 acgtacattt tggtgacgtg atgaagcacc gtggcgtaca agctttcggt ttcttaggtc
     9061 gttatcgcct aattgacttt gctctatcca atatgtcaaa ctctggaatt acagaattcc
     9121 aagtatacat gcctgtcgaa atgcgttcaa caattcagca cgttggtaca ggaaaacact
     9181 ataatatcaa cagtaaacgc ggtacccttc gcttgctcaa tagcgcaaca gacccaaata
     9241 gtgtctatcg tcacgatatt aatgccttca cagaaaacat ccactacatc gaaaattcta
     9301 caaaagatta tgtgctagtt gctccatctt acttcatcta tagccaggat ttttcaaaag
     9361 tcatggatga ccatattgca acggatgctg atattaccgt tctttataaa aacgtttcag
     9421 atgctaaaga aaatttcatc ggctgccaaa ctctcaaatt tggtgaagac cgtcgtgtcg
     9481 tagcttttga agaaaaccac ggtaaatata aaaaccgtcc cgtttccctg gaagcctaca
     9541 ttatgaaacg gactacattt atcgacttga ttaaacgtgc taacaaagta tcgtctctct
     9601 actggttaaa agatattttg cgtgatacag ttgaccagta caagattatg ggctatgcac
     9661 atcgtgatta tgtcgcatgt atcaatacga ccgcttccta cttcaatact caaattgaat
     9721 tgattgacca agatacccgc aaactcctct tcaaacatga ttggccaatc catacccaga
     9781 caagtgatag ctcaccatgt ttatatggtc cattggcaga ggtcaaacgt agcctaattt
     9841 caaatggagc gaatatcaat ggtcaagtcg aaaattcagt cattgaccgc gatgttatca
     9901 ttgaagaagg tgttgttatc aaaaactcaa tcattctcaa tggcgtgaca atcaagagtg
     9961 gggcgaatat tgaaaatgca attatcgata aagcaactaa aattattcac ccaattgaca
    10021 tcaagggaag cgaaacttcg ccttcatact tgaaaccaca ccaaatcatt taggagctaa
    10081 catgacaaaa aaatctgttc tctttgtagc atccgaggga cttccattca tcaagactgg
    10141 cggattggct gatgttattg gctctttacc aaaagaattg gtgaaacagg gtttagatgt
    10201 ccgagtcgtt ctaccactct acaaaaaaat tgcagtaaac aatcactctg atttcgatta
    10261 cgtatcaagt tttgatgtgc gggctggcga catccaatct atggcaaatg tttacagtca
    10321 ggttgttgat ggagtaacat tctattttat tgagcaccgc gatttctttg aacgagatga
    10381 actatatgga tacgacgatg atgctatgcg ttttggctat ttccaacatg ctacatgtcg
    10441 tctgttagaa gcacttcatt tcttcccgga tgtcatgcac acacatgact ggcacactgc
    10501 tgcccttcca ttcctttgcc gtactttcta tagctaccgc gaagaattcc gcaatatcaa
    10561 gcatgtattc actattcata acttggcttt tcaaggtatt ttccacaaac aagcactttg
    10621 gtcagcgctt ggcatggact atagctacta tttggatggc attgcacgtt ttcatgatga
    10681 atgtatcagc ttcatgaagc ttggtatcct atacgctgac aaggttacta cagtttctga
    10741 aacttatgct cacgaaatcc taacggaaga attcggcgaa aacatgcaac atgtactaga
    10801 gttgcgcaaa tatgacctgg ttggtattgt caatggtatc gactatgaca gttgggatag
    10861 tcaaacagac caataccttg tgagaaatta tagtcttgaa acgattgaaa gtaaaaaggc
    10921 taataaactg gccctgcaag cacaatttgc ccttccacaa gatgagaatg tcctattgat
    10981 aggtatcgtc tctcgtttga catggcaaaa agggttctac ctcttgaccg aggtacttgg
    11041 ccatcttctt caagcccatg tccaatttgt tatcttaggc aatggtgagg aagacattga
    11101 aaatgccttt aatcacttta aacatgctta tcctgataaa tttgcattct accgtggtta
    11161 caatgaacca cttgcccacc aaatttatgc agcaagtgat ctcttcctca tgccttctat
    11221 gtttgaacca tgcggcatta gccagttgat ttcaatgcac tacggaacac tccctctagt
    11281 gcgtgaaaca ggtggcttgg ttgatactgt agcaccatac aatatgtcta ccaaggaagg
    11341 aactggtttt agctttggag ggcgtgacgc ttacaatatg cgacaagtct atgatttagc
    11401 ccttcaaacc tactatgacc gtcccgatga ctggtatgct atggttgaac aagctatgaa
    11461 gcgtgatttt agttggacag cttcggcaga gaaatacatc tggctctacc gtgaaattag
    11521 tggttaggaa ataagatgaa aaaataaact gaatcggagt gtgaccctag tccactcctt
    11581 ttcggcaatg gagattgcta tgacagaatt tactgaccta gatttatatt atatgaatgc
    11641 tggtgagcat accactcttt acgaaaaaat gggtgctcat attataaaag aacgaaacaa
    11701 aattatcgga acccaatttc gtgtctatgc cccaaatgcc agagaagtat tcttagttgg
    11761 caattttaac gagtggcaac gcagtcactc tatggagcgt gaaattgatg gagtgtttca
    11821 actttatgta gacggattaa aatcccttga agattataaa tacctgatta tcacacacga
    11881 tgggcgtgaa atatataagg ctgaccctta tgcatttttc agccaagttc gtccagacac
    11941 tgcctctaca acctacaatt cgcgttataa attcaaagat gacctctgga tgtataatcg
    12001 tgttaactat gattttaaag aacagccggt atccatctac gaggtgcact taggttcgtg
    12061 gaagcaaaaa tttgctaata aaaatgaagg aggagctcct gtagaagctt tcaatagtta
    12121 taaggaaatt actccacttc tcatcgaaca tatcaaggaa aataactaca cacatattga
    12181 attattgcca attaccgagc atcctctcga tgcgtcttgg ggctatcagg taacaggcta
    12241 ctatagtcca actagtcgct atggcaagcc agatgaactt aagtatttag ttgaccaatg
    12301 tcaccaagca ggaatcggag tgattcttga ctgggtacca cttcatttct gtaaagatgc
    12361 tcacgggctc taccagtttg atggtagttg gctatacgaa tactcctacg aacaagaccg
    12421 tgaaaaccac cagtggggga ctgctaattt tgaccttgga aaaggactga ctcgttcttt
    12481 ccttctttct aatttaaaat actggttgga atatttccat tttgatggca tccgtgttga
    12541 tgcactatct tatctcctct attggcgtgg tgaaacagat gaggataaga taaatcatgc
    12601 cgcaattgac tttatcaaac gtgtcaatgc catggtccat accgactata agggagtctt
    12661 gatgattgct gaagactctt caagcttccc taaagtcaca cattctctag aagatggcgg
    12721 tattggattt gatatgaaat gggatctggg ctggatgaat gatacactaa aattcgtgga
    12781 acgccctgct atttatcgaa aatatcactc aaatgaaatc acttttggta tgtactataa
    12841 ccaaaacgag caattcttac taccactttc gcacgacgaa gttgttcatg ggaagcactc
    12901 cattatcgag aagatgaatg gcgactacga agataagttc catctggctc gagtctacta
    12961 cagcttttac tttgcccatc ctggaaagaa attactcttc atgggaaatg aatggggtca
    13021 catccgtgaa tggcacgaat atacagaaat ggactgggga ctgctacaat ttccaatcca
    13081 ccattctttc tatcaaatga tgaaaacatt atctactttc tataaagaac atgatgcttt
    13141 ctggaaatat gactaccaag cctatgaaaa aggatttaat tgggtaaaaa tagatgaaga
    13201 agcaagtctg tatgcttttt ctcgtactag tgatgtgcaa gaaatcttga ctattcataa
    13261 ctttaatgat caagaactat ttgatgtaca cttagatttg ccagctgaca gcgaatataa
    13321 acttgtcttc tcatctaatg ctattccaat ggacacattt agcctctatc ccgatgaaaa
    13381 tggagccaga attactgtac cacgtttgac cagtttttat ctagagcgtg tgaaataatt
    13441 atctgtaaaa aatggagtat tgaaccgacc caaattttct gtctaacttt ttgggtgtag
    13501 ctcacttact ccattctttt ttgcatgcaa aagggagtgg gaaa
//
LOCUS       DASFRC010000052        13219 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.052, whole genome shotgun sequence.
ACCESSION   DASFRC010000052 DASFRC010000000
VERSION     DASFRC010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 13219)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13219)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13219
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.052"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            58..939
                     /locus_tag="U1087_001060"
     CDS             58..939
                     /locus_tag="U1087_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755549.1"
                     /translation="MTLYILANPNAGSHTAEHIIFKIKESYPQLAVNIFMTVGPEDEK
                     RQIEAILKEFVSSEDQLMILGGDGTLSKALRFWPASLPFAYYPTGSGNDFAKAMNITS
                     LYRSVDAILEGKTSRIYVLNSSYGTVVNSMDFGFAAQVINGSTNSILKKILNKVKLGK
                     LTYLFFGIKTLFSKQAINLELTLDEKSYQLDNLFFISVANSLYFGGGIMIWPTASAKK
                     KEVDIVYFKNGNFYQRLQSLLALLTKRHESSHTIQHLTGVDVVLKSKEKLLLQIDGET
                     CTANEVTLTYQERSMYI"
     gene            949..1152
                     /locus_tag="U1087_001061"
     CDS             949..1152
                     /locus_tag="U1087_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF951 family protein"
                     /protein_id="HEM4755550.1"
                     /translation="MYQLGSFVEMKKPHACVIKSTGKKANKWEVIRLGADIKIRCSNC
                     DHVVMMSRHDFERKMKQVLPSEA"
     gene            1256..1615
                     /locus_tag="U1087_001062"
     CDS             1256..1615
                     /locus_tag="U1087_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM4755551.1"
                     /translation="MKQLAQQIKNLRTTKNLSQDELSEKLYISRQAVSKWENGEATPD
                     IDKLVQLAEIFGVSLDYLVLGKEPEKEIVVEQRGKMNVWEYLNEESKRPLTRGDVVLL
                     IFLAVMLLGGLFIQHYF"
     gene            1699..2814
                     /gene="ychF"
                     /locus_tag="U1087_001063"
     CDS             1699..2814
                     /gene="ychF"
                     /locus_tag="U1087_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002269933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HEM4755552.1"
                     /translation="MALTAGIVGLPNVGKSTLFNAITKAGAEAANYPFATIDPNVGMV
                     EVPDERLQKLTELITPKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVH
                     VVRAFDDENVMREQGREDAFVDPIADIDTINLELILADLESINKRYARVEKMARTQKD
                     KDSVAEFAVLEKIKPVLEDGKSARTVDFTDEEQKIVKQLFLLTTKPVLYVANVDEDKV
                     ADPDSINYVQQIRDFAATENAEVVVISARAEEEISELDDEDKGEFLEALGLTESGVDK
                     LTRAAYHLLGLGTYFTAGEKEVRAWTFKRSMKAPQCAGIIHSDFEKGFIRAVTMSYDD
                     LIQYGSEKAVKEAGRLREEGKEYVVQDGDIMEFRFNV"
     gene            2972..3541
                     /locus_tag="U1087_001064"
     CDS             2972..3541
                     /locus_tag="U1087_001064"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000163933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HEM4755553.1"
                     /translation="MTRLIIGLGNPGDRYFETKHNVGFMLLDKIAKRENVIFSHDKIF
                     QADIATTFIDGEKVFLVKPTTFMNESGKAVHALMTYYGLDETDILVAYDDLDMAVGKI
                     RFRQKGSAGGHNGIKSIVKHIGTQEFDRIKIGIGRPKGKMSVVNHVLSGFDTEDRIEI
                     DLALDKLDKAVNFYLEEDDFDTIMRKFNG"
     gene            3541..7035
                     /gene="mfd"
                     /locus_tag="U1087_001065"
     CDS             3541..7035
                     /gene="mfd"
                     /locus_tag="U1087_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HEM4755554.1"
                     /translation="MNILDLLHKNKQINQWQSGLNKLTRQLLLGLTGTSKSLVMATAY
                     DCLAEKIMIVTATQNDAEKLVADLTAIVGSENVYNFFTDDSPIAEFVFASKERAQSRI
                     DSLNFLTDSTSSGILVASMAACRVLLPSPETYKGSKIQLEVGQEIEVDNLVKNLVNTG
                     YKKVSRVLTQGEFSQRGDILDVFDMQADVPYRLEFFGDEIDGIRIFDVDSQKSLENLD
                     SITIAPASDILLTATDYERACSSIETAIEQSHIEEQQSYLREVLADMQTEYRHPDLRK
                     FLSFLYEQSWTLLDYLPKGTPLFLDDFHKIADKQAQFEKESAELLTDDLQKGKSVSSL
                     NYFASTYAELRKYKPATFFSSFQKGLGNVKFDALYQFTQPPMQEFFHQIPLLKDELTR
                     YAKSNNTVVIQASSDVSLQTLQKTLQEYDIHLPVHAADKLVEGQQQVIIGQLASGFHL
                     MDEKLVLITEKEIFNKKIKRKVRRTNISNAERIKDYSELAVGDYVVHHVHGIGQYLGI
                     ETIEISGIHRDYLTVQYQNSDRISIPVEQIDLLSKYLTSDGKAPKVNKLNDGRFQRTK
                     QKVQKQVEDIADDLIKLYAERSQLKGFAFSPDDENQIEFDNYFTHVETDDQLRSIDEI
                     KKDMEKDSPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPTTVLAQQHYANFQ
                     ERFAEFPVNVDVMSRFKTKKEQEKTLEKLKKGQVDIVIGTHRLLSKDVVFADLGLLSI
                     DEEQRFGVKHKERLKELKKKIDVLTLTATPIPRTLQMSMLGIRDLSVIETPPTNRYPV
                     QTYVMETNPSVIRDAMLREIDRGGQVYYLYNKVDTIEQKVSELKELVPEATIGYVHGQ
                     MSEIQLENTLYAFVEGEYDILVTTTIIETGVDIPNANTLFIENADHMGLSTLYQLRGR
                     VGRSSRIAYAYLMYRPDKSLTEVAEKRLEAIKGFTELGSGFKIAMQDLSIRGAGNILG
                     AAQSGFIDSVGYEMYSQLLEQAILEKQGKATQRQKSNSEVNLQIDAYLPSDYIGDQRQ
                     KIEIYKRIKNIDSRVNYQELQEELIDRFGEYPDVVAYLLEIGLLKSFLDQVFCHTVLR
                     RQHQVTVTFEPMAGQIFLTQDYFEALSVTNLKAQITENKGKLAVVFNIQQKKEYEILE
                     ELISFAEKLKEIKARKAE"
     gene            7085..7357
                     /locus_tag="U1087_001066"
     CDS             7085..7357
                     /locus_tag="U1087_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HEM4755555.1"
                     /translation="MRLDKYLKVSRIIKRRTVAKEVADKGRIKVNGILAKSSTDLKVN
                     DQVEIQFGNKLLTVKVLEMKDSTKKEDALKMYEIISEKRIEKDEEI"
     gene            7344..7712
                     /locus_tag="U1087_001067"
     CDS             7344..7712
                     /locus_tag="U1087_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation initiator family protein"
                     /protein_id="HEM4755556.1"
                     /translation="MKKSKILQLNNAFIQSERKKTQYQLAERQQKNRFMGAILILVIF
                     LFMLPAYNLVGTYTNIQQQEKKLAELEKNYEELTKEQKQEAEMVAKLKNEEYAAKYVR
                     AKYQYSKEGEFVYNIPGLPK"
     gene            7835..9115
                     /locus_tag="U1087_001068"
     CDS             7835..9115
                     /locus_tag="U1087_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEM4755557.1"
                     /translation="MQKKLLVWLLPVLFGWQVVDSTEIPFALTAQEEYELTHTIYDQY
                     FQTIPQNPNVFQTENLYSDEELTIAGGQLQPNQRFSITDVLVNSKKELVFQIDDKGYI
                     LASRHLLFDDVIVTETTVEQTYWTKKGFTLLTSPIANEATEIKNDLQPYQAVMVSKIV
                     TTSLGDFAYVTDKGWIAVNNLSKTDNRVEAVQELLTNKYPKDTIGIYVKQLSTGQTAG
                     VNQEKLFYSASIAKLPILYYVQEQLNAGYIDLTTKVKYTAESISFPGAYVAGGSGSLS
                     KTPDNKDYSVEELINKTAKESDNVASNLLSYYVANKFDSNFYQVITAKTGSEWSMVTR
                     ETSAEIAGKMMEALYIQNGYVLESLLSTQFDNQRISKDISVPVAHKIGDADDVKHDVA
                     IVYAESPFVLSIFTDKSNYDEITQIANDIYGILK"
     gene            9116..10384
                     /gene="tilS"
                     /locus_tag="U1087_001069"
     CDS             9116..10384
                     /gene="tilS"
                     /locus_tag="U1087_001069"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HEM4755558.1"
                     /translation="MKDRFLKVTLDGHFFDKHKKVLVAVSGGLDSMNLFHLLYECKQV
                     LGIELGIAHINHGQREESVIEEKYLRQLAEESNVPFYLSYFEGVFSEEAARKWRYGFF
                     ATIMEKEGYTALVTAHHADDQAETVFMRLIRGGRLRHLSAIQPTQPFATGELIRPLLS
                     FKKADFEKLFHFEDCSNADFKYFRNRVRNDYLPKLKQENPKIELTLNNLAVDTNNLFQ
                     ALRDLTQDLSVTDVMSFQQQTPAVQSYLLEEYFEKFPDLQLSRPQFNEVLHILRSKAN
                     YYHLLKNDYMLEKDYHRFQIYKIGPETDSQPEKIMIKSEGIFSYGSYIFSLNHPLEEA
                     DSILYFPTENPIVVRRRQAGDTILINGVNKKLRRWFIDNKISQKVRQNALIIEQNGEI
                     YGITNLVSSDLSKSVKNDIIKATLYIKMKE"
     gene            10392..10934
                     /gene="hpt"
                     /locus_tag="U1087_001070"
     CDS             10392..10934
                     /gene="hpt"
                     /locus_tag="U1087_001070"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HEM4755559.1"
                     /translation="MLDKDIKKILVSEEEIVAKCKELGQILATDYADKNPILVGILKG
                     SIPFMAELMKHIDAHVETDYMVVSSYHGGTESSGTVKIIKDLDNSVAGRHIIFVEDII
                     DTGRTLKELKELFALRQAESIKIATLLDKPEGRVVEIEPDYTCFTIPNEFVVGFGLDY
                     DENYRNLPYVGVLKEEVYTK"
     gene            10956..12929
                     /gene="ftsH"
                     /locus_tag="U1087_001071"
     CDS             10956..12929
                     /gene="ftsH"
                     /locus_tag="U1087_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HEM4755560.1"
                     /translation="MNNQPNKGFIKNPFLIILVIATIVTAFQFFNAGQQVATQEISYS
                     QVVTELKNNNVSEITYQPNSSVIEITGKYKTEQEAKDELASSIKLFQVSSKVKYKNFK
                     SLILPSETNLSELQALANENGVKVTIKPESSNGLWLNIVFNLLPLIIAGVFFMMMMNQ
                     GGGGARGAMNFGRNKAKALEQSNIKVRFSDVAGAEEEKQELVEVVEFLKDPKRFTKLG
                     ARIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFED
                     AKKAAPAIIFIDEIDAVGRQRGVGMGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAAT
                     NRSDVLDPALLRPGRFDRKVLVGRPDVKGREAILKVHAKNKPLAADVDLKLVAQQTPG
                     FVGADLENVLNEAALVAARRNKTVIDASDIDEAEDRVIAGPSKKDRQVSAKEREIVAY
                     HEAGHTIVGLVLSNAREVHKVTIVPRGRAGGYMIALPKEDQMLLSKEDMKEQLAGLMG
                     GRVAEEIIFNTQTTGASNDFEQATQMARAMVAEYGMSEKMGPMQYEGSHAMFAGQTTQ
                     KHISEQTAYELDNEVRDLLNEARNKAAEIIQSNRETHKLIAEALLKYETLDSVQIKSL
                     YETGKMPENIEHDDEDVHPLSYEEVKEKINTKE"
BASE COUNT         4444 a         2222 c         2723 g         3830 t
ORIGIN      
        1 tgttatacta aaaaatagca cctagcttat ttttatatat ttagtgatgg ggaataaatg
       61 acgttatata tattagctaa tcctaatgct ggtagccata ctgctgaaca tatcatattc
      121 aaaataaaag aaagttatcc acagcttgca gttaacattt ttatgacagt tggtcctgag
      181 gatgaaaaaa ggcaaataga ggctatttta aaggagtttg tcagtagtga ggaccaatta
      241 atgattttag gtggagacgg cacactatct aaagctttgc gtttttggcc agctagtcta
      301 ccgtttgctt attatccaac aggatctgga aatgattttg ctaaggcaat gaatataaca
      361 tcgctctata gaagtgtaga tgccatttta gagggaaaaa caagtcggat atatgtttta
      421 aacagttcat acggaacggt tgtaaacagt atggattttg gctttgcagc tcaagttatc
      481 aatggttcaa cgaattcaat tttgaaaaaa attctgaaca aggtaaaact tgggaagtta
      541 acttatctat tctttggtat taaaacatta ttttcaaaac aagctataaa cttagaatta
      601 actcttgatg aaaaatctta tcagttagat aatctctttt ttatttctgt agcaaatagt
      661 ctttattttg gtggaggaat catgatatgg ccaacagcaa gtgctaaaaa gaaggaagta
      721 gatattgttt acttcaaaaa tggaaatttc taccaacgtc tacaatcatt gttagcctta
      781 ttaacgaaga ggcatgaatc ttctcataca attcagcatt taacaggggt agatgtagtt
      841 ttaaaatcaa aagaaaaatt gttattgcaa atagatggag agacatgcac tgcaaatgag
      901 gtaacgttaa cctatcagga aagaagtatg tatatttaag gaggaagtat gtatcaatta
      961 ggatcatttg tcgaaatgaa aaagccccat gcctgtgtca tcaaatcgac cggcaagaag
     1021 gccaataaat gggaagtcat ccgtctagga gcggatatta aaatccgctg cagtaactgt
     1081 gaccatgttg ttatgatgag ccggcatgat tttgaacgaa aaatgaaaca agttctgccg
     1141 agcgaagcct agttgacagt ttgcaactgc tggttgcgag tttttcctaa aaattgctag
     1201 tcaactgctc ctttctaagc tataatagac ttagaaaaaa gaggaggaca agaccatgaa
     1261 gcagttagca cagcaaatca agaatctacg cacaaccaag aacctatctc aagatgagtt
     1321 gtcagagaaa ctctatattt cccgtcaggc tgtttccaag tgggaaaatg gcgaagcaac
     1381 gccagatatt gacaaactgg tccagctagc agaaatcttt ggtgttagtc tggattatct
     1441 ggttttagga aaagagcctg agaaggaaat tgtggtggaa caacgaggaa aaatgaatgt
     1501 ttgggaatac ttgaacgaag aatccaaacg acctcttaca agaggagatg ttgtccttct
     1561 catttttctt gcagttatgc ttttaggtgg attatttatt cagcattatt tttaacgaag
     1621 cttgccaaac agcaagcttt ttctctactt ttctgctata atagtcatga ttgaattttt
     1681 aattggagag taaaaaaaat ggctttaaca gcaggaatcg tcggtttgcc aaacgttggt
     1741 aaatcaaccc tatttaacgc aattaccaag gcaggagcag aggcagccaa ctaccctttc
     1801 gcaactattg atccaaacgt tggtatggtg gaagtgcccg atgagcgttt gcagaagttg
     1861 acagaactca tcactcctaa aaagacagtt ccaaccactt ttgaatttac cgatattgcc
     1921 ggtatcgtaa aaggtgcttc taaaggtgaa ggacttggaa ataaattctt ggccaatatc
     1981 cgcgaagtgg atgctattgt ccacgtggtg cgtgcctttg acgatgaaaa tgtcatgcgt
     2041 gaacaaggtc gtgaagacgc ttttgtggat ccaatcgcag atattgatac tattaaccta
     2101 gaattgattt tggcggacct agagagcatc aacaagcgtt atgcgcgtgt agaaaaaatg
     2161 gcacgtacgc aaaaagacaa ggattctgta gcagaatttg cagtccttga aaaaatcaaa
     2221 cctgtcttgg aagacggaaa atctgcccgt acggttgact tcacagatga agaacaaaaa
     2281 atcgttaagc aactcttcct tttgacgacc aagccagtcc tctatgttgc caatgtcgat
     2341 gaagataagg tagcagatcc tgattctatc aactatgtgc agcaaatccg tgattttgcg
     2401 gcaacagaaa atgcagaagt ggtggtgatc tctgcgcgtg cagaagagga aatttcagaa
     2461 ctcgacgatg aagacaaggg cgagttttta gaagcactcg gattaacaga atctggtgtg
     2521 gacaaattaa cacgtgcagc ctaccattta cttggactag ggacctactt tacagcaggg
     2581 gaaaaagagg tgcgtgcttg gacctttaag cgtagcatga aagctcctca atgtgctggg
     2641 atcatccact cagacttcga gaaaggcttt atccgtgccg taaccatgtc ctatgatgat
     2701 ttgattcaat acggctctga gaaggctgtt aaagaagcag gacgccttcg tgaagaagga
     2761 aaagagtatg tggttcaaga tggggacatc atggagttcc gctttaacgt ttgatggcta
     2821 aactgtcctt attcttcgtt gttttacctt gccataccat cagtattgtc tgcggtttca
     2881 acgcctagac taagaacagt ttatcgcatc aaagaggatg attacttggt tggaaagcat
     2941 tttccagcct tttggtattt aaggagaaaa aatgacacga ttgatcatcg gtctgggaaa
     3001 tcccggagac cgttattttg aaacaaaaca caacgttggc tttatgttgc tggataagat
     3061 tgccaagcgt gaaaatgtaa tttttagtca cgataaaatt tttcaggcgg atattgcaac
     3121 cacctttatt gacggtgaaa aagtcttcct agttaaacca accaccttta tgaatgagtc
     3181 aggtaaggct gttcatgccc tgatgaccta ctatggtttg gatgagacag atattctggt
     3241 agcttacgac gacttggaca tggctgttgg gaagatccgt ttccgtcaaa aaggctccgc
     3301 aggtggccac aatgggatta aatctattgt caagcatatt ggaacacaag aatttgaccg
     3361 cattaaaatc ggcatcggcc gtccaaaagg aaaaatgagt gttgtcaacc acgtcttatc
     3421 aggatttgac acagaagacc gtattgaaat cgacttagca ctagataaac ttgacaaggc
     3481 tgtcaacttc tatttggaag aagatgattt tgatactatt atgagaaagt ttaacggata
     3541 atgaatatac tcgatttact tcacaagaac aagcaaatca atcagtggca gtctggctta
     3601 aacaagttaa ctcgccaact attattagga ctcactggaa ccagtaagtc attagttatg
     3661 gcgactgcct atgattgttt ggccgaaaag attatgattg tgactgctac tcaaaatgat
     3721 gctgagaaat tagttgcaga tttaacagcc atcgttggaa gtgagaatgt ttacaacttt
     3781 tttacagatg atagtccaat tgcggaattt gtctttgcat caaaagaacg ggctcaatca
     3841 aggattgaca gtttaaattt cttgacagat tctactagtt caggaatttt ggttgctagt
     3901 atggctgctt gtcgggtctt attgccgagt cctgagactt ataaaggttc taaaatacag
     3961 cttgaagttg gtcaagaaat agaagttgac aatcttgtaa agaatcttgt caacacaggc
     4021 tacaaaaaag tgtctcgtgt attaacccag ggagaattta gccaacgagg tgacatccta
     4081 gatgtttttg atatgcaagc tgatgtccct tatcgtttgg aattttttgg agatgagatt
     4141 gatggcattc gtatctttga tgtcgacagt caaaagtctt tagaaaattt ggatagcatc
     4201 accattgctc cagcatcgga tattcttttg acagctactg actatgaacg ggcctgcagt
     4261 agtattgaaa cagctattga acaatcacat atagaagaac agcagtctta tttacgggaa
     4321 gttttggcgg atatgcaaac agaatatcgt catcccgatt tacgaaaatt tctatcattt
     4381 ttatatgaac aatcttggac attgctagat tatttgccaa agggaacccc tttattttta
     4441 gatgattttc ataaaatcgc tgataagcag gctcaatttg aaaaagaatc agcagagttg
     4501 ttgacagatg atttacagaa gggtaaatca gtatcaagtt taaactattt tgcctcaact
     4561 tacgctgaat tgagaaaata caaacctgcc accttctttt caagttttca aaaaggttta
     4621 ggcaatgtaa agtttgatgc tctttatcaa tttactcaac ctcctatgca ggaatttttc
     4681 caccagattc cactgttaaa agatgaattg actcgatatg cgaaatcaaa caataccgtt
     4741 gttattcaag cgagttctga tgtgagttta cagactttac agaaaacttt acaagagtat
     4801 gatatccatc ttccagtaca tgcagcagat aagttagtag aaggtcagca acaagtgatc
     4861 attggacagc tagcttctgg atttcatttg atggatgaga agttagttct tattactgaa
     4921 aaagagattt ttaataaaaa gattaagcgt aaggtccgta gaactaatat ttctaatgct
     4981 gagcgtatta aggactatag tgagctagct gttggtgact atgttgttca ccatgttcat
     5041 ggtatcggtc aatacttagg aattgagact attgaaattt caggcattca tcgtgattat
     5101 ttaacggttc aatatcaaaa ctccgatcgc atttctattc ctgtagaaca aattgatctt
     5161 ctctccaaat acttaacgtc cgatggaaaa gctccaaaag ttaataaatt aaacgatggc
     5221 cggttccaac gaaccaagca aaaagttcag aagcaagtgg aggatattgc agatgatttg
     5281 attaagcttt atgcggagcg tagtcagctg aaaggttttg ccttttcacc agatgatgag
     5341 aatcagattg agtttgacaa ctactttaca catgtggaaa ccgacgacca acttcgttcc
     5401 attgatgaaa ttaagaagga catggaaaaa gactctccaa tggatcgtct attggtaggt
     5461 gatgtcggtt tcggtaagac agaggtagcc atgcgagctg cctttaaggc tgtcaatgat
     5521 ggaaaacagg tagctattct tgtacctacg actgttttag cccagcaaca ctatgctaat
     5581 ttccaagaac gatttgctga atttcctgta aatgtggatg tgatgagtcg ctttaaaaca
     5641 aaaaaagagc aggaaaaaac gcttgaaaag ttaaaaaaag gtcaagttga catcgtcatt
     5701 ggtacccatc gccttctatc aaaagatgtt gtttttgctg atttaggttt actgagtatt
     5761 gacgaagagc aacggtttgg tgtcaagcat aaggaacgct tgaaggaact gaaaaagaaa
     5821 atagatgtcc taaccttgac tgcaactccg attcctcgga cattgcaaat gtccatgctg
     5881 ggaatccgtg acttatcagt aattgagact ccaccgacaa atcgctatcc tgttcaaacc
     5941 tatgtcatgg aaacaaatcc ttccgttatc cgagatgcaa tgcttcgaga gatagatcgc
     6001 ggaggtcagg tttactatct ttacaataaa gttgacacca ttgaacagaa agtgtctgaa
     6061 ttaaaagaat tggttccaga agctactata ggatacgtcc atggacaaat gtcggagatc
     6121 caattagaaa atactctcta tgcttttgta gagggtgagt atgatattct agtgaccaca
     6181 acaatcattg aaacaggtgt tgatattcca aatgctaata cactgtttat tgaaaatgca
     6241 gatcatatgg gactgtcaac tctttatcaa cttagaggac gtgttggccg ttccagtcgg
     6301 attgcctatg cctatctcat gtaccgtcca gacaagtcct tgacagaagt agctgaaaaa
     6361 cgcttggaag ccattaaggg ctttacagaa ctaggatcag gtttcaagat tgccatgcaa
     6421 gatttgtcca ttcgtggtgc gggaaatatt ttaggtgctg ctcagtcagg ttttattgat
     6481 tctgtgggat atgagatgta ttcacaattg ctggaacaag ccatcttgga aaaacaaggt
     6541 aaggcaaccc aacgtcagaa gagtaattca gaggtcaatt tacagattga tgcctattta
     6601 ccaagtgatt atattggtga tcagcgacaa aaaatcgaaa tttacaagcg tataaagaat
     6661 attgacagtc gtgtcaacta tcaagaatta caggaagaat tgattgaccg ttttggagag
     6721 tatcctgatg tagtagccta cttgcttgaa atcggtctat tgaagtcatt tttagaccaa
     6781 gttttctgtc atacagttct tagacgacaa catcaagtga cagtaacatt cgaacctatg
     6841 gctggtcaaa ttttcctaac gcaagattac tttgaagctt tatctgtgac aaatttgaaa
     6901 gctcagataa cggaaaataa aggaaaacta gctgttgtgt ttaacattca acagaaaaaa
     6961 gaatatgaaa tattagagga attaatttct tttgccgaaa aattaaaaga aattaaagca
     7021 aggaaggcag aataaatttc tcaaatacct tgaaaaatgg taaaataatg aactgaggta
     7081 aagtatgaga ctagataaat atttgaaagt atcccgcatt atcaagcgtc gaacagttgc
     7141 gaaggaagtt gccgataaag gacgaataaa agtcaatggg attttggcga aatcttcaac
     7201 agatttaaaa gtaaatgatc aggttgaaat ccaatttggt aataaactac tcactgtaaa
     7261 agtacttgaa atgaaagatt cgactaaaaa agaagacgca ctgaaaatgt atgaaattat
     7321 cagtgaaaaa aggatagaaa aagatgaaga aatctaaaat tctacaactg aataatgcct
     7381 ttattcagtc ggagcgtaaa aaaactcagt atcaattggc agaacgccaa caaaaaaatc
     7441 gttttatggg tgcgattctc attctagtta tctttctttt tatgttgcct gcctataatc
     7501 ttgttgggac ttacactaat attcagcagc aggaaaagaa gcttgctgaa ttggaaaaaa
     7561 attacgaaga actgaccaaa gaacagaagc aggaagcaga gatggttgca aaattgaaaa
     7621 atgaggaata cgcagcaaag tatgttcggg ctaagtatca atactctaaa gaaggggaat
     7681 ttgtctacaa tattccaggg ttaccaaaat gaccgaatct atttttaaaa ttgtagagca
     7741 atttttacag cattctgatg aaaaattaga agagttgaat caaaagaata gagaattaaa
     7801 gttagaagaa aatgaatcgt agaaaggagg gagtatgcag aaaaaactgc tcgtatggtt
     7861 attgccagtt ttgtttggat ggcaggtggt cgatagtaca gaaataccat ttgcactcac
     7921 agcgcaagaa gaatacgaat tgactcatac tatctatgat cagtattttc aaactatccc
     7981 tcaaaaccca aatgtttttc aaactgagaa tctttattcg gatgaagaac tgactatagc
     8041 aggtggacaa ttacagccga accaacgttt ttctattacg gatgttctag tcaatagcaa
     8101 aaaagaattg gttttccaaa tagatgacaa gggttacatt cttgcaagta gacatctact
     8161 atttgatgat gtaattgtta cagaaactac tgttgagcaa acttattgga caaaaaaagg
     8221 tttcacattg ttaacctcac caattgctaa cgaagctacg gaaataaaaa atgatttaca
     8281 accctatcaa gctgttatgg tttctaaaat cgtaacaact tccctaggtg attttgccta
     8341 tgttacagat aaaggttgga ttgcagtaaa taatctttct aaaacggata atagagtaga
     8401 agctgttcaa gagttgttga ctaacaaata tcccaaagat actattggta tatatgtgaa
     8461 acaattgtca acaggtcaaa ctgcaggtgt aaatcaagag aaactattct attctgccag
     8521 cattgctaag ctaccaattc tttattacgt tcaagagcaa ctgaatgctg ggtacattga
     8581 tttgactact aaagtgaaat atacagccga atctatatcc ttcccaggag cttatgttgc
     8641 tggaggaagt ggttcactgt caaaaactcc tgacaataaa gattattcag tggaagaatt
     8701 gatcaataag actgctaaag agtcagataa tgtagctagt aatttacttt cttattatgt
     8761 agctaataaa ttcgattcca atttttatca agtaataact gctaaaacag gtagtgagtg
     8821 gagtatggtt acacgtgaaa cttcagctga gatcgcaggt aaaatgatgg aagccttata
     8881 tattcaaaat ggctatgtgc tagaaagttt gttatctact caatttgata atcaacgtat
     8941 ttcgaaagac atctcagttc cagttgctca taaaattggc gatgcagatg atgtcaaaca
     9001 cgatgtagcg attgtttacg cagagtctcc ttttgtttta tctattttta cagataaatc
     9061 aaattatgat gagattacac aaattgcaaa tgatatttac gggattttaa agtaaatgaa
     9121 agatagattt ttaaaagtga cactggatgg tcactttttt gataaacata agaaagtact
     9181 agtagccgta tctggtgggt tagattctat gaacctattc catcttttat acgaatgcaa
     9241 acaagtgcta gggattgaac ttggaattgc ccatattaat catggacaga gggaagaatc
     9301 tgtcattgag gaaaaatatc ttagacagtt agcagaagaa agtaatgttc ccttttatct
     9361 gtcctatttt gaaggtgttt tttcagaaga agcggcgcga aaatggcgtt atggattttt
     9421 tgctacaatc atggagaagg aaggctacac tgcactagtg acagcccacc atgcagatga
     9481 tcaagcagaa actgtcttta tgcgattgat tagaggaggg cgtttacgtc acttatcagc
     9541 aattcaaccg actcagcctt ttgcaacagg ggaacttatt cgaccacttt tatcttttaa
     9601 aaaggcagat tttgaaaagc tatttcattt tgaagattgc agcaatgcag atttcaaata
     9661 ttttcgaaat agagtcagaa atgactattt accaaagtta aaacaggaaa atcctaaaat
     9721 cgaacttact ctcaataatc ttgcagttga tacaaataat ctatttcaag cgctaagaga
     9781 tttgacacag gatttatccg ttacagatgt gatgagtttt caacaacaga cacctgcggt
     9841 acaaagttat ctattagagg aatattttga aaaatttcct gatttacagc tctctcgtcc
     9901 acaatttaat gaagtattac acatcttgcg ttcaaaagct aactactatc atttattgaa
     9961 aaatgattat atgctagaaa aggattatca tcgttttcaa atttataaaa taggaccaga
    10021 gacggatagt caaccagaaa aaatcatgat aaaatcagag ggtatttttt cttacggttc
    10081 atatattttt tctctcaatc atcctttgga agaagcggat agtattttat attttcctac
    10141 agaaaatcca attgtagtga ggagaaggca ggctggggat accattttaa taaacggagt
    10201 aaataaaaaa ctccgtcgtt ggtttattga taataaaatc tcacagaaag ttcgacaaaa
    10261 tgcgcttatt atcgagcaga atggagaaat ttatggaatt acgaatcttg ttagcagtga
    10321 tttgagtaaa tcagtaaaaa atgatataat aaaagctacc ttatatataa aaatgaaaga
    10381 gtagaacaac tatgttggac aaagatatta agaaaattct tgtttcagaa gaagaaatcg
    10441 ttgcaaaatg caaagaactc ggtcaaattt tagcaacaga ctatgcagat aagaatccta
    10501 ttcttgtagg aattttaaaa ggttctatcc catttatggc agaattaatg aaacatattg
    10561 atgcccatgt agaaacggat tatatggttg tttctagcta ccatggcgga acggagagta
    10621 gcggtaccgt taagattatc aaggatttgg acaatagtgt tgcaggtcga catatcatct
    10681 tcgtagagga tattattgac actggtcgta cattaaaaga actaaaagag ctgtttgctc
    10741 tccgtcaagc tgaatctatc aaaattgcta cactccttga taaaccagaa ggtcgagttg
    10801 ttgagattga gccagactat acttgtttca ctattccaaa tgaatttgta gttggatttg
    10861 gattagacta tgatgaaaac taccgtaatc ttccttatgt tggtgtacta aaagaggaag
    10921 tttatacaaa atagaaaaag gtttcctact atattatgaa caatcaacca aataaaggat
    10981 ttattaaaaa tccttttctc attattctcg ttattgccac tattgttaca gcctttcaat
    11041 tttttaacgc tggtcagcaa gtagcaactc aagaaatcag ttattcacaa gtagtaactg
    11101 aattgaaaaa taataatgta tctgaaatta cttatcaacc aaattcaagt gttattgaaa
    11161 ttactggtaa gtacaaaaca gaacaggaag ctaaagatga gttagcttca tctattaagt
    11221 tattccaagt ttctagcaaa gttaagtata aaaactttaa gtcactaatt ttaccgtcag
    11281 aaacgaattt gtcagagcta caagcacttg caaatgaaaa tggagtaaag gttactatta
    11341 aacctgaaag ttcaaatgga ctttggttaa atatcgtctt taatttgtta ccgctcatca
    11401 ttgctggtgt attcttcatg atgatgatga accagggtgg tggcggagct cgaggtgcca
    11461 tgaactttgg gcgaaacaag gcaaaagctc ttgagcaaag caatattaag gttcgtttct
    11521 cagatgtcgc aggtgcagaa gaagaaaaac aagaattggt agaagtggta gaatttttga
    11581 aagatcctaa acgctttacc aaacttggtg cccggattcc ggcaggtgtc ttgttggagg
    11641 gacctccagg aacaggtaaa actttgcttg ccaaagcagt agcgggtgaa gcgggtgtac
    11701 cattcttctc catttctggt tcagattttg ttgagatgtt tgttggtgtc ggtgccagcc
    11761 gtgttcgttc attatttgaa gatgcaaaaa aagcagcacc agccattatt ttcatcgatg
    11821 aaatcgatgc tgtcggtcgc caacgtggtg tcggcatggg tggcggtaac gacgaacgtg
    11881 aacaaaccct caaccaactc ttgattgaaa tggatggttt tgaaggtaat gaaggtatta
    11941 tcgtcattgc tgcaaccaac cgtagtgatg ttctcgatcc agcccttctt cgtccaggtc
    12001 gttttgaccg taaagtattg gttggtcgtc cggatgttaa aggacgtgaa gcaatcctta
    12061 aagttcatgc gaagaataaa ccactagcag cagatgtaga tttgaaatta gtagcacaac
    12121 aaacaccagg atttgttggt gcagatttag agaatgttct taacgaagca gcccttgtag
    12181 ctgcacgtcg aaacaagact gtcattgatg cttcagatat tgacgaagca gaagatcgtg
    12241 ttattgcagg tccatctaag aaagaccgtc aagtttcagc caaagaacgc gaaatcgttg
    12301 cctaccatga agcaggtcat acaattgttg gtctcgtact atcaaatgca cgtgaagttc
    12361 acaaagtaac aattgttccc cgcggtcgcg caggtggata catgattgcc cttcctaaag
    12421 aagatcaaat gcttctttct aaagaagata tgaaggagca attggctggg cttatgggtg
    12481 gtcgtgtagc agaagaaatt atctttaata ctcaaaccac aggtgcctca aatgactttg
    12541 agcaagctac acagatggcg cgtgctatgg ttgcagaata tggtatgagt gaaaaaatgg
    12601 gaccaatgca gtatgaaggc agtcatgcaa tgtttgctgg acaaacaact caaaaacata
    12661 tttctgagca aactgcatat gagttagata atgaagtacg tgatttgtta aatgaagccc
    12721 gcaacaaagc ggctgaaatt attcagtcta atcgcgaaac tcataaacta atcgcagaag
    12781 cattgctcaa atacgaaacc ctagacagtg ttcagattaa atctctctat gaaacaggca
    12841 aaatgccaga gaatattgaa catgatgatg aagatgttca tcccctttct tatgaagagg
    12901 taaaagagaa aattaatacg aaagagtagt ataaaaatac tctgggcaag acattccata
    12961 acggatctgt cttcactctc aaccactaaa ataactacaa agccttcgct aagtacataa
    13021 tcttggcgag ggctttttta caaaacaggg catttacaag aaaaacgaat caatagttat
    13081 ttatctcaat cttagaacta taccaaataa ctcccttctg aagcagaatg caatgtttgc
    13141 catagagtat caatagcaaa tgtactttaa aaaagaaaaa tcaaataaag tatgctagac
    13201 aaaaatgtcc tgtagaaag
//
LOCUS       DASFRC010000053        12833 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.053, whole genome shotgun sequence.
ACCESSION   DASFRC010000053 DASFRC010000000
VERSION     DASFRC010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 12833)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12833)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12833
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.053"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(105..2606)
                     /locus_tag="U1087_001072"
     CDS             complement(105..2606)
                     /locus_tag="U1087_001072"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014639013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HEM4755561.1"
                     /translation="MSFYNHKEIEPKWQGFWAKNHTFKTGTDAAKPNFYALDMFPYPS
                     GAGLHVGHPEGYTATDILSRYKRAQGYNVLHPMGWDAFGLPAEQYAMDTGNDPADFTA
                     ENIANFKRQINALGFSYDWDREVNTTDPNYYKWTQWIFTKLYEKGLAYEAEVPVNWVE
                     ELGTAIANEEVLPDGTSERGGYPVVRKPMRQWMLKITAYAERLLNDLEEVDWPESIKD
                     MQRNWIGKSTGANVTFKIKDTDKDFTVFTTRPDTLFGATYAVLAPEHDLVDSITSPEQ
                     TEAVAEYKRQASLKSDLARTDLAKDKTGVWTGAYAINPVNGKEIPIWIADYVLASYGT
                     GAIMAVPAHDERDWEFAKQFGLDIIPVLEGGNVEEAPYTEDGAHINSDFLDGLNKEEA
                     IAKMVAWLEENGVGQEKISYRLRDWLFSRQRYWGEPIPIIHWEDGTSTAVPENELPLV
                     LPKTSDIKPSGTGESPLANLTDWLEVVREDGVKGRRETNTMPQWAGSSWYYLRYIDPH
                     NDEKLADEDLLKAWLPVDIYIGGAEHAVLHLLYARFWHKFLYDLGVVPTKEPFQKLFN
                     QGMILGTSYRDSRGALVATDKVEKRDGSFFNIETGEELEQAPAKMSKSLKNVVNPDDV
                     VEQFGADTLRVYEMFMGPLDASIAWSEEGLEGSRKFLDRVYRLLTTKELAAENSGALD
                     KVYNETVKTVTEHIEDLKFNTAIAQLMIFVNAANKEDKLYVEYAKGFVQLIAPFAPHL
                     AEELWQGLTNTGQSISYVAWPTYDESKLVESEVEIVVQIKGKVKARLTVAKDLAPAEL
                     EKVALADEKVQAEIAGQTVVKVITVPNKLVNIVTK"
     gene            complement(2709..4601)
                     /locus_tag="U1087_001073"
     CDS             complement(2709..4601)
                     /locus_tag="U1087_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010922744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase"
                     /protein_id="HEM4755562.1"
                     /translation="MTRLQDDFYEYVNGEWAKTAVIPDDKPRTGGFSDLADEIEKLMI
                     DTTNAWLAGEDVPEDSVLQNFVAFHKQVADYETRDRLGAEPAQALIAEYKALNSFEEF
                     TSKLAEYELAGKPNLMPFGVAPDFMDATTNVLWADSLGIILPDTTYYEEGHEKGAELL
                     KIWRESQEALLPKFGFSDEEIKDLLDKRLELDATIAKYVLSNEEGSEYAKLYHPYEWA
                     DFTALAPELPLDDFFTAILGQTPDKIIVPEERFWQAAKDIYSADNWELLKATLILKAA
                     GAYTAFLSDEIRILAGAYSRALSGTPQAQNQEKAAYNLAQGYFNQALGLWYAGEKFSP
                     EAKADVEAKVAKMIEVYKSRLETADWLAQETRDKAIVKLNVIKPYIGYPEALPERYYK
                     KIVDPSKSLVENAIELNKIDIAHGWSKWNKPVDIKEWGMPAHMVNAYYNPQKNLIVFP
                     AAILQAPFYSLEQSSSANYGGIGAVIAHEISHAFDSNGASFDEHGSLNNWWTEEDYAA
                     FEARTQQVIDQFEGQDSYGAKINGKLTVSENIADLGGIAAALEAAKSEDDFSAEEFFT
                     NFARIWRMKARPEFMQMLASVDVHAPGHLRTNIQLPNFDEFHETFGVQEGDGMWRAKE
                     DRVIIW"
     gene            complement(4657..5496)
                     /locus_tag="U1087_001074"
     CDS             complement(4657..5496)
                     /locus_tag="U1087_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEM4755563.1"
                     /translation="MFEVLLILMVIASSCGLLGSILVVKNQSMLADALSHSVLLGIVL
                     GFFISHSLDSPLLIVGASLFGLLSVLAIDRLHSRKIAHDAATGLVFSFFFAVAVLLIS
                     LFARNVHLDVDLVLQGEVLFAPLHRMDVLAWSLPVSLVKSSLAWLVIVLFFAWAYHRL
                     QVYLFDSNHARLSGLRTRILEMVILILVSLTTVLAFEAIGSMTVIVFLVAPSMAALRW
                     VKSFWQLLLLGQGIAILTVVLGFLVANQLDLTMSGTCAVVSLLVVCSSIILKNTWSRS
                     SDK"
     gene            complement(5489..6349)
                     /locus_tag="U1087_001075"
     CDS             complement(5489..6349)
                     /locus_tag="U1087_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEM4755564.1"
                     /translation="MFEVFKEYSFWTVALGTVSLAVAASTIGSISVLTKQSLLGDALG
                     HASYPGVIVSFMIFQSRHPLYLLLGAVLSGYLSYVLVHWLRRKGGHSLVNALSLVSAS
                     FFGLGMVLKNAIQGNEAFAGSSQAGLQTYLFGQAAFIQLDDVILIGIISLLALALFTF
                     FYQDYKLYLFDQTFARVIGVRVKYLQQLTMFLMICLIAVGLKLVGAILMSSFLIAPAV
                     FGLMLGKSYHKSLLLAGIVAIGSAFVGTWISSSVSGLSTGPTIIVCLTGLTLSAFVYV
                     TYVRKENGRV"
     gene            complement(6342..7112)
                     /locus_tag="U1087_001076"
     CDS             complement(6342..7112)
                     /locus_tag="U1087_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HEM4755565.1"
                     /translation="MSAIIELKDVNLAYTASQTMALEDVNLVIPRGSRTAIVGPNGAG
                     KSSLFKVILGLEKPDTGQVRLLGQEAGLERLIAQKVAYIPQSSQVNWQFPATVFEIVL
                     MGRFAHSKGMFRRPTKADRQIVEQALERLKIADLRHRQIDQLSGGQRQRVFLARALAQ
                     EAELYLMDEPLAGIDQATEIMIMDMLKEFQCEGKTSIVIHHDLTTLDAYFDHLVWLHK
                     HVIDSGPMDETLTSENYQATYGIGNGLFLGNAKGGSHV"
     gene            7099..7425
                     /locus_tag="U1087_001077"
     CDS             7099..7425
                     /locus_tag="U1087_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755566.1"
                     /translation="MIADIFPPIFKNDMPHSYSMKIKTRPTYQAEKVDKIKIPYQQIA
                     GKPYTSLISTHQYMNLIFAEHQGFLQSYVYKSVKNGPKTERTRPRPSPFYYSFEIPIH
                     AQTTDI"
     gene            complement(7666..8589)
                     /locus_tag="U1087_001078"
     CDS             complement(7666..8589)
                     /locus_tag="U1087_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEM4755567.1"
                     /translation="MKKILFSFALLLSLIGLGACRPSQTTEGSSKPRVAVTTSFLNDM
                     VYQLAGDEVERDLLIPAGEDPHLYVAKSSDLSKLQKADLVLYHGLHFEGKMVEALEKT
                     GVAVSKNFNAKDLNTMDEDGEEIVDPHFWFSIPLYKSAVAVASEELQKLLPAKAEMIQ
                     KNAEKYQAQLDDLHAWVEKELSVIPKESRYLVTPHDAFNYFAASYDFTLYAPQGVSTD
                     SEVANSDMIETVNLIIDHNIKAIFTESTTNPERMKKLQEAVKAKGGQVEVVTGEGKEL
                     FSDSLAPEGEEGDTFIDMYKHNVKLMVKYLK"
     gene            8715..9374
                     /locus_tag="U1087_001079"
     CDS             8715..9374
                     /locus_tag="U1087_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent transcriptional regulator"
                     /protein_id="HEM4755568.1"
                     /translation="MTPNKEDYLKCIYELGQLDQKITNKLIAEKMAFSAPAVSEMLKK
                     MVAEELISKDAKAGYLLSQTALEMVASLYRKHRLIEVFLVEQLGYSPEEVHEEAEILE
                     HTVSDHFINRLDLLLEQPQTCPHGGSIPQAGQPLIERYQTRLSQLTETGNYQLVRIHD
                     FYQLLQYLEQHELAVGDLLTVTAFDQFAQTITIQYKDKELAVPTAIAQQLFIEKSNRP
                     A"
     gene            complement(9421..9684)
                     /locus_tag="U1087_001080"
     CDS             complement(9421..9684)
                     /locus_tag="U1087_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755569.1"
                     /translation="MRKFFQDLNQEYLETRSSVGEDWLEWIIQRKMTWGMRWGLVGIL
                     MFVLQPLTYNPHFLLGCFYIGFLLWLVYVCGQLFLQPDLFSVI"
     gene            complement(9790..9975)
                     /locus_tag="U1087_001081"
     CDS             complement(9790..9975)
                     /locus_tag="U1087_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755570.1"
                     /translation="MKKLLTNHFFYLTIAFLLILVIYFSGIDKRWIILASFLYFIPSQ
                     ILYRRRLRERLQEDQPE"
     gene            complement(10051..10494)
                     /locus_tag="U1087_001082"
     CDS             complement(10051..10494)
                     /locus_tag="U1087_001082"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000691442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HEM4755571.1"
                     /translation="MKIVLQRVSQASVTIEGSIHGQIEQGLLLLVGVGPDDTQEDLDY
                     AVRKIVNMRIFSDEAGKMNKSVQDVAGKILSISQFTLFSDTQKGNRPAFTGAAAPALA
                     SQLYDAFNQALSAFVPVEVGVFGADMAVSLVNDGPVTIVLDTKNK"
     gene            complement(10496..12697)
                     /locus_tag="U1087_001083"
     CDS             complement(10496..12697)
                     /locus_tag="U1087_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HEM4755572.1"
                     /translation="MKEINFTGEEVVGLTATYLPAEDVAFVQKALDFATEAHKLQFRK
                     SGEPYIVHPIQVAGILAGLKLDAVTVACGFLHDVVEDTDVTLDDMEAEFGPEVRHIVG
                     GVTKLGKVEYKSHEEQLAENHRNMLIAMSQDMRVILVKLADRLHNMRTLKHLRKDKQE
                     RISRETMEIYAPLAHRLGISSIKWELEDMSFRYLNEVEFYKITRMMNEKRREREELVN
                     EVVDKLRDYTEERHLHGQIYGRPKHIYSIYRKMHDKKKRFDQLYDLIAIRCIMDTPSD
                     VYAMLGYIHELWKPMPGRFKDYIANQKANGYQSIHTTVYGPRGPIEFQIRTMEMHQVA
                     EYGVAAHWAYKRGGKATASEKELRWINNLIELQEGAGDAQTFVNSVKDDIFTERIYVF
                     TPDGAVRELPKDSVPIDFAYEIHTKVGERATGAKVNGRMVPLTTKLKTGDQVEIITSA
                     NSFGPSRDWVNLVKTHKARNKIKQFFKNQDKELSVSKGREMLQNLLQENGYVPNQYLD
                     RRHMDEVLQKTSYKTDESLFAAVGFGEVSAISIFNRLTEKERREAERAKAKAVADELV
                     NGGEVKHDNKDSLKIRHEGGVVIEGASGLLIRIAKCCNPVPGDEIVGYITKGRGVAVH
                     RVDCMNLKSQENYDVRLIDVDWEDENSTKEYMANIDIYGLNRSGLLNDVLKVLTNASK
                     NISSVNAQPTKDMKFATIHVSFGISNLATLTSLVDKIKSVPEVYSVKRTNG"
BASE COUNT         3615 a         3181 c         2579 g         3458 t
ORIGIN      
        1 ttatttacat ttatttcaca acaatattaa caagtttagt tggctccaac agtctgcgga
       61 tagactgttg gaggttggaa atagacaaac aaacgaggca atcgttactt ggtaacgata
      121 ttgacaagtt tgtttggaac cgtaatcacc ttcaccactg tctgcccagc aatttcagct
      181 tggacttttt cgtccgcaag ggcaactttt tcaagctctg ctggtgctag gtctttggct
      241 acggtcaagc gggcttttac cttgcccttg atttggacaa cgatttccac ttcgctttct
      301 accagcttgc tttcgtcata tgttggccat gcgacatagc tgattgactg acctgtattt
      361 gtcagacctt gccagagttc ttctgccaag tgtggcgcaa atggggcaat caattggaca
      421 aagcctttgg cgtattcgac atagagcttg tcttctttgt tggctgcgtt gacaaaaatc
      481 atgagctggg cgatagccgt gttgaatttc aggtcttcaa tatgctctgt caccgtcttc
      541 acagtttcat tgtaaacttt atcaagcgct ccgctatttt ccgccgcaag ctccttggtc
      601 gtcaagaggc gataaacacg gtcaaggaac ttacggctgc cctcgagacc ttcttctgac
      661 caggcgattg acgcatcaag tgggcccatg aacatctcgt aaacacggag ggtatccgca
      721 ccgaactgct cgaccacatc gtctggattg accacgtttt taagggactt ggacatctta
      781 gcaggtgcct gctccaactc ctcaccagtt tcgatgttga agaaagaacc atcacgtttt
      841 tcaactttat ctgtcgcaac aagggcacca cggctgtcac ggtagctagt tcccaaaatc
      901 ataccctggt taaatagttt ttggaaaggc tctttagtcg gcacaacgcc aaggtcatag
      961 aggaacttgt gccagaagcg agcataaagc aagtgaagga ctgcgtgctc ggcaccaccg
     1021 atgtagatgt ccactggcaa ccaagctttg agaagatcct cgtctgccaa cttctcatca
     1081 ttgtgcgggt cgatatagcg gaggtagtac cagctagaac ccgcccattg tggcatagtg
     1141 ttggtttcac ggcgaccttt aacgccgtct tcccgcacca cttccaacca gtctgtcaag
     1201 ttagcaagag gtgactcccc tgtacctgaa ggcttgatgt ctgaggtttt tggcaatacc
     1261 agaggtaact cattttctgg tacggctgtg gaagtgccgt cttcccagtg gatgattgga
     1321 attggctcac cccagtaacg ctggcggctg aagagccagt cgcggaggcg gtaagaaatt
     1381 ttctcttgac caacaccatt ttcttccaac caagctacca ttttggcaat agcttcttcc
     1441 ttgttaagac catctaggaa atcagaattg atgtgggcac cgtcctctgt gtaaggagct
     1501 tcttctacat tgccaccttc cagaactgga atgatgtcca aaccaaactg tttggcaaat
     1561 tcccagtcac gctcatcgtg ggcaggaacg gccatgatag cacctgttcc gtagcttgcc
     1621 agtacatagt ccgcaatcca gattggaatt tctttaccgt tgacagggtt gatggcgtag
     1681 gcaccagtcc aaacacctgt cttgtctttt gccaaatctg tacgggctag gtctgatttg
     1741 agagaagctt ggcgtttgta ctctgccaca gcttctgtct gctcaggcga tgtaatgcta
     1801 tctaccaagt catgctcagg agcaagaaca gcataagtcg caccaaaaag ggtgtcagga
     1861 cgagttgtaa agactgtgaa gtccttgtct gtgtccttaa tcttgaaagt cacattggca
     1921 cccgttgact tgccgatcca attgcgttgc atatccttga tagactctgg ccaatcaact
     1981 tcttctaggt cgttgagcaa acgctctgca taggcagtga ttttcaacat ccattggcgc
     2041 attggcttgc ggacaactgg gtagccacca cgttcagacg ttccgtcagg aaggacctct
     2101 tcgttggcga tagctgttcc caattcctct acccagttaa caggcacttc tgcctcatag
     2161 gctaggcctt tttcatacaa cttggtgaaa atccactggg tccacttgta gtagttaggg
     2221 tcagtcgtat tgacctcgcg gtcccagtca taagaaaagc caagggcgtt aatctgacgc
     2281 ttgaagttag caatattttc cgccgtaaag tcagctgggt cattgcctgt atccatagcg
     2341 tattgctcag ctggcagacc aaaggcatcc caccccattg ggtgaagaac gttgtagccc
     2401 tgagcacgct tgtatcggct gagaatgtcc gtcgccgtat agccctcagg gtgaccaacg
     2461 tgcaagcccg caccagacgg ataagggaac atatctaggg cataaaagtt tggcttagcc
     2521 gcatctgttc ccgtcttaaa agtatgattt tttgcccaaa atccctgcca tttgggctcg
     2581 atttccttgt gattgtagaa gctcatatca tttctccatg tcaataaatt atctttacta
     2641 ttatatcacg ttttggggga attgggaaag acaaaaacag ccagttttca ctagctgttt
     2701 tcgcattttt accaaataat cacacggtct tcttttgcac gccacatgcc gtcgccttct
     2761 tgaacgccaa atgtttcatg gaattcatcg aagtttggca actggatgtt ggtgcgtagg
     2821 tgacctggtg catggacatc gacactagcc aacatctgca tgaactcagg acgagccttc
     2881 attcgccaga tgcgagcaaa gttagtgaag aattcctctg cggagaagtc atcttctgac
     2941 ttggctgctt ccaaggccgc tgcaatccca ccaaggtcag caatgttttc tgacacggtc
     3001 aacttaccat tgattttggc accgtaagaa tcctgaccct caaactgatc aataacctgc
     3061 tgggtacggg cctcaaaggc tgcataatct tcctctgtcc accagttatt caagctacca
     3121 tgctcatcaa aggaagcacc gtttgagtca aaggcatggg aaatctcgtg ggcaatgacg
     3181 gcaccgatac cgccgtagtt ggctgacgaa gattgctcca aggagtaaaa cggagcctgc
     3241 aaaatcgccg ctgggaagac aatcaagttc ttctgtgggt tatagtaggc gttgaccatg
     3301 tgagctggca tgccccactc cttaatgtcc acaggcttgt tccacttgct ccaaccatgg
     3361 gcgatgtcaa tcttgtttag ttcgatggca ttttccacca aggacttgct tgggtcaaca
     3421 atcttcttat aataacgctc tggcaaggct tctggatagc cgatataagg cttgataaca
     3481 ttgagtttga caatggcctt gtcacgcgtt tcctgagcca accagtctgc cgtttccaaa
     3541 cgagatttgt aaacctcaat catcttggca actttggctt ccacatcggc cttagcttct
     3601 ggtgagaatt tttctcctgc ataccaaaga ccgagggctt ggttaaagta gccttgtgcc
     3661 aagttgtagg ctgctttttc ttggttttgc gcctgcggtg taccagaaag agcacggctg
     3721 taggctcctg ctagaatgcg aatttcatcc gacaggaagg cagtataggc gccagccgct
     3781 ttcaaaatca aggtcgcctt caaaagctcc caattatccg cactgtaaat gtccttggca
     3841 gcctgccaga aacgttcctc aggcacgata atcttgtctg gcgtttgacc taaaatcgct
     3901 gtgaagaaat catccaaagg caactctggt gccaaggcag taaaatctgc ccactcgtac
     3961 gggtggtaaa gtttggcgta ctcagaacct tcttcatttg acagaacata cttggcaatc
     4021 gtggcatcta gttccaaacg cttgtccaag aggtccttga tttcctcatc gctgaaacca
     4081 aattttggca ggagggcttc ttggctctca cgccagattt tgagtaattc tgcacccttt
     4141 tcatgacctt cctcatagta ggtcgtatct gggaggataa tgcctagaga atctgcccag
     4201 aggacattgg tggtcgcgtc cataaagtca ggtgccacgc cgaaaggcat gaggtttggc
     4261 ttgcctgcca actcatattc tgccaacttg ctggtgaatt cttcgaaaga gttgagagcc
     4321 ttgtactctg caatcaaggc ctgagcaggt tctgctccca aacggtcacg ggtttcatag
     4381 tcggctactt gtttgtgaaa agccacaaag ttttgcaaaa cgctatcttc tgggacatct
     4441 tctcccgcca accaagcgtt tgtcgtgtca atcatgagct tttcaatctc atccgccaag
     4501 tctgagaaac cacctgttct tggcttatcg tctggaatca cagctgtttt tgcccattca
     4561 ccattgacgt attcgtaaaa atcatcttgt aaacgtgtca ttgattttct cctttgtctt
     4621 tcttaatgac tataataaca aaaaattctg acaatttcac ttatcagatg accgtgacca
     4681 agtatttttt agaataatac tcgaacaaac cacaagaagg ctgacaacag cacaggtccc
     4741 tgacatggtt aaatccagtt gattggccac taaaaaacct agcacaaccg ttagaatagc
     4801 gataccttgc cctaaaagca gcaattgcca aaaggatttg acccaacgta gggcagccat
     4861 acttggtgcc accaagaaaa caataacagt catcgagcca atcgcttcga aggccagaac
     4921 agtagttaag gaaactagaa tcaaaataac catttctaaa atccttgttc gtaagccaga
     4981 caaacgagca tggttgctat caaataggta cacttgtaaa cgatggtaag cccaagcaaa
     5041 aaatagaaca ataaccaacc aagccaaact cgacttgacc agactaacag ggagtgacca
     5101 ggctagaaca tccatacgat ggagcggagc aaaaagtact tccccctgca aaaccagatc
     5161 cacatccaag tgaacattgc gagcaaaaag agaaataagc aaaaccgcca ccgcaaaaaa
     5221 gaaagaaaaa actagacctg ttgcggcatc atgcgctatc tttcgactat gcagacggtc
     5281 aatggcaaga accgataata acccaaacag actggcacca actattagca atggcgaatc
     5341 caaactatga ctaataaaaa atcccagaac aatcccaagc aagacagaat gcgatagtgc
     5401 atctgccaac atcgattgat tttttacaac cagtatcgag ccgagcaagc cacaagaact
     5461 agcaataacc atcaaaatga gcaatacttc aaacacgacc attctccttt ctgacatagg
     5521 taacatacac aaatgcagac agggtcagac ctgtcagaca gacgataata gtcggtccgg
     5581 tcgataaacc agatacacta gagctaatcc aggtccctac gaaagccgac ccaattgcaa
     5641 cgattcctgc cagtaacaga ctcttatgat acgattttcc cagcatcaag ccaaagacag
     5701 ctggtgcaat caaaaaacta ctcatcaaaa tagctccgac taactttaat cctactgcaa
     5761 ttaggcaaat catcaaaaac atcgtcaact gctgcaagta ctttacacga acaccaataa
     5821 cccttgcaaa agtttgatca aacagatata gcttatagtc ttgataaaag aaagtaaaca
     5881 atgccaaagc caatagagaa ataattccga tgagtatcac atcatccagc tgaataaagg
     5941 ctgcctgtcc aaatagatag gtttgcaatc cagcctggga ggaccctgca aaggcttcat
     6001 ttccctgaat agcatttttc aagaccattc ccaaaccaaa gaaagacgca gacaccaatg
     6061 aaagggcatt gactaggctg tgaccacctt ttcgacgcaa ccaatggaca agtacataag
     6121 aaaggtagcc tgacaacact gctcctaaca gcaagtagag aggatgtcgc gactgaaaaa
     6181 tcatgaaaga gacaatcact ccaggataag aagcatgccc aagagcatcc ccaagcaaac
     6241 tctgtttagt aagaacagat atacttccga tagtgctggc tgctacagct aggctgacgg
     6301 tccctaaagc aactgtccag aaagaatact ctttgaaaac ctcaaacatg actgcctcct
     6361 ttggcatttc ctagaaacaa cccatttcct atgccgtagg tcgcctgata attctcgctt
     6421 gtcaaagtct catccatcgg accagagtca atcacatgct tatgaagcca gacaaggtga
     6481 tcaaagtagg catccagcgt cgttaagtca tgatgaatga caatggaagt tttcccttca
     6541 cattggaact ccttgagcat atccatgatc atgatttctg ttgcctgatc aatccctgct
     6601 agaggctcat ccataagata caattctgct tcctgtgcca gggctctcgc tagaaagacc
     6661 cgctgacgct gcccacctga aagctgatca atctgacgat ggcgtaaatc cgcaattttt
     6721 aaccgttcta gagcctgctc aacaatctgt ctatcagcct tagtcggtct tcgaaacatt
     6781 cccttactat gagcgaagcg tcccatcaga acaatttcaa agactgttgc aggaaattgc
     6841 caatttactt gactggattg gggaatatag gctacttttt gagcaatcaa cctctctaga
     6901 cctgcctcct gaccaagcaa gcgaacctgc cctgtgtcag gtttttccaa ccccaaaatg
     6961 accttgaata gactggactt cccagcacca tttggtccaa caatagccgt ccgactccct
     7021 ctgggaatca ccaaattgac atcttctaaa gccatggtct ggctggctgt atatgctaaa
     7081 ttgacatctt ttaattcaat gattgctgac atatttcctc ctatttttaa aaatgatatg
     7141 cctcattcat actcaatgaa aatcaaaacc agaccaacct accaagctga gaaagtcgat
     7201 aagattaaga taccgtacca acaaattgct ggcaaaccct atacatcgct tatttcaaca
     7261 catcagtaca tgaatttgat tttcgcagag caccaaggct tccttcaatc gtatgtttat
     7321 aaatctgtta aaaatggtcc aaaaacggaa agaactcgac ctagaccgag tcctttttac
     7381 tactcatttg aaatccctat tcacgcacag actactgata tataaagtcc cgctgtgaac
     7441 caagatcatt gaggtctaca agcggtattt ctagtcaagg acctcaataa ctggtgtgat
     7501 ttgctactaa cgcctatcct cccccaagcg ttaccacctc caatagaaag agccctatac
     7561 cgcttgtgct cgaaacaatt gattgtccct catattggta cctatcaact ctatcttcgg
     7621 taatatctct agtcttcatt gaatagcaag tccgttcgat ctgtactatt tcagatattt
     7681 aaccatcagt ttaacattat gtttgtacat gtcgataaag gtatcccctt cctcgccttc
     7741 tggtgccaag gaatctgaga acaactcctt accttcgcca gtaacaactt caacctgacc
     7801 acctttggct tttactgcct cttgcaattt cttcatgcgt tctggattgg ttgtagactc
     7861 tgtaaagata gccttgatat tatggtcgat gattaggtta actgtctcaa tcatgtcact
     7921 gttagccact tctgagtcgg tgctcacgcc ttgaggagca taaagagtga agtcataact
     7981 agcagcaaag taattaaagg catcatgtgg tgttaccaaa tagcgacttt cttttggaat
     8041 cacacttaat tctttttcta cccaggcatg caaatcatct agctgcgctt ggtatttttc
     8101 tgcatttttc tgaatcatct cagctttagc aggtaagagt ttttgtagtt cctctgaagc
     8161 tacagctaca gctgacttgt acaagggaat tgaaaaccag aagtgcggat cgacaatctc
     8221 ttctccatcc tcatccatcg tattcaagtc ttttgcatta aagtttttag aaacagctac
     8281 tccggtcttc tccaaagctt caaccatttt accttcaaag tgcaaaccgt gatagagaac
     8341 aaggtcagcc ttttgtaatt ttgataaatc actagatttg gctacgtaca aatgagggtc
     8401 ttctcctgct ggaatcagca aatcacgttc cacctcatca cccgccaact gatagaccat
     8461 gtcattgagg aaggaagtag tcacagccac tcttggctta ctagagcctt ctgtggtttg
     8521 cgatggacga caagctccta accctattag ggacaatagc agagcaaaac tgaacaatat
     8581 tttcttcata taggttctcc ttttattttt attaagcata cctaactata taattagatt
     8641 aatctaaaaa aatcattttg tcaactgatt tttaaatttt ttgatataat agtttcagaa
     8701 gaaagcgagt tctcatgaca ccaaacaaag aagattacct aaaatgtatt tatgaactag
     8761 gtcaattaga ccaaaaaatt accaataaac tcatcgcaga gaagatggcc ttctccgcac
     8821 cagccgtttc cgaaatgctt aaaaaaatgg tagccgaaga gctcatttct aaggatgcca
     8881 aggcaggtta tctcctcagc caaactgccc ttgaaatggt agccagcctc tatcgcaaac
     8941 accgcttgat tgaggtattc ttagttgagc aactcggcta ctctccagaa gaagtacatg
     9001 aagaagctga gattttagaa cacaccgttt cagatcactt tatcaatcgc ctagacctgc
     9061 tactggaaca gcctcaaact tgtcctcacg ggggaagcat tcctcaagca ggacaaccgc
     9121 tcatcgaacg ctaccagaca cggctgtcac agctaactga gacagggaac taccagcttg
     9181 tccgtatcca tgacttctat caactccttc agtacttgga acaacatgaa ttagctgtcg
     9241 gtgatttact aaccgtcaca gccttcgacc agtttgccca gaccatcacc atccagtaca
     9301 aggacaaaga gctcgccgtc ccaacagcca tcgctcaaca attattcatc gaaaaaagca
     9361 atcgcccagc ctaaacaagc tgagcgattt tttcttctaa aataaatagt tacctctttt
     9421 tcaaattacg gaaaatagat ctggctgcaa aaatagttgc ccacatacat acaccaacca
     9481 aagtaggaaa cctatataaa aacagcccaa tagaaaatga gggttatagg ttaaaggctg
     9541 caagacaaac atgagaatcc ctaccaaccc ccaccgcata ccccaggtca tctttctctg
     9601 gataatccac tccagccaat cttctccaac tgaacttctg gtttccagat actcttgatt
     9661 aaggtcttga aaaaattttc tcatatttct gcccacctca tcctaacttc aaagcataaa
     9721 ctaccacttt atgacaatat tatcatagca cattgttttc aaataaccaa tactgtcgaa
     9781 aaaaccagcc tactcgggct ggtcttcttg gagtcgctct cttaggcgac gacggtataa
     9841 aatctgcgat ggaatgaagt aaagaaaact tgccaaaata atccagcgtt tgtcaattcc
     9901 actaaagtaa atcactaaaa tcaaaagaaa ggcaatcgtc aaataaaaga aatgatttgt
     9961 gagcaatttt ttcatagtag cctccatacc tatttttcaa tattagtata tcaaaataca
    10021 caaatagagt acataccgtt gccaaaagtt ttacttattt ttcgtatcca aaacaatagt
    10081 caccggccca tcattgacca ggctaaccgc catatccgcc ccaaaaacgc ccacttcaac
    10141 aggcacaaag gccgacaagg cctggttaaa agcatcatag agttggctgg ctagggcagg
    10201 agctgcagct cctgtaaagg cagggcgatt acctttttgg gtgtccgaaa agagggtaaa
    10261 ttgggaaatg gataaaatct tgcccgccac atcttgaacg gacttgttca tcttgcctgc
    10321 ctcatctgaa aaaatccgca tattgacaat tttccgaaca gcatagtcca ggtcttcctg
    10381 tgtgtcatct ggccccacac cgactaggag caaaagccct tgttcaattt gcccatggat
    10441 acttccttcg atggtcacac tggcctgtga tacacgttgt agtacaattt tcatcttatc
    10501 cgttggtcct tttcactgag taaacttctg gcaccgactt aatcttgtcc accagactgg
    10561 tcaaggttgc caggttggaa ataccaaagg aaacgtggat agtcgcaaac ttcatatcct
    10621 tggttggctg ggcattgacc gaagaaatgt tcttgctggc attggtcaaa accttgagaa
    10681 catcattgag cagtcctgag cggttgagac cgtaaatgtc aatgtttgcc atgtattcct
    10741 tggtcgaatt ctcatcctcc cagtccacat caatcaagcg aacatcgtag ttttcttgac
    10801 tctttaggtt catacagtct acacggtgaa cagctacccc acgccccttg gtgatgtagc
    10861 cgacaatttc atcgccaggt actggattac aacatttggc aatccgtatc agcaagcctg
    10921 acgctccttc aatgaccacg ccaccttcgt gacggatttt cagactatct ttgttgtcgt
    10981 gtttgacttc gccaccattg accaattcat ccgcgacagc tttggcctta gcccgctcag
    11041 cttctcgacg ttctttctct gtcagacggt taaagattga tatggcagaa acttctccaa
    11101 aaccaactgc cgcaaaaagg gattcgtcgg tcttatagct ggtcttttgc aggacctcat
    11161 ccatgtggcg acggtccagg tattggttgg gaacgtagcc attttcttgg agtaagttct
    11221 gaagcatctc acgccctttt gaaacagaca attccttgtc ctgattcttg aagaactgct
    11281 tgattttatt gcgagccttg tgagttttaa ccaagttgac ccagtcacga cttggaccga
    11341 aagagttggc agaggtgatg atttccacct gatcgcctgt cttaagcttg gtcgtcaaag
    11401 gcaccatacg gccgttgacc ttggcacctg ttgctcgctc gccgaccttg gtatgaattt
    11461 cataggcgaa atcaatcggt acagaatcct ttggcaactc acgcacagca ccatctggcg
    11521 tgaaaacgta aatacgttct gtaaaaatat cgtccttgac agaatttaca aaggtttgcg
    11581 catccccagc cccttcttgg agttcaatca ggttgttaat ccagcgcaac tctttttcgc
    11641 tggcagttgc cttgccacca cgcttgtaag cccagtgagc tgccaccccg tattccgcca
    11701 cctgatgcat ttccatggtc cgaatttgga actcgattgg acctctcggt ccgtaaaccg
    11761 tggtatgaat agactggtag ccgttagctt tttggttggc aatgtagtcc ttgaagcgac
    11821 ctggcatagg tttccacaat tcatgaatat accctaacat agcatagaca tcgcttggag
    11881 tatccatgat acaacgaatg gcaatcaagt catagagttg atcaaaccgc tttttcttat
    11941 cgtgcatttt gcgatagata gagtaaatat gcttgggtct accgtaaatc tgaccatgta
    12001 gatggcgctc ttctgtataa tctcttagct tatcaacaac ttcattgacc aactcttccc
    12061 gttcacggcg cttctcattc atcatgcgcg taatcttgta gaactcaact tcattgagat
    12121 agcggaaaga catgtcttcc aattcccact tgatagaaga aatacctaga cggtgggcaa
    12181 gcggtgcata gatttccatt gtttcacgtg aaatacgttc ctgcttgtcc ttgcgcaagt
    12241 gcttaagagt ccgcatgttg tgaaggcggt ctgccagttt aaccagaatg acccgcatgt
    12301 cttgggacat ggctatcagc atgttgcggt ggttttcagc caactgctcc tcatgagact
    12361 tatactcaac cttacccagt ttggtcacac cgccgacaat atggcgaacc tctggaccaa
    12421 attcagcctc catatcatcc aaagttacat ccgtatcttc aaccacatca tgtaagaaac
    12481 cacaggcaac cgtcacagca tccagcttga gtcctgctaa aatacctgct acctggatcg
    12541 ggtgtacaat atagggttcg cccgatttac gaaattgtag cttatgagct tccgtcgcaa
    12601 aatccaaggc cttctgaaca aaagcaacat cttcggctgg aaggtaggtg gcagtcagcc
    12661 caacaacctc ttctcctgta aaattgattt ccttcatttg tttctctccc taactatttc
    12721 ctattatttt accattttca ctggaaaaga aaaaggaaag cggtaattca tccatactat
    12781 accattcaaa atgacgataa acaaagaaaa ccagacaaac aattttttag tca
//
LOCUS       DASFRC010000054        12820 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.054, whole genome shotgun sequence.
ACCESSION   DASFRC010000054 DASFRC010000000
VERSION     DASFRC010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 12820)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12820)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12820
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.054"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            222..1610
                     /locus_tag="U1087_001084"
     CDS             222..1610
                     /locus_tag="U1087_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoamide acetyltransferase"
                     /protein_id="HEM4755573.1"
                     /translation="MAIEIIMPKLGVDMQEGEIIEWKKQEGDFVNEGDVILEMMSDKT
                     SMELEAEESGVLLKIVHGNGATVPVTEVIAYIGAEGETVEAGASSAPAVEPAAAIEEV
                     PAGRTPVIVAPATAAKPQGSGKVRATPAARKLARELGIDLGLVPGTGANGRVHKVDVE
                     DFKGAAPKATPLAARIAADQGVDLSTLTGSGVNGKIVKNDVLAVLAPVAVETAAPVPK
                     AEEKPAKELPEGVEIIKMSPMRKAISKGMVNSYLTAPTFTLNYDIDMTNLMALRKQVL
                     EPIMNKTGLKVTFTDLIGLAVVRTLMKEEHRYMNASLINDAQEIELHKFVNLGIAVGL
                     DDGLVVPVVHGADKMSLSDFVVASKDVIKKAQSGKLKGAEMSGSTFSITNLGMFGTKT
                     FNPIINQPNSAILGVASTVQTPVVIDGEIKIRPIMALCLTIDHRIIDGMNGAKFMVDL
                     KNLLENPLELLI"
     gene            1884..3644
                     /gene="lpdA"
                     /locus_tag="U1087_001085"
     CDS             1884..3644
                     /gene="lpdA"
                     /locus_tag="U1087_001085"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002984864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HEM4755574.1"
                     /translation="MAIEIIMPKLGVDMQEGEIIEWKKQEGDFVNEGDVILEMMSDKT
                     SMELEAEESGVLLKIVHGNGATVPVTEVIAYLGAEGESVEVGSAPAPAEVAQATADLK
                     AAGLEVPAAPAAAPQAPKAELAADEYDMVVVGGGPAGYYAAIRGAQLGGKIAIVEKSE
                     FGGTCLNKGCIPTKTYLKNAEILDGLKIAAERGINLASTNYTVDMDKTVDFKNKVVKT
                     LTGGVQGLLKANKVTIFNGLGQVNPDKTVVIGDKVIKGRSIILATGSKVSRINIPGID
                     SKLVLTSDDILDLREIPKSLTVMGGGVVGVELGLVYASYGTEVTVVEMADRIIPGMDR
                     EVSVELQKVLSKKGMKFLTSVGVSEIVEANNQLTIKLNDGSEIISEKALLSIGRVPQL
                     AGLENLHLELDRGRIKVNAYQETSIPGIYAPGDVNGTKMLAHAAYRMGEVAAENAIHG
                     NHHKAKLDFTPAAVYTHPEIAMVGLTEDQAIEKYGKENILIGRNSFTGNGRAIASNEA
                     HGFVKVIAEKKYHEILGVHIIGPVAAEMINEAATIMESELTVDDVAASIHGHPTFSEV
                     MYEAFLDVLGVAIHNPPKRK"
     gene            3784..4629
                     /locus_tag="U1087_001086"
     CDS             3784..4629
                     /locus_tag="U1087_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM4755575.1"
                     /translation="MRKIIFLDVDGTLVDYHNRIPESAIRAIRQARENGHLVYVCTGR
                     SRAEMQPELWEIGLDGMIGGNGSYVEHQDQVIMHQLLSEEDSRAIVDWLHERGLEFYL
                     ESNNGLFASENFRERARETLRIYSMNKGKTAEEVADQEVEDVIHGMIFDGQLYRNDLN
                     KVSFVLDSYQDHLDSKQAFPQLVANTWGGRGESALFGDLGVKDIDKAHVISVLLDYLG
                     ASQADTIAFGDAKIDISMLDYCAVGVAMGNGGAEILAMADMITDDVEEDGLYNAFERL
                     GLLDK"
     gene            4808..5606
                     /locus_tag="U1087_001087"
                     /pseudo
     CDS             4808..5606
                     /locus_tag="U1087_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002303877.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
     gene            5806..7716
                     /locus_tag="U1087_001088"
     CDS             5806..7716
                     /locus_tag="U1087_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HEM4755576.1"
                     /translation="MAKDYTDLATDIVAHVGGKENISSLKHCVTRLRFGLKDESKADT
                     DYLKARDGVVTVVQAGGQYQVVIGNHVPDVYVAVQKVAGISGDGALDIDEGDGPKGNL
                     FDRFVDLVSGVFQPSLGVLAAAGIIKGLVSILAATMGLNNDNSALYAILNTAGDGFFQ
                     FLPIVLAFNAARKFRMNEFTGMAIAMALVYPTLPGTFATLKEAGLNNVFGIPFVLPAA
                     GSYLQTVMPVLLAVWIASHIEKFMKKITLDVVKVFIVPFVTILISVPLTFLVVGPVAN
                     YASDLLSAGFTAVMGFSPLLYGILLGALWQVMVMFGLHWALVPLAILQFSQNGWSNIL
                     LAAALPNFTQTGVLLAIMMKTKESKVKSVAMPAFISSIFGVTEPAIYGVTLPMKTPFY
                     ISCAVSAVIGAGLSFFDLKNYAMGALGIFMYPGYVSPELGVTPMWIMMGFSLAAIVAS
                     FAIQMALPVPYLYGEPTEKKSVEETKESVPELKEIKQEIIASPLIGKVVKLEDVPDAV
                     FASGAMGKGIAIDPLDGILVSPAKAEITLVFPTKHAIGLRTENGAELLIHIGMDTVSL
                     AGKGFESFVQVGDQVEAGQKLLEFDLHQIKAADLPVITPIIVTNTADYEDILVTQESQ
                     INSGDYLLTTVK"
     gene            7910..9585
                     /locus_tag="U1087_001089"
                     /pseudo
     CDS             7910..9585
                     /locus_tag="U1087_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018364488.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase/lipase family protein"
     gene            complement(9700..10029)
                     /locus_tag="U1087_001090"
     CDS             complement(9700..10029)
                     /locus_tag="U1087_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HEM4755577.1"
                     /translation="MITMHLYYTGPADNARAFAQEMEASGIADRIRQQAGNTRYQYFA
                     PLDDPHSILLVDSWTDQAALDIHHASPMMQEILDLRSKYQLTVTAERYQSDETGIPER
                     DKDFLQR"
     gene            complement(10279..11193)
                     /locus_tag="U1087_001091"
     CDS             complement(10279..11193)
                     /locus_tag="U1087_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM4755578.1"
                     /translation="MQPPLTDKQFKHTIDYDSRLLPYKYYHTCVMDGIPDILFHWHNE
                     FEINYVYGGTARYHIDYDYFNSQAGDIILIRPNAAHSIHPIEQRGHETDTLLFHLDML
                     GASQLDHTSMLYLQPLQTDVFKCILRIQPQDPGYAEIRQCLLTIFELVRHQPPYFELP
                     LKSRLFDFFYLLYRYRYIVRKNTDDMYRKNEKLRLLIEHIQQHYAENLTIEQLAEQMG
                     YTKTHFMTIFKQQTGTSCMEFIIQVRLRAATELLTNTLKPVLEIATEVGFNNLSNFNR
                     QFKQYYHTTPSSYRKQLRKNRTYTNFDK"
     gene            11305..12786
                     /locus_tag="U1087_001092"
     CDS             11305..12786
                     /locus_tag="U1087_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000110363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="family 1 glycosylhydrolase"
                     /protein_id="HEM4755579.1"
                     /translation="MSRFPKNFLWGGAIAANQAEGAYNVDGRGLVQTDVTTGGTVNSP
                     RYTTYIDKDGKPGKYASMGHAGGHLPEGATYAVLEDHYYPNHKAVDFYHRYKEDIKLF
                     AKMGYSVFRLSISWARIFPNGDDAEPNQAGLDFYRSVFEECRKYGIEPLVSIWHFDIP
                     LNLEQRYGGWTNRKLIDFYVRYAETIFNEYKGLVKYWITFNEINNTIMFLDMFSEPKD
                     SDYQDAYQHLHHQFVASAKAVKLGHQIDPSYRFGNMICGITFYPGTCDPADILENQHK
                     WEQNIFYCSDAQAKGRYGSYANRLWKEHNVVLQMEEGDLDILAEGKVDMYTFSYYMST
                     VVTTHKVEDTVSGNFSIGAKNPYLTYSDWGWAQDPTGLQYYLEKIYDRYEIPLMVVEN
                     GLGALDTVEEDGSIHDDYRIDYHRAHVNAMADAIANGVDLIGYTTWGCIDLVSAGTGE
                     MRKRYGFIYVDMDDAGNGSLARTPKDSFYWYKKVIASNGEDVE"
BASE COUNT         3777 a         2375 c         3009 g         3659 t
ORIGIN      
        1 tgagtagtgg ttctgggctt tttgcccagc ctcgactaag aatgcttgga aaagaattga
       61 gccgcttcga ttatcgaagt ctggtttggt tcttgacaag gtaagaaact gaaagaaagg
      121 aattgaaccc gtccggaaaa ctcggaaaag agataaatcg tatcgaaaat caggattttc
      181 tatttttcaa tcgttttctg ttcggacttg gtatcttaat aatggctatt gaaatcatta
      241 tgcctaagct cggtgtggac atgcaagaag gtgaaatcat cgagtggaaa aaacaagagg
      301 gcgatttcgt caacgaaggt gacgtcatct tggaaatgat gtctgacaag accagcatgg
      361 agctggaagc agaagagtca ggcgtcctat tgaaaattgt tcacggaaac ggtgctaccg
      421 ttcctgtaac agaagttatt gcctacatcg gtgctgaagg tgaaacggtt gaagccggcg
      481 cttcatctgc tcctgctgtt gaaccagcag cggctattga agaagtacct gcgggtcgta
      541 caccagtaat cgttgctcct gcaactgctg ccaaaccaca aggtagtggc aaggtgcgtg
      601 caacgccagc tgcgcgtaaa ttggcgcgtg agcttggaat cgacttgggt cttgttccag
      661 gaacaggtgc taacggtcgt gtccacaagg ttgacgtcga agacttcaag ggagcagctc
      721 caaaagcaac tccgcttgca gcccgtattg cagcagacca aggtgttgac ttgtcaaccc
      781 ttacaggttc aggtgtcaac ggtaagattg tcaagaacga cgttcttgca gtacttgctc
      841 ctgtagctgt agaaactgct gctccagtac caaaagcaga agaaaaacca gctaaagaat
      901 tgccagaagg cgttgaaatc atcaagatga gcccaatgcg taaggcgatt tcaaaaggta
      961 tggtcaactc ttacttgact gctccgacat ttacacttaa ctacgatatt gacatgacca
     1021 acctcatggc acttcgtaag caagtccttg agccaatcat gaacaagact ggtttgaaag
     1081 taacctttac agacttgatc ggtcttgcgg ttgttcgtac tttgatgaaa gaagaacacc
     1141 gttacatgaa cgcatctttg attaacgatg cacaagaaat cgaattacac aagttcgtca
     1201 accttggtat cgcagtgggt ctagatgatg gcttggtggt tccagttgtt cacggcgcag
     1261 ataagatgag cttgtctgac tttgtggtgg cttcgaaaga tgtcatcaag aaggctcaat
     1321 ctggtaagtt gaagggggct gaaatgtcag gttcgacctt ctctatcacc aacttgggta
     1381 tgtttggtac taaaaccttt aacccaatca tcaaccaacc aaactcagca atccttggtg
     1441 tagcatcaac tgttcaaaca ccagttgtta ttgacggcga aatcaagatc cgtccaatca
     1501 tggcactctg cttaaccatc gaccaccgta tcattgatgg tatgaatggt gctaagttca
     1561 tggttgactt gaagaacttg ctggaaaacc cattggaatt gttgatctga gataagatgc
     1621 aaaaggcgtt aagaaaaacg tatgaaaata ggaaatcaac gatgtgcctt gaggcacgag
     1681 gcgatttatc tttttcaata ggtttttagc ctgtgctcaa tttggtaaag agaaaaaata
     1741 aagaaaggga ataagagcga gagagtttta gcaattgaac ccgagcggaa agctcggaaa
     1801 aaagataaat cgtttagaaa atcaggattt tctacgattt cctatttttc agtcgctttc
     1861 tcttcgctct tggtatcata actatggcaa ttgaaattat tatgccgaaa cttggtgtag
     1921 atatgcaaga aggcgaaatc atcgagtgga aaaaacaaga gggtgatttt gtcaacgaag
     1981 gtgatgttat cttggagatg atgtcagaca agacaagtat ggaattggaa gcagaagaat
     2041 caggtgtact cttgaaaatc gttcatggta acggtgcaac tgttcctgta acagaagtca
     2101 ttgcttacct tggtgcagaa ggcgaatcag ttgaagttgg tagcgcacct gctccagctg
     2161 aggttgcaca agcaactgcc gacttgaaag cagctggttt ggaagtgcct gcagctcctg
     2221 cagcagctcc acaagctcct aaggctgaat tggcagctga cgagtacgac atggttgttg
     2281 tcggtggtgg tcctgctggt tactacgcag ctattcgtgg tgctcaattg ggcggtaaaa
     2341 tcgctatcgt tgagaaatca gaatttggtg gtacctgctt gaacaagggt tgtatcccaa
     2401 ctaagaccta ccttaaaaac gctgaaattc ttgacggctt gaagattgct gctgagcgtg
     2461 gtatcaacct tgcttcaaca aattacaccg ttgatatgga caagacagtt gacttcaaga
     2521 acaaggttgt gaagacattg actggtggcg ttcaaggtct cttgaaagct aacaaggtaa
     2581 caatcttcaa cggtcttggt caagtaaatc ctgacaagac tgttgtcatc ggcgacaagg
     2641 tcatcaaagg tcgtagcatc attcttgcaa ctggttctaa ggtttctcgt atcaacatcc
     2701 caggtattga ttctaaattg gtgttaactt ctgatgatat ccttgacttg cgtgaaattc
     2761 ctaagtcact cactgttatg ggtggtggcg tagtcggtgt ggaacttggt ttggtttacg
     2821 cgtcttacgg tactgaagta acagttgttg aaatggctga ccgtatcatt ccaggtatgg
     2881 accgcgaagt gtctgttgaa ttgcaaaaag tcctttctaa gaaaggcatg aaattcttga
     2941 catcagttgg agtatctgaa attgttgaag ccaacaatca attgacaatt aaattgaacg
     3001 atggttcaga aattatctct gaaaaagctc ttctttcaat tggacgtgta cctcaattag
     3061 ctggtcttga aaatcttcac cttgagttgg atcgcggtcg tatcaaggtt aatgcttacc
     3121 aagaaacttc tatcccagga atttatgcac ctggtgatgt caacggtact aagatgttgg
     3181 cacacgctgc ttaccgtatg ggtgaagtgg cagctgaaaa tgctattcac ggtaaccacc
     3241 acaaggctaa attggacttc acaccagcag cggtttacac acacccagaa attgctatgg
     3301 ttggtttgac tgaagatcag gctatcgaga aatatggtaa agaaaacatc cttatcggtc
     3361 gcaacagctt tactggtaac ggtcgtgcta ttgcttctaa cgaagcacat ggtttcgtaa
     3421 aagttatcgc tgagaagaaa tatcacgaaa tccttggtgt tcacatcatc ggtccagttg
     3481 cagctgaaat gattaacgaa gcagcaacta tcatggaatc tgagttgaca gttgatgacg
     3541 tggcagcatc aatccacggt cacccaacct tctctgaagt tatgtacgaa gccttccttg
     3601 atgttcttgg tgttgcgatt cacaacccac caaaacggaa ataatcagat aagcaaaaag
     3661 aaagtccatg tggctttctt tttttgatgt tcataggata gtatcaatct ttcgcagttt
     3721 ttgactgtta tttgatagaa aaacagacta tacttgtagt agaaaaaggc aaggagaata
     3781 aagatgcgca agattatttt tttagatgta gacggaacct tggttgacta tcataatcgg
     3841 attccagaat cagctattcg tgctattcga caagctcgcg aaaatgggca cttggtctat
     3901 gtctgtactg gtcgcagtcg agcagaaatg cagccagaat tgtgggagat tggtcttgac
     3961 ggaatgattg gtggcaacgg ctcttatgtc gagcatcaag atcaggtcat catgcaccag
     4021 ctcctatcag aagaggatag cagagcgatt gtggattggc tccatgaacg cggcttggaa
     4081 ttttatctgg agagcaacaa tggcctcttt gccagtgaga atttccgtga acgtgcccgt
     4141 gaaaccctgc ggatttattc catgaataaa ggaaaaacag cagaagaagt ggccgatcag
     4201 gaagtagaag acgttataca cggcatgatt tttgatggtc aactctaccg caatgacctc
     4261 aacaaagtca gttttgtgct cgattcctac caggaccact tggattccaa gcaagccttt
     4321 ccgcaactgg tcgcaaacac ctggggaggt cgcggagagt cagctctctt tggtgacttg
     4381 ggggtgaaag acatcgacaa ggcccatgtc atttctgtat tgctagacta tttgggtgct
     4441 agtcaggcag acactatcgc ctttggtgac gctaaaattg atatttccat gctggactat
     4501 tgtgcggttg gggtcgctat gggcaatggc ggagcggaaa tcttggctat ggcagatatg
     4561 ataacggacg atgtagaaga agacggcctc tacaatgcct ttgaaagatt gggactactt
     4621 gacaagtagc tctcagaata aatcatagta tcccttgcaa aaccgcttac aatctgataa
     4681 gataagagta ggattgttac tgataagcag gcaaaaccta agtggatagt gaaggggctg
     4741 gcaacagtcg tatttgctat atgcttgggt tcttttttat cagtcgagta aataggcggt
     4801 aaagtagatg cagattgaaa aagtttataa caacaatgtc attcaagcaa tagatcagca
     4861 gggccgtgag ttgattgtca tggggaaagg attaggtttt cagaaaaaag caggggaaga
     4921 attagacacc agcaaaatcg agaaaacctt tgtgctacaa aatgactacc aacaatcaga
     4981 tttatcgagt ctgtacctgc aaatggagag cggtgaagtc gaagtagtca atgccattat
     5041 caatagggca gaagaaactt tagaagttca gtttgatttg tctttgtatc tagccttagc
     5101 agaccattta cattttgtat ttcagcgatg ccgtgaaggt atctttattg agaacccgct
     5161 gtcttgggaa gtacgtaagt tttatccgaa ggaataccaa attggtttag aagccttgca
     5221 gttggtgcag gagcgtttag gcttggaact aggaaaggga gaggcctcgt ctatcgctct
     5281 ccatctggta aatgctcaga agaatggtgc ttttggcaag gaaacccaaa caattagtaa
     5341 aatcgtgact cagattttag acattgtccg ccttcatttt ggtagtgtga cctacgagga
     5401 ggataccagc tatcatcgat ttgtaacaca tattcagtat tttgctcaac gtgtggccaa
     5461 tggggttgtt gaaggccaat tatccagatt ccttcgcctg tacaacaaaa attcgccagc
     5521 atattgcgga agtttaccat tttgaaatgt ccaaagatga acaagtctat ttaaccattc
     5581 atattcaacg tttaaaaact agttaaaaaa ttaaaaaaga aaaaaacgga aaacgcttgc
     5641 aatttaattt gcgatgtgtt atcataatct caacaaaagg attgttactg gttagcaggc
     5701 aaaacctaaa tatatacaag atactctttt tggcttgggc caagaggtag tgtttggtat
     5761 atgtttaggt ttttctgttt ttccagaaaa gaaaggagcc ggaaaatggc aaaggattat
     5821 acagatttag ctacagatat tgtagctcat gttggtggaa aagaaaacat cagcagtttg
     5881 aaacactgcg tgactcgtct tcgttttggt ctcaaggatg agagcaaggc tgatacagac
     5941 tacttgaagg cgcgtgatgg cgttgtgaca gtagttcaag caggtggtca ataccaagtg
     6001 gttatcggga accatgtacc agacgtttat gtggctgtgc aaaaagttgc agggatttca
     6061 ggagatggcg ccttggatat tgatgaaggt gacggaccga agggaaatct atttgaccga
     6121 tttgttgacc tagtttcagg tgttttccag ccttctttag gagtgcttgc agctgcaggg
     6181 attatcaaag gattggtatc catcctagcc gctacaatgg gtttgaacaa tgataatagc
     6241 gccctatatg ctattttaaa cacagctgga gatggattct tccaattctt gccaatcgtc
     6301 ttagctttca atgctgcacg aaaattcaga atgaatgaat ttactggtat ggcaattgct
     6361 atggcattgg tttacccaac tctgccaggg acatttgcga ctctaaaaga agcgggtcta
     6421 aataatgttt ttggcatacc atttgtactt ccagcagcag gtagctactt gcaaactgtg
     6481 atgcctgtcc tacttgctgt ctggattgct tctcatattg agaaattcat gaagaaaatt
     6541 acgcttgacg tagttaaggt cttcattgta ccgtttgtga caattctaat ttcagttcca
     6601 ttgacattct tggttgtagg tcctgtcgcg aactacgctt cagatctttt gtctgcaggc
     6661 tttactgcgg ttatgggctt tagtccacta ctttatggta ttctacttgg tgctttatgg
     6721 caagtaatgg ttatgttcgg acttcactgg gccttggtac cacttgcaat acttcagttt
     6781 tctcaaaacg gatggtcaaa tattttgtta gctgcagcgc ttccaaactt tactcaaact
     6841 ggtgttcttt tggcaattat gatgaaaacc aaagaatcaa aagtgaagtc agttgcgatg
     6901 cctgctttta tctcttctat atttggtgtc actgagccag caatctatgg tgttactctt
     6961 cctatgaaaa caccattcta catttcttgt gcagtgtcag cagtaattgg tgcaggtctc
     7021 tcattctttg atttgaaaaa ctatgctatg ggtgctctcg gtatttttat gtatccaggt
     7081 tatgttagtc ctgaactagg tgtgactcca atgtggatta tgatgggctt ctctttggcg
     7141 gcaatcgtcg catccttcgc tatccaaatg gcgcttccag ttccttactt atatggagaa
     7201 ccaactgaaa aaaagtccgt tgaagaaaca aaggagtctg ttccagaatt aaaagaaatt
     7261 aaacaagaaa ttattgctag tccactaatc ggtaaagtag ttaaattaga agatgttcct
     7321 gatgcagtct ttgcttcagg tgcaatgggt aaagggattg ctatcgatcc cctagatggt
     7381 atacttgttt ctccagctaa ggctgaaata actcttgtat tcccaaccaa acatgctatt
     7441 ggtcttcgta ctgaaaatgg agcagagctc cttatccata ttggtatgga tacagtctct
     7501 ctagctggta aaggctttga atccttcgtc caagtaggtg accaagttga agcaggacaa
     7561 aaattgctgg aatttgatct ccaccaaatc aaagcagctg acctaccggt catcactcca
     7621 attatcgtga ccaatacagc tgactatgag gacatcttgg taacccaaga aagccaaatc
     7681 aacagtggtg attacctgtt gacaacggtc aaataactac attttcgtat agaaacaatg
     7741 aaatatttct atacaaaaca ggaaaaagac tatttgtata gattatcgta acaaatctaa
     7801 atagatgcta atcagaacgt actttccacg gattttgcga atatattagt atttatttag
     7861 attttatttt gaagaaagtt tggatatatt aatatctaga ggtgtgtaaa tgaaaaagat
     7921 tgcttatttt ttactgagtt taagtctatt tgttgcttgt ggacaaagta aggaagtaac
     7981 aaatacactg tttaagaacg acatcacgaa aacaatcagt agtggtgagg taaaggggaa
     8041 aaaggatagc acgaccgcta cgattgaatg gttaggaatc ccctatgcag cggaaccagt
     8101 aggtgagcta cgttggaagg cgccacagcc tgtagaaaaa tgggaaggta gttttgatgc
     8161 aactgaaatc ggatctcctt ttatacaaat ctcaaaaggg gaagtagtcg gttcagaagg
     8221 agcgctaaat cttgatgttg ttagacctga taatacggag gctaatctac cagtgattgt
     8281 ttttctgcat ggaggaaata atcaaacagg tcatgcacaa gaaatcaaag gaaatggctt
     8341 tgtaaatgac atcaatgccg tttatgtttc aatcaattat cgcttgggcg ctcttggttt
     8401 caatccgttg gaagcactta agataggaac cgatgaagaa aattctggga attatactct
     8461 cttagacatt gcggcagcat tggattgggt ggaagaaaac attgaggtct ttggtggtga
     8521 taaggataat gtgaccctag caggcttttc agctggtggt cgtgatgtaa tggcaatatt
     8581 aatttctcca ctatttaaag ataaatatga taaagcaata tcatttagtg gaggaatgac
     8641 tctagcagat gaaacggata gtcaagatat ttttgcaacg gcgatagcac cattagttgt
     8701 tgaagatgga atcaagtcca cagaacttga agcaaaagaa tggttgttat ctaacgattg
     8761 tcaagtagct gattatcttt atggacttcc tgcggagagt ttgacttcgt tgatgggaaa
     8821 tgctggtatt cgtatgtctg tctttccgca cctgtataaa gatggggtag tcattccgaa
     8881 ggaaggattt gatacttcaa attataatga tgtgcctctt cttttaataa caggaactag
     8941 tgaattttct ttattcacag ctttcgatcc ctattttgta aattctgtga cagatggcag
     9001 tctattttca gatgctgaca aattaaaaga atttatattt actgaataat atggtagtgc
     9061 tctgtatcgt ctgtctaaca ctgtagatag tgctagaaaa ttgcaaggaa catataaatc
     9121 accaatatac attggagaaa tttcttatgg agataataca gagactgctc caaaaacagc
     9181 tcagttgttg ggtgcgtttc atggcgtatt tgaaccttta cttcaacagc catcaaacta
     9241 tgctactttc attgtgaaga tttcaattct gaaggtgcta aacaactaag ccaacagttt
     9301 aaagcatatt tgaaaggatt tatcacaagt agtaaccctg aaggagaaaa attaccacaa
     9361 tgggaagagt ggacagctga cggcagtcag gtaatgaaat ttgatgctag tttagaaaaa
     9421 gctaaaattg aaatgggtga agattctcaa actactgagg atattgtcgc gaaccttcga
     9481 gcagatagta ctttatctgc agataaaaaa caagttttaa ttgacaatgt attgaacggt
     9541 cgttggttta gtcaaccatt ggatggtttg aaagttaatg aatagtttat tttttgatgt
     9601 attaaaaaaa tataaaagta aaaagcaaca caaggtgttg acaacggtca aataaaaaat
     9661 aaagtggttg gcagtgccaa tcactttttt gaatcttgtt tagcgttgaa gaaaatcctt
     9721 atctcgctca ggaatgcctg tctcatcact ctgatagcgt tcagcggtga cagttagctg
     9781 gtacttacta cgtaagtcta ggatctcctg catcattgga gaagcatggt ggatgtccaa
     9841 agctgcttgg tctgtccagc tatcaaccaa gaggattgaa tgaggatcat cgagcggtgc
     9901 aaagtattga taacgtgtat ttccagcctg ctggcgaatg cggtcggcaa tgccactagc
     9961 ttccatttcc tgagcgaaag cacgtgcatt gtcagctggt ccagtgtagt agaggtgcat
    10021 ggtaatcata gtataagata tagagggcgt tcagcggaca cagacaaaat ataggctttt
    10081 agtttacttt tagtactagg caatgagctg caggcagtac tgaagtacga caaagcgaat
    10141 taacgaagta ataaaagaaa aactaaatga cgtaggaaac agaacgacga cgcaagcgtc
    10201 cagttctcgt ttatcttttg ggcacagtcc gtagcccgta ttcagttcaa ccaaatacgg
    10261 aggccctagt cctttctatt atttatcaaa attagtatag gtcctattct tccgcaattg
    10321 cttgcggtag ctgctagggg tggtatggta gtattgtttg aactggcggt tgaagttgga
    10381 caggttatta aagccaactt cggtcgcaat ttcaagcaca ggcttgagag tgtttgtcag
    10441 gagctcggta gctgcccgca gtcggacttg gatgataaat tccatacagg aagttcctgt
    10501 ttgttgcttg aagattgtca taaaatgggt ttttgtatag cccatttgct ctgctagctg
    10561 ctcgatggtg agattttctg cataatgttg ttggatgtgt tcaatcaaca accgcagttt
    10621 ttcatttttc cgatacatat catcggtatt ttttcggacg atgtagcggt agcggtagag
    10681 caggtagaag aagtcaaaga gtcggctctt gagaggtagc tcaaagtaag gcggctggtg
    10741 tctgaccaac tcaaaaatgg tgagcaggca ttgtctaatc tctgcgtagc cagggtcttg
    10801 gggctggatg cgtagaatgc acttaaaaac atctgtctgt aagggttgca ggtagagcat
    10861 actggtatga tccagttgag acgcccccag catatccaag tgaaagagaa gggtatccgt
    10921 ttcgtgcccc cgttgctcaa tcggatggat ggaatgcgca gcattgggtc ggatcaggat
    10981 aatatcacca gcctgactat tgaaataatc atagtcgata tggtaacggg ctgtccctcc
    11041 gtaaacatag ttgatttcaa attcattgtg ccaatgaaag agaatgtcag gaatgccatc
    11101 catgacacag gtatggtaat acttgtaggg taacagacga ctatcgtagt caatggtgtg
    11161 cttaaactgt ttatccgtta atggtggttg cataggttcc tccttttcgt aggatagtat
    11221 cattatagca tattatttga gaagaaaagg gtttcaaatc tgtttatact atatttgtta
    11281 gaaaaaagat aagggagaaa ttagatgtca cgatttccaa aaaatttcct ctggggagga
    11341 gctattgcag ccaaccaggc agagggtgcc tataatgtgg acggacgcgg tttagtccag
    11401 acagacgtta caacaggagg aactgtcaac agcccccgct atacgactta cattgataag
    11461 gacggcaagc caggtaaata tgcttctatg gggcatgctg gcggtcatct gccagaaggg
    11521 gcgacctatg ccgtcctaga agaccactat tatccaaacc acaaggctgt ggacttctac
    11581 caccgttata aagaagatat caagctcttc gcaaaaatgg gttactccgt tttccgcttg
    11641 tcaatttcat gggcacggat tttcccaaat ggtgatgatg cagagccaaa ccaagcaggt
    11701 cttgatttct atcgttctgt ttttgaagaa tgccgcaaat atggcattga gccattggtt
    11761 tccatttggc acttcgatat acctttgaac ttggagcaac gctatggtgg ttggaccaat
    11821 cgtaagttga ttgatttcta tgtccgctat gctgagacaa tttttaatga atataagggt
    11881 ttggtgaaat actggattac cttcaatgag attaacaaca ctatcatgtt tttggatatg
    11941 tttagtgaac caaaggattc tgattaccaa gatgcctacc aacacttaca tcaccaattt
    12001 gttgcctctg ccaaggctgt aaaattagga catcagattg atccgagcta tcgattcgga
    12061 aacatgattt gtggaatcac cttctaccca ggaacctgtg accctgcgga tattttagaa
    12121 aatcaacaca aatgggaaca gaatattttc tattgtagtg atgcacaagc caaaggtcgt
    12181 tatggttcct atgcaaacag actgtggaag gaacacaatg ttgtattgca aatggaagag
    12241 ggagacctag acatccttgc tgaaggtaag gtggatatgt ataccttctc ttattacatg
    12301 tcaacagttg tgaccactca taaagtggaa gacacggttt ctgggaactt ctcaatcggt
    12361 gccaagaacc cttacttgac ctattcagac tggggatggg cccaagatcc aactggactc
    12421 caatactatc ttgaaaaaat ctatgaccgt tatgagattc cactcatggt tgtagaaaat
    12481 ggattaggag ctttggatac agttgaagaa gacggctcta ttcacgatga ttaccgtatt
    12541 gactaccatc gtgcccatgt caatgccatg gcagatgcca ttgctaatgg tgttgatttg
    12601 attggctata ccacttgggg ctgtattgac ctagtatcag cagggacagg tgaaatgcga
    12661 aaacgctacg gctttatcta cgttgatatg gatgatgctg gaaatgggtc acttgctaga
    12721 acaccaaaag attcattcta ctggtacaag aaagtcattg ccagcaatgg tgaggatgta
    12781 gaatgaggaa gacggcagtg tgccgtttca gattgaagaa
//
LOCUS       DASFRC010000055        12765 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.055, whole genome shotgun sequence.
ACCESSION   DASFRC010000055 DASFRC010000000
VERSION     DASFRC010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 12765)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12765)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12765
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.055"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..1963)
                     /locus_tag="U1087_001093"
     CDS             complement(<1..1963)
                     /locus_tag="U1087_001093"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: protein motif:HMM:NF020596.1"
                     /note="This family includes IgM or IgG-cleaving cysteine
                     proteases; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IdeS/Mac family cysteine endopeptidase"
                     /protein_id="HEM4755580.1"
                     /translation="MDIHIRFSLRKLAVGLVPVTFLFLANQSVLSAQAETISSLEEET
                     SLLEGDLVPQSLEIINVEEQGEKNNSEFTGLNILVESDNLAQGSENEVGPSELKNELL
                     EVKIDNLFESTSIEIHADMEEKVIPEHEDSSLPSNLPVAVQKDMVEQPISLYTSEDGQ
                     YREIIWAQGITPPSMGQGGDFKKEVTGEFIEYTMPYEAGKGYYDANKSLDASLEDLNL
                     CFAAVSSNMLHWWLEQNKEYVERYISEKYGADLGQQDYSLTDIRRYTDSFENQQNSRI
                     FNLFKAYYGRRLNGFVSDALVDLFINGYPPKSQGGVNLENPDLVPDKRGGFFHEVFKE
                     KMLTDRMFSGDYLYFGNLVRNNLENQGLLGLTYRTFGTTTHIVTVWGAEYDEKGLIRA
                     VYITDSDDQHHPIGLKRMGITRDSSGKPRLNNNVVKNSFGSHLDYVHTINLGRKHWET
                     YFNGLEDEKQTARQKLSEAKFGLLHAIHAQEEFSDKEERSYLTLIEEKYFEGLKQINQ
                     AMAKQELSEILQSALQSLRIPMKSVGQALAYDRPFGNLIVHGNSVRHDLPLGHLSIHG
                     DSVRYDLPLGHLSIHGDSVKYDLPLGHLSLHGSSVTHELPVGHVSLHGSSVTHEQPVG
                     HLSLHGSSVSHELPVGHLSLHGSSVSHELP"
     gene            complement(2098..3603)
                     /gene="pyk"
                     /locus_tag="U1087_001094"
     CDS             complement(2098..3603)
                     /gene="pyk"
                     /locus_tag="U1087_001094"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008809276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEM4755581.1"
                     /translation="MNKRVKIVATLGPAVEIRGGKKFGDDGYWGESLDVEASAQKIAQ
                     LITEGANVFRFNFSHGDHQEQGERMATVRRAEEIAGKKVGFLLDTKGPEIRTELFEGD
                     AKEFSYTTGEKIRVATKQGIKSTREVIALNVAGGLDVFDDVEVGKQILVDDGKLGLTV
                     VEKDAVNREFVVLVENDGVIAKQKGVNIPYTKIPFPALAERDNADIRFGLEQGLNFIA
                     ISFVRTAKDVEVVRNICKETGNDHVQLFAKIENQQGIDNIDEIIEAADGIMIARGDMG
                     IEVPFEMVPVYQKMIITKVNAAGKAVITATNMLETMTEKPRATRSEVSDVFNAVIDGT
                     DATMLSGESANGKYPVESVRTMATIAKNAQTLLNEYGRLNSDHFNRASKTEVIASAVK
                     DACHSMNIKLVVTVTETGYSARSISKYRPDADILAVTFTEKVQKSLMLNWGVIPVVTN
                     RPDSTDDMFDLAERIAKEQGLVEAGDDIVIVAGVPVGVAGSTNTMRIRTVK"
     gene            complement(3670..4680)
                     /gene="pfkA"
                     /locus_tag="U1087_001095"
     CDS             complement(3670..4680)
                     /gene="pfkA"
                     /locus_tag="U1087_001095"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005590682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HEM4755582.1"
                     /translation="MKRIAVLTSGGDAPGMNAAIRAVVRQAISEGMEVYGINEGYAGM
                     VAGDIHELSARSVGDIISRGGTFLGSARYPEFAKLEGQLKGIEQLKKHGIEGVVVIGG
                     DGSYHGAMRLTEHGFPAIGVPGTIDNDIVGTDFTIGFDTAVTTAMDAIDKIRDTSSSH
                     RRTFVVEVMGRHAGDIALWAGIASGADVIVVPEEDFNINDIVDRIKAGYDNGKKHSII
                     VLAEGVMPAAQFAEELKAAGDTSDLRVTELGHIQRGGSPTARDRVLASRMGAHAVKLL
                     KEGRGGLAVGIRNEQMVENPILGTAEEGALFSLTAEGKIVVNNPHKADLDLAELNRNL
                     SI"
     gene            complement(4765..7875)
                     /locus_tag="U1087_001096"
     CDS             complement(4765..7875)
                     /locus_tag="U1087_001096"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEM4755583.1"
                     /translation="MLAQLDTKTVYTFMDSMVTIENYVGKAKELGYHALGIMDKNSLY
                     AAYSFMESCNKMGLQPIIGCELDWQLEGQEREVTTQLIALTTKGYRNLLKISTTKMTG
                     QDNFEDIRQYLVDIAVVVPYFSGIEHLELGVNYYIGVTVDTPVQDFKQAILPIHTVRF
                     FEEEQLESLQVLHAIRDNIPLNQVADIDSRQKLLSADSLTNLFSNRFPQAVDNLRDLV
                     AGISYQLNTDLKLPRFNRDRPAVEELYERSYQGLEEKGLANSLYKERLEKELSIIHQM
                     GFDDYFLIVWDLLRFGRSQGYYMGMGRGSAVGSLVAYALNITGIDPVKHNLLFERFLN
                     AERYSMPDIDIDIPDIHRADFIRYVRDRYGSTHAAQIVTYSTFGAKQAIRDVFKRFGT
                     PEYELSNITKKISFRDSLTSAYQRNAAFRQIINSKIEYQKAFAIAQQIEGQPRQTSIH
                     AAGIVMSDEDLTDTIPLKIGDDMLVTQYDAHAVEANGLLKMDFLGLRNLTFVQKMAEG
                     VRERYQQEIDIAKIDLEDKKTLELFAAGRTKGIFQFEQPGAISLLRRVKPGRFEDIVA
                     TTSLNRPGASDYSDNFVKRKHGQETVDLLDPTIAPILQPTYGIMLYQEQVMQIAQVYA
                     GFTLGKADLLRRAMSKKNAQEMQAMEAEFLQGALKNGHAEENAREIFGMMAKFAGYGF
                     NRSHAYAYSALAFQMAYFKSHYTDVFFDVMLNHSSSAYIEDAMQFDFEVARLTINNIP
                     YHDKFDKSKVYLGLKTLKGLPKDLALWILDHRPYKSVEDFILRLPDNFKKKDLLIPLI
                     QIGLFDDFDANRKKIIENLDNLFVFAEAIGTFFAEESYSWTDVEDYSDSEKFMLEQEL
                     LGVGISPHPLVNICRESKRSFTDLADLAVGNRATVLVQIQAIRLIRTKKTGEQMAFLR
                     VTDTKRTLDVTLFPESYRQYASVLEEGGMGYITGRVQERDGQLQLVLEKLEPVSLEKF
                     WILLENREHDYAVARILDKYRGSIPVVLHYQDSNQTIQAGHHMVMKTPQLEEELSEFV
                     MKTIFR"
     gene            8029..8403
                     /locus_tag="U1087_001097"
     CDS             8029..8403
                     /locus_tag="U1087_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM4755584.1"
                     /translation="MAWKFDNNMPIYIQISNTIKLQIVTNQLKSGDKLPTVRDLAEIA
                     GVNPNTVQRALSDLETEGFVYSVRTTGRFVTDNHELISQTRLHLAQKELENFVTNMLD
                     LGFNQDELTHQLDDYLKGVSYE"
     gene            8396..9103
                     /locus_tag="U1087_001098"
     CDS             8396..9103
                     /locus_tag="U1087_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4755585.1"
                     /translation="MNNAYTLVELQQVSKSYGGAVALNNVNLKLTAGKIIGLLGPNGS
                     GKTTLIKLINGLLQPEYGQVLINGRTPSPETKAIVSYLPDTTYLDESMKVSDAITFFT
                     DFYADFDKERALHLLQDLGIDLNSRMKHLSKGNKEKVQLILVMSRQAQLYVLDEPIGG
                     VDPAARDYILKTIVNNYSPTASVIISTHLISDVEQILDEVIFLQYGSVIRHENVDDLR
                     IESGESIDELFRQDFKA"
     gene            9120..9902
                     /locus_tag="U1087_001099"
     CDS             9120..9902
                     /locus_tag="U1087_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM4755586.1"
                     /translation="MFKKLLKYEFQSVGKWYLGIYAGALALSIILGFWLQALSLRAQA
                     GSTEPGGAEMVLFGTSSMTFGILIAALGLSTFFMVINRFRKNVYGRQGYLTMTLPVSS
                     HQIILSKLLASLVWYILAGITIILSIGIILAVLMLGSEEFMIPELHTVVQALDWPVIF
                     AHLFYMLIESTMGILLIYFSISVGQLFKDHRLLFAILTYIGISIVVGVFGTLVFTNYL
                     ENLYYAALPLYPSPILALINIILAFAYYFGTHFIMTKKLNLQ"
     gene            complement(9950..10996)
                     /locus_tag="U1087_001100"
     CDS             complement(9950..10996)
                     /locus_tag="U1087_001100"
                     /EC_number="3.5.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019312873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine deaminase"
                     /protein_id="HEM4755587.1"
                     /translation="MIVNNILTKEELLMLNVQELAKTELHCHLDGSLSLSAIRQLAQL
                     AEISIPDKDEELRKLVSIDGKVDSLMTYLKTFDFVRPLLQTEEALEIATSDVLGQASE
                     DGVLYIELRFAPELSTDKGLTILEAVKAVLRGMEKAQKEFGIVAKLLVCGLKQTDPSQ
                     TREIFSAIVDLAPEGLVGFDFAGNEADYPTHELAELIDYTQPLGYPMTFHAGECGCVT
                     NVAQALTLGIKRIGHGTALSGHAEAIQAFVNSGATLEMCLTSNLQTGAADSIEHFPYR
                     ELVEAGANITINTDNRTVSNTTLNREYQLFVEYFGTTKEEFYQFNRNAIQASFASEEE
                     KANLLDVLAQKYNL"
     gene            complement(11107..11194)
                     /locus_tag="U1087_001101"
     tRNA            complement(11107..11194)
                     /locus_tag="U1087_001101"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(11158..11160),aa:Ser,seq:gga)
     gene            complement(11197..11544)
                     /gene="ssrA"
                     /locus_tag="U1087_001102"
     tmRNA           complement(11197..11544)
                     /gene="ssrA"
                     /locus_tag="U1087_001102"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            11654..12247
                     /locus_tag="U1087_001103"
     CDS             11654..12247
                     /locus_tag="U1087_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HEM4755588.1"
                     /translation="MYKFWQKTIQVLSILTLIGTAIFLFWLYKIGILNDQNVLSDLIK
                     SQGALGSLSFLAIQIIQVVFPIIPGGVTTVVGFLVFHFWWGFFLNYLGISIGSIILFW
                     LARRYGKKFCLLFMSEDTFYKYESKIDNKRSYEIFFILCMLSPISPADIVVMITGLTS
                     MSYRKFIMITLLCRPFSVVAYSFFWIYGSQWLQQLLG"
     gene            complement(12387..12710)
                     /gene="tnpA"
                     /locus_tag="U1087_001104"
                     /pseudo
     CDS             complement(12387..12710)
                     /gene="tnpA"
                     /locus_tag="U1087_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018373723.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
BASE COUNT         3717 a         2822 c         2281 g         3945 t
ORIGIN      
        1 ctggcaattc atggctaaca gaagaaccat gaagggacaa atgacctact ggtaattcat
       61 ggctgaccga agaaccgtga agggacaagt gaccaactgg ctgctcatgc gtgacggagc
      121 ttccatgaag ggaaacatga ccgacgggca actcatgcgt gacggagctt ccatgaagag
      181 ataggtgtcc taaaggcaag tcatatttaa ctgagtcacc atgaatagat agatgaccta
      241 agggcaaatc atatctaact gaatcaccat gaatagatag atgacctaag ggcaaatcat
      301 gtcgaactga gtttccatga acaataagat ttccaaacgg tctatcgtaa gctagagctt
      361 gcccaacaga tttcatggga atccgtaaac tttgcagagc ggattgcaag atttctgata
      421 gttcctgctt tgccatagct tgattgattt gcttcaaacc ttcaaaatat ttttcttcaa
      481 ttagggtaag ataagacctt tcttccttat cagaaaactc ctcttgagca tggattgcgt
      541 gaagtaagcc aaatttagct tctgaaagtt tctgtctggc agtctgtttt tcatcttcca
      601 atccattaaa ataagtttcc caatgcttcc gaccaagatt gatggtatga acatagtcca
      661 gatgagaacc aaacgaattt ttcacgacat tattatttaa acgaggtttg ccagaggaat
      721 cccgtgtgat tcccatccgt ttcaagccaa ttggatgatg ctgatcgtcc gaatccgtaa
      781 tatatactgc tcggatcaat cccttctcat catactcagc cccccagacc gtcacaatat
      841 gagtagtcgt tccaaaagtt cgataggtca agccaagtaa accttgattt tctaagttat
      901 ttcgaaccaa atttccaaaa tagagataat ctccgctgaa catcctatcc gtcagcattt
      961 tctccttaaa tacttcatga aaaaagccac cgcgtttatc aggcaccaaa tcaggatttt
     1021 ctaaattgac ccctccttga ctctttgggg gatagccatt gataaataga tccaccaggg
     1081 catctgatac aaatccattt agacgacgac cgtaatatgc cttgaaaagg ttaaaaattc
     1141 ggctattttg ctgattttca aaagaatctg tgtaacgtct tatatcagtc aaagaatagt
     1201 cctgctgccc taaatcagct ccatatttct cactaatata ccgttctaca tactccttat
     1261 tttgttccaa ccaccagtgc aacatgttgg aagaaactgc cgcaaaacac aagttcaaat
     1321 cttctaagga agcatccaag ctcttattag catcataata accctttccg gcttcataag
     1381 gcatggtata ctcaatgaat tctcccgtta cttctttttt aaaatcacca ccttgcccca
     1441 tgctaggagg cgttatacct tgtgcccaaa taatttctct gtactgacca tcttcgctag
     1501 tataaagact gataggctgt tcaaccatat ctttctggac tgctactggt agattagaag
     1561 ggaggctact atcttcgtgc tcaggaatga ccttctcttc catatctgca tggatctcaa
     1621 tacttgtaga ctcgaaaagg ttatcaattt tcacttcaag taactcattt ttcagctcag
     1681 aagggcctac ttcattctca ctcccttgag ctaggttgtc actttctact aatatattta
     1741 gacctgtaaa ttcgctatta ttcttttccc cttgttcttc tacatttatg atttcaagcg
     1801 attgtggtac caagtctcct tccaacaggg aagtttcttc ttctagacta gaaatcgttt
     1861 ctgcttgggc agatagaaca gactgattgg ctagaaatag gaaagtcact ggaactaaac
     1921 caactgctag ttttctcaac gaaaaacgaa tgtgaatgtc catatgtcca tctctttcaa
     1981 cttagtcacc ttatattata tcaatacaat ttgaattttg caaaatcata ccatatattc
     2041 aaagaagcct atcattcaag ctaaggagct tgatagaata gactttttct ttatacatta
     2101 tttcacagtg cgaatacgca tagtgtttgt tgaaccagca acacctacag gcacaccagc
     2161 aacgataaca atatcatctc ctgcttcaac aagaccttgc tctttggcaa tgcgttcagc
     2221 caaatcaaac atatcgtcag ttgaatctgg acggtttgtt acaactggga taacacccca
     2281 gttaagcatc aatgattttt gtactttctc agtaaatgtt actgccaaga tgtcagcatc
     2341 tggacggtat ttagagattg aacgagctga gtaaccagtt tcagtaactg ttacaaccaa
     2401 cttgatgttc attgagtgac aagcatcttt tactgcagat gcaataactt ctgttttaga
     2461 tgcacggtta aagtgatcag agttcaaacg accgtattca ttaagaagag tttgtgcgtt
     2521 tttagcaata gttgccattg tacgaactga ttcaactgga tatttaccgt ttgcagactc
     2581 acctgaaagc attgttgcgt cagtaccgtc gataactgcg ttgaatacgt cagatacttc
     2641 agaacgagtt gcacgtggtt tttcagtcat tgtttccaac atgtttgttg ctgtgataac
     2701 tgctttacca gctgcattca ctttagtgat aatcattttt tggtaaactg gaaccatttc
     2761 gaatggtact tcgataccca tgtcaccacg agcaatcatg ataccatctg ctgcttcgat
     2821 gatttcgtcg atgttgtcga taccttgttg gttttcgatt tttgcaaaca attgaacgtg
     2881 gtcgttacca gtttctttac agatgttacg aacaacttct acgtcttttg cagtacgtac
     2941 aaatgagata gcaataaagt tcaaaccttg ctcaagaccg aagcggatat ctgcattatc
     3001 acgctctgca agagctggga aaggaatttt tgtgtaaggg atgtttacac ctttttgttt
     3061 agcaattaca ccgtcgtttt caaccaaaac aacaaattca cggtttactg catctttttc
     3121 aacaactgtc aaaccaagtt taccatcgtc aacaaggatt tgcttaccaa cttcaacatc
     3181 atcaaataca tccaaaccac ctgcaacgtt caatgcaatc acttcgcgag ttgacttaat
     3241 gccttgttta gttgctacgc ggattttttc accagttgtg tatgaaaact cttttgcatc
     3301 gccttcaaac aattctgtac ggatttctgg accttttgta tccaacaaga aaccaacttt
     3361 tttaccagca atttcttccg cacggcgtac agttgccata cgctcacctt gttcttggtg
     3421 gtcaccatgt gagaagttga aacggaatac gtttgcacct tcggtaatca attgagcaat
     3481 tttctgtgct gacgcttcta catcaaggct ttcaccccag taaccatcat caccgaattt
     3541 ttttccacca cggatttcta ccgcaggacc aagggttgca acgattttta cacgtttatt
     3601 catcttaaca aaactccttt ttatttaatg gtcttatgac ccttaataac actttaatga
     3661 aatgtcaaat tagattgaca agttacggtt caattcagcc agatccaaat ctgctttatg
     3721 tggattgttc acgacaatct taccttctgc agtcaagctg aataatgctc cttcttccgc
     3781 agtaccaaga attggatttt caaccatttg ctcgttacgg atacctactg caagacctcc
     3841 acggccttct ttaagcaatt taacggcatg agcacccata cgagaagcga gtacgcgatc
     3901 acgcgctgtt ggagaaccac cacgttggat atgaccaagt tctgtcacac gaagatcact
     3961 tgtatcgcct gctgctttca attcttcagc gaactgtgca gctggcataa caccttcagc
     4021 caaaacaatg atgctatgtt tcttaccatt gtcgtagccc gctttaatac ggtcaacaat
     4081 atcgttgata ttgaagtctt cttctggaac aacgataaca tctgcaccag aagcaatacc
     4141 agcccaaaga gcgatgtctc ccgcatgacg tcccattact tcaacaacga aagtacgacg
     4201 gtgacttgat gaagtatcac ggattttatc aatcgcatcc atagcagttg ttacagctgt
     4261 atcaaaaccg attgtaaaat ctgtacctac gatgtcatta tcaattgtac caggtacacc
     4321 aatagctggg aaaccatgct ccgtcaagcg cattgctccg tggtaagaac catcaccacc
     4381 gataacaact acaccttcga taccatgttt tttcaattgc tcaatccctt taagttgccc
     4441 ttctaatttg gcaaattctg gataacgagc tgaaccaagg aatgttcctc cacgtgaaat
     4501 aatatcacct acagaacgtg cagacaattc atggatatca cccgcaacca tacctgcgta
     4561 accttcgttg attccataaa cttccattcc ttctgaaatt gcttggcgaa caactgcacg
     4621 aatagcagcg ttcataccag gggcatcacc accactggtc aaaacagcaa tacgtttcat
     4681 tcgttaatgc tcctttaact tttcatttta actgccctat tataacatac ttaacctaaa
     4741 cttgcttgac tttttgctat ttttttatcg aaaaatcgtt ttcataacaa attcacttaa
     4801 ctcttcttct aattgaggcg ttttcataac catgtggtgc ccagcctgaa ttgtctggtt
     4861 actatcttga taatgaagta ctactggaat gcttcctcta tatttatcca aaatacgagc
     4921 aacggcataa tcgtgttctc gattttccaa aagaatccaa aatttctcca aactgacagg
     4981 ctctaatttt tctagaacta attgcaactg tccatcgcgc tcttgcactc tacctgtaat
     5041 atagcccatt cccccttctt ccaaaacaga agcgtattgg cgataagatt ctgggaaaag
     5101 agtcacatca agcgtcctct tggtatctgt cactcgaaga aatgccatct gttctccagt
     5161 ctttttggta cgaatcaatc gaatagcttg aatctgcaca agaacggtcg ctcgattgcc
     5221 aaccgctaaa tcagccaaat ctgtaaaact acgcttagac tctcgacaaa tattgactaa
     5281 aggatgcgga ctaataccaa cacctagcaa ttcttgctct agcataaatt tttcactgtc
     5341 gctgtaatct tccacatctg tccaactata actctcctct gcaaaaaatg taccaattgc
     5401 ctctgcaaag acaaagagat tgtcaagatt ttcaataatc tttttacgat tggcgtcaaa
     5461 atcatcaaat aaaccaatct gaataagagg gattagtaaa tcctttttct tgaaattatc
     5521 tggcaagcgc aaaataaaat cttctacaga cttataggga cgatgatcca atatccataa
     5581 agctaaatct ttaggcaaac ctttcagtgt ttttaatcct aggtagacct tacttttatc
     5641 aaacttatcg tgataaggaa tattgttaat cgtgagtcga gctacctcaa agtcaaactg
     5701 catcgcatct tcaatataag cactgctaga atgattgagc atgacatcaa aaaagacatc
     5761 cgtatagtga ctcttgaaat aggccatttg aaaggctaag gctgaataag cataggcgtg
     5821 gctacggtta aaaccataac cagcgaactt agccatcatg ccaaatattt cccttgcatt
     5881 ctcttcagca tgtccgtttt tcagtgctcc ctgtaaaaat tccgcttcca ttgcctgcat
     5941 ttcctgggca ttctttttag acatcgccct gcggagtaaa tccgccttgc caagcgtaaa
     6001 tcctgcatag acctgtgcaa tctgcatgac ctgttcctga taaagcatga taccataagt
     6061 cggttgtaaa ataggagcaa tggttgggtc caacaaatca actgtctctt gtccatgttt
     6121 gcgttttaca aagttatccg aataatcact agcccccggt ctattcaaac tcgttgttgc
     6181 aactatatct tcaaatcgac caggtttgac ccttcgaagc aggctaatcg caccaggctg
     6241 ttcaaattga aaaattccct tagtccgacc agcagcaaaa agttccaagg ttttcttgtc
     6301 ttctaaatca atcttggcaa tatcaatttc ctgctgataa cgttcacgta ctccttctgc
     6361 cattttttgc acaaaggtca gatttcgtaa gccaaggaaa tccattttca acagaccatt
     6421 cgcctcaaca gcatgtgcat catattgggt taccagcatg tcatccccta ttttaagagg
     6481 gatggtatct gtcaagtcct catcactcat cactatccct gctgcatgga tagaagtctg
     6541 tcggggttgc ccttcaattt gttgagcaat cgcaaaagct ttttggtact ctatcttact
     6601 attgataatc tgacgaaaag cggcatttcg ctgataggca gaagtaagac tatccctaaa
     6661 tgaaattttc ttggtaatat tacttaactc atattcaggt gttccgaaac gcttaaatac
     6721 atcacgaatg gcctgcttag ctccaaaagt cgagtaggtt acaatttgcg cagcatgggt
     6781 tgaaccataa cgatctcgta cataacgaat aaaatctgct cgatgaatat ctggaatatc
     6841 aatatcaata tcgggcattg aataacgttc agcattgaga aagcgttcaa agagaagatt
     6901 atgcttaaca ggatcaatac ctgtgatatt taaggcgtag gcaactaggc ttccaacagc
     6961 tgaaccgcgc cccattccca tatagtaccc ttggctacgt ccaaaacgaa gtaggtccca
     7021 tacaatcaag aaataatcat caaatcccat ttgatgaata atggataatt ccttttccaa
     7081 acgttcttta tatagtgaat tagccaagcc cttctcttct aatccttgat aggagcgctc
     7141 gtataattct tccactgcag gtctgtcacg attaaaacgc ggcaatttta aatctgtatt
     7201 taattgataa gaaatccctg caaccaagtc acgtaaatta tcaactgctt gcggaaaccg
     7261 attagaaaat agattggtta agctatcagc cgataaaagc ttttgtcgac tatctatatc
     7321 tgcaacttga ttaagtggaa tattatctcg aatagcatgg agaacctgta gactttccaa
     7381 ttgttcctct tcaaaaaaac gaaccgtatg aattgggagt attgcttgct taaagtcttg
     7441 aactggtgta tcaaccgtca ctccgatata atagttaaca cctaactcaa ggtgctcaat
     7501 gccagaaaaa taaggaacaa ccactgctat gtcgactaaa tactggcgaa tatcttcaaa
     7561 gttatcctgt ccagtcattt ttgtagtcga tattttcaag agatttcgat agcccttggt
     7621 ggtcaaggca atcaactgag ttgtcacttc tcgctcctgc ccctccaact gccagtccaa
     7681 ttcacaacca ataattggtt gaagccccat tttgttacag gattccataa aactataggc
     7741 tgcataaaga ctgtttttat ccattatccc caatgcgtgg taaccaagct ctttagcctt
     7801 gcctacataa ttttctatcg tcaccatgct atccataaag gtatagacgg tttttgtatc
     7861 tagttgtgcc agcatggtct tctccttttt atttcttcta ttataccaaa tattctagga
     7921 aaatattttt aagaaattca atcaaaagac ttgcaattta ttatgtttta ttgtattatt
     7981 tagttagaac ataggtattg gcgaaaaatg cctagaaagg aaagaacaat ggcttggaaa
     8041 tttgacaaca atatgcccat atatattcaa atcagtaata ctataaaatt acagattgtg
     8101 accaatcaat tgaaatcggg agataaattg ccaaccgtgc gtgacttggc tgaaatagct
     8161 ggcgtcaatc caaacacggt gcaacgggcc ctgtctgatt tggaaacgga aggatttgtt
     8221 tactcagtcc gcacaacagg acgtttcgtc acagacaatc acgaattgat ttcacagacc
     8281 cgactgcatt tggcacagaa agaacttgaa aactttgtga ccaatatgct agacttgggc
     8341 ttcaatcaag atgaattaac ccaccagtta gatgattatt tgaaaggagt gtcttatgaa
     8401 taacgcatat accctggtcg aattacaaca ggtttcaaaa tcctatggcg gagctgtagc
     8461 tctcaacaat gttaacttga aattgactgc tggtaagatt attggacttt tgggaccaaa
     8521 tggttctggt aagacgacgt taatcaaact catcaatgga ctattgcaac ctgagtatgg
     8581 tcaagtcctt atcaacggtc gtactccttc acctgaaacc aaggcaattg tatcctattt
     8641 gccagatacg acctatcttg atgaaagcat gaaggtttct gatgctatca ccttctttac
     8701 agatttctat gcagattttg acaaggaacg tgccctccat ctcttgcaag atctggggat
     8761 tgacttgaac agccgcatga aacacctgtc aaaagggaac aaggaaaagg ttcagctgat
     8821 cttggtaatg agccgccaag cgcagctgta tgttttagat gagccaattg gtggtgttga
     8881 ccctgctgct cgtgattata ttttaaaaac catcgtcaac aactactctc cgactgcctc
     8941 tgttattatc tctactcact taatttcaga tgtcgagcaa attttggatg aggttatttt
     9001 ccttcaatat ggtagcgtta ttcgccatga aaacgtggat gatctccgta ttgaaagtgg
     9061 cgagtccatt gacgaactct tccgccaaga ctttaaggct tagttagaag gagattgcta
     9121 tgtttaagaa attactcaaa tatgaatttc aatccgttgg aaaatggtat ctaggaattt
     9181 atgccggggc attggcccta tctatcatac tcgggttttg gttacaagct ttgagcttac
     9241 gggcacaagc tggaagcact gaacctggtg gtgctgaaat ggtccttttc ggtacttcct
     9301 ccatgacctt cggtatctta attgcagcac ttggtttatc cacctttttc atggttatta
     9361 accgatttag aaagaatgtc tatggtcgtc agggctattt aaccatgacc ttaccggtct
     9421 ccagccatca aattatcctc agcaaactct tggcatcatt ggtttggtac atattagctg
     9481 gaattaccat tattctttct attggaatca ttttagcggt cctcatgctc ggaagtgaag
     9541 aattcatgat tcctgaattg catactgttg tacaagcatt agactggcct gtcatatttg
     9601 cacatctatt ctatatgctg attgagtcaa caatgggaat cttgctgatc tacttctcca
     9661 tctcagtcgg tcaattgttt aaagaccacc gtcttctgtt tgccattttg acctatattg
     9721 gtatttcaat tgtagttggt gtgtttggaa ctctcgtttt taccaattat ctagagaacc
     9781 tttattatgc cgcgctacca ttatacccaa gtcctatctt ggccttgatc aatatcattc
     9841 tggcctttgc ctactatttt ggtacacact ttatcatgac caagaaattg aatttgcaat
     9901 aagaaaaagc tctttgccgg tcgttttgac atggcctaga gctttctttt tacaaattat
     9961 acttttgagc taggacatca agtaagttcg ccttttcttc ttcactggca aagcttgctt
    10021 gaatagcatt tctgttgaat tgataaaatt cttccttggt agttccaaaa tactctacaa
    10081 atagctgata ttctctatta agtgtagtat tagaaacggt acgattatct gtgttgattg
    10141 tgatgtttgc tcctgcctca actagctcac gatatggaaa atgttcaatc gaatcagctg
    10201 caccagtttg aagattcgat gttagacaca tctcaagcgt tgctccgcta ttgacaaaag
    10261 cctgaatagc ctcagcgtga ccgctaagag ccgttccgtg tccaatccgc ttgataccca
    10321 aggtcagagc ttgagctaca ttggtcacgc aaccacactc accagcatgg aaggtcatgg
    10381 ggtaacctag aggttgtgtg tagtcaatca actcagccag ctcatgagtt gggtagtctg
    10441 cctcgtttcc agcaaaatca aacccgacca atccttctgg tgccagatcg acaatagcag
    10501 aaaagatttc tctggtctga cttggatcag tttgtttcaa gccacagacc aagagcttgg
    10561 caactatacc aaattctttc tgagcctttt ccatcccacg caagacggct ttcacagctt
    10621 ccaggatagt caaacccttg tcagtcgata attctggtgc aaaacgaagt tcaatataga
    10681 gaactccatc ctctgatgct tgacctagaa catcggaggt tgctatttcc agcgcttcct
    10741 cagtttgtag aagaggtcga acaaagtcaa atgttttcaa ataggtcatc aggctatcaa
    10801 ccttaccatc gatgctgacc aattttctga gttcctcatc cttgtctgga atggaaatct
    10861 ctgccagttg ggcaagttgt cggattgccg ataaagatag ggaaccatcc aaatggcaat
    10921 gcaattctgt cttggctaat tcttgtacat tcaacatcaa caattcctct ttcgtaagta
    10981 tattgttaac tatcatatca catttttgat aaattacaag ataattttcg caaaaaatga
    11041 acattattct tattagatag tttcaagtgc aagaaaaaaa gaacgatttt catcgttctt
    11101 gccatacgga agacatggga ttcgaaccca cgcacgctgt tacacgccta ccgcgtttcc
    11161 aacacggcct cttgagcctc ttgagtaatc ttccatatat ggagctggtg ggagtcgaac
    11221 ccacgtccaa acacctgcta acttattcgt ctacaaccat aggttatgtc ttgctttaac
    11281 ttgaactcga tacataactc aaacctagac caagcgagtc agtaaatctc ttttggaact
    11341 gcctgactca atcccaacgt agcttgctat tttaagacca atcagcaaac acaagcaatt
    11401 cgcgactggt cacgcaggca ggttattaag ctgctaatgc gtaagtgttt gtattttttg
    11461 cagttatatt taactggcat ttttacatct gccgatgagt tgcagaacaa gcctcataat
    11521 gcctgtcgaa tccgtaacaa ccccgtagga tttgatacag gaattattat agcagaattt
    11581 tttataaata gcaaaattat tttacatttt ccttacaatt taaaaaaaat ttgaaatatg
    11641 gtaaaatgaa agtatgtata aattttggca aaaaaccatt caagtattaa gtattttgac
    11701 ccttatcggg accgctattt ttctgttttg gctctataag attggcattt tgaacgacca
    11761 aaatgtctta agcgatttaa tcaaaagcca aggtgcttta ggtagcctct cctttttagc
    11821 tattcagatt attcaagttg tatttccgat tattccaggc ggtgttacga ctgttgtggg
    11881 tttcctcgta tttcattttt ggtggggatt ctttctcaat tatcttggaa tttcaatcgg
    11941 tagtatcatc cttttctggt tggctcgtcg ctatggaaag aaattttgtc tcctcttcat
    12001 gtctgaagat acgttttaca aatatgaaag caaaattgat aataaacgta gttatgaaat
    12061 tttctttatt ctctgcatgc tttctcccat ttctccagct gacatagtgg tgatgattac
    12121 tggattaacg agcatgagtt atcggaaatt tattatgatt actttacttt gtcgcccttt
    12181 ctcagttgtg gcctatagct tcttttggat ctatggcagc caatggttgc agcaattgtt
    12241 aggataaaat cataaccacc cgtgaaaacg ggtggcttgt acaccggcta taagccgttt
    12301 ctctccagcg acgtctaaag acgttcgctg aacttcgttc aggttagtgc tataattact
    12361 tgactaaagc ccgtaacaac gggcttttat cttgttctaa aactactatc tgaaaatgaa
    12421 tcttcatatt ctttaacact taacttatca agtgcgatgt catttttctc ctgctcgcga
    12481 atatatttcg ctaccgtctt ttcgttcagt ccaacgatac tcacatagta gcctctagcc
    12541 caaaactttc gatttccata cttatatttt aaattagcat gtttatcaaa tatcatgaga
    12601 gcacttttac ttttcaaata tcccataaaa tcggaaatcg aaagttttgg ggatatcaag
    12661 acaagcatat gaacatggtc tggcatcatg tgtccctcaa tgatttccac cacaccaaac
    12721 gcatgaagaa aaaaacgttt tcagaaagcg aaaatcataa ccaaa
//
LOCUS       DASFRC010000056        12761 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.056, whole genome shotgun sequence.
ACCESSION   DASFRC010000056 DASFRC010000000
VERSION     DASFRC010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 12761)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12761)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12761
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.056"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            99..1931
                     /gene="lepA"
                     /locus_tag="U1087_001105"
     CDS             99..1931
                     /gene="lepA"
                     /locus_tag="U1087_001105"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017645216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HEM4755589.1"
                     /translation="MNLEDLKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSRE
                     MQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFTYEVSRSLA
                     ACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPIINKIDLPAADPERVRQEIEDVI
                     GLDASEAVPTSAKAGIGIEEILEQIVEKVPAPTGDVEAPLQALIFDSVYDPYRGVILQ
                     VRIVNGVVKPGDTIQMMSNGKTFDVTEVGIFTPKAIGRDYLATGDVGYIAASIKTVAD
                     TRVGDTVTLAENPASEPLAGYKQMNPMVFAGIYPIDSNKYNDLREALEKLQLNDASLQ
                     FEPETSQALGFGFRCGFLGLLHMDVIQERIEREFNIDLIMTAPSVVYHVNMTDGEMID
                     VANPSEFPDPTKIATIEEPYVKAQIMVPQEYVGAVMELAQRKRGDFVTMDYIDDNRVN
                     VIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRSSKLVKMDILLNGDKVDALSFI
                     VHKEFAYERGKIIVDKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGG
                     DVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDEDDKK"
     gene            complement(1981..2163)
                     /locus_tag="U1087_001106"
     CDS             complement(1981..2163)
                     /locus_tag="U1087_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019320686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase"
                     /protein_id="HEM4755590.1"
                     /translation="MPFVRIDLFEGRTEEQKIALAREVTEVVSRNTNAPKEAIHVFIN
                     DMPEGTYYPQGEMKRK"
     gene            2298..3605
                     /locus_tag="U1087_001107"
     CDS             2298..3605
                     /locus_tag="U1087_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excalibur calcium-binding domain-containing
                     protein"
                     /protein_id="HEM4755591.1"
                     /translation="MFKKKATQIVSETSIKKSRKFLNRKTAGITGGILLTTFIGSQLM
                     TAELPKKDDLYGQQYVTVVKHLQEAGFKNIQGVELSDLEFGKIGESNLVELVSVDGED
                     WKEGRALKNIPITISYHVPKKDAVEFNLPASKNLADVEKELKDSGFKQVELTPVLLVE
                     EGNADKKDKIDRLQIGNHTYQSNHFYSTSLPVTLTYFDVSKDNIKLPENLAEAKTKPE
                     LEKQLKTAGFTDIKWTAVADKDKAKHEKIQKINLGGAEIQLPTKQEIISKKSTPIVIT
                     YYDFSSFAELPSSISTKTATDTKKLFTDGGFSQVSEVATETNEIAKNGQIIAVEIDGK
                     SFNEMNDTVIKKDSKVIIKYWNAEKAIAEKARKEEEERLAAEAQKVAEAQSQVQQFAA
                     TPSQNTYYPNCKAVRQAGAAPIYRGEPGYGSHLDRDGDGVGCE"
     gene            3667..3891
                     /locus_tag="U1087_001108"
     CDS             3667..3891
                     /locus_tag="U1087_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755592.1"
                     /translation="MAYKYRMILSFLLAGLCLYLVATVFAKSIWEGPLFLAFSFYSLI
                     YGCVMLYKWKPTAAKIIFQCIGEFLSLPWS"
     gene            3990..4571
                     /locus_tag="U1087_001109"
     CDS             3990..4571
                     /locus_tag="U1087_001109"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HEM4755593.1"
                     /translation="MAQLYYKYGTMNSGKTIEILKVAHNYEEQGKPVVIMTSALDTRD
                     AFGVVSSRIGMRRDAVAIDDDMDIFGFIEKMEPRPYCVLIDEAQFLRRHHVYALARVV
                     DELDVPVMAFGLKNDFRNELFEGSQHLLLLADKLDEIKTICQYCSKKATMVLRTQDGK
                     PTYEGEQIQIGGNETYIPVCRKHYFSPEIKELP"
     gene            4852..5931
                     /gene="prfA"
                     /locus_tag="U1087_001110"
     CDS             4852..5931
                     /gene="prfA"
                     /locus_tag="U1087_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001028822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HEM4755594.1"
                     /translation="MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEAATR
                     DTVTAYREYKTVLQNMVDAEEMIKESFGDADLEEMAKEELKQAKADKEAYEEKLKILL
                     LPKDPNDDKNIILEIRGAAGGDEAALFAGDLLTMYQKYAEGQGWRFEVMEASYNGVGG
                     IKEVVAMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLIMPEVEEVEYDI
                     DPKDLRVDIYHASGAGGQNVNKVATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIR
                     ARVADHFAQIAQDEQDAERKSTIGTGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTIL
                     SGKMDEVVDALVLYEQTQKLEELNK"
     gene            5931..6764
                     /gene="prmC"
                     /locus_tag="U1087_001111"
     CDS             5931..6764
                     /gene="prmC"
                     /locus_tag="U1087_001111"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HEM4755595.1"
                     /translation="MNYAQLFAAYEEQLVAIGEEAESLSFTFRGLKGLNFTEFLLLLR
                     QEVTPTDKEEIDAIFQQLSQHRPAQYIIGKADFHGLEFAVDERVLIPRPETEELVDLI
                     LQENSRAGLRILDIGTGSGAIAISLAKARPDWEVVAVDISNDALAVAQENARTNQVSV
                     HFLESDVLQAVTGKFDIIVSNPPYISPDDTDEVGLNVLTSEPHLALFAEEDGMAIYRQ
                     IAEQAGAFLKEKGKLYFEIGYKQGQDLTDLLALHFPKKRIRVLKDQFGQDRKVVADDN
                     G"
     gene            6751..7359
                     /locus_tag="U1087_001112"
     CDS             6751..7359
                     /locus_tag="U1087_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HEM4755596.1"
                     /translation="MTMDKLRTILENGGAVILPTETVYGLFAQALNEDAVNRVYQLKQ
                     RPRDKAMNLNVSNLNDIYFFSQNTPFFLEKLYNRFMPGPLTIILKANENVPFWVNSGL
                     DTVGFRLPNHEQTLRLISEAGPLIGPSANISGNESGKKFSDIQAQFSVDLPGIEDDQA
                     LTGIDSTILDLSGQKARILRQGAISREEIQKAIPEIEFEVVL"
     gene            7356..7787
                     /locus_tag="U1087_001113"
     CDS             7356..7787
                     /locus_tag="U1087_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM4755597.1"
                     /translation="MIRPIEKSDLIVIREINAQSLGYDCSLEQTERQFFRCTSTLGHI
                     LLVYIDDISGAVQGYIHAQVYESLYSDTGLNILGLAVLPGHQGQGIGASLLKAVEQIA
                     QKEGYHFIRLNSAESRLKAHLFYEKNGYHSDKMQKRFIKHI"
     gene            7811..9070
                     /locus_tag="U1087_001114"
     CDS             7811..9070
                     /locus_tag="U1087_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011836954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HEM4755598.1"
                     /translation="MIFDKVNYKEFDKEVWEAIQAEEKRQQNNIELIASENVVSKAVM
                     AAQGSILTNKYAEGYPGRRYYGGTECVDVVESLAIERAKEIFGAKFANVQPHSGSQAN
                     CAAYMALIEPGDTVMGMDLAAGGHLTHGASVSFSGQTYNFVAYNVDEETGLLDYDAIL
                     KQAKEVQPKLIVAGASAYARTIDFAKFREIADAVGAKLMVDMAHIAGLVAAGLHPNPV
                     PHAHITTTTTHKTLRGPRGGLILTNDKELIKKINSAIFPGIQGGPLEHVIAAKAVSFK
                     EVLDPAFKDYAQKVIENSKAMAEVFLANPNFKVITGGTDNHLFLVDVTKVVENGKVAQ
                     HLLDEVNITLNKNSIPYEKLSPFKTSGIRIGSAAITARGFGVEEARKVAQLTIKALEN
                     AENETALEEVRQEVRALTDQFPLYEGL"
     gene            9070..10044
                     /locus_tag="U1087_001115"
     CDS             9070..10044
                     /locus_tag="U1087_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006153495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein"
                     /protein_id="HEM4755599.1"
                     /translation="MDIFVKKAIIHQFSPDDTELVISDQLLTVSPKIEEYLRKKIERV
                     FSDEAKTGQFNPDNPFLDYLDGDLLTNSVKIANLWKEEFSISENLKTNDLIFIEFERN
                     GVEHFAFLRISLRENLAHVGLESGSPLKITQNNLPGAGSAPDEALIVNLQTRKYHLIE
                     KRIKHNGTFLNYFSDNLLQVTPAISAKKSIKAVEQTAQKIADNFHQGDFQFQSKVKSA
                     IFNNLEEDNELSPEKLADQLFDNNLTARLNFVDQLKEVIPDKISFDEIDSSRQLKKFE
                     NQKLSLSNGIELIVPNAIYEDAESVEFIQNDNGTYSILIKNIEDIKSK"
     gene            10045..10644
                     /locus_tag="U1087_001116"
     CDS             10045..10644
                     /locus_tag="U1087_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme family protein"
                     /protein_id="HEM4755600.1"
                     /translation="MKKLIRTLILLLLIFLGYKFYQTYSAVKQVMTYQTMVQEVLAEN
                     DTPANEELVLAMIYTETKGQEADVMQSSESATGYANTITDSRESIRQGIIYLTENLRL
                     AEEKGVEVWTAVQAYNFGPAYIDYIAEHGGEHTLSLAKEYSRTVVAPSLGNTTEETYT
                     YFHPLALLNGGKLYVNGGNIYYARQVRFNMHLMRLINLF"
     gene            10745..11503
                     /locus_tag="U1087_001117"
     CDS             10745..11503
                     /locus_tag="U1087_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEM4755601.1"
                     /translation="MKRNVLITGASSGIGKAIAYVFAANGDNIIITGRRLDKLEEIKQ
                     DIEKQYHVQVSVHSFDVTNMEQTIVNCQKILEEVGQIHILVNNAGLALGLDKFQDYDL
                     TDMMTMIDTNIKGLLTVTRQLLPQMVENNEGHIINIGSTAGIYAYAGAAVYAATKSAV
                     KVLSDGIRIDTIDKNIKVTTLQPGIVETDFSQVRFHGDKERAASVYQGIDALQANDIA
                     SCTLFVANQPAHVQISDMTIMATKQATGFTIHRD"
     gene            11520..12269
                     /locus_tag="U1087_001118"
     CDS             11520..12269
                     /locus_tag="U1087_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor 1 (IF-1)"
                     /protein_id="HEM4755602.1"
                     /translation="MNRKYLALALGLLTIMSLSACQTEKKGSSASSSTADTQVPNANT
                     STSSTVQREISLSSMDIDALMQGNYDSILGTWQNSQGNSLVFNSKGLVADSQSLLGRG
                     KITDGIFETGYVDATIGDVTLLMIPKGTQANTTEIDTTDSTRDRMIVISQETTADVVD
                     VYYRLTNSATSGIDPLKNTETGVQLDSGPKTIDYANSILGENNWRVIEGNYTRTESIP
                     YNVLEGDDNARYTIYQNGVIINADYQIVYQP"
     gene            12291..12644
                     /locus_tag="U1087_001119"
                     /pseudo
     CDS             12291..12644
                     /locus_tag="U1087_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943204.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HIRAN domain-containing protein"
BASE COUNT         4074 a         2529 c         2682 g         3476 t
ORIGIN      
        1 tagcagagca gacacctagt tttctaggtg tttttcttat ggaaaattat cactaaatct
       61 gatataatga ggagtaatac ccttgtagag gaagaaacat gaatttagaa gatttgaaaa
      121 aacgacagga gaaaattcgt aatttctcca ttattgccca catcgaccat ggtaaatcaa
      181 ccttggctga ccgtattctt gagaagacag aaacagtttc cagccgtgaa atgcaagccc
      241 agttgctaga tagtatggac ttggaacgcg agcgtggtat cacaattaaa ctcaacgcaa
      301 tcgaactcaa ctatacagct aaagatggtg agacatacat tttccacttg attgacacac
      361 caggacacgt ggattttacc tatgaggtat cgcgttctct tgcggcctgt gaaggggcga
      421 ttctggtggt ggatgctgct caagggattg aagcacagac cttggctaac gtttatctag
      481 ccttggacaa tgatttggaa atcttgccaa tcattaacaa aattgaccta ccagcagcag
      541 acccagaacg tgttcgtcag gaaatcgaag atgtgattgg tttggatgct tctgaagcag
      601 tgccaacatc agccaaggca ggtattggta tcgaggaaat cttggagcag atcgtggaga
      661 aggttccagc accgactggt gatgtcgaag ctccattgca agccttgatt tttgactcgg
      721 tttacgatcc gtatcgaggc gttatcctgc aagttcgtat tgtcaacggt gtggtaaaac
      781 ctggcgatac tattcagatg atgagcaatg gcaagacctt tgatgtgacg gaagtgggta
      841 tcttcacacc aaaagcaatc ggtcgtgatt acttggcgac tggtgatgta ggttacattg
      901 cagcctccat caagacagtt gcagataccc gtgtcggtga tacagtgacc ttggcagaaa
      961 atcctgccag cgagccacta gcgggctaca agcagatgaa cccaatggtc tttgccggta
     1021 tctatccgat tgattccaac aagtacaatg acctccggga agccttggaa aaactccagc
     1081 taaacgatgc cagcttgcag tttgaaccag aaacatcgca agcactcgga tttggtttcc
     1141 gttgtggatt cttgggcctc ttgcacatgg atgttatcca agaacggatt gagcgtgagt
     1201 ttaacattga cctcatcatg acagcaccgt cggtggttta ccatgtcaac atgacggacg
     1261 gtgaaatgat tgatgtagcc aacccatccg aattcccaga cccaaccaag atcgccacta
     1321 tcgaagagcc ttacgttaag gcacaaatca tggtaccaca ggaatacgtc ggtgcagtca
     1381 tggaattggc ccaacgcaaa cgcggtgact ttgtgactat ggattacatc gatgataatc
     1441 gtgtcaatgt catctaccaa attccacttg cggagattgt ttttgacttc tttgataagc
     1501 ttaagtcatc cactcgtggt tatgccagct tcgactatga gatttctgaa taccgttcat
     1561 ccaagttggt gaaaatggat attctcctca atggcgataa ggtcgatgct ctcagcttta
     1621 tcgtccacaa ggaatttgcc tatgaacgtg ggaaaattat cgtggacaaa ctcaagaaaa
     1681 tcattccgcg tcaacagttt gaagtgccaa tccaagctgc tatcggtcag aaaatcgtgg
     1741 cccgtagcga catcaaggcc cttcgcaaaa acgttttggc caagtgttat ggtggtgacg
     1801 tttcccgtaa acgcaaactc ctagaaaagc aaaaagctgg taaaaaacgg atgaaggcca
     1861 tcggatctgt cgaagtccca caagaagctt tcctcagtgt tctcagcatg gatgaagacg
     1921 ataagaaata aacttgacac aaagaaacac tcctgcattt tgttgcaaga gtgttttctc
     1981 ttattttcgt ttcatttcac cttgtgggta gtaggtccct tcaggcatat cattgatgaa
     2041 gacatgaatg gcttctttgg gcgcattagt attacgagat acaacttcgg taacttcacg
     2101 tgctaaggca atcttttgtt cttctgtgcg tccttcaaac aaatcaatac gtacaaatgg
     2161 catatatttc ctcctttatt tttcgtttat tgtaccatag tttttatgat tctccaagga
     2221 tattttcata agatattgca aaatatattt atattttgtt ataataatat cacaataaac
     2281 aataaggaga atgatttatg tttaagaaaa aagcaactca gatagttagc gaaacgtcaa
     2341 ttaaaaaatc tagaaagttt cttaatcgga aaacagcagg aataactggt ggcatcctac
     2401 ttacaacatt tatcggttca caattaatga ctgctgagct tccaaaaaaa gatgaccttt
     2461 atggacaaca gtatgtaaca gtcgtaaaac atcttcagga agcaggtttt aaaaatattc
     2521 agggggtgga acttagtgat ttagaatttg gaaaaatagg tgaaagcaat cttgtcgaac
     2581 tcgtctctgt tgacggagaa gattggaagg aaggacgtgc tttaaaaaac atcccaatta
     2641 caatctccta ccatgttccc aaaaaagatg ccgttgaatt caacctacca gcttctaaaa
     2701 atttagcaga tgtcgaaaaa gagctgaaag attcaggttt taagcaagtc gaactaactc
     2761 ctgttctgct agtagaagaa ggcaatgcgg acaaaaaaga taaaattgat cgccttcaaa
     2821 tcggaaatca cacctatcaa tccaatcatt tttactctac tagtctccct gttacattaa
     2881 cctattttga cgttagcaaa gataacatca aactaccaga aaatctagca gaggctaaaa
     2941 caaaaccaga gctcgaaaaa caactaaaaa cagcaggatt tacagacatc aagtggactg
     3001 ctgttgcaga caaggataaa gcaaagcacg aaaaaattca aaaaattaat ctaggtggtg
     3061 cagagattca attgcccacc aaacaggaga ttatcagcaa aaaatcaacc ccaattgtga
     3121 ttacctacta cgatttctct agcttcgctg aactgccatc atccatttca acgaaaacag
     3181 ctacagatac taaaaaattg tttaccgatg gtggtttttc tcaagtatct gaagtagcaa
     3241 cagagaccaa tgaaattgct aaaaacggac aaatcattgc ggtcgagatt gatggaaaat
     3301 cttttaacga gatgaacgat acggtcatca aaaaagatag caaagtcatt atcaaatatt
     3361 ggaatgctga aaaagctatt gctgagaaag cacgtaaaga ggaggaagaa cgcctcgctg
     3421 ccgaagcgca aaaagtagca gaagcacaaa gtcaagttca gcaatttgct gctacaccat
     3481 ctcaaaacac atattatcca aattgtaagg cagttagaca agcaggagct gcaccaatct
     3541 atcgtggaga accaggttac ggtagtcatt tagaccgtga tggagatgga gttggatgcg
     3601 agtaagaaaa aacattgaca acgtttacat tgcatgctat actgctctta taaggaggga
     3661 ttactcatgg cctataaata ccgtatgatt ttatcgttcc tactcgctgg attatgtttg
     3721 tatctagtag caactgtttt tgccaagagt atctgggaag gaccgttgtt tcttgcattt
     3781 tctttttaca gcctgatata tggttgtgtt atgctctaca agtggaaacc aacggcagct
     3841 aaaatcattt tccaatgtat tggagaattt ctctctttac catggtctta atatcaaaca
     3901 agctcaaaac gggcttgttt ttctatttcc taaatggtca atttatgata gaatggaagg
     3961 agtgaaaatt taagattgga aagagaaaag tggctcaatt atattataaa tatgggacaa
     4021 tgaactcagg aaaaaccatt gagattttga aggttgccca caactatgaa gaacaaggaa
     4081 aacctgttgt tatcatgaca tctgcacttg atactcgtga tgcctttggt gttgtatcca
     4141 gtcgtattgg catgagaaga gatgcagtgg cgattgacga tgatatggat atctttggtt
     4201 ttattgaaaa aatggaaccg cgtccttact gtgttctcat tgatgaagca caatttcttc
     4261 gacgtcatca tgtctacgca cttgctcgcg tagtcgatga attagatgta cccgttatgg
     4321 ctttcggtct taaaaatgat ttccgaaatg aactatttga aggttcccaa catttgctct
     4381 tattggctga taaattagat gaaatcaaaa caatctgcca atattgttct aaaaaagcga
     4441 caatggtttt gagaacacag gatggaaaac ctacttatga aggagaacaa atccaaattg
     4501 gtggcaatga aacctacatt cctgtctgtc gcaaacatta tttttcacca gaaattaaag
     4561 aattacccta atttttgaaa atgaaatgag aagcgactgt aaattgagca actgtataga
     4621 actgaatttg cctatgactc tgtgccaatt ttcatgactt acatactacg gcaaaggaat
     4681 tgaacacgcc ctacaagcta actagaagtg tgttctgtca aatatttaga aaggaattga
     4741 atacgggcta cgaactgtgc aaaaaagata gtttttccta ggacgctttc gtccttcgtc
     4801 aaaactccta tttttgcttt gttcgtttaa cgcccttaat atcttaaaat tatgaacatc
     4861 tacgatcaat tacaggcggt ggaggaccgc tacgaggaac ttggtgaatt gttgtctgac
     4921 cctgatgtag tcagcgatac caagcgtttt atggagttgt ctaaggaaga agctgcaact
     4981 cgtgatacag taacagccta ccgcgaatat aagactgtac ttcaaaacat ggtcgatgca
     5041 gaagagatga ttaaagaatc ctttggcgat gctgatttgg aggaaatggc taaggaagaa
     5101 ctcaaacaag ctaaggctga taaagaggct tacgaagaaa agctgaaaat ccttctttta
     5161 ccaaaagacc ctaacgatga caaaaacatt atcttggaaa tccgtggtgc cgcaggtggt
     5221 gatgaagccg ccctctttgc tggagacctt ttgaccatgt atcaaaagta tgcagaaggt
     5281 caaggctggc gttttgaagt catggaggct tcttataatg gtgtcggcgg tatcaaggaa
     5341 gtggttgcca tggtctctgg tcaatccgtt tattcaaaac tcaagtatga atcaggagct
     5401 caccgtgtcc aacgtgtccc tgtgacagaa agccaaggtc gtgtccacac ctcaacagca
     5461 actgtcctca tcatgccaga agttgaagaa gtggaatatg acatcgatcc aaaagatctt
     5521 cgtgtcgata tttaccacgc ttctggtgct ggtggacaga acgtcaacaa ggttgcaact
     5581 gccgtgcgta tcgttcactt gccaaccaac atcaaggtag aaatgcagga agagcgtact
     5641 cagcagaaaa accgtgaaaa agctatgaag attatccgtg cccgtgttgc ggatcacttt
     5701 gcacagattg cccaagatga gcaggatgct gagcgtaaat caactatcgg tacaggtgac
     5761 cgttcagagc gtatccgtac ctacaacttt ccacaaaacc gtgtgacaga ccaccgtatc
     5821 ggcttgacct tgcaaaagct cgataccatc ttgtcaggta agatggacga agtcgttgat
     5881 gcccttgttc tctacgaaca gacgcaaaaa ctagaagagc ttaacaaata atgaattacg
     5941 ctcaattatt tgcagcatac gaagaacaat tagtcgcaat cggtgaagag gcagagtctc
     6001 tgtccttcac ctttcgtggc ttaaagggat tgaactttac ggaatttctc ctcctgctcc
     6061 gtcaggaagt cacaccgact gacaaagaag agattgatgc gatttttcag caactttccc
     6121 aacaccgacc tgcccagtac attatcggca aggctgattt ccatggcttg gagtttgcgg
     6181 tggatgagcg agtcttgatt ccaagacctg aaacggaaga attagttgat ttgattttgc
     6241 aggaaaatag cagagcaggt ttgcgtatct tagacatcgg tacaggaagc ggtgccatag
     6301 ctatttccct tgcaaaagct agacctgatt gggaagtggt agcggttgac atttcaaatg
     6361 atgccctagc agtggctcag gaaaatgcaa gaaccaacca agtctctgtt cactttctag
     6421 aatcggatgt cttgcaagca gtgacaggga aatttgacat cattgtttct aatccgccct
     6481 atatctcacc agatgacaca gatgaagttg gactcaatgt attgacttct gagcctcatc
     6541 tggccttatt tgcggaagaa gatggcatgg ctatctatcg acaaattgcg gagcaagcag
     6601 gggcattttt gaaggaaaaa ggaaaactct actttgaaat cggctacaag caagggcaag
     6661 atttaaccga cttactcgct ctgcatttcc ccaaaaagcg aattagagtc ctcaaagacc
     6721 aatttggaca ggatagaaag gtcgtagcgg atgacaatgg ataaactccg aacaattctt
     6781 gaaaatggtg gtgctgttat ccttccaact gaaacagtct atgggctttt tgcccaagcc
     6841 ttgaatgaag atgcagtcaa tcgtgtctat cagttgaaac agcgtccgag ggacaaggca
     6901 atgaacttaa atgtctcaaa tctgaacgat atttattttt tcagtcaaaa tacaccattt
     6961 tttctggaga aattgtataa tagatttatg ccaggaccac taacgattat cctgaaagca
     7021 aacgaaaatg ttcctttttg ggttaattct ggactggata ctgttggatt tcgtcttccc
     7081 aatcacgaac aaaccttacg tttgatttca gaggctggcc cacttattgg accttccgcc
     7141 aatatttcag gaaacgaaag cggcaagaag ttttcggaca tccaggcaca attttcagtt
     7201 gatttgcctg gcattgagga tgaccaagct ctaacaggca ttgattcaac gattttggac
     7261 ctttctggac agaaagcgcg gattttgcgc caaggcgcta tcagccgcga agagattcag
     7321 aaagccattc ccgaaataga atttgaggta gttttatgat tcgtcccatt gagaaaagtg
     7381 acttgatagt catccgagaa atcaatgctc aatccttagg gtatgattgt tcattggaac
     7441 aaactgagcg acaatttttt agatgcacga gtacattggg gcatatcttg ttggtgtata
     7501 tagatgacat aagtggcgca gtgcaaggct acattcacgc acaagtctat gaaagtctct
     7561 attcggatac aggcctcaat attctcggac tagctgtttt gcctggtcat caaggacaag
     7621 ggattggagc aagcctgctg aaagccgttg agcagattgc acagaaagag ggctaccatt
     7681 ttattcgcct caattctgct gaaagtcgtc tcaaagccca tcttttctac gaaaagaatg
     7741 gctatcactc cgataaaatg cagaagcgtt ttatcaagca catttagccc aatacaaagg
     7801 agtaccgtat atgatttttg acaaagttaa ctacaaagaa tttgataaag aagtttggga
     7861 agctatccaa gctgaagaaa aacgccagca aaacaatatt gaattgattg cgtctgaaaa
     7921 cgttgtttct aaagctgtta tggcagctca aggttctatt ttgaccaata aatacgcaga
     7981 aggttaccca ggtcgtcgtt actatggcgg tacggaatgc gttgacgtag ttgaaagttt
     8041 agctattgaa cgtgctaaag aaatattcgg tgcaaaattt gctaacgttc aaccacactc
     8101 aggaagccag gccaattgtg ctgcctacat ggccttgatt gagccaggag acactgttat
     8161 gggaatggac ttagctgcag gtggtcactt gactcacggt gcatcagtta gcttctcagg
     8221 acaaacttac aactttgtag cttacaatgt tgacgaagaa actggcttgc ttgattacga
     8281 tgcaatttta aaacaagcaa aagaagtaca gccaaaattg attgtagcag gtgcttcagc
     8341 ctatgcacgt acaattgact ttgctaaatt ccgcgaaatt gcagatgcag tgggtgccaa
     8401 actgatggtg gatatggctc atattgctgg tcttgtagca gcaggtcttc atccgaaccc
     8461 agtgccacat gcccatatta caacaactac aactcataaa acgcttcgtg gtcctcgtgg
     8521 tggattgatt ttgacgaatg acaaagaact tattaagaaa atcaactcag ccattttccc
     8581 tggaattcaa ggtggtccac tagaacatgt cattgctgca aaagccgtat ctttcaaaga
     8641 agttttggac ccagctttca aagactatgc tcagaaagtg attgagaaca gcaaggccat
     8701 ggccgaagtc ttccttgcaa accctaactt taaagtcatc acaggaggaa cagacaacca
     8761 tctcttcctt gttgacgtga ccaaagttgt tgaaaatggt aaagttgctc agcatctctt
     8821 ggatgaagta aatattactc tcaataaaaa ctcaattcct tacgaaaaac tctcaccatt
     8881 caaaacaagc ggtatccgta ttggctctgc ggccattact gctcgtggtt ttggagtcga
     8941 ggaagctcgc aaggttgcac aactaactat caaagcactt gaaaatgcag aaaatgaaac
     9001 cgctcttgag gaagtccgtc aagaagtgcg tgctttgaca gatcaattcc cactttacga
     9061 aggtttataa tggatatatt tgtaaaaaaa gccatcatac atcaatttag tcctgatgat
     9121 acagagctgg tcatttccga ccagcttttg actgttagcc caaaaataga agaatatttg
     9181 cgtaaaaaga ttgaacgtgt cttttctgat gaagcaaaaa caggacaatt taaccccgat
     9241 aatccttttc ttgactattt agatggtgac ctactgacca actctgtcaa gattgctaat
     9301 ctatggaaag aagaattttc aatttctgag aatttaaaaa ccaatgacct cattttcata
     9361 gagtttgaac gaaatggtgt tgaacatttt gcctttttga gaatctcact gcgtgaaaat
     9421 ctcgcccacg ttggtcttga aagcggaagt cctttaaaaa tcacccagaa taatttacct
     9481 ggagcaggtt cagcacctga tgaagccttg attgtcaatc ttcaaacgcg gaagtatcat
     9541 ttgattgaga aaagaatcaa acacaatgga accttcctca attatttctc agataatctt
     9601 ctgcaagtta caccagctat ttctgcaaaa aaatcaatca aagcagtaga gcaaactgca
     9661 cagaagattg ctgacaattt ccatcaaggc gattttcaat ttcaatcgaa agtcaagtca
     9721 gctattttca acaatttgga agaagacaat gagctttcac ccgaaaaatt ggctgatcag
     9781 ttattcgata acaacctgac cgctcgttta aatttcgtcg atcaactgaa agaggtcata
     9841 cctgataaga tttccttcga tgaaattgat agtagccgtc aacttaagaa atttgaaaat
     9901 cagaagctat ctttatcaaa cggaattgag ttgattgtgc caaatgcaat ctatgaagat
     9961 gcagaatcgg ttgagtttat tcaaaatgac aacgggacct attctattct tatcaaaaat
    10021 attgaagaca taaagagcaa gtaaatgaaa aaactgatac gtacgctgat acttctttta
    10081 ctgatttttc tcggttacaa attctatcaa acctacagtg cagtcaagca agtgatgacc
    10141 tatcaaacta tggtacaaga agtattggct gaaaacgaca caccagctaa tgaagaacta
    10201 gtcctagcaa tgatttacac agaaaccaag ggacaagaag cagatgtcat gcaatcaagc
    10261 gagtccgcta ctggctatgc taacactatc acggatagta gagagagtat caggcaagga
    10321 attatctacc tgacagaaaa cctacggttg gctgaggaaa aaggagtaga ggtttggaca
    10381 gcagttcagg catataattt cggtccagcc tatattgact atattgctga gcatggtgga
    10441 gaacatactc tctctttagc taaagaatac tccagaacag tagtagcacc aagcttaggg
    10501 aatactacag aagaaacata tacctatttt catcccttgg ctttgctaaa tggtgggaag
    10561 ttatatgtaa atggtggaaa tatctactat gctagacagg ttcgttttaa tatgcacctg
    10621 atgcgcctca ttaatttatt ttaataccta tcaaactcat cggaaatctg atgagttttt
    10681 aactacagca tttttacaaa ctaggtaaaa ttgtagtata ataaagagaa taggagacag
    10741 agtgatgaaa cgaaatgtat tgattacagg tgcaagtagt ggcattggca aagcaatcgc
    10801 ttatgtgttt gctgctaatg gtgataatat catcattaca ggacgaagat tggacaaact
    10861 agaagaaatt aagcaagata ttgaaaagca ataccatgtt caggtatcag ttcattcatt
    10921 tgatgttacg aatatggaac aaacgattgt aaattgtcaa aaaatcttag aagaagttgg
    10981 acaaattcat attttggtaa acaatgctgg cctggcattg ggattggaca aattccaaga
    11041 ctatgatttg actgacatga tgacaatgat tgataccaat attaaaggat tactaactgt
    11101 gacacgtcag ttattgccac aaatggttga aaataatgag gggcatatta tcaatattgg
    11161 atcaacggcc gggatttacg cctatgcagg agctgctgtc tatgctgcaa ccaaatcagc
    11221 tgtcaaggtg ctttcagacg gtatccgtat tgacacgatt gataaaaata tcaaggtaac
    11281 tacgttacaa cccggtatcg ttgagactga ttttagccaa gtccgttttc atggagataa
    11341 agagagagca gcgtcagtct atcaaggaat tgatgctctt caagcaaatg atattgccag
    11401 ctgtactcta tttgttgcaa atcaacctgc acatgtgcag atttctgata tgaccattat
    11461 ggcaaccaaa caggcaactg gctttactat tcatagagat tagaggggag atagctagaa
    11521 tgaacagaaa atatttagca ctcgctcttg gcttgctcac tatcatgtcg ctttctgcct
    11581 gtcaaactga aaagaagggc agttccgcaa gtagctcaac tgctgatacc caggttccta
    11641 atgccaatac aagcacgtca tcaacagtcc aacgtgagat ttctcttagt tctatggata
    11701 tagatgctct aatgcaaggc aattacgata gtatactagg cacctggcaa aatagccaag
    11761 gaaattcact agtcttcaat agcaaaggat tagtagcaga tagccaatcc ttacttggcc
    11821 gcggaaaaat aactgacgga atttttgaaa caggctatgt agacgcaacg attggcgatg
    11881 taacactatt aatgattccc aaaggaacac aagcaaatac aactgagata gacactactg
    11941 actctacgcg cgatagaatg attgtaataa gccaagaaac aacagccgac gtggtagatg
    12001 tctattatcg cttgaccaat tcagccacta gcggtataga cccattaaaa aatactgaaa
    12061 caggcgtcca gttggatagt ggaccaaaaa cgattgatta tgccaactca attttaggcg
    12121 aaaacaactg gcgcgtcatt gaaggtaact acacgcgcac cgaatctatt ccttataatg
    12181 ttttggaagg cgatgataat gcccgttaca ctatttacca aaacggtgtc attatcaatg
    12241 cagattatca aattgtttat caaccataat gattctctag gaggttagac atgacattca
    12301 catcatttga accaacacgc aatgtgtaag attttcattt ggcagccttt gcctactatg
    12361 atggactaga tgtaatcgac caactcaagc caggaacacc tgttcagcta gtcggagagc
    12421 cttcaaaccc acatgattca gaagctgtag caatctttta tcagggcaca aagttaggat
    12481 atatcccatc ggataaaaac tcactaatca gtcggttaat ctattttgga cacggcgata
    12541 ttctagaggc acgtattcag atgtccaata cagaaaatca tcctgatcgc cagtttcgag
    12601 tcgttgtaaa actaaaagat aatcgtaaaa atgatagtcg gtaatttacc aacctaccca
    12661 ttttctactt aacacggagc tgtgctctct gtttttgttc ttcaataatg cttaaaaagg
    12721 ctgcaaactc cctatccagg cgatgttggt aggccttatt t
//
LOCUS       DASFRC010000057        12742 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.057, whole genome shotgun sequence.
ACCESSION   DASFRC010000057 DASFRC010000000
VERSION     DASFRC010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 12742)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12742)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12742
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.057"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            63..2204
                     /locus_tag="U1087_001120"
     CDS             63..2204
                     /locus_tag="U1087_001120"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GH92 family glycosyl hydrolase"
                     /protein_id="HEM4755603.1"
                     /translation="MYTSIVSTIDTRYGTYNSHAFSNGNTLPLTGAPFGMNYFAPQTS
                     DQTGNWWFNPYEPVYQGIRLTHQPSPWLGDFASLLLTPVTGELSRDSLFHRQSSYQLD
                     QAIFRPDLLQLQSNRFRLISRLAPSRYGASFEIASFANQPIGMVFYSSGKSIYRLLNP
                     HQLLIQIFQVSACQSPDFCMYALLEFEEEITECYHLVKDRKIAKTEVVGEDLHLRINF
                     SSTSIKGRLATSFISPEQAAFLLKDVPDFPQAQKQAENTWNQLLGRIQIRDKKTEDIN
                     FFYHCLYRCLLYPQTFYEPSPDGQAIHFDPISNQAKLGKFFTNNGYWDTFRSSYPLLS
                     LIYPDYLEKFLHGILQHYRDTGFLPKWLSPDERGIMPGTLVDGVIADAACKGLVPDLM
                     EDFLQAMIETSQKTDADQRYGRHGSQIYRQLNYLPLDFNESVSHSLDYAYSDWAISQV
                     AEKLGQDQLAKQYAQMCLGYRQLFDSQTGLMRAKDRQKQFRADFSPLSWGRDYAECSA
                     LQATLSVFHDIDGLIELMGGKEAFTNYLIQLCNQEPYFSPEQYGYEIHEMSEMAQVNL
                     GQLAISNQPSFHIPYLFQWSTKPEYTSLLIHKIRQTAFKTGFQAYPGDEDNGSLSAWY
                     IFSCLGFYPVCPGKADYQIGLPHFKEVDLLLADQHKLTISTPKSDANFQFVKQVSLDK
                     QVVQTIKHDQLIKSNCLEFDLSILPSNEAHS"
     gene            complement(2244..6719)
                     /locus_tag="U1087_001121"
     CDS             complement(2244..6719)
                     /locus_tag="U1087_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterial Ig-like domain-containing protein"
                     /protein_id="HEM4755604.1"
                     /translation="MTKCDFDKRERFGIRKFTIGACSVLIGATLFGTQVSADQLENVD
                     SLSEPAVELSSVVNEHVEKIEAEEGMSPISADEKAVTEELNGEVSVSDSREEKLPSAP
                     SDNPENKLEDIEEAEDKEIDSSDSGLLLSDFPQVEDQGIRPKEIKFDNWDQVLTWEPG
                     ARPDDDLNRASVELVERFRGHVVNERANENAKVEALSNTNSKAKDHASVGGEEFKAYA
                     FDYWQYIDSMVFWEGLIPSPDVIDAGHRNGVPVLGTIFYNWSSSIEDQEKFVSSLRQD
                     PDGSFPVARKLVDMAKYYGFDGYFINQETTGSLVQPLGETMRNFMLYTKEYAESIGYP
                     ITYSWYDAMTYEYGRYHEDGLGEYNYPFMEKEGDKVPADRFFANFNWTRAKNNNSIEV
                     AKRIGRDPFDIFAGFELQRGGSYKTQINWDALFDENGKLKLSLGLFAPDTITSLGATG
                     EDYHENENIFFTGYQGDPTKQKPSDKNWYGLANLIADKTAITSSNFNSSFNTGHGKKW
                     FVDGKVAKDGEWNYRSVSGILPTWRWWIEASGEKLAAAYDFDDAYNGGNSLRFTGDLE
                     KDGKQEVKLYSTKIPLTETSRLRVAHKGGLGANISLALALEPDYQFANKEAWRLLKLS
                     GDWQDQTFDLSSLAGKTVYGIQVVVENEAALSDFDFRLGQLAIYDQENSPTAPKDGQV
                     LTKRLKNAQDAEAVISFTGTDDADYYEVYAQVDGQWKLLTGSSNTRIYLPQLVRSAQA
                     EGRTQALKVHAVGKNGLRSEAGEFIFDWEMTVKDTSLPKPLAENIVLGAEVIGSSFAK
                     KEGGEGIEGMLNGTITSLSDKWSSHQLSGHVDIRLTQPRTVVRWAMDHAGAGGESVND
                     GLMNTKDFDLYYKNENGDWVLAKEVRGNRDHVTDIVLDKPIRAQEWRLDVLTSDNGTP
                     WKAIRIYNWRMYEELDMETPNIPMPHAVARHLGNHQIQVGFKDVPANRKIALYSSPDA
                     VKPLAELETTESGNLIFDPIRFESLPEFIYYRTLEEGKDWSNLLAIRVPQGEKVVKAM
                     EWIAPLEKKVYRQGSPLSLAGAQFRVAFEGDWPAERVNTTNPAVTVRGFDPQKLGEQT
                     LTVSYLGETLAQPLMVYVVEDMAQGEKKAVGLEIQQLPKVQYIVGDDLDVTNGRFAII
                     YDDESTQSISLTEAGVEIVGFDSHQEGRQSLGLRYAGLETSFDVLVSPKPIVNDEYLK
                     QKIAEIEALQTQTAYLYSSEQTQLALQTALEEAKSVVADTNRTVEQVEAAQTLLEKQL
                     GELDGEKLYQADLGRLNQLIQEVKGIDRPINSSELSSLLEKTEKILGSDSIRPDEMKE
                     LLSEWTDLFEQSSLVTHVGTRDSMESKNLLAPEKPRMDLTYELVPRQIITRTSTDLPL
                     GKERIVQEGADGQMMVAHLVYSDGRRELYSRTVADESQPKIVEVGSGLPIQQEKTLMV
                     ENSPQVEKQIRDASLQKSGLPQTGDTYQEKYVLLGLFGVALAGLSQLAKLRKQGE"
     gene            complement(6965..7363)
                     /locus_tag="U1087_001122"
     CDS             complement(6965..7363)
                     /locus_tag="U1087_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mini-ribonuclease 3"
                     /protein_id="HEM4755605.1"
                     /translation="MTKAVDVNLINGIALAFEGDAVYSMYVRRHLIFKGLTKPNKLHG
                     EANKYVSAKAQASLISALLEAQLLTEKEEEIYKRGRNTNSHTKAKNADVVTYRMSTGF
                     EAVLGYLHMTEQMERLDELVGWCIKFVENN"
     gene            complement(7356..8699)
                     /locus_tag="U1087_001123"
     CDS             complement(7356..8699)
                     /locus_tag="U1087_001123"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002916477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HEM4755606.1"
                     /translation="MIKIYDTMTRSLRDFVPLEEGKVKMYVCGPTVYNYIHIGNARSV
                     VAFDTIRRYFEYRGYDVTYISNFTDVDDKIIKAANEAGMTTKELSDKFIAAFKEDVAK
                     LGVKPATKNPRVIDYMGEIIDFVQVLIDKGYAYEASGDVYFRVEKAENYARLANKTLS
                     DLEAGASGRVEGEGQLKEHPFDFALWKTAKPGEVSWESPWGAGRPGWHIECSVMATEI
                     LGATIDIHGGGADLEFPHHTNEIAQSECKTGQTFANYWMHNAMLNINDEKMSKSLGNF
                     LTAHDMLEQIDGQVLRFFLSTQHYRRPLNYTEKAISDAEINLKYLKNTYTQPVQNSVD
                     KSALELHLAAFEAAMDDDFNAANGITAIFDFAKWINSGNYDETVKEAFGKMLEVFGIV
                     FEEEVLDSEIEALIEERQAARANRDFATADRIRDELAAQGIKLLDTKDGVRWTRD"
     gene            complement(8710..8895)
                     /locus_tag="U1087_001124"
     CDS             complement(8710..8895)
                     /locus_tag="U1087_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755607.1"
                     /translation="MLKKLVRQNWPYVLTAIAGTIMFILKFSQGSWQVGMIWLAATAY
                     WLVKLYQKYQVLKNTQK"
     gene            complement(8889..9662)
                     /locus_tag="U1087_001125"
     CDS             complement(8889..9662)
                     /locus_tag="U1087_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside phosphorylase"
                     /protein_id="HEM4755608.1"
                     /translation="MLLEEFENTSAVIEPTDMAIRGGGEVCETMIFSFNGEIVDRVRQ
                     LPESREGGYLESINGRHPWYILERDGVRVAVMLAVIGAPMAVGHLEELKACGFENFIV
                     LGSCGVLDKSLVADKIILPSSALRDEGTSYHYAPASDEISYDPALLLTMEKALDQAGI
                     EHVRAKTWTTDAFYRETSAKVKRRLAAGAMVVDMEASAIMAWANFRQAKVYQFFYTAD
                     YVDYHKNEWDARREERTADSMTFFEVAMAIARKLESTSC"
     gene            complement(9677..10294)
                     /gene="cysE"
                     /locus_tag="U1087_001126"
     CDS             complement(9677..10294)
                     /gene="cysE"
                     /locus_tag="U1087_001126"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000539958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HEM4755609.1"
                     /translation="MGWWKDTIEIVKEKDPAARTTLEVLLTYPGVKALAAHRLSHWMW
                     KKGFKLLARMHSQFWRFWTNIEIHPGADIASGVFIDHGAGLVIGETAIIESGVMLYHG
                     VTLGGTGKDTGKRHPTVRKGALVSAHAQVIGPIEIGENAKVGAAAVVLADVPADVTVV
                     GMPAKIVRVHGQKDEKVIHDMEDGREHYTTKLAELREASHRSSHL"
     gene            complement(10348..12567)
                     /gene="pnp"
                     /locus_tag="U1087_001127"
     CDS             complement(10348..12567)
                     /gene="pnp"
                     /locus_tag="U1087_001127"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HEM4755610.1"
                     /translation="MSKQVFETVFAGKKLVVETGQVAKQANGAVVVRYGDSTVLTAAV
                     MSKKMATGDFFPLQVNYEEKMYAAGKFPGGWMKREGRPSTDATLTARLIDRPIRPMFA
                     EGFRNEVQVINTVLSYDPDASAPMAAMFGSSLALAISDIPFNGPIAGVQVGYVNGELI
                     INPDKAQMEESLLDLTVAGNKDAINMVESGAKELSEDIMLEALLKGHEAIQELLDFQN
                     QIVAAVGKEKADVELLQVDPELQAEIVAAYNDDLKKAVQVEEKLAREDATNAVRETVI
                     AAYEEKYAEHEEFDRIMRDVHEILELMEHAEVRRLITEDKVRPDGRRVDEIRPLDAEV
                     DFLPNVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLGDEYKKRFLHHYNFPQYSVGS
                     TGRYGAPGRREIGHGALGERALEQVLPSLEDFPYAIRLVAEVLESNGSSSQASITAGT
                     LALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQGLEDHFGDMDFKVAGTRDGITAL
                     QMDIKIDGITPQILEEALAQAKKARFEILDVIEATIPEVRPDLAPTAPKIDTIKIDVD
                     KIKIVIGKGGETIDKIIAETGVKIDIDEDGLVAIFSPDRDAIERTKEIIAGLVREAKV
                     DEVFQAKVVRLEKFGAFVNLFDKTDALVHVSEMAWTRVNKPEDLVEIGDIVDVKVIKI
                     DDKGRIDASMKALLPKPEGYVEPEKRERSDRPRRHKDNKEKKDNNFGEFKFHKVEKK"
BASE COUNT         3403 a         3289 c         2477 g         3573 t
ORIGIN      
        1 ctcgtcgaag taataaaaga aaaaataaat gacgataaaa taaaaaaaga aaaggatagc
       61 ctatgtatac ctccatcgtt tcaaccattg acacccgcta tggtacttat aactcacatg
      121 ccttttcaaa cggaaacacc ctaccattga caggtgcccc tttcggcatg aattattttg
      181 ctccccagac cagcgaccag actggaaact ggtggttcaa tccctatgaa cctgtctatc
      241 agggcattcg cttaacccat caacccagtc cttggttggg agattttgcc tccctcctat
      301 tgacgcctgt cacaggcgaa ttaagccgag atagcctctt tcaccgtcaa tctagctacc
      361 aactggatca ggctattttc cgacctgacc tccttcaatt acaatccaac cgctttcgct
      421 tgataagccg tttagctccc agccgatacg gagccagttt tgagatagca tcttttgcta
      481 accagcctat cggaatggtc ttctattcat ctggaaaatc catttatcga ctgctcaatc
      541 ctcaccaact cctcattcag atttttcagg tcagcgcctg ccaatcccct gatttctgca
      601 tgtatgctct cctagaattt gaagaggaaa taacagaatg ttatcatctg gtcaaagatc
      661 gcaagatagc taaaacggaa gtggtgggag aagatttgca ccttcgcatc aacttctcaa
      721 gcacttctat caaggggcgc ttggctacct cttttatcag ccctgagcag gccgcctttc
      781 tattgaaaga tgttcctgac ttcccccaag cccaaaaaca agcagaaaac acctggaatc
      841 agctcttagg acgtattcaa attcgtgaca aaaaaacaga ggacatcaat ttcttctacc
      901 actgcctcta ccgttgccta ctttacccac agactttcta tgaacctagt cctgatggac
      961 aagccattca tttcgaccct atcagcaatc aggccaaact aggtaaattt ttcaccaaca
     1021 acggctactg ggacaccttc cgttcctcct atcctctgct ttcacttatc tacccagact
     1081 atttggaaaa gtttctccac ggcattctcc aacactatcg agatactgga tttttaccca
     1141 aatggttatc gccagacgag cgcggtatca tgccaggaac tcttgtggat ggagtcattg
     1201 ctgatgcggc ctgcaaggga ctggttcctg atttgatgga agattttctc caagccatga
     1261 ttgaaaccag tcaaaagacc gatgcggatc aacgttacgg ccgtcatggt agtcagattt
     1321 accgccagtt aaactatctt ccccttgatt tcaacgaatc tgtgagccat tctcttgatt
     1381 atgcctacag tgattgggct atcagccaag tagcagaaaa actggggcag gaccaactgg
     1441 ctaagcaata cgctcaaatg tgcctcggct accgacagtt attcgatagc caaacaggtc
     1501 tcatgcgtgc caaggataga cagaaacaat tccgagcaga tttttcccct ctaagctggg
     1561 gaagagacta tgccgaatgc tctgccctac aagcaaccct gtccgtcttt catgacatcg
     1621 atggactgat agaattgatg ggcggaaaag aagcctttac caactatcta atccagctct
     1681 gtaatcagga gccctatttc tcacctgaac aatacggcta cgaaatccac gaaatgtcgg
     1741 aaatggcgca agtcaatctc ggtcagcttg ctatttcaaa tcaaccgagc ttccatatcc
     1801 cttatctttt ccaatggtcc acaaaaccag aatacactag tctactcatt cacaaaataa
     1861 gacaaacagc tttcaagaca ggttttcaag cctatccagg tgacgaggat aacggtagcc
     1921 tttcagcctg gtacatattc tcctgtctag gcttctatcc tgtctgtcct ggaaaagccg
     1981 actaccaaat cggactacct cattttaagg aagtagactt gctacttgca gatcaacaca
     2041 agctgaccat ttctactcca aaaagcgatg caaatttcca gtttgtcaag caagtttcat
     2101 tagacaaaca agtcgtccaa accatcaagc atgaccaact gataaaatca aactgcctag
     2161 aatttgacct atctatactt ccaagtaacg aggcacactc ttagaaaaat aaatagtcag
     2221 ggagcacccc ctgactattt attttattca ccttgctttc tgagcttagc taactgagat
     2281 aggccagcca gagccacacc aaataaccca agaaggacat acttctcctg ataggtatca
     2341 ccagtttgtg gaagaccgct cttctgcaga gaagcatctc tgatttgctt ttcaacctgc
     2401 gggctatttt ctaccattaa agtcttctct tgctggatag gcaaaccgct gccgacctcc
     2461 actattttcg gctgactctc atcagcaact gttcgtgaat acagctcgcg acgaccatca
     2521 ctatagacta ggtgagctac catcatttga ccatcagccc cctcctgaac aattcgctct
     2581 ttgcccagtg gcaaatcagt gctggtccgt gtgatgattt gtctcggcac cagctcataa
     2641 gtcaaatcca tcctcggttt ttcaggagct agtaaattct tagactccat cgaatctctt
     2701 gtaccgacat gagttaccag actagactgt tcaaacaaat cagtccattc actgagcagc
     2761 tccttcatct catctggacg aatactatcc gaacctaaaa ttttctcagt tttttcaagt
     2821 aaagaactca gctcagaaga atttataggc ctatctattc ctttcacctc ttggattagc
     2881 tgattgagac gcccaagatc tgcttggtaa agtttctccc catccagctc tcctaactgt
     2941 ttctctaaaa gagtttgagc ggcttcaacc tgctcgactg tccgattggt atctgctacc
     3001 acagacttag cttcttccaa ggcagtttgc aaggcaagtt gtgtctgctc actagaatag
     3061 agataggctg tttgggtttg tagagcctca atttctgcta ttttctgctt tagatactca
     3121 tcattgacga ttggcttcgg ggaaacaagg acatcaaatg aagtctccaa accagcatac
     3181 cgcaaaccta ggctctgacg cccctcttga tgggaatcga aaccaacaat ttctactcca
     3241 gcttctgtca aagagatgga ctgagttgac tcatcgtcat agataatagc aaatcgacca
     3301 tttgtgacat ccaaatcatc tcctacaata tactgcactt ttggtaactg ttggatttct
     3361 agaccgactg cttttttctc accttgggcc atatcttcaa caacatatac catcagtggc
     3421 tgagcaagtg tttctcctag ataggaaacg gtcaatgttt gttcacctaa tttttgcgga
     3481 tcaaatcccc ttactgtaac tgccggattg gtggtattca cccgttcagc aggccaatct
     3541 ccttcaaaag ctacacggaa ttgtgctcct gcaagcgata aaggactacc ttgtcggtaa
     3601 acttttttct ctaggggagc tatccattcc atcgctttca ctactttttc accttgcgga
     3661 acgcgaatgg ccaatagatt gctccaatcc tttccttcct ccagagtacg gtagtaaatg
     3721 aactcaggca gggactcaaa gcgaatcggg tcgaatataa gatttcctga ctctgtcgtt
     3781 tccaattctg ctagtggttt tacggcatct ggactagaat aaagcgctat tttccgattg
     3841 gcagggacat ccttgaaacc tacttgaatc tgatgattac cgagatggcg agcaacagca
     3901 tggggcatcg gaatatttgg tgtctccatg tccaattctt catacatacg ccaattataa
     3961 atacgaatgg ccttccaagg agtaccatta tcagaagtca agacatccaa acgccattcc
     4021 tgcgctcgaa ttggtttgtc caatacgatg tctgtcacat gatcacgatt gccacgaact
     4081 tctttggcta acacccaatc accattctca tttttataat agagatcgaa atccttggtg
     4141 ttcattaagc catcattgac cgattcacca cctgcaccag catgatccat agcccatcgc
     4201 acgactgtcc gaggttgggt caaacgaata tctacatggc cactcaattg atgggaagac
     4261 catttatctg acagactggt aatggtccca ttcaacatac cctcaatgcc ttctccacct
     4321 tcttttttag caaaacttga accgatgact tctgctccga gaacaatgtt ttctgccaac
     4381 ggtttaggaa gactggtatc tttcaccgtc atttcccaat caaagataaa ctcccctgct
     4441 tccgaacgca aaccattttt cccaacggca tgaactttca aagcttgggt tcgaccttct
     4501 gcctgagcag aacgaactag ctgagggagg taaatccttg tattagaaga acctgtcagc
     4561 aatttccact gtccgtcaac ctgcgcatat acttcataat agtctgcatc atctgtccct
     4621 gtaaagctaa tcacagcttc agcatcttgg gcattcttca atcgcttagt aaggacttgg
     4681 ccatctttcg gtgcagtagg tgaattttcc tggtcatata tagccaactg ccctaaacga
     4741 aaatcaaaat ctgacagtgc tgcttcattt tcaacaacca cttggatacc gtacactgtc
     4801 tttcctgcca gactagataa atcaaaggtc tgatcttgcc aatctcctga tagtttaagc
     4861 aagcgccacg cttctttatt cgcaaattga taatctggtt caagcgctag agctagggag
     4921 atatttgcac ctagccctcc tttgtgcgca accctcaaac gacttgtttc tgttagagga
     4981 atcttggtgg aatacaactt aacttcctgc ttaccatctt tttccaaatc gcctgtaaaa
     5041 cgaagagagt tgcccccatt atatgcatca tcaaaatcat aagccgcagc aagcttttca
     5101 ccacttgctt caatccacca ccgccaggtt ggtaaaatac cagacacaga gcgataattc
     5161 cattccccat ctttggcaac cttgccatct acaaaccatt ttttcccgtg ccctgtatta
     5221 aaggaactat tgaaattact gcttgtaata gccgtcttat ccgcaatgag attggccaag
     5281 ccataccaat ttttatccga aggtttctgt ttggttggat caccttgata gcctgtaaag
     5341 aagatattct cattctcatg ataatcctca cccgtcgcac ccaaacttgt aatggtatct
     5401 ggcgcaaaca gaccgagtga taatttcaat ttcccatttt catcaaacag agcatcccag
     5461 ttaatttgtg ttttgtaaga gcctccccgt tgcaattcaa atccagcaaa aatatcaaat
     5521 ggatctcgac cgattcgttt cgccacttcg attgaattgt tatttttggc ccgtgtccag
     5581 ttaaaattcg caaagaaacg atccgcaggg accttgtctc cttccttttc cataaacgga
     5641 tagttgtact cacccaaacc atcttcgtga tagcgaccat attcgtaggt catggcatca
     5701 taccaagaat acgtaatcgg ataaccaatc gattctgcat attccttggt atagagcata
     5761 aagtttctca ttgtttcccc tagtggttga accaagcttc ctgtagtctc ttgattaatg
     5821 aaataaccat cgaaaccata gtatttagcc atatctacca acttacgagc aacaggaaaa
     5881 cttccatcag gatcctgtct caaagaagac acaaacttct cttggtcttc aatactactg
     5941 gaccaattgt agaaaatcgt tcccaaaaca ggcacaccat tgcggtgtcc agcatcaatg
     6001 acgtctgggc taggaatcaa gccttcccaa aataccattg aatcaatata ctgccagtaa
     6061 tcaaaggcat aggctttaaa ctcttctccc ccaacagagg catggtcttt cgccttagag
     6121 ttggtatttg aaagagcttc tacctttgca ttctcattgg ctctctcatt gacgacatgc
     6181 cctctaaagc gctcaaccaa ctctacagaa gcacggttca aatcatcatc tggacgagca
     6241 cctggctccc aagtaagcac ctgatcccag ttgtcaaact taatctcttt cggacgaatt
     6301 ccttgatcct ctacctgagg aaaatcagaa agcaacagac cagaatctga agaatctatc
     6361 tctttatctt ccgcttcctc tatatcctct agtttatttt ctggattatc agacggagct
     6421 gaaggcagtt tttcttctct actatctgat acagatactt ctccattcaa ctcttcggtc
     6481 accgctttct cgtctgctga aattggtgac attccttctt cagcttcgat tttttccaca
     6541 tgttcgttca ctacggaaga gagttcaaca gctggctctg acaagctgtc cacattttct
     6601 agctggtccg cagaaacctg tgttccaaat aaggtcgcac caatcaaaac agaacaggca
     6661 cctattgtaa attttcgaat accgaatcgc tcacgtttgt cgaaatcaca ttttgtcata
     6721 ttttcctcct acacaattgt agtgcaacag ctgttctcaa tttcctcctt cccagatcat
     6781 agttggcaca tgctaccttt gatagaacag ctatcacacg aagtttatca ggttttatta
     6841 attccattgt acagaggaaa aatatgacct tcaagccctc atggtcccct tctttaaatc
     6901 agataaaaag aactttagtt tagagaaaac aaaaaagagg aagtttccct cctcgttgtc
     6961 ttcgttaatt attttctaca aacttaatac accagcccac cagttcatcc aggcgttcca
     7021 tctgctcggt catgtgcaaa tagcccaaaa ccgcctcaaa gcctgtggac atccgatagg
     7081 tgaccacgtc cgcattcttg gccttggtat ggctattggt attgcgtccc cgcttgtaga
     7141 tttcttcctc tttttcggtc aatagctgag cttctaaaag ggcggaaatc aggcttgcct
     7201 gagccttggc cgagacatat ttgttggcct ctccatgcaa tttattgggc ttggttagcc
     7261 ccttgaaaat caagtgccgt ctgacataca tggaatagac agcatcccct tcaaaagcca
     7321 gggcaattcc attgatgaga ttgacatcta ctgccttagt cacgtgtcca cctcacacca
     7381 tccttggtat ccaagagctt gatgccctgg gctgccaatt catcacgaat acggtcagcc
     7441 gtcgcaaagt cccgattggc acgcgctgct tgacgctctt ctatcaaggc ttcaatctcg
     7501 ctgtccaata cttcttcttc aaagacaata ccgaacactt ctagcatttt gccaaaggct
     7561 tcttttacag tttcatcgta attgcctgag ttgatccatt tggcaaagtc aaagatagcc
     7621 gtaatcccat ttgccgcatt gaaatcatca tccattgccg cttcaaaggc cgccagatgt
     7681 aattcaagag ctgacttatc cacagagttt tgcacaggtt gtgtataagt atttttcaga
     7741 tattttagat tgatttccgc atctgaaatg gccttctcag tgtagttgag tggacggcgg
     7801 tagtgctggg tagataggaa gaagcgcaag acctgaccgt caatttgttc caacatgtca
     7861 tgggctgtca ggaaattgcc caaggacttg gacatcttct catcgttgat attgagcatg
     7921 gcattgtgca tccagtagtt ggcaaaggtt tgacctgttt tgcactcaga ctgggcgatt
     7981 tcattggtat ggtgagggaa ttccaagtcc gctcccccac cgtgaatgtc aatggtagct
     8041 cccaaaatct ctgtcgccat aaccgaacac tcgatatgcc aacctggacg acctgccccc
     8101 cagggacttt cccaagacac ttcacctggc ttggcagttt tccacagggc aaagtcgaaa
     8161 ggatgttctt tcagttgacc ttctccctca actcgaccag aagcaccagc ctccaagtca
     8221 gacagggttt tgttggccaa acgagcataa ttctccgcct tttccacacg gaaatagaca
     8281 tctccagaag cttcataggc gtagcccttg tcaatcaaga cctgcacaaa atcgatgatt
     8341 tcacccatgt agtcgatgac acgaggattt ttggtagcag gcttgacacc cagttttgcc
     8401 acatcttcct tgaaagctgc aataaattta tcagaaagtt cctttgttgt catgccagct
     8461 tcattagcag ccttgataat cttatcatcc acatccgtaa agtttgaaat gtaggtcaca
     8521 tcatagccac ggtattcaaa atagcggcgg atggtatcaa aagccacgac actacgggca
     8581 ttaccgatat ggatatagtt gtaaaccgtc ggaccgcaga catacatctt gaccttaccc
     8641 tcttccaagg gcacaaagtc acgcagactg cgagtcatgg tatcgtaaat tttaatcata
     8701 gtttctccat tacttctgag tattctttag gacttgatac ttttgataca attttactag
     8761 ccaataagct gtcgctgcca accaaatcat ccctacctgc cagcttcctt gggagaattt
     8821 aaggataaac atgattgtcc cagcaatggc ggtcaacaca taaggccagt tttgtcttac
     8881 taattttttt aacatgatgt actttctaat tttcttgcaa tcgccatggc cacttcaaag
     8941 aaggtcatac tgtcagccgt ccgttcctct cgacgggcat cccattcatt cttgtggtag
     9001 tccacatagt ctgccgtgta gaaaaattga tagaccttgg cctgacgaaa gtttgcccag
     9061 gccatgatag cagaagcttc catatcgacc accatagcac cagcggctag gcgacgtttg
     9121 accttggcag acgtttcccg atagaaagcg tccgtcgtcc aggtcttggc ccgcacgtgc
     9181 tcgattcccg cttgatccaa ggccttttcc atggttaata gcagagcagg gtcatagctg
     9241 atttcatcac tggcaggagc gtagtggtaa ctagttccct cgtcccgcag ggcagagcta
     9301 ggaaggataa tcttatccgc aacaagcgac ttatccagca ccccacaaga gccaagaacg
     9361 ataaaattct caaagccaca ggctttcagt tcctccaagt gaccaactgc catgggagca
     9421 ccgattactg ccaacatgac cgcaactcgc accccatctc tttccaaaat ataccaagga
     9481 tgacgaccat taatgctttc taaatagcca ccttctctgc tctcaggtaa ctgacggaca
     9541 cggtccacaa tttccccatt gaaggagaaa atcatggtct cacaaacctc tccgccacca
     9601 cgaatggcca tatccgtcgg ttcaatgact gcagaggtat tttcaaattc ttctagtagc
     9661 acgtcaacct tctttcctac aagtgcgatg aacggtgact agcttctctc agctctgcta
     9721 atttagtcgt gtagtgttca cgaccatctt ccatgtcatg aatgaccttc tcatcttttt
     9781 gaccgtgtac acggacgatt ttggctggca taccgaccac tgtcacatct gctggaacat
     9841 cggctaggac aacggcagct gcaccaactt tggcattttc cccaatctca atgggaccaa
     9901 tgacttgagc gtgggcagaa accagagccc cttttcgcac agtcgggtgg cgcttgcctg
     9961 tatccttgcc cgttccacca agcgtaactc cgtggtaaag catgacacct gattcaataa
    10021 tggcggtttc tccgataacc aaaccagctc catggtcgat gaagacacct gaagcaatat
    10081 ccgcccctgg atgaatttca atattagtcc aaaaacgcca aaattggctg tgcatcctag
    10141 ctagtaattt aaagcctttt ttccacatcc aatgggacag acggtgggca gccaaggcct
    10201 tgacacctgg gtaggtcaaa agaacttcca aggtcgtccg tgctgccgga tctttttctt
    10261 ttacaatctc aatggtgtcc ttccaccaac ccatagtcac tccttctagc gagaagacaa
    10321 gcccgctacc gaacttgtct actcagctta tttcttttca accttgtgga atttgaattc
    10381 accaaagttg ttatcttttt tctctttgtt gtctttatga cggcgtggtc tgtcagaacg
    10441 ctcgcgtttt tctggctcca cataaccttc tggttttgga agaagagcct tcatagaagc
    10501 gtcaatacgt cctttatcat caatcttgat gactttaaca tcgacaatat cgccgatttc
    10561 aactaggtct tctggtttat tgacacgagt ccaagccatt tcagaaacgt gaacaagggc
    10621 atctgtcttg tcaaagaggt taacaaaggc accgaatttc tccaaacgaa caacttttgc
    10681 ctgaaagact tcgtccactt ttgcctcacg aacaagacct gcgatgattt ccttggtccg
    10741 ctcaatcgca tcgcgatctg gtgagaagat cgccacaaga ccgtcttcgt caatatcgat
    10801 tttcacgcca gtttctgcaa taatcttatc gatggtttcg ccacccttac cgataacaat
    10861 cttgatctta tctacatcaa tcttgatagt gtcaatcttc ggtgcagttg gtgccaagtc
    10921 aggacgaact tctgggatcg tcgcttcgat gacatcgagg atttcaaaac gtgccttctt
    10981 agcctgtgcc aaggcttctt ccaagatttg cggtgtgata ccgtcaatct tgatgtccat
    11041 ttgaagggct gtgataccgt cacgagtacc agccaccttg aagtccatgt cgccgaagtg
    11101 gtcctcaaga ccttgaatat cggtcaagac ggtgtagttg gtaccgtctg aaatcagacc
    11161 catggcaatc cctgcaactg gtgccttgat tggcacacca cctgccataa gggcaagggt
    11221 accagctgtg atagaagcct gtgatgaaga accgtttgat tccaaaactt ctgctaccaa
    11281 gcggatagcg taagggaagt cttccaagct tggcaagact tgctcaagag cacgctcacc
    11341 gagagcaccg tgaccaattt cacgacgacc tggtgcacca tagcgaccag ttgaaccaac
    11401 tgaatattgt gggaaattgt aatggtgcaa gaagcgtttc ttgtactcgt cgcccaatcc
    11461 gtcgatgatt tgagtttcac ccattggggc caaggtcaag actgaaagtg cctgagtttg
    11521 accacgggta aagagacctg agccatgaac gtttggcaag aagtccactt ctgcgtccag
    11581 cggacgaatt tcatccacac gacgaccgtc tggacgaacc ttgtcttctg taatcaaacg
    11641 acgaacctct gcatgctcca tgagttccaa gatttcatgg acatcacgca tgatacggtc
    11701 aaattcttcg tgttcagcat atttttcttc gtaggctgcg atgacggtct cacgcacggc
    11761 attggtcgca tcttcacggg ccaatttttc ttctacctgc accgcttttt tcaaatcgtc
    11821 attgtaagct gcgacaatct cagcctgcaa ttctgggtcc acttgaagaa gttccacatc
    11881 tgctttttcc ttgccgactg ctgctacgat ttgattttgg aagtcaagga gttcttgaat
    11941 agcctcatga cctttgagga gtgcctccaa catgatgtct tctgacaatt ctttggcacc
    12001 agactctacc atgttgatag catccttgtt accagctact gtcaagtcaa ggagagactc
    12061 ttccatttga gccttgtcag ggttgatgat gagttcacca ttgacataac caacctggac
    12121 acctgcgatt gggccgttga atgggatgtc tgagattgcc aatgccaatg aagaaccaaa
    12181 catggctgcc attggagctg aggcatctgg atcgtaagaa aggactgtgt tgatgacttg
    12241 gacttcgtta cggaagcctt ccgcaaacat tggacggatc ggacggtcaa tcaaacgagc
    12301 tgtcaaggtc gcatcggttg acggacggcc ttcacgcttc atccagccac ctgggaattt
    12361 ccctgcagcg tacattttct cttcatagtt gacttggagc gggaagaaat cacccgttgc
    12421 cattttcttg gacataactg ccgctgtaag gactgttgag tcgccatagc gaacaacaac
    12481 cgcaccattg gcttgtttgg caacctggcc tgtttcaacg accaatttct tgccagcaaa
    12541 aaccgtttca aatacttgtt ttgacatgaa ttgtctccta ttttttctga aatttttcct
    12601 gcgtattttc tacaaaagac aatcaaacaa gcttgtttca ctctcttttg cacaaaacca
    12661 cgcatacttc ttattttatc atatttgacg gaaaatgtgg ggaattgagg aaggaatttg
    12721 agggaaaatc taacctgcta ta
//
LOCUS       DASFRC010000058        12705 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.058, whole genome shotgun sequence.
ACCESSION   DASFRC010000058 DASFRC010000000
VERSION     DASFRC010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 12705)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12705)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12705
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.058"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..1291)
                     /locus_tag="U1087_001128"
     CDS             complement(<1..1291)
                     /locus_tag="U1087_001128"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755611.1"
                     /translation="MYGKNNISWSNFEAIHSNPRDMFEQLTRILFKRQFLDATSVLVS
                     SPNHPGIEANPIYSSKLDKNIAFQSKFFQAKVDYSQIQKSVEKTIEKYIKSLDTFYLY
                     CNKDLSLDSKSFKKIENSLNEHDIEIVVISNNEILATIIDYPDLQSFFFGNQTITKER
                     FREYNQLSFDSLGTRYNPKFNVVTGTDEKIQLFTKNQSAIDKINSKKSELISELDTFY
                     QIRNDDIIDNVISKIKKYVNSLNDVTATSIDECLEWNSKVNQALKSDLEELAVMKEGL
                     ETDIESEESLSIDERNGLHKKFRELDRLLDTIYFFGCSEEECALITEKILVVSGEAGM
                     GKTQLLATATKEIMDNEGYPLLLLGHHYLSNSDISSQIMEGLDFRGGLRNFLDILDIL
                     GEVENKNIYILIDAINETPNRAVWKNGLAKILSEIEKR"
     gene            complement(1294..2601)
                     /locus_tag="U1087_001129"
     CDS             complement(1294..2601)
                     /locus_tag="U1087_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003076058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEM4755612.1"
                     /translation="MTRMKDSGIEWIGEVPEEWGITKFKYFLDTNKGLTITKENLIED
                     GIPVINYGQIHSKYGKSVSTDRDVLPQVSANYLKFKQSLLKPGDFVFADTSEDIDGSG
                     NFSTRIDDNGELFAGYHTIKAKLKNALEHDFRYFMHYFDSLAFRKQVQNKVSGIKVYS
                     ITQSILQETCLILPSLYEQNQIADFLDKKVAQLDKVKSLLEEQIKTLEDYRQSLIYET
                     VTKGLDKTVPLKDSGVDWIGQIPEGWGVGKLSQFFGEVKKKNVRNFEKNLLSLSYGRV
                     IRKSIDNLMGLLPESFDTYNIIDENDIVFRLTDLQNDKKSLRTGLSKERGIITSAYVT
                     IRTINNFINANYYNHLFYAYDLCKVYYNFGGGVRQGGTWGDLSVLRILIPSVTEQNQI
                     ADFLDKKIEQINQMIAIKKEQLENINKQRQTLIYDYVTGKRRV"
     gene            complement(2594..4699)
                     /locus_tag="U1087_001130"
     CDS             complement(2594..4699)
                     /locus_tag="U1087_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009659312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HEM4755613.1"
                     /translation="MSAIKGKLPLFQANDVNISKDVNLVWSIANTLRGAYRADKYRDV
                     IIPMFVLARLEAALLPTKEKVLAQFQSNPSTPEKIFESLTGYKYYNTSKHTLKNLLNE
                     PDAIKDNFLDYLDGYSKRVKDIIENLKFKEQVDTLASTGRLFTVVKKFSELDLSPSTV
                     DSMRMGYMFEDIIRRFSENEEAGSHYTPREVIALMVNLLLMEADEELFVDNKEIKVLD
                     MAAGTGGMLATAKSYIQQLNPKVNVRLFGQEYLAETYGIGKADMLIRQEESDYFVKTD
                     TLKDSDPFHDKKMNFVIANPPFGQSWGGKDADDGVEQAVKDDQALFESTEGREGRFVN
                     TPTTGDAQLLFHLHALAKLEENGRAAIISNGSPLFSGGTTSGESQIRRYILENDLLEA
                     IVALPGQFFYNTGIGIYIWLYNKDKSPERQGKIQFIDATNEFVPLRKSLGQKRRELSQ
                     DNIKDILQWYHDFEENDRVKIFDSKEFLYKEYLVMQPLQRRGEITEKSLESVQSVQFF
                     AKLFDEYKYQELLEMEPRTAKQDKELQKLEEGRIKQEEILQALRQGLSEATYPNFETF
                     TAVLKDLLSEVKLTPANLNALALAMSEMDKTAEVIKTKKKDKLGEIADGIVYDKTTKD
                     SEIVKLSEEVETYFEREVYPHVPDAHFWWEENKLGAEIPFTRYFYQYQAPEKAEDLLK
                     QFYDLEDQLQALLEDLKHD"
     gene            complement(4864..5811)
                     /locus_tag="U1087_001131"
     CDS             complement(4864..5811)
                     /locus_tag="U1087_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactamase family protein"
                     /protein_id="HEM4755614.1"
                     /translation="MRQAILDKISEQIGQGVYPGASLALFSKGQWQEYYLGTQDGQLP
                     VEAGLTYDLASVSKVVGVGTLATFLVNSGALELDRTLQSYYPAFADSQVTLRQLLTHT
                     SGIDPFIPNRDSLDADQLKEAILKITVTDRKDFLYTDINFLLLGFLLEELGRDSLDQL
                     ISRDVLEPFGMSQTSFGPVSQAVPTVRGVKAGLVHDPKARVLGVHAGSAGLFSTVKDL
                     EIFLERYLTADFAADLPQDYGFDDKRKRSLAWDKKGDWLSHTGYTGTFIMYNRPLQKA
                     AIFLSNRTFDKDERAQWKLDRNQVMVLIRQVLEEEEAVD"
     gene            complement(5808..6542)
                     /locus_tag="U1087_001132"
     CDS             complement(5808..6542)
                     /locus_tag="U1087_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HEM4755615.1"
                     /translation="MLRKNEAIVPVLRINNRAINQGFLEKNLGMKTKLEDGSFADFGD
                     RTSPETKLVLTESPGNRTRAVEGLKKLNKIVIKVDNASEIEALLAQGSQYSKLYQGKN
                     GYGFEAVSPEGDTFLLHAEASVDDLKAILPPVPFKMQDDFSGLTAFTVESIWINTPQA
                     SISQDYYEAILPQQAFLHFVGAEGKDLLTPAEQVWDLEGLRFPVEQDFDWAHLESQLE
                     GPFFKDKKASFIQTVDPSSIELWFEK"
     gene            6724..8991
                     /locus_tag="U1087_001133"
     CDS             6724..8991
                     /locus_tag="U1087_001133"
                     /EC_number="3.4.14.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro dipeptidyl-peptidase"
                     /protein_id="HEM4755616.1"
                     /translation="MRFNQFSFIKKETSVYLQELGALGFQLIPNASSKTNLETFVRKC
                     HFLTANTDFALSNMIADWETDLLTFFQSDRELTDLIFYQVAFQLLGFVPGVDYTDVMD
                     FVEKSNFPVIYGDTIDNLYQLLATRTKSGNTLIDQLVSDDLIPEDNHYHFFNGKSLAT
                     FSTKNLIREVVYVETPVDTAGTGQTDIVKVSILRPHFDGKIPAVITNSPYHQGVNEVA
                     SDKALHKMEGELAEKPAGTIQVSQTKINKLDLDQRELPISPATEKLGHITSYSLNDYF
                     LARGFASLHVSGVGTLSSTGYMTSGDYQQVEGYKAVIDWLNGHTKAYTDHTRSIEVKA
                     DWANGKVATTGLSYLGTMSNALATTGVDGLEVVIAEAGISSWYDYYRENGLVTSPGGY
                     PGEDLDSLTALTYSKSLQAGDFLRSKEAYEKGLAAERAALDRTSGDYNQYWHGRNYLL
                     HADKVQCEVVFTHGSQDWNVKPIHVWNMFHALPSHIKKHLFFHNGAHVYMNNWQSIDF
                     RESMNALLSQKLLGYENNYQLPTVIWQDNSGEQTWTTLDTFGGGQEAVLPLGTGSQTI
                     SNQYAQEDFDRYGKSYPAFHQDLYTGKPNQISMELPVTEDLLLNGQVTLKLRVASSVA
                     KGLLSAQLLDKGSKKRLAPIPAPKARLSLDNGRYHAQENLLELPYVDMPQRLITKGFM
                     NLQNRTDLMTVEEVVPEQWMDLTWKLQPTIYQLKKGDVLELILYTTDFECTVRDNSQW
                     QIHLDLSQSQLILQH"
     gene            complement(9271..10830)
                     /locus_tag="U1087_001134"
     CDS             complement(9271..10830)
                     /locus_tag="U1087_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YSIRK signal domain/LPXTG anchor domain surface
                     protein"
                     /protein_id="HEM4755617.1"
                     /translation="METANKKFRYSIRKFKVGVGSVLIATCLLGAGISTPTAFAMTDS
                     STATETTKTPLQHLKELVEELKMDLEELKKVPEYDSSKYSFQKYLWDDNLKYGKGQMD
                     LASTLKEEDSKIPNIEGLVDFRNHIKLERLTRQVAQYRIKYPDNEEIENEYKVHLEQR
                     DDANYASQIGSNLENYTQEAEQAFERIKEIVKKLEPKAEEPAPVPEAPTPKGDAEAPK
                     DEREVPAPVPTPDIPKEEEAPEPKAEEGVPTPAPVPETPMDEPKMEEPKSEMPAPAPK
                     EEEVPVPTPEAEAPKAEEEIPAPMPEAPAPIPEEPKTDKVESDKQMPEAKQPEMEQPK
                     AEDMPKEEMPKAEQPKAGDSAPKTAVPEVAPKTAEKPKLDFTTKERKVEEALPIKEEI
                     RYDASLALGKSYLLQEGRAGKKVSVYQDVIVDGKVVATNLLSETVVEGQNRILVKGSL
                     EMKKEEVKITPSVQSNPTLSHKGAPSANKATLPATGEQRNNLSLVGLGLAGISLAVVA
                     TAINKKSKDQI"
     gene            complement(10959..12128)
                     /locus_tag="U1087_001135"
     CDS             complement(10959..12128)
                     /locus_tag="U1087_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HEM4755618.1"
                     /translation="MFRLAKEELEKLGAHITATEIYQQPGLWKEAYQLYLDQLEKIES
                     FLKSIKEKHDFVHVVFTGAGTSDFVGQSIANYLNQVNDLKHIRFSAIGTVELVSRPHD
                     YLQADVPTILVSFARSGNSPESVAAVEVAKQLVDQLYQVTITCAPEGKLALAAEGDSD
                     NLLLLQPAGSNDKGFAMTGSYSCMALTALLVFSPASQEEKAAWVEIIARLGQDVLDRE
                     DYVQDLINLDFERVIYLGSGGFYGLAHEAQLKILELTAGKIATMYESPLGFRHGPKSF
                     ITEKTLIFLFASNDAYTRQYDVDLLNEVHGDGIAERIVALSADKLADTEAANFVLAEG
                     GADLPDVFLTFPYIIFAQTVSIMAAIKCNNLPDTPSPTGTVNRVVQGVIIHPLEK"
     gene            12411..>12705
                     /locus_tag="U1087_001136"
     CDS             12411..>12705
                     /locus_tag="U1087_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008808250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HEM4755619.1"
                     /translation="MMNMQNMMRQAQKLQKQMEKSQAELAAAQFTGSSVQDLVTATFT
                     GDKKLVSIDFKADVVDADDIETLQEMTVQAVNAALTKVDEATQKKLGAFAGKLP"
BASE COUNT         3465 a         2905 c         2448 g         3887 t
ORIGIN      
        1 ctcgtttttc aatttcagaa agaatttttg caagtccatt tttccatacc gctcgattcg
       61 gagtttcatt gattgcatca attaaaatat aaatattttt attctcaacc tctccaagta
      121 tatctaatat atctaaaaaa ttacgaagtc cgcctcggaa atctagtcct tccataattt
      181 gtgaagaaat atcactgttg gataaataat ggtgacccaa taaaagaaga ggataaccct
      241 cgttatccat tatctccttt gtggctgtag caagcagctg tgttttcccc atacccgctt
      301 cgccactaac aacaagaatt ttttctgtaa ttagtgcaca ttcctcttcc gaacaaccaa
      361 aaaaataaat ggtatctaac agtctatcaa gttcacgaaa ctttttgtgt aatccattcc
      421 gctcatctat agaaagactt tcttctgact ctatatcagt ttctaaaccc tctttcataa
      481 cagcaagctc ttccagatct gacttcaagg cttgatttac tttagaattc cactccagac
      541 actcgtcaat gctagtagcc gtaacatcat tcaagctatt gacatacttt tttatttttg
      601 aaattacatt gtcaataata tcatcatttc ttatttggta aaaagtatct aattcactaa
      661 ttagttccga ttttttacta ttaattttat caatagcact ttgatttttt gtaaacagtt
      721 gaattttttc atctgttcct gttactacat taaactttgg attgtatcta gttcctagtg
      781 aatcaaacga taattgattg tattccctaa acctttcttt tgtgatagtt tgatttccaa
      841 aaaagaacga ttgtaaatca ggataatcaa taatagtcgc aagaatctca ttattactaa
      901 taaccacaat ctcaatatcg tgctcattta ggctattttc tatttttttg aaacttttac
      961 tatccaatga taaatcttta ttgcaataca gataaaaagt atcaagtgat tttatatatt
     1021 tttcaatggt tttttctaca gacttttgaa tttgactata atcgaccttg gcttgaaaaa
     1081 attttgattg aaaagcaatg tttttatcca gtttagaact ataaatagga tttgcctcaa
     1141 tccctggatg attaggactt gaaaccaaaa cagaggttgc atccaaaaac tgccttttaa
     1201 ataaaatccg agtcagttgc tcaaacatat ctcttggatt agaatgaatg gcctcaaaat
     1261 tgctccacga aatattattt ttcccataca tcctcacacc ctcctttttc ctgtcacata
     1321 atcataaatc agtgtttggc gttgtttgtt gatattttcg agttgttctt ttttgatagc
     1381 aatcatttgg ttgatttgct ctatcttttt atctaagaag tcagcgattt gattttgttc
     1441 tgtaactgaa gggattaaaa tccgtagtac tgataagtct ccccacgtgc ctccttgtcg
     1501 aactcctcct ccaaaattat aatatacttt acataaatca tatgcataga acaaatggtt
     1561 atagtagttg gcattaataa aattgtttat agttcttatt gttacatacg ctgaagtgat
     1621 aatgccacgc tcttttgata atccagttcg taaacttttt ttatcatttt gcaaatctgt
     1681 aagtcggaaa acaatatcat tttcatcaat aatgttgtat gtatcaaacg attcaggtaa
     1741 taatcccatc aaattatcga tagacttccg tattactcta ccataactta gtgataataa
     1801 atttttttca aaatttctga catttttctt tttcacttcc ccaaaaaatt gggataattt
     1861 tcctaccccc cacccctctg ggatctgtcc tatccagtca acacctgagt cttttagggg
     1921 aacggtttta tccagtcctt ttgtgacggt ttcgtaaatg aggctttggc ggtagtcttc
     1981 caaggtctta atttgctctt ccagaaggct tttgacctta tccagctgag cgactttttt
     2041 atcgaggaag tcagcgattt ggttttgttc atacaaactt ggcagtatca aacaagtttc
     2101 ttgcaatatt gattgtgtaa tactatagac tttaattcca ctcaccttat tttgaacttg
     2161 ttttctaaac gccaaagagt caaagtagtg cataaaatat ctaaagtcat gttctaaagc
     2221 atttttgagt ttggctttaa ttgtatgata accagcaaat agttcgccat tatcatcaat
     2281 tcttgtcgaa aaatttcccg aaccatcaat atcttccgac gtatctgcaa aaacaaagtc
     2341 acctggtttt agaagcgatt gcttgaattt tagataatta gccgaaactt gtggtaatac
     2401 atccctatcc gtacttactg acttgccata tttcgaatga atttgaccat agttaataac
     2461 tggtattcca tcttcaatta aattctcttt ggtgatggtt aaacctttat tcgtatctaa
     2521 aaaatactta aacttcgtta tcccccactc ctctggcact tccccaatcc actcgatacc
     2581 actatctttc atcctagtca tgtttgaggt cctccaagag tgcttgtaat tggtcttcta
     2641 gatcatagaa ttgtttgagc aggtcttctg ccttttctgg ggcttggtat tggtagaaat
     2701 agcgggtaaa ggggatttct gctcccagct tgttttcctc ccaccagaag tgagcatctg
     2761 ggacatgagg gtagacctct cgttcaaaat aagtctccac ttcttccgat agcttgacaa
     2821 tctcagaatc cttagtagtc ttgtcataga cgataccgtc cgcaatctca cccagcttgt
     2881 ctttcttttt cgttttaata acctcagcag tcttgtccat ctcactcata gcaagggcta
     2941 gggcattgag attggctggg gtcagcttga cttctgacaa aaggtctttc agtacggctg
     3001 taaaggtctc aaagtttgga taggtagctt ccgacagacc ttgacggagg gcttgaagga
     3061 tttcctcttg ctttattcta ccttcttcaa gcttttgcag ttccttatct tgcttggctg
     3121 tgcgtggctc catttccagt aattcttggt acttgtactc atcaaagagc ttggcaaaaa
     3181 actggaccga ctggacactt tccagacttt tctccgtgat ttctccacga cgttgtagag
     3241 gctgcatgac caggtattct ttataaagaa attccttgct gtcaaagatt ttcacacggt
     3301 cattttcctc aaagtcatgg taccactgga gaatatcctt gatattgtcc tgtgacagct
     3361 cacggcgttt ttgtcccagc gatttccgca agggaacaaa ttcattggtc gcatcgataa
     3421 attggatctt accctgtctt tctggactct tatccttatt ataaagccag atatagatac
     3481 caattccagt attgtagaaa aattgccccg gtagagcgac aatagcctcc aacaaatcat
     3541 tttctaagat ataccgtcgg atttggcttt ccccagatgt cgttccacct gagaataggg
     3601 gcgaaccgtt tgaaatgata gcagctctgc cattttcctc caacttcgcc aaagcatgta
     3661 gatggaagag caactgagca tcgcctgtgg taggtgtgtt gacgaaacga ccttccctgc
     3721 cttctgtcga ctcaaagaga gcctgatcat ccttgaccgc ctgctctact ccgtcatccg
     3781 catccttccc tccccaagac tgaccaaagg gtggattggc aatgacaaag ttcatcttct
     3841 tatcgtgaaa tgggtctgaa tccttgagcg tatccgtctt aacaaagtaa tccgactctt
     3901 cctgacgaat cagcatatcc gccttgccaa taccgtaggt ttcagctaga tactcctgac
     3961 caaacaagcg aacgttgacc ttgggattga gctgttgaat atagcttttg gcagttgcca
     4021 gcataccgcc tgtacctgcc gccatatcta agaccttaat ctctttattg tcaacaaaaa
     4081 gctcttcatc tgcctccatc aagagcaggt tgaccatgag agcgatgact tcccgtggtg
     4141 tataatgaga acctgcctcc tcattttcag aaaagcggcg gataatatcc tcaaacatat
     4201 agcccatccg catagagtca acggtgctgg gtgataaatc aagttccgag aatttcttca
     4261 ctactgtaaa gagacgccct gtacttgcca aggtatccac ctgctcctta aatttcaaat
     4321 tctcgataat atccttgact cgtttggaat aaccatctag gtaatccaaa aagttatcct
     4381 tgatagcatc gggttcattc aagagattct ttagtgtatg cttgctggta ttgtagtatt
     4441 tatagcctgt aagagactca aagattttct ctggtgttga cggattcgac tggaactgag
     4501 ccaacacttt ttccttggtc ggtaaaaggg cagcttccaa gcgagccaat acaaacatgg
     4561 gaataatgac atcacggtat ttatctgctc ggtaagcacc tcgtagggtg tttgcaatag
     4621 accagactaa attgacgtcc ttgctgatgt tgacatcatt tgcttgaaac agagggagtt
     4681 tcccttttat agctgacata atttctccta acactcgtct aaaatatacc tctattatat
     4741 caaaaatcgt acactactat aggaagcacg aagcgtttag caagagattt tttatcgttt
     4801 tcttaccact tccttgatgg gcaataacta aaaatcctcc cacaaattgc ggaaggatag
     4861 ttattagtca acagcctctt cttcctccaa gacctgacga atcaagacca tgacctggtt
     4921 tcgatccagc ttccactggg cccgctcatc cttgtcaaaa gtacgattcg agagaaaaat
     4981 cgcagctttc tgcaagggac gattgtacat gataaaggtc cccgtatagc ctgtgtgcga
     5041 caaccagtcc cctttcttat cccaggccaa cgaccgcttg cgcttgtcat caaagccata
     5101 gtcctggggc aaatctgccg caaagtcagc cgtcagatag cgctccaaaa agatttccag
     5161 atccttgacc gtcgaaaaga gacctgcact acccgcgtga acacccaaga cacgcgcctt
     5221 ggggtcatgt accagacccg ctttgacgcc acgtaccgtc ggtaccgcct gactgactgg
     5281 tccaaaggag gtttgagaca tgccaaaggg ctctagaacg tctcgactga tcagctggtc
     5341 cagactgtct ctacccagtt cctccaacaa aaagcccagt aagagaaaat taatgtctgt
     5401 gtagaggaaa tctttcctat ccgttacggt aatcttcaaa atcgcttcct tgagctggtc
     5461 ggcatccaga ctatcccgat tgggaatgaa gggatcgata ccactagtat gggtcaataa
     5521 ttgccgaagg gtgacctgac tatccgcaaa agcaggataa taagactgca aggtcctatc
     5581 gagctccaaa gctccgctat taaccaaaaa agtcgcaaga gtccccacac caaccacctt
     5641 ggaaacagac gccaaatcat aggtcaaacc cgcctcaact ggtagctgac catcctgggt
     5701 ccccaaataa tactcctgcc actgaccctt agaaaaaaga gccagactgg caccaggata
     5761 gactccttgc ccaatctgct ctgaaatctt gtctaaaatc gcttgtctca tttttcgaac
     5821 cacaattcaa tactacttgg atcaaccgtt tgaataaagc ttgctttttt atctttaaag
     5881 aacggaccct ctaactggct ttccaaatgc gcccaatcaa agtcctgctc gacgggaaaa
     5941 cgcaagcctt ctaaatccca aacttgttct gcaggagtta ataaatcctt accttctgct
     6001 ccaacaaaat gcaaaaaggc ttgttgaggt aggatagcct cataatagtc ttggctgata
     6061 ctagcctgtg gggtattaat ccaaatagac tctactgtaa aagcggtcag accagaaaag
     6121 tcatcctgca tcttaaatgg aacaggcgga aggattgctt ttaggtcatc aacagatgct
     6181 tctgcatgta aaaggaaggt gtctccttct ggcgacacag cttcaaaacc atagccattt
     6241 tttccttggt agagcttact atactgtgac ccttgcgcca gtaaagcttc aatttcagag
     6301 gcattgtcta cttttatcac aattttattc aattttttaa gcccttcgac agcacgggtg
     6361 cgattaccag gagattctgt caaaacgagc ttcgtttctg ggcttgttct atctccaaaa
     6421 tcagcaaaag aaccatcttc tagcttggtt ttcattccta gatttttttc taaaaatcct
     6481 tgattaatag ccctattatt aatacgtaaa acagggacta tagcttcatt ttttctcaac
     6541 acgatacatt tcactcctca gtcattctac aatattgtat aaaaaatttc gtcattttac
     6601 aactaattgt atcgtcgttt tatacattaa tatctttata tatactgata atttttagac
     6661 aaacactagc ttatcagata taatagctat tatagactat tatcctaaaa aagaggagaa
     6721 tttatgcgct ttaatcaatt ttcttttata aaaaaagaga cctccgtcta cttgcaagag
     6781 cttggtgctc taggatttca actgattcct aatgcaagta gtaagacaaa tttagaaacc
     6841 tttgtcagaa agtgccattt cctgacagcc aacaccgact ttgccctgtc caacatgatt
     6901 gcggattggg agacagatct tctgaccttc ttccagtctg accgtgagtt gacagacctg
     6961 attttctatc aagtggcctt tcagttgcta ggcttcgtgc ctggtgtgga ttatacagat
     7021 gtcatggatt tcgtggagaa aagcaatttc cctgtcatct atggagatac gattgacaac
     7081 ctctatcaac tgctggctac tcgtaccaag tctggaaaca ccttgattga ccagctggtc
     7141 agcgacgacc tgattccaga ggacaatcac taccacttct tcaacggtaa gtcactagca
     7201 accttttcaa ccaaaaacct cattcgagag gtggtttatg tcgaaacgcc tgtcgatacg
     7261 gctgggactg gccagacaga tattgtcaag gtatccattc tccgtcctca ctttgacgga
     7321 aaaatccctg cggtgattac caacagtcct tatcatcaag gagtcaatga agttgccagc
     7381 gacaaggccc tgcacaagat ggaaggggag ttagcggaaa aaccagctgg caccattcaa
     7441 gttagtcaaa ccaagattaa caaactagac ttggaccagc gagagctacc tatcagccct
     7501 gccaccgaaa aactaggtca catcacttct tactctctca atgactactt cctcgctcgt
     7561 ggtttcgcca gcctccatgt gtctggtgtc ggtacgctga gctcgactgg ctacatgaca
     7621 tctggcgact accagcaggt tgagggctac aaagcggtga ttgactggct gaacggtcac
     7681 accaaggcct acacagacca tacccgctcg attgaggtca aggccgattg ggccaatggt
     7741 aaggtagcga cgacgggact gtcttatctg ggtaccatgt ccaatgcctt ggcaacaact
     7801 ggcgtggacg gattggaagt cgtcatcgca gaagcaggga tttcctcttg gtacgactac
     7861 taccgtgaaa acgggctggt gaccagccct ggtggctatc caggcgagga cttggacagc
     7921 ttgactgccc tgacctactc caagagtcta caagcaggcg acttcctccg cagcaaagaa
     7981 gcctacgaaa aaggcttggc tgccgaacga gctgccctgg accgcaccag tggcgactac
     8041 aaccagtatt ggcatggccg caactacctg ctccacgctg ataaggtcca gtgcgaagtg
     8101 gtctttaccc acggctcaca ggactggaat gtcaagccaa tccatgtctg gaatatgttc
     8161 catgccctac ctagtcacat caagaagcac ctcttcttcc acaacggtgc ccacgtttat
     8221 atgaacaact ggcagtctat cgacttccgc gagtccatga acgccctgct cagccaaaaa
     8281 ctcctgggct acgagaataa ctaccaactg ccaacggtca tctggcagga caacagcggc
     8341 gagcaaacct ggacgacctt ggacaccttt ggcggtggac aagaggctgt cttgccactg
     8401 ggaactggaa gtcagaccat ttccaatcag tatgcccaag aagattttga ccgctacggc
     8461 aaatcctacc ctgccttcca ccaagacctc tatacaggca agcccaatca aatcagcatg
     8521 gaactgcctg taacagagga cctcttgctt aacggacagg tcacgctgaa actccgtgtc
     8581 gcttcaagtg tggctaaagg cctcttatct gctcagctat tggacaaggg aagcaaaaaa
     8641 cgccttgccc caatccctgc gcctaaagca agattgagtc tagataacgg tcgttaccat
     8701 gcccaagaaa atctgctgga gttgccttat gtggatatgc cacaacgctt gataaccaag
     8761 ggctttatga acctgcagaa ccgcaccgac ctgatgactg tcgaggaagt ggtgccggag
     8821 cagtggatgg atttgacctg gaaactgcag ccgactattt atcagctgaa aaaaggtgac
     8881 gtcttagagc tgattctcta tacaaccgac tttgagtgta ctgttcggga taattctcaa
     8941 tggcaaatcc accttgattt aagtcaatca cagttaattt tacagcacta atactcaatg
     9001 aaaatcaaaa tcagacagac tagcttcaaa ggtttgggaa acctttggag gttggagagt
     9061 gaacgaagtt cgtttctcca agagcagata tacccctgct actttcttat tttatggtag
     9121 caggctgtca agctccactg gagcttgaca ctcatcaaat caagtcaaca acgtctgatt
     9181 ttaagtttcg aagagtataa tattgatttt cagttctaaa aagaggctgg gcgtttccgc
     9241 cctgcctctt tattgatatt tcataatggt ttagatttga tctttagatt ttttgtttat
     9301 agctgtagcg actactgcca agctaattcc agctaaacca agacctacta aggataggtt
     9361 attgcgttgt tcacctgttg caggtagggt tgctttgttt gcagaaggtg cccccttatg
     9421 actcagtgtc ggatttgatt gtactgaagg agttattttt acttcttctt tcttcatttc
     9481 caagctacct tttacaagga tacgattttg accttcaaca acagtttctg ataataggtt
     9541 ggttgcgaca actttaccat caactatgac atcttgataa acagatactt ttttacctgc
     9601 tctcccttct tgaagaagat atgatttgcc aagcgctagg cttgcatcat atctgatttc
     9661 ttctttgata gggagagctt cttctacctt gcgttctttt gttgtgaagt ctagctttgg
     9721 tttttctgct gtttttggtg caacttctgg gactgctgtc ttaggtgcag agtctcccgc
     9781 ttttggttgc tcagcctttg gcatttcctc cttcggcatg tcttctgctt tcggttgctc
     9841 catttctggt tgcttagcct ctggcatctg tttgtcagac tctactttat cagtttttgg
     9901 ttcttctggg attggagccg gagcctctgg cattggtgcc ggaatttctt cctcggcttt
     9961 tggcgcttct gcttccggtg ttggaactgg aacttcttcc tcttttggtg ccggtgctgg
    10021 catttccgat tttggttctt ccattttcgg ctcgtccatt ggagtttccg gtactggagc
    10081 tggagttgga accccttcct cggcttttgg ctctggagcc tcttcctctt ttggaatgtc
    10141 cggtgtcgga acgggagctg gaacctctct ctcatcttta ggtgcttccg cgtcaccttt
    10201 tggtgttgga gcttctggta ctggagccgg ctcttcagct tttggctcta gctttttaac
    10261 tatctcttta atcctttcaa acgcttgttc tgcttcttga gtataatttt ccaggttact
    10321 tccaatctga ctagcataat tagcatcatc tctttgctcc aaatgtacct tatactcgtt
    10381 ttcaatttct tcattgtcag ggtattttat acgatactgg gcaacctgac gcgtcaaacg
    10441 ttccaactta atatggtttc taaagtcaac taaaccttca atatttggaa ttttggaatc
    10501 ttcctccttc aaagtagaag caagatccat ttgacccttt ccatatttta aattatcgtc
    10561 ccacaagtat ttttgaaatg agtatttaga actatcatat tcaggaacct tcttcaattc
    10621 ttccaagtcc atttttagct cttccacaag ttctttgagg tgttgaagag gtgtttttgt
    10681 agtctctgta gctgttgaag aatctgtcat cgcaaaagcg gttggtgtcg aaattcccgc
    10741 cccaagtaaa caagtggcaa ttagcaccga gcctacgccg actttaaatt tacgaatact
    10801 atatctgaat tttttatttg cagtttccat ttctataagt cctaatcata ttttatttat
    10861 attactattg taccatgata ctcaggcggt tagatgtgtt ttttatgtgt ttaaattcta
    10921 ctgaaagact ctgtttcttc atcattgaat agatgtgact atttttccaa tggatgtata
    10981 atcacaccct gcaccacacg attgacggtg cctgttggag atggtgtatc tggcaagttg
    11041 ttgcacttaa tggctgccat aatagatacc gtttgggcaa agatgatgta agggaaggtt
    11101 aggaaaacat ctggcagatc tgctccgcct tctgccaaga caaagttagc tgcctctgta
    11161 tctgctagct tgtcagccga caatgccact atccgctctg ctatgccatc accatgaact
    11221 tcattaagca agtccacatc atactgacga gtgtaggcat cgtttgaggc aaagaggaaa
    11281 atcaaggtct tttcagtgat gaaggatttt ggtccatgac ggaaaccgag tggtgactcg
    11341 tacatggtcg caattttgcc tgctgtcaat tccagaattt tcaactgagc ttcgtgggca
    11401 agaccataga aaccacctga accgaggtaa atcactcgct caaaatcaag gttaatcagg
    11461 tcttgcacgt agtcttcacg gtccaaaaca tcttgaccca gacgggcaat gatctcaacc
    11521 caagcagctt tttcttcttg actggctggc gagaagacga ggagggctgt cagagccata
    11581 cagctgtaag aacctgtcat ggcaaagccc ttatcgtttg aaccagccgg ttgcaagagc
    11641 aagagattgt ccgaatctcc ttcggctgcc agagccaatt tgccctctgg cgcacaagta
    11701 atagtaactt gataaagctg atcaaccaat tgcttggcaa cttctactgc tgccacactt
    11761 tctggtgaat tgcctgaacg ggcaaaggat accaaaatcg ttggcacatc tgcctgtaaa
    11821 tagtcatgtg ggcgactaac cagctccact gtaccaatag cagaaaaacg aatgtgtttc
    11881 aagtcattga cttggttgag gtagttggca atgctttgcc caacaaagtc agaagtccct
    11941 gcacctgtaa aaacaacgtg aacaaagtca tgtttttcct tgattgattt tagaaaactc
    12001 tcgatttttt ccaattggtc aagatagagt tgataagcct ctttccacaa gccaggctgt
    12061 tggtaaatct cagtggctgt gatatgggcc cccaattttt ctaattcttc ttttgctaaa
    12121 cggaacatag ctcctccttg atttctggtt ataaccagtt tttcttatat tatagcgaat
    12181 ttatccctca aagtcaattt aaaatagatt aatatgtcaa atttaccaat ttatatccga
    12241 tattgctgac tataacttat tttaagaagg tagcattatc tacataaaac atgttataat
    12301 atttactacg cctctgcctt tgaaaatttt taacaataag gcaaaataag gcaaggaaaa
    12361 attacaaaca aggtctaaac ccttgatacg aaaggaatct taaaaatctt atgatgaata
    12421 tgcaaaacat gatgcgccaa gctcaaaaac ttcaaaaaca aatggagaag agccaagctg
    12481 agttggctgc tgctcaattt accggtagct ctgtacagga cttggttact gctactttta
    12541 ctggcgacaa gaaattggtt tctattgact tcaaggctga cgttgtagat gcggatgata
    12601 ttgaaactct gcaggaaatg accgtccaag ccgtcaacgc tgcacttaca aaagtcgacg
    12661 aggcgactca gaaaaaacta ggtgcctttg caggtaaatt gcctt
//
LOCUS       DASFRC010000059        12523 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.059, whole genome shotgun sequence.
ACCESSION   DASFRC010000059 DASFRC010000000
VERSION     DASFRC010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 12523)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12523)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12523
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.059"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(341..3194)
                     /locus_tag="U1087_001137"
                     /pseudo
     CDS             complement(341..3194)
                     /locus_tag="U1087_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638462.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
     gene            complement(3763..5940)
                     /locus_tag="U1087_001138"
     CDS             complement(3763..5940)
                     /locus_tag="U1087_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910563.1"
                     /note="The YSIRK form of extended signal peptide directs
                     nascent proteins to the cross-wall site, while signal
                     peptides lacking YSIRK direct proteins instead to the cell
                     pole. A large fraction of YSIRK proteins are surface
                     proteins anchored by sortase-mediated processing of a
                     C-terminal LPXTG motif; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YSIRK-type signal peptide-containing protein"
                     /protein_id="HEM4755620.1"
                     /translation="MNSKIFSLRKSKMGLVSVAIAFLWIGTGMNMETAMAEETDATAL
                     ETQLESKESSLTNTVSENAEAEEVTDEVPSEEKKSEEMEDMEEELPFIENHLEVAPIQ
                     AGDQTISGNTTPGGYVAITIDGEAITSIENILEADDKGDFSYRLSKPLAHSQTVEISA
                     LPKQFWTLEADSEERKVVVRTNRHPEAYEIPAKRLEKTSNGMHQVFIEPVFEHTSKVI
                     GHTSVKGSVYLSINGSFVSDKTLIDPKDGRFEVTFSESLAGSKFKADDRLVLSFVSED
                     GQPVITNTIVKPLVKEKVSSQMTVKPLSSATSVLEGTTFPLGRVHLYNADTSEFIMEA
                     IADETGHYKIALPALQSEDKYYRLTHNQQEDLVSVHLDTVDGSSILLDKSVMASLATY
                     LQDADMDEATDEDPIIVPKLHNKKDYIVGRTIHLNAYVRMVSSIKGKQYPPVQVDELG
                     FFGFQIQDLQLPFEKGERIRFEIIDPVTNNIIASKEEVVGQYLEDEDVMDLPFQVEKV
                     TTDHGYISGKTAPDVMIELVSTQNGEEIIGKTSTDSTGRFEFDLGSRVLKNGETLSFR
                     AFDKEGEQVAWEVVTVQKGNGHRINKPDKKDEKEEQPSKEITKNIEQSDTLEQTTLPP
                     VRQTLTDKKVEQNAEPSKEETVSIFDDSKKDMPTKQEKMARTVRDKGTKGNVSVHDSG
                     ENTQVQSLPKTGEKTSLVANIMLSIILFLFALFIGKKKITESE"
     gene            complement(6542..7477)
                     /locus_tag="U1087_001139"
     CDS             complement(6542..7477)
                     /locus_tag="U1087_001139"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000036024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese-dependent inorganic pyrophosphatase"
                     /protein_id="HEM4755621.1"
                     /translation="MSKFLVFGHQNPDTDAIASSYGWAHLEREVFGRDAEAVALGTPN
                     EETAFALDYFGVTAPRVVESAKAEGVSQVILTDHNEFQQSIADIKEVEVAAVIDHHRV
                     ANFETANPLYMRLEPVGSASSIVYRAFKENGVTPPKEVAGLLLSGLISDTLLLKSPTT
                     HTTDPQVAAELAEIAGVNLEEYGLALLKAGTNLASKSAEELIDIDAKTFGLNGNDVRV
                     AQVNTVDIAEVLERQAEIEATMTAASAANGYSDFVLMITDIVNSNSEILALGSNMDKV
                     EAAFNFKLENNHAFLAGAVSRKKQVVPQLTDAFNA"
     gene            7615..9312
                     /locus_tag="U1087_001140"
     CDS             7615..9312
                     /locus_tag="U1087_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HEM4755622.1"
                     /translation="MKFSDYTYVRPDYETIKAQFSDLTNQLAQASDLETTRTLVAAVT
                     KLLNLVDTQYNLWMIRHTIDMNDEFYNEETKFWNEYSPLFEELTTNYYRVIVQTPYKA
                     ELADILPETFFMQAENKLKTFSSAVIPLFQKENESTDEYSKLIAGAEIDFQGQTYNLA
                     QMGPFGQSTDREVRKAASAATTAFFESKEADFDRVYDELVKVRTEIAHKLGFKDYVEY
                     GYLKMNRFDYNRDMVKVYREEILKHIVPIVQNLRERQAKRLQVPSLKHYDLNLEFLDG
                     NAVPQGDPDFILSQAQDMYRELSAETGEFFDFMIEHELLDLVAKPGKNSGGYCTYIPD
                     FKSPFIFSNFNGTSGDIDVLTHEAGHAFQVYRSRWIQSPEVVWPTYETCEIHSMSMEF
                     MTWPWMDRFFKEQVDKYKFTHLASALLFLPYGVLVDHFQHEVYERPEMTLAERKATWK
                     KLQDLYLPDRDYSESEALNRGIFWYRQGHIFASPFYYIDYTLAQVCALQFWKRTQVDH
                     DETAWEDYIRICDLGGTKSFLQVVEAANLQSPFKEGALESTAKAAASWLNAVNDSDL"
     gene            complement(9341..9688)
                     /locus_tag="U1087_001141"
     CDS             complement(9341..9688)
                     /locus_tag="U1087_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM4755623.1"
                     /translation="MATFTQHTVPECPYVTTQSVISGKWSILLLHHIEEGPIRFNEMH
                     RRLTGISQATLTKQLRQLEDDGLITRKVYAQVPPKVEYELSEIGQEFKLVLQQIETFG
                     DKYINFVKSKKSE"
     gene            9844..10383
                     /locus_tag="U1087_001142"
     CDS             9844..10383
                     /locus_tag="U1087_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009732451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEM4755624.1"
                     /translation="MKNILFIVGSLREGSFNHQMAKQAESILEGQATVSYLNYKEIPL
                     MNQDFETPVLPAVQTARDAIMAADAIWIFSPVYNFAIPGTVKNLIDWLSRALDLSETR
                     GPSALQDKIVTVSSVANAGHEPMFASYQALLPFVRMQVVGEFTGTTVSPEAWGTGQLV
                     LSEEAIAGLQAQAQALLEA"
     gene            10551..11171
                     /locus_tag="U1087_001143"
     CDS             10551..11171
                     /locus_tag="U1087_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEM4755625.1"
                     /translation="MKLYYIIDAYCGWTYGFNHIFTKFMQDHPDIEIEVINGGLFVGD
                     NKKKMVDFQQAQTINKQIESYYQMSFGDNYNQLFKDKDFTMDSLGPARAYSVLKNYVE
                     TPNHAQLTLDIQALFFEDGLDLSQADSYTSLIGSYQLPTKAMEELSSNLKQPESLHPD
                     FIKAYEMGVTPFPTLLLEKDGNFFNLINQVRTVDDLEKNFQEAVAQ"
     gene            11186..11587
                     /locus_tag="U1087_001144"
     CDS             11186..11587
                     /locus_tag="U1087_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEM4755626.1"
                     /translation="MSKNQLYKNILEETYLATAQGRIEDFKSHLAADISWTEASGFPY
                     AGTYIGPDAVIENVHARLGSEWTNYSATPVDYAFSGNRVMVYGYYKGTYNLTEKSFQA
                     DFVHIYDFNAENRITHFIQIVDSALVEKAMR"
     gene            11674..12516
                     /locus_tag="U1087_001145"
                     /pseudo
     CDS             11674..12516
                     /locus_tag="U1087_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647223.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
BASE COUNT         3610 a         2675 c         2282 g         3956 t
ORIGIN      
        1 aaaaacgcat aaaatcgtgt tgctaagaac gttgatttta tgcgttttat tatatgactt
       61 atctcgatat ttttattgaa atttatgttt atgcccaact atacttctca gaatcaatga
      121 ccatatctca tctcagccta gtatagattg acagatttat tctacattcc cagttcagcc
      181 tctgcagcta ttgcgaatgg ctcgttttat attcaatctc caaagatttc ctaaaacttg
      241 gatctgtacg gagggtaaaa caattcgata cactattata ggcataatct ctactctatt
      301 aaccatatgt atatacaagt agaaattaca cgaccaacat ttactccgat tcttgcttac
      361 gttttgtacg ataaagtacc tgagctccta caagaagaga gagggcagtt aacgtataga
      421 ttggagaatc agcttgtcca gtagatggaa gggtatgtga tttctcgttt gaacgattca
      481 cgctagaaac tttctccata ttttcagaaa gacgtgattt ctgattcata gcaagctcta
      541 cctgatttgc caccgtttcg gcattcactt tatctttgat agtagaaatt ggagcagagt
      601 tatctgaatc tttaatagtc ttagaagaat ctggagtatc actattttct gctttatcaa
      661 tctcttcagt tgactctggt ttcattgggc gagacaaatc tggggtatcc gttacttttg
      721 gaatatccaa tttttgtgta cctgctgaac tgtctgtatc ttcgataagc ttaggtgatt
      781 ctggttcaac attatttttc gcgtaatcaa tttcatcggt tgactcaggt ttcattggac
      841 gtgatgtatc tggaataata atattgtccg ttgcttttgg aattgttgag tctggtttat
      901 ttgctgaatc atcggttgag tcttcgatag gcttaagtga ttctggctca acattattgc
      961 ctggttttcc ggtctcttta ggtgactctg gttgcattgg aagagttgct tctggaacat
     1021 ttggtttttc ctgcataggt gtttcaggag tccccttagg cgtttcattc tctacttttg
     1081 gcatatcaat tggcttgtca ggaacttgtg gctcaatagg aacaggaacc gaaactttct
     1141 tagttttatg gttaagagac acttttaggg atgagtatac tttcttccca actttatcat
     1201 taatctcatg gctaatctct gtacttacaa gtttttggga atcttttttc tttttatctt
     1261 tcagttgtaa ctgataagtt aaagaaagtg gttgattagt ctgataagcc ttgattaagt
     1321 cttctttatc taagttccaa gtaatagttg ttttcgagct agtaatccat gacagccaga
     1381 acgttgaaga attcttttta atacttactt tagggtcttt gggttcttta acaatttcaa
     1441 cattatcttc aagagtatct accaatgtca ctttagtcag tacatcttta aatttttctg
     1501 caacattctc atcaacactt aaaaacttct tatcatcccc agacattttt ttcaagtatt
     1561 catcaaattt atttttattc ttttcttcgc cagctttgtc tttggtcaca tcaacagcgt
     1621 agacatgaat accattttta gtagcaatct tggcctctgc ttgagcagag aggttgtggt
     1681 tgttaaaaat attttttcta ccgtagaaaa tataatcaac gagggaattc gcaaataaat
     1741 caattgcttt ttcagaagta ttcgttaaac cgagcttttc agcgatatag ctaagagtgt
     1801 ttgtaggtaa ctcagctttt tttaactcag ttgttaaatt atgttttatc ttgctaacaa
     1861 tttgatttct aaatgtcaac ggctcaactt tacgttcata aaagctacgg aaatgataac
     1921 cttcaccaat ttgtttctcg taattgaaat ttttttcttc taactgcgaa ctgtctacat
     1981 caaccaaatt aatatagtct aacggatctt ttgcaattat tcctataagc tttgttattc
     2041 ctgctatagt ggatacatca tctaaagctt tatcgaaacg tgtaatccca actttgttca
     2101 aaaaacttat tagactcttt gcatcatcca acaagtttgc cctgcgaaca gtcacatcaa
     2161 atgtaaatgg ccaaggcaag agtggatttg tatgtacaac cttattttcc tcaatggtct
     2221 tataagtagg ttttgatttt acatcatccg acaaatcata actaaatgta gactcccctt
     2281 gtgacagaag tacaatatgt ttgcgtttcc ccgagttctc gctttctaaa atgcgacgtg
     2341 cttcatggat tgctccctgc atatctacgc cccaattgta attttgttca gcatcagtga
     2401 aaagcttctc aaccgtagtt tctacattag cactggtatg gtaacttctt gagcttcaga
     2461 taacttgcgg ttgaaaccga ttacacgcac agagttacga gaattatgat cattggttgg
     2521 gtcagtcatc ttttcgacaa gctttataat gttatcttta gctgtttttt agcatcttca
     2581 tccatttttt tatatgtatc caccaagaca actatttctg cacccttgtc aatttctttc
     2641 ggcacaattt gagttgttac tgtgacaact ccctcttgat ctacttctgc tgttcgagaa
     2701 actgtaaaaa gctctttaga agttttgtcc actgtactag atactgtttc cgttggtttt
     2761 tcaaccttag tagaatagtc gtctacttcc ttctcctcat actgaacggt tcgttcttct
     2821 ttttctgttg ctttttcttc agaagaacta gtgttttcag caacttgcac ttctgattct
     2881 gaagcgtttt cattcgtcaa tgcctcagga gaagcagatt ctgcattcga ttttggtaag
     2941 tccaaagtag aagaggagtc aaccacctct ccttccttgt tttcattagc ttgggcaact
     3001 tcagggtctt caacgacagc agtagaccta atcagagaag tgctatctgt ctccgaagtt
     3061 ttttctaaag taggtgtttc tgcatatact gtcacagtat ttttgggata gagtgttccc
     3121 gataaagcta cccctgctcc tagcgaaaca agtccaattg atagcttccg caaagtgaat
     3181 ttaggatgat tcattatgat accttctcct tgttctctat aaatttagaa tgtattttca
     3241 cccttcttta ggtattttca aaaaaggaag tatggatgtc aatggtaaat aactttagta
     3301 taattttgtt caacaagcgt agagcttttg gaaaaagaat gggcaccttg tgtattcata
     3361 aggtgcctaa gtccttctgt taactgctta cttcacctat caagtcaagc aagcatgatt
     3421 acaactcaaa gttcctattt atcattaaca atgaccatat cacaaaatgt gcgagtctat
     3481 tactacataa ctcattctac catataattt aaaaacagaa tttgtttttt ctctatcgtt
     3541 tgtttatgtt tattctatta caaaaatgat aattggtctt tgagtctgtt atcacacaca
     3601 tttatacaag tgataaatat tgcaatgagt cttcaaactc tactttcacc tctataagca
     3661 aataattcat tgaaagaaaa attttaactc ttttaattta aagctacaca atgcctctca
     3721 tctgtcgcaa acgaattttt gagagagctt tgtcatcgcc ttttactcac tttctgttat
     3781 ctttttcttg ccaatgaata aagcaaataa gaataatatg atcgataaca ttatattggc
     3841 aaccaagctc gttttttcac cggtcttagg caggctttga acttgggtat tctcaccact
     3901 atcatgcaca gatacgtttc cttttgtccc tttgtctctt acagtacgag ccattttctc
     3961 ttgcttagta ggcatatctt ttttcgaatc atcaaaaata gaaaccgttt cttcttttga
     4021 tggctctgca ttttgctcta cttttttgtc agtcagcgtt tggcgtacag gtggcaaagt
     4081 agtttgctca agtgtgtctg attgttcgat atttttggta atttctttgc taggttgctc
     4141 ttccttctcg tcctttttat ctggtttatt aatgcggtga ccatttcctt tttgaaccgt
     4201 tacgacttcc caagctacct gttcaccttc tttatcaaac gctctaaacg ataaggtttc
     4261 tccatttttt aaaacacgac tacccaaatc aaattcgaat cgacctgttg aatcagttga
     4321 agttttacca attatctcct cgccattctg agttgatact agttcaatca ttacatctgg
     4381 agctgttttg ccactgatgt aaccatgatc tgtagtgact ttttctactt gaaatggtaa
     4441 atccatcacg tcttcatctt ccaaatattg ccctacaact tcttccttac tagcgatgat
     4501 attatttgta accgggtcaa tgatttcaaa gcgaattctc tcaccttttt caaaaggcaa
     4561 ttgtaaatct tgaatttgga aaccaaaaaa tcctaattcg tccacttgaa ctggaggata
     4621 ctgttttcct ttgattgacg aaaccatgcg aacgtaggca ttaagatgta tcgttcgacc
     4681 gacaatataa tcttttttat tatgcagttt aggtacaatg ataggatctt catctgtcgc
     4741 ttcatccata tctgcatctt gtaaataagt tgctaaagat gccataacag atttatccaa
     4801 taatatactt gaaccatcaa ctgtatcaag atggacagat accaagtcct cttgttgatt
     4861 gtgagtcaat ctgtagtact tatcctcgga ttgtagggca ggcaaagcaa tcttatagtg
     4921 acctgtctca tcagcaatag cttccatgat aaactctgaa gtatcagcat tgtatagatg
     4981 cacacgacct aaaggaaatg tagttccttc caaaactgaa gtcgcacttg ataaaggttt
     5041 tactgtcatt tgtgaagata ctttttcttt taccaatggt tttacaatag tattagtaat
     5101 caccggctga ccatcttctg atacaaaaga caaaaccaat ctatcatctg ctttaaattt
     5161 tgaacctgct aaactctcgg aaaaagtaac ctcaaaccgt ccatctttag gatcaattag
     5221 tgtcttatca gagacaaaac taccatttat tgatagatag actgaacctt tgacagaggt
     5281 atgaccaata actttgctcg tatgttcaaa aactggttcg atgaacactt gatgcattcc
     5341 attagatgtt ttttctaatc tttttgctgg aatttcataa gcctctggat gtcgattagt
     5401 cctcactact accttacgct cttcagaatc tgcctctaga gtccaaaact gtttcggcaa
     5461 agcactaatt tccacagttt ggctgtgagc aagtggttta ctcaaccgat aagaaaaatc
     5521 tcccttatca tctgcttcca aaatattctc aatagaagta attgcttccc catctatcgt
     5581 aatcgctaca tatccaccag gagtggtatt ccctgagatg gtttgatctc cagcttgaat
     5641 cggagcaacc tctagatggt tttcaataaa tggaagttct tcctccatat cctccatctc
     5701 ttccgatttt ttttcttcac tcggtacctc atcagtcact tcctcagctt cagcattttc
     5761 cgaaactgta ttggtaagcg atgattcctt gctttctaat tgagtttcaa gagctgtagc
     5821 gtcagtctcc tcagccattg cggtttccat attcatccct gtaccaatcc atagaaaagc
     5881 aattgccacc gaaactaaac ccatcttact ttttctcaac gaaaaaatct tgctattcat
     5941 cttttctcct tatatctgta ttaacaatta acgacacata ttgtcctagt tttattataa
     6001 aaaaaacatc tcatagaaca ttgtttttca ttagtttttt atctgtttta cagttgcctg
     6061 taatatatag tatgctacat ttcgcaaaaa ctttgctggt tctcatcgtc atttagtttt
     6121 tcttttatta cttctgtaat caatttgaat tgacagaacg attagaagca ctttacttgt
     6181 aaacaaaatt tctaaattat ggcacattca aagtaaaaaa ctagcgcctg aagttttcta
     6241 tgatacagat acttgtttat ctcggagtgc tcctttaatt cgtcaactta tactcaatga
     6301 aaatcaaaat caaactaggc gacgcagata cagatagaac tgaagttcat caaatcaagt
     6361 taacaacgtc tgattttcga agagtattaa ataagagtgg gtttatttgt catgatgcca
     6421 cttgtttatt ttgttaacta tcacttcata aaacatgatt gtcctcataa taaaaagcac
     6481 ccgaaggtgc tagataaggc cttcctaccg acttcacgtt cgaggtcggt agaaaacttc
     6541 attaggcgtt gaaagcatct gtcaattgtg gcaccacttg tttcttacgg gaaacggcac
     6601 ctgcaaggaa agcgtggttg ttttccaact tgaagttgaa ggccgcttcc accttgtcca
     6661 tgttgcttcc tagggcaagg atttcagagt ttgagttgac gatgtccgta atcatgagga
     6721 caaagtcaga gtagccattt gctgcggaag ctgctgtcat agtggcttca atctctgctt
     6781 ggcgttccaa aacttccgca atatcaacag tgttgacctg agctacacgg acgtcattgc
     6841 cattcaaacc aaatgttttg gcatcaatgt caatcaattc ttctgctgac ttgctggcaa
     6901 ggtttgtacc agctttcaag agtgccaaac cgtattcttc caagttcaca ccagcaattt
     6961 cagccaattc agctgctact tgtggatctg ttgtatgagt ggttggcgat ttgagcaaga
     7021 gagtatctga aatcaaacct gataggagaa gtccagctac ttcttttgga ggtgttactc
     7081 cgttttcttt aaaggcccgg taaacgattg atgatgctga acctactggt tccaaacgca
     7141 tgtacaatgg atttgccgtt tcaaagtttg cgacacggtg gtggtcaata acagctgcca
     7201 cttccacttc cttgatgtct gcgattgatt gttggaattc attgtggtct gtcaagatga
     7261 cttggctaac gccttctgct tttgcagact caaccacgcg cggtgcagta acaccaaaat
     7321 agtcaagcgc aaacgctgtt tcttcatttg gcgttccaag tgcaactgct tccgcatcac
     7381 gaccaaacac ttcacgctcc aagtgagccc agccgtacga tgatgcaatg gcatctgtat
     7441 caggattttg gtgaccaaaa actaaaaatt tagacatgtc tacaacctca tttttctaat
     7501 aatctcctac attttaccat aaatagaaag acttgtgaac atggacgggt cgggatttgc
     7561 caaacgtttt caaaaagagt aagatagaag gtagcaatac aaaaggagaa acatatgaaa
     7621 ttttcagact atacctatgt ccgtccagat tatgaaacta tcaaggctca attttctgac
     7681 ttgacaaacc agttggctca ggcaagtgac ttggaaacaa ctcgtacact tgtggcagcc
     7741 gttacaaaat tactcaactt ggtcgatacc cagtacaatc tctggatgat ccgtcacacc
     7801 atcgacatga acgatgagtt ttacaatgaa gaaaccaagt tttggaatga gtattcgcca
     7861 ctttttgaag aattgaccac caactactac cgtgtcattg tccagacacc ttacaaggct
     7921 gagcttgcag acattttacc agaaaccttc ttcatgcagg ctgagaacaa gctcaagacc
     7981 ttctcatcag ctgtcattcc cttgttccaa aaggaaaatg aatcgaccga tgaatacagt
     8041 aaactgattg cgggtgcaga gattgatttc caaggtcaga cctacaacct ggcacaaatg
     8101 ggaccattcg gtcaatcaac cgaccgcgag gtccgcaaag ctgcttctgc tgccacaact
     8161 gcattctttg aaagcaaaga agctgacttt gaccgtgttt acgatgaatt ggtcaaggtc
     8221 cgcacggaaa tcgcccacaa acttggcttc aaggactatg tggaatacgg ctacctcaag
     8281 atgaaccgtt tcgattacaa tcgtgacatg gtcaaggttt accgtgaaga aatcctcaag
     8341 catatcgtac cgattgtgca aaatcttcgt gaacgccaag ccaaacgctt gcaggtacca
     8401 agcctgaaac actacgacct caatcttgag ttcttagacg gaaacgctgt gccacaaggt
     8461 gacccagact ttatcctcag ccaggcccaa gacatgtacc gtgaattgtc cgcagaaaca
     8521 ggcgagttct tcgatttcat gattgagcat gaactcttgg acttggttgc aaaaccaggt
     8581 aaaaacagcg gtggctactg tacctatatt cctgacttca agagcccatt catcttctcc
     8641 aacttcaacg gaaccagcgg tgatattgat gtcttgaccc acgaagcagg tcacgccttc
     8701 caagtctatc gttcacgttg gattcaaagt ccagaagttg tttggccaac ctacgaaacc
     8761 tgtgaaatcc actccatgtc tatggaattt atgacgtggc catggatgga ccgtttcttc
     8821 aaggaacagg tggataagta caagtttacc cacttggcaa gtgcccttct cttcttgcct
     8881 tacggtgtct tggtggatca cttccagcac gaagtctatg aacgcccaga gatgacacta
     8941 gcagaacgta aggcgacttg gaaaaaactc caagacctct acttgccaga ccgtgattat
     9001 tctgagtcag aagccctcaa ccgcggtatc ttctggtatc gtcaagggca tatttttgcc
     9061 agcccattct actacattga ctacacgcta gctcaagtct gtgccctcca attctggaaa
     9121 cgcacgcagg tagatcacga tgaaactgca tgggaagact acatccgcat ctgtgatttg
     9181 ggcggcacca agtccttctt gcaagtggtt gaagctgcaa acctccaatc accgttcaaa
     9241 gaaggtgccc ttgaaagcac agccaaggct gctgctagct ggctaaatgc agttaatgat
     9301 agcgacttat agcatacaaa aatctgaatg agatatgaac tcattcagat ttttttgatt
     9361 tgacaaagtt gatgtattta tcgccgaaag tttcaatctg ttgaagaacc aacttgaatt
     9421 cctgaccaat ctcgctcagt tcatattcca cttttggcgg aacctgtgca taaaccttcc
     9481 gagtgattaa accatcatct tctagctgac gcaactgctt ggtcaaggtt gcttgggaaa
     9541 tccctgtcaa tcgacggtgc atttcattaa accgaatggg accttcttcg atatgatgta
     9601 gtaataagat actccatttc ccagatatga cactctgagt ggtcacataa ggacactccg
     9661 gaaccgtatg ttgtgtgaaa gttgccataa tttctccttt gttttccctt gatactacac
     9721 attacttcac aaaaagatag tgactattta aaaaaatcgt acttgtaata tttttagtac
     9781 ctgttacaat aataccataa actgcgaaag cagaaaagaa aaaattgtta gaggtataac
     9841 atcatgaaaa acattttatt tatcgtcggt tcactacgtg aaggttcatt caaccaccaa
     9901 atggctaaac aggctgaaag catcttagaa ggtcaagcaa ctgtatctta tcttaactat
     9961 aaagaaatcc cgcttatgaa ccaagatttt gaaacaccag tcttgccagc tgtccaaact
    10021 gcacgcgatg cgattatggc tgcagatgct atctggattt tctcaccagt ttacaacttt
    10081 gctattccag gtactgtgaa gaacttgatt gactggctca gccgtgccct agacttgtca
    10141 gaaacacgtg gcccatctgc actacaagac aaaattgtta ctgtatcatc tgttgccaat
    10201 gctggacacg agccaatgtt tgctagctac caggcactcc taccatttgt tcgcatgcaa
    10261 gtcgttggtg agtttacagg tacaactgtc agtccagaag catggggaac tggacagttg
    10321 gtattgtcag aggaagccat cgccggtctg caagcgcaag ctcaagcttt gttagaagct
    10381 tagattccac aggtcaatat acatccttct gtgaccttta tcgagttgaa gatgataaaa
    10441 ttgcagaact ccgggatgtt gttgtgccaa tcgaggaaga tttcaaaact tccaatagca
    10501 atggtaaatt ctaatcaaaa accaagaaaa taagatgaaa gaaaattaaa atgaaactat
    10561 attacatcat cgatgcttat tgtggttgga cctacggctt taaccacatt ttcacaaaat
    10621 tcatgcaaga ccatcctgac atagaaatag aggtcattaa cggaggcttg tttgtcggcg
    10681 ataataaaaa gaaaatggtt gatttccagc aggcacagac catcaacaaa caaatcgaaa
    10741 gctattacca aatgtctttt ggcgataact acaatcaatt gtttaaggat aaggacttta
    10801 ccatggactc ccttggtcct gctagagcct actcagtctt gaaaaactat gttgagacac
    10861 ctaaccatgc tcagctaaca ttagacattc aagccttatt ttttgaagat gggttagacc
    10921 tcagtcaagc agacagttac accagcctaa tcggtagcta tcagttacct acaaaggcta
    10981 tggaagaact atcaagcaac ttgaaacaac cagaaagtct acacccagac tttatcaagg
    11041 cttatgaaat gggggtaacc cctttcccaa ccttgttact cgaaaaagac gggaacttct
    11101 ttaatcttat taaccaagtt cgcacagtag acgatttgga aaaaaatttc caagaggcag
    11161 ttgcgcaata gaaaagaaaa tacctatgtc aaaaaatcaa ttatataaaa atattttaga
    11221 agagacttat ctagctactg ctcaaggtcg aatagaagat ttcaagagcc atttggctgc
    11281 tgatatctct tggacagaag cttcaggctt tccctatgct ggtacctata tcggtccaga
    11341 tgcagtgatt gaaaacgtcc atgcaagact aggttctgaa tggaccaatt atagtgccac
    11401 acctgttgat tacgcctttt caggaaaccg tgtcatggtt tatggctact acaaggggac
    11461 ctacaacctt actgagaaat cctttcaagc agactttgta catatttacg attttaatgc
    11521 tgaaaataga attacacact ttatccaaat cgtagatagc gcacttgttg agaaagctat
    11581 gagataaaaa tcaattttca aaagtctatt cgtcacacat tactaagtaa ctcgaaaatt
    11641 cctataaatt gtatcagaaa gccaggtatt cccatgtaca attcccaatt tgaactgggc
    11701 ctagttgccc tcaatgttcg caatctgaag cttcaaagtc tgttttacca gcaggtattg
    11761 ggcctccaag ttctgactga aaactctaaa cagattgacc ttggtgtcag acagaccacc
    11821 cttgtccgcc tgattcaaac agagcagaag ggcgaagtta gccacagcta cggactttac
    11881 cacttggcta ttgtcctacc tagccgagag gacttaggta ccattttccg ccactttatc
    11941 gacaacaaag ttcccctcca aggcgcaagc gaccacggtt acagcgaagc catttaccta
    12001 gccgacaccg aaggcaacgg tatcgaaatt taccgcgacc ttccgcaaga ctcttgggat
    12061 gtccgcccag atggacgaat tgttggcatt actgagccta tggatgctga aacaatctat
    12121 gctttaggga aaaaagctga cgcagcctat cagatgccgc ttagcagtcg catggggcat
    12181 atccatctat ccgtccgaga aagcgctgct tctagccgat tttaccaaga agtcctagct
    12241 gtcgaggata aattctccgt cccatctgca gcctggttag cttctggcga ctaccatcac
    12301 cacctagctg tcaatgaatg aggtggaaaa aatctgaaaa ccagacaaga aggcatgcca
    12361 ggactttcct actatacggt catctattcc aatcaagaag cttttgaagc aaccttgaat
    12421 cgtgccattg ctgcaaacct aaaccttcaa agactagaca atagcgcagc ctttgttgat
    12481 gtggatggta taaaaactaa gcttgtttta gaataatacg aaa
//
LOCUS       DASFRC010000060        12499 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.060, whole genome shotgun sequence.
ACCESSION   DASFRC010000060 DASFRC010000000
VERSION     DASFRC010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 12499)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12499)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12499
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.060"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(7..1740)
                     /gene="ptsP"
                     /locus_tag="U1087_001146"
     CDS             complement(7..1740)
                     /gene="ptsP"
                     /locus_tag="U1087_001146"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016397822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HEM4755627.1"
                     /translation="MTEMLKGIAASDGVAVAKAYLLVQPDLSFETVTVEDTNAEEARL
                     DAALAASQNELSLIRENAVASLGEEAAAVFDAHLMVLADPEMIGQIKETIRAKKTNAE
                     TGLKEVTDMFIAIFEGMEDNPYMQERAADIRDVAKRVLAHLLGVRLPNPATIDEESIV
                     IAHDLTPSDTAQLNKQFVKAFVTNIGGRTSHSAIMARTLEIAAVLGTNNITEIVKDGD
                     VLAVNGITGEVVINPSEEVIAEFKAAGEAYAKQKAEWALLKDAQTVTADGKHFELAAN
                     IGTPKDVEGVNDNGAEAVGLYRTEFLYMDSQDFPTEDEQYEAYKAVLEGMNGKPVVVR
                     TMDIGGDKELPYFDLPHEMNPFLGFRALRISISETGNQMFRTQLRALLRSSVHGKLRI
                     MFPMVALLTEFRAAKAILEEEKANLLAEGVAVADDIQVGIMIEIPAAAMLADQFAKEV
                     DFFSIGTNDLIQYTMAADRMNEQVSYLYQPYNPSILRLINNVIKAAHAEGKWAGMCGE
                     MAGDQQAVPLLVGMGLDEFSMSATSVLRTRSLMKKLDTAKMEEYAHRALTECATAEEV
                     LELQKEYVDFD"
     gene            complement(1745..2008)
                     /locus_tag="U1087_001147"
     CDS             complement(1745..2008)
                     /locus_tag="U1087_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019775469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocarrier protein HPr"
                     /protein_id="HEM4755628.1"
                     /translation="MASKDFHIVAETGIHARPATLLVQTASKFASDITLNYKDKSVNL
                     KSIMGVMSLGVGQGADVTISAEGADADDAIAAITETMEKEGLA"
     gene            complement(2150..3343)
                     /gene="icd"
                     /locus_tag="U1087_001148"
     CDS             complement(2150..3343)
                     /gene="icd"
                     /locus_tag="U1087_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HEM4755629.1"
                     /translation="MAEKILMREGRLIVPDCPVIPYIEGDGIGRDIWSVSQKVIDAAV
                     KKAYAGQRSIQWREVLAGEKAYESIGTSLPNETLEIIREHLVAIKGPLGTPIGKGHRS
                     LNVALRQELDLYACVRPIRYFKGVPSPLKEPEKTDITIFRENTEDIYAGIEWEAGSDE
                     VAKVISFLQEEMGVVNIRFPESSSIGIKPISEEGSKRLIRSAIEYALEHQLKIVTLVH
                     KGNIQKFTEGGFRKWGYELAKEEFATELAEGTLVVNDIIADNFLQQILLAPENFQVVA
                     LTNLNGDYVSDALAAQVGGIGISPGANINYQTGHAIFEATHGTAPDIAGKDLANPCSL
                     LLSACMMLEYIGWKEAAALIIQALEDAFINKNVTLDFAKILDVAHQSTSQFSEILIDS
                     IMKKK"
     gene            complement(3346..4464)
                     /locus_tag="U1087_001149"
     CDS             complement(3346..4464)
                     /locus_tag="U1087_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019790817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HEM4755630.1"
                     /translation="MTETNGLKDAIACDTRISAIENDRLSYAGYDIAELMENNASFEE
                     VIYLLWNLHLPTQIELNYFEKSLRKEYAISDAVEQCILIQSRRHLHPMSVLRSTVSLL
                     GVYNVHAEENSLEALYEQSIQIMAKVPTIIATFARLRRGLVPIEPRSDLGFAANFLYM
                     LNGEEPSDLQIKAFNKALVLHADHELNASTFAARVTASTLTDLYSCVTTAIGTLKGSL
                     HGGANERVFDMLLAIRESGDTERYLQKKLDSKEKIMGFGHRVYKTVDPRQEYLKEMAR
                     DLTFGTDDEAFYRLSEEVESFIKNKKGLIPNVDFYSATVYHVLGIDSDIFTLIFAMSR
                     MAGWIAHVQEQRKNNKLIRPRSSYLGGRNLVYIPIGKR"
     gene            complement(4461..7130)
                     /gene="acnA"
                     /locus_tag="U1087_001150"
     CDS             complement(4461..7130)
                     /gene="acnA"
                     /locus_tag="U1087_001150"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
                     /protein_id="HEM4755631.1"
                     /translation="MEKSHRKRLFHKGKEYSYYALDSISMEEKVDIHSLPYTIRILLE
                     SLLRKEDGEDVTKNHIMELLHYQAASPKGEIPFKPSRVILQDFTGVPVVVDLASMRDA
                     VVKAGGNPELINPEIPVDLVIDHSVQVDFFGTEDALEKNIALEFERNNERYEFLKWAE
                     NSFENYRAVPPATGIIHQVNIEFLSDVIINNDGLLYPDSMFGTDSHTTMINGIGVLGW
                     GVGGIEAEAAMLGEASYFPVPEVIGVRLAGQLPKVATATDLALKVTQLLRQENVVGKF
                     VEFFGPGLSSLTLADRATVSNMAPEYGATCGYFPIDGETLHYMRLTNRSEEHVELTEA
                     YAKANYLFYDAERFPSYSKVLELDLSTVVPSISGPKRPQDLIELTDAKAEFQASLIRE
                     VGVRGFGLEEAELDKTATVKYVEGDEQIQTGHVAIAAITSCTNTSNPYVLLAAGLLAK
                     NAVEKGLAVSKTVKTSLAPGSKVVTGYLKKSGLQTYLDALGFNLVGYGCTTCIGNSGD
                     LRPEVADAIKEEDLLVSAVLSGNRNFEGRINPLVKANFLASPPLVVAYAIAGNMNVDL
                     TRDPLGYDEKQQAVYLADIMPSREEVDDYIERYVTRDLYKEEYQQVFTDSQAWNAIET
                     KTEKNYNWNSSSTYIQNPPYFDNMQADLSIKPLENLSVLAKFGDTVTTDHISPAGNIA
                     RLSPAARYLEENGIVYKDFNSYGSRRGNHEVMMRGTFANIRIKNELADGKIGGWTRVG
                     DEILPIYDAAMRYKEAGVGSIVIAGKDYGMGSSRDWAAKGSSLLGVKAVLAESFERIH
                     RSNLVMMGVLPLQFLEGQSAESLGLTGHESYTIDLPEDVGVGQIVTVHAQTDDVKKEF
                     QALVRFDAEADIRYYRHGGILPMVVRKKLGGKV"
     gene            7517..7735
                     /gene="nrdH"
                     /locus_tag="U1087_001151"
     CDS             7517..7735
                     /gene="nrdH"
                     /locus_tag="U1087_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin-like protein NrdH"
                     /protein_id="HEM4755632.1"
                     /translation="MVTIYSKNDCVQCKMTKKFLDQHSVDYKEINLDEQPEFIDHVKG
                     LGFSAAPVIETENDVFSGFQPGKLKALV"
     gene            7768..9927
                     /gene="nrdE"
                     /locus_tag="U1087_001152"
     CDS             7768..9927
                     /gene="nrdE"
                     /locus_tag="U1087_001152"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000053857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1b ribonucleoside-diphosphate reductase
                     subunit alpha"
                     /protein_id="HEM4755633.1"
                     /translation="MSLKELGDVSYFRLNNEINRPVNGQIPLHKDKEAVKAFFKENVL
                     PNTKQFDSILDKIAYLLEENYLEKEFLDQYSPEFIIKIDQFLKDQNFRFKSFMAAYKF
                     YNQYALKTNDGAYYLESMEDRVLFNALYFAEGDEELALNLANEMIHLRYQPATPSFLN
                     AGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLREAGAPIKGY
                     EGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLSTKKENADEKVR
                     VKTLSLGITVPDKFYELARKNEDMYLFSPYSVELEYGVPYSYLDITEKYDELVANPRI
                     RKTKIKARDLETEISKLQQESGYPYVINIDTANRSNPVDGKIIMSNLCSEILQVQTPS
                     VINDSQEYLTMGTDVSCNLGSTNIVNLMKSPDFGLSVRTMTRALTYVTDHSHISAVPS
                     IEAGNEQAHSIGLGAMGLHSYLAQNLIDYGSKTAVEFTNIYFMLLNYWTLVESNNIAR
                     ERKATFHNFDKSKYADGTYFDKYVTGNYQPQSDRVKELFEGIFIPSGQDWADLREKVK
                     ADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYPAAGLATETI
                     PFYKSAYDMDMRKVIDVYAAATEHVDQGLSLTLFLRSELPKELYEWKTENKQTTRDLS
                     ILRNYAFNKGVKSIYYVRTFTDDGEEVGANQCESCVI"
     gene            10521..11480
                     /gene="nrdF"
                     /locus_tag="U1087_001153"
     CDS             10521..11480
                     /gene="nrdF"
                     /locus_tag="U1087_001153"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004253599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1b ribonucleoside-diphosphate reductase
                     subunit beta"
                     /protein_id="HEM4755634.1"
                     /translation="METYYKAINWNAIEDVIDKSTWEKLTEQFWLDTRIPLSNDLDDW
                     RKLTAEEKDLVGKVFGGLTLLDTLQSETGVQALRNDIRTPHEEAVYNNIQFMESVHAK
                     SYSSIFSTLNTKSEIEDIFEWTNSNEYLQRKAKIINEIYETGTPLEKKVASVFLETFL
                     FYSGFFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSGEEQDKLR
                     DWMYDLLYQLYENEEGYTRSLYDAVGWTEEVLTFLRYNANKALMNLGQDPLFPDSADD
                     VNPIIMNGISTGTSNHDFFSQVGNGYLLGEVEAMQDDDYLYGL"
     gene            complement(11515..12189)
                     /locus_tag="U1087_001154"
     CDS             complement(11515..12189)
                     /locus_tag="U1087_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM4755635.1"
                     /translation="MLKFIKHVALLFLYFVAYQIASGFLMVGPTLQSIQDIPAQLIDS
                     TIWICAIIGLVLSIALIILLWKYIYPRHSVDYRVTASWFHKIQWPILLYIAFFIFQFI
                     VPVPESENQKLVIEFVSAYPLIAFSSVVIFAPILEELIFRGFLATYFFPKMVDMKAVG
                     IYLVVTGSLFSLVHMPATLPQFMIYFTMGLNLGWLYLIKRDIRYPIALHMLNNGISYL
                     MIVFLV"
     gene            complement(12199..>12499)
                     /locus_tag="U1087_001155"
     CDS             complement(12199..>12499)
                     /locus_tag="U1087_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755636.1"
                     /translation="ILVGFLFFNSLSDRKKVKQLQARVKKLQKTTKGENQMSILLKEL
                     IGSKAKIRFDDEFSIAYEYTILAVDEEWVKISRELANGEIETKLVRVDNIVDLSF"
BASE COUNT         3754 a         2882 c         2269 g         3594 t
ORIGIN      
        1 caacgattaa tcgaaatcaa catactcttt ttgaagttca agaacttctt ctgccgttgc
       61 acattctgtc aaggcacggt gagcatattc ttccatctta gctgtatcaa gtttcttcat
      121 aaggctacgt gtacgaagta cagatgttgc actcatagag aactcatcca agcccatacc
      181 tacaagaagt ggaacagctt gttgatcacc agccatctca ccacacatac cagcccattt
      241 accttctgcg tgtgcagcct tgataacatt gttgatcaag cgaaggattg atgggttata
      301 tggttggtag aggtatgaca cttgttcgtt catacggtca gcagccattg tgtactggat
      361 aaggtcgttt gtaccgattg agaagaagtc aacttctttg gcaaattggt ctgcaagcat
      421 tgctgctgca gggatttcaa tcatgatacc aacttggata tcatccgcaa ctgctacacc
      481 ttctgccaac aagttggctt tttcttcttc aaggattgct tttgctgcac ggaattctgt
      541 caacaaggca accattggga acatgatacg aagtttacca tgtactgatg agcgaagaag
      601 ggcacgcaac tgagtacgga acatttggtt accagtctca gagatagaga tacgaagggc
      661 acggaaacca aggaatgggt tcatttcgtg tggaagatcg aagtaaggaa gttccttatc
      721 accaccgata tccattgtac gaaccacaac tggcttgcca ttcatacctt caagaacagc
      781 cttgtaagct tcgtattgct catcttcagt tgggaagtct tgtgagtcca tgtacaagaa
      841 ctcagtacgg taaagaccaa cagcttctgc accgttatca tttacacctt caacgtcttt
      901 tggtgtaccg atgtttgctg ccaattcaaa gtgtttgccg tcagctgtaa ctgtttgagc
      961 atctttcaaa agagcccatt cagctttttg tttggcatag gcttcaccag ctgctttaaa
     1021 ttctgcaatc acttcttcag aagggttgat aaccacttca cctgtgatac cgttaacagc
     1081 gagtacatcg ccatctttaa cgatttcagt aatgttattt gtccccaaaa cagcagcaat
     1141 ttcaagtgta cgagccatga tagctgagtg gcttgtacga ccaccgatgt ttgttacaaa
     1201 ggcttttaca aactgtttgt tcaattgtgc tgtatctgaa ggtgtcaagt catgtgcgat
     1261 aacgattgac tcttcatcaa ttgtcgcagg gtttggcaaa cgaacgccaa gcaagtgagc
     1321 taggacacgt tttgcaacgt cgcggatatc tgctgcacgc tcttgcatgt atgggttatc
     1381 ttccatacct tcaaaaatag cgatgaacat atccgttact tctttcaaac cagtctcagc
     1441 gtttgttttc ttagcacgaa tagtttcctt aatttgacca atcatttctg ggtcagcaag
     1501 aaccatcaag tgtgcatcaa atacggctgc ggcctcttca cctaggctag ctactgcgtt
     1561 ctcacgaata agagaaagct cgttttgaga tgctgcaaga gctgcatcca aacgagcttc
     1621 ttctgcattt gtatcttcaa ctgtaacagt ttcgaaggac aaatctggct gaacgagtag
     1681 atatgcctta gcaacggcaa caccatcaga tgctgcgatt cctttaagca tttctgtcat
     1741 attcttatgc caatccttct ttttccattg tttcagtgat agctgcgatt gcgtcgtcag
     1801 catcagcacc ttcagcagag attgttacgt cagcaccttg accaacacca agactcataa
     1861 cacccatgat agatttaagg ttaactgatt tatctttgta gttcaaagtg atgtctgaag
     1921 cgaatttgct agcagtttga acaagcaaag ttgctggacg agcgtggata cctgtttctg
     1981 ccacaatgtg gaagtctttt gaagccatat ttggattctc ctttattttt acaaaattgt
     2041 gagttatttg tgataaccct tacaaaagac attataccac tttttgaaat cattttcaag
     2101 atttttttac ctttctttca tgtttccgtc ataaaaagag aggttcattt tactttttct
     2161 tcattataga atctattaga atttctgaaa attgactagt agattgatga gcaacgtcca
     2221 aaattttagc aaaatcaagc gtaacatttt tatttataaa agcatcttcc aaggcctgta
     2281 taattaaagc agctgcttct ttccagccta tatattccaa catcatacaa gccgaaagca
     2341 agagggaaca tggattagcc aaatcctttc ctgcaatatc gggagcagtt ccatgtgtcg
     2401 cttcaaagat agcatgacct gtctgataat taatgttagc acccggtgag atgcctattc
     2461 ctccgacctg agccgcaaga gcatctgata cataatctcc attgagattt gtaagagcaa
     2521 ccacctggaa gttttccggc gccaataaaa tctgctgcag aaagttatcc gcaataatgt
     2581 catttactac caaagtcccc tctgcaagtt ctgtagcaaa ttcttctttc gccaattcat
     2641 aaccccactt gcggaaaccg ccttctgtaa acttttgaat atttccctta tgaactaagg
     2701 tcactatctt caattgatgt tctagggcat attctattgc agagcgaatg agacgtttac
     2761 tcccttcttc cgaaatcggt ttgataccaa tacttgaaga ttctggaaaa cggatattta
     2821 ccactcccat ttcttcttgt aaaaaggaaa tgactttggc aacttcatct gaaccagcct
     2881 cccattcaat acctgcataa atatcttctg tattttcacg aaaaatagta atatccgtct
     2941 tttcaggctc tttcagcgga cttggcactc ccttaaaata gcgaattgga cgcacacagg
     3001 catacaaatc taattcttga cgaagtgcaa cattaagaga acgatgacct ttcccaatcg
     3061 gcgtccccaa gggacctttg attgcaacta aatgctcacg gattatttcc agtgtctcat
     3121 tcggcaaaga agttcctatt gattcataag ccttttctcc tgccaaaacc tccctccact
     3181 gaatagaacg ttgacctgca taggcttttt tcactgcagc atcaataact ttttgactga
     3241 ctgaccaaat atccctgcca ataccatctc cttcaatata gggaataacg ggacaatctg
     3301 ggacaattaa ccgcccctct ctcatcagga ttttttctgc catatttacc tctttccaat
     3361 cgggatgtaa accaaattcc taccgcctaa gtaggaagag cgcggacgaa tcaatttatt
     3421 atttttccgt tgttcctgga catgtgcaat ccaccccgcc atacggctca ttgcaaaaat
     3481 caatgtaaaa atatcactat caatacctag cacatggtaa actgtcgccg aataaaaatc
     3541 tacgtttgga attaaacctt ttttgttttt aataaagctc tctacttcct ctgacaatct
     3601 ataaaacgct tcatcgtctg ttccgaatgt caaatcacgc gccatctcct tcaaatactc
     3661 ttgacgagga tcaaccgttt tatagactcg atggccaaat cccataattt tttccttcga
     3721 atccagcttc ttctgcaaat atctctcggt atcaccactc tcgcgaatag ccaacaacat
     3781 gtcaaacact cgttcatttg caccaccatg caatgagcct ttcagagtcc caattgccgt
     3841 ggtgacacaa gaatataaat ccgttaacgt tgatgccgtg acacgcgcag caaaagtaga
     3901 cgcattcaat tcatgatcag catgaagcac caaagctttg ttaaaggctt tgatttgtaa
     3961 atcactcggc tcctcaccat tcagcatata aagaaaattc gccgcaaacc ccagatcaga
     4021 ccgcggttca attggaacca atccacgtct caaacgagca aatgttgcaa taatcgtcgg
     4081 aaccttggcc ataatctgaa tagattgttc atacaaagct tctaacgaat tctcttcagc
     4141 gtgtacatta tatactccaa ggagagatac tgtcgaacgc aacacgctca taggatgcaa
     4201 atgtcgccgt gattgaatca gaatacattg ctctaccgca tctgaaatcg catattcttt
     4261 tcgcagactt ttctcaaaat aatttaattc aatctgagtt ggcaaatgca ggttccacag
     4321 aagatagatg acttcctcaa aagaagcgtt attctccatc aattcagcaa tgtcataccc
     4381 tgcataggac aagcggtcat tttcaattgc actgattcgc gtatcacagg caatcgcatc
     4441 ttttaaccca ttcgtttctg tcataccttt cctcctagtt tctttcttac taccataggt
     4501 aaaatacctc cgtggcgata ataacgaata tctgcctctg catcaaaccg caccagtgct
     4561 tgaaactcct ttttaacatc gtctgtttgc gcatggactg ttacaatttg accaacaccg
     4621 acatcttctg gcaagtcgat tgtatagctt tcatgtccag tcaagccaag actttctgcc
     4681 gactgacctt ctaaaaattg taaaggaaga acacccatca tcactaagtt tgaacggtga
     4741 atccgctcaa atgactcagc aagaacggcc ttcacaccaa gtaaacttga acctttggct
     4801 gcccagtcac ggcttgaccc catcccatag tctttaccag caataacaat actaccgaca
     4861 ccagcttcct tatatctcat ggctgcatca tagattggaa gaatctcatc gccaactctt
     4921 gtccaaccac caatttttcc atctgccagc tcattcttta tacgaatatt tgcaaaagtc
     4981 ccacgcatca tgacttcgtg atttccacga cgacttccat aagaattaaa atccttataa
     5041 acaatgccat tctcttcgag ataacgagcg gctggactca atcgtgcaat attccctgcc
     5101 ggggaaatat gatctgtcgt tacggtatcg ccaaatttag ccaaaacaga taaattttcc
     5161 agtggtttta tggataaatc tgcctgcata ttgtcaaaat agggaggatt ttgaatatag
     5221 gttgaagatg aattccaatt gtaattcttc tctgtctttg tttcaatcgc attccaagcc
     5281 tgactatctg taaatacctg ttggtattct tccttataaa ggtcacgagt cacataacgc
     5341 tcaatgtagt catctacctc ctcgcgactt ggcataatgt ccgcaaggta gacagcttgt
     5401 tgcttctcat cataccccag cggatccctt gttaaatcta cattcatatt tcccgcaata
     5461 gcataggcaa caacaagcgg tgggctcgct aagaaattag cttttaccaa tggattaatc
     5521 cgtccttcaa agttacgatt tccagacaat accgcagaaa ccaataaatc ttcttcctta
     5581 atcgcatccg ctacttcagg acgcagatca cctgagttac cgatacaagt tgtacaacca
     5641 taaccaacca aattgaaccc taaggcatct agataggtct gcaaacctga tttttttaaa
     5701 tagccagtca ctacttttga gcctggtgcc aatgacgtct tgaccgtctt agaaactgcc
     5761 aaaccttttt ctaccgcatt ttttgccagt aatcctgccg ccaaaaggac atacggattg
     5821 gaggtatttg tacacgaggt aatcgccgca atagcaacat gacctgtttg aatttgctca
     5881 tctccttcaa catacttaac cgtggctgtt ttatctaact ctgcttcctc caaaccaaat
     5941 ccacgcacac ctacttcacg tattaaacta gcctgaaact ctgcttttgc atctgttaat
     6001 tctatcaaat cctgtggtct tttaggacca gaaatagatg ggactactgt tgataaatcc
     6061 aattctaaaa ccttgctata agacggaaaa cgttcagcat catagaataa atagttagcc
     6121 ttagcatagg cttctgtcaa ctccacatgc tcctccgaac ggttggtcaa tctcatataa
     6181 tgtaaagttt ctccatcaat cgggaaatag ccacaagtcg caccgtattc tggagccata
     6241 ttggaaacag ttgctcgatc cgctaatgta agagaagata aacctggtcc aaaaaattcg
     6301 acaaacttcc caactacatt ttcctgacgt agaagttgag tgaccttaag cgccaaatcc
     6361 gttgcagtgg caaccttagg caattgccca gctaggcgaa cgccaatcac ttcaggaacg
     6421 ggaaaatagg atgcttcacc caacattgca gcttccgcct caataccacc tacaccccaa
     6481 ccaagtacac caataccgtt aatcatggtc gtatgactgt ctgtaccaaa catagaatct
     6541 ggataaagca agccatcgtt gttgataata acatcgctta gaaattcaat atttacctga
     6601 tggataattc ctgtcgctgg aggcacagcg cgataatttt caaaggaatt ctctgcccat
     6661 ttcagaaatt catagcgttc attatttctt tcgaactcta aggcaatatt tttctccaga
     6721 gcatcttcag tcccaaaaaa atcaacttga acagagtggt cgatgactaa atccactgga
     6781 atttccgggt taatcaattc agggtttcca cctgctttca ccactgcatc acgcatggag
     6841 gctaaatcta ccacaacagg aacacctgta aaatcttgca aaataacacg actaggttta
     6901 aaaggaattt cccctttagg agatgcagcc tgataatgaa gtaactccat tatgtgattt
     6961 tttgtaacat cctcaccatc ttcttttctt aaaagactct ctaataaaat acgaatagta
     7021 tagggaagtg aatgaatatc cactttttct tccattgaaa tcgaatccaa tgcataatat
     7081 gaatattctt tccctttatg aaacaagcgt tttctatgtg atttttccat attttataac
     7141 ctctttcgac attattaaat agtatagtac aaaagctaat atatattcaa tacatatatc
     7201 actatagatg ttatattttg taacatcgta tattttctta aaaatattgc gacatttgta
     7261 aaaaagctga tttatacttt accgagagat tgttagggtt atcaaaccaa atagaaacag
     7321 ctatgtaaac gctatttttc gacttggcat cattggacgt atgtacaata tatggtgtct
     7381 tgtgaaaata ttgtgcacta tattttgtga ttttaaataa acttccttct tgactttaac
     7441 cttaaaatct tgtatcctag attggtaaca aaattgggat tttctattaa tccctcatgg
     7501 acaaaggaga aattgaatgg taacgatcta ttcaaaaaat gattgtgtac agtgtaaaat
     7561 gaccaagaaa ttcttggatc aacatagtgt agattataaa gaaatcaatc tagatgaaca
     7621 gcctgaattt atcgatcacg taaaagggct cggtttctca gctgcacctg ttatcgaaac
     7681 tgaaaatgat gttttctcag gttttcaacc aggaaaacta aaagccttgg tttaactccc
     7741 tactgtttat agaaagagat tgcgactatg agtttgaaag aattaggcga tgtgtcctac
     7801 ttccgtttga ataacgaaat taaccgccct gttaatgggc aaatcccact ccacaaggac
     7861 aaagaggctg tcaaggcttt cttcaaggaa aatgtccttc caaataccaa gcaattcgat
     7921 agtattttag ataagattgc ttatttatta gaagaaaatt accttgaaaa agagtttttg
     7981 gaccagtata gcccagaatt tatcatcaaa atcgatcaat tcttgaaaga ccaaaatttc
     8041 cgcttcaagt ctttcatggc agcctacaag ttttacaacc agtatgccct caaaaccaac
     8101 gacggtgcct actacttgga aagcatggaa gaccgtgtcc tcttcaacgc cttgtatttt
     8161 gctgagggcg acgaagaatt ggcactaaac ctggccaacg aaatgattca tttgcgttac
     8221 cagccagcaa caccgtcttt cctcaacgca ggccgtgccc gtcgtggtga gttggtgtct
     8281 tgtttcctca ttcaagtcac tgacgatatg aactcgattg gacgttctat caactctgct
     8341 ctgcaattgt cccgtatcgg tggtggtgtt ggtatttccc ttagcaactt gcgtgaggca
     8401 ggtgctccaa tcaagggcta tgagggggca gcttctgggg ttgttcctgt tatgaaactc
     8461 tttgaggaca gcttctccta ctctaaccaa cttgggcaac gccaaggagc tggtgtagtt
     8521 tatcttgatg ttttccaccc agacattatt tccttccttt cgactaagaa agaaaatgcc
     8581 gatgagaaag ttcgcgtgaa gaccttatca ctcggtatca ccgttcctga taaattctac
     8641 gaattggcac gtaaaaacga agatatgtac ctcttcagcc catactcagt tgagttggaa
     8701 tacggtgtcc cttatagcta ccttgacatc acagaaaaat acgacgagtt ggtagcaaac
     8761 ccacgcattc gtaagacaaa aatcaaggca cgtgacttgg aaacagaaat atccaaactc
     8821 caacaagagt ctggatatcc atacgttatc aacatcgata ctgccaaccg tagcaatcct
     8881 gtcgatggta agattatcat gtccaacctc tgttcagaaa ttctacaagt ccaaacgcca
     8941 agcgttatca acgactctca ggaatacttg actatgggaa cagacgtgtc atgtaacctt
     9001 ggttcaacca acatcgtcaa cctcatgaag tcacctgact ttggactttc tgtccgtacc
     9061 atgacacgcg ccttgaccta tgtgacggac cactcgcaca tttctgcagt accgtctatc
     9121 gaagctggta acgagcaagc tcattctatc ggtcttggtg ctatgggact tcactcttat
     9181 ttggcccaga acctgatcga ctacggttca aaaacagccg tagaatttac caacatctac
     9241 ttcatgctcc ttaactactg gaccttggta gaatcaaata acattgcccg cgaacgtaag
     9301 gctactttcc ataattttga caaatcaaaa tacgcagacg gtacttattt cgacaagtat
     9361 gtgactggta attaccaacc acaatctgac cgtgttaaag aactctttga aggcattttc
     9421 attccaagtg gacaagattg ggctgacctc cgcgaaaaag taaaagcaga tggactctat
     9481 caccaaaacc gcctagccgt tgcaccgaat ggatctatca gctatatcaa cgatgtttct
     9541 gcttctattc acccgattac ccagcggatt gaagaacgcc aagagaagaa aatcggtaaa
     9601 atctactatc cagcagctgg cttagcaaca gaaaccattc cattctacaa gtctgcctat
     9661 gacatggata tgcgcaaggt catcgatgtc tatgctgccg caacagaaca cgtggaccaa
     9721 ggtttgtccc tcaccctctt cctccgcagc gagcttccaa aagaactcta cgaatggaaa
     9781 acagagaaca aacaaaccac ccgtgacctc tctatcctcc gtaactacgc cttcaataag
     9841 ggtgtcaagt ctatctatta tgtacgtacc tttaccgatg acggcgaaga agtcggcgca
     9901 aaccaatgtg aaagttgtgt aatttaagac actaacattc attgatgcta aagcatctaa
     9961 tgaatgaacg gtactgacta tatggtcagt acctaagtgg cttactacct cgaaaagtcg
    10021 ttaagttcga acgacttttc tcaggtcgta acttgcaagg gattagctgt tggcaagcca
    10081 actacctaat ctacgccaac cgctatgagc ggattggcta gctacctcac taacttcgaa
    10141 actgaagaaa tatcgtcttc agtttctacg tgtcgtaaga tgtgaggacg tttcaacagt
    10201 ctgggggact gttgaaagtt ggaaatgaga aaaatggaaa taccgcagag atgtcttgca
    10261 tctcaaaggg atttatcttt tttgccaagt ccttagcccg aactcgattt cgacgtagca
    10321 ggattagctg ttggcaagcc aactagctaa tctacgccaa ccgctatata cggattagct
    10381 agctacctta cgacactgtc gttcacgatg tgaagcaact aataagcgat cgattaaaat
    10441 cccttttagg ggattttttt acaggctact atctatttgt gatataatat ttgaagtata
    10501 agaaaaagaa agagaatatg atggaaacct actacaaagc cataaactgg aacgccattg
    10561 aggatgtgat tgacaagtca acttgggaaa aattgaccga gcaattctgg ctcgatacac
    10621 gtatcccatt atcaaacgac ttggatgact ggcgtaaact gactgctgaa gaaaaagacc
    10681 tggttggtaa ggtctttggt ggattgaccc tcttggatac ccttcaatct gaaacaggtg
    10741 tccaagccct ccgcaatgat attcgtacac ctcatgaaga agctgtttac aacaacatcc
    10801 aattcatgga gtcagtccat gccaagtctt actcttctat cttctcaacc ttgaatacca
    10861 agtctgagat tgaagacatc tttgaatgga ccaacagcaa cgaatatttg caacgcaagg
    10921 caaagattat caacgaaatc tacgaaacag gtacacctct tgagaagaaa gttgccagcg
    10981 tattcctaga aaccttcctc ttctactctg gtttcttcac gccgctctac taccttggca
    11041 acaacaaact ggccaacgtt gcagaaatca tcaaactgat tatccgtgac gagtctgttc
    11101 acggtaccta catcggttac aagttccagc ttggtttcaa tgaattgtcc ggggaagaac
    11161 aagataaact ccgcgactgg atgtacgacc tgctctacca actttatgaa aatgaagaag
    11221 gctacacgcg ctccctttat gacgcagtcg gctggaccga ggaagtattg accttcctcc
    11281 gttacaatgc caacaaggcc ctcatgaact tggggcaaga cccgctcttc cctgactcag
    11341 cagacgatgt caacccaatc atcatgaacg gtatttcaac tggtacatct aaccacgact
    11401 tcttctcaca agtcggtaac ggctatctac tcggtgaagt ggaagctatg caggacgatg
    11461 attatcttta cggtttataa tcaaaaaagc agttcaatcc gagctgctta ttttttatac
    11521 taaaaataca atcatcaaat aagaaatacc gttgttgagc atatgtagcg caatcggata
    11581 acgaatatca cgtttgatca gatagagcca tcctagattg agtcccatcg tgaaataaat
    11641 cataaattgg ggaagagttg ctggcatatg gaccagacta aataaagacc ccgttacaac
    11701 aagatagatt ccaacagcct tcatatctac cattttaggg aagaaatagg tcgctaaaaa
    11761 tccacgaaaa atcaattctt ctaaaattgg agcaaagatc actactgagc taaatgcaat
    11821 caagggataa gctgatacga attcgatcac aagcttttga ttttcacttt ctgggactgg
    11881 tacaataaat tggaagataa aaaatgcaat atagagcaat atcggccatt gaatcttatg
    11941 gaaccatgaa gctgtcacac gatagtcaac agaatgacgt ggatagatat acttccataa
    12001 cagaataatg agcgcaatgg agagaactag accaattatc gcacaaatcc aaattgtact
    12061 gtcaatcaac tgggcaggta tgtcttgtat gctttgtaaa gttggtccta ccatcagaaa
    12121 acctgaagca atttgatagg caacaaagta tagaaatagt aatgcgacgt gtttgataaa
    12181 ttttaacata atccctccct aaaagctcaa gtcaacaata ttatcgactc gtaccaactt
    12241 ggtttcaatc tccccattcg ctaattcacg agaaatttta acccattcct catcaactgc
    12301 caaaatggtg tattcataag caatagaaaa ttcatcatca aagcggattt tagctttact
    12361 tccgatcaat tctttcaata aaatggacat ctgattttct ccttttgtag ttttctgcaa
    12421 cttttttacc ctagcttgca actgcttcac ttttttccta tctgatagag aattgaaaaa
    12481 tagaaatcct actagaatc
//
LOCUS       DASFRC010000061        12323 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.061, whole genome shotgun sequence.
ACCESSION   DASFRC010000061 DASFRC010000000
VERSION     DASFRC010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 12323)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12323)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12323
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.061"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            134..1441
                     /gene="xylA"
                     /locus_tag="U1087_001156"
     CDS             134..1441
                     /gene="xylA"
                     /locus_tag="U1087_001156"
                     /EC_number="5.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010768166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose isomerase"
                     /protein_id="HEM4755637.1"
                     /translation="MSYFPHLSPIKYEGTATTNPFAFRHYNPDEVIEGKTMKEHLRFA
                     LAYWHTMTQDGSDPFGYPTNERTWFGETVMETAHNRVDAFFEILEKLGVDYFCFHDID
                     IAPAGDSLEEFFSNLDEITDHIKAKMEETGKKLLWNTANMFSHPRFNNGAASSNNAEV
                     FAYAAAQVKKGLDISKKLGGENYVFWGGREGYESLINTDMKFEQENIARLFKMAIAYG
                     EKIGHKPQFLIEPKPKEPSKHQYDFDAATTMAFILKHGLEGDFKLNLEANHATLAGHT
                     FEHELNVARDFNALGSIDANQGDMLLGWDTDEFPTNIYDTTFTMLEILANGGLAPGGI
                     NFDAKVRRSSFEMEDLLLAHIAGMDTYARGLKAAAKIRSDRFLENLKEKRYASYKEGI
                     GASILADKEDLESLTAYALEHDNPKLESSHLELVKSQLNDYLV"
     gene            1491..2966
                     /gene="xylB"
                     /locus_tag="U1087_001157"
     CDS             1491..2966
                     /gene="xylB"
                     /locus_tag="U1087_001157"
                     /EC_number="2.7.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylulokinase"
                     /protein_id="HEM4755638.1"
                     /translation="MSYVLGIDLGTSSLKGLLVTKQGELVASASAEYDLMHLQPGFSE
                     QNPKDWLLACDKVFEALTDKVADFTSQLEGISFSGQMHSLVLLDGRGHVLRPAILWND
                     TRTSAQCRQIEEKLGNRLLAITRNRALEGFTLPKILWVQEKEPEIWAQVRQLMLPKDY
                     LGYYLTGNHHTDFTDAAGTLLLDIENGEWSAEIADTFGIPISYLPKVVASSVQIGTVR
                     KELQERYGLENAVQVFAGGADNACAAVGAGILSSQVGMASIGTSGVFLSYEGNKTLDY
                     QGKLHFFNHALSGSYYSMGVTLAAGHSLNWFRDTFAKEQSFSDLLATISSISPGSNGL
                     LFTPYIVGERTPHVDSHIRGSFIGIDTSHRLAHFTRSVLEGITFSLKDAQSLMTEVAG
                     KTFTRIVSVGGGAKNKDWLQIQADVFNAEIVTLKAEQGPGLGAAMLAALGLGWFENME
                     SCADHFVAYTDAIQPIPENVAVYETIYQHYKAIYPNVKNIK"
     gene            2990..5047
                     /locus_tag="U1087_001158"
     CDS             2990..5047
                     /locus_tag="U1087_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 31 protein"
                     /protein_id="HEM4755639.1"
                     /translation="MNNCEITYIEKRLEDELLRIEAWGNNSLRIRAFPTGIVEEHVNA
                     LTEPVPNPHCKVIIHENGNQEIRNGKISAIIDHRNKISFFNEKGALILQEFIRLRAVK
                     HDDGSEDISTISVTKDFNSTLKLKSREYQANNHGSDFAVKARFESNPNEKIFGMGQYQ
                     HEFLDLKNTVLELAQRNSQFSTPFYLSSLGYGFLWNNPGIGSVTFAKNLTEWSMRATT
                     YIDYWITVGDTPKEILNQYCLVTGFAPLMPKRLLGLWQSKLRYRTPQEVLDVLEGYRR
                     RNIQLSTIAIDYFYWPKQGEYRFDEKFWPNVKELISEIKNHYNVEPIISIWPTVQSDA
                     NNFQTYQQNGYLIGINKGIRFSMNIQGQTTFIDTTNREACQYVWQQIEANYKKNGINY
                     YWIDVAEPGYAVYDFDNYRYQKGPVLQCGNLYPIGYLKMIFDGNSQQDSEVILVRGAW
                     AGAQKYGALPWSGDIDSSFESLRNQVNTGLNVGMAGLPWWTTDIGGFHGGNADDPEFR
                     ELMIRWFQYSTFSPILRMHGDRLPHSKSLSNEGGGKMPTGAPNEIWSFGSEVENIMMR
                     FIRIRDGLKEYLYHLMKEAHDFGYPVMRSLFFEYPNDSMAWDVDNTYMLGDSILVAPI
                     VDYQLRERIVYLPDDREWVHLFSEKEYQGGSSYLIQAPLDEIPVFIVKNKWREISTYL
                     GSI"
     gene            5076..7151
                     /locus_tag="U1087_001159"
     CDS             5076..7151
                     /locus_tag="U1087_001159"
                     /inference="COORDINATES: protein motif:HMM:NF013239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase family 31"
                     /protein_id="HEM4755640.1"
                     /translation="MVGMEDIHFIDGGWEYSDENLQLRVLFYETNLIYVSCSPINVAL
                     TREKSLERLSVPPYIEHFFQNGILHSKNGQIQVEFDGWHLTFYDGEKRLLEEYLRKLS
                     PVRRMIGEEYGNVNIQEQRSSALNILPREFISLSEENYHAYARFEADPSEKIIGLGAY
                     QDSLWNKNGGDYELAQRNSQNALPFYISDKGYGFIWHSSAIGRVTLGNNRYTWESQET
                     KEIHYTIFCSDSPKGVLQTLTSFTGRAPMMDQRFLGLWQSKLRYQTTQEVNEVFTGYK
                     FRNLPLSVIVIDYFHWTEEGDYCFDQTYWRGIERLATNCREAGVELMISVWPTVSKES
                     RHFKWFNSENLLIQNNTRTKKSVALFNGSYLLDLSRSWMRIILKYLLLKNYRRKGIQL
                     FWADQAEPELDSYHHNRYSISGINFASCANRYSLWYLEAIPKYIINDKKIIFPTLIRN
                     VWFGSQEQGALAWSGDIEGSFESLREQIRIGLSMGICGQSWWTTDIGGFHEYKNDANY
                     FRELLIRWFQFATFTPILRMHGDRQPHTPSIGKSGGGIRTSGASNEIWSFGEKVEQIL
                     TKFLHIREILLPYLTVIYTECHLTGLPLMRPLFLEFPSEPGSWEISDFYMFGSDLLVC
                     PVTDENCKFLRVYLPRGYEWVHLFTKEIFIGGMWYDIGVSLENIPVFRKSTSSFLMGI
                     EDKISKIGG"
     gene            7153..7632
                     /locus_tag="U1087_001160"
     CDS             7153..7632
                     /locus_tag="U1087_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM4755641.1"
                     /translation="MGIVLVRVDQRLVHGIVVTQVTKSVNAKRIMVIDDQISQDENQK
                     AIMRMSKPAGTGMSIISVETAVQNILAGKYEDHNVLVVVRDISVIVKLVERGVFLPKI
                     QLGIIFEREDRERFTKSVSLNPQEQLELQALSLEGIPIIFQFTPTDKEEAFDKYVKK"
     gene            7648..8433
                     /locus_tag="U1087_001161"
     CDS             7648..8433
                     /locus_tag="U1087_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002299151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM4755642.1"
                     /translation="MAEIIQNVLIILLPAYALIDNRGATIINHWPITVGLFAGIIMGD
                     VPAAMTIAGTFQLMSLGVAALGGSSVPDYALATVVSIFLHARTNVELGTAVVIGLPVG
                     ILALNLDVLTHTLNSFVANKSKSFMLEGKFTSMKLLNWISILMVALQAIIPMVILVAF
                     GPKLISGIVDSVPAWITTGLNVAGGMLPVIGVVMLMRYMPLKKFFWAVLIGFVFSGYV
                     GLPILAISMIGLAMASIYYMNEKKLSSHLTSEAKFDEGGLFDE"
     gene            8426..9244
                     /locus_tag="U1087_001162"
     CDS             8426..9244
                     /locus_tag="U1087_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HEM4755643.1"
                     /translation="MNKKIDTKLTRKDHLRTALRWTFIGSNTVNFGTLQGAGYAWAIA
                     NILRKLYPNDDDYKKAMEVEFEYFNTTPYMAPAVLGADVAIQEHGGIESLDAVRSVKT
                     SLMGPLAGIGDSILWVLFPTIMGSIGGYMALEGNPLGAIIWISLNLLLVLFRIKLYDL
                     GYKSGVRLVTDLASQLNLFTESASIIGLTVVGSMVATAVKLYTPIEFHFKDVSIGLQS
                     EIFDRIVPGLLPILLTLLVYWLMEKKKLGFLHLIIILLVLSLIGAYLGILGIQP"
     gene            9257..9673
                     /locus_tag="U1087_001163"
     CDS             9257..9673
                     /locus_tag="U1087_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIA"
                     /protein_id="HEM4755644.1"
                     /translation="MQKIVIATHERLAEGYYRTLNYLIPEMPEIIILSAYIETNSIQE
                     QVDDIYQNLKDEDKLIVLTDIAAGSVNQSFCRYISRPNTLIVSGINLPLVMSIILEAM
                     HTELDLPKIRTLVSEAQEQLLVVNDVLRNFEIETDE"
     gene            complement(9929..11008)
                     /locus_tag="U1087_001164"
     CDS             complement(9929..11008)
                     /locus_tag="U1087_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000040814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HEM4755645.1"
                     /translation="MSKLHHVKSYLEANKMDLAIFSDPVSIYYLTGYHSDPHERHMML
                     FVMPDHDSLLFLPALDVERAVATVDFPVAGYMDSENPWQIIKSKLPQKSFSAICAEFD
                     NLNLTRYHGLQSIFSQPFSDITPLINTMKLIKSRDEIEKMLVAGEFADKAMQVGFNNI
                     SLNVTETDIIAQIEFEMKKQGISKMSFETMVLTGDNAANPHGIPSTNQIENNALLLFD
                     LGVEALGYTSDMTRTVAVGKPDQFKKDIYNLTLEAHMAAVNMIKPGVTAGEIDYAARS
                     VIEKAGYGEYFNHRLGHGLGMSVHEFPSIMEGNDLVIEEGMCFSVEPGIYIPGKVGVR
                     IEDCGYVTKNGFEVFTKTPKELLYF"
     gene            11216..12220
                     /gene="ccpA"
                     /locus_tag="U1087_001165"
     CDS             11216..12220
                     /gene="ccpA"
                     /locus_tag="U1087_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catabolite control protein A"
                     /protein_id="HEM4755646.1"
                     /translation="MLNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLE
                     VIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYFATLAKGIDDIADMYKYNIVLAN
                     SDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLP
                     SVNIDYAAASVDAVNLLAKNNKKIAFVSGPLVDDINGKVRFAGYKQGLKDNGIEFNEG
                     LVFESKYKYEEGYALAERILNAGATAAYVAEDEIAAGLLNGVSDMGVKVPEDFEIITS
                     DDSLVTKFTRPNLTSINQPLYDIGAIAMRMLTKIMHKEELENREVVLNHGIKVRKSTK
                     "
BASE COUNT         3881 a         2046 c         2637 g         3759 t
ORIGIN      
        1 aaaggggaat aagccaaaaa taataaaaaa aatttaaaag cgcttgacaa agaagtgttg
       61 atatgttatt ctctctgtgt aagttagttt aacaaaaaaa ctaacaaaag tcaatacata
      121 taaggagaat attatgtcat atttcccaca tttatcacca attaaatatg aaggtacagc
      181 aacaacaaat ccttttgctt ttcgccatta caatcctgac gaggtgattg aaggtaaaac
      241 aatgaaagag catttgcggt ttgctcttgc ttattggcat accatgacac aagatggttc
      301 agatccattt ggttatccaa caaacgagcg cacatggttt ggggaaactg ttatggagac
      361 agctcacaat cgagtggatg cgttttttga aattcttgaa aaacttggag tggattattt
      421 ctgtttccat gatattgata ttgctccggc gggggattct ttagaagaat tcttttctaa
      481 ccttgatgaa attacagacc atattaaagc aaaaatggaa gagacgggga aaaaacttct
      541 ttggaataca gcaaatatgt tttctcaccc tcgtttcaac aatggtgcag cctcctcaaa
      601 taatgcagaa gtctttgcct atgcagctgc tcaagttaag aaggggttgg acatttctaa
      661 aaaacttggt ggcgaaaact atgtcttctg gggcggacgt gaagggtacg aatctttgat
      721 caatactgac atgaagtttg agcaagaaaa cattgcccga ctcttcaaaa tggcgattgc
      781 ctacggtgaa aagattggtc ataagccaca gttcttgatt gagccaaaac caaaagaacc
      841 gtcaaaacat cagtatgatt ttgatgcggc gactaccatg gccttcattc tcaaacacgg
      901 tcttgaagga gatttcaagt tgaacctaga agctaaccac gcgacccttg cagggcacac
      961 ctttgaacat gagctaaatg tggcgcgtga ctttaatgct cttgggtcga ttgacgccaa
     1021 ccaaggcgat atgcttctgg gctgggatac ggatgagttc ccgacaaaca tctacgacac
     1081 cacctttacc atgcttgaaa ttttggcaaa tggaggtcta gcaccaggtg gcatcaactt
     1141 tgatgctaag gtccgtcgtt catcctttga aatggaagac cttcttttag ctcatattgc
     1201 tggtatggat acctatgcgc gaggtttgaa agcggcagcc aaaattcgct ctgatcgttt
     1261 cttagagaac ttgaaagaaa aacgctatgc gagctataaa gaaggcattg gtgccagcat
     1321 tcttgcagat aaggaagact tagaaagtct cactgcatat gccttggaac acgacaatcc
     1381 aaaattagaa tccagccatt tagagttagt caaatcgcaa ttaaatgatt atttagtata
     1441 aggggggtgt gggggataga tgccttccca cttgtagaaa gtaggttcgt atgtcttatg
     1501 ttttaggtat tgatcttgga accagttctt taaaggggct tttggttacc aaacaaggag
     1561 agcttgtggc gtctgcctct gctgagtatg atttgatgca tttgcaacca ggatttagtg
     1621 agcagaatcc taaagattgg cttctagctt gtgataaggt ctttgaggcg ttgacagata
     1681 aggtagcaga ttttacctct caattagaag gtattagctt ttctggccaa atgcatagtc
     1741 tagtcctttt agatggacgt ggccatgttt tacgaccggc tatcttgtgg aatgatacac
     1801 gaacaagtgc ccagtgtcgt caaattgaag aaaaacttgg taatcgctta ttggctatta
     1861 ctcgaaatag ggcgcttgaa ggtttcaccc taccaaaaat tctttgggta caggaaaagg
     1921 aacccgaaat ttgggctcag gtgcgtcagt tgatgctacc aaaagattat ttgggctact
     1981 atttgacagg taaccatcat actgatttta ctgatgccgc aggtactctc ttgcttgata
     2041 tcgaaaatgg agaatggtct gctgaaattg ccgatacgtt tggtattcct atcagttatt
     2101 taccaaaagt tgtcgcttct tccgttcaaa ttggcaccgt tagaaaggaa cttcaagaac
     2161 gttatggttt agaaaatgcc gtccaggtct ttgcgggtgg tgctgacaat gcttgtgcag
     2221 cggtgggagc aggaatttta tctagtcaag tcggtatggc aagtattggg acatcaggtg
     2281 ttttcctctc ttatgaagga aataagacac ttgattatca aggaaaactc cactttttta
     2341 accatgcttt gagtggtagt tactattcca tgggtgtgac gttggctgct ggtcatagtc
     2401 tcaactggtt ccgtgatacc tttgccaaag agcagagctt ttcggatttg ttagcaacta
     2461 tcagttccat ctctccaggg tctaacggcc ttctctttac accatatatt gttggagaga
     2521 ggacgcccca tgttgatagt catattcgtg gctcatttat cggtattgat accagccata
     2581 gattagcaca ttttacaagg agtgtacttg aaggcattac attttctttg aaagatgctc
     2641 aaagtcttat gacagaagtg gcaggaaaaa cttttacccg cattgtttct gtcggtggtg
     2701 gtgctaaaaa taaagattgg ctccagatac aggcagacgt ctttaatgca gaaattgtaa
     2761 ccttaaaagc tgaacaagga ccaggcttag gtgcggcgat gctagcagct cttggtttag
     2821 gatggtttga gaatatggaa tcctgcgcag accactttgt agcatacact gacgccattc
     2881 agccaattcc agaaaatgtc gctgtctacg aaaccatcta tcagcactat aaagccattt
     2941 acccaaatgt caaaaatatt aagtgagggt ttttatggaa aaatcgtata tgaataactg
     3001 tgagataaca tatatcgaaa aaagattgga agatgaactg ttacgaattg aagcttgggg
     3061 aaataattca ttacgcatac gggcatttcc tacaggtata gttgaagaac atgttaatgc
     3121 cttgacagaa ccagttccga atccgcactg taaagtaatt atccatgaaa atggcaatca
     3181 agaaataaga aacgggaaaa ttagtgctat tattgaccat cgtaataaaa tcagtttttt
     3241 taatgaaaaa ggagcattaa tattacaaga atttattcgc ttacgtgcag ttaaacatga
     3301 tgatggtagt gaagatatca gtactattag tgtcacaaag gatttcaatt ctactttaaa
     3361 gttaaaatcg agagaatatc aggccaataa tcatggctcg gattttgcgg taaaagcaag
     3421 atttgagtcg aaccccaatg aaaaaatttt tggtatggga cagtatcagc acgaatttct
     3481 cgatttaaaa aacacggttc ttgaattagc acagcgtaat tctcaatttt caactccatt
     3541 ttatctatct agtctaggct atggtttctt atggaataat ccgggtatag gtagtgttac
     3601 atttgccaaa aatttgacag aatggtctat gcgggctact acttatattg attattggat
     3661 tacggtaggc gatactccta aagaaatatt aaatcagtat tgtttggtta caggttttgc
     3721 ccctttgatg ccgaaacgct tacttggtct ttggcaaagt aagttgagat acagaactcc
     3781 ccaagaagtg ttggatgttt tagaaggtta tcgtcggaga aacattcaat tatccacaat
     3841 tgcaattgat tacttttatt ggccaaagca aggagagtat cgatttgatg aaaaattttg
     3901 gccgaatgtc aaagaactta ttagcgaaat aaaaaatcat tataatgtgg aacctattat
     3961 ttcaatctgg ccaactgtgc aatcggatgc caataatttt cagacctatc agcagaatgg
     4021 atatcttatt ggtattaata agggaattcg cttttcgatg aatattcaag ggcagactac
     4081 ttttattgat acaactaacc gagaggcttg tcaatatgtt tggcaacaga tagaagcaaa
     4141 ttataagaaa aatggcatta actattactg gattgatgta gctgaaccag gttatgcagt
     4201 ctatgatttt gataattatc gataccaaaa aggtccagtt cttcaatgtg ggaatctcta
     4261 tcctattggt tacttgaaaa tgatttttga tggcaatagt caacaagatt cagaagttat
     4321 tctagttagg ggggcttggg ctggagcaca aaaatatggt gctttacctt ggtcaggtga
     4381 tattgactct agttttgagt ctttaagaaa tcaggtcaat acaggattaa atgttggaat
     4441 ggctggtttg ccatggtgga caacagatat cggagggttt catggaggaa atgctgacga
     4501 tccagaattc agagagttga tgattagatg gtttcaatat tctacctttt caccgatttt
     4561 gagaatgcat ggagatcgct taccacattc aaaatctctt tctaatgaag gtggagggaa
     4621 aatgcctaca ggagcaccta atgaaatttg gtcgtttggt agtgaggtgg aaaacataat
     4681 gatgcgattc atccgtatac gcgatgggtt gaaggaatat ctttatcatc taatgaaaga
     4741 agctcatgat tttggttacc cggtgatgag atccttattt tttgaatatc caaatgattc
     4801 aatggcatgg gatgtggata acacttatat gttgggagac tctattttag tagcccctat
     4861 tgtagactat caactcagag aaaggatagt ttatttacct gatgatagag agtgggtgca
     4921 tctgtttagt gaaaaggagt atcaaggcgg tagttcttac ctaattcaag ctcctcttga
     4981 tgagattcca gtatttattg taaaaaataa gtggagagaa atttctacat atttaggctc
     5041 aatataagac ttttataact agtggggatg tataaatggt cggtatggaa gatatacatt
     5101 ttattgacgg aggttgggag tattcagatg aaaatcttca actcagggtt cttttctatg
     5161 aaactaatct tatttatgtc tcatgctccc caatcaatgt tgcgcttaca cgggaaaaat
     5221 ctttagaacg attaagtgtc cccccctaca tagagcattt ttttcagaat ggaatactac
     5281 attcaaaaaa tgggcaaata caggttgaat ttgatggctg gcatttaacc ttttatgatg
     5341 gcgaaaaaag attattagag gagtatttac gtaaactctc tccagtaagg cgaatgattg
     5401 gggaagaata tggtaacgtt aatattcagg agcaacgtag ctctgctctg aatatattac
     5461 ctagggaatt tatttcctta tcagaagaga actaccatgc ttatgcaaga tttgaagcag
     5521 atcctagtga aaaaataata ggcttaggtg cttatcaaga ttctctatgg aataaaaatg
     5581 gaggagacta tgaattagct caaagaaatt ctcaaaatgc actaccattc tatatttcag
     5641 ataaaggcta tggatttatt tggcattctt cagcaattgg tagagtgacc ttaggaaata
     5701 acaggtatac ttgggaatct caagaaacga aagaaattca ctatacaata ttttgttcag
     5761 acagccccaa gggtgtacta cagaccctga ccagtttcac tggaagagct cccatgatgg
     5821 atcaacgttt tctaggattg tggcagagta aattacgtta tcaaactact caagaagtca
     5881 atgaggtatt tactggatat aagtttagaa acttaccact atcagtcatt gttatcgact
     5941 attttcactg gacagaagaa ggtgactact gttttgatca gacttactgg agaggcattg
     6001 agaggcttgc tacaaattgt agagaggctg gagtcgaatt aatgatatct gtttggccaa
     6061 cagtaagtaa agagtcacgg cacttcaagt ggtttaatag tgagaacctg ttaatacaaa
     6121 ataatactcg gacaaagaaa tcagtcgcct tatttaacgg gtcatatctg ttagatttat
     6181 ccagatcgtg gatgagaata atcctgaaat acctattatt aaaaaattat aggaggaaag
     6241 gtatacaatt attttgggca gatcaagcgg aacccgagtt agatagctat caccataatc
     6301 gatatagtat atcaggcatt aactttgcaa gttgtgctaa tcgttattct ttatggtatt
     6361 tggaggccat tcctaaatat ataattaatg ataaaaagat aatatttcca acattgatta
     6421 ggaatgtttg gtttggaagt caagaacaag gagccttggc atggtccggt gatatagaag
     6481 gatcatttga atcattaaga gaacaaataa gaattggttt atctatggga atctgtggac
     6541 aaagttggtg gacaacagat atcggaggat tccatgagta taaaaatgat gcgaactatt
     6601 ttagagaact attaatcaga tggtttcaat ttgcgacatt tactccaatt ttacgaatgc
     6661 atggagatag gcaaccccac accccatcaa tcgggaaatc tggtggaggg attagaacga
     6721 gtggggcatc aaatgaaatc tggtcctttg gagaaaaagt tgaacaaatt ttaacaaaat
     6781 tccttcatat tagggaaata ttactaccat atttaactgt tatctataca gaatgtcatt
     6841 tgacaggtct ccctttgatg cgaccactat ttttagagtt tcctagtgag ccaggaagtt
     6901 gggagatatc tgatttttat atgtttggtt cggatttact agtttgccca gttactgacg
     6961 aaaactgcaa atttctgaga gtctatttac ctcgaggata cgaatgggtt cacttattca
     7021 ctaaagaaat atttatagga ggaatgtggt atgacatagg tgtatcgctt gaaaatatac
     7081 cagtttttag aaaaagtact agttcttttc taatgggcat tgaagataaa atttcaaaaa
     7141 taggaggata gaatgggaat tgttttagtt agagttgatc agcgattagt tcatggtatt
     7201 gtagtcactc aggttactaa aagtgttaat gctaagcgta taatggtcat agacgatcag
     7261 attagtcagg acgagaatca aaaagctata atgcgtatga gtaaaccagc tggaacaggg
     7321 atgtctatta ttagtgtaga aacagcagtt caaaacattt tagcagggaa atacgaagat
     7381 cataacgttt tagttgttgt acgagacata tcagtaatcg ttaagctagt tgagagaggt
     7441 gttttccttc caaaaattca gttaggaatt atctttgaga gagaagatag agaaaggttt
     7501 acaaagagtg tttccttgaa cccgcaagaa cagttagagt tacaggcact ttctttagaa
     7561 gggataccta taatattcca gttcactcct actgacaaag aagaagcttt tgataaatat
     7621 gtaaaaaaat aattatggag aataactatg gcagaaataa tacaaaatgt tttaataatt
     7681 cttctaccgg catacgcctt aattgacaat agaggagcaa ctattatcaa tcactggccg
     7741 ataacggttg gtttgtttgc aggcatcata atgggagatg ttcctgctgc tatgactatt
     7801 gctggaactt ttcaattaat gagtttaggg gttgcagctt tgggaggatc atctgttccg
     7861 gactatgcac tagcaacagt ggtatctatt tttcttcatg ctagaaccaa tgttgaacta
     7921 gggacagcag tagtaattgg actaccagta ggtattttag cgctcaacct tgatgttctt
     7981 acccacacat tgaattcttt tgtagcaaat aaatctaaga gtttcatgct tgaaggaaag
     8041 tttacatcaa tgaaattgtt aaactggatt agtattttga tggttgctct gcaagctatt
     8101 attcctatgg tcattttggt agcttttggt ccgaaattga ttagtggaat tgttgactca
     8161 gtaccagctt ggattactac tggtttaaat gttgcaggag gaatgcttcc agttattggg
     8221 gtagtaatgt tgatgagata tatgccacta aaaaaattct tttgggcggt actaattggt
     8281 tttgttttta gcggatatgt cggacttccg attttagcga tatctatgat tggtcttgcg
     8341 atggcatcta tttattacat gaatgagaag aagctatcat cacatttaac gtcggaggct
     8401 aaatttgacg aagggggact tttcgatgaa taagaaaata gataccaaat taactagaaa
     8461 agatcattta cgaactgcac taagatggac atttattgga agtaatacag taaactttgg
     8521 tacattgcag ggtgctggtt atgcttgggc aatcgctaat attttgagga aactgtatcc
     8581 caatgatgat gattacaaaa aagcaatgga ggtcgaattt gaatatttca atactactcc
     8641 atatatggct cctgcagttt taggtgctga tgttgcaatt caagaacatg gaggtattga
     8701 gtccctagat gcagttagat cggtaaaaac ttctttaatg ggaccgttgg cggggattgg
     8761 agactctata ttgtgggtcc tatttccaac gattatgggg tcaatcggtg gctacatggc
     8821 attagaaggg aaccctcttg gagcaattat ttggatttca ttaaaccttc ttttagtctt
     8881 attccgaatt aaattatatg acttaggtta taaatcaggt gtacgtctgg ttacagattt
     8941 agcaagccag ttgaatctat tcacggaatc tgcctcaatt ataggtctaa cggtagtggg
     9001 aagtatggtt gctactgctg tcaaacttta cacgccaata gaatttcatt ttaaagatgt
     9061 ttcaataggt ttacaatcag aaatttttga tcgtattgtt cctgggttat taccaatttt
     9121 actaactctt ttggtttact ggttgatgga gaaaaagaaa ttagggttct tacatctaat
     9181 aattattctt cttgttcttt ctttaattgg cgcatatttg ggaattttag gtattcaacc
     9241 atagcaaagg agacatatgc aaaaaattgt tattgcgact cacgaaagat tggcagaagg
     9301 ttattataga acattgaatt atcttatccc agagatgcct gaaataataa ttctctccgc
     9361 ttatattgag actaattcta tacaagaaca agtagatgat atctatcaaa atttgaagga
     9421 tgaggataaa cttatcgtac ttacagatat tgctgctgga tcagttaatc aaagcttttg
     9481 tcgctatatt tcaaggccaa atacactaat agtttcagga ataaatttac ccttggtaat
     9541 gagtattatt ttggaggcga tgcatactga actagactta cctaaaatac gaacattagt
     9601 cagtgaagct caagagcagt tacttgttgt taatgatgtc ctacgaaatt ttgagataga
     9661 aacagatgag taacattaat gatatcaatt ttacttctca tctatttcag ttctttgttg
     9721 cttagaccta caaatgttaa aaacctccta aaattgttag gaggtttttt ggtatcgact
     9781 tttttagtct ctacaactag cgcaatttta aaaagttctt taaaggtttt ggaaggagaa
     9841 tactgtattg aatcaaaaat ttcggtcatt tcaggaactt agtaaagtaa gataacgaag
     9901 ttatgaaaaa aagaatatat gactcacttt aaaaatacaa aagttctttt ggtgtttttg
     9961 taaagacttc aaagccattt ttggtaacgt aaccacaatc ctcgatacga acaccaactt
    10021 ttccagggat gtaaatacct ggctcgacag agaaacacat accttcttcg atgactaaat
    10081 cattgccttc cataatcgat gggaattcat ggacactcat tcccaaaccg tgaccgagtc
    10141 ggtggttgaa gtactcgcca taacctgctt tttcaatcac agagcgagcg gcatagtcaa
    10201 tctcgccagc agtcacacca ggcttaatca tattgaccgc ggccatgtga gcctccagag
    10261 tcaaattgta aatatctttt ttaaactgat cgggtttacc gacagcgaca gtccgtgtca
    10321 tatcagacgt atagcccaaa gcttccacgc ctaggtcgaa caatagcaga gcgttattct
    10381 cgatttggtt tgttgaggga ataccgtgtg gatttgcggc attgtcgcct gttaagacca
    10441 tggtctcaaa gctcattttt gagatgcctt gtttcttcat ttcaaattca atctgagcaa
    10501 taatatcagt ttcagttacg ttgagggaga tattgttaaa accaacctgc atagccttat
    10561 ctgcaaactc tccagcaacc agcatttttt caatttcatc acgagacttg atcaatttca
    10621 tagtattaat cagaggtgta atgtctgaaa atggttggct aaagatagac tgaagaccat
    10681 ggtagcgggt taaattcaaa ttatcaaatt ctgcacagat tgctgagaaa gatttctgtg
    10741 gcaatttgct cttgataatc tgccatggat tttctgagtc catatagcct gctacaggaa
    10801 aatcaacagt cgcaaccgca cgctctacat ccaaggcagg gagaaagagt agtgagtcgt
    10861 ggtcaggcat aacaaagagc atcatgtggc gttcatgagg atcactatga tagccagtca
    10921 gataatagat gctaactgga tcagagaaga tggccaagtc cattttgttg gcttctaagt
    10981 aggatttaac atgatgtaat tttgacatag tggagccctt tctagcatgt agtggtaaaa
    11041 aaagtgaaaa tttcgtttat tatatagact attgttccaa aaaatgaaaa aaattgcaag
    11101 tattatcaaa aaatggcgtt tttctcttga aagtggtttc aaaaagtgat acactattgt
    11161 tgagtgaaag cgtaattttc atagaaatag aatattgaaa gggagtacaa aagttatgtt
    11221 aaacactgat gatacggtta cgatttacga tgtcgcccgt gaagctggtg tatccatggc
    11281 gacagtatcg cgcgtggtaa atgggaataa aaacgtaaag gaaaatactc gtaaaaaagt
    11341 attagaagtc atcgaccgtt tggattatcg tccaaatgct gttgcacgtg gattggccag
    11401 caagaagact accactgtgg gggttgtgat tccaaatatt gctaatgctt attttgcaac
    11461 cttggccaaa ggtatcgatg atattgccga tatgtacaaa tacaatatcg tcctagcaaa
    11521 cagtgatgaa aatgatgaga aagaaatcaa tgtggtaaat accctattct caaaacaggt
    11581 ggacggaatc attttcatgg gctatcattt gacagacaag attcgtgcgg agttttcacg
    11641 ctcacgtaca ccgattgttt tagctggtac cgtggacttg gagcaccaat tacctagcgt
    11701 caatattgac tatgctgccg ctagtgttga tgcagtcaat ctattagcta agaacaacaa
    11761 gaaaattgcc tttgtatcag ggccgcttgt agatgacatc aacggtaaag ttcgttttgc
    11821 aggctacaaa caaggcttga aggacaacgg aatcgagttt aacgaaggat tggtttttga
    11881 atccaagtat aaatacgagg aaggctacgc tctagcagaa cgtattttga atgccggagc
    11941 aactgcagct tatgttgcag aagatgagat tgctgctggt ctattgaacg gtgtcagtga
    12001 tatgggcgtc aaggttccag aagactttga aatcattaca agtgatgatt ccctagtgac
    12061 caagtttacc cgtccaaacc tgacctctat caatcagcca ctatacgata ttggtgcaat
    12121 tgctatgcgc atgcttacca aaatcatgca caaggaagag ttggaaaacc gtgaggtagt
    12181 tcttaaccac ggaatcaaag tacggaaatc aactaagtaa taaatatggg agtagccgga
    12241 taagatatct tattactccg ccctcactct atcaaacatt ataatcattt agtttatctt
    12301 ttattacttc gacgagcgag gaa
//
LOCUS       DASFRC010000062        12258 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.062, whole genome shotgun sequence.
ACCESSION   DASFRC010000062 DASFRC010000000
VERSION     DASFRC010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 12258)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12258)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12258
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.062"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(211..1254)
                     /gene="pheS"
                     /locus_tag="U1087_001166"
     CDS             complement(211..1254)
                     /gene="pheS"
                     /locus_tag="U1087_001166"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HEM4755647.1"
                     /translation="MSNIEQQLAELSQTTLEKLKEIQHQGEKELQDLRVAVLGKKGSL
                     TDLLKGLKDLSNDMKPIVGKQVNEVRDVLTAAFEETAQKVAAAKIQQQLASETIDVTL
                     PGRQVKVGKRHVLTQTSEEIEDIFLGMGFQIVDGFEVEKDYYNFERMNLPKDHPARDM
                     QDTFYITEEILMRTHTSPVQARTMDQHDFSKGALKMISPGRVFRRDTDDATHSHQFHQ
                     IEGLVVGENVSMGDLKGTLEMIIKKMFGEERQIRLRPSYFPFTEPSVEVDVSCFKCGG
                     DGCNVCKKTGWIEILGAGMVHPQVLEMSGIDSTKYSGFAFGLGQERIAMLRYGINDIR
                     GFYQGDVRFSEQF"
     gene            complement(1711..3435)
                     /locus_tag="U1087_001167"
     CDS             complement(1711..3435)
                     /locus_tag="U1087_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001137776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 protein"
                     /protein_id="HEM4755648.1"
                     /translation="MPRLVDLRKKPYCLNEEQIAWVENTLAHLTDEEKIGQLFVNLFF
                     FGGDAFSGNNLSNQELMNRYHIGGARYMNGSPEQVQGLINELQSYSKVPLLVAANCDS
                     GGDGAVKGGTYISSGAQSEASRDPRIPYLAGLVSAREETALGVNVNFDPCVDIVQNWR
                     NTIVNTRAYGTNADDVIAYTSAYLEGLTAERDVIQCIKHFPGDGTEERDQHLVLGVNE
                     LSPEEWDNSFGRVYRHHIEAGVEMIMAGHIALPYYQQRLNPTLKDEDILPATLAPELI
                     QDLLKEKLEFNGLVITDASHMLGMTAAMRREDYVPAAIAAGCDMFLFFNNLEEDFEFM
                     LNGYRKGVITEERLHDALRRILGLKAKLNLHIKQAEGTLLKSADELAIIGCEEHLAWQ
                     REAADKAITLLKDTQKNLPISPETHRRIRLYYLEGEKEGIMAASTEVVDNLKAALEAR
                     GYEVTVNDGTTRIKGKTLQYREEVDLALTVANVIGYGAQNNYRIQWKTAMSNEVPWYV
                     HEVPTIFVSLNYTTHLHDVTMVKTAINAYHHNKNTIESLLDKLEGKDAFYGVPNENVW
                     ANKWQAKL"
     gene            complement(3446..5236)
                     /locus_tag="U1087_001168"
     CDS             complement(3446..5236)
                     /locus_tag="U1087_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-hexosaminidase"
                     /protein_id="HEM4755649.1"
                     /translation="MTHLVDLRKKPYSLDEEAISWIEETIAQMTLDEKIGHLFVNMGS
                     QRTEEYLTGVLNDYKIAAVRYNPGPAADIWEQNYILQTKSKIPLLIAANTESGGNGAV
                     TDGTKIGDEIKIAATTDPRYAYEMGKVAGLEAAAVGCNASFAPIMDLSRNWRNPIIAN
                     RTWGANVDQVIELSKEYMRGIMEHGIVPFAKHFPGDGIDERDHHLSFASNPMTKSEWM
                     ETFGRIYGEMADAGLPGIMAGHIHLPNVEKEMHPERELDDMLPASLNKTLLDELLRGE
                     LGYNGAIVTDASHMIGMTASMSRRELLPTAIEAGCDLFLFFNDPEEDLQWMKEGLENG
                     LLSEERLHDALRRTLGLKAKLGLHLFEGRRQEIMLPKEEALVLIGRDEAKQLAKEVAD
                     KAITLVKAKQEGIFPVNPERYKRILLVEVDGYKGGFGAMINAGKKRAADTLKELLEAR
                     GHQVSIWENTEARIAKLPEEERPAAIANVYASKRPIAEITDNYDLIINLVDVNSGGTT
                     QRIIWPAAKGTPDQPFYVHEIPTIVVSVQHPFALADMPQVATYINAYDGLPVTLEALV
                     AKLAGESDFTGVSPVDAYCGLLDTRIWRGK"
     gene            complement(5285..6085)
                     /locus_tag="U1087_001169"
     CDS             complement(5285..6085)
                     /locus_tag="U1087_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM4755650.1"
                     /translation="MMKTEYVFCVDSDGCAMDTMTYKHKLFFGPLAADVFGVKDKEPF
                     LAEWNRVNLYSRERGINRFVGLVKGLEFAGVTGIDNLKNWVATTDSLSNASLERLIEE
                     QPSKDLELALKWSTQVNQAIKHYSGPVLAFIGVHKGLEKLSQLGKVYVVSSANKEAVE
                     EEWTDQGLLDFVTELYCQDRGKKEDVIKLLIEEGDCPDKIMMIGDSPGDLKAAELNNV
                     HFYPILVGREMQSWADLTETIADEFAHQAFTDEKETELIQAFWNNLDD"
     gene            complement(6085..6924)
                     /locus_tag="U1087_001170"
     CDS             complement(6085..6924)
                     /locus_tag="U1087_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000047575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM4755651.1"
                     /translation="MTRVIEFKDKVVVITGAGGVLCGYLAKEFAKAGAKVALLDLNEA
                     AAQVFVDEIAAAGGVAKAYKSNVLSKENLEEVRLQVLADFGPVDILINGAGGNNPKAT
                     TDNEFHEIGLPADTKTFFDLDEAGINFVFNLNYLGTLLPTQVFAQDMIGRSGANIINI
                     SSMNAFTPLTKIPAYSGAKAAISNFTQWLAVHFSKVGIRCNAIAPGFLVTNQNRGLLF
                     DESGQPTARANKILTNTPMGRFGEAEELVGGVFFLADENLASFVNGVVLPIDGGFSAY
                     SGV"
     gene            complement(6926..8026)
                     /locus_tag="U1087_001171"
     CDS             complement(6926..8026)
                     /locus_tag="U1087_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannonate dehydratase"
                     /protein_id="HEM4755652.1"
                     /translation="MKMSFRWYGKKDPVTLEEIKAIPGMQGIVTAVYDVPVGQAWPLE
                     NILELKKMVEEAGLEITVIESIPVHEDIKQGKPNRDALIENYKTSIRNVGAAGIPVVC
                     YNFMPVFDWTRSDLHHPLPDGSTSLAFLKSDLAGVDPVADDLNLPGWDSSYSKEEMKA
                     IIENYRQNISEEDLWANLEYFIKAILPTAEEAGVKMAIHPDDPPYGIFGLPRIITGQE
                     AVERFLNLYDSEHNGITMCVGSYASDPKNDVLAMMEYALKRNRINFMHTRNVTAGAWG
                     FQETAHLSQAGDIDMNAVVKLLVDYDWTGALRPDHGRRIWGDQTKTPGYGLYDRALGA
                     TYFNGLYEANMRAAGKTPDFGITVKTVGNKEG"
     gene            complement(8040..9440)
                     /gene="uxaC"
                     /locus_tag="U1087_001172"
     CDS             complement(8040..9440)
                     /gene="uxaC"
                     /locus_tag="U1087_001172"
                     /EC_number="5.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucuronate isomerase"
                     /protein_id="HEM4755653.1"
                     /translation="MSFNDKNFMLKNEPAKQLYGKIAELPIYDFHCHLDPKEIFEDKV
                     YEDIVDLWLGGDHYKWRLMRANGISEAEITGSASKLDKFKAWARTLERAFGNPLYHWS
                     HLELRQVFGVEELLTEENAERLYHQLNAYLQEHQVSPRKLIADARVTFIGTTDHPLDS
                     LEWHKRLAEDSTIDTVVAPTFRPDEAFIEHRNFNPFMKHLEEVTGVAVRDFASFVEAL
                     GQRVSYFAQHGCRASDISFTAISYEEASLEELDDILLARLAGKESGQSSINKWQTAIF
                     RELCRLYKKHGFVTQVHFGALRNNHTGLFEKLGADVGVDSIGDQTCLTVNLNRLLDNL
                     VKENALPKMIWYNLNPSYNIALANTLANFQSNEEGLRSQLQFGAGWWFNDTKLGMIDQ
                     MNAYAEQGMLANFVGMLTDSRSFLSYQRHDYFRRILATYVGQWIVDEEVPEDYNRLGQ
                     LVEAISYYNAKEFFEQ"
     gene            complement(9442..10062)
                     /gene="eda"
                     /locus_tag="U1087_001173"
     CDS             complement(9442..10062)
                     /gene="eda"
                     /locus_tag="U1087_001173"
                     /EC_number="4.1.2.14"
                     /EC_number="4.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HEM4755654.1"
                     /translation="MLKQLKENYFFAVIRGKDEEDAKEIARHAILGGIRNIEITFSTP
                     NAATVIKELQEEFSDDSSVVIGAGTVMNVSLAQEAIDAGASFLVSPHFDKEIQDLAQE
                     AEVFYFPGCATATEIVTASQAGCPIIKLFPGGVLGPGFIKDIHGPVPQVDLMPSGGVS
                     VENVADWKKAGACAVGVGSALASRVQAEGYESVTTIARSFVAALEG"
     gene            complement(10184..10900)
                     /locus_tag="U1087_001174"
     CDS             complement(10184..10900)
                     /locus_tag="U1087_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001118301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FadR family transcriptional regulator"
                     /protein_id="HEM4755655.1"
                     /translation="MAKPLVEKASERLLELILERGYEVGDKLPNEYELAQDLEVGRST
                     VREAVRSLATRNILEVRQGSGTYISSKKGVSEDPLGFSLVRDRVKLTTDLFEVRYLLE
                     PRIAERVAQFASDEDIARLEEIVLAIEEAVAAGDTKHLELDVKFHCMLAEMSGNLAMT
                     SLMPVINQSIHLINENYSNRQMKSDSLQAHRNILMAIKQRHPVAAYDSMLAHIISVRQ
                     VVLSEWFDKDMTLHGLNDHK"
     gene            complement(10946..>12258)
                     /gene="uidA"
                     /locus_tag="U1087_001175"
     CDS             complement(10946..>12258)
                     /gene="uidA"
                     /locus_tag="U1087_001175"
                     /EC_number="3.2.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="beta-glucuronidase"
                     /protein_id="HEM4755656.1"
                     /translation="YAGIQRTVHLYKRPKNRIEDIVIRTELNQDLTQAVVNVDVKTVG
                     QYDSIRMSILDKEGQEVGLLENGQMVIEHPRLWEVLDAYLYTAKVELFDGENLLDTYS
                     EQFGIRSVAVENGQFFINGKPFYFKGFGKHEDTFINGRGFNEAANLMDLNLLKDIGAN
                     SFRTSHYPYSEEMMRLADRLGIVVLDEVPAVGLFQLFNAALNLTGDSEEAKNTWEVMQ
                     TKEAHELVIDELIARDKNHPSVVMWVVANEPAGHEKGARAYFEPLIQRMRDRDPSKRP
                     VTLVNIMTATPDKDEVMDLVDVVCLNRYYGWYVAHGDLKAAEKGLRQELETWQKLYPD
                     KPILITEYGADTLPGLHSMWDIPYTEEFQVDYYDMNHRVFDSIPNLVGEQVWNFADFE
                     TTVGIIRIQGNHKGLFSRNRQPKQIVREIKKRWTAIPNYHYKRK"
BASE COUNT         3427 a         2966 c         2303 g         3562 t
ORIGIN      
        1 aaacgatatt ttttgcttga aatcctagca aggtagctag gaaagtcgca gagcagcgat
       61 tcccacacct taaatagttc gagattacga cgttctaagg ttgaaaacga tacttttttc
      121 aaccttagaa ctagtgagac gattagacag ttcgccatag cgactgttgt ctcataaata
      181 ggtgcttcag caccatttat gagtatcgga ttaaaactgc tccgagaatc gtacatcacc
      241 ttgatagaat ccacgaatat cgttgatacc gtaacggagc atggcaatgc gttcctgacc
      301 aagaccgaag gcaaagccag agtacttggt tgagtcaatg ccactcattt ccaatacttg
      361 cgggtggacc atgccggcac cgaggatttc aatccagcct gttttcttac atacgttaca
      421 gccgtcacca ccgcacttga agcaggaaac atccacctca acagaaggct cagtgaatgg
      481 gaagtatgat ggacgcaggc gaatctgacg ctcttcacca aacatcttct tgataatcat
      541 ttcaagcgta cctttgaggt cacccatgga tacattttca ccgacaacca agccttcaat
      601 ctggtggaac tggtggctgt gggtcgcatc atccgtatca cgacggaaaa cacgtccagg
      661 cgaaatcatc ttcaaggcac ctttagaaaa atcatgttgg tccatggtac gtgcctgaac
      721 aggcgacgta tgggtccgca taaggatttc ttcggtgatg tagaaggtat cctgcatatc
      781 acgcgccggg tggtcttttg gcaaattcat gcgctcaaag ttgtagtagt ctttttccac
      841 ttcaaatccg tcaacgattt ggaagcccat gcccaagaaa atatcttcga tttcttcaga
      901 agtttgagtc aagacatggc gttttccgac cttgacttga cgacctggca gggtcacatc
      961 aatggtttct gatgccaatt gttgttggat ttttgctgct gcaacctttt gagctgtctc
     1021 ttcaaaagca gccgtcagca catcacgcac ttcattgacc tgcttaccaa cgattggttt
     1081 catatcgtta gacaggtctt tcaaaccttt caataagtca gtcaaggacc cttttttacc
     1141 caaaaccgca acacgcaggt cttgtagttc tttttctcct tggtgctgga tttcttttag
     1201 cttttcaagt gtcgtttggc ttaattcagc caactgttgt tcaatgtttg acataattcc
     1261 tccaataaaa aaacgcatga caccactcgt atcggagcgt tgtcacgcgg taccatccgt
     1321 tttcatctgc taggcagacc ttagttctat gaacctgtat tcacaagtga agtgcttgca
     1381 cataagagat ggttttccgc taatcaaggc tgttttttga gggaatactg actgtatttt
     1441 gaaaaaaact aacgatgagt agctgaaaaa ctagccttag atggaagtgc tgaactgtga
     1501 atacaggttc taagtccttg tgtgagtgaa ttcgaccaac tttcactgat tgagcttgca
     1561 gtcacggctc aactccctgg gcagtttcca taggtgtact agtctcacag actcctattc
     1621 aattaagaat attctatcaa aaataagaaa gtttggcaag aattcttcct agaaaactcc
     1681 ctctatccta ggatagaaag gagtttagtt ttatagtttt gcctgccatt tattggccca
     1741 aacattctca tttggcacac catagaatgc atcttttcct tctaatttat caaggaggga
     1801 ttcgatagta tttttattgt gatggtaggc attgatagca gttttgacca tggtaacatc
     1861 gtgaagatgg gtcgtatagt ttagtgaaac gaaaatggtt ggaacttcat gtacatacca
     1921 aggaacttca ttggacatgg ccgttttcca ctggatgcgg taattattct gcgctccata
     1981 tccaatgaca ttggcaacag tcaaggctaa atcaacttct tctcggtatt gcagcgtttt
     2041 tcctttgata cgagtcgtac catcattgac ggtcacttca taaccacgcg cctctagggc
     2101 agctttaagg ttatcaacca cttctgtact tgccgccata atcccttctt tttcaccttc
     2161 taggtaatac aatcggattc tgcgatgggt ttctggactg attggaagat ttttctgtgt
     2221 atctttcaac agcgtaattg ctttatctgc tgcttcacgt tgccaagcca agtgttcttc
     2281 acagccgata atagccaatt catcagctga ttttagtaag gttccttccg cttgcttgat
     2341 atgcagattg agtttggctt tcagacctaa aatgcgacgg agagcatcat gaagtctttc
     2401 ctcagtaatc actcccttgc ggtagccatt gagcataaat tcaaaatctt cttctaagtt
     2461 attgaagaat aagaacatat cgcaacccgc agcaatagct gcaggtacgt agtcttcacg
     2521 acgcatggct gctgtcatcc ccaacatgtg gctggcatct gttataacca agccattgaa
     2581 ttccagtttt tctttcaata aatcttgaat caattcagga gccagtgttg cgggcaaaat
     2641 gtcttcatcc ttcaaagttg gattgagtcg ttgttggtaa tatggcaagg ctatatgacc
     2701 cgccataatc atctcaacac cagcttcaat atgatgacga tagacacgac caaaactatt
     2761 gtcccattct tctggagaga gctcattgac accgaggacc aggtgctgat cacgctcttc
     2821 tgtaccatct cctgggaaat gcttgataca ttgaataaca tctctttcag cagtcaatcc
     2881 ttctagatag gcactggtat aagcaataac atcatccgca tttgtgccgt aggctctggt
     2941 attgacaatc gtattgcgcc agttctgaac aatatccacg caaggatcaa agttgacatt
     3001 aacacccaat gcagtctcct ctctcgcaga tacgagacct gctaggtagg gaatacgagg
     3061 atcccgactg gcttccgatt gagcacctga ggaaatatag gttccgcctt tcacagcccc
     3121 atctccacct gagtcacagt tcgctgcaac caagagaggt acttttgaat agctttgcaa
     3181 ctcgttaatc agtccttgta cctgttctgg actgccattc atataacggg ctccacctat
     3241 gtgatatcgg ttcatcaatt cctgattact cagattattt ccactaaagg catcccctcc
     3301 gaagaagaat agattgacaa acaattgacc gattttttct tcatcagtca gatgagccaa
     3361 ggtattttct acccaagcaa tctgctcttc attcaaacaa tagggtttct tccgcaaatc
     3421 aaccaatcta ggcattgttt cctccttatt ttccgcgcca aatacgtgta tctagcaaac
     3481 cacaataggc atcaacaggc gatactcctg taaagtctga ctctcctgct agtttagcaa
     3541 ccaaggcttc taatgtaaca ggcaagccat cgtaggcatt gatataggtt gcaacctgtg
     3601 gcatatctgc aagtgcaaat gggtgctgaa cagagacaac aatggttgga atttcgtgaa
     3661 catagaaagg ctggtctggc gttcccttgg cagctggcca aataattcgc tgagttgttc
     3721 ctcctgagtt gacatcaact aaattgataa tcaaatcata gttatctgtg atttcggcaa
     3781 ttggacgctt ggaagcatag acatttgcaa tcgctgctgg tctttcttct tctggcaatt
     3841 tggcaatccg tgcctccgta ttttcccaaa tagatacttg gtgacctcga gcttctaata
     3901 gttctttcag cgtatcggct gctctcttct tgccagcatt gatcatagcc ccaaaaccac
     3961 ccttataacc atccacttct accaataaaa tccgtttgta gcgttctgga ttgacgggaa
     4021 aaattccttc ttgtttggct tttaccaagg taatcgcctt gtcagctact tcttttgcaa
     4081 gctgtttcgc ctcatctcta ccaatcaaaa ccagtgcttc ttcttttggc aacatgattt
     4141 cctgacgacg accttcaaac aagtgaagac cgagtttagc tttcaagcct aaggtacgac
     4201 gaagggcatc atggaggcgt tcctcagaaa gcagaccatt ttccaatcct tctttcatcc
     4261 attgcaaatc ttcttctgga tcgttgaaga aaaggaacag atcacatcct gcctcaatag
     4321 ctgtaggcaa tagctcacga cgggacatag aggctgtcat accgatcatg tgactggcat
     4381 ccgtgacaat ggcaccattg taacctaact ctccacgaag caattcatcc aagagggttt
     4441 tattcagcga agctggtaac atatcatcca attcacgttc tggatgcatt tctttctcaa
     4501 catttggcaa atgaatgtgc cccgccataa tacctggaag acctgcgtca gccatctcac
     4561 cgtaaatccg tccaaatgtt tccatccatt cagatttggt catgggattc gaagcaaaag
     4621 agagatgatg gtcacgttca tcaataccat cgcctgggaa atgcttagca aacggcacaa
     4681 tgccatgctc cataatacct cgcatgtatt ctttggataa ttcaatgact tggtctacat
     4741 tagctcccca tgttcggttt gcaatgattg gattgcgcca attacggctg aggtccataa
     4801 tcggtgcaaa ggaggcattg cagcctaccg cagctgcttc aagtcctgca actttcccca
     4861 tttcataagc atagcgggga tcggttgtcg cagcaatctt gatttcatcc ccaattttcg
     4921 ttccgtccgt aacagcgcca ttcccaccag attcggtatt ggctgcaatc aaaagaggaa
     4981 ttttagactt ggtctgcaaa atatagtttt gctcccaaat atctgcggca ggtccaggat
     5041 tgtaacgaac agcagcaatc ttataatcat ttaatactcc agtcagatat tcttctgtcc
     5101 gctggctccc catgttgaca aagaggtgac cgattttttc atccaaggtc atctgagcaa
     5161 tggtttcttc aatccaagaa atagcctctt catcaaggct gtaaggtttc ttccgtaaat
     5221 ctactaaatg tgtcatgttt gcctccaaaa aagctagagg gcatagcgcc tctagccctt
     5281 ctctctagtc gtctaaatta ttccaaaatg cctgtatcaa ttctgtttct ttctcatctg
     5341 tgaatgcttg atgagcaaat tcatctgcaa tcgtttctgt caaatctgcc caagattgca
     5401 tctctcgtcc tactaaaata ggatagaagt ggacattatt gagttccgcc gccttcaaat
     5461 caccaggcga gtcaccaatc atcataatct tatcaggaca atccccttcc tctattaaca
     5521 gtttgatgac atcttctttc ttgccacggt cttgacagta caattctgta acaaagtcca
     5581 gcaaaccttg gtctgtccac tcttcttcta ctgcttcctt attagcagaa gaaaccacgt
     5641 agacttttcc taactggctc agtttttcca agcccttgtg aacgccgatg aaggctaaaa
     5701 caggaccgct ataatgctta atggcttgat tgacttgagt ggaccatttt aaggctaatt
     5761 ccaagtcttt tgatggctgc tcctctatca atctttccag agaagcattt gacaaagaat
     5821 ctgtggtcgc gacccaattt ttcaagttgt ctataccagt cacacctgca aattctaggc
     5881 ctttaaccaa gccaacaaac cggttaatgc cacgttctcg tgagtagaga ttaactcgat
     5941 tccattcagc taaaaacggt tctttatctt tgacaccaaa aacatctgca gctaaggggc
     6001 cgaagaaaag cttatgtttg taggtcatgg tatccatggc acagccatca gagtccacac
     6061 aaaatacgta ttccgttttc atcattaaac tcctgaatag gctgagaagc caccgtcaat
     6121 cggtaaaaca acaccgttga caaaacttgc caaattctca tctgccaaga agaagacccc
     6181 tccgactagc tcttccgctt caccaaaccg tcccattggt gtattggtca aaatcttgtt
     6241 ggcacgtgcg gtcggttgac ccgactcgtc aaacagcaag ccacggtttt ggttggtaac
     6301 caagaatcca ggtgcaatcg cattacaacg gataccaact tttgaaaaat ggactgctaa
     6361 ccattgggta aaattactaa tagcagcctt ggcacctgaa taggctggaa tttttgtcaa
     6421 aggagtaaag gcattcatgc tggaaatatt gataatattt gctcccgagc gaccgatcat
     6481 atcctgtgca aagacctgtg ttggcaataa ggttcccaaa tagttcaaat tgaatacaaa
     6541 gttgataccg gcctcatcca agtcgaagaa agttttggta tcagctggta gtccaatctc
     6601 atggaattca ttatccgttg tcgctttggg attattgcct cctgcaccat tgattaaaat
     6661 atctacagga ccaaaatctg ctaggacttg cagccgaact tcttccaaat tttccttaga
     6721 aagaacgtta gatttgtaag cttttgcaac gcctcctgct gctgcaatct catcaacgaa
     6781 gacctgagcc gcagcttcat tcaagtccaa aagcgcaacc tttgcacctg ccttagcgaa
     6841 ttcttttgcc aaatagccac aaagaacgcc acctgctcct gtaataacaa caaccttgtc
     6901 cttaaattca ataacacgtg tcatactagc cctccttatt tccaactgtt ttgactgtaa
     6961 ttccaaaatc tggtgtctta cccgctgctc gcatattggc ttcatagaga ccgttaaagt
     7021 aggttgcccc aagggctcgg tcatacagac cataaccagg tgtcttggtc tgatctcccc
     7081 aaatgcggcg accgtggtct ggacgcaggg caccagtcca gtcataatct accaataatt
     7141 taacaacagc attcatatca atgtcaccag cctgtgacaa atgtgcagtt tcttggaagc
     7201 cccaagcacc tgctgtcaca ttgcgcgtat gcataaaatt gatacgattg cgtttgagag
     7261 catattccat catggcaaga acatcatttt tcggatcaga agcataggat cctacacaca
     7321 tggtaattcc attgtgctct gaatcataga gattcaaaaa tcgttcaacg gcttcttgac
     7381 cagtaataat acgtggcaat ccgaaaattc catacggagg gtcatcaggg tgaatggcca
     7441 ttttgacgcc agcctcctca gctgttggca gaatcgcttt gataaaatac tccaaattcg
     7501 cccataaatc ttcttcagaa atattctgac gataattttc aataatcgcc ttcatttctt
     7561 ccttggaata ggacgaatcc caacctggta agttcaaatc atccgccaca ggatcaacac
     7621 ctgctaaatc agatttaagg aaagctaaag aagttgaacc atctggaagt gggtggtgca
     7681 agtctgaacg tgtccagtca aacacaggca tgaaattgta gcatacaact ggaatacctg
     7741 cagccccaac attacggatg gacgttttat agttttcgat taaggcatca cgatttggct
     7801 tcccttgttt gatgtcttca tgaacaggaa tggattcaat aaccgtaatt tcaagtcctg
     7861 cctcttcgac catttttttc agctctagaa tgttttcaag gggccaagct tgaccaactg
     7921 gcacatcata gacagctgtc acaattccct gcataccagg aattgcctta atctcttcaa
     7981 gtgtcacagg atcctttttc ccataccatc gaaatgacat tttcatgatt tactctcctt
     8041 tattgttcaa aaaattcttt ggcattgtaa taggatatgg cttctacaag ctggcctaaa
     8101 cgattgtaat cttcaggcac ttcttcatca acaatccatt ggccgacata agtcgctaaa
     8161 atccgtctga aataatcatg ccgttgataa gataaaaagc tacgcgaatc tgtcaacata
     8221 ccaacaaaat tagcaagcat gccctgttct gcataggcat tcatctggtc aatcatgccc
     8281 aacttggtat cattgaacca ccaaccagca ccaaattgta gctggctacg aagcccttcc
     8341 tcattggact ggaaattcgc caaagtattg gctagagcaa tgttgtaact tggattgaga
     8401 ttgtaccaaa tcatttttgg aagggcattt tccttaacca agttatctaa caaacgattc
     8461 aaattcacag tcagacatgt ctggtctcca atcgaatcca cacctacatc tgctccaagt
     8521 ttttcaaaca gtccggtatg gttgttccgt aaggcaccaa agtgaacttg tgtcacaaag
     8581 ccatgtttct tgtacaatcg gcacaattct ctaaagatag cagtctgcca tttattgata
     8641 ctggattggc cagactcttt acctgcaagt cttgctagta aaatatcatc aagctcttca
     8701 aggcttgctt cttcgtatga aatagccgta aaactgatgt cacttgctcg gcaaccatgt
     8761 tgagcaaaat aggaaacgcg ctgaccaagt gcctctacaa aacttgcaaa gtctcttact
     8821 gctacccctg ttacctcctc caagtgtttc ataaatggat tgaaatttcg atgttctata
     8881 aaggcttcat ctgggcggaa agtcggtgcc actacagtat ctatagttga gtcctcagcc
     8941 agacgcttat gccattccaa gctatcaaga ggatggtcag ttgtcccaat aaaggtcacc
     9001 ctagcatccg caatcagctt acgtggacta acttgatgtt cttgcaaata agcattgagc
     9061 tgatgataga gtcgctcggc attttcttcg gtcaacaatt cctcaacacc gaaaacctgt
     9121 cgcaattcca agtgactcca atgatagaga ggatttccga aagcccgttc caaggttctt
     9181 gcccaggctt taaacttatc tagtttactt gctgaacctg tgatttctgc ttctgagata
     9241 ccattagccc gcatcaagcg ccacttataa tggtcaccac ccaaccacag atctacaata
     9301 tcttcataaa ccttatcttc aaaaatttcc ttaggatcca agtggcaatg gaaatcatag
     9361 atagggagct ctgctatttt cccgtaaagc tgcttagcag gctcattttt tagcataaag
     9421 tttttgtcat taaaactcat ttcatccctc caaagctgca acaaaactgc gagcaatcgt
     9481 cgttacactt tcatagcctt cagcctgcac tcgacttgcc agagccgaac cgactccaac
     9541 agcacaagca cctgcctttt tccaatctgc aacattttca accgaaactc caccagaagg
     9601 catcaaatcc acttggggca ctggtccgtg aatatccttg ataaatccag gacccaagac
     9661 accaccaggg aaaagcttga taataggaca tcccgcctga ctggctgtga caatctccgt
     9721 tgcagttgca caacctggga agtagaatac ctcagcctct tgcgccaaat cttgaatttc
     9781 tttatcaaaa tgaggactaa ccagaaaact agcaccagcg tcaattgcct cttgtgcgag
     9841 agatacattc attacagttc ctgccccgat gactacggaa gaatcgtctg agaactcctc
     9901 ttgtaattct ttgataactg tcgctgcatt tggagtcgaa aatgtaattt caatatttcg
     9961 aatacctccc aaaatcgcat ggcgagcgat ttctttcgca tcttcttcat cttttccgcg
    10021 aatcactgca aaaaagtaat tttcttttaa ttgctttaac atcttgacct ccaattagaa
    10081 agcgttgtca tttatagcta tagtatacaa ttcgtcagat gatttgtcaa taaaaaagca
    10141 aaaaataccc agaaatttat tctgggcagt atatttttta tttctattta tgatcattga
    10201 gaccatgcaa ggtcatatct ttatcgaacc attcgcttaa aacaacctgt cttactgata
    10261 taatatgtgc taacatgcta tcatatgctg caacaggatg gcgttgcttg atagccatta
    10321 agatattcct gtgggcctgt aaactatctg atttcatctg acgatttgaa taattttcat
    10381 tgatcagatg aatagattga ttaatgacgg gcatgagact tgtcatagcc agattcccac
    10441 tcatctcagc cagcatacag tggaatttca catccaactc caaatgcttc gtgtctccag
    10501 cagcaacggc ctcttcaata gcaaggacaa tttcttctag tcgagcaatg tcttcgtccg
    10561 aggcaaactg agcgacacgc tccgcaattc tcggttcaag caaataccgc acttcaaaca
    10621 aatctgtcgt caacttcaca cggtctctta ctaaagaaaa acctagggga tcctctgata
    10681 ctcctttttt agagctgata taggttcccg acccttggcg cacctccagg atatttcgag
    10741 tagccaaact tcgaacagct tcacgaacag tcgaacgtcc aacttctaaa tcttgggcca
    10801 attcatactc atttggaagc ttatcaccaa cttcatatcc tctttccaaa atcaattcca
    10861 ataagcgctc tgatgctttt tctaccaagg gtttcgccat gtgcttggtc ctccaataca
    10921 actttctatt tgctactatt atagctcatt tcctcttata atggtagttt ggaatggcag
    10981 tccaacgttt cttgatttct cttacaattt gcttgggttg tcgatttctt gagaataaac
    11041 ccttatgatt tccttgaata cgaatgatac caactgtagt ttcaaaatct gcaaaattcc
    11101 atacctgttc accaactaaa ttcggaattg aatcaaagac gcgatggttc atatcgtagt
    11161 aatccacctg aaattcctct gtataaggaa tatcccacat cgaatgcaaa cctggaagag
    11221 tatctgcacc atattctgta atcaaaatcg gcttgtcagg ataaagtttt tgccaagtct
    11281 ccaactcttg acggagccct ttctctgccg ccttcaagtc accatgagca acataccaac
    11341 catagtaacg attgagacag acaacatcga ccaaatccat aacctcatcc ttatcaggcg
    11401 ttgctgtcat aatattgacc aaggtcacag gacgcttaga cggatctctg tccctcatgc
    11461 gctgaatcag aggttcaaag taagcacgtg ctcccttttc atgccctgcc ggttcattgg
    11521 caacaaccca catcactaca gaaggatgat tcttatcacg cgctatcaat tcatcaatca
    11581 ccagctcatg agcctccttg gtttgcataa cttcccaagt attttttgct tcttcagaat
    11641 cacctgtcaa attcaaggct gcattgaaaa gctgaaatag gccaactgct ggcacttcat
    11701 caaggacgac aattcccaaa cgatctgcca gccgcatcat ttcctcagaa tagggataat
    11761 gggatgtcct aaaggaattt gctccaatat ctttaagcaa attcaaatcc ataagattgg
    11821 ctgcttcatt gaaaccacga ccattaataa aggtatcttc atgtttacca aatcccttga
    11881 aatagaaagg ttttccattg atgaaaaatt gcccattttc aactgctaca ctacgaatgc
    11941 cgaattgttc tgagtaggta tctagcaagt tttctccgtc aaatagttca acttttgcag
    12001 tatagagata ggcatccaag acctcccaaa ggcgtggatg ttcaatgacc atttgtccat
    12061 tttcaagaag acctacttcc tgtccctctt tatctaaaat agacatacgg atggaatcgt
    12121 actgcccaac tgtcttcaca tcaacattca ctaccgcctg agtcaaatct tgatttagct
    12181 ccgtccgaat aacaatatcc tcaatcctat ttttgggacg tttatagaga tgaactgtcc
    12241 gctggatacc agcatagt
//
LOCUS       DASFRC010000063        11940 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.063, whole genome shotgun sequence.
ACCESSION   DASFRC010000063 DASFRC010000000
VERSION     DASFRC010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 11940)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11940)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11940
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.063"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..476)
                     /locus_tag="U1087_001176"
     CDS             complement(<1..476)
                     /locus_tag="U1087_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018377592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HEM4755657.1"
                     /translation="MKEWIAKHPDLWEFIKFNVLSNIATITNFCVLWLSTNFLFTALS
                     SQPFHWFIFHYSVENGGLNGFLSFLLAYIAAQVVNYIVQRKLVFGAENDISKTLHWYI
                     LTVVVAGILSIVLPPYTTQLFTSWGLSLGWAQTAANWVNIFVQVAVNYPMMKFVIM"
     gene            complement(515..3424)
                     /locus_tag="U1087_001177"
     CDS             complement(515..3424)
                     /locus_tag="U1087_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HEM4755658.1"
                     /translation="MKAWKKKGALLSLAGALLSGKTVYADSYPSSYQSWDAVGIAKTV
                     FICSAVVVLGLLGFAIYRVVKEKSLSSKKKKLGFGLLALLSIIIVGANYAVNMFVNVI
                     DTYFAPSYADAAKIADAEEVSKSLVTTIQEEGTVLLENKNKTLPLEKSSKVNVFGISS
                     VAITYGGSGSGAADESKNINLQQGLENAGFEVNSELTEFYTENLPEKEGTNIFSLNGG
                     DYNIYEPTQDKYSEELLTNAKNFSDTALVVISRNGGEGADLPQNMAEYQQGDKDKHYL
                     ELQEVEKAMLKTVTENFDKVVVLVNSSNAMELGFLEDAGVDAALWIGGPGSTGLTGVA
                     NILAGEVNPSGRLVDTYAYDLESNPTYWNTGDFSYSNITYEKTPWGAKEPQIFNYKFV
                     NYQEGIYLGYRYYETRFVDNATGQVDESAYDKVVQYPFGYGLSYTNFDQEITSMKEKG
                     DKIEVNVKVTNTGDVAGKEVAQIYYTAPYTEGGVEKSHVVLAGFDKTEVLEPGKSEEL
                     TISFDRDDMASYDEKTEKAYVLDKGDYQIKLMNNAHDVLDSETYTVDSKEVLNQRSSD
                     KAEVTNAFEYTVGDVNYVTRADWDGTLPTERTKDKEASEQIAAEVDRSNFRIDESSET
                     PIDTVTTEDNGLRLVDLIGADYDDERWEQLVAQMSVDEMVNLVGFGGYATGAVKSIDK
                     PAVVDLDGPAGINGIFQGIKGTQYNSEVVVASTWNTDLAEEMGDAFAKEALAHGIVGL
                     YAPAVNIHRSPFSGRNFEYYSEDPLISGKMASSLVAKALENGVYTFTKHFALNDQEDN
                     REGVATWSNEQAMREIYLKAFEIPVKEGGATAIMSSFNRIGTLWAGGNSDLLNTVLRD
                     EWGFRGMVITDFDGQDYMSPDQAIRNGGDLMLTPVGDAPTATSTGTEEGVAALRQASK
                     NILYTVAHSAAFDIYKPKIKWWIVALVASNIALIGLTGLGLVELTGKKKEEKEVA"
     gene            3665..4378
                     /locus_tag="U1087_001178"
     CDS             3665..4378
                     /locus_tag="U1087_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM4755659.1"
                     /translation="MKIAIVEDQKIEQERLSNYIKTYCQKAGISVEISCFNDGLHITS
                     DYQKQFDLIYLDVEMEIMDGMTTAQKIRSVDKEVLLVFVTNHSHVAIQGYSVEAIDFL
                     LKPLSSFVFEEHFKKILRKLPDSQEKQSLYIKSKQSTVKLYQEDIVYLESQGHQVYIY
                     TVDGGLTITHNSLKNLEAMLDSKVFVRAHSAYIINLSHVQKVEGSLVYVTNTALPISR
                     PRKKEFMTALTNFIGDSLL"
     gene            4375..5682
                     /locus_tag="U1087_001179"
     CDS             4375..5682
                     /locus_tag="U1087_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GHKL domain-containing protein"
                     /protein_id="HEM4755660.1"
                     /translation="MINFPDIPRFYTALTESLACLLVCSSLVLSEKWSRKQFRILLIF
                     LIQILLQLAAGKLPLLFWTVGMGINIAWMFVSIRFLGVIHKRTSLYLTAKAFIIAELV
                     ASITWHLYCLTIYQQAVDNLWTQGLFLLITSLLSYWLIYLQDQKVRLEELDKFIEQRD
                     VTVAVFTTLSIFVLSNIGFILSGTRQFQDSTSIFILRTTVNLSGLLLLFTQESQQYDR
                     YLRQELTSINNMFQLQYKQYQAYRENSEILDRKVHDLKHQLTIIQQESDKTKKEQYLE
                     EMSEVIQTLDAKIETGNPVLDTILSQKNYYCLQNGINFTCIVQGEPLHFMDVMDISAL
                     FGNAIDNAIEAVEKIDNPEQRLITLKVASHQQFLIIRLDNYDTSSLDLSTGQLPATSK
                     TNKDYHGFGLKSMEYVANKYGGNLTLSKEDNWVQLKIILPLQA"
     gene            complement(5721..7067)
                     /locus_tag="U1087_001180"
     CDS             complement(5721..7067)
                     /locus_tag="U1087_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEM4755661.1"
                     /translation="MKKKIVLLLGAIAVIVLIWSAIAGQRQQSYAEAELRDQDKIWII
                     TDLHHLSQDLFDDGEAFSHIEKTAAGKDLRYGKERMEALVEQVEREHPSLLLVSGDLT
                     LNGEKQSMIELEQYFTRIEEKGTEVLVIPGNHDVSSGWARTFKGDQQIVTDQVTAQQF
                     AELFAHHGYQQASSRDKASLSYLAKPFSNAWFLMIDSNIYSDGYGKGAPPTNGRIKKE
                     TLDWIEVQLKSAKEAGVSLIPVVHHNVLQQHAMLSKGYTLDNAADLKTLFNQYGIQFG
                     FSGHTHSQNIVKEDLGNVIYTEVVNGAFSIYLAIIGQLSLDDTSIHYQKTQLDMASWA
                     EKHQPSDPNLQDHVTYLQTVFDNTSDIMVHNVLNDERWYDGETADDISQFIMPANRAY
                     FSGEKLDQTWLDEKVFSSQAYQTLQAASPRSFLADYLDVIIKRSQSRDVEQVTVSK"
     gene            complement(7153..8670)
                     /locus_tag="U1087_001181"
     CDS             complement(7153..8670)
                     /locus_tag="U1087_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavocytochrome c"
                     /protein_id="HEM4755662.1"
                     /translation="MKKKAWLGLLMSLLAVLFLVACGGKSEKTATSSSSTTSSSSEEA
                     VSGASEKVYTDPSELKDSYDVIVVGSGGAGMSAAISAKDAGASVALLEKMPVIGGNTA
                     KSSAGMNASQTKFQEAEGIADTNDKFYEETLKGGKGTNDPELLRYLVDNSASAIDWLD
                     GMGITLSNLTTTGGMSEKRTHRPADGSAVGGYLVNGLYHNLVERKVPIFVNADVTKLQ
                     DKDGAVTGVEVKIAGETKQISAKAVVLATGGFGADLEMVAKLNPALKGYVTTNQEGST
                     GDGIALAESEGAATVDMEQIQIHPSVEQETSYLITEAVRGEGAILVNSKGERFVNELE
                     TRDKVSAAINSLEPNYAYVIFDDALKDRVKAIAQYEEKGLVKTGATLADLAKEIGVPA
                     DTLQTTLDTWNKAVADKNDAAFGRTSGMDHALNTGSYHAIKVAPGVHHTMGGVKINTN
                     TEVLKTDGSAISGLYAAGEVTGGVHGQNRIGGNAVADIIVFGRQAGEQAAGFAKK"
     gene            complement(8805..9254)
                     /locus_tag="U1087_001182"
     CDS             complement(8805..9254)
                     /locus_tag="U1087_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol reductase thioredoxin"
                     /protein_id="HEM4755663.1"
                     /translation="MWRKYFLLVLLAILVVGGAFFLSQSAATPNESDYVKAVKSYQAI
                     SIDEVEQKVQDEEEFILYIGRETCPYCRDFVPKLTEVVERSRATIYYLDSESDPNGKI
                     QQFRQSQGLATVPSLTYYKSGKLSGILRKGSQATISEIASFLSLQGQ"
     gene            complement(10239..10670)
                     /locus_tag="U1087_001183"
     CDS             complement(10239..10670)
                     /locus_tag="U1087_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1492 domain-containing protein"
                     /protein_id="HEM4755664.1"
                     /translation="MTIEELKQRLEGIKWIDKEISQLYLELQYLETGLFKQTTLTQAR
                     VQTSRVNSSESQLVAQLAIKENITNRIDRLTKERLELISMIDTLRNPKYRLALNLYYI
                     QQKVDLEAGEIMNVSKTTFFRYLKLALTELADLITHAEKEK"
     gene            complement(11292..11873)
                     /locus_tag="U1087_001184"
     CDS             complement(11292..11873)
                     /locus_tag="U1087_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755665.1"
                     /translation="MTLQTFSDTPNTFTFNYTFKDFDTAQVAGHALMGYVTGTFEQPA
                     IEVHYKSDKVGGDYNRLAVEYVADTELTEVFQRICESFQDYYNNPDELTSGDLNEYEQ
                     EQEIEQEYTRQRVEQLKQSENFESLLERVVAYELELLDYAERLLSDDPIPMDSETGYL
                     TLDLIGAKGVGLFKSLDEDNEYSGLAYYNAEAE"
BASE COUNT         3329 a         2713 c         2183 g         3715 t
ORIGIN      
        1 ttcatgatta caaacttcat cattggatag ttgacagcca cttgaacgaa aatattgacc
       61 cagttggctg ctgtctgtgc ccagcccaag ctcaagcccc atgatgtaaa gagttgagtg
      121 gtgtaaggcg gcagcacaat ggacaaaatt cctgcaacga caacagtcaa gatataccaa
      181 tggagggttt tggatatatc gttttctgct ccgaatacca acttcctttg aacaatatag
      241 ttgacaacct gtgccgctat gtaagccaag aggaaggaga gaaagccgtt caatccgcca
      301 ttttctacgg aataatgaaa gataaaccag tgaaatggct gacttgacaa ggctgtaaag
      361 aggaaattgg ttgacaacca aaggacgcag aagtttgtaa tagttgcgat gtttgataag
      421 acattaaact tgataaactc ccacaaatct gggtgtttgg caatccattc tttcatacgg
      481 tctcctatgc aagacaaggg ggaaatcccc cttgttatgc tacttctttt tcttcttttt
      541 tcttacctgt caactcaacg agtccaagac ctgtcaaacc gataagggca atattgcttg
      601 ctactaaagc tacaatccac cattttattt ttggtttata gatgtcaaag gctgcagaat
      661 gagcaacggt gtacaagata tttttgcttg cctgacgaag ggctgcaaca ccttcttcag
      721 tacctgttga ggttgctgtc ggtgcatcac ctactggggt taacataagg tcgccaccat
      781 tgcggattgc ttggtctgga ctcatgtagt cttgaccgtc aaagtccgta ataaccattc
      841 ctctgaagcc ccactcgtca cggagaactg tattcaagag gtcgctatta ccccctgccc
      901 agagggtacc aatacggtta aaggatgaca tgatagcagt cgctccgcct tctttgacag
      961 gaatttcaaa ggctttgagg tagatttcac gcattgcctg ttcatttgac caggttgcaa
     1021 caccttcacg gttgtcttct tggtcattga gagcaaagtg tttggtaaag gtataaacgc
     1081 cgttttcaag agcttttgcc acaagtgaac ttgccatttt acctgaaatc agtggatctt
     1141 ctgagtaata ctcaaagtta cgtcctgaga atggtgaacg gtggatgtta actgctggtg
     1201 catatagacc aacgataccg tgtgccaagg cctctttggc aaaagcatca cccatttctt
     1261 ctgccaagtc tgtgttccaa gtagaagcaa cgacaacctc tgagttgtat tgggtacctt
     1321 tgataccttg gaagataccg ttgataccag caggtccatc caagtcaaca acagctggtt
     1381 tatcgattga tttgactgct cctgttgcat aaccaccaaa gccaaccaag ttgaccattt
     1441 catcaacaga catttgagca actagttgtt cccaacgctc atcatcatag tctgcaccaa
     1501 tcaaatcaac caaacgaagt ccattgtctt ctgttgtcac agtatcaatc ggtgtttctg
     1561 aagattcgtc aatgcggaag ttcgagcgat caacctcagc agcaatttgc tcactagctt
     1621 ctttatcttt tgtacgttcg gttggcaaag taccgtccca atccgcacgg gttacatagt
     1681 tgacatcgcc cacagtatat tcaaaggcat tggttacctc agccttatca gatgagcgtt
     1741 ggttcaaaac ttccttgctg tcaacggtgt aggtttctga atccaaaaca tcatgagcgt
     1801 tgttcatgag tttgatttgg tagtcacctt tatccaagac ataggctttt tctgtctttt
     1861 cgtcgtaaga tgccatatca tcacggtcga aggaaatggt taattcttcg ctcttacctg
     1921 gttcaagcac ttctgtctta tcaaaaccag ccaagaccac gtgagatttt tcaacaccac
     1981 cttccgtata tggagctgtg taatagattt gtgctacttc tttaccagcc acatctccag
     2041 tgttggttac cttgacattg acctcaatct tgtcaccctt ttctttcatg ctagtgattt
     2101 cttggtcaaa gttagtatag ctcaaaccgt aaccaaatgg gtattgaaca accttgtcat
     2161 aggccgattc atccacttga ccagtcgcat tgtcaacaaa acgtgtttca taatagcggt
     2221 agcccaagta aatgccttct tggtagttga cgaatttgta attgaagatt tgtggctctt
     2281 ttgctcccca tggagttttt tcataggtga tattggaata agagaagtca cctgtattcc
     2341 agtaggttgg gttgctttcc aagtcgtagg cgtaggtatc gaccaagcga ccagatgggt
     2401 tgacctcccc tgccaagata ttggctacac cagtcaagcc ggttgagcca ggaccaccaa
     2461 tccatagagc tgcatcgaca cctgcatctt ccaagaatcc aagctccata gcatttgaag
     2521 agttgactaa gacaacaacc ttatcaaagt tctcggttac agttttcaac atggcttttt
     2581 caacttcttg aagttcaagg tagtgcttgt ccttgtcacc ttgttggtat tctgccatgt
     2641 tttgtggaag gtctgcacct tcaccaccat tacgagaaat gactaccaag gctgtatctg
     2701 aaaagttctt cgcgtttgtt agcagttcct ctgagtattt gtcttgagtt ggctcgtaga
     2761 tattgtaatc tccaccattg agagagaaaa tattcgtccc ttctttttct ggaaggtttt
     2821 ctgtgtagaa ttccgtcaat tcgctgttaa cttcaaaacc agcattttcc agaccttgtt
     2881 gcagattgat gtttttggac tcatctgcag cacctgaacc agatcctccg taagtaatgg
     2941 ctacagaaga aataccaaag acattgacct tggatgattt ttcaagtggt agggtcttat
     3001 tcttgttttc aagcaagaca gtgccttctt cttgaatggt cgttaccaag gacttagaaa
     3061 cttcttctgc atcagcaatt ttagcagcat ctgcataaga cggcgcaaaa taggtgtcga
     3121 tcacattgac aaacatattg acagcatagt tagctccaac gataatgata ctcaagagag
     3181 ccaagaggcc aaagcccaac tttttcttct tgctagagag ggatttttcc ttcactacgc
     3241 gataaatcgc aaatcccaat aagccaagga caactacagc agaacagata aatactgttt
     3301 ttgcaatccc gaccgcatcc catgattgat agctacttgg atagctatct gcatagactg
     3361 tttttcctga tagcagagct cctgctaggc tcaagagagc ccctttcttt ttccaagcct
     3421 tcataagact tcctcctaaa cgtttcggct ttcatgtaag ccttttcttt ttcttgaatc
     3481 cactatatca attaacatac tcaatgaaaa ccctttcttc ataatctgtc atttaacctt
     3541 cataatttgt aaattgagaa aaataatcct actcttgcta ttttatcatt tgattttcta
     3601 aaatattgct aacaatttca ttttaatttt gatatactga tagaaaataa aaagggggtg
     3661 ttttatgaaa atcgcgattg tagaagatca aaaaattgag caagagaggc tgtctaacta
     3721 catcaaaacc tactgccaaa aagctgggat ttcagtggaa atcagctgtt ttaatgacgg
     3781 tctccatatc actagtgact atcaaaaaca atttgacctg atttacctag atgtcgagat
     3841 ggagattatg gacgggatga ccaccgctca aaaaattcgg tctgtggata aagaagttct
     3901 attagtattt gtgaccaatc attcccatgt cgctattcag ggttattctg ttgaggccat
     3961 tgattttctt ctcaaaccac tgagctcctt tgtctttgag gaacatttta aaaaaattct
     4021 tagaaaatta cccgatagcc aagagaaaca aagtttatat attaaaagca agcagtccac
     4081 cgtaaaactc tatcaagaag atattgttta cctagaaagt caaggacatc aggtttacat
     4141 ctacacagtt gacggtggcc taacgattac ccataatagt ctcaagaatc tcgaagccat
     4201 gttagacagt aaagtgtttg tacgagccca ttcagcttat atcatcaatc tttcccacgt
     4261 tcaaaaagtg gaaggtagcc tagtttacgt cacaaataca gccttgccga ttagccgccc
     4321 aaggaaaaaa gaatttatga cagctctaac caacttcatc ggagatagcc tactatgatc
     4381 aatttccctg atattccacg tttctatact gcactaacag aaagcttggc ctgcctactg
     4441 gtatgttcct cgcttgtttt gtctgaaaaa tggtcacgca aacagttccg catcctcctg
     4501 attttcctca tacaaatctt acttcaacta gcggctggca aactcccctt gctcttttgg
     4561 actgtgggaa tgggcatcaa tatcgcttgg atgtttgttt ccattcgatt tcttggagtt
     4621 atccacaaga ggactagtct ctatttgaca gcaaaagcct ttatcattgc cgaattagta
     4681 gcctccatta cttggcatct ctactgtttg acgatttatc aacaagctgt ggataacttg
     4741 tggacacagg ggttatttct gttgataact tctctacttt cctattggct catctatctt
     4801 caagatcaaa aagtacgctt agaagaattg gataaattca ttgagcagcg agatgttact
     4861 gtagccgtct ttacaacctt atctatcttt gttctcagta atattggctt catcctctca
     4921 ggcacacgcc aatttcaaga ctcaaccagc attttcatcc ttcggacaac cgtcaatctc
     4981 tctggtcttc tactcctatt cacccaagaa tctcaacaat acgatcgcta tttacggcag
     5041 gaattgactt ctatcaataa tatgtttcaa cttcaatata agcaatacca agcctatcgt
     5101 gaaaatagtg agattcttga ccgtaaggtc catgatttaa agcatcaact gaccatcatt
     5161 cagcaagaat cggataaaac caaaaaggag caatacctag aggaaatgag cgaggtgatc
     5221 caaacccttg atgccaagat tgaaacagga aatcccgttc tagataccat tctcagccag
     5281 aaaaattact actgtttgca aaatggaatc aactttacct gtattgttca gggagaaccc
     5341 ctccatttta tggatgtaat ggatatttca gctctgtttg gaaatgccat cgacaatgcc
     5401 atcgaggctg tggaaaaaat agacaatcct gaacaacgct tgattacttt aaaggttgcc
     5461 agccatcagc aatttctcat catccgatta gacaactacg atacttcttc acttgactta
     5521 tccacaggac agctccctgc aacatcaaaa acaaataagg actaccacgg atttggtctt
     5581 aagagtatgg agtatgttgc caataaatac ggtggcaatc tcacacttag caaggaagat
     5641 aattgggttc aactaaaaat cattctccct ttacaagcat agaaaaatcc cgtttgaagg
     5701 cgggattttc tttctattca tcatttagaa accgttactt gctccacatc tcgactttga
     5761 ctccgtttta taatcacatc aagataatca gccaagaaac ttctcggtga tgctgcttgc
     5821 aaggtctgat aagcctggct tgaaaatacc ttctcatcta gccaagtctg atctagtttt
     5881 tctcctgaaa aataagcacg gttggccggc atgataaatt gtgaaatatc atctgccgtc
     5941 tcgccgtcat accaacgctc atcgtttaac acattgtgga ccatgatgtc actggtattg
     6001 tcaaagacag tttgtaagta ggtaacgtga tcctgcaaat ttggatcact aggttggtgc
     6061 ttttctgccc acgaagccat atcaagttga gttttttgat agtgaatgct tgtatcatca
     6121 aggctcaatt gaccgataat agctagataa atagaaaatg ctccattgac cacttctgta
     6181 tagatcacat tccccaagtc ttccttaaca atattctgag aatgagtgtg ccctgaaaaa
     6241 ccaaattgaa tgccatattg attgaacaag gtcttcaaat cggcagcatt atccaaagta
     6301 tagccttttg agagcatggc atgctgttgc aagacattgt gatggacaac aggtatcaaa
     6361 ctcactccag cttccttagc tgacttaagt tgtacttcta tccaatccaa ggtctctttt
     6421 ttgatacgtc cattggttgg aggagctcct tttccgtagc catcagagta gatgttgctg
     6481 tctatcatca gaaaccaagc attggaaaat ggtttggcca ggtagctcaa tgaggctttg
     6541 tcacgactgc tagcttgttg ataaccgtga tgggcaaata gctctgcaaa ttgctgagca
     6601 gtgacctgat ccgtcactat ctgctggtct cccttaaagg tcctagccca tccactggaa
     6661 acatcatggt taccaggaat caccaaaacc tccgttcctt tttcttcaat ccgggtaaaa
     6721 tattgctcca actcaatcat gctctgcttt tcaccgttta gagtcaaatc cccactgact
     6781 agtaacaagg aaggatgttc acgctcaacc tgctcaacca aagcctccat ccgctctttt
     6841 ccataacgta aatccttacc agcagctgtt ttttctatat gggaaaatgc ctctccatca
     6901 tcaaataaat cctgtgacaa atgatgcaaa tcagtgataa tccagatttt atcctggtcc
     6961 cttaattcag cctcggcata ggattgctga cgctgaccag caatagcaga ccaaatcaaa
     7021 acaatgactg caatagctcc taacaataat actattttct tcttcatacc ttagaagtat
     7081 atcatcttag agatagaggg acaagaaaaa gaagctcgac cttctttctg ccgagcctct
     7141 tatgtctaca atttatttct tagcaaatcc agctgcttgt tcaccagcct gacgaccaaa
     7201 tacgatgatg tctgctactg cattaccacc aatacggttt tgaccatgaa caccaccagt
     7261 tacttcacca gcagcataaa gaccagaaat tgctgaacca tctgttttca atacttcagt
     7321 attggtattg attttcacac cacccattgt atggtgaaca ccaggtgcaa ctttaatcgc
     7381 gtggtaagaa ccagtattca aagcatggtc catacctgat gtacgaccaa atgccgcatc
     7441 attcttatct gctacagcct tgttccaagt atcaagtgtt gtttgaagtg tatccgcagg
     7501 tacaccaatt tctttagcca aatctgcaag tgtagccccc gtttttacaa gacctttttc
     7561 ttcgtattga gcaatcgcct tcacacgatc tttcaaggca tcatcaaaga taacataagc
     7621 atagtttggc tccaagctat tgatagccgc agaaacttta tcacgagttt ccaattcgtt
     7681 aacaaaacgc tcaccttttg aattgacaag gatagcacct tcaccacgaa cagcttctgt
     7741 aatcaagtaa gaagtttctt gctcaacact tgggtgaatt tggatttgtt ccatatcaac
     7801 agttgctgca ccttctgatt cagcaagtgc aataccgtca cctgttgaac cttcttggtt
     7861 ggttgttaca taacctttca atgctgggtt taatttagca accatttcca aatcagcacc
     7921 gaaaccacct gtcgccaata caactgcttt agctgagatt tgcttcgttt caccagcaat
     7981 cttcacttca acacctgtca ctgctccatc cttgtcttgg agttttgtaa catctgcatt
     8041 gacaaaaatt ggtactttac gttcaacaag attgtggtaa agaccattta ccaagtagcc
     8101 accaacagct gaaccatctg ctggacggtg ggtacgtttc tcgctcatac caccagttgt
     8161 agttaggttg ctaagagtga tccccattcc atccaaccag tcaattgcac tagcagagtt
     8221 atctacaaga taacgaagca attcaggatc gtttgtccct ttaccacctt taagcgtttc
     8281 ttcgtagaat ttatcgtttg tatcagcaat accttccgct tcttggaatt tagtctgtga
     8341 agcattcata ccagctgatg atttagccgt attaccaccg ataacaggca ttttttccaa
     8401 gagagcaaca ctagcaccag cgtctttagc tgagatagct gccgacatac ctgcaccacc
     8461 tgaaccaaca acgataacat cgtagctatc tttcaactca gatggatctg tataaacttt
     8521 ctcagatgca cctgaaacag cttcttctga tgaagaagaa gtcgtagatg atgaagatgt
     8581 agctgtcttt tcagacttac ctccacacgc cactaaaaac aaaacagcaa gtagactcat
     8641 caacaagcct aaccaagctt tctttttcat gataaacctc caatttttat ctgatattac
     8701 tattatacaa gattgtgaaa tgtttttcaa tttgttttga aatattttca caaacatgaa
     8761 caaaaaaatg tatgattcaa acatcacaca ttttatatag ctatttactg cccttgaaga
     8821 gataaaaagc tcgctatttc ggatattgtt gcttggctcc ctttacggag tattccagat
     8881 aatttacctg atttatagta ggttaagcta ggaaccgtag caagaccttg actctgtcga
     8941 aattgttgta tttttccatt cggatccgac tcgctatcta aatagtagat agtcgcacgt
     9001 gatcgctcta ctacctctgt taatttcgga acaaaatcac gacaataagg gcatgtctca
     9061 cgacctatgt ataatataaa ttcttcctcg tcttggacct tttgctccac ttcgtctatc
     9121 gaaatagcct ggtaactctt tacagccttc acatagtctg attcatttgg cgtagccgct
     9181 gattgagata gaaagaaggc cccacctacg accaaaatag ctaatagcac tagcaaaaaa
     9241 tacttacgcc acataatccc tcctcaaata cagacaaaaa gcccttgtaa atagggcttt
     9301 taaaatatcg atacaaatct tagagcattt tgttgtacag ttaagattac ttagctttac
     9361 acgttcttta cactccctaa cccctgattt gatgggcttt ctaactaaat aacttataat
     9421 tagacagtgt taaatatccc ccaaaagttc gccaaaaggg gagcaaaaaa gggcctttca
     9481 gtagccctaa gttatgagtt cagcaggcaa gaaactagca ccgccccaag gtgctttttt
     9541 agttccctgg tatcttgctg atactattgt atcaaaaagc acgcgcttat attctgttat
     9601 cttcacaatt tgatactttt gttaagttat cttgcttacc ttcgtttcta tcttccaata
     9661 ttggccgttt ttccaagata gcgcgtgatc atgtattttc agactcgcat aaccttccca
     9721 aaacctttac attatcaaaa cttttaaaaa gggaaaattg tactcgaaaa agttcggcgt
     9781 tgtagcccct tggccaaacc tacccccgtt ctaaaaatga ggggactaat cacaaccttt
     9841 actatatcct actgtgtttt actgtatcca ctagtattgt gttactaatc ctatgatttt
     9901 acaaaatcgt ttgctgttcg cattatacgc tctttgaaac tagccaaaac gtaacgcttt
     9961 ttgttaggat taaccccatt ttgttaggat tgtgttaccc tttgggagac ttacaaccct
    10021 ctaaaaactc aataatacca atggttttag ctgtttttac cccctttaga atttttggcg
    10081 tgagaaaaaa atgtacaatg acggcgtgaa ggtcggacgt gtacccatgg taggttagtc
    10141 ccccccgcat tctaaaaggc ctctagctcc gtttctaaag gactgattta atccctggct
    10201 tatttatcgg acaagctcaa acacgcgcca aaacatggct atttttcttt ctctgcatga
    10261 gttatcaagt cagctagctc agtaagtgct aattttaaat atctaaaaaa tgttgtctta
    10321 ctaacattca ttatctcccc tgcctccaaa tccacttttt gttggatata gtaaaggttt
    10381 aaagctagac ggtatttagg atttcttagt gtgtcaatca tgctaatcag ctccaggcgc
    10441 tccttagtta gcctgtcaat tctgtttgtt atgttctctt taattgctag ctgggcaact
    10501 aactgacttt cagaactgtt taccctgcta gtctgtaccc tggcctgcgt tagtgttgtc
    10561 tgcttgaata gtccagtttc caagtattga agctccaggt aaagctgact gatctctttg
    10621 tcaatccact taataccctc taacctctgc ttcagttcct ctatggtcat tgttacccct
    10681 cctatggtaa aataagcttg ttgaaacttc ttaccctgcg tgtgtctcgt ggggcttttt
    10741 tatgcctaaa attctgtaac tacccgcgcg tgttcttttg ttcgtccatg gttcaatggg
    10801 ctgttttatc tttgttcact ctctgttcaa tcacgcgcca ccgtgtctaa acattatttc
    10861 ttttagactg ccgaaaatgc caaatacctc cccggaatct ccctattttt tacttatcca
    10921 acctagccta aacctaatca ttctcattca tttaatttta agggttatat agcgttcgga
    10981 tattcgtcgt tttgaaaaat caaaaaacgt tccgtatttt tgcacccttt caaccctgtg
    11041 aatgcttgat agtgctagct ttttagcccc aaccgttccg cctttatttg tttggtaaag
    11101 cgaacgtttg tagtattcgt ttgttttgga aattgctaaa gtacttcaac cctatagcaa
    11161 tttcaaactt aggttttctt agtattgcct atatagattt gattgtagta ttttgtagta
    11221 tcttatatct gttttcatct gaggtttttt gaggtttacg aaacagcaaa agaggcgttt
    11281 gcctctctct gctattctgc ctcagcgttg taataagcaa gcccgctgta ttcgttgtct
    11341 tcgtccagtg acttgaatag tcctaccccc ttagcgccaa ttaagtctag tgttaagtag
    11401 cctgtttctg aatccattgg aatagggtca tcactcagca aacgttccgc atagtccagt
    11461 aactccagct cataagccac caccctttca agcaagcttt caaagttctc tgactgcttg
    11521 agttgttcca cgcgctggcg ggtgtactcc tgttcaattt cctgttcttg ttcgtattcg
    11581 ttcaagtctc cgcttgttaa ctcatcagga ttgttgtagt agtcttggaa actttcacaa
    11641 atccgctgga atacttcagt aagttcagtg tctgccacat attccaccgc caaacggttg
    11701 taatctccgc ccactttgtc actcttataa tgcacttcga tagctggttg ttcaaatgtt
    11761 cctgtcacgt atcccataag cgcgtgccct gcaacttgtg cggtgtcaaa gtctttgaat
    11821 gtgtagttga atgtgaatgt gtttggtgtg tctgaaaatg tttgtaatgt catggtgtta
    11881 ttctccttgt tttagtttgt tgattgagta gcgtttgtcc ttgattgtaa acgacttgaa
//
LOCUS       DASFRC010000064        11799 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.064, whole genome shotgun sequence.
ACCESSION   DASFRC010000064 DASFRC010000000
VERSION     DASFRC010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 11799)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11799)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11799
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.064"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(197..1552)
                     /locus_tag="U1087_001185"
     CDS             complement(197..1552)
                     /locus_tag="U1087_001185"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEM4755666.1"
                     /translation="MKVIKFGGSSLASAGQLEKVFNIVQSDSERRFVVVSAPGKRNAE
                     DTKVTDALIKYYKEYVNGKDVTASQEWIINRYQAMVDELGFTANSMKKIADSIISLAS
                     LPIDDNEFLYDAFLAAGEDNNAKLIAEYFTHRGLPARYVHPKKAGIIVSSEPGNARIL
                     PSSYDKIEELRDTDEVLIIPGFFGVTVDNQICTFSRGGSDITGSIIAAGVKADLYENF
                     TDVDGIFAAHPGIIKNPHSIKELTYREMRELAYAGFSVLHDEALLPAYRGRIPLVIKN
                     TNNPTHPGTRIVHKHTEQTVPIVGIAADDGFVSINLSKYLMNREVGFGRKVLQILEDL
                     NIRWEHMPTGIDDLSIVVRERELTPIKEEEILRQLNTKMEVDKAEIEHGLSIIMIVGE
                     NMKSHVGVTATATTALSKQNVNLAMISQGASEVSVMFVVKTEEKKRALHALYEAFFNE
                     Q"
     gene            1729..2370
                     /locus_tag="U1087_001186"
     CDS             1729..2370
                     /locus_tag="U1087_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEM4755667.1"
                     /translation="MVKAIIFDMDGVLFDTETFYFQRRVDFLATKGLSVDHLAPSIFV
                     GGRASQIWQRILGDDYDNWDVPALEEEYRVYKEKRPTPYAERIFPEVKAVLERLTIQG
                     IPVVLASNTDRSEIERALLDAGIRSHFSHIFSAMDCEAPKPDPTVYMKAASATGVAKS
                     DILVFEDSAKGIEAAKKAGLTVWAIRDQHYGIDQSKADKLVDNLEEAFDLLRF"
     gene            2807..3598
                     /locus_tag="U1087_001187"
     CDS             2807..3598
                     /locus_tag="U1087_001187"
                     /EC_number="4.2.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase"
                     /protein_id="HEM4755668.1"
                     /translation="MDYQTIRYEVIDSVAILTLNRPEVANGFNIPMCEEILEAIRLAE
                     GDASVKILQIQAQGSIFSVGGDLVEMKRAVDDDDIASLVKIAELVNDISFAMKKLSKV
                     VIMVTDGAVAGAAANMAVAADFVIASSKTKFIQAFVGVGLAPDAGGLFLLSRAIGANR
                     ASHLAMTGEGLSADKALEYGIIYKLAEPEKLEKTVAQVIKKLLRGSVNSYAAIKQLTW
                     ESQFKDWESYRRLELDLQETLAYKEDFKEGVRAHAERRRPVFTGD"
     gene            3679..4113
                     /locus_tag="U1087_001188"
     CDS             3679..4113
                     /locus_tag="U1087_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM4755669.1"
                     /translation="MEDPKVNEYLTAIFNNVLVIEETSLRGSRFNDISIKEMHTIDVI
                     GSIDGATPSDVARTLMVTLGTVTTSLNNLERKGYVERIRSTKDRRVVHLYLTKKGRLV
                     YRLHQRFHNEMVKQITDGMDETEYQVMKKGLMKLYHFLEDLK"
     gene            4110..5087
                     /locus_tag="U1087_001189"
     CDS             4110..5087
                     /locus_tag="U1087_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HEM4755670.1"
                     /translation="MRNHAKISQVAHYLPKKIVTNDDLAQQMDTSDEWIRSRTGIGQR
                     HIVTGETTSDLASQVARKLLEKSQLDASEIDFIIVATITPDASMPSTAAMVQAAIGAK
                     NAFAYDLVAACSGFVFALSTAEKLLASGVYKRGLVIGAETLSRSVDWSDRSTAVLFGD
                     GAGGVLLEACEQPTFLAEILRTDGGRGASLTAGIDQKETPFSTQSRQQPFIQMEGRAI
                     FEFATRDVTATMAELLEQADMTVDCVDYFLLHQANIRILDKMARKLGVAREKFPANMD
                     KYGNTSAASLPILLSECVESGMLRLDGSQTVLMAGFGGGLTWGTLLLQL"
     gene            5147..5371
                     /locus_tag="U1087_001190"
     CDS             5147..5371
                     /locus_tag="U1087_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEM4755671.1"
                     /translation="MAVFEKVQEIIVEELGKDAEEVTLTTSFEDLDADSLDLFQVISE
                     IEDAFDIQIDTEEGLTTVGDLVAYVEEKTK"
     gene            5541..6506
                     /gene="fabK"
                     /locus_tag="U1087_001191"
     CDS             5541..6506
                     /gene="fabK"
                     /locus_tag="U1087_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-[acyl-carrier-protein] reductase FabK"
                     /protein_id="HEM4755672.1"
                     /translation="MKTKIIELLDIKYPIFQGGMAWVADGDLAGAVSNAGGLGIIGGG
                     NAPKEVVKANIDKVKSITDKPFGVNIMLLSPFADDIVDLVIEEGVKVVTTGAGNPGKY
                     MERLHAAGITVVPVVPSVALAKRMEKLGVDAVIAEGMEAGGHIGKLTTMTLVRQVVEA
                     VSIPVIAAGGIADGAGAAAAFMLGAEAVQVGTRFVVATESNAHQAYKEKVLKAKDIDT
                     TVSASIVGHPVRAIKNKLSSAYAAAEKDFLAGKISADAIEELGAGALRNAVVDGDVTN
                     GSVMAGQIAGLVSKEESCEDILKDIYYGAAKVIREEASRWASVGE"
     gene            6508..7428
                     /gene="fabD"
                     /locus_tag="U1087_001192"
     CDS             6508..7428
                     /gene="fabD"
                     /locus_tag="U1087_001192"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HEM4755673.1"
                     /translation="MTKTAFLFAGQGSQTVGMARDLYEYYPIVRETFDQASQILGYDI
                     RDLIDNQEDKLHQTRYTQPAILTTSLAIYRLLAEKRIKPDMVAGLSLGEYAALVASGA
                     LVFEDAIALIAKRGEFMETAAPAGTGKMVAVLNADVSLIEEVCSSVTSGIVSPANYNT
                     PAQIVIGGEVAAVDEAVEALKAAGVKRMIPLNVSGPFHTALLRPASEQLAQALEQVEF
                     SDFQVELVGNTEAKVMKKEDIKSLLTRQVMEPVRFYESIATMQEAGVTNFIEIGPGKV
                     LSGFVKKIDKTAHVIAIEDIEGLQIVLNKS"
     gene            7438..8172
                     /gene="fabG"
                     /locus_tag="U1087_001193"
     CDS             7438..8172
                     /gene="fabG"
                     /locus_tag="U1087_001193"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004229639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-[acyl-carrier-protein] reductase"
                     /protein_id="HEM4755674.1"
                     /translation="MELTNKNVFVTGSSRGIGLAIAHKFASLGANVVLNGRGQLGQDL
                     LDSFSSYGVKVVAISGDISSSADAKRMVAEAVEALGSVDILVNNAGITKDGMALRMTE
                     EDFDTVLKVNLTGTFNMTQAVLKPMTKAREGAIINLSSVSGLIGNAGQANYSASKAGV
                     IGFTKAIAREVAGRNVRVNAIAPGFIQSDMTDVLSDKIKEAMTAQIPMKRFGATEEVA
                     DVAVFLAKQEYLTGQVIAVDGGLTMQ"
     gene            8186..9421
                     /gene="fabF"
                     /locus_tag="U1087_001194"
     CDS             8186..9421
                     /gene="fabF"
                     /locus_tag="U1087_001194"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HEM4755675.1"
                     /translation="MTKLNRVVVTGYGLTSPIGNTPEEFWDSLVNGKIGIGKITKFDT
                     SEYTVHNAAEIKDFPFDKYFVKKDTNRYDNYSLYALYAAREAVANAKLDTEAVDSDRF
                     GVILSTGIGGILEIEEQVARMNEKGPKRIRPMALPKALPNMAAGNIAMQVGANGVCKC
                     VITACASSNDALGEAFREIKFGFQDVMLAGGAEAAITPFAIGGFQALTAMSTTEDPER
                     ASIPFDKDRNGFVMGEGSAVLVLESLEHAEARGATILAEIVGYGNTCDAYHMTSPHPE
                     GLGAIKAMKLAISEAGLEPADIDYINAHGTSTPANEKGESQAIVSVFGKNTPVSSTKS
                     FTGHLLGAAGAVEAAAVIEAMRHSYAPKTAGTTELSEAIEADVIYGQGRDMEIRHAIS
                     NTFGFGGHNSVIAFKRWEA"
     gene            9422..9898
                     /locus_tag="U1087_001195"
     CDS             9422..9898
                     /locus_tag="U1087_001195"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HEM4755676.1"
                     /translation="MNITEIKDLMSQFDQSSLREFSYSNAGETLHFSKNQQATAVPSP
                     IVKAPLAPVAPASPAPVPAVETSEATPVEVSSSSVAEGAVVESPLVGVAYLSPAPDKP
                     AFVAVGDTVKKGQTLMIIEAMKVMNEVPADRDGVVTEILVVNQDVVEFGQGLVRIK"
     gene            9895..10317
                     /gene="fabZ"
                     /locus_tag="U1087_001196"
     CDS             9895..10317
                     /gene="fabZ"
                     /locus_tag="U1087_001196"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000565430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HEM4755677.1"
                     /translation="MIDILKIKEALPHRYPMLLVDCVLEVSEDEIVALKNVTINEPFF
                     NGHFPDYPVMPGVLIMEALAQTAGVLELSKEENKGKLVFYAGMDKVKFKKQVVPGDQL
                     IMTAKFVKRRGTIAVVEAKAEVDGKLAASGVLTFAIGN"
     gene            10342..11709
                     /locus_tag="U1087_001197"
     CDS             10342..11709
                     /locus_tag="U1087_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HEM4755678.1"
                     /translation="MFEKILIANRGEIAVRIIRAARELGIATVAVYSEADKEALQTML
                     ADEAVCIGPARSTDSYLNMQAVISAAVVTGAQAIHPGFGFLSENSKFATLCEEVGIKF
                     IGPSGTVMDTMGDKINARAEMIKAQVPVIPGSDGEVLTSQEALEIAEKIGYPVMLKAS
                     AGGGGKGIRKVEKAEDLVPAFESASSEAKAAFGNGAMYMERVVYPARHIEVQILADQH
                     GHVIHLGERDCSLQRNNQKVLEEAPSIAIGQTMRDRIGQAAVRAAQSVGYENAGTIEF
                     LLDEAKGEFYFMEMNTRVQVEHPVTEFVTGVDIVKEQIKIAAGQELSVRQEDVKITGH
                     AIECRINAENPAFNFAPSPGKISNLYLPSGGVGLRVDSAVYPGYTIPPYYDSMIAKVI
                     VHGENRFEALMKMQRALYELEIDGVVTNTDFQLDLISDKRVVAGDYDTAYLMEEFLPR
                     YQAEL"
BASE COUNT         3351 a         2237 c         2934 g         3277 t
ORIGIN      
        1 ataaaaatag cttagaattg catcgtcaga aacgtagatt ctaagctatt tttgtttatt
       61 caaattttaa ttggtactca atgaaaatta aaatcagact agctccaatg gagctagaca
      121 ctcatcaaat caagtcaaca acatctgttt tgattttcga agagtatgaa gagggaactg
      181 accgacctcg ttgtgattat tgctcgttaa aaaaagcttc atagagtgcg tgcagggcgc
      241 gtttcttttc ttcggttttg acaacgaaca taacagaaac ttcactggct ccctgtgaaa
      301 tcattgccaa gttgacattt tgtttagaga gggcagtggt agcggtagct gttacaccga
      361 catggctctt catattttca ccaacaatca tgataataga taaaccatgt tcgatttcgg
      421 ccttgtcaac ttccattttc gtattgagtt gacgaaggat ctcttcttcc ttgataggag
      481 tcaattcacg ctcacggact acgatggata aatcgtcaat cccggtcggc atgtgctccc
      541 agcgaatatt gagatcttcg agaatttgca acaccttgcg accaaaacca acttcacggt
      601 tcatcaagta tttggacaag ttaatgctga caaaaccatc gtctgcagca ataccgacaa
      661 taggaactgt ttgctcggta tgtttgtgta caattcgggt accagggtga gttgggttat
      721 tggtgttttt gataaccaat ggaattcgtc cgcgataggc aggaaggagg gcttcatcgt
      781 ggaggacgga gaaacctgca taagctaatt ctcgcatttc acgataggtc aattctttga
      841 ttgaatgtgg atttttaatg atgccaggat gggcagcaaa aataccatcg acatctgtaa
      901 agttttcata gaggtcagcc ttgactccgg cagcaatgat ggaacctgta atatccgatc
      961 cacctcgtga gaaggtacaa atctggttat caacagttac accgaagaat cctggaataa
     1021 tgagtacttc atctgtatca cgaagctctt cgattttgtc ataacttgaa ggcaaaatgc
     1081 gagcatttcc tggttcggag ctgacaataa taccagcttt tttaggatgg acatagcgtg
     1141 caggcaatcc tctgtgggta aaatattcgg caatcaattt ggcattatta tcttcaccag
     1201 ctgctaagaa tgcgtcgtaa aggaattcgt tatcatcaat tggtaggctg gccaaagaga
     1261 tgatgctgtc tgcgattttc ttcatgctgt tagctgtgaa accaagttcg tcaaccattg
     1321 cctgataacg gttgatgatc cattcttgac tggcagtcac atcttttccg ttaacatatt
     1381 ctttataata tttaatcaac gcatcagtaa ctttagtatc ctcggcattg cgttttccag
     1441 gtgcagacac cacaacaaag cgacgttctg aatcagattg aacaatattg aaaacttttt
     1501 ctaactgtcc agctgaagca agtgagcttc ccccaaattt aataactttc attttcatct
     1561 ccttggatat ttttttctat tatagcagaa tgatatgaaa ttgtcagtat gttcagacaa
     1621 atcttgccaa gaattttatc gaaaaacgaa caagagacaa gtatgaaaat ttcagaaaaa
     1681 catttttttc tttcaactgt gttacagtta aaggaatagg aggcgattat ggtaaaagca
     1741 attattttcg acatggatgg tgtacttttt gacacagaaa cattttattt tcaacgtcga
     1801 gtggattttt tagcgacaaa aggtttatcg gttgatcatt tggctccatc tatatttgtc
     1861 ggtggaaggg ctagtcaaat ttggcaacgg attttagggg atgattatga taactgggat
     1921 gtccctgcct tggaagaaga atatcgtgtg tataaagaaa agcgaccaac cccttatgca
     1981 gagaggattt ttcctgaagt taaagcggta ttggagagac taactatcca aggtattcct
     2041 gtagttttgg cttcaaatac tgaccgttca gaaatcgaac gtgctctact agatgctggt
     2101 atacgctctc actttagtca tattttctca gcgatggatt gtgaggctcc aaaaccagat
     2161 cccacagttt atatgaaagc agccagtgca acaggagtag ctaaatcgga cattttagta
     2221 tttgaagata gtgcgaaggg gattgaagcg gctaaaaaag caggtttgac agtttgggct
     2281 attcgagacc agcattatgg aattgatcag tcgaaagcag ataaattggt agacaatctt
     2341 gaagaggcct ttgacttatt gcgattttaa gaaatatgat attgtatcca agtattagtt
     2401 cttggtgaaa aatggtattt ctagctcaga atccagttag agcttccaaa agtattaacg
     2461 tgaaaaaatg aaagttgtaa attaaactta gagcctataa tttacagttc agacttgaat
     2521 attgaggttg ttttttcaaa atacagtcag tatttcccgc aaaaactacc ttgatgagtg
     2581 aaaaagccaa ggcgctttgc gtgtgaatat aggttcttag acacgttatt ttctagcata
     2641 tctaaatttt atattgcgat gatggcctcc atctttttcg gacgtcacac tttccttgct
     2701 agaaaaaagt gacaatttta aaaactgtgt tacaatggaa aacaagaatt tgaagtttga
     2761 tattcaaatc ttttaattat caaactattt tgaaaggagc aagggaatgg actaccaaac
     2821 aattcgttat gaagtaattg attccgtagc gattctaact ttaaacagac cggaagtggc
     2881 aaatggtttt aatattccta tgtgtgaaga aatcttagaa gcaatccgcc ttgcagaagg
     2941 ggatgcctcc gtcaaaattt tacaaattca agcacagggt tccattttct ccgtgggtgg
     3001 agatttagtt gagatgaagc gtgcagtgga tgatgatgat attgcttctt tagtaaaaat
     3061 agcagagctg gtgaatgata tttcgtttgc gatgaagaaa ttgtctaaag tagtcattat
     3121 ggtgacagat ggggcagtgg ctggagccgc ggctaatatg gcagtggcag ctgattttgt
     3181 tattgcctcc agcaagacaa aattcatcca agcctttgta ggcgttggac ttgcgccgga
     3241 tgcggggggg ctctttctac tgagtcgtgc tattggggct aatcgtgcta gtcacttggc
     3301 gatgactgga gagggcttat cagcggataa ggctttagaa tatgggatta tttataaatt
     3361 ggcagagcca gaaaaactag aaaagacagt tgcccaggtc ataaaaaaac tcttgcgagg
     3421 ctcagtaaac tcttatgcag caatcaaaca actgacatgg gaaagccaat ttaaagactg
     3481 ggagtcttat cgccgattag agctggattt gcaagaaaca ttggcatata aagaggattt
     3541 taaagaggga gttcgagcgc atgcagaacg acgtagacca gtgtttacgg gagattaatt
     3601 tttaaattcg taaaaaaatg tttgacaatc aaagttttat ggtttatact ttgactatca
     3661 aagtaaagga ggcctgtttt ggaagatcca aaagtaaatg aatatctaac ggccattttt
     3721 aataatgtgt tggtgattga agaaacaagt ctgcgtggta gccgattcaa tgatatttcg
     3781 attaaggaaa tgcacacgat tgatgtgata ggaagtattg atggagctac tccgagtgat
     3841 gttgctcgga ctttgatggt aaccttgggt actgttacaa ctagcttgaa caatttggaa
     3901 agaaaaggat atgttgagcg tattcgttcg accaaagatc ggcgagttgt tcatctctac
     3961 ctgaccaaaa aaggtcgact ggtctatcgt ttgcatcaac gatttcacaa tgaaatggtg
     4021 aaacagatta cagatggtat ggatgaaaca gagtatcagg taatgaagaa aggactcatg
     4081 aaactctatc acttcttgga ggatttgaaa tgagaaacca tgctaaaatc agtcaggtgg
     4141 cccactatct tccgaagaag attgtgacca atgatgattt ggcccagcaa atggatacca
     4201 gtgatgagtg gattcgtagc cgtacaggta tcggtcaacg acacattgtt actggagaga
     4261 cgacgagtga tttggctagt caagtggcta gaaaattact ggaaaagtct cagctagatg
     4321 ctagtgaaat tgacttcatc atcgtagcaa cgattactcc agatgcttca atgccatcta
     4381 cggcagctat ggttcaagca gcaattggcg cgaaaaacgc ttttgcctat gatctcgttg
     4441 cagcttgttc aggatttgtt tttgcgctat caacagcgga aaaattgctt gcttcaggag
     4501 tctataagag aggacttgtc attggtgcag agaccctatc taggtctgtt gactggtcgg
     4561 atcgatcaac ggctgtttta tttggagatg gtgctggagg agttttgctg gaagcgtgtg
     4621 aacaaccgac ctttttagca gaaatcttgc gaacggatgg cggtcgaggt gctagtctga
     4681 cagcagggat agaccagaaa gagacgccat tctcgacaca aagccgtcag caacccttta
     4741 tccaaatgga gggtagagct atatttgaat ttgctacgag ggatgttacg gcaaccatgg
     4801 cagagctgct agaacaagct gatatgactg tggattgcgt tgattatttc ttgctccatc
     4861 aagccaatat acgtattctg gataagatgg ctcgtaaatt gggagtggcg cgtgaaaaat
     4921 ttccagcaaa tatggataaa tatggcaata ccagcgcagc aagtcttcct attctcttat
     4981 cagaatgtgt agagagcgga atgttgcgat tggatggaag tcaaacagtc cttatggctg
     5041 gtttcggtgg aggcctcaca tggggaactc tactcttaca actttagtta attccttgcc
     5101 ctaggcaaga ttaaaatatt ttattttcca aaaggagaca catatcatgg cagtatttga
     5161 aaaagtacag gaaatcattg ttgaagaatt gggtaaggat gctgaagaag taactcttac
     5221 aacaagcttt gaagatttgg acgcagattc attggatctt ttccaagtta tctctgaaat
     5281 cgaagatgca ttcgacatcc aaatcgacac tgaagaaggt ttgactactg taggcgattt
     5341 ggttgcctac gttgaagaaa aaacaaaata atgactgtta aggaaagtgc tatttagcat
     5401 ttttcttaaa ataaatactt tgataatcaa aacattgaga tatcaaacta ttttttgagt
     5461 gagggggcaa cccttcactt gtttacctaa tgatttgata ttcaaatgat taggtaagca
     5521 agaaaaaaga tgagggaatt atgaagacga aaataataga attgctcgat attaagtatc
     5581 caatttttca aggtggtatg gcttgggtag ctgatggaga tttggctggt gccgtatcta
     5641 atgcaggtgg tctaggaatc atcggcggag gaaatgctcc aaaagaagtc gttaaggcaa
     5701 acattgataa agtcaagtcc atcacagaca agcctttcgg tgtcaatatc atgctcctat
     5761 cgccttttgc agatgacatt gttgacttgg tcatcgaaga aggtgtgaaa gttgtcacca
     5821 caggagcagg aaatccaggg aagtatatgg agcgtctcca tgctgcaggg attacagttg
     5881 ttcctgttgt accaagtgta gcccttgcta aacgcatgga aaaactgggt gtggatgccg
     5941 tcatcgctga agggatggaa gccggaggcc atattggtaa attgaccacc atgaccttgg
     6001 ttcgtcaggt tgttgaagcc gtatctattc ctgttattgc tgctggaggt attgcagatg
     6061 gtgcaggtgc tgcggcagcc tttatgttgg gagcagaagc ggtgcaagtt ggaactcgtt
     6121 ttgtagtagc tacagagtcc aatgcccatc aggcttataa ggaaaaagtt ttaaaagcta
     6181 aggatattga tacaactgta tctgcttcta ttgttggaca tcctgtgaga gccatcaaga
     6241 ataagttgtc atctgcttat gcagctgcag agaaagattt cttggcaggt aaaatttcgg
     6301 cagatgctat tgaagaactt ggtgcaggag cactacgtaa tgcagttgtt gatggtgatg
     6361 taacaaatgg ctccgtgatg gctggtcaaa ttgctggtct ggtttctaaa gaagaatctt
     6421 gtgaagatat tttgaaagac atctattatg gagcagccaa agtgattaga gaagaggcaa
     6481 gccgttgggc ttcggttgga gaataggatg acaaagacag cttttctttt tgcaggtcaa
     6541 gggtctcaga cagtggggat ggcccgcgac ctttacgaat attacccgat agttagagaa
     6601 acgtttgacc aggctagtca gattctgggg tatgacattc gtgacttaat tgacaatcaa
     6661 gaggataaat tacatcagac tcgctatacc cagcctgcga ttttgacaac ttcccttgct
     6721 atttatcgtt tattggcaga aaagaggatt aaacccgaca tggtggctgg tttgtccttg
     6781 ggagaatacg cagccttggt tgcttcaggt gctctggtct tcgaagatgc cattgccctg
     6841 attgccaaac ggggtgagtt tatggagacg gctgcaccag cagggactgg taagatggtc
     6901 gctgtcctta atgcagatgt cagcttgatc gaagaggtct gttcatctgt tacctctggg
     6961 attgtttctc cagccaacta caacacacca gcccaaatcg ttatcggtgg cgaggtggca
     7021 gctgtagatg aggcagtgga agccttgaag gcggcgggtg tcaaacgcat gattcccctc
     7081 aatgtgtcgg ggcctttcca tacggctctc ttgcgtccag cgtcggagca attggctcag
     7141 gccttggagc aggtggaatt ttcggacttc caagtagagt tggtcggtaa tacggaagct
     7201 aaggtcatga aaaaagagga catcaagtcc ctcttgaccc gtcaagtgat ggaaccagtt
     7261 cgtttctatg agtcaatcgc aaccatgcag gaagccggtg tgactaactt tattgaaatt
     7321 ggtccaggta aagtcttatc aggatttgtc aagaaaatcg ataagacggc gcatgttata
     7381 gcaattgaag acatagaggg actacaaata gtattgaata aatcatgagg aggaatcatg
     7441 gaattaacaa ataaaaatgt ttttgtaaca ggttcaagcc gaggaatcgg cttggccatt
     7501 gcccataagt ttgccagtct tggtgccaat gtggtgctga acggtcgtgg tcagctgggg
     7561 caggacttgc tggacagctt ttcaagctac ggtgtcaaag tggtggcgat ttcaggtgat
     7621 atttccagct cggcagatgc caaacgaatg gtagctgagg cagttgaggc tcttggtagc
     7681 gtcgatatct tggtcaataa tgcagggatt accaaagacg gtatggctct tcgtatgaca
     7741 gaagaggatt ttgatacggt tctgaaggta aatcttactg gaacttttaa tatgacgcag
     7801 gctgttttga aaccaatgac aaaggctcgt gagggtgcta ttatcaatct atcaagtgta
     7861 tctggcttga ttggaaatgc tggacaggcc aactattctg cttctaaggc aggtgtgatt
     7921 ggatttacca aagccattgc ccgtgaggtt gctgggcgaa atgttcgtgt caatgcgatt
     7981 gcgccgggct ttatccagtc tgatatgaca gatgttctgt ctgacaagat taaagaagct
     8041 atgactgcac aaattcctat gaaacgcttt ggtgcgacag aagaagtggc agatgtcgct
     8101 gtattcttag ccaagcaaga atatctaact ggacaagtga ttgcggttga cggtggcttg
     8161 accatgcaat aagagaggtt tgaaaatgac aaaactaaat cgtgtagtgg tgacaggcta
     8221 cggtctgaca tcgccaattg gaaatacacc agaagaattc tgggatagct tggtcaatgg
     8281 caagattggt atcggaaaga ttaccaagtt tgacactagt gaatatactg tccataatgc
     8341 agcagaaatc aaggattttc cttttgacaa atactttgta aaaaaagata ctaaccgcta
     8401 cgacaactac tccctctatg ctctctatgc agctcgtgag gcagtagcca atgccaaact
     8461 tgatacagaa gctgtcgaca gtgaccgttt tggtgttatc ttgtcgactg gtatcggtgg
     8521 aattttggaa attgaagagc aggtggctcg gatgaacgaa aaaggtccaa aacggattcg
     8581 tcctatggca cttccaaagg ccttgccaaa catggctgct ggaaatattg ctatgcaggt
     8641 cggtgccaat ggtgtctgca agtgtgttat cacagcctgt gcttcgtcaa atgatgcctt
     8701 aggagaagcc ttccgtgaaa tcaagtttgg cttccaagat gtgatgttgg caggtggagc
     8761 agaagcagcc attactccat ttgcaatcgg tggtttccaa gctttgacag ctatgtcgac
     8821 tactgaggat ccagaacgtg cgtctattcc atttgacaag gaccgcaatg gttttgtcat
     8881 gggagagggt tccgcggttt tagtattgga aagtttggaa catgcagaag cgcgtggggc
     8941 gactatcttg gctgaaatcg ttggttatgg aaatacttgc gatgcttatc acatgacttc
     9001 gccacatcca gaaggtctgg gtgctattaa ggccatgaag ttggccattt cagaagcagg
     9061 tttggagcca gctgatattg actacatcaa tgcccatggc acttcgacac cggctaatga
     9121 aaaaggggaa agccaagcta tcgtatccgt cttcggcaag aacacgccag tttcttctac
     9181 caagtccttc actggtcact tgttgggtgc agcgggtgcc gttgaagcgg cagctgtcat
     9241 tgaggctatg cgtcattctt acgcaccaaa gacagctggt acgacagaat tatctgaagc
     9301 tattgaagcg gatgtcattt atggacaggg gcgtgatatg gaaatccgcc atgccatttc
     9361 aaatacattt ggctttggag gtcacaactc ggtgattgct ttcaaacgtt gggaggctta
     9421 agtgaatatt acagaaataa aggacttgat gagtcagttt gaccagtcaa gtttgcgaga
     9481 attttcatat agcaatgctg gggaaacctt gcatttcagt aaaaaccagc aggcgacagc
     9541 ggttccgagt ccaatcgtaa aagctccgct tgcaccagta gctcctgcaa gcccagcccc
     9601 tgtgccagca gttgaaacca gtgaggcaac tccagtagaa gttagctcaa gctctgtggc
     9661 agagggtgcg gtagtggaaa gtccacttgt tggtgtggcc tatttgtcac cagctcctga
     9721 caagccagcc tttgtagcag ttggtgatac ggtcaaaaaa gggcagaccc tcatgattat
     9781 cgaagccatg aaggtcatga acgaagtgcc tgctgatcgt gatggtgtgg tcacagagat
     9841 tttggtggtc aaccaggatg ttgtagaatt tggacaagga ttggtacgca tcaaatgatt
     9901 gatattttga aaattaaaga ggcactacct catcgctacc ctatgctctt ggtcgattgt
     9961 gtccttgaag tatcggaaga tgagattgtc gccctcaaaa atgtgaccat taacgagccc
    10021 ttcttcaacg ggcatttccc agactatcct gttatgccag gtgttctcat catggaggct
    10081 ttggctcaaa ccgcaggtgt cttggagtta tcaaaggaag aaaacaaggg caagctggtc
    10141 ttttatgccg gcatggacaa ggttaaattt aagaaacaag ttgtacctgg tgaccagttg
    10201 atcatgacag ctaaatttgt caaacgccgt ggaaccattg cggtcgttga ggcaaaggca
    10261 gaggtggacg gaaaactggc tgcgtcgggg gtactaacct ttgccattgg aaattagtat
    10321 ctaaaggaga taggattcat catgtttgag aagattttga ttgccaatcg tggtgagatt
    10381 gcggtgcgga tcattcgtgc ggccagggaa ttagggattg cgaccgtggc tgtctattca
    10441 gaggcggaca aggaagctct ccaaaccatg ttggcagatg aggctgtctg tatcggccca
    10501 gcccgttcga cagactccta tctcaatatg caggcggtca tctcggcggc tgttgtgaca
    10561 ggtgcccagg ctattcaccc aggctttgga tttttgagtg aaaactctaa attcgcaacc
    10621 ctttgtgaag aggttggtat caaatttatc gggccttctg gtacggtcat ggataccatg
    10681 ggcgataaaa tcaatgcacg tgcagagatg attaaggctc aagtgcctgt cattccagga
    10741 tcggacggcg aagttttgac cagccaagaa gctcttgaga ttgctgagaa gattggttac
    10801 cccgtcatgc tcaaggcatc ggcaggtggt ggcggtaagg ggattcggaa ggttgaaaaa
    10861 gccgaagacc tagttccagc cttcgaatcg gcttccagcg aagccaaggc agcctttggc
    10921 aacggagcca tgtacatgga gcgtgtcgtc tatccagccc gccacatcga agtacagatt
    10981 ttggcggacc agcacggtca tgtcatccat ctgggagaac gggattgttc tcttcaacgc
    11041 aacaaccaga aggtcttgga agaagctccg tcgattgcta tcggccagac catgcgggac
    11101 cgtatcggtc aagcagcggt gcgggctgcc caatcagtcg gctatgaaaa tgcgggaacc
    11161 attgagttcc tcttggacga agccaagggc gaattctact tcatggaaat gaatacacgg
    11221 gtgcaggtgg aacatcctgt taccgaattt gtcacgggtg tggacattgt caaggagcaa
    11281 atcaagatcg cggctggtca ggaactcagc gtccgtcaag aagatgtgaa gattacaggt
    11341 catgccattg aatgccgtat caatgctgag aatccagcct ttaactttgc cccaagtcca
    11401 ggtaagattt ccaacctcta cctgccaagt ggtggcgttg gtttgcgtgt agattcagct
    11461 gtttaccctg gctacaccat tccgccttac tatgattcga tgatagccaa ggtcatcgtg
    11521 cacggggaaa atcgttttga agccctgatg aagatgcagc gagccctcta cgaattggaa
    11581 attgacggag tggtgaccaa tacggacttc cagctggact tgatttccga caagcgagtg
    11641 gtggctggtg attatgacac cgcctatctc atggaagaat ttttaccccg ctatcaagca
    11701 gaattatagt cttttagttt acttttagta ctaggaaacg agccacaggc ataactcaat
    11761 gctttcttgt ttctaggcat tgacttgaaa cagtccccc
//
LOCUS       DASFRC010000065        11625 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.065, whole genome shotgun sequence.
ACCESSION   DASFRC010000065 DASFRC010000000
VERSION     DASFRC010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 11625)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11625)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11625
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.065"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..291
                     /locus_tag="U1087_001198"
     CDS             <1..291
                     /locus_tag="U1087_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM4755679.1"
                     /translation="SKQFRISHIGNIFIAVKKAYWGHGLGTILLEEVLHWAEEMDVLK
                     RLELTVQVRNQAAVHLYQKLGFNIEGTQIRGARTDEGEWLDLYYMGKLIGEV"
     gene            288..1481
                     /locus_tag="U1087_001199"
     CDS             288..1481
                     /locus_tag="U1087_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HEM4755680.1"
                     /translation="MTIGKKIFLMSLAIIGLTVGAGLIYGASLLNFSTDAISKTFKQL
                     DGEEKITPIDATEPLTILLMGVDMDQATRGGDWEGGRSDSMILVTVNPKTKETNMMSL
                     TRDIMVEIAEANGESSGTVEKLNHSYSYGQAPMAIATIEKMMDINIDRYIEINMDGLV
                     ELVDAVGGIEVNNTLGFPISISEHEPAYTSIVQPGKQLVNGDQALVYARMRYDDPEGD
                     IGRQRRQREVITAIIKKLLQLDGFTQYKKILTAISNNMRTNIEISPATIPNLLGYKDS
                     ISKLNSYQLRGVDQMVDAIYYQLPTSTHLLEMQNVLKKSIGLEENTDLVTNVKVYEGQ
                     MGLPSPINVYDVYTNLLLLEASPWAESLDPEIGSPSATTTVTTEEQVTDFSTEPVLGD
                     ENGSQ"
     gene            complement(1590..1892)
                     /locus_tag="U1087_001200"
     CDS             complement(1590..1892)
                     /locus_tag="U1087_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HEM4755681.1"
                     /translation="MKLRNIILAVSAATASFLAVTHRDKIAKEVQETKQLLSDIQLNK
                     DNIQEQLAIIQSFQEPLQEMASDLQYKTRVYQQSIAGNLEEIQQILKKYQNENNTP"
     gene            complement(1894..2307)
                     /locus_tag="U1087_001201"
     CDS             complement(1894..2307)
                     /locus_tag="U1087_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEM4755682.1"
                     /translation="MSDCIFCKIISGEIPASKVYEDDQVLAFLDITQATKGHTLVVPK
                     KHYRNVLDMDKEAAATLFSVVPTIARQLKEKLGASGLNIVNNNEEAAGQTVFHTHIHL
                     LPRFNNQDGLSIQFKANDPDFPALAQLAQELYLGE"
     gene            2370..3104
                     /locus_tag="U1087_001202"
     CDS             2370..3104
                     /locus_tag="U1087_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4755683.1"
                     /translation="MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTI
                     KEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIPETPSLYEELTLKEHLEVVAMAY
                     DLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
                     LGLDPVAISDLIALLGEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEE
                     LQSAFGMDGASLNEIYLALTQEGVAG"
     gene            3101..4141
                     /locus_tag="U1087_001203"
     CDS             3101..4141
                     /locus_tag="U1087_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM4755684.1"
                     /translation="MKELFQQRRLDFLNRCSKYLRYVLNDHFVLVLMVLLGFLSLQYR
                     QLLLSFPENPLPIVFVVIAISLLVLVSGRIATYLEEADQIFLLTKEKDILQGLEVAAR
                     CTVLFWSSIQVVVQLVLLPIYLKLGLPVWMIVAGLLTLLVLKCLFVKRQLVAYQSQGV
                     LDWSKAIQDEQKRKQSILRFFALFTTVKGISTTVKPRSYLNGILRLVKSRQTWFYLYL
                     RAFLRSGDYLGLTIRLLLLAILSLFAIEESWLSIGLVLVFHYLLVFQLLGLYKHYDYQ
                     YITQLYPLEKDSKKIGLQNLLRVILYSLLLVELGFALLFSKENTMVVVLLLVGIFLHE
                     IYLPLKLKKLID"
     gene            4191..4985
                     /locus_tag="U1087_001204"
     CDS             4191..4985
                     /locus_tag="U1087_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase family protein"
                     /protein_id="HEM4755685.1"
                     /translation="MQFDTSGLQLQSIAGNSGKAFKGLRSDGTPVFVKYEMPPIVSAL
                     AREQITPPVLSANREVGMGHRVEQEWLNGRTLERQDMTSKQIRQILVRMHYSRILLNQ
                     ALQMNYTYMEPQDLVYRWQEEAPTRLGQNSYLQSICQDLLNNLPRFRQEVATFVHGDL
                     HHSNWVETTSGLVYLTDWETACVTDRMLDVAYILTHYIPRQSWEEWLRAYGYKYNSTV
                     LNKVYWYGQLGYLNQIAKHVESYNVLAANKEIYALRQFRQSFYKEV"
     gene            4982..5620
                     /gene="trmB"
                     /locus_tag="U1087_001205"
     CDS             4982..5620
                     /gene="trmB"
                     /locus_tag="U1087_001205"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001239380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HEM4755686.1"
                     /translation="MRVRNRKGASELLANNPQYVISNPEECKGKWAEIFGNNNPIHIE
                     VGSGKGRFVTGMAAQNPDINYIGIDIQMTVLSYALDRVLEAGLPNIKLLQVDGSSLTN
                     YFAPAEIDQLYLNFSDPWPKKRHEKRRLTYKSFLDTYKEILPEKGEIHFKTDNRGLFE
                     YSLASFSQYGMVLKQVWLDLHADGLEGNVMTEYEEKFSNKGQVIYRVEAQFQ"
     gene            5878..6348
                     /gene="rimP"
                     /locus_tag="U1087_001206"
     CDS             5878..6348
                     /gene="rimP"
                     /locus_tag="U1087_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HEM4755687.1"
                     /translation="MSSIIELVTAAITPAIQTPYELVDVEYGKMGGDYVLSIFVDKEG
                     GISLQDTADLSEKISPILDTIKPDPFPDQYMLEVTSPGLERPLKTADAVEKAVGKYIH
                     VKLYQAIDKIKVFEGTLLSFDGTDLIMEYMDKTRKKEVTIPYQTVAKARLAVKL"
     gene            6421..7563
                     /gene="nusA"
                     /locus_tag="U1087_001207"
     CDS             6421..7563
                     /gene="nusA"
                     /locus_tag="U1087_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HEM4755688.1"
                     /translation="MSKEMLEAFRILEEDMGINKADIIDAVTESLRSAYKRRYGQSES
                     AVIEFDEKKGDFHVFTVREVVDEVFDSRLEISLKDALAISSAYEMGDKIKFQEDPAEF
                     GRVAAQSAKQTIMEKMRKQKRAITFNTYKQHENEIMSGTVERFDNRFIYVNLGTIEAQ
                     LSKQDQIPGEVFQSHDRIEVYVYKVEDNGRGVNVFVSRSHPEMIKRLMEQEIPEVYDG
                     TVEIMSVAREAGDRTKVAVRSHNPNVDAIGTIVGRGGSNIKKITSKFHPARYDAKNDR
                     MIPTEENIDVIEWVADEAEFIYNALAPAEVDQVLFDTEDGKHATVVVPDDKLSLAIGR
                     RGQNVRLAAHLTGFRIDIKSASEYEAFEATQYATDEVVEEVAEEQE"
     gene            7580..7876
                     /locus_tag="U1087_001208"
     CDS             7580..7876
                     /locus_tag="U1087_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006531117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HEM4755689.1"
                     /translation="MAKARKIPLRKSVVSGEIIDKRDLLRIVKNKEGQVFIDPTGKAN
                     GRGAYIKLDNDEASQAKKRRVFDRSFSMEVAEEFYDELIAYVDHKIKRRELGLE"
     gene            7833..8171
                     /locus_tag="U1087_001209"
     CDS             7833..8171
                     /locus_tag="U1087_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016399195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxQ-related RNA-binding protein"
                     /protein_id="HEM4755690.1"
                     /translation="MLIIRSRGENLDSNKRQKILNLLGLAQRAGRLVSGEDLVVEAIQ
                     KGQAKLVFLAEDAAGNLSKKVTDKSHTYQVEVVTVFSTLELSAAVGKARKVLAVTDAG
                     FTKKMRSIME"
     gene            8189..10996
                     /gene="infB"
                     /locus_tag="U1087_001210"
     CDS             8189..10996
                     /gene="infB"
                     /locus_tag="U1087_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002896915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HEM4755691.1"
                     /translation="MSKKRLNEIARELGVSSKEVVAKAQELGFEVKSHASSVDEASAK
                     RLAESFGGQKSEATKVAAKVSQPEKVDETPKVETAKVEKAKETQPVVKEEVAASTVQS
                     APHRPQSRNFKAEREARAKEQAAKRAQGQGKGGQAKSGQDRRDNRQQGQGRSNNERND
                     RRDNRREQGSDKRKDNRFGDRRDNRDNRSGQSARFEQRAAAKPAGPKIDFKARAAALK
                     AEQNAEYARTSEERFRQAQEAKKQPKKPKEIKFEEPVVESKPFVKPAPVASVPEQVAE
                     TTVDTRRKKQARPDKKRDFNGDEEDGPRKQQRNRNSQNQVRNQRTSNWNNNKKNKKGK
                     ANQPAKPVTERKFHELPTEFEYTAGMTVAEIAKRIKREPAEIVKKLFLMGVMATQNQS
                     LDGDTIELLMVDYGIEAKEKVEVDSADIERFFVEEGYLNEEEMTERPPVVTIMGHVDH
                     GKTTLLDTLRNSRVATGEAGGITQHIGAYQIEEAGKKITFLDTPGHAAFTSMRARGAS
                     VTDLTILVVAADDGVMPQTIEAINHSKAANVPIIVAINKIDKPGANPERVIGELAEHG
                     VISTAWGGESEFVEISAKFNQNIDELLETVLLVAEIQELKADPTVRAIGTVIEAHLDK
                     GKGAVATLLVQQGTLNVQDPIVVGNTFGRVRAMTNDLGRRVKTAGPSTPISITGLNEA
                     PMAGDHFAVYEDEKSARAAGEERAKRALLKQRQATQRVSLENLFDTLKAGEVKSVNVI
                     IKADVQGSVEALASSLQKIEVEGVRVNIVHSAVGAINESDITLAEASNALVIGFNVRP
                     TAEARSQAEADDVEVRLHSIIYKVIEEMEDAMKGMLDPEYEEKIIGEAIIRETFKVSK
                     VGTIGGFMVVRGKVTRDSSVRVIRDGVVVFDGKLVSLKRYKDDVKEVGNAQEGGLMIE
                     NYNDLKVDDTIEAYIMEEIKK"
     gene            11152..11505
                     /gene="rbfA"
                     /locus_tag="U1087_001211"
     CDS             11152..11505
                     /gene="rbfA"
                     /locus_tag="U1087_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HEM4755692.1"
                     /translation="MANHFRTDRVGMEIKREVNEILQKKVRDPRVQGVTITDVQMVGD
                     LSMAKVYYTIMSNLASDNQKAQTGLEKATGTIKRELGRKLTLYKIPDLVFEKDQSIEY
                     GNKIDQMLRALDQKD"
BASE COUNT         3546 a         2024 c         2780 g         3275 t
ORIGIN      
        1 tctaagcagt ttcgcattag ccatatcgga aatattttta ttgcagtaaa aaaagcctat
       61 tggggtcacg gtctagggac gattttactg gaggaagtat tgcattgggc agaggaaatg
      121 gatgtattga agcgtttgga attaacggtt caggttcgca atcaggcggc agtacattta
      181 tatcaaaaac taggatttaa cattgaagga acccagatac gtggggctag aacagatgaa
      241 ggagaatggc ttgatcttta ttatatgggc aagttaattg gtgaagtatg acaattggaa
      301 aaaaaatatt cttaatgtct ttggctatta ttggtttaac agtaggtgct ggcttaatat
      361 atggagccag cttgttaaat ttttctacgg atgctatttc gaaaacattt aagcagttag
      421 atggagaaga aaaaatcact ccgattgatg cgacagagcc cctaactatc ctactgatgg
      481 gggtggatat ggaccaagca acccgtggag gagattggga gggtggtcgt agtgattcga
      541 tgattttggt aactgttaat cccaagacta aggaaaccaa tatgatgagc ttgactcgtg
      601 atattatggt tgagattgca gaagcgaatg gggagtcttc aggaacggtt gaaaaactaa
      661 atcattctta tagctacgga caggcaccga tggccattgc cacgatcgaa aagatgatgg
      721 atattaacat tgaccgctat atcgaaataa atatggatgg tctggttgag cttgttgatg
      781 cggttggagg tattgaggta aacaatactc ttggcttccc tatatccatt tcggaacatg
      841 agcctgccta cacctctatt gtccagccgg ggaaacagtt ggtaaatggg gatcaggcgc
      901 tggtttatgc tcggatgcgc tatgatgatc ctgaggggga tattggtcgt cagagacgtc
      961 aacgtgaagt tataacggct attataaaaa aactccttca gttagacggt tttacccagt
     1021 ataagaagat tctgactgcc atttctaata atatgcgaac caacattgag attagtcctg
     1081 cgacaattcc aaatctcttg gggtacaagg actctatctc caagttgaat tcctatcagt
     1141 tgcgcggtgt ggatcaaatg gttgatgcaa tctattatca attaccaacc agtacacatc
     1201 tattggaaat gcaaaatgtt ctgaaaaaat ctatcggctt agaagaaaat accgacttag
     1261 tcacaaacgt gaaggtctac gaaggacaga tgggattgcc aagtccaata aatgtttatg
     1321 atgtatatac aaatctcttg ctgttagaag caagtccatg ggcagaaagc ttggatccag
     1381 aaatagggag tccatcggct actacgactg tgacaacaga agagcaggta accgattttt
     1441 caacagagcc agtactcggt gatgaaaacg ggtcgcaata atgtagtcat tcagtttttc
     1501 ttttattact ttgacgagcg agtataaaag cctataaaaa tagaggttgt ttgcaacctc
     1561 tatttttata tatttggaaa ttccctatgt cagggagtgt tattctcatt ctggtatttt
     1621 ttgagaatct gttggatttc ttccaagttt cctgcaatac tttgctgata gactcgagtc
     1681 ttatattgta agtcagaagc catttcctgc aagggttctt gaaaactttg gataatggca
     1741 agttgttcct gaatattgtc cttgttcagt tgaatatctg atagaagttg tttggtttcc
     1801 tgtacttctt tagcgatttt atcccgatgc gtgactgcaa ggaagctggc ggtagcggcg
     1861 cttacggcta aaatgatatt acgaagtttc atattattct cctagataga gctcttgtgc
     1921 cagttgagcc agggctggga agtcagggtc gttggcttta aattgaatgc tcaatccatc
     1981 ttgattgtta aagcgtggta agagatggat gtgtgtatga aagacggttt gcccagcggc
     2041 ctcctcgtta ttattaacga tgtttagacc actagctcca agtttttctt ttaactgacg
     2101 agcgatggtt ggcacaacag aaaagagtgt ggctgcagct tctttatcca tgtcaagcac
     2161 gtttcggtag tgttttttag ggacaaccaa tgtgtgtcct tttgtggcct gagtgatgtc
     2221 taaaaaggct aatacttggt catcttcata gacttttgaa gctggtattt ctccagagat
     2281 aattttgcaa aaaatacaat ccgacataat ggcaacctct ttctgggatt tttgttataa
     2341 taattatatc aaattgtagg aagaaatgta tgttagaagt aaaaaatgta actggaggat
     2401 atgtcaatat cccagttttg aaagatgtat cttttaccgt tgaggatggt caattagttg
     2461 gtctaattgg tttaaatggt gcagggaaat caacgactat taaggaaatt atcggtcttt
     2521 tgacccccta tcaaggacag attgcaattg acggcctaac tttgctacaa ggggctgaaa
     2581 attatcggaa gaagattggg tttatccctg aaacaccaag tttgtatgaa gaactaaccc
     2641 tcaaagagca cttggaagtg gtagcaatgg cctatgattt atcctgggag caagcttggg
     2701 gacgtgttga gcacttgtta aaactgtttc gcttggatga gaaattggac tggtttcctg
     2761 tcaatttttc aaagggaatg aagcagaagg tcatgattat ttgtgctttt atggtggagc
     2821 cgagtctatt gattgttgat gagccttttc tgggattaga ccctgtggct atctctgatt
     2881 taatcgctct tttgggggaa gaaaaatcta agggcacttc aatcctcatg tccactcacg
     2941 ttcttgactc agctgagaaa atgtgcgact cttttgtgat tttacatcag ggacaggtcc
     3001 gtgcaactgg aaatttggag gagctacaaa gcgcatttgg tatggatggt gcaagtctga
     3061 atgaaattta tctggccttg acgcaagaag gagtggctgg atgaaagaat tgtttcaaca
     3121 acgccgacta gattttttaa atcgttgttc caagtatctg cgctatgttc tgaatgacca
     3181 ttttgttttg gttctcatgg ttttattagg ctttttgagt ttgcaatacc gtcaattatt
     3241 gttgtcgttc cctgagaatc cgttgccgat tgtttttgtg gttattgcaa tcagtctact
     3301 ggtactagtg tccggaagaa ttgcgactta tctagaagaa gctgatcaaa tcttcctatt
     3361 gaccaaggaa aaagacattc tgcaaggact cgaggttgca gccagatgca cggtcttgtt
     3421 ttggtcctct atacaggtgg tggttcagct tgttttgtta ccaatctatt tgaaactggg
     3481 tttaccggtg tggatgattg tagctggtct tcttactttg ttggttttaa aatgtctttt
     3541 tgtcaagcgc caattagtgg cttatcagtc acagggagta ttggactggt ctaaggctat
     3601 tcaagatgaa caaaaaagga aacagtctat tttacgtttc tttgccttat ttacgacggt
     3661 taaaggaatc agtacgactg ttaaaccgag aagctatctc aatggaatct tgcgtctcgt
     3721 caagtcgaga cagacttggt tttatctcta cttacgggct ttcttgcgtt caggagacta
     3781 cttgggcttg acgatacgtc tactgttgtt ggcgattttg tccctatttg ccattgaaga
     3841 atcgtggtta tccatcggcc tagttttagt ctttcattat ttgcttgtct ttcagttgtt
     3901 ggggctttac aagcattatg attatcaata tataacacaa ctgtatcctc tggagaaaga
     3961 ttccaagaaa attggtcttc agaatttgct tagagtgatt ttatatagtc tattactggt
     4021 ggaattgggc tttgctctgc tattttctaa agagaatacg atggtagtcg tcttacttct
     4081 cgtggggatt ttcttgcatg aaatatattt gcctctaaaa ttaaaaaaat tgattgacta
     4141 aatagacgaa aattagtaaa atagtaagga atttttaaag gaggaaaggc atgcagtttg
     4201 ataccagtgg gctacaatta cagtctattg caggaaatag tggcaaagcg tttaaaggcc
     4261 tacggtcaga cggaacgcca gtctttgtga agtatgagat gcctccgata gtgtctgctc
     4321 ttgcgcgtga gcaaattaca ccacccgttt tgtcagcaaa tcgtgaagta ggaatggggc
     4381 atcgtgtaga gcaggagtgg ttgaatggtc gtaccttgga gcgtcaagat atgactagta
     4441 aacagattcg tcaaatactg gtgagaatgc actattctcg cattttgctc aatcaggctt
     4501 tgcagatgaa ttatacctat atggaacctc aggatttggt ttatcgttgg caagaagagg
     4561 cgccaactag attgggacag aattcttatc tgcaatctat ctgtcaagat ttattgaata
     4621 atctaccaag attccgtcaa gaggtggcaa catttgttca cggagatttg catcatagta
     4681 actgggtaga aacgacgtct ggtttggtgt atttgacaga ttgggagacc gcttgtgtaa
     4741 cggatcggat gttggatgtt gcctatattt tgacgcatta tattcctcgt cagtcctggg
     4801 aagagtggct tcgggcttat ggctacaaat ataacagcac agtattaaat aaggtttatt
     4861 ggtatggcca gcttggctat ctaaaccaaa tagctaagca tgtagaaagc tacaatgttt
     4921 tggctgcaaa taaagaaatt tatgctctac ggcaattccg tcagagtttc tataaggaag
     4981 tatgagagtt agaaatcgta agggagcgag tgagcttcta gcaaacaatc cccagtatgt
     5041 tatctccaat ccagaggagt gtaaggggaa atgggcagag atttttggaa acaataatcc
     5101 tatccacata gaagttggtt ctggtaaagg tcgctttgtc actggtatgg ctgcgcaaaa
     5161 tccagatatt aactatattg gtattgatat tcagatgacc gtgttaagct atgccttgga
     5221 tcgtgtgctt gaagctggct taccaaatat aaaattattg caggtggatg gttcgagttt
     5281 gaccaactat tttgcaccgg cagaaataga tcagctttat ctgaattttt cagatccatg
     5341 gcctaagaaa cgtcatgaga aacgccgttt gacctacaag tcattcttgg atacctacaa
     5401 ggaaatccta cctgagaagg gagaaatcca cttcaaaaca gataatcgtg gtctgtttga
     5461 gtatagcctg gctagttttt ctcaatatgg catggtcttg aagcaagttt ggctagattt
     5521 gcatgctgat ggtttggaag gcaacgttat gacagagtat gaggagaaat tctcaaacaa
     5581 gggtcaagtt atctatcgtg tggaagcaca gtttcaataa ttcccttagt ggaaaatgag
     5641 gagaggtcta acagagacct ttttccttta caaataggga tagatatgat agaataatgg
     5701 aagtgaataa tgagaaaagg ggttggcgtc agtcaaccct ttccctgtac acggatttct
     5761 gtatatagaa tgaatgatag tacaagggag tttactgtca aaggaaatag agagtcctgg
     5821 atagtgcgaa ctatttgagt aatgtatttc tagcgactgt aaaaatagga ggtgtttatg
     5881 tcatcaatta ttgaattggt cacagcagca attacccccg ctattcaaac tccttacgag
     5941 ttggtagatg tggaatatgg taaaatgggc ggtgactatg tcctatcgat ttttgtcgat
     6001 aaggagggtg gaatttccct tcaagatacg gcagatttat ccgaaaagat cagtccgatt
     6061 ttggacacta tcaaaccaga cccatttcca gaccaataca tgctggaggt aacaagtcca
     6121 ggtttggaac gtcctttaaa aacggcagat gctgttgaga aggcggttgg aaagtacatc
     6181 catgtcaagc tctatcaggc aattgataaa atcaaggttt ttgaaggaac gttgctctcc
     6241 tttgatggaa cagacctgat tatggagtat atggataaaa ctcgtaagaa ggaagtgact
     6301 attccttacc agacggtggc taaggcccgt ttggctgtta agttataatg ctctttcatg
     6361 agtattttaa aagatattag actttaagaa aggacctttt gagcgcaaaa ggaaaacaac
     6421 atgagtaaag aaatgctaga agccttccgt attttagagg aagacatggg tattaacaaa
     6481 gcggatatca ttgatgcagt tacagagtcg cttcgttcag cttataaacg ccgttatggt
     6541 caatcagaat cagcagtgat tgaatttgac gagaaaaaag gcgatttcca tgtatttact
     6601 gttcgtgaag tagtagatga agtatttgat agccgactag aaattagtct aaaagatgcc
     6661 ttggctattt catcagctta tgaaatgggt gacaaaatta aattccaaga agacccagcg
     6721 gaatttggac gtgtagctgc tcaatcagct aaacagacca tcatggaaaa gatgcgcaaa
     6781 caaaagcgtg ccattacctt caatacctac aagcaacatg aaaatgagat tatgtcaggt
     6841 acggtagagc gttttgataa tcgctttatc tatgtcaacc ttggtacgat tgaagcacaa
     6901 ttgtcaaaac aagaccaaat tcctggtgag gttttccaat ctcatgatcg catcgaagtc
     6961 tatgtctaca aggtagaaga caatggtcgt ggtgttaacg tatttgtcag ccgtagccat
     7021 ccagaaatga tcaaacgtct tatggaacag gaaattccag aagtatacga tggaacagtt
     7081 gaaatcatga gtgttgcccg tgaagctgga gatcgtacga aagtggctgt tcgtagccat
     7141 aatccaaacg tagatgccat cggtacgatc gttggtcgtg gtggttcaaa tatcaagaaa
     7201 atcaccagca agttccaccc agctcgttat gatgctaaga atgaccgtat gattcctact
     7261 gaggaaaata ttgacgttat cgagtgggta gcagatgaag cggaatttat ctacaatgct
     7321 ctcgctcctg ccgaagttga ccaagtattg tttgacacgg aagatggaaa acatgctaca
     7381 gtcgttgtac cagatgataa attgtcattg gcaattggtc gtcgcggtca aaacgttcgt
     7441 ttggcagcac atttgacagg attccgtatc gacatcaagt cagcatcgga gtatgaagct
     7501 tttgaagcaa ctcaatatgc aacagacgaa gttgtagaag aagtcgcaga agaacaagaa
     7561 taaggcaaaa ggagcaacca tggcaaaagc tagaaaaata cccttgcgca agtctgtggt
     7621 gtccggtgaa atcatcgaca aacgggattt gctccgtatt gtaaaaaata aagaaggtca
     7681 agtatttatc gatccaacag gcaaggcaaa tggtcgtgga gcttatatca agcttgacaa
     7741 tgatgaggca agccaagcta agaaacgtcg tgtcttcgat cgttccttta gtatggaagt
     7801 ggccgaagaa ttttacgatg aattaattgc ctatgttgat cataagatca agaggagaga
     7861 acttggactc gaataagaga cagaaaatct taaatttatt aggtttggcc cagcgagctg
     7921 gtcgcctggt ttcgggtgag gacctggttg ttgaagctat tcaaaaaggg caggcaaagt
     7981 tggtgttttt agccgaagat gctgctggaa atttaagtaa aaaagtaaca gataaaagtc
     8041 atacctatca agtagaagtt gtaacagtgt tttcaacact ggaattgagt gcagctgtcg
     8101 gcaaggctag aaaagttctt gcagtgacag acgctggatt tacaaagaag atgaggtcta
     8161 ttatggaata gaacaggagg acaaggcatt gtctaagaag agattgaatg aaatagcccg
     8221 tgaattaggc gtaagcagta aggaagttgt tgctaaggct caagaattgg gttttgaagt
     8281 taaaagtcat gcttcaagcg tagatgaagc aagtgctaaa cgccttgcag aaagctttgg
     8341 gggacaaaaa tcagaggcaa ctaaagttgc ggcaaaagtt agccagcctg aaaaggttga
     8401 tgaaactcca aaagtggaaa cagctaaggt agaaaaagct aaggaaacac agccagtagt
     8461 aaaagaagaa gttgcggcaa gtacagtaca atcagctcca catcgtccac aaagtcgaaa
     8521 ctttaaggca gaacgtgagg cgcgtgccaa agagcaggct gctaagcgag ctcagggtca
     8581 aggaaaaggt ggtcaagcta aatctggtca ggaccgtcgt gacaaccgtc aacaaggtca
     8641 gggacgttca aacaatgagc gaaatgatcg ccgcgataat agacgtgaac agggttcaga
     8701 taaacgaaag gacaatcgtt ttggggaccg tcgcgataat cgtgataacc gttcaggtca
     8761 gtcagctcgc tttgaacaaa gagcggctgc aaaaccagca ggacctaaaa ttgacttcaa
     8821 agcgcgtgct gctgctttga aagcagaaca aaatgcggag tatgctcgta ccagtgaaga
     8881 acgttttcgt caggctcagg aagctaaaaa gcaacctaag aagccaaaag aaattaagtt
     8941 tgaagaaccg gttgtggaaa gcaaaccatt tgtgaagcct gcacctgttg catcggtacc
     9001 agagcaagtt gcagaaacta ctgtagatac ccgtcgtaag aaacaagctc gaccagataa
     9061 aaaacgtgac tttaatggtg acgaagaaga tggtccacgg aaacaacaaa gaaatcgaaa
     9121 tagtcaaaat caagtgagaa atcaaagaac aagtaactgg aataacaata agaaaaataa
     9181 aaaaggcaag gcaaaccaac ctgccaaacc tgtcacagaa cgcaagttcc acgaattgcc
     9241 aactgaattt gaatatactg ctggcatgac cgtcgcagaa attgcaaaac ggatcaaacg
     9301 tgaacctgct gaaattgtga aaaaactctt ccttatggga gttatggcga ctcaaaacca
     9361 atctttggat ggagatacta tcgaactcct catggttgat tatggtattg aagcgaaaga
     9421 aaaggtagag gtcgatagcg cagatattga gcgtttcttc gtagaagagg gttacctcaa
     9481 tgaagaagag atgacagaac gcccacctgt tgtgactatc atgggacacg ttgaccatgg
     9541 taaaacaacc ttgttggata ccctacgtaa ttctcgtgtt gctactgggg aagctggtgg
     9601 tatcacacag catatcggtg cctaccaaat tgaggaagct ggtaagaaaa ttaccttctt
     9661 ggatactcca ggacacgcgg cctttacttc tatgcgtgcc cgtggtgcat ctgttaccga
     9721 tttgaccatc ctagtcgttg cagcagatga tggtgtcatg ccacaaacga ttgaggctat
     9781 caaccactca aaagcagcta atgtgccgat cattgtagct atcaacaaga ttgacaagcc
     9841 aggtgcaaac ccagagcgtg tcatcggtga attggctgag cacggtgtta tctcaaccgc
     9901 ttggggtgga gaatctgaat ttgtagaaat ctcagctaag tttaaccaaa acattgatga
     9961 attgttggaa actgttcttt tggtcgctga aatccaagaa ctgaaggcag acccaactgt
    10021 tcgtgcaatt ggtacagtta tcgaagcgca tttggataaa gggaaaggtg cggttgcaac
    10081 cctcctcgtt caacaaggga cacttaatgt tcaagaccca atcgttgtcg gaaatacctt
    10141 cggacgtgtt cgggccatga caaacgacct tggtcgtcgt gttaaaactg ctggtccatc
    10201 tacaccgata tctattactg gtttgaacga agcgcctatg gcaggcgatc attttgcagt
    10261 ttacgaggat gagaaatcag ctcgtgcagc aggtgaagaa cgtgctaaac gtgctcttct
    10321 taaacagcgt caagcaacgc aacgagttag tcttgaaaac ctctttgata cccttaaagc
    10381 aggtgaggtt aagtcagtta atgtgattat caaggccgac gtacaaggtt ctgttgaagc
    10441 tcttgcatca tcgcttcaaa agattgaagt cgagggagta cgtgtcaata tcgtccactc
    10501 tgcagttggt gctatcaatg aatcagatat tactcttgcg gaagcttcaa atgctcttgt
    10561 gattggtttc aacgttcgtc caacagctga agcgcgtagc caagctgaag cagatgatgt
    10621 tgaagtacgt cttcacagca tcatttacaa ggttatcgaa gagatggaag atgccatgaa
    10681 aggtatgctt gatccagaat atgaagaaaa aatcattggt gaggcaatca ttcgtgaaac
    10741 cttcaaggta tccaaagttg gaacgatcgg tggtttcatg gtcgtacgtg gtaaggttac
    10801 ccgtgattca agtgttcgag ttatccgtga tggtgttgta gtatttgatg gtaaactagt
    10861 tagtttgaaa cgctataaag atgacgtgaa agaagttggt aatgcccaag agggtggttt
    10921 gatgattgag aactacaacg acttgaaagt tgatgatacc attgaagctt acatcatgga
    10981 agaaatcaaa aaataatatt ttctcattgt caaaatcata gacaagtgat tttgtcgagg
    11041 aagtgataat ttaatagatt ttagtagatt ttaaagcaat agtttttaat ctacttggat
    11101 tattcaagct ggggaaactc agcttttcta tcatctaaga aaggaaagaa tatggcgaat
    11161 cattttcgta cagaccgtgt cgggatggaa atcaagcgcg aagtcaatga gattttacaa
    11221 aagaaagttc gtgatccacg tgtgcaggga gtgaccatta cagatgttca gatggtcggc
    11281 gatttgtcaa tggccaaggt ttactacaca atcatgagta atttggcatc cgataatcaa
    11341 aaagcacaaa cgggtcttga aaaagcgacg gggaccatta agagagaact tggtcgtaag
    11401 ttaactcttt ataaaattcc ggatttagtc tttgaaaaag accaatcaat tgagtacggc
    11461 aataaaattg accaaatgtt gcgtgctctt gatcagaaag attaacaaca aaagtcggat
    11521 ggaaacattc ggctttttct ggctcggatg ctttgttcat atatggtggc gtttacaagc
    11581 tctcggaaag atgttatact aatactcaat gaaaatcaaa agtag
//
LOCUS       DASFRC010000066        11590 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.066, whole genome shotgun sequence.
ACCESSION   DASFRC010000066 DASFRC010000000
VERSION     DASFRC010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 11590)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11590)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11590
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.066"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..664)
                     /locus_tag="U1087_001212"
     CDS             complement(<1..664)
                     /locus_tag="U1087_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HEM4755693.1"
                     /translation="MPNYTIGILGLGVFGTTIAKTLHNYDCNIIAIDNHEQRINHLEP
                     ILTRGIVGDITDRSLLRAAGIGNCDAVVVATGENLESSVLAVMHSKVLGVPMVIVKVK
                     GTTAKEVLLRVGADKVISPERETGISLAKQLLHRDTTSLFELEGNVSIVEFHPPVKWI
                     GKTLGELKLRQHYKLNIIGYRSGENQELNIQLTPDYVFKSDELILAVTDHNTVDHFEE
                     LTN"
     gene            complement(676..2025)
                     /locus_tag="U1087_001213"
     CDS             complement(676..2025)
                     /locus_tag="U1087_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HEM4755694.1"
                     /translation="MSPFRIKLSPSQRIIISFLFVILTGSILLSLPISQISTSTASYW
                     DHLFTSVSMVCVTGLFTKAVAETYSTFGQIICMMLIQIGGLSLIGFIGLFALRGGRKM
                     NFINMATLQEALNRSDTKYFRNFLKSAFGFTLAVEAFGALLLSFHFVPEFGWARGLFT
                     SIFVAISAFCNAGFDNFGATSIMRYVDNPLINITLASLIIMGGLGFSVWFDLQTQIGQ
                     KRSLRKLGFHTKIVLGLAAIILTLGTLTTLLTEWNNPSTIGQLSFGHKLLASFFQTVT
                     MRTAGFASIDYTKAEPITLLLYIFQMMLGGAPGGTAGGIKITAFLTLVLYARSEILGL
                     PHTNFMGRTIDNLSIRKAFATFSVFLLMFIIGLFALALTDDRQPLLFLMFEVMSALAT
                     VGVTANLTPSLTMAGQAVIMALMFFGRIGPLSILASLSVRKLSKTESLQYAKSSMLV"
     gene            complement(2289..2828)
                     /locus_tag="U1087_001214"
     CDS             complement(2289..2828)
                     /locus_tag="U1087_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gx transporter family protein"
                     /protein_id="HEM4755695.1"
                     /translation="MNSKRQTLNFITMLAAQAVVISLIERLITPPFAFAPGAKLGLGN
                     LISLIAIFTLPTKDSLKVVALRLLISTFLGGTFSTFLYGFAGTTLSYVGMLSAKQLGP
                     NRVSPIGISILGGMLHNLGQLLVFATIARSFYVLNYLPILAFTGILSGLLVGLAATYL
                     LQKVGPLRHYHQLVLAEWK"
     gene            3011..4903
                     /locus_tag="U1087_001215"
     CDS             3011..4903
                     /locus_tag="U1087_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM4755696.1"
                     /translation="MTKNIVIVGAGYAGIAAARLLGKTFKKDQDVTVTLIDKNSFHTY
                     MTELHEVAAGRVEANAIKYDLQRIFKKYPKVQLVTDKVVEIDYDKKQVVAEHQTLDFD
                     YLLLAMGGEANDFGVKGVKEHGFTLWSIEAAERLHDHMIDACYQAMREHDEAKRRALL
                     TFTVIGAGFTGIEMIGELIDWVPILAREFKLDPKEFSLKVVEATPNILAMVTEKEQVK
                     ARKYLEKKGVELVLGDGVASVQEDSLTLSSGRQIPTYTSIWTAGVQANTDASEFGIEK
                     ARAGRLVANEFMEAKGKENVYVAGDLVYFEESEGKPTPQIVQAAEQTGHTAASNIIAA
                     IKGGEKHSYKGKYDGFMVSIGARYGVAFLMDKYHMSGFMAMAVKHMVNLLYFFTIRSF
                     FYMGSYVRHEFFDIQNKRNIFGGHTSGKGNLLWSVPMRVLYGSVWLYEGIKKAFGLFG
                     TTSWFGDQVVFPFPWLADPVSGASAAEAVSSASQAATAAAEAAEPIFGLSYAYGEAPM
                     AVLDKMPDWFATIMEFMMPNQEVALFMQKFMTVAEIGIGLALIAGAFVWIVSAATVAL
                     VVMFSLSGMFYWVNIWFIPAAISLMNGAGRAFGLDYWIMPWLGRFLDKKIYGKPKHIY
                     RIKDKK"
     gene            4922..5911
                     /locus_tag="U1087_001216"
     CDS             4922..5911
                     /locus_tag="U1087_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEM4755697.1"
                     /translation="MVHQIWNTYPEIERGLEEVKSIILSEMMVLHPAVTSKIVEYVEA
                     PGKYLRAGLCLLFAQMTEGKISRSKLYFAAHLEVLHLATLIHDDVIDGADKRRGVTAA
                     HQQFSNRIAIYTGDYLLAYSSRLFGKGLRLLEVSRDDLDLGNDKLMETILRGELSQLL
                     NQFDANMTMKAYLKQIQGKTAFLFGLACQLGSFVPGQSRKDSSMAFRSGQALGMAFQL
                     RDDLIDYQLDVAESGKPRLQDIQNGIYTAPLLFAMREDKSIQQQLRAYIQSPTAEGLE
                     ILTDRIFATHAIAKTEKLIVSYLEKMMNFVDRIPQLSTASMQNLVAIVFSHYF"
     gene            5990..6469
                     /locus_tag="U1087_001217"
     CDS             5990..6469
                     /locus_tag="U1087_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein"
                     /protein_id="HEM4755698.1"
                     /translation="MKTTKVVLKSLVVLGAVFALAACGSKQESASTSSSTKETVVLKD
                     GTYKAESSKDDYGYKIVHTLTVKDGKISESKFDYEAEDGSLKSANEEYNKKMKDKAGV
                     SAGEAIEQLNAALVEKQELSAVEVVSGATHTSEDFKKSTEALLAAAAEGKTETVKLD"
     gene            6547..7596
                     /locus_tag="U1087_001218"
     CDS             6547..7596
                     /locus_tag="U1087_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HEM4755699.1"
                     /translation="MKKIASLLFVGLLMVLLVACGGKQNESLSVVKTPLTRSESLLHT
                     VVQLSIYHENQEEAMDEAVSYIKEMESLLSTNLEGADVYRINQAAGKEAVKVDERTFE
                     VIETAIDMSKESQGLFDISIGAVSNLWKIGDEDARKPSDEEIKAALPFINYKDITLDK
                     EKKTVFIKEGMTLELGAISKGYIADKVRELFASKGITTAIINLGGNVVVMGDSPTTQN
                     GWNVGVQDPDQVRGSTVGSVPGTHDSVVTSGIYERYLEVDGVKYHHILDPKTGYPVEN
                     DISGVTVFSKTSIQGDALSTTLFLLGVEKGLDFINQIDGVEAVFIDKEQGVHLSDGLK
                     ESFELTNEEYHLVNE"
     gene            7589..8545
                     /gene="menA"
                     /locus_tag="U1087_001219"
     CDS             7589..8545
                     /gene="menA"
                     /locus_tag="U1087_001219"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HEM4755700.1"
                     /translation="MNKSTKGLSLPVFLEFVEMKTKVASVFPMTLGILWSLYRYQAFN
                     WLNTLLFIIAVLSFDMCTTAINNSMDYHKAKDEAYRQESNVIGKFSLDFRQMIGIVLA
                     LLIFSLLVSLLLVWRTSWLLLPMGALCFLIGIFYTFGPIPLSRMPLGEVFSGVTMGFG
                     IFFLAVFIQQPDLLLTSQVSGQWMTLQFSWIKIIEIIFMSIPLVTLIANIMLANNTCD
                     LEEDIRNHRYTLVYYIGKKNALKLYFVLASLPWLLWIIYCLIGFLPIWALAGLIGVWP
                     AYKSLETFLKKQVKRETFIEAVKSFVLFALLYVVILALALIF"
     gene            complement(8853..9281)
                     /locus_tag="U1087_001220"
     CDS             complement(8853..9281)
                     /locus_tag="U1087_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NusG domain II-containing protein"
                     /protein_id="HEM4755701.1"
                     /translation="MTFKSILKQLKLFDYILIGFTLVLSFLPAIFTYTHLTTDTNEAK
                     TIAYVRINGEVVDQFELSKDTPHQEKTYYPNEGQYNIIEVDGERIRVKEDNSPDQIAV
                     MTSWISQPGQLSVCLPHNLLIEIKSVGGESTDEEELILPL"
     gene            complement(9334..9681)
                     /locus_tag="U1087_001221"
     CDS             complement(9334..9681)
                     /locus_tag="U1087_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755702.1"
                     /translation="MNVDKPKFILTLIVLSYTAICSLYIHSYLTGDNPPIFILLFTML
                     PILNSDWQTSGPEANAFQKAIYLYHKPLLWFLFAGFALTFSIVFFAGKIQPLHAGFWG
                     MLAILLFFRQLKK"
     gene            complement(9671..10015)
                     /locus_tag="U1087_001222"
     CDS             complement(9671..10015)
                     /locus_tag="U1087_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM4755703.1"
                     /translation="MNKPFTPKQTCRFFVLFYALFSAFFIYSYMVNEPINGSFLLMLP
                     TIQIIKSYQTAEEKRYFIIQAIFALFAMTLTYSVGIWLGHVKPLILILPAGFAAAILY
                     RIYFKKEKPDER"
     gene            complement(10028..11097)
                     /locus_tag="U1087_001223"
                     /pseudo
     CDS             complement(10028..11097)
                     /locus_tag="U1087_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027658.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3278 domain-containing protein"
     gene            complement(11108..11308)
                     /locus_tag="U1087_001224"
     CDS             complement(11108..11308)
                     /locus_tag="U1087_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755704.1"
                     /translation="MKKNIRQALISTLIFIPLFVLFQLWGNSGAEILHTISQAKFWLQ
                     LLIAGTIYFLGFVYILPLFDQK"
     gene            complement(11324..11512)
                     /locus_tag="U1087_001225"
     CDS             complement(11324..11512)
                     /locus_tag="U1087_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM4755705.1"
                     /translation="MNRVKDYRLLLGISQLELAKAIGVSRQTINMIENNKYNPSLDLC
                     INLAKALQTDLNSLFWNE"
BASE COUNT         3433 a         2095 c         2722 g         3340 t
ORIGIN      
        1 aatttgtcag ttcttcaaaa tgatcgacag tgttatggtc tgttactgct aagatgagtt
       61 cgtcagattt gaaaacatag tcaggagtca gttggatgtt taattcctga ttttcgccac
      121 ttcggtaacc gatgatattg agtttataat gttggcggag ttttaattcg ccgagtgttt
      181 ttccaatcca ttttactggc gggtgaaact cgacaatgga aacattgcct tcgagctcaa
      241 agaggctggt tgtatcgcgg tggagtagtt gttttgctag agaaatacct gtttcacgtt
      301 caggagaaat aaccttatcg gcaccgacac gaagaaggac ttctttcgca gttgttcctt
      361 tgactttgac aatgaccata ggaacaccta gaactttgct atgcatgaca gccagaacac
      421 tggattccaa gttttcgcca gtagctacaa caacagcatc gcagttaccg attcctgctg
      481 cacgtaggag cgagcgatcg gtgatgtctc cgacaatacc gcgtgtgaga ataggttcta
      541 gatgattgat acgttgctca tgattatcga tagcaatgat attgcaatcg taattgtgta
      601 atgtttttgc aatggtagta ccaaaaactc ccaggccgag aattccgata gtatagtttg
      661 gcatgatttc tccttttaaa caagcataga tgattttgcg tattgaagac tttcggtttt
      721 agataatttt cgaacagaaa ggcttgcgag aatagaaagt ggaccgatac ggccgaagaa
      781 catgagcgcc ataatgactg cttgaccggc catggttagg cttggagtca gatttgccgt
      841 aacacctaca gtggctaatg ctgacatgac ctcgaacatt aaaaatagaa gtggttgtcg
      901 gtcatctgtt agggcaagtg cgaagagccc tatgataaac ataagtagga agactgagaa
      961 tgtcgcaaaa gctttgcgga tgctgaggtt atcgatggtt cgtcccataa agttggtatg
     1021 agggagaccg agaatctcgc tacgagcata gagcactaag gttaggaagg cggttatttt
     1081 aataccgccg gctgttccac ctggggctcc gccaagcatc atctgaaaga tatagagcaa
     1141 gagggtgatt ggttcagcct tcgtatagtc gatgctggca aaaccagcgg ttctcatggt
     1201 gaccgtctgg aaaaagctgg ctaataattt atggccaaat gatagttgcc cgatagtaga
     1261 agggttattc cattcagtga gtaaggttgt cagagttccg agggttagta taatggctgc
     1321 taggcctaga acaatctttg tatggaaccc tagttttcgt aggctacgtt tttgcccgat
     1381 ttgtgtttga aggtcaaacc aaaccgagaa tccaagacct cccataataa tgagactggc
     1441 taatgttatg ttgattagag gattatccac atagcgcatg atgctagttg cgccaaaatt
     1501 atcaaaacca gcattacaaa aggctgatat agctacgaaa atggaggtaa ataaacctct
     1561 cgcccatcca aattcaggca caaaatgaaa ggacagtaaa agggctccaa aggcttcgac
     1621 cgccaaggta aaaccaaaag ctgatttgag gaagttacga aaatattttg tgtcagatcg
     1681 gtttagagct tcttgtaagg tcgccatatt gatgaaattc attttacgac caccgcgtaa
     1741 agcgaagaga ccgatgaatc ctatcaagct caaaccacca atttggatta gcatcataca
     1801 gataatctgt ccaaaagtag aataggtttc agcaacggct ttggtaaata gccctgtcac
     1861 acaaaccatg gagacagatg taaagagatg atcccaataa cttgctgtag aggtgctaat
     1921 ttgtgagatg ggaagactta gtaaaattga tccagtcaga atcacgaata agaaactgat
     1981 aatgattcgc tgactgggag aaagtttgat cctaaatggt gacataattc taccttttct
     2041 caaaaaaata aaagatgaag atattgtagc acaaaagaaa gaaaatgtac gactaaaaca
     2101 cgcaaagaac ctgatttttt tctcttcttg aaagcttcat tattttttat taccatggat
     2161 tttataagtg gtgtttatat gaggtggctc attatatttg tgacaccagg attatgggga
     2221 aattattatg ggcaatgaaa aagtggtgcg gaccataaaa agaatctcct tagttgacct
     2281 agggagattt atttccattc tgctaagact agttgatgat agtgacgtaa aggtccgacc
     2341 ttttggagga ggtaggtagc agccagtccg accaataagc ctgataaaat tcctgtaaaa
     2401 gcgaggattg gcaggtagtt tagtacatag aaagaacggg caatggtagc aaaaacaaga
     2461 agctgaccaa gattgtgcaa catcccgccc agaatagaaa ttccaatagg actgacacgg
     2521 tttggaccga gctgcttggc agagagcatt cctacataac tcaaagtagt tccggcaaag
     2581 ccatagagga atgtggaaaa ggtgcctccc agaaaggttg agatgagcaa gcgtagagcg
     2641 acaaccttta ggctatcctt tgtagggagg gtaaagatag caattaagct aatcaaattt
     2701 cccagtccta gcttggcgcc tggagcaaaa gcaaatgggg gggtgatgag tcgttcaatc
     2761 aaagaaatga caactgcctg agctgctaac atcgtaataa agttaagtgt ttgacgttta
     2821 gaattcatgg gtgtagagaa aaaactcttt ctagtcgatt atctatttta ctatcatact
     2881 tgtttttgtt cactatggca agttttgttt gtgtatatta ctaattattg aaatttgctt
     2941 gtcaactatc ttggaatacg atataatgga aacatgtaat ttgttttgat tttcacaagg
     3001 aggaaacatt gtgacgaaaa atattgtgat tgtcggtgct ggttatgcgg ggattgcagc
     3061 agctcgattg ctaggaaaaa cttttaaaaa ggatcaagat gtaacagtta ccttgattga
     3121 taagaactct ttccatacct atatgacaga gttgcatgaa gttgcggctg ggcgtgtgga
     3181 agccaatgca atcaagtatg accttcaacg tatcttcaaa aaatatccaa aggttcaatt
     3241 ggtaacagat aaggttgttg agattgacta cgataagaaa caagtagttg cggaacacca
     3301 aactctagat tttgattacc tgctccttgc aatgggtggt gaggctaatg actttggtgt
     3361 gaaaggtgtt aaagaacacg gttttacact ttggtctatc gaagcagcag aacgtttgca
     3421 tgaccacatg attgacgctt gctatcaggc catgcgtgag catgatgaag ccaaacgtcg
     3481 cgctcttcta acatttaccg ttatcggtgc tggcttcaca ggtattgaga tgatcggtga
     3541 gttgattgac tgggtaccaa ttttggcgcg tgagttcaag ttggatccaa aagaattctc
     3601 tctcaaggtt gtcgaagcaa cgccaaatat cttggctatg gttactgaaa aagagcaagt
     3661 taaggctcgc aaataccttg agaaaaaagg tgttgaattg gttcttggcg atggtgtagc
     3721 aagtgtacaa gaagatagct tgacactttc atcaggtcgt caaattccta cctatacctc
     3781 tatttggaca gctggtgttc aagccaatac ggatgcaagt gaatttggta ttgaaaaagc
     3841 acgtgcaggt cgtttggtag ccaatgaatt catggaagcg aaaggcaagg aaaatgtcta
     3901 tgtagctggc gacttggttt actttgaaga atcagaagga aaaccaactc cacagattgt
     3961 acaagcagct gaacagacag gtcatactgc ggcaagtaat attattgcag caatcaaggg
     4021 tggcgaaaaa catagctaca aaggtaaata tgatgggttt atggtatcta ttggagcacg
     4081 ctacggtgta gccttcttga tggacaaata ccacatgtca ggctttatgg caatggctgt
     4141 caaacacatg gtaaacctac tctacttctt taccatccgt agtttcttct acatgggttc
     4201 ttatgttcgt catgaattct ttgacattca gaataagcga aacatttttg gcggtcatac
     4261 ttcaggcaaa ggaaatcttc tctggtctgt gccaatgcgt gtcctttatg gttcagtatg
     4321 gctctacgaa ggtatcaaga aagcctttgg tctattcgga acaacatcat ggtttgggga
     4381 tcaagttgtc ttcccattcc cttggttagc tgacccagta tctggtgcat ctgctgctga
     4441 ggcggtttca agtgcctcac aagcggcaac tgctgcggca gaagcggctg aaccaatttt
     4501 tggtttgagc tatgcctatg gtgaagcacc gatggctgtt ttggacaaaa tgcctgattg
     4561 gtttgctact atcatggaat ttatgatgcc aaaccaagaa gtagcactct ttatgcaaaa
     4621 atttatgaca gtagcagaaa tcggtattgg tctggctttg attgctggtg cctttgtatg
     4681 gattgtatct gcggcaaccg ttgctttggt agttatgttc agcctgtcag gcatgttcta
     4741 ctgggtaaat atttggttca tcccagcagc tatttctctt atgaatggtg cgggtagagc
     4801 cttcggtcta gactattgga ttatgccatg gttgggtcgt ttcctagaca agaagattta
     4861 tggaaagccc aagcatattt accgtatcaa ggataaaaaa taaaggaaat atagaaagtt
     4921 agtggtacat caaatttgga atacctatcc tgagattgag aggggacttg aagaggtaaa
     4981 atccatcatc ttatctgaga tgatggtcct gcatccagca gttacatcga agattgttga
     5041 atatgtagag gcgccaggga aatacctgcg tgccggcctc tgtctgctct ttgcacaaat
     5101 gacggaagga aagattagcc gttcaaagct atattttgct gcccatttag aagtcctgca
     5161 tctggcgact ctgattcatg acgatgtgat tgatggcgca gataaacgga ggggagtcac
     5221 ggcggctcat cagcaatttt cgaatcgaat tgctatctac acgggtgatt atcttctggc
     5281 ctattcaagt cgactatttg gaaaggggct tcgtttgcta gaagtatcac gtgatgattt
     5341 ggatttgggc aatgataagc tgatggaaac aattcttcga ggggaattat ctcagctact
     5401 caatcaattt gatgccaata tgactatgaa agcctatctc aagcaaattc aaggaaaaac
     5461 agcttttcta tttggacttg cctgtcagtt ggggagcttt gtaccaggcc aatctaggaa
     5521 agacagtagc atggcttttc ggtctgggca agcacttggc atggcatttc agctacgaga
     5581 tgacttaatt gactatcagc tggatgtagc agaatcagga aaacctagat tgcaagatat
     5641 tcaaaacggt atctatactg caccgctact ttttgccatg cgagaagaca agtctatcca
     5701 gcagcaattg cgggcttata ttcaatcccc tacggcagaa gggttggaaa tccttacaga
     5761 taggattttt gcaacgcatg ctattgccaa aacagagaaa ctgattgtta gctatttgga
     5821 aaaaatgatg aattttgtag atagaatacc acagttatcg actgcgtcta tgcaaaattt
     5881 ggtggcaata gtttttagtc attattttta aaaaataact agacattttc tctaattagg
     5941 tatatcatta taagtataaa actatttact taacaaaagg agcattgtta tgaaaacaac
     6001 taaagttgtg ttgaaaagtt tggtagttct tggtgcggta tttgcactcg cagcttgcgg
     6061 gtctaaacaa gaatctgctt caacttcgtc ttcaactaaa gaaacagtag tattgaaaga
     6121 tggtacttat aaagctgagt caagcaaaga cgattatggc tacaaaattg ttcacacatt
     6181 gactgttaaa gatggaaaaa ttagtgagtc aaaatttgac tacgaagcag aagacggaag
     6241 tcttaaatca gcaaatgaag aatacaacaa aaaaatgaaa gataaagctg gagtttctgc
     6301 cggtgaagca attgaacaac tcaatgcagc tttggttgag aaacaagaac tctcagctgt
     6361 tgaagttgta tcaggtgcaa ctcatacttc tgaagacttc aagaagagta cagaagccct
     6421 tcttgcagca gctgctgaag gaaaaacaga aactgtaaaa cttgactaat taagtctata
     6481 cagaaaagac acagtcgcac ttgtttggct actgtgtctt cttatttttt ggggaaggta
     6541 aaatcagtga aaaaaattgc aagtctattg ttcgtgggcc tactgatggt tttgcttgtt
     6601 gcctgtggtg gtaaacaaaa cgaaagttta tctgttgtga aaactccgtt gactcgtagt
     6661 gaaagcttac ttcacacagt agtgcagttg agtatttatc atgaaaatca ggaagaagcg
     6721 atggatgaag ctgtctccta tattaaggag atggaaagtc tgttgtccac aaacttggaa
     6781 ggggcagatg tctaccgtat caatcaggca gcaggaaaag aagctgtcaa ggttgatgaa
     6841 cgtacctttg aagtgattga aacagctatt gacatgagta aagaaagtca ggggctattt
     6901 gacatttcca ttggagctgt gagcaatctg tggaaaattg gagatgagga tgcacgtaag
     6961 ccgagtgatg aagaaatcaa agctgctctg ccatttatca attataaaga cattacttta
     7021 gataaggaga agaagaccgt ctttatcaaa gaaggaatga ccttagaatt aggagccatt
     7081 tccaaaggtt acattgcaga taaggttagg gaattgtttg ccagcaaagg gattacgact
     7141 gctatcatca atctaggtgg gaatgtagtg gttatggggg attcgccaac gacacaaaat
     7201 ggttggaatg ttggagttca agacccagac caagtgcgtg gatcaacggt cggttctgtg
     7261 ccagggacac atgattcggt tgttacctca ggtatttatg agcgttactt agaggtggac
     7321 ggtgtcaaat atcaccatat ccttgatccc aaaactggat atcctgtgga aaacgatatc
     7381 tcaggtgtga cagtcttttc caaaacatct atccaaggag atgccttatc cacaactctc
     7441 ttcttactag gtgtggaaaa aggtcttgac tttatcaatc agattgacgg tgtagaagct
     7501 gttttcatcg ataaggagca gggtgttcat ctgagtgatg gcttgaaaga aagctttgaa
     7561 ttaacgaatg aggagtatca tcttgtcaat gaataaatca actaaagggc tcagtttgcc
     7621 tgtatttcta gaatttgttg aaatgaagac caaggtagcc agtgtttttc cgatgaccct
     7681 ggggatttta tggagcctgt atcgctatca agctttcaat tggctcaata ctctcctctt
     7741 cattattgcc gtccttagct ttgacatgtg tacaactgcc atcaacaata gcatggacta
     7801 ccacaaggcc aaggatgaag cctatcgtca ggaaagcaat gtgattggaa aattctccct
     7861 agattttcgt cagatgattg gaatcgtcct tgctctactt attttttctc tactggtttc
     7921 attactcctt gtatggcgga ccagttggct cctcctaccg atgggagctc tctgtttcct
     7981 cattggtatc ttctatacct ttggacctat tccgctttcg agaatgccac tgggtgaagt
     8041 tttctctgga gtaaccatgg gatttggcat cttctttctt gctgtattta ttcagcaacc
     8101 agatttgcta ctgaccagcc aagtgagcgg tcagtggatg actttgcaat tttcttggat
     8161 aaaaataatt gaaattattt tcatgtccat tcctctggta accttgattg ctaatatcat
     8221 gttggctaac aacacctgtg atttagaaga agatattcgc aaccatcgtt atactctggt
     8281 ttactatatt ggcaagaaaa atgctcttaa attgtatttt gtcttggcaa gtttaccatg
     8341 gttgctgtgg ataatctact gtctgatagg attcttacca atttgggcac tggccggttt
     8401 aatcggagtt tggcctgctt ataagagtct agaaacattt ttgaaaaagc aagtcaaacg
     8461 ggaaaccttt atcgaggcag taaagagttt tgtactcttt gcgctgctat atgtggtgat
     8521 acttgcttta gcccttattt tctaaaaagg aaagacacag tcgttcataa ggctgtgtct
     8581 tctttgttat atcgtcagtt agtttttctt ttattacttc gacgagcgag gaaacatcgt
     8641 ttcctaattt ccaacttcaa acactccact ggagtatttg aactcgcctt gcctgattga
     8701 aacagtctgg gggactgttt caagtcaatg cctagaaata agaaagcatt gagttatgcc
     8761 tgcggctttt gatgcgaact ttgttcgctt tatctccaac ctccaaagat ttcccaaacc
     8821 tttggagcta gtactaaaag taaactaaaa gactatagtg gtaaaatgag ttcttcttca
     8881 tcagtgcttt ctccgccaac ggatttgatt tcaatcaaca ggttatgtgg caggcagacg
     8941 gagagttgac ccggctggct aatccagctg gtcataacgg caatttggtc tgggctattg
     9001 tcttccttga cacgaatgcg ttcgccatca acttcaatga tattgtattg cccttcattg
     9061 ggatagtagg tcttttcttg atgaggtgtg tcctttgata attcaaattg gtcgaccacc
     9121 tcaccattga tgcggacata ggcaattgtt tttgcctcat tagtatctgt agtcagatgt
     9181 gtgtaggtaa aaattgctgg aagaaaggat aaaactaggg tgaatccgat taagatataa
     9241 tcaaatagtt tgagttgttt gagaatggat ttgaatgtca tatacaatct attttataga
     9301 aaaaatccta ctttgtaaaa tgttggatgc agactacttt ttcaattgtc taaagaagag
     9361 taggatggct aacattcccc aaaatccagc atgaagtggc tgaatttttc cagcgaaaaa
     9421 tacaatggag aaagttaggg caaaacctgc aaagagaaac cagagcagtg gtttatgata
     9481 aagatagata gctttttgga aagcatttgc ttctgggcca ctagtctgcc agtcactatt
     9541 caagattgga agcatagtga acagtaagat aaaaattggt ggattgtccc cagtcaggta
     9601 gctatgtata tacaggctac aaattgctgt ataggagaga acaatcaaag tgagtatgaa
     9661 tttcggtttg tcaacgttca tctggcttct cctttttgaa ataaatccga taaagaatag
     9721 cggcagcaaa tccagcagga aggatgagga taagtggttt gacatgtcct aaccaaatgc
     9781 ccacggaata ggtcaaggtc atggcaaaca gggcaaagat ggcttgaatg ataaagtagc
     9841 gtttttcttc tgctgtttga taggatttga tgatttggat ggtcggtagc atgagcagga
     9901 atgaaccgtt aatcggctca ttgaccatgt aagagtagat gaagaaggca gaaaataaag
     9961 cataaaatag aacaaaaaat cgacaggttt gtttgggtgt aaaaggttta ttcatggggt
    10021 cagctcctta ttttttcttg acagaatctg cttccagttt ttgcagatag gcaatggcag
    10081 acagggctag actggcaaag aggcccatca tgccaccgaa gaggagggat tttacgtgga
    10141 agatggaagc cagtagggga agctggaggc taaagaggtc tgccagccca gcaaagaggc
    10201 tagatagcag ggcaactccc agtcccaaaa ccagtggatt gagggtctgt ccttgctcag
    10261 ttcgtccatg tcatattgag gcaggtcagc atggagggtg cgcatattaa cgataccaat
    10321 taggataata ctgaagaagg caatgatcat tggatagtag gcagccacct ccagagggta
    10381 gcggtaggct aggaagtagg cgatggcatt tccaagagct aggaagtaga agtagtagat
    10441 aaaggcttgt ccgccgatag catcagcctc ggcccgtcgg tattcgtcta aaggaccgcg
    10501 gataccataa aaacgtttaa tcatattttt gatccacttg ggttcttctt tggcaatagc
    10561 agagctgaca gttagttttt ctgccttttt catgcgttta cgaagagtga tttcgatata
    10621 aattcccatg aaaacaccga ctagacaggc tgcaaggaat tttcggaggt caaataaatg
    10681 gtctagtgga ttgagtcctt ccatccaggc atcaaatccc gtgttccaga tatacatacc
    10741 acaggtgaaa tagagggcga atttgatact tgctcccttg aatttctttt gttccttggt
    10801 agtcagttct tctacatcta aactgtccac ttgactgtgg cgcatcttgg atgtcatata
    10861 catactggcg gaaagagtgg ataggagtag agccgttggg tagccatagg caacgacttc
    10921 tgggtagcgt ttggataggg caagtgccag cagggttata gccatggtgc cccaaaagag
    10981 caggataaag caggtattgc ctagtcggaa ggcttctttt tggcgaaatt catccaaggg
    11041 ccctgcgata ccgtaaaatc gtttgattaa tttatcttga aaggtttctt ttttcataag
    11101 cagctcctta tttttgatcg aacaatggta agatgtaaac aaagcctaag aagtagatgg
    11161 tcccagcaat cagcaattgt agccaaaatt ttgcttggct gatggtgtgc aagatttctg
    11221 ctccgctatt gccccaaagc tgaaagagga caaagagcgg tataaaaata agggtagaga
    11281 taagggcttg acgtatattc tttttcatgg tttttcttcc tttctattca ttccaaaaga
    11341 gactattaag atcggtctgt aaagccttgg ctaggttgat acagaggtct agcgagggat
    11401 tgtacttgtt gttttcaatc atgttgatgg tctgcctgga tacgccgatg gccttggcca
    11461 gctccagctg ggaaatacct aacagtaggc gataatcttt gacacggttc atgtgccctc
    11521 ctttctgtgt caattatatc tgacacaatt gtctaaaaat gaggggagtg ggaaagaact
    11581 cgaccattta
//
LOCUS       DASFRC010000067        11438 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.067, whole genome shotgun sequence.
ACCESSION   DASFRC010000067 DASFRC010000000
VERSION     DASFRC010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 11438)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11438)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11438
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.067"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..4145
                     /locus_tag="U1087_001226"
     CDS             <1..4145
                     /locus_tag="U1087_001226"
                     /inference="COORDINATES: protein
                     motif:HMM:NF017180.1,HMM:NF019216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755706.1"
                     /translation="PVTEEPEEPIKTKPELVLSILKENVDDKSVELSYTLTDSDSTFV
                     KVLVSLYKGDELVTEIAIQAKDELDKVRFTELLLNTEYTVKTRFTYNLGNEDVEEDLP
                     TEKIELENKLLELREYKSIELYQVDEFGEKTRVTALSNLPTSVENYLVKIATVNNKEI
                     YLPVDNFENDVNGIKVSIIHPKLVKFNQNNSSFDEHHTFTVDKLVLQEGAYSKFSELV
                     DAINNNPSGTYYLAADMVVDKEVSTDTYITKEFTGSLKSLGDHKTYSILQLDRPLFST
                     LKNARVENISLKDVSIKNNQTAVAALAKKADKATIDKVTVSGNITAKQNIAGLVYEAT
                     NGTSISNSIIDVSLGNTASYETYYMGGVTGILNSSTIDKVRVNVAIDAKTASGRGQKI
                     GGVTADMILSMITNAYVTGNIQATAPADTGGVVGTARMSVLNNIVTGASVTNGGIIAS
                     GQNAYATVGSTISNLYSVEGHAAGQPNPTIQSTSLSQEAVLEKIKAWGIPTTPTTTGQ
                     ENSDSQSNSVQTIDYNQVQNAQAKRRTAYENTSKLLPFYDRNTIVKYGNLIDEASNLY
                     SKPIQSVLTLNEDGVATNIYDQHASLTKLLIHYEDGTSEVLPLVFKGEYGNTKVVEYR
                     LGEQLLYTPEQLLSLETSLIDDLVQEFSQVELYSEKMAEVLHIKTADKHAKLKDLYLD
                     ESFAEVKANLEEHIKGLLANRLVVDTTSKAIRDVIKKEFLADKEKIMFALAYLNRLYG
                     IKYGDINIKNIVLHHADFYKRQLDTLGWLRSFTDKLTKHDDQFYVSQKGYEDMYFDRL
                     TLANNAAIHKERFGALSSQFGTVRDFLEYNKKLFLGETDSRKWFKEATNAFVYEIPSN
                     ANSSIDTSLYSHLGRIPRYEKYYLPLLNIKEKDDIFVMSSMATVAFGGYGRYVDTALK
                     KTNPEQYYQAVKTVQTSLIPKHGKRLGDFLDMWYQMADSHLRDKFIQRSTEIWDGYWI
                     KDSNAFEDQTDKRRWADKYDQEYRYVQELAGALNEWHRKSNDSAFSDTVTFVKFSNRD
                     MLSDLGDSTMSHELVHNYDETIMLDGHKRRPGQDAESYAMGLLQSSAGGGIYYYGFNF
                     MNEHSPNTPHNVSSSRFKTKEDLQTYLKGIFDVTYLLDAVEIEAIATKGKEAYPYFFN
                     KIELVPATEAHTNQIPGYQNTHDRIRKLSDVELANLNISTINDAIDHALVAKTSLLPE
                     QDYLRENLKNYYFVPLYYPIYAGLQNNSGTVGGLQFRKTALELLAAKGWEEGFIPYAT
                     DKLKAEAEAAGRPLSDQFIFEKIFANQYADYTSFKKAMYKERWDKKDRLKAITISFNG
                     QTETIDNIETLSRLMAEAVDKDYQAAQNGQIGFNRQGLKDAILKAYVKLTDSFSSSIF
                     GE"
     gene            4277..4651
                     /locus_tag="U1087_001227"
     CDS             4277..4651
                     /locus_tag="U1087_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002305392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1149 family protein"
                     /protein_id="HEM4755707.1"
                     /translation="MEIIRDKEFVNQYHFDARNHAWEKENGIPETKLKVDFQLIEQNR
                     AENRTSMITILRFMIVLEHFVISGAMSQAVHLPNRLVEEPTEFTDEEKRVLVEPLLDI
                     LKRMTYEVTEIAFDAPGVNLEF"
     gene            4653..5504
                     /locus_tag="U1087_001228"
     CDS             4653..5504
                     /locus_tag="U1087_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HEM4755708.1"
                     /translation="MKLAVITDSSAVLNVQSIERDDLFVLSIPVSIDGENYIEGQNLT
                     VEEFYQKMASSKELPKTSQPSLMELEEILRGLKDKGYTHALGLFLSSGISGFYQNIQY
                     LADEFEGLTVAFPDTKITSAPLGMMVENVLKWADSGLSFEEILGKLDQEIGKTTAFIM
                     VDDLNHLVKGGRLSNGAALLGNLLSIKPILYFTDEGKIEVYEKVRTEKKAIKRLIEIL
                     QEQTTEGQYQIAIIHANAPQKAKNFKQQLEEAGVGSDLPIVSFGSVIGTHLGEGAVAF
                     GISPIIE"
     gene            5513..6280
                     /locus_tag="U1087_001229"
     CDS             5513..6280
                     /locus_tag="U1087_001229"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002262893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HEM4755709.1"
                     /translation="MTIKVIIAGFKGKMGSTAVEMVKGDAALSLAALVDPFATETEVD
                     GVPVFKTKEEVASLEADVWVDFTTPKFAYENTRFALENGFAPVVGTTGFTPEEIEELT
                     ALSAEKGLGGLIAPNFAIGAILLMQFAAQAAKYFPNLEIIELHHDKKKDAPSGTAVKT
                     AELISQVRQSQTQGAADEEELIAGARGAEFDGFRIHSVRLPGLVAHQEVIFGAQGEGL
                     TIRHDSYDRISFMGGVNLGIKEVVKRSQLVYGLEHLL"
     gene            6277..7488
                     /locus_tag="U1087_001230"
     CDS             6277..7488
                     /locus_tag="U1087_001230"
                     /EC_number="2.7.7.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HEM4755710.1"
                     /translation="MKLNNLPSEFQEALPILEKIKAAGYEAYFVGGSVRDAILGRPIH
                     DVDIATSSYPQETKQIFSRTIDVGIEHGTVLVLEGKKEYEITTFRTEEEYVDFRRPSQ
                     VSFVRTLEEDLKRRDFTVNAFALDEEAQIVDLFDGMNDLKNRTLRAVGIPAERFNEDA
                     LRIMRGFRFAATLDFEIEPTTFTAMVETAPLLEKISVERSFIEFDKLLMADFWRKGLR
                     AMIDSKAYDFLPDLARKGEQLASMLSSLTEEFCFSTSEQAWAMLFVCLGIDNIKSFLK
                     KWKTSNDFQRSVVKLVEIYQLRQAGPVTKQICFKYGKEFLYLVEELRQAQGLVTEFEA
                     IDQIDRALTIHDKHEIVVNGGHLMKAFDLKPGPVLGELLKEVEFQIVEGQLENEEQAI
                     MTFVKGILENE"
     gene            7481..9349
                     /locus_tag="U1087_001231"
     CDS             7481..9349
                     /locus_tag="U1087_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011836912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM4755711.1"
                     /translation="MSDFIVEHLTKSVGDKTVFADLSFIIHQGDRIGIIGVNGTGKTT
                     LLDVLSGRIGFDGDVSPFRTKNAYKIAYLTQEPDFDESKTVLDTVLSSDLRETQLIRE
                     YELLLSHYDEASQARLEKVMAEMDSLNAWEIESQVKTVLSKLGLTDLNKTVAELSGGL
                     RRRVQLAQVLLGNADLLLLDEPTNHLDIDTIEWLTTFLKNTKKSVLFITHDRYFLDNV
                     ATRIFELDRANLTEYQGNYQDYVRLKAEQDERDAALRHKKEQLYKQELAWMRRQPQAR
                     ATKQQARINRFHDLKGDLANKIDDSELEINFETSRIGKKVINFENVSFSYPDKPILED
                     FNLLIQNKDRIGIVGDNGKGKSTLLNLIAGDLQAHSGKVDIGETIRIGYFSQTIKGLD
                     ESKRVINFLQEVAEEAKTTSGMVSIAELLEQFLFPRNTHGTLIEKLSGGEKKRLYLLK
                     ILLQRPNVLLLDEPTNDLDIATLTVLEHFLQGFTGPVITVSHDRYFLDKVANKILAFE
                     DDGIQTFFGNYTDYLDEKAFLASSSAISLEKPKEKTEKIKENKKRMSYFEKQEWATIE
                     EDIAGLEERIATIEAEMLTCGSDFTKLSDLQKELDEKNDLLLEKYERYEYLSELEG"
     gene            9350..9685
                     /locus_tag="U1087_001232"
     CDS             9350..9685
                     /locus_tag="U1087_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755712.1"
                     /translation="MKVLVMSYMVIYLLVTLGAALFSYFKTKKMNALRLILTILSMIL
                     LANTLYFYSQSYHDLQMVGFALGFTFISTLFLYNGTKEGSNFTTVMLFSIGRFILHIQ
                     FLILLYLFR"
     gene            9779..10738
                     /locus_tag="U1087_001233"
     CDS             9779..10738
                     /locus_tag="U1087_001233"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000078546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family glucokinase"
                     /protein_id="HEM4755713.1"
                     /translation="MSKKIIGIDLGGTSVKLAILTTEGEIQEKWSIKTNILDDGSHIV
                     PDIIESIQHRFETHGLTKDDFLGVGMGSPGVVDSEAGTVIGAYNLNWKTLQLVKDQFE
                     SALGLPFFIDNDANVAALGEQWVGAGNNNPNVVFMTLGTGVGGGVIAAGNLIRGVKGA
                     GGELGHITVDFNEPFACTCGKKGCLETVASATGIVNLSRRYADQYAGDAKLKQMIDDG
                     QNVTAKDVFDLAKEGDNLALIVYRHFSEYLGVACANIAAVLNPAYIVLGGGVSAAGEF
                     LLDGVRKVFAENSFPQIKESTQIVLATRGNDAGVLGAASLVLK"
     gene            10863..11141
                     /locus_tag="U1087_001234"
     CDS             10863..11141
                     /locus_tag="U1087_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755714.1"
                     /translation="MKQVSMPKLIDYLTIVGLLILLSAFFLDYWIRDWFFPSSWGNVA
                     TMLILPILGTLILILSIYYKKLWTGLISIFLMISFPLIFGIGYFIFGP"
     gene            11153..>11438
                     /locus_tag="U1087_001235"
     CDS             11153..>11438
                     /locus_tag="U1087_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755715.1"
                     /translation="MNLTLLKRLNLVLYGIVIFLFVMLFLPIGQWFDIVNVNFKLTFF
                     IIPFFGLASLPTAIYTKNVRQILLSVLLVTLYFILFSLITALSGLFHLNFY"
BASE COUNT         3479 a         2110 c         2542 g         3307 t
ORIGIN      
        1 ccccagtaac ggaagaacca gaagaaccta ttaaaaccaa accggagtta gttttatcaa
       61 ttcttaaaga aaatgtagat gataagagtg tagaactaag ctatacactg acagatagtg
      121 attccacatt tgtcaaggtt ttggtatctc tatacaaagg ggatgaatta gtcacagaaa
      181 tcgctattca agctaaagat gagttagata aggtgcgttt tacagaatta ttactaaata
      241 ctgaatatac tgttaaaaca aggtttactt acaatctagg caatgaagat gttgaagagg
      301 accttccaac agaaaaaatt gaactagaaa ataaattact ggaattacga gaatacaaga
      361 gtattgagct gtatcaagtt gatgaatttg gtgagaaaac aagggtcaca gccttgagta
      421 atcttccaac ttctgtagaa aattatcttg ttaaaattgc tactgtaaac aataaagaaa
      481 tctacctccc cgtcgataac ttcgagaatg atgtcaatgg cattaaggtg agcattattc
      541 atccaaaatt agtaaaattt aatcagaaca attctagttt cgatgaacac cataccttta
      601 cagttgacaa gcttgtctta caagaggggg cctacagtaa atttagtgaa ttagtagatg
      661 ctatcaataa caatcctagt ggaacttatt atctagctgc tgatatggtt gttgataagg
      721 aggtttcgac cgacacctac attaccaaag aatttactgg aagtctgaag agcctgggtg
      781 accacaagac atattctatt ttgcagttgg atagaccgct tttcagcacg ctcaagaatg
      841 ctagggttga aaatatctcc ttgaaagatg tgagcattaa aaataatcaa acagcagtag
      901 ctgccttagc aaaaaaagca gataaggcta ccattgataa ggtcaccgtt tcaggaaata
      961 ttacggccaa acaaaatatt gctggtttgg tttacgaagc aacaaacggt acaagcatta
     1021 gtaattccat cattgatgtc agtctaggta acacagcaag ctatgaaacc tactatatgg
     1081 gtggtgttac aggaatacta aatagttcaa ccattgacaa ggtaagggtt aatgtggcaa
     1141 ttgatgctaa gactgctagt gggcgaggcc aaaaaattgg cggtgtcact gcggatatga
     1201 ttttatctat gattaccaat gcctatgtta caggaaatat acaggctaca gcacctgctg
     1261 atactggagg tgttgtaggt acagctagga tgtctgtctt gaataatata gtaacaggtg
     1321 catctgttac aaatggggga atcatcgctt cgggtcaaaa tgcctatgca actgtagggt
     1381 ccaccataag caatctgtat agtgttgaag gtcatgcagc aggccaacca aatcctacca
     1441 ttcagtctac aagcctttct caagaagccg tgctagagaa aatcaaggca tggggaattc
     1501 caacaacacc aaccacaaca ggacaggaaa atagcgacag tcagtcgaat tcagtgcaga
     1561 ccatcgatta taaccaggtt caaaatgctc aggctaaacg aagaactgcc tatgaaaata
     1621 cgtctaagtt gttgccattc tatgaccgga atacgattgt taaatatggt aacttgattg
     1681 atgaagcaag taatctctat agcaagccta tccagtcagt tctgaccttg aatgaggatg
     1741 gagtagcaac aaatatctat gaccaacacg cttccttgac caaattacta atccattatg
     1801 aagatggaac ttcagaagtt ctgcctttgg tatttaaggg agagtacggc aataccaagg
     1861 ttgttgaata ccgcttaggt gaacaacttc tctatacacc agaacaatta ctatctctgg
     1921 aaacaagtct aatcgacgac ctagttcaag aattttctca agttgaactc tatagcgaaa
     1981 agatggccga ggttctacat atcaaaactg cagacaagca cgccaaacta aaagacttgt
     2041 atttagatga atcctttgca gaagtcaaag ccaatcttga agaacatatc aaaggtttgc
     2101 tggccaatag actggtagtt gataccacaa gcaaggctat cagggatgtc attaaaaaag
     2161 aattcttggc agataaagaa aaaattatgt tcgcccttgc ctacctcaat aggctatatg
     2221 gcattaaata tggagatatc aatatcaaga atattgtgct ccatcatgcg gatttctata
     2281 agcgtcaatt agatacttta ggctggttga ggtcatttac ggataaactc accaagcatg
     2341 atgatcagtt ctatgtttcg caaaaaggct acgaagatat gtattttgac agattaacac
     2401 ttgccaataa tgcagccatt cataaggaac gttttggagc actctctagt caatttggaa
     2461 cagttcgtga tttcttggaa tacaataaga aattgttctt gggagaaact gattcaagga
     2521 agtggtttaa agaagcgacc aatgcctttg tttatgaaat tccatccaat gcaaactcga
     2581 gcattgacac tagtctatat agtcatctgg gacgtattcc acgctatgaa aaatactatt
     2641 tgccattgct gaatatcaag gagaaggatg atattttcgt aatgagctca atggcaacag
     2701 tagcctttgg tggttatgga agatatgtgg atacggcttt gaaaaagacc aatcctgaac
     2761 aatattacca agcagttaag acagtacaga caagtctgat accgaaacac ggaaaacgat
     2821 taggtgactt tttggatatg tggtatcaga tggcagattc tcatctaaga gacaagttta
     2881 tccaacgctc aactgaaatt tgggatggtt actggatcaa ggattcaaat gcatttgaag
     2941 accaaactga taaacgtcgt tgggcagata agtatgacca ggaataccgc tatgttcagg
     3001 agttggcagg tgccttgaat gaatggcata gaaaatcgaa tgatagtgcc ttttcagaca
     3061 cagtaacctt tgtaaaattc tcaaatcggg acatgctatc ggatttaggt gattcgacca
     3121 tgagccatga attggtccat aactatgatg aaactatcat gttggatggt cataagcgtc
     3181 gtcctggtca agatgcagaa tcctatgcta tgggcttgtt gcagtcatca gctggtgggg
     3241 gtatttatta ctatggattt aatttcatga atgaacatag tccaaatacc ccacacaatg
     3301 tttcaagtag tcgcttcaaa acaaaagagg atttgcaaac ctatctaaaa ggaatctttg
     3361 atgttaccta cctcttggat gcggttgaaa tcgaagcgat tgctactaag gggaaagagg
     3421 cttatcctta cttctttaac aagatagagt tggtcccagc cactgaagca cacaccaatc
     3481 agattcctgg ctatcaaaat actcatgatc gcattaggaa attaagtgac gtggaactag
     3541 ctaatttaaa tattagtacg atcaatgatg ccattgatca tgccctagtt gccaaaacat
     3601 cactgttacc agagcaagac tatctacgtg aaaatttgaa gaactattat ttcgtaccac
     3661 tttattatcc gatttatgca ggcttgcaaa ataatagtgg tactgtcggt ggtttacaat
     3721 tccgtaagac agccttggaa cttcttgctg caaaaggttg ggaagaaggc tttattcctt
     3781 atgcaacaga caagctaaaa gcggaagcag aggcggcagg tcgtccatta tccgatcagt
     3841 ttatttttga aaaaatattt gctaatcaat atgcggatta tacaagcttc aaaaaagcta
     3901 tgtacaaaga gcgctgggat aagaaggata gactgaaagc catcacgatt agcttcaatg
     3961 gtcagactga gacaatagat aatattgaaa cgctgagtag gctgatggcg gaggcagttg
     4021 ataaagatta tcaggcagct cagaatggtc aaataggatt taatcgccaa ggtttgaaag
     4081 atgctatttt gaaagcctat gtcaagctaa cagatagttt cagttcctct atatttggag
     4141 aatgatggaa gtctgctcta tatacaaaat gggaagaaat tgaaagataa tattttcggt
     4201 ttcttccttt tattttttaa atcttcaata cattatggta taatatgcat aatattgttt
     4261 ataggagaag ttagaaatgg aaatcattcg cgataaagaa tttgtcaatc agtatcattt
     4321 tgatgcccgc aatcacgcgt gggaaaaaga gaacggaatt ccggaaacaa aattgaaagt
     4381 tgactttcaa ttgattgagc aaaatcgtgc ggaaaatcga acatctatga ttaccatttt
     4441 gcgctttatg attgtactag agcattttgt gatttcaggt gccatgagtc aggccgttca
     4501 cttaccaaat cgattggtag aagaaccaac tgaatttact gatgaggaaa aacgtgtttt
     4561 ggtagagcct cttttggaca ttttaaaacg aatgacttat gaggttactg aaatcgcctt
     4621 tgatgcacca ggagtgaatt tggagtttta atatgaaatt agcagttata actgactcat
     4681 cggctgtttt gaatgttcaa agtattgagc gggatgacct gtttgtccta agcattccag
     4741 tcagcatcga tggggaaaat tatatcgaag ggcaaaattt gacggttgaa gagttttatc
     4801 aaaaaatggc ttcatctaaa gaattaccta aaacaagtca accgagtttg atggaattgg
     4861 aagaaattct tagaggcttg aaagataaag gctatacaca cgcacttggc ttatttttgt
     4921 catcaggtat ttcaggtttt tatcaaaata ttcaatattt agctgatgaa tttgaaggat
     4981 taaccgttgc ctttccagat accaaaatca catcggctcc tttaggcatg atggtagaaa
     5041 atgttctcaa atgggctgac tctggactta gttttgaaga aattttaggt aagctggacc
     5101 aagaaattgg gaagacaaca gcctttatca tggtcgatga ccttaatcac ttggtaaaag
     5161 gtggtcgctt gtccaatggt gcagccttgc ttggcaatct tttgagcatc aaaccgattc
     5221 tatactttac agatgaaggt aagattgaag tttatgaaaa agttcggaca gagaagaagg
     5281 ccattaaacg gttaatcgaa attctccaag aacaaacaac agaagggcag tatcaaattg
     5341 ctatcattca tgccaatgca cctcagaagg ctaaaaactt taaacagcaa ttggaagaag
     5401 caggtgtcgg tagcgatttg ccaatcgtgt catttggttc agttatcggt acacacttgg
     5461 gagaaggggc agtggccttt ggtatttctc ccattattga ataggagttt gcatgacaat
     5521 taaggtaatt atcgcaggat ttaaagggaa aatgggctca acagctgttg agatggtcaa
     5581 aggcgacgca gcacttagtc tggctgcctt ggtggaccca tttgcgacag aaacagaagt
     5641 agatggtgtt cctgttttca agaccaaaga agaagttgcc agcctagaag ctgatgtctg
     5701 ggtggatttt acaacgccaa aatttgccta tgaaaacact cgttttgcct tggaaaatgg
     5761 tttcgcacct gtggttggaa cgacaggatt tacccctgaa gaaatcgagg aattgaccgc
     5821 cttatctgct gagaagggat tgggtggctt gattgctcct aactttgcta ttggcgctat
     5881 cttgctcatg caatttgcag cacaggcagc caagtatttc ccaaatcttg aaatcatcga
     5941 attgcaccat gacaagaaga aggatgcacc gagtggtacg gctgtcaaaa cggccgaact
     6001 catttcacaa gtccgtcaat cacagactca aggtgcagcg gatgaagaag aactgattgc
     6061 tggagctcgt ggggcagaat ttgacggctt ccgtatccac tcagtacgct tgccaggcct
     6121 tgttgcccat caggaagtga tttttggtgc gcaaggtgaa ggcttgacca ttcgtcatga
     6181 ctcttatgat cgtatttcct ttatgggcgg tgtcaatctc ggcattaaag aggtagtcaa
     6241 acgctcacaa ctcgtttatg gtttggaaca cttattatga aattaaacaa tctgccttct
     6301 gagtttcagg aggctttgcc gattttagag aaaattaaag cagctggtta cgaggcttac
     6361 tttgttggtg gctccgtgcg tgatgccatt ctcggtaggc ctattcatga tgtcgatatt
     6421 gcgacatcca gctaccctca ggaaacgaaa caaatctttt cacggactat tgatgtcgga
     6481 attgaacacg gtacggtgct agtattagag gggaaaaagg agtatgaaat taccaccttt
     6541 cggacagagg aggagtatgt cgacttccgc agaccgagcc aggtttcttt tgtgcgtacc
     6601 ttggaagagg atctgaaacg ccgcgatttc acagtcaatg cctttgcttt ggatgaagaa
     6661 gcacagattg ttgatctctt tgatgggatg aatgacttaa aaaaccgcac cctacgagct
     6721 gtaggcattc cggctgagcg tttcaacgaa gatgccctcc gtatcatgcg tggatttcgc
     6781 tttgctgcga ccttggactt tgaaattgag ccgactacct tcacagctat ggttgaaacc
     6841 gcaccacttt tggaaaaaat ctcggtggaa cgtagcttta tcgagtttga taaactcttg
     6901 atggcggatt tttggcgaaa aggcttgcgc gctatgattg attccaaggc ttatgatttc
     6961 ttgcctgatt tagctcgaaa aggagaacag ctggctagca tgctgtccag tctgacagag
     7021 gaattttgct tttcgacttc tgaacaagcc tgggccatgc tctttgtctg cctaggtatt
     7081 gataacatca agtcctttct gaaaaaatgg aaaaccagca atgatttcca acgcagcgtg
     7141 gtcaagttgg tagagattta tcagctccgc caagcaggac ctgtcactaa acaaatctgt
     7201 ttcaagtatg gcaaagaatt cttgtactta gtagaggaac tccgtcaggc acaaggtctt
     7261 gttactgagt ttgaagcaat tgaccaaatt gatcgagcct tgaccatcca cgacaagcat
     7321 gaaattgttg tcaatggagg acatctgatg aaggcatttg acctcaaacc aggtccagta
     7381 ttgggagaac tactcaaaga ggtggaattc cagattgtgg aaggacagct ggaaaacgaa
     7441 gagcaagcga ttatgacatt tgtgaaagga atcttagaga atgagtgatt ttattgttga
     7501 acatctgact aaatctgtcg gagataaaac ggtctttgct gatctgtctt tcatcatcca
     7561 tcaaggcgac cgtatcggga ttattggggt caatgggaca ggaaagacga cattgttgga
     7621 tgtcctgtca ggtcgcatcg gttttgacgg agatgtatca ccttttcgta caaaaaatgc
     7681 ctataaaatt gcctatctga cccaggaacc tgattttgat gaaagtaaga cagttttaga
     7741 caccgttctt tcatctgacc tccgtgaaac ccagctgatt cgtgaatacg agttgctctt
     7801 atctcattac gatgaagcca gtcaagcaag attagagaaa gtcatggctg agatggattc
     7861 tctcaatgct tgggagattg aaagccaggt caagactgtc ttgtcgaaac tcgggctaac
     7921 agacctcaac aaaaccgttg ctgagttatc gggtggtcta cgtagacgag tgcaattggc
     7981 ccaagtcctc cttggcaatg ctgacttgct cttgctggat gaaccgacta accacttgga
     8041 cattgatacc attgaatggt tgacgacttt cttgaaaaat actaaaaagt ctgttctctt
     8101 tattacccac gatcgctatt tcttggacaa tgtggcgaca cggatttttg aattggaccg
     8161 cgccaactta accgaatatc aaggaaatta ccaggactat gttcgcttga aggcagaaca
     8221 ggacgagcga gatgccgccc ttcgccataa gaaagagcag ctctacaagc aggagttagc
     8281 ttggatgcgc agacaacctc aagctcgtgc taccaagcaa caggctcgta tcaatcgttt
     8341 ccatgacctc aaaggcgatt tagccaacaa gatagacgat agcgagctgg aaatcaattt
     8401 tgaaacctct cgtatcggta aaaaagtcat taactttgaa aatgtcagct tttcctatcc
     8461 tgacaagccc attttagaag actttaacct gctcattcaa aacaaggacc gcatcggtat
     8521 tgttggtgat aatggtaaag gaaaatctac cttactcaat ctaatcgcag gtgatttgca
     8581 ggcacacagc ggtaaggtag atattgggga aaccatccgc attggttatt tttctcagac
     8641 catcaagggc ttggacgaaa gcaagcgggt catcaatttc ttgcaggaag tggcagaaga
     8701 agctaagacg acatctggta tggtttctat cgcagaactc ttggagcagt tcctcttccc
     8761 acgtaatacc catggtaccc tgattgaaaa gttgtctggt ggggagaaga agcgacttta
     8821 tttgcttaag attctcttgc aacggcccaa tgtcctctta ctggatgaac cgactaacga
     8881 tttggacata gcgactctga cagtcttgga acatttcttg cagggcttta ctggtccagt
     8941 tatcaccgtc agtcacgacc gttatttctt ggacaaggtg gctaacaaaa tcttggcttt
     9001 tgaagacgac ggcattcaga ccttctttgg caactacaca gactatctgg atgagaaggc
     9061 ctttctggct tccagctctg ccatttcctt ggaaaaacca aaggagaaaa ccgagaaaat
     9121 caaagaaaac aagaagcgga tgtcctactt tgagaagcag gaatgggcga ccatcgaaga
     9181 ggatattgct ggcttggagg agcggattgc gacaatcgag gcggaaatgc tgacctgtgg
     9241 tagtgatttt acaaaattgt ccgatttgca gaaggaattg gatgagaaaa acgacctgct
     9301 cttggaaaaa tatgagcggt atgagtatct gagcgaactg gagggctaga tgaaagttct
     9361 tgtcatgtca tatatggtca tctatctctt ggtgaccttg ggagccgctt tgtttagcta
     9421 ttttaagact aaaaagatga acgctttacg cttgatttta actatcctat ccatgatatt
     9481 gctggcaaac accttgtatt tttatagtca gtcttatcac gacttgcaga tggtggggtt
     9541 tgctctaggt tttaccttta tttctactct ttttctctat aatggaacga aagaaggtag
     9601 taattttacg acagttatgc tcttttccat tggaaggttt atcttacata ttcaattttt
     9661 aattttgctc tatctatttc gttagggcaa attttttatc cgttcaaatt tttgaaaagg
     9721 ctttacgcaa acctttgcat tatgttataa taaaaaaaat acatttgagg tgatgattat
     9781 gtctaaaaaa attatcggaa ttgaccttgg gggaacttct gttaaattgg ccattttgac
     9841 tactgaggga gaaattcaag aaaaatggtc tatcaagaca aatattttag atgatggaag
     9901 tcatattgtt ccagatatta tcgagagcat tcaacatcgt tttgaaaccc atggtttgac
     9961 aaaagatgac tttttgggtg ttggtatggg gtctcccggt gtagtggata gtgaagctgg
    10021 cactgttatc ggagcctata acctcaactg gaagaccttg caattggtta aagatcagtt
    10081 tgaatctgcg ctcggtttac cattctttat cgacaatgat gccaacgtag cagctcttgg
    10141 tgagcagtgg gttggtgctg gaaacaacaa tccaaacgtt gtctttatga cgcttggtac
    10201 aggtgtcggt gggggtgtca tcgctgctgg aaacttgatt cgtggtgtca aaggcgctgg
    10261 tggcgaattg ggccatatca cagttgattt taatgagcca tttgcatgta cttgtggtaa
    10321 gaaaggttgt ctagaaacag ttgcttcagc gacaggtatt gtcaacctca gccgtcgcta
    10381 tgctgatcaa tacgcaggcg atgctaaact gaaacaaatg attgatgatg ggcaaaatgt
    10441 aacggctaaa gatgtctttg atttggcaaa agaaggcgat aatttggctt tgattgtcta
    10501 ccgtcacttc tcagaatacc taggtgttgc ttgtgcaaac attgctgcag tcctcaatcc
    10561 tgcctacatc gttctgggtg gcggtgtatc agctgcagga gagttcttat tggatggcgt
    10621 tcgcaaggtc tttgctgaaa atagcttccc acaaatcaag gaaagtacac aaattgtctt
    10681 ggcaacacgt ggtaatgatg caggtgtatt gggcgcagca tcacttgtct tgaaataata
    10741 actgaggcag gggaaactct gctttttttc taatccgctg tcacactttc tttatataca
    10801 tatattgaaa gtcagttgat aaaagggtac aataatagtg aaagagaaag gagtgttggt
    10861 gtatgaaaca agtaagtatg cctaaactaa ttgactatct aactatagtc gggcttttga
    10921 ttttactgtc tgcctttttc cttgattact ggattcgtga ctggtttttc ccgtctagct
    10981 ggggaaacgt agcgaccatg ttgattcttc ctatactagg gactctaatt cttatactat
    11041 ctatctatta taaaaaattg tggactggtt tgattagtat cttcttaatg atctcatttc
    11101 ctctgatatt cggtattggc tactttatat ttggccccta gaaggagtgg ttatgaacct
    11161 gactttacta aaaagattaa atctagtttt gtatggtatc gtaatttttc tcttcgtcat
    11221 gctatttttg ccaatagggc aatggtttga tattgtaaat gtgaatttta aactaacatt
    11281 tttcatcatt ccatttttcg gactagccag cttaccaacg gctatttaca ctaaaaatgt
    11341 tcgtcagata ttgttgagtg ttctcttggt taccttgtat tttatattgt tcagcctaat
    11401 aactgcccta tctggtttgt tccaccttaa tttttatt
//
LOCUS       DASFRC010000068        11237 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.068, whole genome shotgun sequence.
ACCESSION   DASFRC010000068 DASFRC010000000
VERSION     DASFRC010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 11237)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11237)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11237
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.068"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            35..883
                     /locus_tag="U1087_001236"
     CDS             35..883
                     /locus_tag="U1087_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HEM4755716.1"
                     /translation="MNDFITKYLSQFNIEAIVTAGLNKVLSLVLLFVAFYIIKKIAKA
                     SVKKVLVPSLKVSTQDIGRQKTISRLVESILNYLLYFILIYCILSILGLPVSSLLAGA
                     GIAGVAVGLGAQGFLSDLVNGFFILIERQFDVGDVVKLTNGPITISGTIVSMGIRTTQ
                     VRDADGTLHFIPNRNILVVSNQSRGDMRAQIDIPLKFNTDLEQVYRVIEEVNLREISN
                     FDQITGVTVLGPQNAISGQFVFRVNLFVANGQQNKIYHQFFGFYQDALRQAGIDLPSS
                     GPTVLK"
     gene            894..1481
                     /locus_tag="U1087_001237"
     CDS             894..1481
                     /locus_tag="U1087_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4352 domain-containing protein"
                     /protein_id="HEM4755717.1"
                     /translation="MQTKDFVVENGQMYYKKKPLHKQPLFWTTIAGAILSFILGVTCF
                     IFMVGLSAANFDNWDTGSDGYIDETVEYTEYQVGDSVDFSDGLHVTVTSMGKDDSIEL
                     VDSYYSTAYVVEMEVENSTAKELYFDEYYFSLMDPVSQIPFTLDLRTYDVNLVEKLKP
                     GEKVQVKLIYGIDNETNFGFTYEDAMWTELVAEGI"
     gene            complement(1705..3051)
                     /gene="gdhA"
                     /locus_tag="U1087_001238"
     CDS             complement(1705..3051)
                     /gene="gdhA"
                     /locus_tag="U1087_001238"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011999806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HEM4755718.1"
                     /translation="MSNAKAYIQASFEAVKARNPHETEFLQAVEELFSTLEPVFEAHP
                     EYIEENILARIVEPERIISFRVPWTDKDGNVQVNRGYRVQFNSAVGPYKGGLRFHPTV
                     NQSILKFLGFEQIFKNVLTGLPIGGGKGGSDFDPKGKTDAEIMRFCQSFMTELQKHIG
                     PSLDVPAGDIGVGGREIGYMYGQYKRLRQFDAGVLTGKPLGFGGSLIRPEATGYGLVY
                     FTDNMLAANGKSFKDQTVLISGSGNVAQYAVQKATELGAKVISVSDSNGYIIDETGID
                     FDLLVDIKEKRRARLTEYAAEKATAKYFEGSVWNYDGKADIALPCATQNEINGEQAAA
                     LVKNGVYCVAEGANMPSDLDAIKVYKENGVLYGLAKAANAGGVAVSALEMSQNSLRLS
                     WTRDEVDGRLKDIMANIFNTAKETAEKYDLGTDYLAGANIAAFEQIADSMIAQGLV"
     gene            3283..5922
                     /locus_tag="U1087_001239"
     CDS             3283..5922
                     /locus_tag="U1087_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM4755719.1"
                     /translation="MKKKSVAIPVTLATGVLAVGTVGFQANQVSADTIVPTVSEEQAA
                     PVKVVSEQELASAQAAVTEAEQVAQAASNTATAKEQVAANAVQGVVEATDNLAKAEEL
                     VAKATEAEIEKTQTTIEELKETAASQETAQTLAEKELAEAKKAEKVPAEKVAQAQTAY
                     EKANSTLIAAQATATAATNQVAEAQAALATAEANVATTTNQVATAEQAVQAAQTALQT
                     AEQADKETAQQLAVAKENLAQAKQAQAVAEADLATKVAAVTTAESSVKEAQAAVAAAE
                     AYLASLVSDGTELTPLEFFGAEVEEPSEGNAMVGVSGTFYEPDQAAILARINEIRKEA
                     FDEGLVDRYVPLKWSTILEYTTQIRAAEAEYTLGHIRWTDKSIFTVDTDNPEIVAVRA
                     ENLAWNFGRSGEAMLTAIEQFYAEKEDFVNQTPDAVVGHYVSLINPNYTHTALSAFLS
                     AGNDGWTGVAQHFTVGDTSEEAVGLYGDAVQILEAKEDYLFDYELLTPEIVSDVNQNI
                     VLNVSAVFAPYDDYARVVSVYSGLTWESADENIAVVSETGVLTGISEGETSVYVTFPN
                     GKKETVKVKIVDIQKARDAVEQAKANLAKQEAELAKAKTARQAAQTSVENAKATVANR
                     QTTYNQLLSVESKVTKAQAELDKAQATLTDAKEKAAAAKQDLTTAEQTLADKEQAASV
                     AKQDLSVAQTAQTTAKNALSEAQASLSALQEITATKEAALKLAEANLAKTVADLKAAE
                     AYLASLLNAQENYRLAQQLLEEAKVAAAEALAQRDAALEAKQAAQTDFETALAKYKSM
                     RLAYEAQLALQKAAETKELKQAPVATPKPLSKPEVSQTSSKVTATQTKTLPATGSVES
                     MLGLTGLALLGTLALANQRRRRN"
     gene            6120..7058
                     /locus_tag="U1087_001240"
     CDS             6120..7058
                     /locus_tag="U1087_001240"
                     /EC_number="1.3.98.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011999807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate oxidase"
                     /protein_id="HEM4755720.1"
                     /translation="MVSTATTLGGFTFDNCLMNAAGVWCMTKEELDAVKNSKAGTFVT
                     KTATLDYRAGNPEPRYQNVPLGSINSMGLPNQGLAYYLDYLLELQETEPEHTFVLSLV
                     GMSPDETHEILRTVEASDFKGLIELNLSCPNVPGKPQIAYDFETTETILQEVFTYFTK
                     PLGIKLPPYFDIVHFDQAAAIFNQFPLKFVNCVNSIGNGLYIKDESVVIKPKNGFGGI
                     GGEYIKPTALANVHAFYQRLKPEIQIVGTGGVLTGRDAFEHILCGASMVQVGTTLQKE
                     GVAAFERITAELQAIMAEKGYETIEDFRGKLQHLDD"
     gene            7391..8623
                     /locus_tag="U1087_001241"
     CDS             7391..8623
                     /locus_tag="U1087_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CapA family protein"
                     /protein_id="HEM4755721.1"
                     /translation="MEKRANYIRRKRYASYRTKMHLFFICGLATIILAIIIVSEHLVP
                     RLNQASESMHSDNSVRIMAHGDLLYHLPILRGAEQPDGSYDFSENFTYVKPWIEQADF
                     AIADFEGTISPDVELAGYPLFNAPAIVANNIHDAGYDLVDLAHNHILDSHLSGLVSTV
                     NTFRDAGVDTVGVYAEGNRATAPLYIREVNGIRIAVLAYAYGFNGMEALLSQEEYDAY
                     LSDFDKEKMRAEIERAEKEADITIVMPQTGVEYQLEPTEEQTSLYHQMIDWGADIVLG
                     GHPHVVEPAEIIEKDGQRKLIIYSMGNFLSNQRIESMDDTPNSQWTERGVLMDVTIQK
                     VNGETTIQMARAHPSWVNRVWKGTYSPEGYELYGYQTYILEDWIAGGPYYGQLDAATQ
                     ARIEEAYQEMNAFVGLEW"
     gene            complement(8840..9688)
                     /locus_tag="U1087_001242"
     CDS             complement(8840..9688)
                     /locus_tag="U1087_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016182753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM4755722.1"
                     /translation="MKLHLGKTLRKVRQGKQISLCSLADEHLSKSQISRFERGESEIS
                     CVRLINILDKLNISLDEFLILHDSDYTNTESFAKLMQYIRKQYSSQNIDNIASLLSNS
                     SKYNLNPYVRTMVKSILHTLDSNIVPSDEELLQLTDYLFKIENWGYYEIILLGNCVRT
                     INYDSYFLLTKEMLHNYIYSSLNKTNKQIVTQLAINCFILSIDMEKFSNCSYLISEIK
                     KLLDNELNFYEQTVFLYATGYFEFKRSGKGIEKMKQAIQVLDLLGEDKLKLHYTSHFD
                     KLVNKK"
     gene            9770..9841
                     /locus_tag="U1087_001243"
     CDS             9770..9841
                     /locus_tag="U1087_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_128650800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SHP2/SHP3 family peptide pheromone"
                     /protein_id="HEM4755723.1"
                     /translation="MKKISKLIPILVLIMDIIIIVGG"
     gene            10286..11083
                     /locus_tag="U1087_001244"
     CDS             10286..11083
                     /locus_tag="U1087_001244"
                     /inference="COORDINATES: protein motif:HMM:NF024919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HEM4755724.1"
                     /translation="MVKVSLIKNDKLSNVQNITGFAPVIGYEPWALRTIESVKQSLVD
                     GQPILIRIHSALSYPTDSDRNTAKLDMESHAVLIIGYDDFKQEFDILDPWRVDWNGSK
                     GGLSTIKYEALPIVCVNATAEKSTRCSLIQKKVAVYTDKFYNTSVSIDFGFYVPKGYI
                     IDQKQSKFTEFDVTASYTLNGSVFTYHNIIRGEWWVGQTAKMEIPIGKDISEEVDVHF
                     AVSSKLVGDRPYHYEDIIKFEFNEMVDVTSSSQHKYKQEFDLNKVVV"
BASE COUNT         3451 a         1992 c         2499 g         3295 t
ORIGIN      
        1 gtttttttag gatgttttct gctataatta tctcatgaat gattttatta ccaagtattt
       61 gtctcaattt aatattgagg ccattgtgac agcgggtcta aataaggttt tatcgcttgt
      121 tttactcttt gttgcatttt acattatcaa gaagatagcc aaagcttctg tgaaaaaggt
      181 tttggttccc tctctaaagg tatctacaca agacattggt cgtcagaaga ccatcagtcg
      241 tctggtggaa agcatcttaa attacctact ctactttatc cttatctact gtattttgag
      301 tatcctcggt ttaccggtat ccagtcttct tgcaggagcc gggattgctg gggtagctgt
      361 tgggctgggc gcacaaggtt ttctctcaga cttggtcaat ggattcttta tcttaattga
      421 acgacagttt gacgtcggag atgtggttaa gttaaccaac gggcccatta ccatttcagg
      481 aaccatcgtt agcatgggaa tccgaacaac acaagtacgt gatgcagatg gcacattgca
      541 ttttattccc aatcgcaaca ttctagtggt atccaaccag tcaagagggg acatgcgtgc
      601 tcaaatcgat attccgctca aatttaatac cgatttggag caagtctatc gcgtaataga
      661 agaggtcaat ttgagagaaa tcagcaattt tgaccagatt acaggtgtga ctgtattagg
      721 tccccaaaac gctatttcgg gacagtttgt atttcgtgtt aatcttttcg tagccaacgg
      781 tcaacagaac aagatctatc atcaattctt tggtttttat caagatgctc tgcgtcaagc
      841 aggaatagat ttaccttcaa gtgggccaac tgttttaaaa taaggagttt attatgcaaa
      901 caaaagattt tgtcgttgaa aatgggcaga tgtattataa gaagaaaccc ttgcacaaac
      961 agcctctctt ttggacaacc attgctggtg ccattctctc cttcatccta ggagtaacct
     1021 gttttatttt tatggtcggt ctaagtgcag caaattttga taattgggat acaggtagtg
     1081 acggatacat tgatgagact gtggaataca cggagtatca agttggtgac tcagttgatt
     1141 tttctgatgg tcttcatgta acagtaacat ctatgggcaa agacgatagc atagaactag
     1201 tggatagcta ctacagcaca gcttatgttg ttgaaatgga agttgaaaat tcgaccgcaa
     1261 aagagctcta ttttgatgaa tactatttca gtctcatgga tcccgttagt cagattccct
     1321 ttaccctgga tttgcggacc tatgatgtga atctagttga aaagctgaag ccaggagaga
     1381 aagtacaagt aaaacttatc tacggtatag ataatgaaac aaactttggt tttacctacg
     1441 aagatgccat gtggacggaa ttagtcgcag aaggtatcta attgctgtag aaaaagtttt
     1501 aaatattgca caattttgcg ggtttatacg ccccttggtt cagattgttc gagttggtaa
     1561 tcgacttatc tattattttt acattttaaa aaggagaaca tgtttatcca ctgttctcct
     1621 cttcttttaa tgaaaaatac ccccaaaatt agcacgtcaa ttttgggggc gtttttatta
     1681 tagtttagta aactaaaagt aagcttatac caaaccttgg gcaatcatgc tatccgcaat
     1741 ttgttcaaag gctgcgatgt tagcaccggc aaggtagtct gtaccaaggt cgtatttttc
     1801 agcagtttct ttggctgtgt tgaagatatt tgccatgatg tctttaagac ggccgtctac
     1861 ttcgtcacga gtccatgaaa gacgaaggct gttttggctc atttcaaggg cagatacggc
     1921 tacaccacca gcgttggcag cttttgcaag accgtaaaga acgccatttt ctttgtaaac
     1981 tttgatagca tccaggtcag atggcatgtt ggcaccttca gccacacagt aaacgccatt
     2041 tttcacaagg gcagcagctt gctcaccgtt gatttcgttt tgagtcgcac atggaagggc
     2101 aatgtcagcc ttgccgtcgt agttccatac agaaccttcg aagtacttag cagttgcttt
     2161 ttctgcagcg tattctgtca aacgagcgcg gcgtttttct ttgatgtcca ccaagaggtc
     2221 gaagtcgata ccagtttcgt caatgatgta accatttgag tctgaaacag agatgacttt
     2281 tgcaccaagt tcagtcgctt tttgaacggc atattgggca acgttaccag aacctgagat
     2341 aaggacagtt tggtctttga aggatttacc gtttgctgcc aacatgttat cagtgaagta
     2401 aaccaaaccg taaccagttg cttctgggcg gatcaatgaa ccaccgaagc caagaggttt
     2461 accagttaag acacctgcat caaactggcg gaggcgtttg tattgaccgt acatgtaacc
     2521 aatctcacga ccaccgacac cgatgtcacc agcagggacg tcaagtgaag gtccgatgtg
     2581 tttttgcaat tcagtcatga agctttggca gaagcgcatg atttcagcat cagtttttcc
     2641 tttaggatca aagtctgaac cacctttacc accgccgatt ggaagaccag tcaagacgtt
     2701 tttgaagatt tgttcaaaac cgaggaactt caagatggat tggtttacag ttgggtggaa
     2761 gcgaagaccg cctttgtaag gacctacagc tgagttgaac tgaacacggt agccacggtt
     2821 gacttggaca tttccatctt tatctgtcca tggaacacgg aagctgatga tacgctcagg
     2881 ctcaacgata cgggccaaga tgttttcttc gatgtattct gggtgtgctt caaaaacagg
     2941 ctcaagtgta gagaagagct cttctacagc ttggaggaat tctgtttcat gtgggttgcg
     3001 ggctttgact gcttcaaaag aagcttggat gtaagctttg gcatttgaca tgggatcacc
     3061 tgatttcttt tttatttatt aaattgtctg acaatttaat ttatctgata attattatag
     3121 caccatgatt tttaaatgta aagaaaaaaa tgataatttt tctaaacttt ctgagcaagt
     3181 tgtgagtaga taaaaagtag actttcttta catacgaaca ttgacaaatg aggaatgata
     3241 gtataatata aaagttgtaa gtaaaatata ggggtaatat atatgaaaaa gaaatctgtt
     3301 gctattccag taacgcttgc tacaggtgtt ttagctgttg ggacagttgg ttttcaagca
     3361 aaccaagtca gtgccgatac tattgttcct actgtctcag aagaacaagc tgcaccagta
     3421 aaagttgtta gtgagcaaga gcttgcaagt gcacaggcag ctgtgacaga agctgagcaa
     3481 gttgcccaag ctgcttcaaa tactgctacg gctaaggaac aagttgctgc taacgctgtt
     3541 caaggcgttg tggaggcgac tgataatcta gcaaaagctg aagagcttgt agcgaaggct
     3601 actgaggcag aaatcgaaaa gactcagact actatagaag agttaaaaga aacagctgcc
     3661 agtcaagaaa cagctcaaac tcttgctgaa aaggaactgg ctgaggctaa gaaggctgaa
     3721 aaggttccag ctgagaaggt ggctcaagca caaacagcct atgaaaaagc taattctaca
     3781 ttaattgctg cacaagctac ggctactgca gcaactaacc aagttgccga agcccaagct
     3841 gctcttgcaa cagcagaggc aaatgtagcg acaactacca accaagttgc aactgccgag
     3901 caagcagttc aggcagccca aaccgctttg caaacggctg aacaagccga taaggaaacg
     3961 gctcaacaat tggcggtagc caaggagaac ttagctcaag ccaaacaagc ccaggccgtt
     4021 gctgaggctg atttggctac aaaagtagct gcggtgacta cggctgaatc aagtgttaaa
     4081 gaagcccaag cggcagttgc agcagcagaa gcatatctag ctagtttggt ttcagatgga
     4141 acagaattaa ctccgctaga attcttcgga gcagaggttg aagagccgtc tgaaggaaat
     4201 gctatggtgg gtgtgtcagg caccttctac gaacctgatc aagcagctat cttagctaga
     4261 attaatgaaa ttcgtaagga agcttttgat gaaggccttg tagatcgtta tgtacctctt
     4321 aagtggtcaa ctattttaga gtatacaact caaattcgtg ctgcagaggc agagtatacc
     4381 ttgggtcaca ttcgttggac agataagagc atctttactg tagacactga taatcctgaa
     4441 attgtagccg tacgtgctga gaatttggct tggaattttg gtcgatcagg cgaggcaatg
     4501 ttgactgcta ttgagcagtt ttatgcagaa aaagaagact ttgtgaatca gacgccggat
     4561 gcggtagtag gtcactatgt atcactaatc aatccgaatt acacccatac agccctatca
     4621 gctttcttgt cagctggcaa tgatggttgg acaggtgtgg cacaacactt tactgtaggg
     4681 gatacctcag aagaagcggt tggtttatac ggtgatgctg tacagatttt agaagccaaa
     4741 gaagattatt tatttgatta cgaattgctg acacctgaga tagtatcaga tgtcaatcag
     4801 aatatagtgc tgaatgtttc agcagttttt gccccttacg atgactatgc ccgtgtcgta
     4861 tctgtttatt caggactaac ttgggaatct gcagacgaga acattgctgt agtttcagaa
     4921 acaggcgtgc ttacaggtat ctcagaaggc gaaacaagcg tgtatgtaac cttcccaaat
     4981 ggcaagaaag aaacggtcaa agtcaaaata gttgatattc aaaaagcacg cgatgcagtt
     5041 gagcaagcta aagcgaattt agcgaagcag gaggccgaac ttgcgaaagc taagacagca
     5101 cgtcaagcgg cacagacaag tgtagagaat gcgaaagcta ccgttgcaaa tcgtcaaaca
     5161 acttataacc aattattatc tgttgagtct aaagtcacga aagctcaagc ggaacttgat
     5221 aaggctcaag ctactcttac ggatgcaaaa gaaaaagcag ccgctgcaaa acaagactta
     5281 actactgctg agcagacact tgctgataaa gaacaagcgg caagtgttgc aaaacaagat
     5341 ttatcagtcg ctcaaacagc acagacgact gcaaaaaatg ctttatcaga agcacaggca
     5401 agcctatccg ctttacagga aataactgca acgaaagaag cagctttgaa acttgcagag
     5461 gctaaccttg ccaaaacagt cgcagatttg aaagcagcag aagcttatct tgcaagctta
     5521 ctcaatgcac aagaaaacta tcgcctagct cagcagttgc ttgaggaagc gaaagtagcg
     5581 gcagcagaag ctcttgcgca acgtgatgca gctttggaag ccaaacaagc agcgcagaca
     5641 gattttgaaa ctgctctagc aaaatataag agcatgagac ttgcttatga agcacagtta
     5701 gctttgcaaa aagcggcgga aacgaaagaa ttgaagcagg ctcctgtagc gactcctaaa
     5761 ccattgtcaa aaccagaagt ttctcaaaca agtagcaagg taactgcaac tcaaactaag
     5821 actctacctg caacaggttc tgtcgagtca atgttaggat tgacaggttt ggcattgcta
     5881 ggaacattag ctcttgctaa ccagcgtaga cgtagaaatt aataacctag agagagttcc
     5941 agttggactc tctttttaaa atacgaacat tgacagcgat ttgcctcatc tcgagagaag
     6001 ctatgctata atgaaacaaa taaaaaagac gctctttgtt atgccaattg ggaaagccgt
     6061 cagtttttta tggctggttg acaatggttg gcagctattg agcgaaaata ggaggaaaga
     6121 tggtttcaac agcaacgaca ctcggtggat ttacctttga taattgtttg atgaatgcgg
     6181 caggggtttg gtgcatgacc aaggaagaat tggatgcggt taagaactcg aaggcgggta
     6241 cttttgtgac aaaaacagca accttggact accgcgcggg taatccagaa ccacgttatc
     6301 agaatgttcc gcttggttct atcaattcga tgggcttgcc aaatcagggc ttggcttact
     6361 atttggatta tctactagaa ttgcaggaaa cggagccaga acacacattt gttttatctt
     6421 tagttggaat gtctcctgat gagactcacg agattttgag aactgtagaa gccagtgatt
     6481 ttaaggggct gatagagtta aatctttctt gtcccaatgt ccctggaaaa ccgcagattg
     6541 cctatgattt tgaaacgaca gaaaccatct tgcaggaggt cttcacttac tttaccaaac
     6601 cactcggtat taagttacca ccttatttcg atattgtgca ttttgaccaa gcagcagcga
     6661 ttttcaacca gtttcctttg aagtttgtca actgtgtcaa ttcgattgga aatggtctct
     6721 atatcaagga tgaatcagtt gtcatcaagc ctaaaaatgg ttttggtggt atcggtggag
     6781 agtatatcaa gccgactgct cttgccaatg tccacgcttt ttaccagcgc ttgaaaccgg
     6841 agattcagat tgttgggact ggtggcgtct tgacaggtcg ggatgccttc gaacacattc
     6901 tctgtggtgc cagcatggtt caagttggaa caaccctgca aaaggaaggt gtggcagcct
     6961 ttgaacgcat tacggctgaa ttgcaggcca tcatggctga aaaaggctac gagaccattg
     7021 aagattttcg tggcaagcta cagcacttag atgactgaga tcatctgttg aagatataaa
     7081 aagaagctaa cattgtaccg ttcccccaga tagtctttta gggagttagg aaggggtaat
     7141 gttagctctt tttaaatggt ctgtgaagat cggtctgata atcgtttgag gaatggaata
     7201 catagtcaga aacatatatt tgtgagatgg aattctgatt ttatttagat tttttagcaa
     7261 aaatgtcgta tactaatatt ataatctcta tttataagtg atgtactttt atggaagaaa
     7321 tagttttttg agggactact gactgtattt tgaacaaagg ttcttaagta gggagtatga
     7381 gggtaaaggt atggagaaaa gggcgaacta tattcgcaga aaacgatatg cgtcctatcg
     7441 gacaaagatg catttgtttt ttatttgtgg cttagcaact attatcttgg cgattattat
     7501 tgtaagcgag cacctagttc ctaggctgaa tcaggcatca gaatcaatgc attcagataa
     7561 ttctgttcgc atcatggcgc atggggattt gctctatcac ttgcctattc ttcgaggagc
     7621 agaacagcca gatggaagtt acgatttttc tgagaatttt acctacgtaa agccctggat
     7681 agaacaggct gatttcgcta tcgcagactt tgaagggacc atttccccag atgtcgaatt
     7741 agcaggttac ccacttttta atgcgcctgc cattgtcgcc aataatatcc atgatgcagg
     7801 ctacgatttg gtggacttag cccacaatca tatcttggac tcacatcttt ctggattggt
     7861 ttccactgtc aatacattta gagatgcagg tgtggataca gtcggtgtct acgccgaagg
     7921 caatcgtgca actgcaccac tctacattcg ggaagtcaat ggtatccgta tagctgtcct
     7981 agcctatgct tacggtttca atgggatgga ggctttgctg agtcaggagg aatatgatgc
     8041 ctatttatcg gattttgata aagaaaagat gcgggcagag attgagcgag ctgagaaaga
     8101 ggcagatatt accatcgtca tgcctcagac gggtgtggaa taccagttgg agcctacgga
     8161 ggaacagacc agtttgtacc atcaaatgat tgattgggga gcagacatcg ttcttggtgg
     8221 gcatccgcat gtagtcgagc ccgcagagat tattgaaaaa gatggtcaga gaaaattgat
     8281 tatctattcg atggggaatt tcctgtccaa tcagcgtatt gagagcatgg atgacacacc
     8341 aaattcccag tggaccgagc ggggtgtgtt gatggatgtg accattcaga aggtcaatgg
     8401 tgagaccacc atccagatgg ccagggctca tcctagctgg gtcaatcgtg tctggaaggg
     8461 gacctattcg ccagagggct atgagctgta tggctaccag acctatatcc tagaggactg
     8521 gatagcaggt ggtccctact atgggcaatt ggatgcggct actcaggcac ggatagagga
     8581 ggcctatcag gaaatgaatg catttgtagg attagaatgg taaggagaag acgatggaag
     8641 ttggattgat tgcgaccgaa gtaagagttc ggtaattgat aaaacagaat atagagaaag
     8701 ccttggaagt agttgtttcc aaggcttttt atctatcctc agcagtagat gggtcaaagg
     8761 gagaggttga agggaaggat gacttctcat tgagacaccc ttgatttgta aatcgttaaa
     8821 ttttagagaa atattcccct tattttttat ttaccagttt atcaaaatgg ctagtatagt
     8881 gtaattttaa cttgtcttct cctaaaagat cgagcacttg tatggcttgt ttcatttttt
     8941 caattccttt acctgatcgc ttaaattcaa agtagccagt agcataaaga aaaacagttt
     9001 gttcataaaa gtttagttca ttgtctaata atttttttat ctcactaatc aaataggaac
     9061 aatttgaaaa tttttccata tctatgctaa gaatgaaaca atttatagct agctgagtaa
     9121 cgatttgctt attggtttta tttaatgaag aatagatgta attatgtagc atttcttttg
     9181 ttaataggaa gtaggagtcg taattaattg ttcgcacaca gttacctaat aaaatgattt
     9241 catagtaacc ccagttttca attttaaaga gatagtctgt tagttgaagc aactcttcat
     9301 ctgatggaac aatgttactg tctagtgtat gtagaatgga ctttaccata gttctcacat
     9361 acggatttaa attatatttt gaagagtttg aaagtaatga ggctatatta tctatatttt
     9421 gcgatgaata ttgtttacga atatactgca ttaatttagc aaatgattct gtgttggtat
     9481 aatcactatc atgaagaata agaaattcat ctagagaaat gtttaatttg tctaaaatat
     9541 tgataagtcg aacacaagat atttctgact ctccacgttc aaaacgagat atttgtgatt
     9601 tagaaagatg ctcatctgct agagaacata gactgatttg ttttccttgt cttacttttc
     9661 tcaaagtttt tccaagatgt aatttcatct gatttcccac tttcccaaca aaaaattgaa
     9721 ctagttttat ttattgtaca ataaataaaa acggaaagga agtccaagta tgaagaaaat
     9781 atcaaaactt atcccgattt tggtattgat tatggacatc attatcattg ttggtgggta
     9841 aatcgattag gtgtacaccc aattctttag gcatatgcct aaagaattgt tgcctattag
     9901 gtaataagga gacgtgtact tatcttatcc aataaatagt gaggaggtga tacaaatata
     9961 caagtaataa atggagtaga aagctgaaag agaattatag tagtaacact ttaatttttc
    10021 tatattaaat taaataaagg gcagttgtta gattataaat aaaaaatagt ataatagatc
    10081 catagattat aggatttttt atagctcaag tctttattat tattgcagga atattgctag
    10141 acagggttta aataatcttt agttttattg tagaatctgt tatagataat ttactaaaaa
    10201 atattattta acagaaaaaa tagattgaca aaatctatca agtatgacgc tatgtatgcg
    10261 aaaaaattta aaggaggatt ggctaatggt taaagtatcg ttgataaaaa atgacaaatt
    10321 gtcaaatgta caaaatataa caggttttgc acctgttatt gggtatgagc catgggcttt
    10381 aaggacgata gagagtgtta agcaatcatt agtagatgga caacctattt taatccgtat
    10441 tcattctgca ctatcttatc ctacagatag tgatagaaat acagctaagt tagatatgga
    10501 atctcatgcg gtattaatta ttggatatga tgattttaag caagaattcg atattctaga
    10561 cccttggaga gttgattgga acggttcaaa agggggactt tcaaccatta aatacgaagc
    10621 acttcctata gtatgtgtta atgcgacggc tgaaaagagt actcgttgtt cactaattca
    10681 gaagaaagta gctgtgtata cagataagtt ttataatacc agcgttagta ttgattttgg
    10741 attttatgtc cccaaaggat acataataga tcaaaaacaa tctaaattta ctgagtttga
    10801 tgtaactgca tcttacactt taaacggatc agtattcact tatcataata ttattcgtgg
    10861 tgaatggtgg gtagggcaga ctgcaaaaat ggaaattccg attggtaagg atatttctga
    10921 ggaagtagat gtgcattttg ctgtatcatc taaattagtg ggagatagac cataccacta
    10981 tgaagatatt ataaaatttg agtttaatga aatggttgat gtgactagta gctctcagca
    11041 caaatataag caggaatttg accttaataa ggttgtagtt taagtaatta aagatatcat
    11101 atttgtatat gatatcttta actgtataga ggtgaagata tgtttagaaa aaaattaata
    11161 gaagatattg aaaatactaa tttgctattt tctaatttaa aatgggcttt acctattgat
    11221 ggattagtta gaactcc
//
LOCUS       DASFRC010000069        11164 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.069, whole genome shotgun sequence.
ACCESSION   DASFRC010000069 DASFRC010000000
VERSION     DASFRC010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 11164)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11164)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11164
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.069"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..4286)
                     /locus_tag="U1087_001245"
     CDS             complement(<1..4286)
                     /locus_tag="U1087_001245"
                     /inference="COORDINATES: protein
                     motif:HMM:NF019216.1,HMM:NF037372.1,HMM:TIGR01168.1"
                     /note="The YSIRK form of extended signal peptide directs
                     nascent proteins to the cross-wall site, while signal
                     peptides lacking YSIRK direct proteins instead to the cell
                     pole. A large fraction of YSIRK proteins are surface
                     proteins anchored by sortase-mediated processing of a
                     C-terminal LPXTG motif; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YSIRK-type signal peptide-containing protein"
                     /protein_id="HEM4755725.1"
                     /translation="MERKQRFSIKKLSIGVVSICIGFAFLTQGNSTVAAAENSVEVII
                     SNATGEEETIPTQPTETPNNRESIQNTETTTQEEVTVNNTVEGQTDTEKSTRTEQAVP
                     ESTTSQNDHLANTEDTTTTSSSTESSVNEVEFPTETTALSSPESSPKIETIDASLKAE
                     QPNTSEGTTALRAATNTSPTTTVTGNDTAIQAIENGSITPSKTIASLNAEEKQTLNNL
                     ILTNFETSADKVALLDVVKPKESLSISDLTKYFVPLIKQLKSDPNYKHLTDQERSAEA
                     TKLALIEANKNLYEDASIEALAPEAKNTFQQLLAFNNGQLLTEKSGLTVETLKNNLSQ
                     LYRGVLYLQQQYSFEKDLPQTLVFTPHTIGNIQADQTSAYDRLMAYGGHITDKRSLAL
                     NLNQIQFNNRMIGQYTGTKSTAELVEKIAQSKGKDVNSYFTEQSQALIGTSPNISIFE
                     LLKTNKPEYILPVLSQGRGVYLAGTSNSLTLGLLDSYTDLYPELKNYSKERGVQQPTS
                     TFFEKILTYQENWLTFLNSAKKDSTTIPFTLAVDTMNVYNETTKAHTWSPNEGTSAHS
                     AVLNFFSPMNLWENYVRSGVGLGGVANGENMIKAYETRFMHSNLSGVALFTHEMTHTN
                     DEARLFGGTYRKEGRRAGQGPEVYARGLFEVIDNTQNGVPGEYKPVFNLNTALTIADS
                     PNRTQALTPQTSTEKLANYTKNLVDLVAYLEAVEARVALKSLAENELATYFNKVVQVP
                     RNTTSNTSTTTTSLPSTNDAFLPYGQLTVASLTKPTSINDLVDQDAVSGQFIPRGISP
                     ILTELSHNQYDHVPLLESFYGASEAPSGNNTVGDISFKRHAYEILAWKGWDAFISYIS
                     NRYNSDSEAFKAILGNEYSDWASFKKAQYKRLEDKEPVNQLWQTSQLEKELETAIKAD
                     LAVLTTYRNSINSLLNSRSTVTQTQLDQAAQKASVARLATNVRKVKLDILNKALQFNN
                     LEASIFEAPKQSDIIYVKNGGNGQGLTEDTPMGSLAEALQKATDGTIIKLVGNATERT
                     PLVINKAVTIESDSSENAIIFNESIQISNNVTLRNLSIHALTESNVPGNIYIDGQVTM
                     DHVSTLISNRQTDKRPSLIIGSSADTTDKRESSLKILNTNETVFDKMTVQNAADIAIA
                     NGTQIKNGVEVTTPSPVTITSESNQVNKFQAPETNQVTLIFNNSKASNVELKNISNLI
                     VKNNSFISLNSQSLNPIQQALTVETGSQINLGDLEARFQSLKGDGILGFTDKGQLALQ
                     DLDGQATIQFKRKDMNFSESDGKTFVTIASKQSGLSVKLIPLDEILKMDKDGNYIYHQ
                     PYSAGYYFESVELDKILPSEVEDLLPEDKESPNQAIPQPEAITEIVVDGDGRWVFDRW
                     ELDSESTAKQHFYTGYWRYESSPQTTVRFEDVPFTTIYQADENRTAGEKET"
     gene            4443..5354
                     /locus_tag="U1087_001246"
     CDS             4443..5354
                     /locus_tag="U1087_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019783158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS982 family transposase"
                     /protein_id="HEM4755726.1"
                     /translation="MQSQHYYLANPNQTQVIFSKILTQVLALYERFVPHEVRNRRNIH
                     LQKQSDVVVIASYLWAIQEGRRTASAISRAIRHNLFPDNFPEHSRFCRICQNLAQSIQ
                     RMRYFMVLDLCQTCSFGLIDSFPCALCHPIRNMRATLLSEVADIGYNATKKIHYYGLK
                     FSVLVSDSGFPIDYVITPASIYDGDVALELLENSPFPIVYGDKGYVDRQTKAALVDCG
                     IQLISQLRKNMMGYSWLENYKISRLRKTVETVFSSLEQFGMEALRCRNIQALKFKTEA
                     ILLIYSLLLKSSHTEFGISLKYSLAYA"
     gene            5520..10892
                     /locus_tag="U1087_001247"
     CDS             5520..10892
                     /locus_tag="U1087_001247"
                     /inference="COORDINATES: protein
                     motif:HMM:NF019216.1,HMM:TIGR01168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YSIRK-type signal peptide-containing protein"
                     /protein_id="HEM4755727.1"
                     /translation="MNLHFLQKKQHFGIRKFSIGVVSVALAISFSVAGGQVAAAQEAS
                     QTPVSSQQTSQAVTDQANQLQETNEVTVQIPETVGSSLNQATQENPAQESQLVEVEPA
                     IQKEVVSQDISAPQAALSAEAGQEQTAEEQSNTAGDESTLTVENSHQIIEQVEPKSIQ
                     TAQEPAGSTDEVTQPVQPTETATVEEVVQPVLRSARRARSVAAQELAKLPLDAQGQLM
                     PSVNGKTVHQYQVVYSDGSSQLVAAQTTDQTQANSDISNKVNQIKQELSTITYDSLYP
                     SLNNRERIYDKTEMDLIIAKENPGRTLTEEEKIVLRNKYYMDQLDMRDSFARVQGDLE
                     TILTGIFEKSKQVDIETIKTNKEKVLLGLTYLDRQFSFKFGNYQAKDFILYHPEVFGG
                     TGDVLTNLYTIGSQNYQDLLLAQSATTFKNKVARQLGQTDVFSFVEKGLLIFDKDKTA
                     SEWLKEESKALIVEAANSYGLTTSLYDKLKSDTRLNNHLLPLLSLPSSSIYALSTSNT
                     VTYGLTETYLDQAPANQEFEQKLSDYAHHQQEFLNFWYRMTEKKQEFTNYSPIIVVDT
                     VQKYGPSRNASELYSPKFGSNVLKGVREFIRPLNLYAKFAFAGGQANGTNSMNNFLYK
                     SLTDDGHAVYTHELTHMLDKTIWLNGFGRRTGQGAEVFARGLFESLNMSASSISDPIF
                     NLNTAYQLGDNRTQNASPERFQTSEDLKTYMQGILDVLYTLDYAEAQSILKKTPEERA
                     VLLNKISLIPNPANNGVGNTTETVNSIDTTLAASLTSVSDFVDQSLISGRYKFDGLNT
                     RGTARTNSYYTIPLFEPIYAALQNDTGSGGDISFKRNAYEILGEYGYENGMVAYLSDQ
                     HANDQAALNAIMPEYDGNLAAFKKAMFARRIDKVNQLNPTAVATDFSAIQSLMDQAVT
                     KDLAQLQTNQARNTFLSQNVNAVRELKNQIFQEYLAMTNDFQSSIYKEKEASRTFYVT
                     NGQESSTEGAGTEANPYHSLSYALQQASDGDVIKLVRNVTHRQDAPFVINKAVTIDGQ
                     GHTLTFRGPDLELGAAVTFTNMTLNMIPSGSHQPTIYLNGYQATFDAVSTTVNQLQDK
                     LRPTIVAGARTGEATGDHARLLVVNGDSNTRFRQIFAGNADSSSSIPVTITIDSEFAG
                     VDEGIDFGGQHDNVTYGRVELISRSTKVKEVVATNSMDNQVTIKAVRLYGAHLTDIQD
                     LHLAENADVTLSSQVDSIVGQVNIESRSKLQLDAGAVLQVGGLSGEGILSLLADNVLT
                     VTGDLTGTVQIEIRDFEQNLSKQVGKILVTIEGLTEQADAVRLVNAYGQYALVEENGH
                     YRLASQDQQPQTHTLTLRFIQAEQVLKSEQVQVVDGQSLANVEAYLPQAATGTYQLAP
                     TFDPSVLTGISASQTIDIPVVLVIPATPILSFDKTSIQEMTLVQGLDKSSYQEGEILD
                     LTGVRVRLVDQQGIALVIDATRFTEYGVSANPVGTPLLSSQQELTLTLGNHVLSLPIQ
                     VQAQLPSKASRFQPLVSGEVIVWPSDSNQTQKSQVLQAIRLPNEAGSVNLEVVGVLPT
                     ASGDYSVTIRVTYDDQSQEEVVVPLHILSIDKGSGVTHELPIGVLSKSDRYQPQVTGE
                     ARVLPASSSDDATAEIVKQISLPAEAGQFDVVVVTPIPQSSGDYSMIVRVVYDDRSQD
                     EIVVPLHIFKMENGKGVTHELPIGVLPPLETTKGDGVTHELPIGVLPSLEVALEKGLG
                     ENSPKPAAKEMAVSVSVVGQQKFAKGQLPKTGDRNNLLLVGVMLAIFNLIFWMPGKKP
                     HQVEEK"
BASE COUNT         3147 a         2108 c         2445 g         3464 t
ORIGIN      
        1 gtttcttttt ccccagccgt tctgttttca tcggcttgat agatagttgt aaatggaaca
       61 tcttcaaaac gaacggttgt ttgaggtgaa gattcgtagc gccagtaacc tgtatagaaa
      121 tgctgtttag cagtactttc agaatcaagt tcccatctgt caaagaccca tcttccatcc
      181 ccatctacaa ctatttcagt aatcgcttct ggttgtggaa tcgcttgatt aggactttcc
      241 ttatcttctg gcaataaatc ttcgacttca cttggcaata tcttatcaag ttctacggat
      301 tcaaaataat atcctgctga gtaaggctga tgatagatgt aatttccgtc tttgtccatt
      361 ttaagtattt catccagcgg tattagcttg actgaaaggc cactttgttt agaagcaata
      421 gtgacaaatg tcttaccgtc tgattcagag aaattcatat ctttgcgttt aaactggata
      481 gtcgcttgtc cgtctaaatc ttgtaaggct aattgtccct tatctgtgaa tcctaatatt
      541 ccatctcctt taagtgattg gaaacgagct tctaaatctc ccaaatttat ttggctacca
      601 gtttctactg ttaatgcctg ttggattgga ttgagtgatt ggctgtttag ggagataaag
      661 gaattgtttt ttactatgag atttgagatg ttttttaact ctacattact tgctttgcta
      721 ttattaaaaa taagggttac ctgattggtt tcaggtgctt ggaatttatt gacctgatta
      781 ctttcggaag tgattgtaac aggagaaggt gtagtcactt cgacaccgtt tttaatttgt
      841 gtaccatttg caatcgcaat atctgcggca ttttggacgg tcatcttatc gaaaacagtt
      901 tcatttgtat ttaaaatttt caaactggat tcacgcttat cagttgtatc tgctgatgaa
      961 cctatgataa gactagggcg tttatcagtt tgacgattgg atataagagt ggatacatga
     1021 tccattgtca cttgaccatc tatgtagatg tttccaggga cattgctttc tgttaaagca
     1081 tgaatactta aattacgtag ggtaacgtta tttgaaattt gaatactctc attaaaaata
     1141 atcgcatttt cactgctatc actctcaatg gtaactgctt tattgatgac gagtggagtt
     1201 cgctcggtgg cattgccgac cagtttgatg atagtaccat ctgtagcttt ctgcaaggct
     1261 tcagccaaac ttcccatagg ggtatcttct gtcagtcctt gtccgtttcc gccatttttt
     1321 acatagataa tgtcagattg ttttggtgct tcaaagatac tagcttctag attgttaaac
     1381 tgtagagctt tgtttagaat atctaattta actttacgga cattagttgc taaccgagca
     1441 actgaagctt tttgagctgc ttggtctaac tgcgtttgag taacagtgga acgactgtta
     1501 agtagactgt taattgaatt tcgataggtg gttaatactg ctaaatcagc ttttatagct
     1561 gtttctaact ctttctccaa ttggctagtt tgccacaatt gattaaccgg ttccttatct
     1621 tctaaccgtt tatattgcgc ttttttgaaa ctagcccaat ctgaatattc gtttcctaag
     1681 attgctttaa aagcttctga gtcgctattg tatctgttac taatgtaact tataaaggca
     1741 tcccagcctt tccatgccaa tatttcatat gcatgtcgct tgaaagagat atctccaacg
     1801 gtattattgc cacttggagc ttctgaagca ccgtagaagc tttctagaag tgggacatga
     1861 tcatattggt tatgacttaa ttccgttagg ataggggaaa ttccacgagg gataaactga
     1921 ccactgactg catcttggtc aaccaaatca ttgatgctag ttggtttagt aagtgaagca
     1981 accgtcaact gcccataggg gagaaatgca tcgttggtag aagggagact ggtggttgtc
     2041 gtgctagtgt tagaagtggt attgcgaggt acttggacga ccttattgaa ataagtagct
     2101 aattcattct ctgctaggga ttttaaagca accctcgctt caacagcttc caaataagcg
     2161 actaaatcaa caagattttt tgtgtaattt gctaactttt ctgtagaagt ttgaggtgtt
     2221 aatgcttgag tacgatttgg actgtcagca atagtgagag cggtattcaa attaaagaca
     2281 ggtttgtact caccaggaac accgttttgt gtattatcaa ttacttcaaa taaacctcgt
     2341 gcatacactt caggtccttg accagctcgt cgaccttctt ttcgataagt tccaccgaac
     2401 aacctagcct catcgtttgt atgagtcatt tcgtgagtga acagtgcgac acctgaaagg
     2461 ttactgtgca taaagcgtgt ctcgtaggct ttaatcatat tttcaccgtt tgcaacacct
     2521 cctagtccaa ctcctgaacg aacataattt tcccagagat tcattggaga gaagaagttg
     2581 agtaccgcag aatgtgcaga agtgccttcg ttaggtgacc aagtgtgtgc tttggtggtc
     2641 tcgttataga cattcatcgt atcgactgct agtgtaaatg gaatagttgt actatctttt
     2701 ttagcagagt taaggaaagt caaccaattt tcttggtagg taaggatttt ttcgaagaaa
     2761 gtagatgtag gttgttgtac cccacgttcc ttgctgtagt ttttcaactc agggtacagg
     2821 tctgtatacg aatctaaaag cccaagagtc aaactgttgc tagtacctgc aaggtaaaca
     2881 cctctacctt gagagaggac agggaggata tattctggtt tattggtttt taataattca
     2941 aagatggaga tgtttgggct tgttccaatc aaagcttggg actgttctgt aaagtagcta
     3001 tttacatctt ttcctttaga ttgagctatt ttttcaacta attcagcagt agatttggta
     3061 ccagtgtatt gaccaatcat acggttattg aattgtattt gattaagatt taaggcaagt
     3121 gaccgtttat cagtaatgtg accaccataa gccatcaatc ggtcataggc acttgtctgg
     3181 tcagcttgga tattaccgat tgtgtgggga gtaaagacaa gagtttgtgg taaatctttt
     3241 tcaaaggagt attgttgctg gaggtatagg acaccacgat acagttgact aagattattt
     3301 tttagagttt caactgtaag ccctgatttt tccgtaagta gctgaccatt gttaaatgca
     3361 agtagttgtt ggaaagtgtt tttcgcctca ggcgcaagag cttcaatact cgcatcttcg
     3421 tagaggtttt tgtttgcttc aatcagcgct aattttgttg cttcagcgga cctttcttgg
     3481 tcagtcaagt gcttgtaatt aggatccgac tttagttgtt ttataagcgg aacaaaatat
     3541 tttgttaaat cagaaatact taaactctct ttaggtttta caacatctag taaagctact
     3601 ttatcagcgc tagtttcaaa gtttgtgaga ataaggttgt taagagtttg tttctcttca
     3661 gcgtttagag atgctatcgt tttagacgga gtgatgcttc cattttcaat tgcttggata
     3721 gcagtatcat ttccagtcac agtagttgtg gggcttgtat tggttgcggc acgaagggct
     3781 gttgttcctt cgcttgtgtt aggttgctct gcttttaaac tggcatcgat agtttctatt
     3841 ttaggggatg attcagggga ggaaagagca gtagtttccg ttgggaactc tacttcattt
     3901 actgagctct ctgttgaaga tgaagttgta gtggtgtctt cggtatttgc aaggtggtca
     3961 ttctgactag tggtagattc aggtaccgct tgttccgtac gggtgctttt ttcggtatca
     4021 gtttgtccct cgaccgtatt attcacggtg acttcttctt gagtagtagt ttccgtattt
     4081 tgaatgctct ctctattgtt aggagtttcc gtaggttgag tagggattgt ttcctcttcg
     4141 cctgttgcgt tgctaataat aacttcaaca ctattttcag cggctgctac agtactgttt
     4201 ccttgagtaa gaaatgcaaa tccgatacaa atggacacaa caccgattga taattttttt
     4261 atagaaaatc tttgtttccg ttccatattt tccccttttc tagttcatgt agttatctag
     4321 aatataacag aaattaagcg ttttcgcaag tagtatagta cccgttgtgc tagttaattt
     4381 tagccaacta aaaaaacttt gcgtatcata aactcaaaat aaccacgaaa tgagggaata
     4441 atatgcaaag ccaacattat tatctcgcaa atcccaatca aacacaagtt attttttcaa
     4501 aaatcttgac tcaagttctc gctttatatg agcgatttgt tccccatgag gttcgaaatc
     4561 ggcgaaacat ccacctacaa aaacagtctg atgtcgttgt tatcgctagt tatctttggg
     4621 caattcaaga gggccgcagg acggcaagtg ctatttcccg tgcgattcgt cataatctct
     4681 tccctgacaa cttcccagaa cactcacgat tttgccgtat ctgtcaaaat cttgctcaaa
     4741 gtattcagcg tatgcgctat tttatggtct tagatctttg tcaaacctgc tcgttcggct
     4801 tgattgacag ctttccttgt gccctatgtc accccattcg caacatgaga gctacattgt
     4861 tatcagaggt ggcagatatt ggctataatg cgactaagaa aatccattat tatggcttga
     4921 aattttcagt tcttgtcagc gatagtgggt ttcctattga ttatgttatc acacccgcat
     4981 ctatttatga tggcgatgtt gctttggagc tacttgaaaa tagcccattt ccaatcgttt
     5041 atggagataa aggatatgtg gatagacaga caaaggcagc gttagtagac tgtggtatcc
     5101 agttaatttc tcaactcaga aaaaacatga tggggtattc gtggctagaa aattacaaaa
     5161 taagtcgatt gaggaaaaca gtggagactg tattttctag tttagagcag tttggaatgg
     5221 aggctttacg ttgtcgaaac attcaggcgc tcaaatttaa gacagaggca atattactta
     5281 tttattctct tttgcttaaa agcagtcata ctgaattcgg tatcagttta aaatattccc
     5341 ttgcttacgc ttgattaact agcacaacgg gtaaaaaata atagttttta ttggtttcct
     5401 gacggttatt gttgggaaat ttttcgttgt gataaatttg tcagcatttt ctttgcattg
     5461 cattcttttt atttatataa ttgtagtata ttttttattt ggttcaaaag gagattttga
     5521 tgaatttaca ttttttacaa aagaagcagc attttggaat ccgtaagttt tccatcggtg
     5581 tcgtatctgt tgccttggca attagcttta gtgttgctgg agggcaggtt gcggctgccc
     5641 aagaggcaag ccaaactcct gttagtagcc agcaaactag tcaggcagtg acagatcaag
     5701 caaatcaact gcaggaaacc aatgaggtaa ctgttcaaat tccagaaact gttggttcct
     5761 cattaaacca agccacacag gagaacccag ctcaagaaag ccagcttgtg gaagtagaac
     5821 cagctattca gaaggaagtg gtttctcaag atatttcagc accccaagca gcactttcag
     5881 cagaagcagg gcaagaacag actgcagaag agcagtcaaa tacagctggt gatgagagca
     5941 ctctcacagt cgaaaattct catcagatta ttgagcaagt agaaccaaaa tctattcaaa
     6001 cggcacaaga accagcgggt tcaacggacg aggttactca accagttcag ccaactgaga
     6061 cagcaacagt agaagaagtc gttcagcctg tgttacgttc agcacgaaga gcacgcagtg
     6121 tggcagctca ggagttggct aaactgccac tagatgccca aggtcaactg atgccttcgg
     6181 ttaatggtaa aacagttcat cagtaccaag tagtttattc tgatggcagt agtcagcttg
     6241 tagctgcaca aactacagat caaactcagg caaattcaga tatttccaat aaggtcaacc
     6301 aaattaagca agagttatct acaatcacat atgattcgct ttatccgtct ttgaataatc
     6361 gtgagagaat ttacgataag acggaaatgg accttattat tgctaaagaa aatccaggtc
     6421 ggacgttaac ggaggaagaa aagattgttc ttcgcaacaa atattacatg gatcaactgg
     6481 atatgcgcga tagctttgcg cgtgttcagg gggatttaga gaccatccta acggggattt
     6541 ttgagaaatc aaaacaagtt gatattgaaa ctatcaaaac aaataaagag aaggtcttac
     6601 tcggtttgac ttatcttgac cgtcagtttt ctttcaaatt tgggaattat caagccaagg
     6661 atttcattct ctaccatcct gaagtttttg gtggaactgg ggatgtgctg accaatctat
     6721 acactattgg tagtcagaac tatcaggatt tattattggc tcaaagtgca acaaccttta
     6781 aaaataaggt ggctagacag cttggacaaa cagatgtatt tagctttgtg gaaaaaggat
     6841 tgttaatctt tgataaggac aagacagctt ctgaatggtt gaaagaggaa tcgaaggcgc
     6901 tgattgttga ggcagcgaat agctatggac ttacaacatc tctttatgat aaattgaaat
     6961 cggatactag attaaacaat catttattgc cacttcttag tttaccgagt tcgtctattt
     7021 atgcactatc tacttctaac accgtaacct atggtttaac agaaacctat ttggatcagg
     7081 cacctgctaa ccaagagttt gaacaaaaac tttctgacta tgctcatcac cagcaagaat
     7141 ttttaaactt ctggtatcgg atgaccgaga agaagcaaga gtttacgaac tattctccga
     7201 ttattgtagt tgatactgtt caaaaatatg gtccatctag gaatgcaagt gaattgtatt
     7261 cgccaaaatt tggttccaat gttcttaaag gtgtgaggga gtttattcgt ccattaaatc
     7321 tctatgcaaa gtttgcgttt gcaggaggtc aagctaatgg aaccaacagc atgaacaatt
     7381 tcctctataa gtcattaact gatgatggtc atgctgtcta tacgcatgag ctaacacata
     7441 tgttggataa aaccatatgg ttaaatggtt tcggaagacg aacaggacaa ggagcagaag
     7501 tttttgcaag gggattattt gaatccttga atatgtctgc ttcatctatc tctgatccga
     7561 tttttaacct caatactgcc tatcagttgg gggacaatcg aacacaaaat gctagtccag
     7621 aacgttttca aactagcgag gatctcaaga cctatatgca aggtatcttg gatgtcctct
     7681 atactttgga ttatgcagag gcccagtcta tcttgaaaaa gacaccggaa gaaagggcag
     7741 ttttgctcaa taaaattagc cttattccaa atccagccaa caatggtgta ggaaatacca
     7801 ctgaaactgt aaactccatt gatacgacct tagcagctag tttgacctct gtctcagatt
     7861 ttgtggatca gagccttatt tcaggtcgtt ataagtttga tgggcttaac acaaggggta
     7921 cagctcgtac taactcctac tatactattc ctctctttga accgatttat gctgcccttc
     7981 aaaatgatac gggtagcggt ggtgatatta gctttaagag aaatgcctac gaaattttag
     8041 gtgaatacgg ctatgaaaat ggtatggtag cctacttgtc agatcaacat gccaatgatc
     8101 aggcggcctt gaatgctata atgccagaat atgatggtaa cttagcggca tttaagaagg
     8161 cgatgtttgc acgtcgtatc gataaagtta atcaactgaa cccgactgct gtggcgacag
     8221 atttctcagc gatccaaagt ttaatggacc aggcagtgac caaggatttg gctcagctgc
     8281 aaactaatca ggcaagaaac acttttttgt cacaaaacgt caatgctgtt agagagttga
     8341 aaaatcagat tttccaagaa tacctggcta tgaccaatga tttccaaagc agtatctata
     8401 aggaaaaaga agccagccgt accttctatg tgaccaacgg tcaggaaagt tcgacagaag
     8461 gggcagggac agaggccaac ccttaccaca gcctgtccta tgccttgcaa caggctagcg
     8521 atggtgatgt cattaagctg gtgcgaaatg tgacccaccg tcaagatgct ccgtttgtca
     8581 tcaataaggc tgtgaccatt gacggtcaag gccacacctt aaccttccgc ggaccagatc
     8641 tggaattggg agcggcggtt acctttacca atatgactct caacatgatt ccgagtggta
     8701 gtcaccagcc aaccatctat ttgaatggct atcaggcaac ctttgatgcg gtgtccacaa
     8761 cggtcaatca gttacaggac aaactgcgtc cgaccatcgt tgcaggggct cgtactgggg
     8821 aagcgacggg tgaccatgct cgcttactgg ttgtaaatgg tgattccaat acccgtttcc
     8881 gtcagatttt tgcaggaaat gcagatagtt ccagttccat ccccgtgacc atcaccattg
     8941 attccgagtt tgctggagta gatgagggaa ttgattttgg tggtcaacat gacaatgtta
     9001 cctatggccg agtggaattg atttcccgtt cgaccaaggt taaagaggtc gtggcgacca
     9061 atagtatgga caatcaggtg acgataaaag cagtgcgcct ctatggagct catctcacag
     9121 atattcaaga cttacattta gcggaaaatg cagatgtgac cttatctagc caggtggata
     9181 gtattgtagg acaggttaat attgagagta gaagtaaact ccaactggat gccggtgctg
     9241 tacttcaagt tggtggtctg tcaggagaag gtatcctttc tcttctagcc gataacgtgc
     9301 taactgttac tggtgatctg acagggactg tccagataga gatacgagat tttgagcaaa
     9361 atctatccaa gcaggtgggt aaaatactgg taacaataga aggcttaacg gaacaggccg
     9421 atgctgttcg tctagtgaat gcctatggtc agtatgcact tgtagaagaa aatggtcact
     9481 accgtctggc tagtcaggac cagcagcctc agactcatac tcttaccttg cgatttatcc
     9541 aggccgagca ggtgttgaaa tcagagcagg tacaggttgt ggacggtcag tcgttggcca
     9601 atgtggaggc ttatctgccc caggcggcca cgggaactta ccagctggct ccgacctttg
     9661 atccgtctgt tttgacggga atttctgcca gtcagaccat tgatattcct gtggtgctgg
     9721 tgattccagc cactccgatt ttgtcttttg ataaaacttc cattcaagag atgacacttg
     9781 ttcagggctt ggataagagc agttaccaag aaggggaaat cttggacttg acaggggtgc
     9841 gtgtgcgatt ggtagaccag cagggaattg ccttggtgat tgatgcgaca cgttttactg
     9901 agtatggtgt tagtgccaat cctgttggaa ctccgctttt gagcagtcag caggagttga
     9961 ctttgacctt gggaaatcat gttctttcgc taccgattca ggttcaggca caactgcctt
    10021 ctaaggccag tcgttttcaa ccgcttgttt caggagaggt tatagtttgg ccgagcgaca
    10081 gtaatcagac acaaaagagt caggtcttac aagcaattag actgccaaat gaggctggta
    10141 gtgttaatct ggaagtggta ggagttcttc caacggctag tggagattat agcgttacca
    10201 ttcgagtgac ctatgatgat cagagccagg aagaagttgt ggtccctcta catattctct
    10261 ctattgacaa gggctcgggc gtcacacatg aattgccaat cggtgttctt tctaaatcgg
    10321 atcgctacca gccacaagta actggagaag cccgtgtcct tccagcaagc agtagtgatg
    10381 atgcaacggc tgaaattgtt aagcagatca gtctaccagc tgaagcaggt caatttgatg
    10441 ttgtagtagt cactcctatt ccacagtcta gtggtgacta ctccatgatt gttcgggtgg
    10501 tctatgatga tcgcagccaa gacgagatag tagtaccact tcatattttc aaaatggaaa
    10561 acggtaaggg agtcacacat gaattgccaa tcggtgttct tcctccgttg gaaacaacca
    10621 agggcgatgg agttacacat gaattaccaa tcggcgttct tccgtcatta gaagtagctt
    10681 tagagaaggg gttaggagaa aatagtccga agccagccgc aaaagaaatg gcagtctctg
    10741 tgagtgtcgt gggacagcaa aaattcgcta aaggacagtt acctaaaaca ggggatagga
    10801 ataatctttt actggttggc gtaatgcttg caatctttaa tttaatcttc tggatgccgg
    10861 gtaagaaacc tcaccaagta gaagagaagt agtaatcatt cattcttttg ctctatcagc
    10921 ataggaagaa agatttgttt tcccttaaat gctaccaatc gaatgttatc ctaattttaa
    10981 aggcagaagc taaatgtatt agtttctgct tttttaggct taacaagaga gttgaatgat
    11041 agatttttat tgagtattat caatgagttt gttttctaat tctaattcaa atggtataat
    11101 ttattaagaa ttagaggtat acatgttagt tattgaacag attgaaaaat taaaaaaaga
    11161 gaaa
//
LOCUS       DASFRC010000070        11099 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.070, whole genome shotgun sequence.
ACCESSION   DASFRC010000070 DASFRC010000000
VERSION     DASFRC010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 11099)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11099)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11099
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.070"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            20..499
                     /locus_tag="U1087_001248"
                     /pseudo
     CDS             20..499
                     /locus_tag="U1087_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921768.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1542 domain-containing protein"
     gene            536..1105
                     /locus_tag="U1087_001249"
     CDS             536..1105
                     /locus_tag="U1087_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM4755728.1"
                     /translation="MSIKYPDGSIDLILPAEIVKQADTTAPAITDDAKGNIVVAPTKE
                     AVEFVVTYVDNNGKAQLVVVTKGADGKWTTTAKAVIVDPVTGQVIIPGSAIKPGTVVT
                     AYSKDMAGNVSDLNSAEVEAVDANNPAAGVKVKSVTSTSNANKSTKKAKQLPNTGEKA
                     TSATSLGLAVLGMGLALFAAKRKKDEEEA"
     gene            1300..2436
                     /locus_tag="U1087_001250"
     CDS             1300..2436
                     /locus_tag="U1087_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HEM4755729.1"
                     /translation="MKKRPTSAYIHIPFCTQICYYCDFSKVFIKNQPVDEYLAALMEE
                     VKFYDLPALRTLYIGGGTPSALSADQLDYLLTNLEDLLDLSQVEEFTIEANPGDLTAD
                     KIAVLKKSKCNRVSLGVQTFDDRMLKKIGRSHNQAQIYETIAALKEAGFHNISIDLIY
                     ALPGQTMEQVVDNVAKALELDIPHMSLYSLILENHTVFMNRQRRGNLHLPNEDVESDM
                     FDYILQELEKNGFEHYEISNFTKPGFESRHNLMYWDNSEYYGLGAGASGYIDGMRYRN
                     RGPIQHYLKSIREKGHSRLHEEFLSKTEQMEEEMFLGLRKKTGVSIERFEEKFGISFE
                     DRYGQVVRDLKNEGLLQEEDRWLRMTKKGLFLGDTVAERFIITD"
     gene            2452..3192
                     /locus_tag="U1087_001251"
     CDS             2452..3192
                     /locus_tag="U1087_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-[acyl-carrier-protein] thioesterase"
                     /protein_id="HEM4755730.1"
                     /translation="MGLTYQEAFTILFDMVDVKQEIKLPDFISYCLGVSGRQSEELGR
                     SDLYIFQEFGLIWVVTDYELTIQSLPKYNETITIKTEAVAYNKFFCHRMFYIYDEAGN
                     LLLDILCYFVLIDFESRKVAPVPEALIAPYQSEQVKKLPRAPKYQLLENPSVQEFPVR
                     YFDLDMNGHVNNGKYLEWMYEALGYDCLLCHVPKKIQLKYLKEVEATSLVSSRRVSNA
                     CVSQHEIVVDGHIHAQAVIEWRERHGAG"
     gene            3179..3788
                     /locus_tag="U1087_001252"
                     /pseudo
     CDS             3179..3788
                     /locus_tag="U1087_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647054.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
     gene            3798..4571
                     /locus_tag="U1087_001253"
     CDS             3798..4571
                     /locus_tag="U1087_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01457 family HAD-type hydrolase"
                     /protein_id="HEM4755731.1"
                     /translation="MTYTGYLIDLDGTIYEGKKRIPAGERFIHRLQERNIPYLFVTNN
                     TTRRPEMVQAMLAENFNIETPLETIYTASLATVDYMNDLGKEKTVYVIGEDGLKSAIF
                     EAGYVEDTENPAYVVVGLDTQLTYEKLTIATLAIQKGATFIGTNPDLNIPTERGHLPG
                     AGSLIALLKAATRVQPTFIGKPEAIIMDKALEILGTERSQTVMVGDNYLTDIRAGIDN
                     GFPTLLVLTGFTKPEEVADLPLAPTHVLNSLDEWSFDEN"
     gene            4561..5190
                     /locus_tag="U1087_001254"
     CDS             4561..5190
                     /locus_tag="U1087_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002263554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01906 family membrane protein"
                     /protein_id="HEM4755732.1"
                     /translation="MRTKLQIIGTILFVLSAAVLGTIYLAWLVYPIEISYLGLEKVVY
                     MKSSDISYNFNILMTYLTNPFASVLDMPNFSSSADGLKHFADVKHLFHLTQGIFLISL
                     PAVFYFWKEVVRKGYGKLYQAVFLWMAAVPLFIAVLGLLIGFDSFFTLFHQVLFPGDS
                     TWLFNSNTDPVIYILPAEFFLHCFLLFFVLYEIICGAWLLLLRKKWKKS"
     gene            5271..5447
                     /locus_tag="U1087_001255"
     CDS             5271..5447
                     /locus_tag="U1087_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000048061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HEM4755733.1"
                     /translation="MSKTVVRKNESLDDALRRFKRAVTKAGTLQETRKREFYEKPSVK
                     RKRKSEAARKRKKF"
     gene            5552..6565
                     /gene="galE"
                     /locus_tag="U1087_001256"
     CDS             5552..6565
                     /gene="galE"
                     /locus_tag="U1087_001256"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HEM4755734.1"
                     /translation="MSILVTGGAGYIGSHTVVGLLKLGKEVVIVDNLSNSSILVLDRI
                     ETITGKRPTFYELDVADKEALRQVFENENIEAAIHFAGYKAVGESVAKPIMYYENNIM
                     STLALVEVMAEFGVKKIVFSSSATVYGLNNPSPLVETMPTSATNPYGYTKVMLEQILR
                     DVEVADKEWSIALLRYFNPIGAHESGLIGEDPAGIPNNLMPFIAQVAVGKRPELSVFG
                     NDYDTVDGTGVRDYIHVIDLALGHIKALEKISTTAGVHTYNLGSGQGTSVLELVQAFE
                     KVNGVPVPYKIVDRRPGDVATCYANADKALEELDWKTEKTIEDMCRDTWNWQSKNPNG
                     YEG"
     gene            complement(6639..6998)
                     /gene="mscL"
                     /locus_tag="U1087_001257"
     CDS             complement(6639..6998)
                     /gene="mscL"
                     /locus_tag="U1087_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HEM4755735.1"
                     /translation="MLKELKNFLFRGNIVDLAVAVVIGGAFGAIITSFVDDIITPLIL
                     NPALKAANVQNIADLSWNGVKYGSFLSAVINFLIIGTSMFFVVKAAEKAMPKKVEEPA
                     GPTQEELLAEIRDLLKK"
     gene            7180..8970
                     /gene="dnaG"
                     /locus_tag="U1087_001258"
     CDS             7180..8970
                     /gene="dnaG"
                     /locus_tag="U1087_001258"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEM4755736.1"
                     /translation="MLSKDKITEIKQALNIVDVIGETVALTKAGRNYVGLCPFHGEKT
                     PSFNVIEDKQFYHCFGCGKSGDVFKFVEEVRGVSFADAAAILAEKAGFQVDVTPSYHQ
                     EEKKVSPHQVLYDIHRDAAKFYHALLMTTKMGEEARAYLHQRGLTDDVIKTFQLGLAP
                     AEQNILYQKLSGQYDEESLLNSGLFNPSENNIIYDAFQARIIFPLADEYGRIVAFSGR
                     IWTEEDRNNKQLAKYKNSRSTAIFNKSYELYHLDKAKAVIKKQRETYLMEGFLDVIAA
                     HRVGIDNAVASMGTALTREHVAHLAKFCKKIVLTYDGDKAGQAATMKALDELQDFQVE
                     IVSLPDNMDPDEFLQKNSEEALQQVLTKSRISDVEFLIQYLKPENPDNLQMQIEFVDK
                     IAPIIAKVSSITAQNSYIYKVADLLSDFDYNQVEQAVNAVRLNQRQERTQQVFQSQTG
                     QSYLPPVQTIARITSLIRTENHLLYRMVEHPYILNEFRLREDFYFATPELQAIYDMLK
                     KSGEITSFELSQLNDSAQQAWYRMQEERLPNEVSPHEIEELEIRRDKELLKKENQHLA
                     RKIREHSHVGNADIALDELQKLLDKRRQME"
     gene            8973..10091
                     /gene="rpoD"
                     /locus_tag="U1087_001259"
     CDS             8973..10091
                     /gene="rpoD"
                     /locus_tag="U1087_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HEM4755737.1"
                     /translation="MTNKKDKKTEVTTFDVQVAEFIRNHKKQGSATDDEINDQLVIPF
                     TLDADGIDDLLQRIQDAGISIVDKEGNPSARAMQVEEEPGLSDEELLGSTSAKVNDPV
                     RMYLKEIGVVPLLTNEEEQELALAVEAGDPEAKQRLAEANLRLVVSIAKRYVGRGMQF
                     LDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVET
                     INKLVREQRNLLQELGQDPTPEQIAERMDMTPEKVREILKIAQEPVSLETPIGEEDDS
                     HLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLED
                     VGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED"
     gene            10325..10648
                     /locus_tag="U1087_001260"
     CDS             10325..10648
                     /locus_tag="U1087_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sulfur cluster assembly factor"
                     /protein_id="HEM4755738.1"
                     /translation="MTYTEDQIKDIQERIFHALEDVIDPELGIDIINLGLIYEIRFIE
                     GKAEIDMTLTTMGCPLADLITDQIHDVLKDVPEVTEVDVRLVWSPAWTVQKMSRYARI
                     ALGIK"
     gene            10830..10987
                     /locus_tag="U1087_001261"
                     /pseudo
     CDS             10830..10987
                     /locus_tag="U1087_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018373723.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT         3360 a         2137 c         2488 g         3114 t
ORIGIN      
        1 agaagatgct aagaaagcta tcgatgcaaa tccaaacttg tcagatgcag agaaacaagc
       61 cgctaaagat gcagtagatg catcagcagc agcggcaaat aaagcaattg acggttcaac
      121 atcttcagtt gaagttcaag ctgctaaaga taagggcaac gctgctattg cagaaaatgt
      181 tcttgatgca gctaagcaag gtgctaagaa caagcttatg gaagaagcag ataaagcgaa
      241 agcggctatc gatgcaaatc caaacttgac accagaagag aaagcagcag ctaaggctga
      301 aatcgataaa gctgttgaag aagcaattat ttcaatcaat ggtgctggaa ctcatcatgc
      361 attgggtgaa atcaaacttc cactttcagc tcttatcaaa ccagttgtaa cagtaacacc
      421 agtacttgat ccaaacaact tgactgaaga agaaattgct cgcatcaagg ctctccttga
      481 agagaacaat acattcccag aaggaactga aatcatcgtt tctaaagatg cttctgtgtc
      541 aatcaagtat ccagatggtt ctattgactt gatattgcca gcagagattg tgaaacaggc
      601 agatacaact gctcctgcga ttacagacga tgctaaaggt aatattgtag ttgctccaac
      661 taaagaggct gttgaatttg ttgttaccta cgtagataac aatggtaagg cacaacttgt
      721 tgttgttact aagggtgcag atggtaaatg gacaacaact gctaaagctg tgattgtaga
      781 tcctgttact ggtcaagtta tcattccagg ttctgctatc aagccaggaa cagttgtgac
      841 agcttactct aaagatatgg ctggaaatgt ttcagacttg aattcggcag aagttgaagc
      901 agtagatgca aataatcctg cagcaggagt gaaagtgaaa tcagttactt ctacttcaaa
      961 tgccaacaag tcaactaaga aagctaagca attgccaaat acaggtgaaa aagcaacttc
     1021 agcaacttca cttggattag cagttcttgg aatgggatta gcacttttcg cagcaaagag
     1081 aaaaaaagac gaagaagaag cttaaaataa gccattcatc gaaatctttt tgataagaga
     1141 ctagcttttc tcgaaaagtt gagtacagat ggatatctct tggtaagtca tccatctgta
     1201 cagttcaaaa taaaaaggat ctaaggtcat tagactttag gtccttttgt tgttttgcta
     1261 aaaacataaa aagtctaata gtgtgctata atagttggta tgaaaaaacg accgacatct
     1321 gcctatatcc atattccatt ttgtacccag atttgttact actgtgactt ttccaaggtt
     1381 tttattaaga accagcctgt tgacgagtat ttggctgccc tcatggaaga ggtcaagttt
     1441 tacgacctgc cagccctccg cacactttat atcggaggtg gaacaccgtc ggctctctcg
     1501 gcagaccagc tggattatct cctgaccaat ctggaggacc tgctggactt gtcacaggtg
     1561 gaagaattca ctattgaggc taatccaggt gacttgacgg cggataagat tgcggttctg
     1621 aaaaagtcca agtgcaatcg agtgtcgctg ggggtccaga cctttgatga ccgtatgttg
     1681 aaaaaaatcg gtcgtagcca caaccaagct cagatttatg aaaccattgc agccctcaag
     1741 gaagcgggtt tccataacat ttctattgac ctgatttatg ccctgcctgg tcagactatg
     1801 gaacaggtgg tcgataatgt cgccaaggcc ttggagctgg acattcccca catgagcctc
     1861 tatagcttga ttttggagaa tcacacggtc ttcatgaacc gccagcgtcg tggcaacctt
     1921 catctgccca acgaagatgt ggagtccgat atgtttgact acattcttca ggagttggag
     1981 aaaaacggct ttgagcacta cgagatttcc aacttcacca agcccggctt tgaaagccgc
     2041 cacaacctca tgtactggga caattccgag tattacggct tgggagctgg agcttcaggc
     2101 tacatcgacg gcatgcgtta tcgcaaccgc ggccccatcc agcactacct caaatccatc
     2161 cgcgaaaaag gccattcccg cctgcacgaa gagtttctca gtaagactga gcagatggaa
     2221 gaagagatgt ttttagggct acggaaaaaa actggcgtgt ctattgagcg attcgaggaa
     2281 aagtttggca tttcctttga agaccgctac ggtcaggtgg tcagagactt gaaaaatgaa
     2341 ggtctcttgc aagaagaaga ccgttggctt cggatgacca aaaaaggatt gtttcttggc
     2401 gatacagttg ctgaacgatt tattattaca gattagaaaa gagcaaaaac aatgggctta
     2461 acctaccaag aagcattcac cattctcttt gatatggtgg atgttaaaca agaaattaaa
     2521 ctgcctgact ttatttccta ctgtctcggt gtgtcaggtc ggcagtcgga agaactaggt
     2581 cgcagtgacc tctatatttt tcaggaattt ggcttgattt gggtcgtgac agattatgaa
     2641 ctaactattc aaagcctgcc taagtacaat gaaaccatca cgataaaaac agaagcggtt
     2701 gcctataaca agtttttctg tcatcggatg ttctacatct acgatgaggc aggcaatctt
     2761 ttgttggata ttctctgcta ttttgtcctg attgattttg agagtcgcaa ggttgctcca
     2821 gtaccggaag ctttgattgc tccttatcag tctgagcagg tcaagaaatt gcctcgggct
     2881 cccaagtatc agctcttgga aaatccatct gttcaagaat ttcctgttcg ctattttgac
     2941 ttggatatga atgggcatgt caataatggc aagtatctgg aatggatgta tgaagcactg
     3001 ggctatgatt gtctgctctg ccatgtccct aaaaaaatcc aactcaagta tcttaaggag
     3061 gtagaggcga ctagcttggt aagttcgcgt agggtgtcta atgcttgtgt cagtcagcat
     3121 gagattgtgg tagatggaca tatccatgct caagctgtca tagaatggag ggaacgtcat
     3181 ggcgcaggat aagtggcttg aatgggccgt acgtttacaa gccttggctc agactggttt
     3241 gtaaagatgt ctatgatatg gagcgtttcg aagaaatcag acagattgcg gcggaaatgt
     3301 tgatagagct gtctgggcag cccttggaag tcgtaaaaga actcttctgc aacgaaacag
     3361 gctaccagac cccaaaaatg gatacccgcg cagctatttt ccaagaggat aaaatcctac
     3421 tggttcagga aaacgatggg ctctggtcct tgccaggtgg ttggtgcgat gtggatcaat
     3481 ccgtcaagga caatgttgtc aaggaagtaa aggaagaagc ggggctggat gtggaggctc
     3541 tgcgagtcgt ggcgattttg gacaagcaca agaacaatcc tgccaagtca gctcaccgcg
     3601 tgaccaaggt cttcattcta tgtcgtctcc ttggcgggga gtttcagccc aattcggaaa
     3661 cagttgccag tggatttttc agcctagacg atttaccgcc actttcactt gggaaaaaca
     3721 cagtagagca gttagcgctt tgcttggaag ccagtcggtc ggagtattgg gaaacacgat
     3781 ttgattaagg aggaaaaatg acgtatacag gttatttgat tgatttggat ggtacgattt
     3841 atgaagggaa aaagcggatt cctgctggtg aacgattcat tcatcgcttg caggagcgca
     3901 acattcccta tctctttgtg accaacaata ccacccgtcg tcctgagatg gtgcaggcta
     3961 tgttggctga aaattttaac attgagacac cacttgaaac tatctacacg gccagtctgg
     4021 cgacagtaga ctatatgaat gacttgggca aggaaaagac tgtctatgtc attggagaag
     4081 acgggctcaa gtctgccatt tttgaggcag gttatgtgga agacacggaa aatccagcct
     4141 atgttgtcgt cggtttggat actcagttga cctatgaaaa actaaccatt gccaccctag
     4201 ctattcaaaa gggagctacc ttcataggta ccaatcctga tttgaacatt ccgactgaaa
     4261 gaggtcattt gccaggagca ggctcactga ttgccctcct gaaagctgct acccgtgtgc
     4321 agccgacctt tatcggtaag cctgaagcca ttatcatgga caaggctctg gagattttag
     4381 gcacagaacg cagccaaacg gttatggtgg gagataacta cctgacggat attcgtgcag
     4441 ggattgacaa tggatttcca actcttttag tcctgactgg atttaccaag ccagaagaag
     4501 tagcagactt acccctggct ccaacccatg tcctcaacag cctagatgaa tggagttttg
     4561 atgagaacta agttacagat tatcggaacg attttatttg tcttgtcggc agcagttcta
     4621 ggtacaatct acctagcttg gctagtttat ccgatagaaa tttcctacct aggcttggaa
     4681 aaagttgtct acatgaagtc atcagatatt tcctacaatt tcaatatcct gatgacctat
     4741 ttgaccaatc cttttgcaag tgttttagac atgcccaatt tttcatcatc agctgatggt
     4801 ctgaaacatt ttgcggatgt gaagcattta ttccatctaa ctcaggggat tttcctgatt
     4861 agtttgcctg cggttttcta tttttggaaa gaagtggtgc gaaaaggata tggaaaattg
     4921 tatcaagccg tctttctatg gatggcagca gtacccttat tcattgctgt actaggtttg
     4981 ttgattggtt tcgattcttt ctttactctc tttcatcaag ttctttttcc tggtgactcg
     5041 acctggctct tcaactcaaa tacagatccg gttatctaca tcttaccagc agaattcttc
     5101 ctgcattgtt ttctcctatt ctttgtcttg tatgaaatca tctgtggagc ttggctattg
     5161 ctactaagga aaaagtggaa aaagtcgtga ttatgtaaaa aaagttcttg acaatccttt
     5221 tgattgcagt tataatagta tgtaatttga aattgagggg agtgaaaaaa atgtcaaaaa
     5281 cagtagtacg caagaacgaa tcacttgatg atgctcttcg tcgtttcaaa cgtgcggtta
     5341 ctaaagctgg tactcttcaa gaaacacgca aacgcgaatt ctacgaaaaa ccatctgtaa
     5401 aacgtaaacg taaatcagaa gcagctcgca agcgtaaaaa attctaattg aatttgaaaa
     5461 cggccgaaag gctgtttttt gtttactttt tacaacaggt aacatataat agggatatag
     5521 aatttttgtc caagtgaaaa ggagtaaaga gatgagtatc ttagttactg gtggtgcagg
     5581 ttatattggt agtcatacag ttgtcggatt gttgaagttg gggaaagaag tggttatcgt
     5641 ggataatctt tcaaactcaa gtattttggt tttagatcgc attgaaacca tcactggcaa
     5701 gcgcccaact ttctatgagt tggacgtggc agataaggaa gccttgcgcc aagtttttga
     5761 aaatgaaaac attgaggcag ccattcactt tgccggctac aaggcagtag gagaatcagt
     5821 ggctaagcca attatgtact atgaaaacaa tatcatgtca accctagctt tggtggaagt
     5881 catggcagaa tttggtgtta agaaaattgt cttctcctca agtgcgactg tttatggcct
     5941 caataatcca tcgcctttgg ttgaaactat gccaactagc gcaacgaatc cgtacggcta
     6001 taccaaagtt atgttggaac aaatcttgcg tgatgtggaa gtagcagata aggagtggag
     6061 tattgcattg ctccgttatt tcaatccaat cggtgcccat gaatctggct tgattgggga
     6121 agatccggct ggtattccta ataatttgat gccgtttatt gcacaggtag ccgttggtaa
     6181 acgtccagaa ctcagcgttt ttggtaatga ttatgacaca gttgatggaa caggtgttcg
     6241 tgattatatt cacgtcattg acttagcact cggtcatatc aaggcgcttg aaaaaatttc
     6301 aactactgca ggtgtacata cttacaatct tggttcaggc caaggaacca gtgtcttaga
     6361 acttgttcaa gcttttgaaa aagtgaatgg tgtaccggta ccttataaaa ttgtagaccg
     6421 tcgccctggt gatgtggcaa cctgttacgc caacgctgat aaggctttgg aagaactcga
     6481 ttggaaaaca gagaaaacaa ttgaggatat gtgccgtgac acctggaact ggcaatcgaa
     6541 aaatccaaat ggatacgaag gataagaaaa gatgcgggta gagtacctgc atcttctatt
     6601 tttatgaaca aaaaacaagc actagacctg ataatatatt attttttcaa caaatcgcgg
     6661 atttctgcaa gcaactcttc ttgagttgga ccagctggct cttcaacctt tttaggcatt
     6721 gctttctcag ctgctttaac aacgaagaac attgaagttc cgataatcaa gaagttgata
     6781 acagcgctca agaagctacc gtatttaaca ccgttccaag aaagatcagc gatgttttga
     6841 acgtttgcag ctttcaaagc agggtttaag atcaacggag tgatgatgtc atcaacaaaa
     6901 gaagtgatga tagcgccaaa cgcaccacca attacaaccg ctacagcaag gtcaacaatg
     6961 ttcccgcgga acaagaaatt tttcaattct ttcaacatat cctaaatatg tcctttcata
     7021 aatattttat tttatctatt atacccataa aaaaatattt tacaagcaat ttgttttaga
     7081 aattttacat tttcccgtat ttagtataca atagagtatg ttaaactaag ggaagagtgt
     7141 tcacttttta aattagctag tatgatatga ggagggaatg tgctttcaaa ggataaaatt
     7201 actgaaataa aacaagctct caatatcgtt gatgttattg gtgaaacggt tgctttgact
     7261 aaggccggac gtaattatgt cggtctttgc ccttttcatg gggagaaaac cccgtctttc
     7321 aatgtgattg aagataagca gttctaccat tgttttggat gtggtaagtc cggagatgta
     7381 ttcaagtttg tcgaagaagt tcgtggtgtt tcttttgcag atgcggcagc tatcttagct
     7441 gagaaggcag ggtttcaagt agatgtaact ccttcctatc atcaagagga gaaaaaggtt
     7501 agtccgcatc aggtactgta tgatattcat cgggatgctg caaagtttta tcatgccctt
     7561 ttgatgacaa ccaaaatggg tgaggaagct agagcttatc tgcaccaacg tggcttgaca
     7621 gatgatgtca taaaaacatt ccagctaggc ttagctcctg ccgaacagaa tattctttac
     7681 caaaaactat caggtcaata tgacgaagaa agtctattga attcgggttt gttcaatcca
     7741 agtgagaata atattattta tgacgccttt caagctagga ttattttccc cttggcggat
     7801 gaatatggtc gaattgtagc tttttcaggt cggatttgga ccgaagaaga tcgaaacaat
     7861 aaacaattag ctaagtataa aaactctcgt agtactgcga ttttcaataa aagctatgaa
     7921 ttgtatcatt tggacaaggc taaagcggtt attaagaagc aacgtgaaac ctatctcatg
     7981 gaaggttttc tagatgtcat tgctgctcat cgtgtaggga ttgataatgc agtggcttct
     8041 atgggaacag ctttgacaag agagcatgtt gcacatctag ctaagttttg taagaaaatt
     8101 gttctgactt atgatgggga taaggctgga caggctgcta ccatgaaggc gttggacgaa
     8161 ctacaagatt ttcaggttga aattgtgagt ttgccagata atatggaccc agatgaattt
     8221 ttgcagaaaa attcggaaga agccttgcaa caggttttaa ccaaatcacg aatcagcgat
     8281 gtagaatttt tgattcaata cttgaaacct gaaaatcctg acaatctaca aatgcagatt
     8341 gagtttgtag ataagattgc accaattatt gccaaagtat catccattac agctcaaaat
     8401 tcttatattt ataaggtggc ggatttactt tctgactttg attataatca ggtggaacag
     8461 gcagtaaatg ctgttcgtct gaaccagcgc caggagcgaa cacaacaggt atttcaatca
     8521 cagactggtc agtcttattt gccaccagtc caaacgattg ctcgtataac gagtctaatt
     8581 cgaacagaaa accatttact ttatcggatg gttgaacatc cttatattct caatgagttc
     8641 cgtttacgag aagattttta ttttgcgacg ccagaattgc aagctattta tgatatgtta
     8701 aaaaaatctg gggaaattac cagttttgaa ctatcacagt tgaacgattc cgctcaacag
     8761 gcttggtatc gtatgcagga agaacgttta cctaatgaag tatctccaca cgaaatcgaa
     8821 gaattagaaa ttcggcgaga caaggaattg ttaaagaagg agaaccagca cttagcacgg
     8881 aaaatccgtg aacattccca tgtgggaaat gcagatattg ccctcgacga gttgcaaaaa
     8941 ctcctcgata aaagaagaca aatggagtaa atatgacaaa taaaaaagat aaaaaaacag
     9001 aagtaactac ttttgatgta caagttgccg aatttatccg taaccataaa aaacaaggtt
     9061 cagctacaga cgatgaaatc aatgaccaac tggttattcc atttacgctt gatgctgacg
     9121 gaatcgatga tttgctccaa cgtattcagg acgcagggat ttcgattgtc gataaagaag
     9181 ggaacccttc tgctcgtgct atgcaggtag aggaggaacc aggattatct gatgaagaat
     9241 tgctcggaag cacttctgca aaagtgaacg acccagtccg catgtatttg aaagaaattg
     9301 gtgttgtacc tcttttgacc aacgaagaag agcaagaatt ggcattggcg gttgaggcag
     9361 gtgacccaga agcgaaacaa cgtttggctg aagctaactt gcgtttggtt gtatccattg
     9421 ccaaacgcta tgtcggccgt ggtatgcagt tccttgatct tatccaagaa ggaaacatgg
     9481 gcttgatgaa ggccgttgat aagtttgact attcaaaagg tttcaagttt tcaacctatg
     9541 caacctggtg gattcgtcag gctatcactc gtgccattgc ggaccaagct cggactattc
     9601 ggatccctgt tcacatggta gaaaccatta acaaattggt ccgtgaacaa cgcaatctct
     9661 tgcaagaatt gggccaagat ccaacaccag aacaaattgc tgagcgtatg gatatgacgc
     9721 ctgagaaagt tcgtgaaatc ctcaagattg cccaagagcc tgtttcactc gagactccaa
     9781 ttggtgaaga agatgatagc catttgggag atttcattga agatgaagtg attgaaaatc
     9841 cagttgatta cacaactcgt gtcgttcttc gtgaacagtt agatgaggta ttggatactc
     9901 ttactgaccg tgaggaaaac gtattgcgtc ttcgttttgg tttagatgat ggtaaaatgc
     9961 gcacgcttga agatgttggc aaggtcttta acgtaacccg tgaacgcatc cgccaaatcg
    10021 aagccaaagc cctccgtaaa ctccgccacc catcccgcag caaaccactc agagatttta
    10081 tagaggatta aaacaccact ggcgtggtgt tttaacccga gcctagaaat aagaaagcga
    10141 ggttaacctc cgggggaggt tttcaaccgc tcgctgaaaa caggaaacga gcgaaggtac
    10201 tgcgtacctt tttaaccgct cgccttgaaa ttagaaaggg agcgtaacgt ccagtggact
    10261 ttttgacaca aacttggttt gtttcttttc tagtattgaa cttgtgaaaa agaaagagag
    10321 aaaaatgacg tacacagaag atcaaattaa agacattcag gagcgtattt ttcatgctct
    10381 tgaagatgtg attgaccctg agctaggtat tgatattatc aatttagggc taatttatga
    10441 aatccgattt attgagggca aggctgaaat tgatatgacc ttgacgacca tgggttgtcc
    10501 attagctgat ctaattaccg atcaaattca tgatgtactg aaggatgtcc ctgaagtaac
    10561 agaagtagat gtgagactgg tttggtcacc agcttggacc gttcaaaaaa tgagtcgtta
    10621 tgctcgaatt gcattaggaa taaaataaaa aaaacaaaat ggtttcgaac gtttgaagcc
    10681 atttttttat tatggcttcg agccagtttt tctcgtagag aaaaacaaga aagccaccag
    10741 ctatgctggt ggctgccaag gctttgagtt tccatttctt tttcctgtta taatctaatt
    10801 gttcaggtta gatcaaggag gaaaaagaaa tggctaaaac cagttacagt ttatcacata
    10861 ctaaatggat gtgctctatc acatagtttt cacacctaag taccgtagaa aatccattta
    10921 ctacaaaata aggcaggatt taattgatat tttccgtcat ctatgtcgat gcaaaggcgt
    10981 ggacatcacg tcatacgcat gaaaaatttc ttctctcctt ttgtccccgg aaataactgc
    11041 tttaaactta gtatctacct ttttacaagc accttatccc cgatttccaa ataattgtg
//
LOCUS       DASFRC010000071        11050 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.071, whole genome shotgun sequence.
ACCESSION   DASFRC010000071 DASFRC010000000
VERSION     DASFRC010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 11050)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11050)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11050
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.071"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..522
                     /locus_tag="U1087_001262"
     CDS             <1..522
                     /locus_tag="U1087_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
                     /protein_id="HEM4755739.1"
                     /translation="QALQTMGLEVVMLTGDNEKTAQAIAKEVGIEQVVSQVMPDDKAK
                     QVKFLQEQGKTVAMVGDGINDAPALAQAHVGLAIGSGTDIAIESADIVLMHSDILDVV
                     KAVKLSQATMRTIKQNLFWAFAYNVIGIPIAMGLLHIFGGPLLNPMFAGAAMALSSVS
                     VVLNALRLTTYKL"
     gene            601..1086
                     /gene="tpx"
                     /locus_tag="U1087_001263"
     CDS             601..1086
                     /gene="tpx"
                     /locus_tag="U1087_001263"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002267998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HEM4755740.1"
                     /translation="MTTFIGKPVTLVGPQLRVGDTAPDFVLMANDLSLKSLKDFGKQT
                     KVISVVPSIDTGICDTQTRRFNQELADRDNTVVITISADLPFAQKRWCGAAGLEDAIT
                     LSDYYDHAFGKSYGVLMREWNLLARAVFVLNADNEITYIEYLDNVNEHPDYDAALEAV
                     K"
     gene            1181..1516
                     /locus_tag="U1087_001264"
     CDS             1181..1516
                     /locus_tag="U1087_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase BlpT"
                     /protein_id="HEM4755741.1"
                     /translation="MEKTQIIQDVLALIQDLNQAFQADKVGTVDEQRLQHNLTETTRI
                     LSEAESVTNTELIAIEKFYRSTSFLVGLGDLRLSETSRQAWRAFDRYYYETIREELKL
                     YGGSAIAQV"
     gene            1605..2306
                     /locus_tag="U1087_001265"
     CDS             1605..2306
                     /locus_tag="U1087_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4755742.1"
                     /translation="MSYIQVKNSSKYYQMGDATIVANDSVSFEIEQGELVIILGSSGA
                     GKSTLLNILGGMDSNDEGEVWIDGVDIAKLSSHELTNYRRDDVGFVFQFYNLVANLTA
                     KENVELAAEIVKDALDAEEVLEQVGLGHRINNFPAQLSGGEQQRVAIARAVAKKPKIL
                     LCDEPTGALDYQTGKQVLQILQDMSRKQGATVIIVTHNSSLAPIADRVIRMRDARVHS
                     VELHAEPQDIASLEY"
     gene            2306..5683
                     /locus_tag="U1087_001266"
     CDS             2306..5683
                     /locus_tag="U1087_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEM4755743.1"
                     /translation="MGETMKKKIYWKDMRQSLLSSKGRFLSIFSLMMLGALALTGLKV
                     TAPNMEKTAQAYIADHRTMDLAVISGLGLSQADLDELETIEGATLEAGYFKDVVTNEG
                     QTAIRLFSAPKTLSTYKLVEGEMPSQKGQIALSASLKNRYKLDDTVQVTESDKDGKIL
                     TQTSFTLVGFVASAEIWDNETMGMAASGDGQLGGYGLVSQDTFKSEVYTIARIRYDDL
                     VDLPYYSQAYQDRLDQHQEDLEKLLANNDEQRLATIQSDGQTDISKGEEEIAQAQSQL
                     EQAESELETGEEQLATGRREFARGRAKVVQTEAELRAAQAQLLKNKFELEESKKELDG
                     RKAQLEQTASFLDGYQMELEMSAQQLEEAKQELDSQNAQLSQTASQISTGRASWFQAQ
                     QELDLEIANHLQEGQTLSDYPDLLARQEGLDVEKSRLDQMESAHEQANQAYLQGYDYY
                     QTKQNEYNSNLAQYQTWNQEYQAGLARYQAGLSQYEQGIAAYNKGVEDYEWGLSQLES
                     SNQLLRQEELRLEEADKELSQAQSQFSDKKAAADQEISQAQTEIAQAKSDLSKLEKAP
                     YQVYTRSSLPGGDGYTTYSNATRSIAAVGNVFPVVLYLVAALVTFTTMARFVDEERTQ
                     SGLFKALGYTNRQIMAKFILYGLAAGLVGTIVGIIAGNLLLSPLISDIITQTTVIGPA
                     KLHFYPLWTGLALLLSLVSSVLPAYLVARRELTEKPAQLLLPKPPVTGSSIWLEKWPA
                     IWSRLSFTHKVTARNIFRYKLRMLMTIFGVAGTVALLFGGLGIRSSISGVVQRQFGEL
                     IHYDMLVVENSRATEEELDKLTHFLQSDQVRQSLPVAFEQLHQTVEENGQRKNLSISL
                     YISDRRDFGNQVSLESSTGQPIKLSDRGIVLTEKLAQIYGVSVGDKLSLTLEDKEVSV
                     RVEAVADMYAGHFIYMTDSYYEQVTGKQKTANAYLVQLKDSQLGHIQTLASQLLAMPA
                     VRSLVQNTSLIDMLTTIAGSLQTIMTILVILSILLGLVILYNLTIINMSERIRELSTI
                     KVLGFHNKEVTMYIYRETIALSLIGMLVGLVGGIYLHKLLLAMIGSDSIRFNPSVGLE
                     VYLIPILAISGILAALGWYVNHHLRKVDMLEALKSVD"
     gene            5836..7152
                     /locus_tag="U1087_001267"
     CDS             5836..7152
                     /locus_tag="U1087_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755744.1"
                     /translation="MCYNHLMKKISDLGLTGRKLVREGLILVFIGIGFLIAGWQFPGL
                     ILRFVHAGLFFLALYELSMTFFRKKKSSESVIALVGKAVLFGILASLDLAVQIPLYFA
                     AIFVGIYQLFTALINFITFYLYRKDGVQPRIRYLIDGIWLSLLGSASLFVSGTQLVVQ
                     TIVIGGYLILYGLTNLRDGFLFEEAIEQQNLKRHVRLPLPLFLAALIPRMTLQKVNDY
                     LADNKGQTAQSIYNRHKEIAELPALEVFVHVGEEGFGAVGHVDLSYKGQVYGYGSYDV
                     LSERLGGAIGDGVLFKAERQAYIDFCNQEGMTMLGYQLSLTPEQEEAVEARLAEIDNL
                     LLPWNPSPEKVSKTADGQPIEMYAYRMKEEIGAALFKFKKSKFKTYFVLSTNCVLLAD
                     SVIGQAGTDVLGLRGFIAPGTYQSYLDQEYEKPYSLVVAKNIYYRK"
     gene            7237..9873
                     /gene="polA"
                     /locus_tag="U1087_001268"
     CDS             7237..9873
                     /gene="polA"
                     /locus_tag="U1087_001268"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HEM4755745.1"
                     /translation="MKKNKLLLIDGSSVAFRAFFALYNQIDRFKNANGLHTNAIYGFN
                     LMLDHMMKRIEPTHILVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPFIRQMLDA
                     MGVKHYELDQYEADDIIGTLDKMAERTDIPFDVTIVSGDKDLIQLTDENTVVEISKKG
                     VAEFEEFTPAYLMEKMGITPTQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLTEFGSL
                     DGIYENIDSMKASKMKENLIADKEQAFLSRTLATIDTNAPIEIGLDDIVYQGPKLEEL
                     GQFYDDMGFKQLRDQLGTTSSQEEAVLDFQIVTEISPAMLKQDQFFYFEILGENYHRE
                     DLVGLAWGDKDKIYVGGPELLDSPVLRDFLENQTIKTYDFKRGKVLLDRKEITLPPAT
                     FDSRLAKYLLSTVEDNSLTTIANLYGQTSLVPDEAVYGKGAKLDLPEREIFFPHLARK
                     VQVLIETEEPMLTKLEENQQLDLLFDMELPLANVLAKMEIAGIKVEAETLKAMQSENE
                     VLIDQLTKEIYELAGQEFNINSPKQLGTILFEEMGLPLEYTKKTKTGYSTAVDVLERL
                     APIAPVVSKILEYRQITKLQSTYVVGLQDAILEDGKIHTRYVQDLTQTGRLSSTDPNL
                     QNIPVRLEQGRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADI
                     HTSTAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLSNNLGITRKEAKAYIDT
                     YFERFPGIKNYMETIVREARDKGYVETIYKRRRELPDINSRNFNVRNFAERTAINSPI
                     QGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIVLEVPVAELETVKAMVKETMES
                     AISLSVPLIVDENEGPTWYEAK"
     gene            9886..10641
                     /locus_tag="U1087_001269"
     CDS             9886..10641
                     /locus_tag="U1087_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEM4755746.1"
                     /translation="MKKIVLCIGLCSLLLAGCGKTAQKAEKTPASSGEEFSTTLPILQ
                     EKQDTTNEQFNVLANAELVAVNSTPPADETQKGHKIYAANNGVAEKDENGNIKEYFRY
                     YDVPSTWTINAENTQDETVAAVYDVKEGSSNYMVQLYNINAFNQSPLEDGRNMTPEEL
                     EARMLETNHSFSEKTVVTINGQEWQVGRQLLTDQKLARLTFYRMESTAAYDDSVVVGS
                     IYYSLDPGTDKDRTNLKKVIGQVKDVVYQIAKK"
     gene            10761..>11050
                     /locus_tag="U1087_001270"
     CDS             10761..>11050
                     /locus_tag="U1087_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEM4755747.1"
                     /translation="MSYSFQNPSQDIIFDYLKNAKTIAVVGLSSREETAAYRVSKLMQ
                     EAGYKIIPVNPKAAGGTILGELVYSSLAEIDQPIDIVDVFRRSEFLPEVAQE"
BASE COUNT         3230 a         2242 c         2572 g         3006 t
ORIGIN      
        1 caggctctgc aaaccatggg actagaagtt gtcatgctga caggagataa tgaaaaaact
       61 gcccaggcca ttgccaagga agtcggcatt gagcaggtgg tcagtcaggt catgccagat
      121 gacaaggcca aacaagtcaa gttcttacaa gaacagggca agacagttgc catggtgggg
      181 gatggcatca acgatgcccc agctctagca caagcccatg tgggtctagc cattggttca
      241 gggactgata ttgccattga gtctgccgac attgtcctca tgcatagtga cattttggat
      301 gtggtcaagg ctgtcaaact cagccaggca accatgagga ccatcaagca aaatctcttc
      361 tgggcctttg cttacaatgt gattggtatt ccaatagcca tgggtctgtt acatatattt
      421 ggtggacccc tgctcaatcc tatgtttgca ggtgcagcca tggccctcag ctcagtgtcc
      481 gtcgtcttga acgctttgcg gttgacaacc tacaaactat agcaaaaata ccagtcaaaa
      541 aactggtatt tttttacata aacgcttaca atgtatatat taagtgcaag ggagatgttt
      601 atgacaacct ttattggaaa accggtgacc ttggtaggtc cgcagttgcg agtgggagac
      661 acggctcctg actttgtcct catggccaat gacttgagct tgaaaagtct gaaagacttt
      721 ggcaagcaga ccaaggtcat cagtgttgtg ccttctattg atacagggat ttgtgatacc
      781 cagacccgtc gcttcaatca ggaactggct gatcgtgaca atacggttgt catcaccatt
      841 tcagctgacc tgccctttgc ccaaaaacgc tggtgtggcg ctgcaggttt ggaggatgcc
      901 atcaccttgt ctgattacta tgaccatgcc tttggtaaat cctatggtgt gctcatgcga
      961 gagtggaatt tgctggcgcg tgcagtcttt gtcctcaatg ctgataatga aattacctac
     1021 atagaatacc tggacaatgt caacgaacat ccagactatg atgcggcttt ggaggctgtt
     1081 aaataaagat ataacggtgc cggaacaggc atcgtttttt gatggaatat ttttgtctaa
     1141 tttgatatac taaatttatc aaaaacaagg agggtctttt atggaaaaga cacagattat
     1201 tcaagatgtt ttggccctca ttcaagactt gaatcaggcc tttcaagcag ataaagtagg
     1261 aacagttgat gagcagcgat tgcaacataa tctgacagag acgacacgca tattgtcgga
     1321 ggccgagtct gttaccaata cagaactgat tgcgattgag aaattttatc gttcgaccag
     1381 ttttttggtt ggactgggcg acctgcgatt gagtgaaacc agcaggcagg cttggcgggc
     1441 atttgaccga tattactacg aaacgatcag agaagaactc aaactctatg gcggctctgc
     1501 aattgcccaa gtgtaaaaga tgaaggagag ggtgaaaacc ctcttttgtg ctataataag
     1561 tagtaagaat acagttgtta ggaagagaag aagcgaggtg tgccatgtcc tacatccaag
     1621 taaagaattc gtcaaaatac tatcaaatgg gggatgcgac cattgtggcc aatgacagcg
     1681 tgtcctttga gattgagcag ggtgagttgg tcatcattct gggttcatct ggtgcgggca
     1741 aatccactct gctcaatatc ttaggtggca tggatagcaa cgatgagggg gaggtttgga
     1801 ttgacggtgt ggatatcgcc aagctttcaa gtcatgaact gaccaattat cgtagagatg
     1861 atgtaggttt tgtctttcaa ttttataact tggttgccaa tctgaccgcc aaggaaaatg
     1921 tggaactggc tgcggaaatc gtcaaggatg ccttggatgc cgaggaggtc ttggaacaag
     1981 ttggactagg ccatcgtatc aataatttcc ctgctcagct ttcaggcggt gaacagcaac
     2041 gggtggccat tgcccgtgct gttgccaaaa agcctaaaat tttgctttgc gatgaaccaa
     2101 ctggcgctct ggactaccaa acaggtaagc aggtcttaca aatcctacaa gatatgtccc
     2161 gcaagcaggg ggcaacggtg attatcgtga cccacaatag ttccctagcc cctattgcag
     2221 acagagtgat tcgaatgcgg gatgcccgtg tacactccgt tgagttacac gcagaaccac
     2281 aggatattgc aagcctagaa tattagtggg tgaaactatg aaaaagaaaa tctactggaa
     2341 ggatatgaga caatctctgc tttcttccaa ggggcgtttt ttgtccattt ttagcctgat
     2401 gatgctagga gctctagctt tgacaggtct gaaagtaaca gctcccaata tggaaaagac
     2461 ggcccaagcc tatatcgctg accataggac aatggatttg gcagtaattt caggtctggg
     2521 acttagtcaa gctgaccttg acgaattaga aacgatagaa ggtgctactc ttgaagcggg
     2581 ctactttaaa gatgtggtta ctaatgaagg acagactgca attcggctgt tttcagctcc
     2641 caagacccta tcgacctata agctagtaga aggggaaatg cccagccaaa aggggcaaat
     2701 agccctatca gcttctttaa aaaatcgtta caaattggac gatactgttc aagtgacgga
     2761 gtctgataag gatggaaaaa tcttgacaca gacaagtttt actcttgtgg gctttgtcgc
     2821 atcagcagaa atttgggaca atgaaaccat gggcatggct gcaagtggtg atgggcagtt
     2881 aggtggttat ggccttgtta gtcaggatac cttcaaatca gaagtttaca ctattgcccg
     2941 tattcgctat gatgatttgg ttgatttacc atattacagt caggcctatc aagacaggtt
     3001 ggaccagcac caagaagact tagaaaagtt attggctaac aatgatgaac aacgattggc
     3061 aactattcag tcagatggac agacagatat ttcaaaaggg gaagaggaaa ttgctcaggc
     3121 tcagtcccag cttgaacagg ccgagtcaga actggaaaca ggggaggagc aattagcgac
     3181 aggtcgtaga gagtttgcgc gtggtagggc taaggttgtc caaacggaag ctgaattacg
     3241 agctgcccaa gcccaactat taaaaaataa gtttgaattg gaagaaagta aaaaggaatt
     3301 ggacgggcgt aaggctcaat tagaacagac tgcttcgttt ctagacggct atcagatgga
     3361 attagaaatg tcagcccagc agttagaaga ggccaagcaa gaattggatt cccaaaatgc
     3421 ccaactgagt cagaccgcat ctcagatttc cacagggcga gctagttggt ttcaagctca
     3481 gcaagagtta gaccttgaaa ttgccaatca cttgcaagaa ggtcaaaccc tctcagacta
     3541 tcctgacttg ttggctagac aggaaggttt ggatgttgag aaaagccgat tagaccaaat
     3601 ggaatctgca catgagcagg ccaaccaagc ctatttacaa ggttatgatt actatcaaac
     3661 caaacaaaat gaatacaata gcaatctagc ccagtaccaa acttggaatc aagaatatca
     3721 ggcaggtttg gcccgttatc aagcaggttt gagtcagtat gaacaaggca ttgcagccta
     3781 caataaagga gtagaagact atgaatgggg actgagtcag ttagagtctt caaatcaact
     3841 gctccgtcag gaagaactcc gtttggagga ggctgataaa gagttaagtc aagctcaatc
     3901 ccaattttct gataagaaag ctgcggccga tcaagaaatt agccaagctc aaaccgagat
     3961 tgctcaggct aaatccgact taagcaagct ggaaaaagcg ccctatcagg tctatactcg
     4021 atcaagccta ccaggtggag atggctatac tacctatagc aatgcgacta ggtctattgc
     4081 tgcagtgggc aatgtcttcc cagttgttct ctaccttgtc gcagctctag tgacttttac
     4141 caccatggcc cgttttgtcg atgaagagcg aacacagtca ggtctcttca aggcccttgg
     4201 ttatacgaat agacagatta tggctaagtt cattctctat ggtttggcgg caggtctggt
     4261 aggaacaata gtcggtataa tagcaggtaa tctcctcttg tctccactta tttccgacat
     4321 tattacgcag acaaccgtga ttggaccagc taaacttcat ttttatcccc tttggacagg
     4381 tttagccttg ctcctatctt tggtttcctc ggtcctgcca gcttacttgg tggctcgtcg
     4441 ggagctgaca gaaaaacctg ctcagctact tttacctaag ccaccggtta caggctccag
     4501 catttggctt gaaaaatggc cggctatctg gtctcgtcta agctttaccc ataaggtgac
     4561 agcccgcaat atcttccgct acaagcttcg tatgcttatg accatctttg gagtagcagg
     4621 gaccgtcgcc cttctttttg gaggactggg tatccgttcc tccatctcag gagttgtcca
     4681 acgacagttt ggggagctaa tccattatga tatgttggtg gtggaaaata gtagagctac
     4741 tgaggaagag ttggataagt taacacattt tcttcagtca gatcaggttc gccaatcctt
     4801 gccagtggct tttgaacagc tccatcaaac ggtggaagaa aacggtcaga gaaagaatct
     4861 atcgattagt ctctacattt cagaccgtcg ggattttgga aatcaagtca gtctggaaag
     4921 ttcgacaggt cagcctatta aactgagtga cagggggatt gttctcacag aaaaattggc
     4981 gcaaatctac ggggtctctg ttggtgataa gttatcactg accttggaag ataaggaagt
     5041 ttcagtcagg gtagaggctg tggctgatat gtacgcaggg cattttatct atatgacaga
     5101 tagctactac gaacaagtga ccggcaagca gaagactgcc aatgcctatc tggttcagtt
     5161 gaaagacagt cagttggggc atattcagac tcttgcaagt caactcctag cgatgccagc
     5221 agtcagaagt ttggttcaaa atacttctct tatagacatg cttaccacga ttgcaggctc
     5281 gcttcagacc atcatgacca ttctagtcat tctatccatc ttgcttggct tggttattct
     5341 ttacaacctt acaattatca atatgtccga acggattcgt gaattatcca ccatcaaggt
     5401 actgggcttc cacaataaag aggtgaccat gtacatctat cgtgaaacca ttgccctttc
     5461 gctgattggt atgttggttg gactggttgg tggtatttat ctccataagc tccttcttgc
     5521 catgattggt tcggacagta tccgcttcaa tccatctgtc ggactagaag tctatctcat
     5581 tcctatctta gccattagtg gaattttggc tgctcttggt tggtacgtca atcaccatct
     5641 gagaaaggtg gatatgctgg aggctttgaa gtcagttgat taaaacagtc tgggaataga
     5701 ctgttttaac ccgagcctaa aaacacgaaa gcggatagtc tgtattgtga actaatttga
     5761 aatatgagaa acacagctat aaagcaaaaa aaatcctagt gcatctagga tttttctgta
     5821 aacacaagtc tagaagtgtg ctataatcat ctcatgaaaa aaataagtga tttaggatta
     5881 acaggtcgaa aattagttag agaaggtcta atcttagtct tcatcggtat tggattttta
     5941 attgctggtt ggcaatttcc aggactgatt cttcgatttg ttcacgcagg tttattcttt
     6001 ttggctttat atgaattgag catgacattt ttcagaaaga agaaatcaag tgaaagtgtc
     6061 attgcgctag ttgggaaggc tgttcttttc gggatcctag ccagtctcga tttagctgtt
     6121 caaattcccc tctatttcgc ggctattttt gttgggattt atcaactttt tacagctctt
     6181 atcaatttca ttacttttta cctatatcga aaagatgggg tacagccacg gattcgctat
     6241 ttaatagatg gaatttggtt atccttacta ggttcagctt ccctatttgt gtcaggcaca
     6301 cagctggttg ttcaaacaat tgtcatcgga ggttatctga tcttgtatgg actaactaat
     6361 ctgcgtgatg gtttcttgtt tgaggaggcg attgagcaac aaaatcttaa gcgccatgtc
     6421 cgtttgcccc tacctttatt tttggcagct ttgattcctc gtatgaccct gcaaaaagtc
     6481 aatgattact tggcggataa taagggacaa acggctcagt ctatctacaa ccgccacaaa
     6541 gaaattgcgg agcttccagc attagaagtc tttgtacacg ttggggaaga agggttcgga
     6601 gcagttggac atgttgattt gagttacaaa ggacaggttt atggttatgg ttcatacgat
     6661 gtcctgtctg agcgtttggg tggtgcgatt ggtgatggag tcttgttcaa agcagagcgc
     6721 caagcttata ttgatttctg taaccaggaa ggtatgacca tgttgggtta tcagctaagc
     6781 ctgacacctg aacaggaaga agcagttgag gctcgattgg ctgaaattga taatctgctc
     6841 ttaccttgga atccaagtcc tgaaaaagta tcgaaaacgg cagacggcca gcctatcgaa
     6901 atgtatgcct atcgaatgaa agaggaaatt ggggcagcac ttttcaaatt taaaaaatca
     6961 aaattcaaaa cctactttgt cctctcaacc aactgcgtcc ttttggctga ttcagtaatc
     7021 ggtcaagcag gaacagatgt cctaggcttg cgcggcttca ttgctccagg aacctaccaa
     7081 tcttacctag atcaagaata tgagaaacct tatagtttag tagtcgcaaa gaacatttat
     7141 tatcgaaaat agaaatccta gtcactgact gggattttct gttatttcag ctctctaagt
     7201 cccacaaaac tcccccatcc atgctataat agagacatga aaaaaaataa attactactc
     7261 atcgatggct cttccgtagc cttccgtgcc ttctttgcac tttataacca aattgaccgc
     7321 ttcaagaatg ccaacggtct gcataccaat gccatatacg gcttcaatct catgttggac
     7381 cacatgatga agcggattga gccgacccac attcttgtgg cttttgatgc tggaaagacc
     7441 actttccgta cggagatgta tgcagactat aaggcaggtc gtgccaagac tccagacgaa
     7501 ttccgtgaac aatttccctt tatccgtcag atgttggatg ccatgggggt caaacactat
     7561 gagctggatc agtacgaggc ggacgatatt atcggtacct tggacaaaat ggcagagcgg
     7621 acagacattc ccttcgatgt gaccattgtc agcggtgaca aggacttgat ccagctgact
     7681 gatgagaaca ccgtagtcga aatttccaag aaaggcgtag ccgaattcga agaatttacc
     7741 ccagcctacc tcatggaaaa aatgggcatc actcccactc agtttattga cctcaaggct
     7801 ctaatgggcg ataagtccga taatatccct ggcgtgacca aaatcggtga aaaaacaggt
     7861 ctaaaactcc tgacagaatt tggttctttg gatggtatct acgaaaacat tgacagcatg
     7921 aaggcatcta agatgaaaga aaacctgatt gcggataagg aacaagcatt tctttctcga
     7981 acccttgcca ccattgacac caatgctcca atcgaaattg gtctggatga cattgtttat
     8041 caaggtccaa agctagaaga actaggacaa ttctacgatg atatgggctt caagcaatta
     8101 agggatcagt taggtacgac cagctcgcaa gaggaagcgg tactcgattt ccaaatcgta
     8161 acggaaatca gccccgctat gctcaaacaa gaccagtttt tctattttga aatcttgggt
     8221 gaaaattatc accgagagga tttggttggt ttagcttggg gagataagga taaaatctat
     8281 gtcggagggc ctgagctact tgatagtcca gtcttgcgtg actttttaga aaaccaaacc
     8341 ataaaaacct atgactttaa gcgtggaaaa gttcttcttg accgaaaaga gattacgcta
     8401 cctccagcta ctttcgatag tcgtctagcc aaatacttgc tttccaccgt tgaggacaat
     8461 tccctaacaa ccattgcaaa cctctatggt cagaccagcc ttgttccaga tgaggcagtt
     8521 tatggcaagg gtgctaagtt agacttgcca gaacgcgaga tctttttccc acacttggca
     8581 cgtaaggttc aggttttgat tgagacagaa gagccgatgt tgaccaaatt agaagaaaat
     8641 cagcaattag atcttttgtt tgacatggag ttaccactgg caaatgtttt agctaagatg
     8701 gaaattgcgg gtattaaagt ggaagctgag actctcaaag ctatgcaatc tgaaaacgaa
     8761 gttttgattg accagttgac caaggaaatc tatgaactag ctggtcagga atttaatatc
     8821 aattcgccta agcagcttgg gaccattctc tttgaagaga tgggattacc gttggaatat
     8881 accaagaaaa ccaagacagg ctattcaaca gcagtagatg tcttagaacg attagcacca
     8941 attgcaccag ttgtttcaaa aatcttggaa taccgtcaga ttaccaagct tcaatcaact
     9001 tatgtagtcg gcttgcagga tgccatttta gaagatggta agatccatac ccgctatgta
     9061 caggatttga cacaaacagg tcgcctatct tcgacggacc ctaacttgca aaatattcct
     9121 gttcgtctag aacaagggcg cttgattcgt aaggcatttg tgccatcgct tgaaaatagt
     9181 gtccttttag catcggacta ttcacagatt gaattgcgcg tcttggctca tatttctcag
     9241 gacaagcatt tgattgaggc cttccagcaa ggtgcagata ttcacacttc gacagctatg
     9301 cgggtcttcg gtatcgaaaa agctgaggat gtgacaccaa atgaccgtcg gaatgccaag
     9361 gctgtaaact tcggtgtcgt ctatggtatt tcagatttcg gtctatccaa taacttgggg
     9421 attacacgta aggaagctaa agcctatatc gatacctatt ttgaacgctt cccaggaatt
     9481 aagaattaca tggaaaccat tgttcgtgag gcacgtgata agggttatgt agagacgatt
     9541 tacaaacgcc gtcgtgaatt accagatata aactctcgca attttaatgt ccgtaatttt
     9601 gcggaacgaa cagccatcaa ctcaccaatt caaggttcgg ccgcagatat tctcaaagta
     9661 gccatgatta atctcgacaa ggctttgact gaagcaggtc ttgcgacacg tatgttattg
     9721 caagtacacg atgagattgt tttggaagtc ccagtggcag agctagaaac ggtaaaagcc
     9781 atggtaaaag agaccatgga atcagcgatt agcctgtctg taccattgat tgtggatgaa
     9841 aatgagggac cgacatggta tgaagctaag taagaaagga agagtatgaa aaagatagtt
     9901 ctttgtattg gtctatgtag tcttctgctc gcaggttgtg gaaaaacagc gcagaaggca
     9961 gagaaaacac cagcttcctc aggggaagag ttttcaacca ctttaccgat tttgcaagaa
    10021 aagcaggata ctacgaacga acagttcaat gttctagcaa atgcagagct tgtagctgtt
    10081 aatagtacac cacctgctga cgaaacacaa aaaggccaca agatttatgc ggccaataat
    10141 ggtgttgctg aaaaagatga aaatgggaat atcaaggaat atttccgtta ttatgatgtg
    10201 ccatctactt ggacaattaa tgcagaaaat actcaggatg agacagtcgc tgcagtctat
    10261 gatgttaaag aaggttccag caattacatg gtccaactct ataatatcaa tgcttttaat
    10321 cagtctccat tggaagacgg tcgcaatatg acgccggagg aattagaagc acggatgctt
    10381 gaaacaaatc attctttcag tgaaaagacg gttgtcacaa tcaatggtca ggaatggcag
    10441 gttgggcgac agttattaac agatcaaaaa ttagctcgtc tgacttttta tcggatggaa
    10501 tcaacagctg cttatgatga ctccgtggtt gtgggttcaa tctattattc cttagatcca
    10561 ggaaccgata aagatcggac caaccttaaa aaggttatcg ggcaagttaa ggatgtcgtg
    10621 taccaaattg ctaaaaaata atcaaggtag acaagctata atcagtaacg agttgaaatt
    10681 gacaagattg tgttatagca caccttattc attaagcttt tattgagtct aacatttaat
    10741 atacattaaa ggaggtctct atgtcttatt ccttccaaaa tcctagtcag gacattatct
    10801 ttgactatct gaaaaatgct aagaccattg cagtggtcgg tttgtctagt cgagaagaga
    10861 cagcagccta ccgcgtttcc aagctcatgc aggaagcggg ctataaaatt attccagtta
    10921 atcccaaggc tgctggtggg actattttag gcgagttggt ctatagtagt ctagcagaga
    10981 ttgaccaacc tattgatatt gtagatgttt tccgtagaag tgaattttta ccagaggtag
    11041 cacaggaatt
//
LOCUS       DASFRC010000072        10966 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.072, whole genome shotgun sequence.
ACCESSION   DASFRC010000072 DASFRC010000000
VERSION     DASFRC010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10966)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10966)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10966
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.072"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(89..937)
                     /locus_tag="U1087_001271"
     CDS             complement(89..937)
                     /locus_tag="U1087_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEM4755748.1"
                     /translation="MTSGTADLKRFAKEIRYHTLATLNQLGFGHYGGSLSIVEVLAAL
                     YGEILDIRVQNFSSKERDHFILSKGHAGPALYSTLYLKGFFDRDFLLSLNQNGTHLPS
                     HPDRNLTPGVDMTTGSLGQGMSVATGVAYGKKIEQSSYYTYTLVGDGELNEGQCWEAA
                     QFAAHHELSKLILFVDDNKKQLDGRTHDICQTFDFVEKFQAFGWESVRVNGADIDAII
                     NAILTMKSSKSPQPKCIVLDTTKGQGVTFLEELESNHHLRLSGQLREDLEQVTLVLAR
                     ELEVTK"
     gene            complement(939..2285)
                     /locus_tag="U1087_001272"
     CDS             complement(939..2285)
                     /locus_tag="U1087_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIC"
                     /protein_id="HEM4755749.1"
                     /translation="MILDFLIDIAKTPAILVALIAILGLALQKKPAADLIKGGLKTFV
                     GFIVVGGGANIIVGSLEPFGQMFEQAFNLKGVVPNNEAIVAMALDKYGTATSLIMLLG
                     MVFNIAIARFTRFKYIFLTGHHTLYMACMIAVIMSVAGFTSVGLIVMGGLALGLIMTL
                     SPAFVQKYMIQLTGNDHVALGHFSALGYWLSGVVGGLVGDKSKSTEDINFPKGLAFLR
                     DSTVSIAISMSLIYMIVALFAGGDYIKENLSGGTNSMIYALTLGGTFAAGVFVILSGV
                     RLILAEIVPAFKGISEKLVPNSKPALDCPVVYPYAPNAVLIGFISSFAGGIVSMIILA
                     LTGGVVILPGVVPHFFCGATAGVMGNASGGVRGAVCGAFMQGVLISFLPVFLLPVLGD
                     LGFAGSTFSDADFGLSGIFLGILAKNGGILTVSVGIFAVLALMLGLSLVKKEQKEG"
     gene            complement(2339..2623)
                     /locus_tag="U1087_001273"
     CDS             complement(2339..2623)
                     /locus_tag="U1087_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016397350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM4755750.1"
                     /translation="MLRIGTACGSGLGSSFMVQMNIESILRDLGVSDVHVEHYDLGGA
                     NPSEADVWIVGRDLADSATHLGDVRILNSIIDMNELRELVTAICQEKGLV"
     gene            complement(2625..4667)
                     /locus_tag="U1087_001274"
     CDS             complement(2625..4667)
                     /locus_tag="U1087_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM4755751.1"
                     /translation="MVDNRTMAILMELFATRKESLYELSIQTGIEKEQLHSNLELVNQ
                     LLQEHSFPQIQYKDSEFVISTELYNQKESVFSLFRNRQIYLSQEERQLLIYLYTFIRK
                     EFVSNVHYQELLSVSRNTTLTDIKNVKELCLDFQVRLEYTRAKGYHLIGREEDKHRLA
                     LYALSNCLQSSVGVWALDYILKSWGEENPIEELKIVSQQACNYYKVSALEERLDEYLY
                     FLIFLFIRQARVGNLINWNFEGKGGVVKDFLQRLWKLLRLKSTSTLELNAATQEYLSH
                     LLQGCLEGEGGEKDDLFYHLTVEIVEEMERLSLIAFEHRSEMIEGLQRHLIPAYYRLT
                     SRLVNVNSYTETIKEEHADLFYLVKKALRPLEEHLGFTIPDSEVSYFVIHFGGYIEAG
                     QQRSYRYRALVVCPNGVSSSLIVKENLRQLFPNIYFADTHSLQDWKMLDMTDYDMVFG
                     TIKLDIELPFFLVSQLMTSNHKKELFHLVNQHFPNAAYFPIEIEQLLSLVGKHATIHQ
                     EQALKYELVQFLNQRSYEQRGRSPMLEELITKETFQWSEEVLDWQKAVALAARPLVDK
                     GAIETRYIDAMIAKVEEFGPFIDLGKGIAIPHARPEDGVNEVGMSMLVLDKPVYLLDD
                     PSHEIRLFICIAAVDNQTHLRALSHLTKILREEENIQQLVGAKEFTDVQHLLKEEQ"
     gene            complement(4988..5482)
                     /locus_tag="U1087_001275"
     CDS             complement(4988..5482)
                     /locus_tag="U1087_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF536 domain-containing protein"
                     /protein_id="HEM4755752.1"
                     /translation="MGIEKTVSELAEILGVSRQAMNNRVKSLPEEFVDKNDKGVTVVN
                     RAGLIKLEEIYKTTIFEDEPISDEVKHRELMEILVDEKNAEIIRLYSQLKAKDKQLAE
                     KDEQLKVKDVQIAEKDKQLDQQQQLTLKAMADKEVLKLELDEVKAQAEEVQAKGFFAR
                     LFGK"
     gene            complement(5652..7052)
                     /locus_tag="U1087_001276"
     CDS             complement(5652..7052)
                     /locus_tag="U1087_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM4755753.1"
                     /translation="MVTEQREYRFPEGFLWGSSTSGPQSEGSVAGDGKGWNNWDYWYS
                     QEPKLFHQQIGPEQTSTFYEHFQSDLDLLVETGHSIFRTSIQWSRLIPEGIGEVNPQA
                     VEFYRAVFAGIRERGIKLLVNLYHFDLPYVLQEKGGWENKEIVWAYEAYARQCFSLFG
                     DLVDHWITFNEPIVPVECGYLGSYHYPCKVDAKAAVVVAYHTQLASSLAVRACHQLHP
                     DHKISIVLNLTPAYPRSQSPEDLQAARIAELFQTRSFLDPSVLGQYPRELVDILEKHG
                     LRPETTEEELTIIKENRVDFLGVNYYQPLRVQTPSEDGWNGEATFLSQYFQPYDKPDK
                     KINPHRGWEIYEEGLYDIAKNIQENYGNIEWLVTENGMGVEGEDVFEENGMIQDDYRI
                     HFMEDHLIQLHRGIDEGANCKGYMVWTFIDCWSWLNAYKNRYGLVSLDLQTQKRTVKK
                     SGYWFKQVSAKNGFIR"
     gene            7290..8462
                     /locus_tag="U1087_001277"
     CDS             7290..8462
                     /locus_tag="U1087_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015632253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM4755754.1"
                     /translation="MNTVDTIIIGAGPAGMMAAISSSFYGKKTLLLEKNKRLGKKLSG
                     TGGGRCNVTNNGTLEDLLAGIPGNGRFLYSVFSQFDNHDTMNFFQENGVKLKVEDHGR
                     VFPTTDRSQTIIKCLEMKMLENGVNIRTGTEVVSVRKIDDLFHVKTSEETFTAPQLIV
                     TTGGKTYPSTGSTGFGHDIARHFKLEVTEIEAAESPVLTDFPHKKLQGISLDDVTLTY
                     GKHVITHDLLFTHFGLSGPAALRLSSFVKGGETAFLDALPTHSDQDLFEHLEANREKS
                     VKNALRELMPDRLADFFAENYDCKVKQVSQKDLTDLVSLLKALPIKITGKMSLAKSFV
                     TKGGVDLKEINPKTLESKKVPGLHFAGEVLDINAHTGGFNITYCLATGWVAGSLHY"
     gene            8556..9254
                     /locus_tag="U1087_001278"
     CDS             8556..9254
                     /locus_tag="U1087_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4755755.1"
                     /translation="MQLKLSSISKKFDHKIILEDANFQFEQGKIYGLLGRNGAGKTTL
                     FNCIARNLTLDNGSIQFVKGEETLDYDNTDIGFTQTYPQLPAFMTAYEFVRFYMDIHK
                     DKLKSPRSPEEWLNLVGIGEEDQHRLLKDFSHGMQNKVQLLLSLIVQPPVLLLDEPLT
                     SFDPVAAHEFKQLIREAKKDSVIIFSTHILQLAQDLCDEIVLLHHQKLQAVPSEKLHD
                     PDFEQEIVALLTAD"
     gene            9264..10886
                     /locus_tag="U1087_001279"
     CDS             9264..10886
                     /locus_tag="U1087_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755756.1"
                     /translation="MKTILRYSWYQEKYNLHRSVNGLFYYLRKLPLVGKCIPESIFKS
                     YSFKSSLFLVLHILSIPSRFLIKGFWLLFHFYHASFWMNMLVNGELTFWKILPNTWLL
                     GFMFWLLFVGLSYRLGKSLDPVISKADREFMQNFSLSQSSFLQSQLFIEPILTTIYYL
                     PALTIFCMITKEWLVFPIGLMTVLAGHLAGHALNRLLFEHRIFSRHNSWHAWLWIAFV
                     FVLYVLVIVFRNQLSLGMLVPILLVQPFLIWFSYGYLKQQTNHLDYLSYCMDESLQMD
                     KKLFEMTKGNEYTRQGLQMQAKLNAKTGKDLSHLSGMTYLNALLFDRYKKVLYKKVQN
                     WVLAVVVILAALEGIRYFLDPFTFTEAYLLQFLPLSFMIMYVASSGKVVAQMVFVNCD
                     ISMLHYPFYREAKTIIAGFNYRFLQTCKLNLIFATSLFLAIMVLGRFAFSLETILLTA
                     LLLISLTALFSFHDLFIYYILQPFTNDMDVVNPLYKFLSGALYWVAYLNTRINVGSHT
                     YILLVSLAMIAYVSIGYWILLKKAPQTFRLKA"
BASE COUNT         3141 a         2664 c         1978 g         3183 t
ORIGIN      
        1 tctgcctcaa tagctgctat ggttgtgtct tcctgcccta cctgagctag aaaatcacta
       61 taaaccagtc gcatctcctt tgtctgtctc atttcgtcac ctccaactct ctcgctaaaa
      121 caagagttac ttgctctaaa tcttcccgta attgacccga caaacgcaaa tggtgattgc
      181 tttctaattc ttctaagaag gtaactccct gccccttagt agtatcaaga acgatacatt
      241 ttggttgtgg agacttactt gacttcattg ttagaatagc atttataata gcatctatat
      301 cggccccatt cacacgcact gattcccaac caaaagcctg aaatttttca acaaaatcaa
      361 aggtttggca aatatcatgg gtacgaccgt ctagttgttt tttattgtca tccacaaaca
      421 gaatcagttt cgatagttcg tggtgggctg caaactgagc tgcttcccag cattgacctt
      481 cattcaattc cccgtcccct accaatgtgt aggtatagta tgaggactgt tcaattttct
      541 taccgtatgc taccccagta gcgacactca tcccttgccc caacgaacct gttgtcatat
      601 ccacccctgg cgttaagttt cggtcagggt gtgaaggcaa atgtgttcca ttttgattta
      661 gcgacaagag aaaatctcta tcaaagaagc ctttcaaata caacgtacta taaagtgctg
      721 gacctgcatg ccccttggac agaataaagt gatctcgctc cttagaagag aaattctgga
      781 cacgaatgtc cagaatttct ccatatagag cagccaacac ttctacgatt gataagctac
      841 caccataatg accaaatcct aattgattca aagtcgccaa ggtatggtag cgaatttctt
      901 tggcaaatcg tttcaaatca gctgtaccac tagtcatatt atccttcttt ctgttctttt
      961 ttcaccaatg acaatccaag catcaaggcc aataccgcaa aaataccaac agaaactgtg
     1021 agaataccgc catttttagc aagaattccc aagaaaatac ctgatagacc aaaatctgca
     1081 tctgagaatg ttgaacctgc aaaaccaagg tctcccaaaa caggaagtaa gaatacaggt
     1141 aagaaactaa tgagaacccc ttgcataaaa gcaccacaaa ctgcgccacg aacaccacct
     1201 gacgcatttc ccatgacccc tgcagtagct ccgcagaaga aatgtggtac gacacctgga
     1261 aggataacga caccgccagt caaggcaaga ataatcatgc tgacaatacc acctgcaaaa
     1321 ctagagataa agccaatcaa cacggcgttt ggtgcataag gataaacaac tggacagtct
     1381 agggctggtt tggaattcgg aaccaacttc tctgaaattc ctttgaaggc tggaacaatt
     1441 tccgccaaaa ttaagcgtac accagataag ataacaaaaa cacctgctgc aaaagttcca
     1501 cctagggtca aggcataaat catactgtta gtaccaccac taaggttttc cttaatataa
     1561 tcaccgcctg caaacaaagc cacaatcatg taaatcaagg acatagaaat ggcaatgctg
     1621 acagttgaat cacgcaagaa tgccaaacct ttaggaaaat taatatcctc agtagactta
     1681 gacttatcac cgaccaaacc gcctactaca ccactcaacc agtaaccaag tgcactgaag
     1741 tgacctaggg cgacatgatc atttcctgtc aattgaatca tgtatttttg aacgaaggct
     1801 ggggagagtg tcataatcag acctaaagcc aacccaccca tcacaattag gccgacagaa
     1861 gtgaatcctg caacactcat gataactgca atcatacagg ccatatatag tgtgtggtgt
     1921 cctgtcaaga aaatatattt aaagcgtgta aagcgagcaa tagcaatatt gaagaccatt
     1981 ccaagcaaca taatcaagga tgtagcagtt ccatacttat ccaaagccat cgctacaata
     2041 gcttcattat ttggaacaac ccctttcaag ttgaaagctt gttcaaacat ttgaccaaat
     2101 ggctcaagcg agccaacaat aatattcgct ccgccaccaa caacaataaa accaacaaaa
     2161 gttttcaagc cccccttaat taaatctgct gcgggctttt tctgtaaggc taaacctaga
     2221 atagcaatga gagcaaccag aattgccgga gttttagcaa tatcaatgag aaaatccaat
     2281 atcattttct gtctccttta taattttatc tttgcgggtc atcccctgtg tatacaattt
     2341 aaaccaaacc tttttcttga cagatagccg tgacaagttc cctcaactca ttcatatcaa
     2401 taatactatt caatattcga acatctccta aatgagttgc agaatcagcc aggtcacgtc
     2461 cgacaatcca cacatctgct tcactcggat tagcaccacc tagatcataa tgctccacat
     2521 gaacatctga tacacctaaa tctcgcaaaa tggattcaat attcatttga accataaagc
     2581 tagagcctaa acctgaacca caggctgttc caattcgtaa catattactg ttcctccttt
     2641 aataaatgtt gtacgtcggt aaattctttg gcgccgacaa gttgttgaat attttcttct
     2701 tctcgcaaaa tttttgtcaa atgcgagagt gctctgagat gggtttgatt atctacggct
     2761 gcaatacaaa tgaacagccg aatttcatga ctagggtcat ccaatagata aactggctta
     2821 tccaatacca acattgacat ccctacctca ttaaccccat cttctggtcg tgcatgtgga
     2881 atcgcaattc ctttacctag gtcaataaat ggaccaaact cttctacctt cgctatcata
     2941 gcatcaatat atcgagtttc tatagctcct ttatctacca gaggtcgtgc agccagggca
     3001 actgcttttt gccagtctaa aacttcctca gaccattgaa aggtctcttt tgtaatcaat
     3061 tcttctaaca taggactcct tcccctttgc tcataggagc gctgattgag aaactgcacc
     3121 aattcatatt ttaaagcctg ctcctgatga atggttgcat gtttcccaac aagtgataat
     3181 aactgctcaa tctcaatcgg aaaataagcc gcatttggga aatgctgatt aaccaaatga
     3241 aataattctt ttttatgatt agaggtcatc agctgggata ccaagaaaaa tggtagctct
     3301 atatccagct tgatagttcc aaataccatg tcatagtctg tcatgtctag catcttccaa
     3361 tcctgtaagg aatgggtatc ggcaaaatag atattaggaa atagttgccg tagattttct
     3421 tttacaatca gcgaagagct cactccattt gggcaaacaa ccaaggcccg ataacgatat
     3481 gaacgttgtt gacctgcttc gatgtagcca ccaaagtgga tgacaaaata agatacctca
     3541 ctatctggta tagtaaaacc tagatgctct tccaaaggtc gcaaagcttt ttttacaaga
     3601 tagaacaagt cagcatgctc ttctttgatg gtttcagtat atgaattgac atttaccaaa
     3661 cgagatgtta aacggtagta agcaggaatt aggtgacgtt gcaaaccttc aatcatttcc
     3721 gagcgatgtt caaaagcaat taaggacaaa cgttccatct cttccactat ttctacagtc
     3781 aagtggtaaa ataggtcatc cttttctccg ccctcacctt ctaagcatcc ttgcagtaaa
     3841 tgtgacagat actcttgtgt cgcagcattt aattctaatg tgctagtact ttttaaacgt
     3901 aataatttcc aaaggcgttg cagaaaatct tttacaaccc ctccctttcc ttcaaaattc
     3961 cagttaataa ggttaccaac acgcgcctga cggataaata aaaatatcaa aaaatacaaa
     4021 tattcatcca atctctcttc taaagctgag actttataat aattgcaagc ttgttgactc
     4081 actattttca attcttcaat aggattttcc tcaccccaag atttaagaat ataatccaaa
     4141 gcccacacac caaccgaaga ctgcaaacaa ttactgagtg cataaagtgc caagcgatgt
     4201 ttatcttctt ctcgaccaat tagatgatag cctttcgccc tcgtatattc caagcgtact
     4261 tgaaagtcca agcaaagttc ctttacattc ttaatatccg tcaatgttgt gttacggctc
     4321 acactcaata attcttggta gtgaacgttt gatacaaatt cttttcggat aaaggtataa
     4381 agatagataa gaagctgtct ttcttcttgc gaaagataga tctggcgatt gcgaaagagc
     4441 gaaaatacac tttctttttg attgtaaagc tccgtagaaa taacaaactc gctatctttg
     4501 tattgtatct gcgggaagga atgttcttgc aacaattgat tgactagttc caaattagaa
     4561 tgtagctgct ccttttcaat tcctgtttga atactaagtt cgtacaaact ttcttttcga
     4621 gtcgcaaaca attccatcag aatcgccatg gtacgattat caaccatatt ttcctccttg
     4681 tcttaattgt atcccttttc atttctgatt tctagagtct ttgagcccaa ttaacataat
     4741 aaaaaacaca aattcaattg tgctcactac ttaaactaaa aaagattggt tcccaccaat
     4801 ctttttatat cacatgtcat cttccatttt ttagtgcggg ctgaaacagt ctatccctag
     4861 actgtacctc gctttcttat ttccaagctc gggctgaaac agtctatccc cagactgttt
     4921 cactcccccg gacctttatt cgctctcttg ttttcaagct catgataaaa aggtcccccg
     4981 gaccttttta tttcccaaac aaacgtgcaa agaagccttt agcttgcact tcttctgcct
     5041 gtgctttaac ttcgtccaat tccaacttga gaacttcctt atcggccata gcttttagtg
     5101 tcaattgctg ttgctgatcc aactgtttat ccttctcagc aatctgcaca tctttaacct
     5161 tgagttgttc atctttttcg gcaagttgct tatctttggc ttttaattga ctatataagc
     5221 ggatgatttc agcatttttc tcgtcaacta aaatttccat caattcacga tgcttgactt
     5281 catcgctaat cggctcatct tcaaaaatgg ttgttttgta gatctcctcc aacttaatca
     5341 agccagcacg gtttacaacg gtcacaccct tgtcattttt atctacaaat tcttcaggaa
     5401 gtgatttgac gcgattattc atagcctgcc ggctcactcc taaaatttca gctaactcac
     5461 tgactgtttt ttcgattccc ataatatcct cggtacttac atttctcata gtttgtatca
     5521 ttaaaatatt accacagaac cctatccctg tcaaatctag gggaattttc ttaccaagca
     5581 ttagtggata atcacaaacc tcaaaagcat cttatctcaa tgcaatgtta tggagaaacg
     5641 aaatatacat tctatctaat aaaaccattt ttagcactca cttgcttgaa ccaatatcca
     5701 gattttttga cagtacgctt ctgagtttgg aggtcaagcg agaccaaacc gtatcggttt
     5761 ttataggcat ttaaccaaga ccagcagtca ataaaggtcc agaccatata gcccttacag
     5821 ttcgctcctt catcaatacc tcgatggagc tgaatcaaat gatcttccat gaagtgaatc
     5881 cgatagtcat cctgaatcat gccattttct tcaaaaacat cctccccttc aactcccatg
     5941 ccgttctccg ttaccaacca ttcgatattg ccatagtttt cctggatatt tttagcaatg
     6001 tcgtacagcc cttcttcata aatttcccag cctctatggg gattgatttt cttgtcaggc
     6061 ttatcataag gctggaaata ttgggatagg aaagtagctt ctccgttcca tccatcttct
     6121 gaaggagtct gcacgcgcag gggctggtaa taattcaccc ccaggaagtc aaccctattt
     6181 tctttgataa tggtcaattc ctcctctgtg gtttctggac gtaaaccgtg tttttcaaga
     6241 atgtcaacca gttccctcgg gtattgtccc aaaacagatg gatccaaaaa gcttctcgtt
     6301 tgaaatagct cagcaatccg tgctgcctgt aaatcttctg gactctgact tcttggatag
     6361 gcaggagtaa gattgagaac aatggaaatt ttgtggtctg ggtgtagttg gtgacaggcc
     6421 cgaacagcca aagaactagc cagttgagta tgataggcta cgaccacagc tgcctttgca
     6481 tccaccttgc aaggataatg atagcttcct agatagccac attctactgg aacaatgggt
     6541 tcattaaagg taatccaatg atccaccaga tctccaaaga gactgaaaca ctggcgagca
     6601 taagcctcat aggcccagac aatctcctta ttttcccagc cccctttttc ctgtaagaca
     6661 taaggcaaat cgaaatgata aagattgacc aaaagcttta tcccacgctc tcgaatacct
     6721 gcaaatacag ccctataaaa ctccacagct tgcggattga cctcgcctat cccttccgga
     6781 atcagacgtg accactgtat agaggtgcga aaaatactat gacctgtttc caccaacaaa
     6841 tccaaatctg actggaaatg ttcataaaaa gtcgatgttt gttccggtcc tatttgctgg
     6901 tgaaagagct taggttcctg actgtaccag taatcccagt tattccaccc ctttccatca
     6961 ccagctacgc ttccttcact ttgaggccct gaagtggagg agccccacaa aaaaccttct
     7021 ggaaaacgat actctctttg ctcagttacc attcttctac ctactttctt tcatgctaca
     7081 gacggagttg ttagaacctg gattcacaat gtagcttcca caaaattact ttgcttgtac
     7141 atacaggctc ctgataaaaa ctaatttccc ttagtctaag tatactcccc taacccgtca
     7201 atggtcttcc gcaatctcaa ggaaaaactc cacaaatcat agcaaagact caaactactt
     7261 tcttgataaa aatatgatac aataaaggca tgaatacagt agataccatt attataggag
     7321 cgggccctgc tggcatgatg gccgccattt cttccagctt ttacggcaag aaaaccctgc
     7381 ttcttgaaaa aaacaagcgt ctgggcaaga aactgtctgg cacaggcggc ggacgttgca
     7441 atgtgaccaa caacggcaca ctagaagacc tgctggctgg cattcctggc aacggccgct
     7501 ttctttacag cgtcttttcc cagtttgaca accatgacac catgaatttc tttcaggaaa
     7561 atggggtcaa gctcaaggtg gaggaccacg gccgtgtctt tccgaccacc gaccgctccc
     7621 agaccattat caagtgcttg gagatgaaaa tgttggaaaa cggcgtcaat atccgcacag
     7681 ggactgaggt ggtttccgtc cgtaagattg atgacctctt ccatgtcaag accagcgagg
     7741 aaacctttac ggcacctcag ctcattgtca ccaccggtgg caagacctat ccctccaccg
     7801 gctcgactgg ctttggtcac gacattgccc gccacttcaa gctggaagtc acggagattg
     7861 aagccgcaga aagccccgtt ctgaccgact tcccccacaa gaagctccaa ggcatttccc
     7921 tggacgacgt caccctgacc tacggcaagc acgtcatcac ccacgacctg ctctttaccc
     7981 actttggcct gtcagggccc gctgctcttc gcttgtccag ttttgtcaaa ggcggcgaaa
     8041 ctgcatttct cgatgctctg ccgacccatt ctgaccaaga tctgtttgag catttagaag
     8101 ccaacaggga aaaatccgtc aagaatgccc tacgagaact catgccagac cgcctagccg
     8161 actttttcgc ggagaactac gactgcaagg tcaaacaggt ctcccaaaaa gacctgactg
     8221 atctggtctc ccttctcaaa gccctaccga tcaagattac cggcaagatg tccttggcca
     8281 agtcctttgt gaccaaggga ggcgttgacc tcaaggaaat caatccaaaa acattagaga
     8341 gcaagaaggt cccaggcctc cactttgccg gtgaagtctt ggacatcaac gcccataccg
     8401 gcggctttaa catcacctac tgtcttgcaa ctggttgggt ggctggaagt ttacattatt
     8461 agtttttaca tcaaattcaa gcaaaatctg cttgaatttt tttgtttttt attgtatgat
     8521 aaaaccataa caatataaca aaaaggagat tggctatgca actgaaactt tcttctattt
     8581 ctaaaaaatt tgaccacaag attattctgg aggatgccaa ttttcaattt gaacaaggca
     8641 agatttacgg cttgctagga cggaacgggg ctggtaagac aaccttgttt aactgcattg
     8701 cccgtaatct gaccttggat aatggctcga ttcagtttgt gaaaggcgaa gaaactcttg
     8761 actacgataa tacggacatc ggctttaccc agacctatcc acaactacct gcctttatga
     8821 cagcctatga gtttgtccgc ttctatatgg acattcataa ggataaactc aaatctcctc
     8881 gcagtccaga agaatggcta aacttggtcg gtattggaga agaagaccag caccgtctgc
     8941 tcaaggattt ttcccacggt atgcagaaca aggtccagct actcctgtcc ctgattgtcc
     9001 agccacctgt ccttctctta gatgagccgc tgacttcctt tgaccctgtg gctgctcacg
     9061 agttcaaaca actaattcgg gaagctaaga aggattccgt cattatattt tccacccata
     9121 tcttacaact ggctcaggac ctctgcgacg agattgtttt gctccatcat cagaaattac
     9181 aggcagttcc aagcgaaaaa ctccatgatc ctgacttcga acaggaaata gttgccttgc
     9241 tgacagcaga ttaggagaaa cctatgaaaa caatattacg ttattcttgg tatcaggaaa
     9301 aatataacct ccatcggtca gtcaatggac tcttctacta tcttcggaaa ctgccgcttg
     9361 tgggaaagtg cattccagag agtattttca agtcttacag ctttaagtct agtctctttt
     9421 tggtcctgca catcttatcc atccccagtc gcttcctgat caagggcttc tggttgctct
     9481 ttcatttcta ccatgcttct ttctggatga atatgctagt caatggggag ctgacctttt
     9541 ggaaaattct cccaaacact tggctccttg gctttatgtt ctggcttttg tttgtcggac
     9601 taagctatcg tttggggaag agcttagacc ctgttatctc taaagcagat cgagaattta
     9661 tgcagaattt cagcctgtca caatccagct ttcttcaaag ccaacttttt atcgagccta
     9721 tcctgaccac tatttactac ctgccagcct taaccatttt ttgcatgata accaaggagt
     9781 ggttagtttt tcctattggt ttgatgacag tgctggcagg tcatctagct ggccatgccc
     9841 tcaatcgtct gctctttgaa catcgtatct tttcccgtca caattcgtgg catgcttggc
     9901 tatggatcgc gtttgttttt gttttatatg ttttggttat tgtcttccgt aatcagctct
     9961 ccttaggcat gctagtccct atcctgcttg tccaaccatt tctgatttgg tttagctatg
    10021 gttatttgaa gcaacaaacc aaccacctag actatctttc ctactgtatg gacgagtcct
    10081 tgcaaatgga taagaaactt tttgagatga ccaagggaaa tgaatacact cgccagggtt
    10141 tgcagatgca ggcaaaactc aatgcgaaaa caggaaagga cctgtcccac ctgtctggca
    10201 tgacctactt aaatgctctg ctatttgacc gctacaaaaa agtcctctat aagaaggtgc
    10261 agaactgggt cttggcagta gtcgtgattc tggcagccct ggaggggatt cgttactttt
    10321 tagatccgtt tacctttacg gaagcctact tgctccaatt cctaccgctt tccttcatga
    10381 ttatgtacgt agcttcgtcg ggcaaggtag tggctcagat ggtctttgtt aactgcgata
    10441 tttccatgct tcactatccc ttctatcgag aagccaagac tattatcgct ggttttaact
    10501 accgattttt gcagacctgc aagctcaatc tcatctttgc gaccagcctc tttttggcta
    10561 tcatggtgct ggggcggttt gcctttagtt tggaaaccat tctactaact gccctgctcc
    10621 tcatcagtct gaccgctctt ttttccttcc acgatctctt tatctactat attctccagc
    10681 cttttaccaa tgacatggat gtggtcaatc ccctctataa atttcttagt ggtgctctct
    10741 actgggtggc ctatctcaac acccgaatca atgtaggtag ccacacctat atcctgctgg
    10801 tttccctagc tatgattgcc tatgttagca tcggttactg gattttattg aaaaaagctc
    10861 cgcagacttt tagattaaaa gcatgaaaaa cagcctctcg caagagaagg ctgtttttta
    10921 ggtatgacgt gcatgtcgta tcaaaaaaaa tccaaagtcg aatgac
//
LOCUS       DASFRC010000073        10927 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.073, whole genome shotgun sequence.
ACCESSION   DASFRC010000073 DASFRC010000000
VERSION     DASFRC010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10927)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10927)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10927
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.073"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            150..1334
                     /gene="secY2"
                     /locus_tag="U1087_001280"
     CDS             150..1334
                     /gene="secY2"
                     /locus_tag="U1087_001280"
                     /inference="COORDINATES: protein motif:HMM:TIGR02920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system protein translocase subunit
                     SecY2"
                     /protein_id="HEM4755757.1"
                     /translation="MNKIQPGIRKLAVTAGIIMLFLLGRSLPLPFLQLDAYINPEEVN
                     SFNLAQISLFSLGLGPWMNATILLSLFTRRKSASESPRMAEYRKNALMLLIAVIQGLG
                     IAVSFSYTVSGSQLYQSIAGVTLVSVAGAFVISWLISLNSNFGVGGSAMLVLVNILVG
                     QLVTIPKVMELSGTYLTPYLWFGLLWILVTIYLIVVFEKAEYRIPVQRITINNTLADE
                     AYMPVKIFLSGGMSFMYSYTLFSFPQYVLVLLAYFFPQYGTIIKALGRYFSMLDWEGM
                     VVFLLILYVLTVSFAYINLNPTDKAEELRKSGDYIPGVRPGKPTKQYLSKIASRLGNF
                     NAFYLVVMSGIPMGISMIYPELRPIANLPGVVMMTASIFLTIIIEFRVMRLKKRYTSL
                     FK"
     gene            1348..2895
                     /gene="asp1"
                     /locus_tag="U1087_001281"
     CDS             1348..2895
                     /gene="asp1"
                     /locus_tag="U1087_001281"
                     /inference="COORDINATES: protein motif:HMM:TIGR03713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system protein Asp1"
                     /protein_id="HEM4755758.1"
                     /translation="MMMFYFIPSWYPEKRTWYDNTELWYRRNMSSYFDDTINQLRMFV
                     NVGEPSQLIVLNYMPNLRYYTHRYGLFEVPYWSVFDHIQGITGDDFQPLDYLDMEWPD
                     GIEFINSPFLVIARLKGQLFAQLEFGEEGNLVWIDFFDQDVQSKKMVFDDRGFLSSIL
                     YYQDGQPYYQDYLGKDGVYRIREYLLPDNQQVLINPTRQYHFLKNTYDSIEELLSEQL
                     ERFLSAQPKSTIVLAADGRHHETVAKAISRHTLVLSYFGNRFQVDSTSQLQVERLLSP
                     HLIVTDSLKMQQQLENMTSHPVHQVSLYDTRLALGKSQRLKELYIYFLLDGVHKTQWK
                     VALQEIFVAMKSNEYIHLMLVTYQSEKDYLDRLKEEIELELEQMPEEYLKLKENTKHQ
                     LFEVGDEEEEVERVAFTPLHSEVDIMVALDSVRLIIDLADEPNLYTQIAGISAGIPQV
                     NARQTEYVEHLKNGYILTDGGNLGAALNYYLDGLSHWNESLIYSVRKISDYTSGVLVE
                     KIKEKVE"
     gene            2898..4553
                     /gene="asp2"
                     /locus_tag="U1087_001282"
     CDS             2898..4553
                     /gene="asp2"
                     /locus_tag="U1087_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system protein Asp2"
                     /protein_id="HEM4755759.1"
                     /translation="MSKKKIHVLQVGTEDWSQAFAIPESLEWHYLPSDKLSDFLKEQE
                     TIEAKRREATALYEEFALQPEANEFYLQELEKMLKVELRTVAYSILLLSDKNYPAELT
                     KLDLLIDAHRLFYPSNWEAEDRTTANFLYKKVAQRYDWNKKEELIYTFSKALFSGQFG
                     QKITLAELEISTNFGGRIDYEGQNYVCLEGDFGQDFQQIAYYRYNIQAYKDVFLNLFL
                     NHVVEPSCAIKLNVQLIQDGSTATIVKEWSFEGKELREQLFLDPNENGYLFISIHAKG
                     NGLIKIGSCHQRWSRNGLGEFVLGGERLVDDDLQEIYTFFHPMDFTPPLCVYFSGFRE
                     AEGFEGYRMIRGLNKPFMLICDPRLIGGAFYLGSEDLEQQIVQKIQEKLDYLGFNSSQ
                     LILSGISMGTFGATYYGADLHPYGIVLAKPVLSLGEVALMEKVHRPGGFATSIELLKS
                     LYGDLSMASAERLNNRYWDKMTEGVFKNTQFAITYMKNEDYDASAFEKMIHYSKSTGA
                     TIHARGIAGRHNDAFGSIYGWFVNRYKAMIKNGFDTKEEAHES"
     gene            4543..5493
                     /gene="asp3"
                     /locus_tag="U1087_001283"
     CDS             4543..5493
                     /gene="asp3"
                     /locus_tag="U1087_001283"
                     /inference="COORDINATES: protein motif:HMM:TIGR03711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system protein Asp3"
                     /protein_id="HEM4755760.1"
                     /translation="MKVSIRWKYFIRSAYSYGSTLRFEDGKVYFENPLMPPSFELNRW
                     ESLTNFQSRRVQPQLPLLKKGVTYRLDLKASVYPTASVYVQVEFFNRYREKIDFVILK
                     DSSSEFTYPKEAYSYEIALINAGCSEMEFTELILEEKCTISDTLESYLKGLNYPAQTG
                     VLNIIFLEEKRDLLEKQPILSRLMEELKNVILIDDESFSMLNQNHQDYIAECVQDEQF
                     HTTRLISYGPKGNFASLFYKHRLPKTQVYSSLDFWSESRYLEELTKIGMLEEEIVTIL
                     AEKEESFFYAGLANSGLKLVAHLLDPLEALLEFENEKGRS"
     gene            5493..7871
                     /gene="secA2"
                     /locus_tag="U1087_001284"
     CDS             5493..7871
                     /gene="secA2"
                     /locus_tag="U1087_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003087918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system translocase SecA2"
                     /protein_id="HEM4755761.1"
                     /translation="MGLGQYFKLDYYRVRRLKKIYQRIDSLKDEMGQLTDEELAGKTK
                     EFKERLAQGETLDDLLEEAYAVVREAAKRVLGMFPYEVQVLGAIVLHEGNVAEMKTGE
                     GKTLTATMPLYLNALEGKGVMLITTSSYLAQRDADEMGAVYRFLNLSVGVGVVGKEDR
                     NKSSQAKREIYGSDIVYTTNSALGFDYLFENLATDLKQKFLRPFHYAIIDEVDAVLLD
                     TAQVPLIVSGSPRVQSNLYTIANHFILSLTEGESYYYDRELKEVWLTQKGMDEAERYF
                     SSPNFYIADNQELVRHVVLALQAHKCFTLGKNYVVQDNKVQLLDKTDGRVMSWTRLQG
                     GVHQAIEQKEGVKITPEMRSIASVTYQNLFLMFNKLSGMTGTGKTAESEFIETYNMEI
                     VQIPTNKPVIRKDYPDKIYTTMPEKIQASLDLVKKVHATGQPILLVTGSVNMSELYSE
                     LLLLEGIPHSLLNAYNAAKEAQMVAEAGQFGTITVATNMAGRGTDIKLGPGVKELGGL
                     AVIGTERMKSQRMDLQIRGRSGRQGDPGFSQFFACLEDDLVIENGGKWIQTYFENNKD
                     KIDPTKPEELTGRRFKKALRHAQEASDGSGRSSRSMTLQFDESVKLQREYVYRERNAI
                     IEGTNEALDILQFAKEDVARYLKQHPVLDAHDLERYILDHITYDFHSFPEHLELQNHS
                     QVQDFLLSIIEQEIQRKKEVLTKDYLQFERLAVLKAIDECWVEEVDYLQQLRVIAGAR
                     QAAQRNPVFEYHQEAYKGYQKMKEEIRRNILQNILLSDVSYTEKGDMQVYFA"
     gene            7887..9404
                     /gene="gtfA"
                     /locus_tag="U1087_001285"
     CDS             7887..9404
                     /gene="gtfA"
                     /locus_tag="U1087_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system glycosyltransferase GtfA"
                     /protein_id="HEM4755762.1"
                     /translation="MIVYNINLGIGWASSGVEYAQAYRAQLLRRKGIKTKFIFTDFFG
                     QDNISDMTRNIGFKDEEVIWLYTFFTDQKVAPTTYTLDQLRQDVTGTITREERDGKIV
                     RFFYEEQNFFLTAYLCQEDKDIVHHVEYVSSGNLIRKDFFTYMRSFSEYYTPRDSRGH
                     LYLRRFFNEDGSVAYEEVIDGNKSVYRMPDAVISSKEEWIAYFMKKLHLTSKDIIILD
                     RATGTGQAVFANKDPARLGVVIHAEHYSLNQVTDQTILWNNYYDYQFVHADCVDFFIT
                     STKRQKEVLEEQFEKYVGKVPRIVDIPVGSIDDVRRAEKRRPYSIITASRLATEKHVD
                     WLTKAVVAAKKDLPELTFDIYGSGGEHAKIEAIIKEHQAEDYIHLKGHHDLTEVYQDY
                     ELYLTASKSEGFGLTLLEAIGAGLPLIGFDAPYGNQTFIQEGRNGYLLPFPTVEDEQE
                     IVSQYRQAIRSFFSREDRHEMQEASYQVASAFLTHEIEKKWVELVEEMVGDDSFI"
     gene            9388..10713
                     /gene="gtfB"
                     /locus_tag="U1087_001286"
     CDS             9388..10713
                     /gene="gtfB"
                     /locus_tag="U1087_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017646253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system glycosylation chaperone
                     GtfB"
                     /protein_id="HEM4755763.1"
                     /translation="MIHLFDTYQQSSWDLHYSLICSGYNNPTIVLNDDGFLPHDVTSP
                     FRYFTEYDTVQGQALYFNQVKTPTFWEIRGDGSQAAIYDYATKRAQIHYAQPSHKRLV
                     KAVDWYDETGKIIVTDCYNDKGMRFAQTSYDRQGQAMQTSYYKADGQEVLVENHGTGD
                     WILNYQSRIYFFKNRHDWLRFYFKTAGFKLDRIFYNSLGQSFLTAFYLDEDGEDILFW
                     QEPIHDSIPGNMLLLLNKQSRRPTKVVVQDKEAYDNLMALASPEQQKNIAYLGFLYPF
                     KEQTEFKPEALILTNSDQIEQLERLVTSLPQLHFHIGAITEMSSHLMTFGNYENVTLY
                     PNIAMDLVHQLYQRTSLYLDINHGNEILSSVRTAFEYRQLILGFTETLHASTYVAREN
                     RYASSQVDAMITKIQTLLAKPNHERDALLKRQEEEANLTTVADYQRVIN"
     gene            10722..10901
                     /locus_tag="U1087_001287"
     CDS             10722..10901
                     /locus_tag="U1087_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755764.1"
                     /translation="MKHEHPLKESIEQRLEEERYVIPKKNKEKKRFNFQLIVTISILI
                     SLGLIILQILQFFLK"
BASE COUNT         3354 a         1959 c         2432 g         3182 t
ORIGIN      
        1 cgtggagtct tgacttgcaa aaaagccatt tttagcatat actgtatgat atactcccct
       61 tatagtggac agtgaaaaaa caaaaatttc cagcagataa gtttggctat ttttatttta
      121 cgatgacgaa gcaggagaaa aaagtaagaa tgaataaaat acaacctggg attcggaagc
      181 tagctgtaac agcaggaatc attatgttat ttctactggg gcgcagccta cctctacctt
      241 ttctacagtt ggatgcttat atcaacccag aagaagtcaa tagttttaat ttagctcaga
      301 ttagtttgtt ttctcttgga ttaggcccat ggatgaatgc gactatttta ctttctttat
      361 ttacacgcag aaaaagcgct tcggagtcac cacggatggc tgaatatcgg aaaaacgcgt
      421 tgatgttact cattgctgtt attcaaggtt taggaattgc tgtttcattc agttatacag
      481 ttagtggtag tcagctttat caatcaatag ctggtgtgac tctagtttca gtggcagggg
      541 cttttgttat ttcttggtta attagcttga atagtaattt cggtgtaggt ggttcagcca
      601 tgctcgtgtt ggtgaatatt ctcgttggac aactggtaac cattccgaag gttatggagt
      661 tgagtggtac ctatctaacg ccttatttat ggtttggtct attgtggatt ttagtaacca
      721 tttacttaat cgttgtattt gaaaaagcag agtaccgaat tcctgtacaa cggattacaa
      781 ttaacaatac cttggccgat gaagcataca tgcccgttaa gatcttctta tctggtggga
      841 tgtcatttat gtattcgtat accttattta gctttcccca gtatgtctta gtcttgcttg
      901 cttatttttt ccctcagtat gggacaatta tcaaggcgct cggacgttac ttctcaatgt
      961 tggattggga aggtatggta gtttttctcc taattttgta tgttttgaca gtgagctttg
     1021 cctatattaa cctcaatcca accgataagg ctgaggagtt gagaaagtct ggtgactata
     1081 taccgggagt gagaccgggg aaacctacta agcaatatct atcaaaaata gcttctcgtc
     1141 tagggaattt taatgcgttt tatctggtcg ttatgtctgg tattccaatg ggaatctcca
     1201 tgatttatcc agaattacgc cctattgcca acctgcctgg tgtagtgatg atgaccgcaa
     1261 gcatcttttt aacaattatc attgaatttc gtgttatgcg tctgaagaaa cgctatacat
     1321 ctttatttaa ataaatgaaa gaaagggatg atgatgtttt attttatccc ctcatggtat
     1381 cctgaaaaac gtacttggta cgacaacaca gagttgtggt atcgtcgcaa tatgtcctct
     1441 tattttgacg atacgattaa tcagctgcgt atgtttgtca atgtaggtga acctagtcaa
     1501 ctaatagtat taaattatat gcccaatctg cgctattata cgcatcggta tgggctgttt
     1561 gaagttccat attggtccgt attcgaccac atacaaggaa ttacaggtga tgattttcaa
     1621 ccgttggact atttggatat ggaatggcct gatggaattg agtttatcaa tagtcctttt
     1681 ctagtcattg cgcggttaaa agggcaatta tttgcccagt tggagtttgg cgaggaagga
     1741 aatcttgttt ggatcgattt ttttgaccaa gatgttcaaa gtaaaaaaat ggtttttgat
     1801 gacagaggct ttctatcaag tattctttat tatcaagatg gccaacctta ttaccaagat
     1861 tatctcggaa aagatggagt ctatcgcatt cgagagtacc ttttaccgga taatcagcaa
     1921 gtactgatta acccgacaag gcagtatcat tttttaaaaa atacatatga ctcgatagaa
     1981 gaactgctca gtgaacaact agaacgattc ctatctgctc aacctaaatc tacaatcgtg
     2041 ttagcagcgg atggaagaca tcatgagact gttgcaaaag caataagcag acatacattg
     2101 gttttgtctt attttggaaa tcgatttcaa gtggattcta ccagtcaact acaagtagag
     2161 cgtctactct cccctcatct gattgtgacg gatagtttga agatgcaaca gcaacttgaa
     2221 aatatgacga gtcaccctgt tcatcaggtt tcattgtatg atacacgact tgcgcttgga
     2281 aaaagtcaac gcttgaaaga attgtatatc tatttcttgt tagatggagt gcataagacc
     2341 cagtggaaag tagcgttaca agaaattttt gtagcgatga aatcaaatga atatatccat
     2401 ttaatgttgg ttacctacca gtcggaaaag gattaccttg atcgattaaa agaggaaatc
     2461 gagttagagt tggaacagat gccagaagaa tacttaaaac tgaaagagaa cacaaaacac
     2521 caattgtttg aggtaggaga tgaggaagaa gaggtggagc gcgttgcatt tactcctctt
     2581 cattccgagg tggacatcat ggtagcctta gattcggttc gtctcattat tgatctggca
     2641 gatgaaccga atctatacac acaaatcgct ggcatcagtg ctgggattcc acaagtcaat
     2701 gctagacaga cagaatatgt cgaacactta aaaaatggct atatcttgac tgatggtgga
     2761 aatttagggg cggcgctaaa ttattattta gacggattaa gtcattggaa tgagtccttg
     2821 atttattctg ttagaaaaat atcagattat acaagtggtg tcctagtaga aaaaattaaa
     2881 gaaaaagtag aatgacaatg tcaaaaaaaa aaatacatgt actacaagtg ggaacagaag
     2941 actggtccca agcgtttgct attccagagt ctttagagtg gcactatctc ccttcggata
     3001 aactatcaga tttcctaaag gagcaagaaa ctattgaagc aaaacgaagg gaagcgacag
     3061 cactctatga agagttcgcg ctacaaccag aagcaaatga gttctacctt caggagttgg
     3121 aaaaaatgct gaaagtggag cttcggacag ttgcctatag tattttactg ctttcagaca
     3181 agaattatcc tgcagaactt actaagttgg atttgttgat tgatgctcac aggttatttt
     3241 atccaagtaa ttgggaagca gaagatagga cgacagcaaa ttttctatat aaaaaagtag
     3301 cccaacgcta tgattggaat aaaaaagaag agctcatcta caccttttct aaagcattat
     3361 ttagtggaca atttggtcaa aagattacct tagcagaact ggaaatttct actaattttg
     3421 gtggaaggat agattatgag ggtcaaaatt atgtttgttt agagggagat tttggtcaag
     3481 atttccagca aattgcctat tatcgttata acattcaagc ttataaagat gttttcctta
     3541 atttatttct gaatcatgta gttgagccaa gctgtgcgat taaattaaat gtgcaactca
     3601 tccaagatgg ttcaacggcg actattgtaa aagaatggtc ttttgagggg aaagaattaa
     3661 gagaacaact ctttttggat cccaacgaaa acggctattt atttatatcc atccatgcca
     3721 aagggaatgg actgataaaa atcggttctt gccatcaacg ttggagtcga aatggactgg
     3781 gagagtttgt cttgggagga gaacgcctgg tggatgatga tttgcaagaa atctatactt
     3841 tctttcatcc gatggatttt actcctcctc tttgtgtcta tttttcaggt tttcgggaag
     3901 cagaaggttt cgagggctac cgcatgattc gtggcttgaa caaaccgttt atgttaatct
     3961 gtgatccacg tctgattggt ggtgcctttt atctaggcag tgaggattta gaacaacaga
     4021 ttgttcaaaa aatacaggaa aaattagatt acctaggatt taatagtagt caactaattc
     4081 tgtcaggaat atcgatggga acatttggag cgacttatta tggtgctgac cttcatccct
     4141 acggcatcgt cttggcaaag ccagttctaa gtttgggtga ggttgctctg atggagaaag
     4201 ttcatcgccc aggtggtttc gcaacctcta ttgaactatt aaaatcctta tacggagatt
     4261 tgagcatggc atcagctgaa agattaaaca atcgctactg ggataagatg actgaaggag
     4321 tgtttaagaa tactcaattt gcaattacct atatgaaaaa cgaagattat gatgcttcag
     4381 catttgaaaa aatgatccac tatagcaagt ctacgggggc tactattcat gctagaggca
     4441 tagctggaag gcataatgat gcctttggtt caatatatgg ttggtttgtg aatcgctata
     4501 aagcaatgat aaaaaatgga tttgatacaa aggaagaggc gcatgaaagt tagtatccgt
     4561 tggaagtact ttatacgttc ggcttatagt tatggaagta cacttcggtt tgaagatgga
     4621 aaagtctatt ttgaaaatcc gttaatgcca cccagcttcg agttgaatcg ttgggaatcc
     4681 ttgactaatt ttcaaagtcg tagggtacag ccacaactac ctctgttaaa aaaaggagtg
     4741 acctatcggc tagacttgaa ggcttctgtc tatccgacag catctgtcta tgtgcaggta
     4801 gaatttttca atcgctatcg agaaaaaatt gattttgtca ttctaaaaga ctcttctagt
     4861 gaatttactt atccgaaaga agcctattcc tatgagattg ctttaatcaa tgcaggctgt
     4921 agcgaaatgg aatttacaga gttgattttg gaagaaaaat gcacaatttc agacacgctt
     4981 gaaagttatc tgaaaggttt aaattaccct gctcaaactg gtgtattgaa cattattttt
     5041 ctcgaagaaa aacgggactt gcttgaaaaa caaccgattt tgagtcgatt gatggaagag
     5101 ttgaagaatg ttattttaat tgatgacgag tccttctcta tgctgaatca gaatcatcaa
     5161 gattatatag cagaatgcgt ccaagatgaa cagtttcata ccacccgact catatcctat
     5221 ggacctaagg gaaactttgc tagcttattt tataagcatc gcctccctaa gacacaagtc
     5281 tactccagtt tggatttttg gtctgaatca cgctatttgg aagaactgac caagattggt
     5341 atgcttgaag aagagattgt gaccatttta gcagagaaag aagagtcttt cttttatgca
     5401 ggactggcaa attcaggttt aaaattagtg gctcatttac ttgacccctt agaggcattg
     5461 ttagagtttg aaaatgagaa aggacggtcg taatggggct gggacagtac tttaagctgg
     5521 attattatag ggttcggcgc ttaaagaaaa tctatcagcg aattgatagt ctaaaagatg
     5581 agatgggtca attaaccgac gaggaattgg ctgggaaaac taaggaattt aaggaaagat
     5641 tagctcaagg tgagacgctc gatgatttat tagaagaggc ttacgctgtc gttcgtgaag
     5701 cagccaagcg cgtgctagga atgtttccgt atgaagttca agttttaggc gctattgttc
     5761 ttcatgaagg taatgttgct gagatgaaga ctggagaagg aaagacgttg acggctacca
     5821 tgcccttgta cttaaatgct ttggaaggta agggagtcat gttgattacc acgagctctt
     5881 atcttgcaca gcgggatgcc gatgaaatgg gggctgttta ccgttttctg aatctaagtg
     5941 tcggagttgg tgtcgtcgga aaagaagatc gaaataaatc ctcccaagct aagcgtgaga
     6001 tttatggctc tgacattgta tataccacca actcagcttt ggggtttgac tatttgtttg
     6061 aaaatcttgc gacagatttg aaacaaaagt ttttacgtcc ttttcattat gccattattg
     6121 atgaggtaga tgcggttctt ctagacacag ctcaagtacc actgattgtt tcgggatcac
     6181 ctcgggttca atcgaattta tatacaattg ctaatcactt tattctcagt ctgaccgaag
     6241 gagagagcta ctattatgac cgagagctaa aagaagtctg gttgacacag aaagggatgg
     6301 atgaggcaga acgctatttc agttccccaa atttctatat tgcagacaat caggagttag
     6361 ttcgccacgt tgttttagcc ttacaagccc ataaatgttt cacattaggg aaaaactatg
     6421 tcgttcaaga caacaaggtt caattgttgg ataagacaga cggtcgtgtt atgtcatgga
     6481 cccgcctcca aggtggtgtt catcaggcga tagaacaaaa agagggcgtt aagataacgc
     6541 cagaaatgcg ttcgattgct tcggttacct atcaaaatct attcttaatg ttcaataaac
     6601 tttctggtat gacagggact ggtaaaacag ctgagtcaga atttatagag acctataata
     6661 tggaaattgt tcagattcca actaataaac cagtcattcg taaagattat cctgataaga
     6721 tttacacgac catgccggaa aaaattcaag cttctttgga cctggtaaaa aaagtccatg
     6781 caactggtca gccgattctt ctagtgactg gttcggtcaa tatgtccgaa ctctattcag
     6841 aactcctgtt gctagaaggg attcctcaca gccttctcaa tgcctataat gctgccaaag
     6901 aagcgcagat ggttgcagaa gctggacaat ttggaacgat taccgtagcg acgaatatgg
     6961 ccggacgagg aacggacatc aaactcggtc caggcgtaaa agaattgggt ggtttggccg
     7021 ttatcggaac ggagcgaatg aagagccagc ggatggactt gcagatacga ggacgttcag
     7081 gacgacaggg agatccagga tttagccaat ttttcgcctg cttggaagac gatctggtaa
     7141 ttgagaatgg cggcaagtgg attcagactt attttgaaaa caataaagat aagattgacc
     7201 caacgaagcc tgaggaattg accggtagac gatttaaaaa agccttgcga catgcacaag
     7261 aagcgagtga tggttcggga cgctcttcac gaagcatgac cttgcagttt gacgaaagtg
     7321 tcaaattaca acgagaatac gtctatagag aaagaaatgc cattatcgag ggaacaaacg
     7381 aagcgctcga tatcctgcaa ttcgccaagg aagatgttgc tcgttatctc aaacaacatc
     7441 ctgttttgga tgcccatgat ttggagcgct atatcttgga ccacatcacc tatgattttc
     7501 atagttttcc agaacattta gaattacaaa atcatagcca agttcaagat ttcttgctgt
     7561 ctattatcga acaagaaatt caacgaaaaa aagaagttct gacaaaagat tatttacaat
     7621 ttgaacgctt ggctgttttg aaagcgattg atgaatgctg ggtcgaagaa gtggactatc
     7681 tacaacaact ccgcgtcatt gcaggagcga gacaagcagc gcaacgcaac ccagtatttg
     7741 aataccacca agaagcctat aaaggctatc aaaagatgaa agaagaaata aggcgaaata
     7801 tcttacagaa tatcctgtta agcgatgtct cttatacaga gaaaggagat atgcaagtat
     7861 attttgcgta ggaagaagag gaagttatga tcgtctacaa tatcaatctt gggataggtt
     7921 gggccagtag tggtgttgag tacgctcaag cctatcgtgc tcaattatta cgccgaaaag
     7981 gaatcaaaac caagtttatc tttacagatt ttttcggaca agataatata tcagacatga
     8041 cacggaatat cgggttcaag gatgaggaag tcatctggct ctataccttc tttacagacc
     8101 aaaaggtagc accaactact tacacccttg accaattgag acaagatgtt acaggaacga
     8161 taacgcgaga agaacgtgat gggaagattg ttcgtttctt ctatgaagag cagaatttct
     8221 ttttgacagc ctatctttgt caggaagaca aagatatcgt tcatcatgta gaatacgttt
     8281 cgagcgggaa cctgattcgc aaggatttct ttacctacat gagaagtttt agtgagtact
     8341 ataccccacg cgatagcagg ggccacctat acctcagacg cttcttcaat gaagacggat
     8401 ctgttgcata tgaggaagtg attgatggaa ataagagtgt ttaccgtatg ccagatgccg
     8461 tcatatcttc caaggaagag tggattgctt actttatgaa aaaattacat ctgacgagta
     8521 aagatatcat tatcttggac cgagctacag gaactggaca agcagtcttt gctaataaag
     8581 atcctgctcg tttaggtgtc gtcattcacg ctgaacacta cagtctcaat caagttaccg
     8641 accagacgat tctctggaat aactattatg actaccaatt cgttcatgct gattgtgttg
     8701 acttctttat cacctcgacc aaacgacaaa aagaggtctt agaagagcag tttgaaaaat
     8761 atgttggcaa ggttcctcgt atcgtggaca taccagttgg aagtattgat gatgtcagac
     8821 gtgcagaaaa gagaagacct tactccatta tcaccgcttc acgtctagca acagaaaaac
     8881 atgtggactg gctgaccaag gctgtggttg ctgccaaaaa agatctgcca gaactcactt
     8941 ttgatatcta tggtagcggg ggtgagcatg ctaaaattga ggctattatc aaggaacatc
     9001 aggcagaaga ctatattcac ctgaaagggc atcatgattt gaccgaggtt tatcaagatt
     9061 acgaactcta cctgaccgct tcaaaaagtg agggctttgg attgaccttg ttggaagcta
     9121 tcggtgcagg cttacctctt atcggttttg atgcgcctta tggaaaccag acgttcattc
     9181 aagaaggacg aaacggttat cttttgccat tcccaactgt agaggatgag caggagattg
     9241 tctcacaata tcgtcaagct attcgtagct tctttagtcg tgaagatcgt catgaaatgc
     9301 aggaagcttc ttaccaagta gcatccgcat tcttaaccca tgaaatcgag aaaaaatggg
     9361 tagaattagt agaggagatg gtaggagatg attcatttat ttgatacgta ccaacaatcg
     9421 agttgggatt tgcattattc cctcatttgt tcaggatata acaatccgac aattgtgtta
     9481 aatgatgatg gcttcttgcc acatgatgtg acatcgcctt ttcgatactt tacggaatat
     9541 gatactgtgc aaggacaagc cttgtatttc aatcaggtaa aaacaccaac tttctgggaa
     9601 attcgtggag acggtagtca ggcggcaatc tatgattatg cgaccaagcg tgcgcagatt
     9661 cattacgctc aaccaagcca taagcgactg gtcaaagcgg tggattggta tgatgagaca
     9721 gggaaaatca tcgtgaccga ttgctacaat gacaagggaa tgcgatttgc acaaaccagc
     9781 tatgatagac aaggacaggc catgcagacc agctactata aggcggatgg tcaggaagtc
     9841 ttagttgaaa atcatggcac gggtgactgg attttgaact atcagagccg tatttacttt
     9901 ttcaagaata gacatgattg gttgagattc tacttcaaga cagcagggtt taagctggat
     9961 cggatttttt acaacagttt gggacaatct ttcttgactg ctttctatct agatgaagat
    10021 ggtgaagaca ttctcttttg gcaagaaccg attcacgata gtattccggg taacatgctt
    10081 ctgttgctca ataagcagag cagaagaccg accaaggttg tggtacaaga taaggaagct
    10141 tatgacaatc tgatggcact ggcaagccca gaacagcaga aaaatattgc ttatcttggc
    10201 ttcttgtatc cgtttaagga gcaaactgag tttaaaccag aagctcttat cttgactaat
    10261 tctgatcaaa tcgaacagtt ggaacgtctg gtcacaagtt taccgcagct gcattttcat
    10321 attggagcga ttacagagat gtccagtcac ttgatgacct ttggcaacta tgaaaatgtg
    10381 accctctatc caaatattgc catggatttg gtacatcaat tgtatcagcg gaccagcctt
    10441 tacttggata tcaatcatgg taacgaaatc ctatcctctg tccgtacagc attcgaatac
    10501 cgtcagctga ttttaggttt cacagaaacc cttcatgcgt caacttatgt tgcgcgtgaa
    10561 aatcgctacg cttcctcgca agttgatgct atgattacta agattcaaac tcttctagct
    10621 aaacctaacc atgagcgaga tgctttgttg aagcgtcagg aggaggaggc aaacttgacc
    10681 acagttgccg actatcagcg cgtgataaac taggagggac tatgaaacac gagcatccat
    10741 tgaaagaaag catcgagcag cgactcgaag aagaacgcta tgttattccg aaaaaaaata
    10801 aggaaaagaa aaggtttaat tttcagctaa ttgtcacaat ctcgattctt attagtctcg
    10861 gcttgattat cttgcaaatt cttcagttct ttttgaagta aactttttgg gagtgggaaa
    10921 gaactcg
//
LOCUS       DASFRC010000074        10927 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.074, whole genome shotgun sequence.
ACCESSION   DASFRC010000074 DASFRC010000000
VERSION     DASFRC010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10927)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10927)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10927
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.074"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            639..2630
                     /locus_tag="U1087_001288"
     CDS             639..2630
                     /locus_tag="U1087_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M13 family metallopeptidase"
                     /protein_id="HEM4755765.1"
                     /translation="MRKKLKFSLVAVACATFLTACGTSNSSAPKAGEATPQTDFHSYI
                     NAQWLKNTKLGAGESQIDNLSQLSEKTQEAIQEMIDQLDMDYSKLQAGSDEKKLIDFY
                     RLAADFDTRNKLGLEPIKPYLEEIKKASTMEELNKILVALYGKNIRNLLHINVTQDIK
                     DSNKNTIYVDPHELSFPKENYDGTDEFSLKNQKAFKAYLQEVFSLSGETSKEASSKAD
                     LLFNLEKEMAAVQRPKEEANNFEAMYNEKTWDEVKALVPNLPIAELVSELGLQSAPTT
                     VVSDPDALKKLNELYQEKNLDALKALLQYRVIAHYNAYLSSNLIEAKAKYDGVATGAV
                     DTPSQKEVAQAAIDANFSDMIGKVYVKHHFSEESKANILSMVQEIKATYAERIKAVQW
                     MSEETKMRALKKLDTLVVKIGYPDQWKDYSQLAIQSKEEGGSLLSNFDMVKTLELREE
                     MGQFGKPFDKSQFGMPSHTVNAYYSPTNNEIVFPAGILQAPLYDPKASPEENLGGIGA
                     VIGHEISHAFDKAGSQFDEKGNLVNWWKPEDLEKFNKKVQQAADIYSKLEVAPGYYVN
                     GEISTGEIMADLGGLTVAIDIAQKKGYDTKKVFESYGKAWREVTTKEFAIANISDEHP
                     PAKYRVNNIVNQIDQFYTDFNVKEGDPMYVKPEDRLRVW"
     gene            2997..4007
                     /gene="gap"
                     /locus_tag="U1087_001289"
     CDS             2997..4007
                     /gene="gap"
                     /locus_tag="U1087_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008090210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HEM4755766.1"
                     /translation="MVVKVGINGFGRIGRLAFRRIQNVEGVEVTRINDLTDPVMLAHL
                     LKYDTTQGRFDGTVEVKDGGFEVNGKFVKVSAEREPGNIDWATDGVDIVLEATGFFAS
                     KEKAEQHIHANGAKKVVITAPGGNDVKTVVFNTNHDILDGTETVISGASCTTNCLAPM
                     AKALHDAFGVQKGLMTTIHAYTGDQMVLDGPHRGGDLRRARAAAANIVPNSTGAAKAI
                     GLVIPELNGKLDGAAQRVPVPTGSVTELVATLDKKVTAEEVNAAMKAAATESFGYTED
                     QLVSSDIVGISFGSLFDATQTKVIEVDGEQLVKVVSWYDNEMSYTAQLVRTLEYFAKI
                     AK"
     gene            4157..5356
                     /locus_tag="U1087_001290"
     CDS             4157..5356
                     /locus_tag="U1087_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HEM4755767.1"
                     /translation="MAKLTVKDVELKGKKVLVRVDFNVPLKDGVITNDNRITAALPTI
                     KYILEQGGRAILFSHLGRVKEEADKEGKSLAPVAADLAAKLGQDVAFIAGATRGAELE
                     AAINALEDGQVLLVENTRFEDVDGKKESKNDEELGKYWASLGDGIFVNDAFGTAHRSH
                     ASNVGISANVEKAVAGFLLENEIAYIQEAVETPERPFVAILGGSKVSDKIGVIENLLE
                     KADKVLIGGGMTYTFYKAQGIEIGNSLVEEDKLDVAKALLEKANGKLILPVDSKEANA
                     FAGYTEVRDTEGEAVSEGFLGLDIGPKSIAKFDEALTGAKTVVWNGPMGVFENPDFQA
                     GTIGVMDAIVKQPGVKSIIGGGDSAAAAINLGRADKFSWISTGGGASMELLEGKVLPG
                     LAALTEK"
     gene            6146..6661
                     /locus_tag="U1087_001291"
     CDS             6146..6661
                     /locus_tag="U1087_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic acid exporter family protein"
                     /protein_id="HEM4755768.1"
                     /translation="MFKKYTFDPKKFRLGMRTFKSGLAVFLVILLFGYMGWEGIQIAA
                     LTAVFSLREDFDQSVHFGASRILGNSIGGFYALLFFILDRLFLDHFWVTAVFVPIFVM
                     LTIMTNVAMNNKAGIIGGVSALLIITLSIPAGDTIQYVFIRVFETFIGVFIAILVNYD
                     VNVIKKRFQDK"
     gene            6737..7108
                     /locus_tag="U1087_001292"
     CDS             6737..7108
                     /locus_tag="U1087_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM4755769.1"
                     /translation="MREKEFRRSLAIFPIGSVMKLTDLTARQIRYYEDQGLIKPDRNE
                     GNRRLYSLNDMDLLLEIKDFLDEGLNIAAIKKEYANREAKAKVQKQQKTLTDEDVRRI
                     LHDEFSRQGRFSSPSSIFRSS"
     gene            7137..8483
                     /gene="glnA"
                     /locus_tag="U1087_001293"
     CDS             7137..8483
                     /gene="glnA"
                     /locus_tag="U1087_001293"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008808235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HEM4755770.1"
                     /translation="MTFTVADIKHDIKEKNVTFLRLMFTDIMGVMKNVEIPATDEQVE
                     KVLSNKVMFDGSSIEGFVRINESDMYLYPDLDTWTIFPWGDENGRVAGLICDIYTTDA
                     KPFAGDPRGNLKKSLRHMEEAGFSSFNLGPEPEFFLFKMDEQGNPTLEVNDKGGYFDL
                     APTDLADNTRREIVNVLTEMGFEVEASHHEVAVGQHEIDFKYADVLKACDNIQIFKLV
                     VKTIARKHGMYATFMAKPKFGIAGSGMHCNMSLFDKDGNNAFFDPEDPRGMQLSQTAY
                     HFLGGLIKHAYNYTAITNPTVNSYKRLVPGFEAPVYIAWAGKNRSPLVRVPASRGMGT
                     RLELRSVDPTANPYLAMAVLLEVGLEGIQNKIEAPAPVESNIYAMSDEERREAGITDL
                     PSTLHNALKALREDEVVRAALGDHIYTNFLEAKKIEWASYATYVSQWEIDNYLDMY"
     gene            complement(8806..10485)
                     /locus_tag="U1087_001294"
     CDS             complement(8806..10485)
                     /locus_tag="U1087_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEM4755771.1"
                     /translation="MSSVNLKPHEVGVFAIGGLGEIGKNTYGIEYKDEILIVDAGIKF
                     PEDDLLGIDYVIPDYSYIVENLDRVKGLVITHGHEDHIGGIPFLLKQANVPIYAGPLA
                     LALIRGKLEEHGLLRDATLHEINHNTELTFKHLKVSFFRTTHSIPEPLGIVVDTPQGK
                     IVCTGDFKFDFTPVGEPADLHRMAALGEEGVLCLLSDSTNAEVPTFTNSEKVVGQSIM
                     KLIEGIHGRIIFASFASNIFRLQQAADAAVKTGRKIAVFGRSMEKAIVNGIELGYIKV
                     PKDTFIEPNEIKEYPASEIMILCTGSQGEPMAALSRIAHGTHRQVQLQPGDTVIFSSS
                     PIPGNTTGVNKLINILIEAGVDVIHGKINNIHTSGHGGQQEQKLMLRLIKPKYFMPVH
                     GEYRMQKIHASLAVDTGVPKDNIFIMENGDVLALTKDSARLAGQFNAQDIYVDGNRIG
                     EIGAAVLKDRRDLSEDGVVLAVATVDFNSKMILAGPDILSRGFIYMRESGELIRESQR
                     VLFNAIRIAMRNKDANIQTVNGAIVNALRPFLYEKTEREPIIIPMILTPDR"
     gene            complement(10489..10719)
                     /locus_tag="U1087_001295"
     CDS             complement(10489..10719)
                     /locus_tag="U1087_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000639444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-dependent RNA polymerase auxiliary subunit
                     epsilon family protein"
                     /protein_id="HEM4755772.1"
                     /translation="MIYKVFYQESKISPRREQTRALYLDIDAASELEGRIIARELVET
                     NRPEYNIEFIDLLSDNHLEYEKEHADFKITEF"
BASE COUNT         3222 a         2050 c         2532 g         3123 t
ORIGIN      
        1 ttgcagctat tgagacgaac ttgcttcgcc ctatctccag ccttcaaagg tttcccgaac
       61 ctttgaagcg agtactaaaa acaaactaaa cgactacact atataaaaca gatatccgcc
      121 agattcattt tggaaatata caatgagaaa gctacaattt ataaaaaatt accctaattt
      181 aggtgtggat ggctaacaaa agatcagggt ttgctatttt gggatttcat tgggtataag
      241 ttcctgttgt cgatgaactc aacagtgact cccaggtccg actactgtga aataaacgga
      301 ttaaaacagt ctggggttag actatttcag ctcaacaact agaaattagg aattgttgcc
      361 gaactctttt gatcgttcga gttctcgcct actcacactt aatcagctaa aataaatgtt
      421 ttaaattatt tagaattact ttgtttggga atggttataa aaaataagag aattaataga
      481 taggctacag aagaaaagca gatataaatg ttagaatcct tataaggtag atcgatgaaa
      541 gagtagttta ggaccgctaa ttactaaagg aggatgcttg tatggtgatg aaatagtggt
      601 actaagcaca ttaacaataa aaagaaagga cagaaaccat gagaaaaaaa ctaaaatttt
      661 cattagtagc agtcgcctgt gcgacatttt tgacagcctg tggcacaagt aattcctcgg
      721 ctcccaaagc aggtgaagca acaccacaga cggattttca ttcttatatc aatgcgcaat
      781 ggttgaaaaa tacaaaatta ggtgccggtg aatcgcaaat agataatctg agtcaactct
      841 ctgagaaaac gcaagaagcg atacaggaga tgattgacca gctggatatg gactattcca
      901 agctgcaagc tggtagtgat gagaaaaaac ttattgattt ttaccgattg gcagccgatt
      961 ttgatactcg caacaaattg gggttagagc ctattaagcc ttatctagag gagattaaaa
     1021 aagcctctac catggaagaa ctcaacaaga ttctggtggc cctatacggc aaaaacatcc
     1081 gcaatttgct tcatataaac gttactcaag atataaaaga cagtaacaaa aacaccatct
     1141 acgttgaccc tcacgagtta agttttccaa aagaaaatta tgatggcaca gatgaatttt
     1201 cattgaaaaa tcaaaaagcc tttaaagcct atctgcagga agtgtttagc ttgtcaggag
     1261 aaacctcaaa agaagcctct tctaaggcag atctcctctt taatttggaa aaagagatgg
     1321 ctgcagtgca acggccaaaa gaagaagcca ataactttga agccatgtat aacgagaaga
     1381 cttgggatga ggtcaaagca ctggttccca acctaccgat tgctgagttg gtttctgagt
     1441 taggacttca gagtgcccca acgacagtcg tatcagatcc agatgctcta aaaaaattaa
     1501 atgaactcta tcaagaaaag aatttagacg ctcttaaggc tctgctccaa tatcgtgtga
     1561 ttgcccatta caatgcttat ctgtcaagca atttaatcga ggcaaaagcg aaatatgacg
     1621 gcgtagcaac cggtgcggta gatactccga gtcagaaaga agttgctcaa gcggccattg
     1681 atgcaaattt ctccgatatg attggcaaag tttacgttaa acaccatttt tcagaagaat
     1741 ccaaggctaa tatcctatct atggttcagg agattaaagc gacttatgca gagcgaatca
     1801 aagcagtgca gtggatgtct gaagaaacta agatgcgggc cttgaaaaaa ctagatacat
     1861 tggttgttaa aatcggctat ccagaccagt ggaaggatta ctcacaactt gctatccaat
     1921 ccaaggaaga aggggggagt cttctttcta acttcgatat ggtaaaaaca cttgaattgc
     1981 gtgaagagat ggggcaattt ggcaagcctt ttgataagtc gcagttcggc atgccttctc
     2041 acacggtgaa tgcctattac agcccaacta acaacgaaat tgtctttcca gcggggattt
     2101 tacaggctcc tctctacgat ccaaaagcta gtcccgaaga aaatctaggt ggaatcgggg
     2161 ctgttatcgg tcatgaaatt tcccatgcct ttgataaggc tggttctcaa tttgatgaaa
     2221 aggggaacct tgtcaactgg tggaaaccag aagaccttga aaaatttaat aaaaaggttc
     2281 aacaggcagc agatatctac tctaaattgg aagtggctcc gggctactat gtcaatggcg
     2341 aaatttcaac cggtgaaatc atggcggatc tcggtggttt aacggttgcc attgatattg
     2401 ctcagaaaaa aggctacgat acgaagaaag tcttcgagtc ttatggcaaa gcatggcgtg
     2461 aagtcaccac caaagaattt gctattgcca acatcagcga cgaacatcca ccagctaaat
     2521 atcgggttaa caacattgtc aaccaaattg atcaattcta tacagacttc aatgtcaaag
     2581 aaggggatcc aatgtatgtg aaaccagaag accgcctacg agtgtggtaa aagattatag
     2641 aggtgtctgc ggtccaaaat gggcggtaga caccttttta ggtaaaaaat agaagtagcg
     2701 gtaaaccaag aatcggtaaa aaatgtgtcg aggtatggca atgctattaa gttaagtatt
     2761 taaccagtca taaccacccg agaaaacgca tggctatgat ttttaacttt tattttttgg
     2821 ccttctattt tttacataag atgaaccggt aagcagttgc aattttcggt aaatagttat
     2881 ataataaaaa cgttgaaaag atgcttgtag gcttacaagt taatattttc acaaaaggat
     2941 taaaaggctt gccttttaaa ataaagaact cgattttcat aaggaggaaa tcattcatgg
     3001 tagttaaagt tggtattaac ggtttcggac gtatcggtcg tcttgctttc cgtcgtatcc
     3061 aaaacgtaga aggtgttgaa gttactcgta tcaacgacct tacagatcca gtaatgcttg
     3121 cacacttgtt gaaatatgac acaactcaag gtcgtttcga cggtactgtt gaagttaaag
     3181 acggtggttt cgaagttaac ggtaaattcg ttaaagtttc tgctgagcgc gagccaggaa
     3241 acatcgactg ggctactgat ggcgtagata tcgttttgga agctacaggt ttctttgctt
     3301 ctaaagaaaa agctgagcaa cacatccacg ctaacggtgc taaaaaagtt gttatcactg
     3361 ctcctggtgg taacgatgtt aagactgttg ttttcaacac taaccacgac atccttgatg
     3421 gtactgaaac agttatctca ggtgcttcat gtactacaaa ctgtttggca ccaatggcta
     3481 aagctcttca cgatgcattt ggcgttcaaa aaggtttgat gactacaatc cacgcttaca
     3541 ctggtgacca aatggttctt gacggaccac accgtggtgg tgaccttcgt cgtgcacgtg
     3601 ctgctgctgc aaacatcgtt cctaactcaa ctggtgctgc taaagctatc ggcttggtaa
     3661 tcccagaatt gaacggtaaa cttgacggtg ctgcacaacg tgttccagtt ccaacaggtt
     3721 ctgtaactga attggttgca actcttgaca agaaagtaac tgctgaagaa gtaaacgctg
     3781 ctatgaaagc tgctgctact gaatcatttg gttacactga agaccaactc gtatcttcag
     3841 atatcgtagg tatctcattc ggttcattgt ttgatgcaac tcaaactaaa gttatcgaag
     3901 ttgatggcga gcaattggtt aaagttgttt catggtacga caacgaaatg tcttacactg
     3961 cacaacttgt tcgtactctt gagtacttcg caaaaatcgc taaataatcc ttagtgaaaa
     4021 tcgaagaggc ttcggcctct tttttctatt attcgttctt tttgtagatt tgtgaaaaaa
     4081 atatctttat gcaagaaaaa atacagaaaa tatgatacaa tggtaaagta aatataattt
     4141 aaggagttct tatctaatgg caaaattgac tgttaaagat gtagaattga aaggcaaaaa
     4201 agttcttgtt cgtgtggact tcaacgtgcc tttgaaagat ggcgttatca ctaacgataa
     4261 ccgtattaca gcagctcttc caactatcaa gtatattctt gagcaaggtg gacgtgcaat
     4321 tcttttctct caccttggtc gtgtgaaaga agaagctgac aaagaaggta aatcattggc
     4381 tcctgtagca gctgacttgg cagctaaatt gggtcaagac gttgctttca tcgcaggtgc
     4441 tactcgtggt gctgaattag aagcagctat caatgctttg gaagatggac aagttctcct
     4501 tgttgaaaac actcgtttcg aagatgttga tggtaagaaa gaatctaaaa acgacgaaga
     4561 acttggtaaa tactgggctt cacttggtga tggtatcttc gttaacgatg catttggtac
     4621 tgcacaccgt tcacacgcat caaacgttgg tatctcagca aacgtagaaa aagcagtagc
     4681 tggtttcctt ttggaaaacg aaattgctta catccaagaa gctgttgaaa ctccagagcg
     4741 cccattcgtg gcaatccttg gcggttcaaa agtatctgat aagatcggtg ttatcgagaa
     4801 ccttcttgaa aaagctgaca aagttcttat cggtggtggt atgacttaca cattctacaa
     4861 agctcaaggt atcgaaatcg gtaactcact tgtagaagaa gacaagcttg atgtggcaaa
     4921 agcacttctt gaaaaagcta acggtaaact gatcttgcca gttgattcaa aagaagctaa
     4981 cgcatttgct ggatacactg aagttcgcga tacagaaggc gaagcagttt cagaaggctt
     5041 ccttggtctt gacatcggtc ctaagtcaat cgctaagttt gacgaagcgt tgactggtgc
     5101 caaaacagtt gtttggaacg gtcctatggg tgtatttgaa aacccagact tccaagctgg
     5161 tacaatcggt gtaatggacg ctatcgtgaa acaaccaggc gtgaaatcaa tcatcggtgg
     5221 tggtgactca gcagcagcag ctatcaacct tggccgtgca gacaagttct catggatctc
     5281 aactggtggt ggtgcatcaa tggaactcct cgaagggaaa gtgcttccag gacttgcagc
     5341 tttgactgaa aaataggcgg taagtcagga atctatgatt ccgtagacgc acccccgcaa
     5401 ggctgaatag gttggtcaca agcgtagcaa agtgaactgc cattcagcta ctgcgtatga
     5461 aagatgaacg atgaaaagag ttgggcaacc agctcttttc tagtgcaaag gctagatttt
     5521 ctgtgaacgt agtgagttta gaaaatcagc ctaggtaaag gctaaaatgc aacggatttc
     5581 cgttgcattt tgtacatcgc gtagagtttc tacgaagcta agcgaaacaa gatgtacttc
     5641 caggacttgc gacggcacgg agtgcctagt gccatgccta gtctttctgg gaagtgtgac
     5701 ttagaaagac tggctaggtg ctgccttgac tgagaaatag gcggtgagtc agttcaacat
     5761 atctgggaga tatgttgagg ttagaaatag aagaagcgaa gcttctgtca aaaatgattc
     5821 cgtagattgt tactttgatt tttcttggtg acaacttcaa atagtccact gtgctatttg
     5881 aaccccgcaa ggctgaatct tggtcacagc tcccattcag ctactgcgca aaaaatataa
     5941 atgtaaaaaa gacgttgttt ttttgcagcg tctatttgtt tgtcttactt ctgggttcct
     6001 tcttgcagct gatttaaagt ggcagattat tggtttttcg aaaagctggc gtgaacagga
     6061 ggcttttcca gtcgagctta ggagaaaaga aaagctgggc aggtatttgc tattctattt
     6121 tccgaaatca tgttagaata gaggtatgtt taaaaaatat acatttgatc caaagaaatt
     6181 tcggttgggg atgcggacgt tcaaatcggg tttggcagtc tttctagtta ttctactctt
     6241 tggctatatg ggctgggaag ggattcagat tgcggctttg acggctgtgt ttagtttacg
     6301 agaagacttc gatcagagtg tccattttgg agcttctcgt attctgggta attctattgg
     6361 tggtttttat gcgctacttt tctttatttt ggataggtta ttcttagatc atttttgggt
     6421 aactgcggtt tttgttccga tatttgtcat gttaacgatt atgacaaatg tggcgatgaa
     6481 taataaagcg ggaattattg gtggagtgtc agctttatta attattacat tgtctattcc
     6541 tgctggtgat acaatccaat atgtgtttat tcgtgtgttt gaaaccttta tcggagtttt
     6601 cattgcgatt ctagttaatt atgatgtgaa tgttataaaa aaacgttttc aggataaata
     6661 atgttataaa atataacatc gcctattgac ctcaaaaaaa aattctccta taatggtagg
     6721 cagaaaggag ttcgttatga gagaaaaaga gtttcgtcgt tccttagcca tctttccgat
     6781 cggtagtgtg atgaagttga cagatttaac tgctcgtcaa attcgttact atgaagatca
     6841 aggcttgatt aagcccgatc gcaatgaagg gaatcgtcgc ttgtattctc taaacgatat
     6901 ggacttactt ttagaaatca aggatttttt ggatgaaggc ttgaatattg ctgcgattaa
     6961 gaaggaatat gcaaatcggg aagcgaaagc taaggtccaa aaacagcaga aaaccttgac
     7021 tgatgaagat gtccgtcgta tcttacatga tgaattcagt cgtcagggac gattttcaag
     7081 tcctagttcc attttccgtt cgtcgtaatt agcttttaaa atagaggaga aaaataatga
     7141 cattcacagt ggcagatatc aagcacgata tcaaagagaa aaacgttacc ttcctacgtc
     7201 ttatgtttac ggacatcatg ggagtgatga aaaacgtaga aattccagca actgatgagc
     7261 aggtcgaaaa ggttttgtca aataaggtca tgtttgatgg ttcatctatt gaaggatttg
     7321 ttcgtatcaa tgaatcagat atgtatcttt acccagactt ggatacatgg actatcttcc
     7381 cttggggtga tgaaaatggc cgtgtagctg gcttgatttg tgatatttat acaacagatg
     7441 ctaagccttt tgctggtgac ccacgtggaa atttgaagaa atcgcttcgt catatggaag
     7501 aggcaggttt ctcttcattc aaccttggtc cagaaccaga attcttcctc tttaagatgg
     7561 atgaacaagg aaatccaacg cttgaagtaa atgataaagg tggttatttt gacctcgcac
     7621 caacggactt ggctgataat acacgtcgcg aaattgtcaa tgtcttgaca gagatgggct
     7681 ttgaagttga agcgagccat cacgaagtgg cagtaggtca gcatgaaatt gacttcaaat
     7741 atgcggacgt cttaaaagct tgcgacaata ttcaaatctt caagttagtt gttaaaacaa
     7801 ttgctcgtaa gcatggtatg tatgcgacat ttatggccaa gcctaagttt ggtattgctg
     7861 gctcaggtat gcactgtaac atgtccctct ttgacaagga tggaaacaat gccttctttg
     7921 atccagagga tcctcgcggt atgcagctgt ctcaaactgc ttaccatttc cttggtggtt
     7981 tgattaagca tgcttataac tatactgcta ttacaaaccc gacagtgaac tcttacaagc
     8041 gtttggttcc aggctttgaa gctcctgtgt atattgcttg ggctggtaaa aaccgctcac
     8101 cattggttcg cgtacctgca tcacgtggaa tgggaactcg tttggaattg cgctcggttg
     8161 atccaactgc caacccatac ttagctatgg cagttctatt ggaagttggc ttggaaggta
     8221 ttcaaaataa aattgaagca ccagcaccag tagaatctaa tatctatgca atgtctgatg
     8281 aggagcgtcg tgaagcaggt atcactgatc ttccttcaac tcttcacaat gcattgaaag
     8341 ctcttcgtga agacgaggta gttcgtgcag ctctaggtga tcatatctat acgaatttct
     8401 tggaagctaa gaaaatcgaa tgggcaagct acgcaaccta cgtttctcaa tgggaaatcg
     8461 acaactattt ggatatgtat taaacaaagg accccgacgg gtcctttgtt catgagcttg
     8521 aaaatcagag agcgagtaat ggcgcttgga ccattttttc atgagcttga aaaccagata
     8581 gcgaattggg accccgacgg gtcctttgtt cacgagccga gaaattggaa agcgtgtaat
     8641 ggtccagtgg agtgaaatag tctgggaaga gactgtttca gtctgagcta ataaatagca
     8701 gggcgagggg atggacatga gcttgaaatc tgtcttttta caagctgggt tatcttgtta
     8761 atataaaata aatcccagag gtctcacctc tgggatttta gtgtgttatc ggtcaggcgt
     8821 cagaatcatt gggataatga ttggttcacg ctctgttttt tcgtatagga atggtcgtag
     8881 ggcgttaaca atggcgccgt tgactgtttg gatattggca tctttattgc gcatggcgat
     8941 gcggatagcg ttgaaaagga cgcgttggct ttcgcgaatg agctcgccag attctctcat
     9001 atagatgaag ccacggctga ggatgtctgg tcctgctaat atcatcttag aattaaaatc
     9061 gacagtggct actgcaagga caacaccatc ttctgaaaga tcgcggcggt ctttgaggac
     9121 agctgcgccg atttcaccga tgcggtttcc atcaacatag atgtcttggg cgttgaattg
     9181 accagcgaga cgtgcagaat cttttgtcag agcaaggaca tctccgtttt ccatgatgaa
     9241 gatattatct ttgggaacgc ctgtatcaac agctaggctg gcatggattt tttgcatgcg
     9301 gtattcacca tggacaggca tgaagtattt tggtttgatc aagcggagca tgagtttttg
     9361 ctcttgttga ccaccgtgcc cagaggtatg gatgttgtta atcttgccgt gaatcacatc
     9421 gacaccggct tcaatcaaga tattgatgag cttgttgaca cctgtggtat ttcccggaat
     9481 aggactggac gagaagataa ccgtgtcgcc tggctggagt tgcacctgac ggtgggtacc
     9541 gtgggcgatg cgagagagtg ctgccatagg ctcaccctgg ctacctgtac agagaatcat
     9601 aatttcgctg gcagggtatt ctttgatctc gtttggctcg atgaaggtat ccttaggcac
     9661 cttgatgtag ccgagttcga taccgttaac aatggctttt tccatggagc gtccaaaaac
     9721 agctatcttg cgtccggtct taaccgctgc atcagccgcc tgttggagac ggaagatgtt
     9781 ggaggcaaag gaagcaaaga tgatacgtcc atggatgcct tcaatcagct tcataatgga
     9841 ctgaccgacc actttttccg agttggtgaa ggttgggact tcagcatttg tcgagtcgga
     9901 gaggaggcag agaacgcctt cttcaccgag ggcagccatg cggtgaaggt ctgctggctc
     9961 gccaactgga gtgaagtcga acttgaagtc accggtacag acgatttttc cttgcggggt
    10021 gtcaacgacg ataccaagtg gttctggaat ggagtgggtg gtgcggaaga agctgacctt
    10081 gaggtgcttg aaggtcaact cagtattgtg gttgatttca tgcaaagtcg catcacggag
    10141 cagaccgtgt tcttccaatt tgcctcgaat aagggcgagg gctaaaggtc cagcatagat
    10201 tgggacattg gcctgcttga gtaagaaggg aatgcctccg atgtggtctt cgtgcccgtg
    10261 ggtaataacc agacctttaa cgcggtctag gttttcaacg atgtaggagt agtctgggat
    10321 aacgtagtcg atacccaata ggtcatcttc tgggaacttg ataccggcat cgacgatgag
    10381 aatttcatcc ttatactcga taccgtaggt atttttcccg atttctccca aaccaccgat
    10441 ggcgaaaacg ccaacttcat gaggttttag attgactgat gacatggatt aaaactccgt
    10501 aattttgaaa tctgcgtgct ctttctcgta ttcaagatga ttgtctgata agaggtcgat
    10561 aaattcgata ttgtattcag ggcggttggt ttccaccaat tcacgcgcaa taatacgacc
    10621 ttccaattct gatgcagcat cgatgtctag ataaagagca cgtgtttgct cgcgacgtgg
    10681 gctaattttt gattcttgat agaatacttt ataaatcatg tgtagtatag ttcctttctt
    10741 tttgactggc aactatgaaa aaagccccaa acagttgggg ctgtctggta atgcctattc
    10801 aattttctcg agttgtcaat ttattcagtc taaatgtact cttcattata ccataaaata
    10861 tgctgatggt aaaagggttt ggtaggaaaa tggaaaagtg tcatgatttt cagaaattcg
    10921 gtatttc
//
LOCUS       DASFRC010000075        10908 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.075, whole genome shotgun sequence.
ACCESSION   DASFRC010000075 DASFRC010000000
VERSION     DASFRC010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10908)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10908)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10908
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.075"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..1151)
                     /locus_tag="U1087_001296"
     CDS             complement(<1..1151)
                     /locus_tag="U1087_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan bridge formation glycyltransferase
                     FemA/FemB family protein"
                     /protein_id="HEM4755773.1"
                     /translation="MAFCQITKEEFLKHCEQVNEKSFFQSIEMAGLLSKRGYDVRYAG
                     FKNSQSEIVISTLLFCKKMAGGLYMELNSGPLVTDDAYLEKFYQSLKNYAKREGVLEL
                     VVKPSQAYQLFDSVGNPISEADTQLIEKMVQVGFKHDGLQTGYPNGEPVWHYVKDLQG
                     YSTTSLLQSYNKNSKRNIKNSESYGIRIRGINHKELSAFKKIIEETGARQGFEDRDSG
                     YYNSLFESFGTQADFLVAELDPKASLKQIEKEIETSVRNSKQYAQQVQKLLKKQEVVQ
                     NILNKTQTAPIFLACALIIYDVNEATYLFGGSYSEFQSLSAPFLLQYEAMQRAIKRNL
                     KRYNFLGIQGIFDSSDGVLRFKQNFNGYILRKAGTFRYYPHPIKHKIIQ"
     gene            complement(1151..2377)
                     /locus_tag="U1087_001297"
     CDS             complement(1151..2377)
                     /locus_tag="U1087_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyltransferase"
                     /protein_id="HEM4755774.1"
                     /translation="MFYTYKIGISAEEHDSFVKQSPQANLLQSSQWATVKSEWRNERL
                     GFFKDGKLVAVASLLIRRLVVPFGFTMIYIPRGPVMDYEDAELVSFVFKSIEEFALRE
                     RSVVIKFDPFIRLSSKTITGDREEELNVLAVKDRIVDLGGIWSGRVQTMSATIQPTCH
                     AVLYSESFSEESLNKRVRQNIRSARNKGIEIRIGREELLRDFSELLKKTEERKSIRLR
                     GREYYQKILNAYPENSYIVVAYLDLAERYEQLSYLEEKLVKEAMTFTSTTRQSKIENY
                     KKETRRINTELEMINSLIRNGSKLVPLAGTLTIDFAGTSENIYAGMDEKFKHYQPALL
                     TWVETAKYAFERGVKWQNLGGIEPTLDGGLYHFKSHLNPVVEEYIGEFDLIVSPILHK
                     IFQVLLEIRKKLRKKK"
     gene            complement(2673..3401)
                     /locus_tag="U1087_001298"
     CDS             complement(2673..3401)
                     /locus_tag="U1087_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM4755775.1"
                     /translation="MNENWTVKQVSQLTGLTVRTLHHYDQIGLLKPAFVAENGYRYYN
                     QENLARLQEILLFRELDFPLKDIQQLLYVTEINRQQVLRDHITLLELKRERLDRIINH
                     ARLLTEKGGEVMDFHAFDSSQLEAYKTEAKERWGQTAAYAEFEEGYDASKDQAFAREM
                     HSIFEAFGKMQSLEASLPDVQVQVATLQAYITENFYTCTKEILQGLGLMYVEDERFSA
                     NIDRAGGPGTASFVSQAIAIYCQE"
     gene            complement(3464..3904)
                     /locus_tag="U1087_001299"
     CDS             complement(3464..3904)
                     /locus_tag="U1087_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755776.1"
                     /translation="MTVWFQDVVDSLQMISQGDRYYYDSHIDELVYLSVGEFRIESRD
                     GLEEEIEEDVAGRFVGLPTYYDFNPYTFMELYISDLTDGDLSGRLSRAIRGSGAFRRF
                     KNELERCDRLEEWYAFETQCYKELVLDWCQENEIAIVDNRLKKM"
     gene            complement(3908..5560)
                     /locus_tag="U1087_001300"
     CDS             complement(3908..5560)
                     /locus_tag="U1087_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755777.1"
                     /translation="MENWMDYFKPHIVDRGYNLFLDDAVQGLQETGEGYYALVSGSQV
                     YEVEIDLEHGQLVSMWCECPHAQEMNHCKHMAAVLFAISELEGQPAVEGKGQSLAQLL
                     EKLTVEQLRAIVLELAQEDRELANRIQLHFSAQLSSKQVENVKKAIRDLGLPFVDRRT
                     GYIEYRQTRDYERTVEKAMHQYLQPLLDRCEYANFLAVSDAFYHQICQQELDDSIGTT
                     GSLLYRLAGYWQHLLTVAPDKIVQELLDWCLGQLSGYEVAEDLLMEFVETEFQEEPLL
                     QQKLTYFQTTLQAIEEGDMSSWLWKFRRDRFALLCYRLLVQLGSSEADLLTFQANHWE
                     VAGLRKLAIAQAVANQQLDRAVHLLQESKRLDAQYRGLVSDYSQQLRDIYRSQGQDDK
                     VREELLEMIFSAGDTDLELLEELRDYVSREEWQSYLDDLLEDGRFQSQQLKLLQLADR
                     PQELLDRITASYWFLENLDRFEDYLSEKLPEQLRDAYAQALCQQMDVASSRSRYRQLA
                     GYLVKIAGLPDGKVVSTSLRTSWKVQYPRRKAMIEELDAVRW"
     gene            complement(5659..6747)
                     /locus_tag="U1087_001301"
     CDS             complement(5659..6747)
                     /locus_tag="U1087_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HEM4755778.1"
                     /translation="MISGIIAEYNPFHTGHKYLLEQAEGLKIVVMSGNFMQRGEPAIV
                     DKWTRAQMALEHGADLVVEMPFLVSVQSADHFAKGAISILHRLGVEKLVFGTEEMLDY
                     QKIADIYVDKSEEMENFVKNLPDNLSYPQKTQAMWQEFAGLTFTGDTPNHILALAYAK
                     AVAGTGIQLGPVQRQGAGFHSEEVETTYASATAIRKGADQLDLVRDFLPSASLFEEAT
                     KVSWRNYFPLLRYQIATHSDLSQVFQVNEELASRIRSAIGSAATVEELVNAVATKRYT
                     KARVRRVLTYVLVNAVETPLPDAVHVLGFSARGQTYLRTVKERVGLVTRIGKEPWDSL
                     TQQADAVYQLGADAMAEQTYGRVPVRVE"
     gene            complement(6791..7417)
                     /locus_tag="U1087_001302"
                     /pseudo
     CDS             complement(6791..7417)
                     /locus_tag="U1087_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730151.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(7592..8731)
                     /locus_tag="U1087_001303"
                     /pseudo
     CDS             complement(7592..8731)
                     /locus_tag="U1087_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730151.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(8744..9490)
                     /locus_tag="U1087_001304"
     CDS             complement(8744..9490)
                     /locus_tag="U1087_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM4755779.1"
                     /translation="MATYETFAAVYDEIMDDSLYDKWTDFSLRNLPQDTKTILELACG
                     TGIQAVRFAQKGFEVTGLDLSYEMLELAQKKAEAAGVMMELAQADMMALEGVGDFDAV
                     TCYSDSLCYMSDREAVLRVFEGVHSVLNQGGTFLFDVHSIYQMEKVFAGYSYHENYED
                     FAFVWDTYEGEHEHSIVHELTFFVKDKDSQEERFIRRDEVHEERTYPIETYVELLKEA
                     GFASVEVFADFEDQAPTETSQRWFFKCKKK"
     gene            complement(9644..10003)
                     /gene="rsfS"
                     /locus_tag="U1087_001305"
     CDS             complement(9644..10003)
                     /gene="rsfS"
                     /locus_tag="U1087_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HEM4755780.1"
                     /translation="MKELDLVKVVVQAADDKRAEDLVVIDVQGVTSLTDYFVIASSMN
                     SRQLEAIAENIREKVAEVGIKSSRVEGDSNGGWVLLDLGGVVVHIFSEEMRDLYNLEK
                     LWHEGSFLEVADFLEEE"
     gene            complement(10005..10514)
                     /locus_tag="U1087_001306"
     CDS             complement(10005..10514)
                     /locus_tag="U1087_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HEM4755781.1"
                     /translation="MKSALLVIDIQNLLVEEKPYAIEERLALWQDSLAQARQAGLEVI
                     HVRHHDQELVKGTADWEIHSIVAPLASEKIFDKTFNSAFKETGLHAYLQEKGIEQLII
                     MGMATNFCIDTTIKVAFELGYKVAVIQDGTTTGYSGKLDAKDLIDHHQNIWSWNFAQV
                     DKLENIIRG"
     gene            complement(10511..10828)
                     /locus_tag="U1087_001307"
     CDS             complement(10511..10828)
                     /locus_tag="U1087_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM4755782.1"
                     /translation="MPPYAIWVDEQVVGFALIDIDEDIQQYMLWRFMIGQEFQGKGYG
                     QAALEVVIAMAQSHPVCDHLIAAYVKGNQKMAHLLEKNDFVLDSEEERELVFRLETPG
                     VKL"
BASE COUNT         3110 a         2680 c         1796 g         3322 t
ORIGIN      
        1 atttgaatta ttttatgctt tatcggatga ggatagtaac gaaaagtacc agcttttctc
       61 aaaatataac cattaaagtt ctgtttaaac cgaagaacac catctgagct gtcgaatatc
      121 ccttgaatgc caaggaaatt ataacgctta agatttcgtt ttattgcacg ttgcatcgcc
      181 tcatattgaa gtaagaaagg tgcagatagg ctttgaaact ctgaatatga gccaccaaaa
      241 agataagttg cctcgttcac atcataaatt atcagtgcac atgccaaaaa aataggagct
      301 gtctgagttt tatttaaaat attttgaacc acctcctgtt ttttcaacaa tttctgcact
      361 tgctgtgcat actgttttga atttctaaca cttgtttcta tttccttttc aatttgcttt
      421 agactggctt tcgggtcaag ttctgcaact aaaaaatctg cctgtgtacc aaagctttca
      481 aaaagactgt tatagtaacc actatctcta tcttcaaagc cttgtctagc tccagtttcc
      541 tcaattattt ttttgaaagc tgaaagctcc ttatgattga taccacgaat cctgataccg
      601 taactttctg aattttttat gtttcgttta ctatttttat tgtaggattg caataacgac
      661 gttgttgaat acccttgcaa atccttcaca taatgccaaa caggctctcc atttggataa
      721 cctgtttgta agccatcatg tttaaatcca acttgcacca tcttctcaat tagttgagta
      781 tctgcttcac taattggatt ccctacacta tcaaagagtt gataggcttg ggaaggcttg
      841 accaccaatt caagtacgcc ttcacgctta gcatagtttt ttaaagattg ataaaatttc
      901 tccaaataag catcatcggt aaccagcggt ccagaattca attccatata caaaccacca
      961 gccatcttct tacagaaaag caaagtagaa ataacgattt ctgattgtga atttttaaaa
     1021 ccagcatagc gaacatcata tcctctcttg gatagtaatc cagccatctc aatagattga
     1081 aaaaatgatt tttcatttac ttgttcacaa tgctttaaaa attcttcttt agttatttga
     1141 caaaaagcca ttattttttc ttccttaatt tttttctaat ttccagtaaa acttgaaaaa
     1201 tcttatgtaa tattggcgaa acaatcaaat cgaattcccc aatatactct tctactactg
     1261 gattcaaatg tgatttaaag tgataaaggc ctccgtctaa agttggctct attcctccta
     1321 aattttgcca tttcacacct cgttcgaaag catactttgc ggtctccacc catgttagta
     1381 aagcaggttg ataatgttta aacttttcat ccataccagc atagatattt tcagatgttc
     1441 ctgcaaaatc aattgtcaaa gtaccagcca atggaactaa cttactcccg ttacgaatca
     1501 gagaatttat catttctaat tctgtattta ttcttcgggt ttctttttta taattttcaa
     1561 tcttcgattg tcttgtagtg gaggtgaaag tcatggcttc ttttactaat ttttcttcaa
     1621 gataagataa ctgttcatat ctctctgcta aatccaaata ggcaactaca atataagaat
     1681 tttctggata ggcattcaat attttttgat aatactctct cccccgcaag cgaatagatt
     1741 tgcgctcctc agtctttttt aatagctctg aaaaatctct taacaattcc tcacgaccaa
     1801 ttcgaatctc aattccttta ttacgcgccg accgaatatt ttgtcgaact cgtttattta
     1861 gtgattcctc tgagaaggat tcgctatata atactgcatg acaagtaggt tggattgtag
     1921 ccgacatggt ctgcactcga ccagaccaaa tacctcccaa atcaacaatc ctatctttga
     1981 cggcaagtac atttaattct tcttccctat ctcctgttat agttttacta gatagtcgaa
     2041 taaatggatc gaattttata acaacactgc gttctcggag ggcaaattct tctatggact
     2101 taaatacaaa tgacactaat tcagcatctt cataatccat tacaggacct cttggtatat
     2161 aaatcatcgt aaaaccaaat ggtactacca atcttctgat aagaagagaa gcaactgcca
     2221 ctaatttccc atctttaaaa aagcctagtc tctcatttcg ccactcactt tttacggttg
     2281 cccactgact actctgcaaa agattggcct gtggtgattg ctttacaaat gaatcatgtt
     2341 cctcagcaga aatacctatt ttataagtgt aaaacattga ttattcccct tgttcataat
     2401 tacttttaac gctaattagg aagggcttgc ccgtagtgtc aagccctgct atactagtat
     2461 agcaggcgat tttgtcaagt atttttactc aatcataaaa aataataatg ttttaccata
     2521 tatgccacga aatcacttgt gcatgtatat aatagcttct tttgcttcta atattttaaa
     2581 atttagcaat gtacctccaa gtcataatta aattgatata tacatagcca agatgaacat
     2641 aaaaagccta gttctcacta gactttcctt atttattctt ggcaataaat cgcaatggct
     2701 tgactgacaa aactggctgt tcctggtcca cctgctcggt caatgttggc tgaaaatcgt
     2761 tcatcttcaa cgtacataag acctagcccc tgcaagattt ccttggtgca ggtgtagaag
     2821 ttctctgtga tataggcctg caaagtagct acctgaacct gtacatctgg aagacttgct
     2881 tccaagctct gcatttttcc aaaagcttca aaaatactat gcatctctcg ggcaaacgct
     2941 tgatccttac tggcatcgta accttcttca aactcagcat aggccgcggt ctgtccccac
     3001 cgctccttgg cctccgtctt gtaggcttct agttgactgc tgtcaaatgc gtgaaagtcc
     3061 atgacttctc ctcctttttc tgtgagcaat ctggcgtgat tgatgatgcg gtccagccgt
     3121 tcccttttga gctctaaaag ggtaatatgg tcccgcaaga cctgctgacg attgatctcc
     3181 gtcacataca gaagctgctg aatatctttg agaggaaaat ccaattcacg aaataagaga
     3241 atttcctgca gacgagccaa attctcctga ttatagtagc gataaccatt ttcagccaca
     3301 aatgctggtt tgagcaaacc aatctggtca tagtggtgca aggtcctcac cgtcaatcct
     3361 gtcaactgac taacctgctt aactgtccaa ttttcgttca tagaaatctc ctctctatgc
     3421 ccagtataag ggataacgta aggtgagagt caagggaaaa atattacatt tttttcagcc
     3481 gattatccac aatagcaatt tcattttctt gacaccagtc cagtacaagt tctttgtaac
     3541 attgtgtttc aaaggcatac cattcttcca aacggtcaca tctctctaac tcattcttaa
     3601 aacgtctaaa agcaccgctc cctcgaatag ctcgagatag acggccagac aagtctccat
     3661 cagtcaaatc agaaatatag agttccataa atgtgtaagg gttgaagtca taataagtcg
     3721 gtagacctac aaaccttcca gctacatcct cctcaatctc ctcttctaaa ccatcacggg
     3781 attcaattct gaattcccca acagacagat agaccaattc gtctatgtga ctatcataat
     3841 agtacctatc accttgacta atcatctgca acgaatcaac cacatcttga aaccaaacag
     3901 tcatacccta ccacctcact gcatctaatt cctctatcat ggctttgcgt cgcggatatt
     3961 gcactttcca cgaagtgcga agacttgtac tcaccacttt cccatcaggt aaacctgcaa
     4021 tttttactaa ataccctgct aactgacgat agcggcttcg actactagcc acatccatct
     4081 gctgacaaag agcttgagcg taggcatctc gtaattgctc aggcaatttc tctgataaat
     4141 agtcttcaaa tcgatccaaa ttttctaaga accagtaact tgctgtaata cggtccaata
     4201 attcctgcgg tcggtctgcc aattgcaaca acttcaattg ctgtgactgg aaacgaccat
     4261 cctccagcaa atcatctaag tagctctgcc attcttccct agaaacatag tcccgtaact
     4321 cctctagcag ctccaaatca gtatccccag cagagaaaat catctccagc agttcttctc
     4381 taaccttgtc atcctgcccc tgagaccggt agatgtcccg taactgctgg ctataatctg
     4441 acaccagtcc cctatactgg gcatccaggc gcttactttc ctgcaagagg tgaacggcac
     4501 ggtctagttg ctgatttgct acagcctggg caatggctag tttacgaagt ccagccacct
     4561 cccaatgatt ggcctggaag gtcagcaagt ctgcctcact agagcccaac tgaaccagca
     4621 acctgtaaca gagcaaggcg aatcgatcgc gacggaattt ccataaccaa gaggacatat
     4681 ctccttcttc tatcgcctgc aaagtagttt gaaaataggt caatttctgc tgaaggaggg
     4741 gttcttcttg aaactccgtt tctacaaatt ccatgagaag gtcttctgca acctcatagc
     4801 cacttagctg tcctaagcac cagtctagta attcttggac aatcttatcc ggagctacag
     4861 tcaataaatg ctgccagtag ccagcaagtc tataaagcag actaccagtc gttccaatgg
     4921 aatcatccaa ctcttgctgg caaatctgat ggtaaaaggc atctgataca gccaagaaat
     4981 tcgcatactc acacctatcc agcaaaggct ggagatactg atgcatggcc ttttccacgg
     5041 tccgttcgta atccctagtc tgcctatact cgatatagcc cgtacgcctg tccacaaaag
     5101 gcaaacccaa gtctctaatt gcctttttca cattttccac ttgcttagag cttaactgag
     5161 ctgaaaaatg cagctgaatt cgattggcca gttccctatc ttcttgagct aattcaagaa
     5221 caatagcccg tagttgctca actgtcaatt tttccaagag ctgggcaagt gactgtccct
     5281 tcccctcaac agctggctga ccctccaact cagaaatggc aaacaagact gcagccatgt
     5341 gcttacagtg attcatttcc tgagcatggg gacactcaca ccacatactg accagctgac
     5401 catgctccaa gtcaatctcc acctcataga cttgactacc agagacaaga gcatagtagc
     5461 cctcacctgt ctcttgaagc ccttgaacag catcatctaa aaacaaattg taacccctat
     5521 ctacaatgtg aggcttaaaa tagtccatcc aattttccat gatttatgtc ctttgatttt
     5581 gctacttaaa ttatacaaaa aaaataggag cattttcaag tcaacgacaa aaacttccca
     5641 ttctttattg cattcatctc actccaccct caccggcacg cgcccatagg tctgctctgc
     5701 cattgcgtca gcgcccagtt gatagaccgc atccgcctgc tgggtcaggc tgtcccaggg
     5761 ctctttgccg atcctcgtca ccaagcccac tcgctccttg accgtcctga gataagtctg
     5821 acctcgagcc gagaagccta ggacatggac cgcatctggc aagggagttt ccaccgcatt
     5881 gaccaaaaca taggtcaaca cccgccgcac ccgcgccttg gtgtagcgct tggtcgcaac
     5941 agcattcact agctcctcca cggtcgctgc gctcccaata gcagagcgga tacgactggc
     6001 tagttcttcg ttcacctgaa agacctgact aagatctgag tgggtcgcaa tctggtagcg
     6061 gagcagcgga aaataatttc tccagcttac cttggtcgcc tcttcaaaga gactggcaga
     6121 cggcaagaaa tcacgcacca agtccagctg gtcagcaccc tttcggatag ccgtcgccga
     6181 ggcgtaggtc gtttccacct cttccgagtg aaaaccagcc ccctgccgtt gcactggacc
     6241 aagctgaatg ccagttcccg ctaccgcctt agcataagcc agagccagaa tatggttggg
     6301 cgtatcacct gtgaaagtca gcccagcaaa ctcctgccac atagcctggg tcttctgtgg
     6361 ataagagaga ttgtctggca agtttttcac aaaattttcc atttcttccg acttatccac
     6421 atagatatcc gcgattttct ggtaatccag catttcttcc gtaccgaaaa ccagtttttc
     6481 cacacctagc ctgtgtaaaa tgctgattgc tcccttggca aaatggtcag ccgactggac
     6541 agacaccaaa aagggcatct cgacaacaag atctgccccg tgttccaaag ccatctgagc
     6601 ccgtgtccac ttatccacaa tggctggctc accccgttgc ataaaattgc cagacataac
     6661 cacaattttc aagccttccg cctgttccaa caggtactta tgccccgtgt gaaaaggatt
     6721 gtattctgct attatccctg aaatcatccc ctacctccta gactttattc aaccatctac
     6781 aacctaatgc ctaaattaca gcaaattctt tttctgcaat ctgtactgct tcaagtatat
     6841 cctcttctgc taaaaccgtg cgttttgaga tcactctttc aacctctcgt tcaattattg
     6901 actctctagt aaacatccta tttttaacag attgcttttt ctggaacatg tctttaagtc
     6961 gttctcctaa tttcttatcg aagatattat tttgaatttc tttaaactct tcttctgaaa
     7021 gcgccatagc cataacaata tcaataaatt cttcttttag aattgcaaac atctcaattc
     7081 tgtcatcttc tataaagttg tctaaaacaa ccttagaacc aacagcagcc aatgttccac
     7141 cagctactgc acctacaaat gacccaactg gacctaaaaa tgctccagca actgcaccac
     7201 ctgcaactcc acctagtaag cctgttcctg ctactaagct attctttaat aactgttggc
     7261 tagatattct accttgcagt agatcaaata cgtccggacc tacagtaatt ccgaatgaaa
     7321 taactcctgc tgcttgtcta gcaacagtat tggctgcgac attcttaact gtttgatcag
     7381 cgattttttt agtaagaatt tttccaattt gttgagaagc tgtgtatata gctgctccca
     7441 acaatatcgt ttttactcca gaatagattg ctgattttgc agcttcttca gtatcttttc
     7501 aagcccattt ttccattgca aaaacaagga caaagcttat tcctgcagct ggaatagatt
     7561 gaatagctcc atcaatggca tcatatttta atgaaacaat atttccgccc ttggcaacca
     7621 gttttgcctc attataagta acattccctt ttctaataat cagataggca tcatcaggct
     7681 cactatgacc cggaactttt ccagctttta tttttttctt catgagttga attgattcat
     7741 tatactggtc tttaggaact tctaactgca tccccttata acggtattct cctccattag
     7801 ccttatcaaa tgctgcattt atcgttccac tagcttttgc atagtatttt gtttgaattt
     7861 tttgatttcc aacaattcta tctgccccat ttttaacatt atctctccct acttgctcta
     7921 ctttttggaa aggatacttt atcttgtcta ttacattatt agcatattca gctgcatgcc
     7981 catgtccttg aggagctttt gcaatagcat taaattgaat atctttcaaa tgaaaaccta
     8041 gcatcatatt taaacctata attgatccta ttttagctcc attttgaaaa ttctctgtat
     8101 gaaaatcatt tttttgcaaa cgatcaataa ctttttctaa atagttttca tgtaaatctg
     8161 ccgtataacc tgttttgata attgagttta aatttgcaac tatatttttt tgttgagcgt
     8221 catcaaattg aaaatttagt ctctcaatct tattaggata aaaaagtaga atttttttac
     8281 ccttacaagt aatcttccat aaacctttta aagggaaaaa ctttttgcta attttatact
     8341 taacatcagc atcattattg ctattttcga tttgttctct aaaataaaat ccatcctgag
     8401 ttaacaacaa accatattcc aaaaactcct cgtcaatttt gctcctaata ggactatagc
     8461 caaaaatctc caaattctct acgtcattaa ctgtacaaac aaaatctttg ctccccaata
     8521 taaaccatct agcccgaccg tagggaatct gcgtactaga atattcaaaa gactcagcta
     8581 atttgcataa ataatcacga ataatatctt cattgtattc atgtatttga cgacttgatt
     8641 ttaaccatat ttgaaacaaa gctacataaa ctaataataa caataaaaga ataacaaata
     8701 ttgcaaccaa gataatgata gctacattca tatccaatac cgcctatttc ttcttacact
     8761 tgaaaaacca ccgctggctt gtttctgttg gagcttgatc ttcaaagtcc gcaaagactt
     8821 ccacagatgc aaaaccagct tctttcaata attccacata ggtttcaatc ggataggtcc
     8881 gctcttcatg cacttcatcc cgacggataa atcgctcctc ttgactgtcc ttatctttga
     8941 caaagaaggt caattcatga acgatggaat gctcatgctc accttcgtag gtgtcccaaa
     9001 caaaggcaaa atcctcgtaa ttttcatggt agctatagcc tgcaaatact ttctccattt
     9061 gatagatgga gtgaacgtca aaaaggaaag tgccaccttg attgagaacc gagtgaacgc
     9121 cttcaaagac ccgcaaaacg gcttctcggt ccgacatata gcacagactg tccgagtaac
     9181 aggtcaccgc atcgaaatct cccacacctt ccagagccat catatctgct tgggccaact
     9241 ccatcatgac accagcagct tctgcttttt tctgggccaa ttccaacatt tcataagaca
     9301 ggtcaagacc tgtcacttca aagccctttt gagcaaaacg tacagcctga atccctgtcc
     9361 cacaggccaa ttctaaaatt gtcttggtgt cttgtggcaa gttccgtaag ctaaaatctg
     9421 tccatttatc atacaagctg tcatccatga tttcatcata gaccgcagca aatgtttcat
     9481 aagttgccat attttccttt cataaaaagc agccaatcga ctgcttcatt aacttactca
     9541 gttttcaaga agtccatcac ttctaattac ataatagtga actctctttg gtcactttcg
     9601 agttttatag tgaccagctg aaacagttcc ccaaactgtt tcactattcc tcttctaaaa
     9661 agtctgcgac ttccaagaag ctgccttcgt gccataattt ttctaggttg tagaggtcac
     9721 gcatttcttc tgagaagata tgaacgacta cgcctccaag gtccaaaagg acccagccac
     9781 cgttactatc gccttctaca cggctactct tgattccaac ttccgctacc ttttcacgga
     9841 tgttttccgc aatagcctcc aactggcgac tgttcatgga gctggcaatc acaaagtagt
     9901 ctgtcaggct ggtcacgcct tgaacatcaa ttacaacaag gtcctcagct cgcttgtcat
     9961 cagcagcctg aaccacaact tttactaaat ctagttcttt catcttatcc tctaattata
    10021 ttttctaatt tatccacctg ggcaaaattc catgaccaga tgttttggtg gtggtcaatc
    10081 aagtctttgg catccaattt gcctgaataa cctgtcgtcg ttccgtcctg aattacagct
    10141 accttgtagc ctagttcaaa ggctacttta atcgtcgtat caatgcaaaa attggtcgcc
    10201 atacccatga tgatgagctg ctcaattccc ttttcctgca aataggcatg aagacccgtt
    10261 tccttgaagg cactgttaaa ggtcttatcg aaaatcttct cactagctaa gggtgcaaca
    10321 attgagtgaa tttcccagtc agcagtcccc ttgaccaatt cctggtcatg atggcggaca
    10381 tggatgacct ctagccccgc ttgacgggct tgtgcaaggc tatcttgcca gagggctaat
    10441 cgctcttcaa tggcataagg tttttcctcc actagaaggt tttgaatgtc aatgactaac
    10501 agtgcggatt tcatagcttg accccaggcg tttccaaacg gaagaccaat tctctttctt
    10561 cttcactatc caagacaaaa tcatttttct ccaagagatg agccatcttc tgattgccct
    10621 taacataagc tgcaatcaaa tggtcgcaga caggatgtga ttgagccatt gctattacga
    10681 cctccaaagc agcctggcca tagcctttcc cctgaaattc ttgaccaatc ataaaccgcc
    10741 agagcatata ctgctggatg tcctcatcaa tgtcaatcaa ggcaaaaccg accacctgtt
    10801 catctaccca gatggcgtag gggggcaagg ttctagtaca agtacacttc tcaaagttcg
    10861 agtcaacatc tcagcgcagt ggttgattgg cagctttgtt cgtgctac
//
LOCUS       DASFRC010000076        10850 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.076, whole genome shotgun sequence.
ACCESSION   DASFRC010000076 DASFRC010000000
VERSION     DASFRC010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10850)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10850)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10850
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.076"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            201..1376
                     /gene="trpB"
                     /locus_tag="U1087_001308"
     CDS             201..1376
                     /gene="trpB"
                     /locus_tag="U1087_001308"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003005924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HEM4755783.1"
                     /translation="MTEKGYFGQFGGSFVPEQIQVLLDQLEETFEQYRNDSEFLAEYQ
                     AYLKDYAGRETPLYFAESLSKELGGAKIYLKREDLNHLGSHKLNNVLGQILLAKRMGK
                     TRVIAETGAGQHGVATAAVAARFGLGCDVYMGAEDVKRQRLNVFRMEMMGARVHAVTE
                     GTQTLKEAVDAAFGAWMADLDAFYVLGSAVGPHPYPTIVHEFQKIISLESRRQILEKE
                     GRLPDYVIACVGGGSNAIGAFSQYLPDESVKLIGVEAAGKGVDTELHAATMTKGTVGV
                     VDGMKTISLFDENGGVAPVYSISAGLDYPGVGPEHAHYKETGRVNYVAATDDEAVNAL
                     LTLSRTEGILPAIESSHAIAEAIRLAPQLDKDKIIIINVSGRGDKDVAAIADYLESR"
     gene            complement(1418..2242)
                     /gene="nadE"
                     /locus_tag="U1087_001309"
     CDS             complement(1418..2242)
                     /gene="nadE"
                     /locus_tag="U1087_001309"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000058066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-dependent NAD(+) synthetase"
                     /protein_id="HEM4755784.1"
                     /translation="MTLQETIIKELGVKPSIDPEEEIRRSIDFLKDYLKKHPFLKTYV
                     LGISGGQDSTLAGRLAQLTMEEMRAETGDDSYQFIAIRLPYGVQADESDAQAALAFIQ
                     PDVSLTINIKESTDAMVAAVNANGLAMSDFNKGNAKARMRMIAQYAIAGERKGAVIGT
                     DHAAENITGFFTKHGDGGADILPLFRLNKRQGKQLLAELGADEKLYLKVPTADLEEDK
                     PGLADEVALGVTYNQIDDYLEGKIIDPQAQTIIEGWWNKTAHKRHLPITIFDDFWK"
     gene            complement(2255..3715)
                     /locus_tag="U1087_001310"
     CDS             complement(2255..3715)
                     /locus_tag="U1087_001310"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HEM4755785.1"
                     /translation="MTLFKDDSLTLHTDLYQINMMQVYFDQNIHNKHAVFEVYFRSQP
                     FKNGYAVFAGLERVVNYLNNLSFSQTDIDYLTELGYPQDFLDYLSQLEMTLTVRSAKE
                     GDLVYANEPILQIEGPLAQCQLIETALLNIVNYQTLIATKARRIKAVIEDEPLMEFGT
                     RRAQEMDAAIWGTRAAFIGGASATSNVRAGKIFGIPVAGTHAHALVQTYGDDYKAFKA
                     YAETHHDCVFLVDTYDTLRIGVPAAIKVAKEMGDKINFKGVRIDSGDMAYISKKVRQQ
                     LDDAGFTDAKIYASNDLDENTILNLKMQKAKIDVWGVGTKLITAYDQPALGAVYKIVS
                     IEDEDGNMRDTIKLSSNAEKVSTPGKKQVWRITSKEKGKSEGDYITFADTDVTQMDSI
                     YMFHPTYTYINKTIENFDARPLLVPIFEKGKQVYELPSLAEIQTYANQEFDKLWDEYK
                     RVLNPQLYPVDLAQDVWDNKMNLINRIRKQTQTKSI"
     gene            complement(3823..4467)
                     /locus_tag="U1087_001311"
     CDS             complement(3823..4467)
                     /locus_tag="U1087_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HEM4755786.1"
                     /translation="MKTIILFFLGASIGSFLGLVIDRFPEQSIISPSSHCNACKRRLK
                     AWDLIPILSQLSTKSKCRYCKAKIPYWYLGLEFLAGLVVLLCHFQVLNLTETILILAG
                     LVLTIYDIKHQEYPFAVWLVFTFIALVLSQLNWLFCAFLLLAYLTEKWQVNIGSGDFL
                     YLASLALICGFTELLWIIQISSLLGLLVFTIFKPKSIPYVPLLFLSSIPIILCI"
     gene            complement(4521..5339)
                     /locus_tag="U1087_001312"
     CDS             complement(4521..5339)
                     /locus_tag="U1087_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEM4755787.1"
                     /translation="MSSSKNTFIAFLLNLSFSIIEFIFGWLFGSSAILADAVHDLGDA
                     LAIGSSAIMQTYANKPADRFYPFGYKRWNILAALLTSSILIIGSSLILVENLPNLFHP
                     QPVNQDGMLVLGIIAVIINFLASRIVKNGYSHTESILSLHFLEDILGWLAVILVSIIL
                     QFTDWYFLDPLLSFCIAIFILSKALPKVWNNIKILLETSPQGVNLEEVKGVLLALENV
                     HEITQLNVWTMDGYEHCATVTVKLTNPALADKTKAKIRNSLITFGIIQSTIEIL"
     gene            5461..5979
                     /locus_tag="U1087_001313"
     CDS             5461..5979
                     /locus_tag="U1087_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM4755788.1"
                     /translation="MDRRIAKTKRAIFQAFLTLLNDKGYDHMRVQDVIDLADVGRSTF
                     YAHYASKEVLLEELCHDLFHHLFTDREDADVKTLLVHIFKHFRTNQDRVASLLLSRNA
                     YFLRELEAELKHDIFPKVAEDYMQDKRNLPEDLLVHFVVTTFVETVSWWLQQRKKVDE
                     ATLTDYYIRLLA"
     gene            5989..6543
                     /locus_tag="U1087_001314"
     CDS             5989..6543
                     /locus_tag="U1087_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM4755789.1"
                     /translation="MLRPLHMAHAFLDEILTDQDLAVDATMGNGHDTLFLAQRAGKVV
                     AFDIQEQALTTTAEKLEKAGLTNAQLVLTGHENLDQYVEECKAAIFNLGYLPSADKSV
                     ITLPATTLQAIEKVLDRLVVGGRLAIMVYYGHEGGALEKDAVLDFISQLDQTVFTAML
                     YKPLNQVNTPPFLVMVERLKSSSN"
     gene            complement(6559..7338)
                     /locus_tag="U1087_001315"
     CDS             complement(6559..7338)
                     /locus_tag="U1087_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4755790.1"
                     /translation="MIISMKNVHYKRQGKTILEDINWEFKQGERWAILGLNGAGKSTL
                     LRILMAEFWKTSGDLTVLGVEFGKGDIPSLRTKIGVVGSFLAERFPIDLTAEQIVLTG
                     KYKSSILYREYGQAELDEAIDMLKTIKADHLIGRTYASLSQGERQLLLIARSLMEEPA
                     ILILDEATVGLDLLARERLLHHIDHICQLPTAPAIIYVTHHAEEITDNFTHVLLLKDG
                     KVLAQGAKQDILTPELLSDFYGNQVELIDLGEGRLFIKPIL"
     gene            7471..8808
                     /locus_tag="U1087_001316"
     CDS             7471..8808
                     /locus_tag="U1087_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HEM4755791.1"
                     /translation="MEDPGSQTIYLQLLILFLLTLFNAFFSASEMALVSLNRSRVEQK
                     AADGEKKYIRLLQVLENPNNFLSTIQVGITFISILSGASLANDLGAVFSKWMGNSTTA
                     QTAGYWLALAMLTFVSIVLGELYPKRIAMNMKENLAVVTAPVIIFLGKIVSPFVWLLS
                     AATNLISRITPMNFDDADEQMTRDEIEYILTKSEKTLDAEEIEMLQGVFSLDELMARE
                     VMVPRTDAFMVDIEDDTATIMAAILKQNFSRIPVYDGDKDNIIGLIHTKKILSEAFSN
                     GFDNLNIRRIMQEPLFVPETIFVDDLLTSLRNTQNQMAILLDEYGGVAGLVTLEDLLE
                     EIVGEIDDETDKTEIFVREIADNTYIVQGNMTLNDFNEHFEMELESDNVDTIAGYYLT
                     GVGTIPSQDEKVSFEVDSKDHHLVLINDKVKNGRVTKLKLLITPLEKEETDKD"
     gene            8925..9716
                     /gene="pflA"
                     /locus_tag="U1087_001317"
     CDS             8925..9716
                     /gene="pflA"
                     /locus_tag="U1087_001317"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase-activating protein"
                     /protein_id="HEM4755792.1"
                     /translation="MMTEIDYRKVTGLVHSTESFGSVDGPGVRFVVFMQGCHMRCQYC
                     HNPDTWDLVNPAAIERTAEDVLNEALRFRMFWGKEGGITVSGGEATIQIAFLIALFTL
                     AKEKGIHTTLDTCALTFRKTERYLEKYSRLMEVTDLVLLDIKEMNPEQHRIVTGHSNK
                     TILECAQYLSDIGKPVWIRHVLVPNLTDRDEDLIELGKFVKTLKNVERFEVLPYHNLG
                     EFKWRELGRPYPLEGTKPPTKARVENAKALMETETYQEYLNRIKG"
     gene            9763..10845
                     /locus_tag="U1087_001318"
     CDS             9763..10845
                     /locus_tag="U1087_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-hexosaminidase"
                     /protein_id="HEM4755793.1"
                     /translation="MLGLFFLGNRTQKEQTKVATTSSSQEISARDKVIANYLNQMTLE
                     EKVGQMIFARMPSAGQTEALETYHFGGYILFASDFEGKTLEQVKEEIASYQSLSKVPL
                     LMASDEEGGTVTRISQLLETPFASPLELYQSGGIKAILSDAKQKTGLLKEEGIYAGFF
                     PVADLFTDPSSFIYDRTIGQDAKTTANYIGQLVSLLKEEQFASTLKHFPGYGDNADSH
                     TDLVYDNRSLEELRANDFLPFKAGIEAEADSIMVSHNIVPAIDDVPSSISPEINKILR
                     NELGFEGVIMTDDFDMQGLVQFVDQDTGALQTIQAGTDMILSSSYASQIPYIIEQVKA
                     GTITEGRIDQSVKRILGMKYDLGLIK"
BASE COUNT         3121 a         2032 c         2591 g         3106 t
ORIGIN      
        1 tttctagtcg aatccataag tgaggtggca ccgtgtcatt gacgccctcg caggttgttt
       61 tttcctgcgg gggcttttcc atttgtcttg tagatatagc gagggattca gtatgaagcg
      121 atggcgtagc aaatagtaaa gaataataga taatggtaag aaaaaatctc agaatgtatt
      181 taaaagaaaa agggaattat atgacagaaa aaggttattt tggacagttt ggtggtagtt
      241 ttgtaccaga gcaaattcag gttttgttgg atcagttgga ggagacattt gaacagtacc
      301 gcaatgattc agaatttttg gcggaatacc aagcttatct gaaagattat gctggtcgtg
      361 aaacgccatt atattttgcg gaatcattga gcaaggagct tggtggagcg aaaatctatc
      421 tcaaacggga agatttgaat cacttaggct ctcataagtt aaacaatgtg ctggggcaaa
      481 ttctgttggc aaaaagaatg gggaaaactc gagtgattgc agaaactggt gctggtcaac
      541 atggggttgc gactgctgct gttgcggcac gatttggttt gggatgtgat gtctatatgg
      601 gggcagaaga tgtcaaacgc caacggctaa atgttttccg aatggagatg atgggggcgc
      661 gtgttcatgc tgtaacagaa ggaacgcaaa ccttgaaaga agcagttgat gcggcattcg
      721 gtgcatggat ggctgatttg gatgccttct atgttttggg ctctgcagtc ggtcctcatc
      781 cctatccaac cattgtccat gagtttcaaa agattattag tctagaatct cggcgtcaaa
      841 ttctggaaaa agaaggtcgt ttgccagact acgttattgc ctgtgtgggt ggcggttcca
      901 atgccatcgg tgcattttct caatatttac cagatgagtc agtcaagctt atcggtgtag
      961 aagctgctgg taaaggagtt gatacagaac tgcatgcggc gactatgact aagggaacag
     1021 ttggtgttgt tgatgggatg aagacaatct ccctttttga tgaaaatggt ggagtagcac
     1081 ctgtttattc catttcagca ggcttggatt atccaggtgt tggcccagaa catgcccact
     1141 ataaggaaac tggtcgtgtt aattatgtcg cagcaacaga tgatgaggct gttaatgccc
     1201 ttttgacctt aagtcgtaca gaaggaattc ttccagccat tgaatcttct catgcgattg
     1261 cagaagctat tcgattagca ccacaactag ataaagataa aatcattatt atcaatgtat
     1321 ctggtcgagg agacaaggat gtcgcagcga ttgcggatta tttggagagt agataaaaga
     1381 aatcccctga cggttgctta tcgtcagggg ttatttgtta tttccaaaag tcatcaaaaa
     1441 tcgtgattgg caggtggcgt ttgtgagcag ttttgttcca ccatccttcg ataatggttt
     1501 gggcttgagg atcgatgatt ttgccttcga gatagtcgtc gatttggtta taggtaacac
     1561 cgagagcgac ttcatcagcc agacctggct tgtcttcttc caagtccgca gtaggaactt
     1621 tgaggtagag tttttcatct gcccccagtt cagctagaag ctgttttcct tggcgtttgt
     1681 tgaggcggaa gaggggcaga atatctgcac caccatcacc gtgcttggta aagaaaccgg
     1741 taatattttc agctgcatga tcggttccga taaccgcccc cttgcgttcc ccagcgatag
     1801 cgtattgggc aatcatgcgc atgcgggctt tagcatttcc cttattaaaa tcagacatag
     1861 caagcccatt ggcattgact gcagccacca tggcatctgt tgattccttg atgttgatgg
     1921 ttaagctgac atctggttga ataaaggcta gggctgcttg ggcgtcggac tcgtcagcct
     1981 gtacaccgta aggtaggcgg atagcgataa attggtagga gtcgtcacct gtttccgctc
     2041 gcatttcttc catggtcaac tgagccaaac gaccagccaa ggtcgagtct tgtccacccg
     2101 aaattcccaa gacataggtt ttcaaaaatg ggtgtttttt caggtagtct ttgagaaagt
     2161 cgatggagcg acggatttct tcttcggggt caatgcttgg cttgacacct agttccttga
     2221 taatggtttc ttgtagggtc ataacatacc tttcttagat ggatttggtc tgagtttgtt
     2281 tgcgaatacg attgatgagg ttcatcttat tatcccaaac atcttgtgcc aagtcgactg
     2341 gatagagctg tgggttgagc acgcgtttgt attcatccca gagtttatca aattcttgat
     2401 tggcataggt ttgaatttcc gctaggcttg gaagttcata gacctgtttt cctttttcga
     2461 aaataggaac taggagagga cgggcatcaa agttctcgat ggttttattg atgtaggtgt
     2521 aagttggatg gaacatatag atactatcca tctgtgtgac atcagtgtcc gcaaaggtga
     2581 tgtagtcccc ttctgatttt cctttttctt tggaggtgat gcgccaaacc tgtttcttac
     2641 caggagtgga gactttttcc gcattagaag acagcttgat ggtgtcacgc atatttccat
     2701 cttcatcttc gatggataca atcttgtaga cagcgcccaa ggcaggttgg tcgtaggcgg
     2761 tgatgagttt ggtaccaact ccccagacat caatttttgc cttttgcatt ttgaggttga
     2821 ggatggtatt ttcatccagg tcattagatg cgtaaatctt cgcatctgta aaacctgcat
     2881 catctaattg ttgacgaact ttcttggaaa tataggccat atcgcctgaa tcaatccgaa
     2941 cccctttgaa gttaatctta tctcccattt ctttggcaac cttgatggct gctggaacac
     3001 caatacgaag cgtgtcatag gtatcaacga ggaagacaca gtcatgatgg gtttcagcgt
     3061 aggctttgaa agccttgtaa tcatctccgt atgtttgaac caaggcgtgg gcatgggtac
     3121 cagcgacagg gatgccgaag attttgccag ctcgaacatt ggaagtcgca gatgctccac
     3181 caataaatgc tgcccgtgta ccccagatag cagcatccat ttcttgggca cggcgagtgc
     3241 caaattccat caagggctca tcttcaatga cagccttgat acggcgagct tttgtggcaa
     3301 tcagggtttg gtagttgacg atgtttaaga gggcagtttc gattagttgg cattgtgcca
     3361 atggtccttc gatttgaaga ataggttcgt tagcgtagac taggtcgccc tccttagccg
     3421 aacggacagt gagagtcatc tccaattggg acaagtaatc aaggaaatcc tgcggataac
     3481 ctagttctgt cagatagtca atgtctgtct ggctaaagct gagattgttg aggtagttta
     3541 caacgcgttc caaaccggca aatacagcgt agccattttt aaaaggttgt gaacggaaat
     3601 agacttcgaa tacagcgtgt ttattgtgga tgttttggtc aaaatagacc tgcatcatgt
     3661 tgatttgata aaggtcggta tgcagggtta aactgtcatc cttaaatagt gtcataacgt
     3721 ttctcctttt gccttccgat caagaaggca ctccaattat tttgatggag ttgaactcta
     3781 atatgccttc tattataaca aaaaaatcga gaaaaactcg atttagatgc acagaatgat
     3841 aggaatactt gaaagaaaaa ggagtggtac gtagggaata gacttgggtt tgaaaatagt
     3901 gaagacaaga agccctagga gggaactaat ctggataatc cagaggagtt ctgtaaatcc
     3961 acatattaag gccaaacttg ccagatagag aaagtcacca gaaccaatat tgacttgcca
     4021 tttttcagtc agataggcta agagtaaaaa ggcacagaaa agccagttga gctgggagag
     4081 taccagagct ataaaagtaa aaacgagcca gacagcaaaa ggatattcct gatgtttgat
     4141 gtcgtaaatg gtcaaaacta gtcctgccaa gatgagaatg gtttcggtta ggtttaggac
     4201 ttgaaaatgg cagagcagga caactagacc agctaagaat tccaatccca gataccaata
     4261 aggtatcttc gccttgcagt aacggcattt ggattttgtc gaaagttggg ataggattgg
     4321 aattaggtcc caggctttga gccgtcgctt gcaggcattg cagtgactag agggggagat
     4381 aatggactgt tcagggaaac ggtcgatgac caatcccaag aaggagccga ttgaagctcc
     4441 aaggaaaaat aggataattg tcttcatacc tatttattcg caaatgggtg gaggaaaatg
     4501 agatattttt aaaaaatttt ttacaaaatt tcgatggtac tctggataat gccaaaggtg
     4561 ataagagaat tccgtatttt tgctttggtc ttgtctgcta aagcaggatt tgtcagtttg
     4621 accgtcacag tcgcacaatg ttcatatcca tccatggtcc agacatttag ctgagtgatt
     4681 tcgtgaacat tttcaagagc cagaaggact cctttaactt cttcaagatt tactccttgc
     4741 ggacttgttt caagcaatat ctttatattg ttccaaactt ttggcagggc tttggagagg
     4801 atgaagatag caatacagaa cgagagaagt gggtctagaa agtaccaatc agtaaattga
     4861 agaatgatgg aaacaaggat gaccgccagc catcccaaaa tatcctctaa aaagtgcaag
     4921 ctgagaatgg attcagtatg gctatagcca ttttttacaa tacgggaagc aaggaaattg
     4981 atgatgacag cgataatccc aagtaccagc atcccatctt gattgacagg ctggggatgg
     5041 aagagattgg gaaggttttc cacaaggatc aagctggagc cgataatcag aatgctagaa
     5101 gtcaagagag cggccaaaat attccatctc ttgtagccaa aaggataaaa cctatcagca
     5161 ggcttgttgg cataggtttg catgatggca gagcttccga tggcgagggc gtcacccaaa
     5221 tcatgaacag catctgctaa gatggcgctg gaaccaaaga gccagccaaa gataaactct
     5281 atgatagaaa agctgagatt gaggagaaaa gcgataaatg tatttttaga agatgacatg
     5341 agattccctt tctgtgttat actgtttata ggtttattat gcactgtaat gagccgaaaa
     5401 actagaaaca agagaaacgg tttgtctttt tctgaacaaa ttgtttgaaa tgtacgaaaa
     5461 atggatagac gaattgcaaa aacaaaaaga gctatttttc aagctttttt gaccttatta
     5521 aatgataagg gctatgacca tatgcgcgtg caggatgtca ttgacctggc agatgtgggg
     5581 cgttccactt tctatgccca ctatgccagc aaggaagtac tgttagaaga gctttgtcat
     5641 gacctctttc atcatttatt tacagatcgt gaagatgcgg atgtgaagac cttgttggtt
     5701 catattttca aacactttcg gaccaatcaa gatcgtgttg ccagcctttt gttgtcccgc
     5761 aatgcctatt ttctaagaga actggaagcg gagttgaaac acgacatttt tccaaaagtg
     5821 gctgaagatt acatgcagga taagagaaat cttccagagg atttgctggt gcattttgtc
     5881 gtgacgactt ttgtggagac ggtcagctgg tggctccagc aacgcaaaaa ggtggacgaa
     5941 gccaccttga ccgattatta tataagatta ttagcataag gagagaaaat gcttagacct
     6001 ttacacatgg ctcatgcctt tttagatgag atattaacag atcaggacct agcggtcgat
     6061 gcgactatgg gaaatgggca tgacacgcta tttttagccc agcgagcagg aaaagtggtg
     6121 gcctttgata ttcaggaaca agccctgacc acaacggctg aaaaactaga aaaagctggc
     6181 ttgaccaatg cccaattggt tttgacagga cacgaaaacc tagaccagta tgtggaggag
     6241 tgcaaggcag ccattttcaa tctgggctat cttccttcgg cggataagtc agtcatcacc
     6301 ctgcctgcaa ccacccttca agctattgaa aaagttcttg accgactggt ggtgggtggt
     6361 cgcctagcca tcatggttta ctatggtcac gagggcggag ctcttgagaa ggatgcagtc
     6421 ttagacttta tcagccagct agaccagact gtctttaccg ccatgctcta caaaccgctc
     6481 aaccaagtca ataccccacc atttttggtg atggtggaga gattaaaatc cagctcaaac
     6541 tagggctgga tttgtttttt ataatatcgg cttaatgaac aatcttccct cacccaagtc
     6601 aatcaattcc acctgattgc cataaaaatc gctgaggagt tcaggtgtca ggatatcttg
     6661 ttttgctccc tgtgccaaga ctttcccatc tttgagcagg aggacatggg tgaaattgtc
     6721 agtgatttct tcagcgtgat gggtgacgta gataatggca ggagctgttg ggagctggca
     6781 gatgtggtcg atgtggtgga gtaagcgttc gcgtgccaaa aggtccaagc ctacagtagc
     6841 ttcgtctaaa atcaaaatag ccggctcttc catcaaactt cgggcgatca gcaggagttg
     6901 gcgttctcct tgtgacaaac tagcataggt acgaccaatc aagtgatcag ccttgatggt
     6961 tttgagcatg tctatggctt catccaattc agcttgaccg tattcacgat agaggatgga
     7021 ggatttgtac tttccggtca ggacaatctg ctcagctgtt aaatcaatgg gaaagcgttc
     7081 ggcaaggaaa gaaccaacga ccccaatctt agtgcgtagg ctaggaatat ctcccttacc
     7141 aaactccact ccaagaacag tcaggtcacc agaggtcttc caaaactcag ccattaaaat
     7201 acgaaggagg gttgactttc cagctccatt tagccctaaa atagcccaac gctctccttg
     7261 tttaaattcc cagttgatgt cttctaaaat agttttacct tgtcgtttat agtggacatt
     7321 cttcatcgaa ataatcatag ttgctctcct attccttttg attattgtaa cataaacaga
     7381 catgagggac taattataac aagaaatatg ttaaatttta gaatttgtgg tataatggga
     7441 atgttataaa ttttattata ggagaacatc atggaagacc ctggtagtca gaccatctat
     7501 ttacaactgt taattttatt cttattgact ctgttcaatg ccttcttttc agcctctgaa
     7561 atggcgcttg tttctctaaa tcgttcaaga gtagaacaaa aggccgcaga cggtgagaag
     7621 aaatacattc gcttgcttca agttttagag aatcctaaca attttctatc aaccattcag
     7681 gtcggtatta ccttcatctc catcctttca ggtgccagct tggctaatga tttgggagct
     7741 gtattttcca aatggatggg gaattcaaca acagcgcaaa ccgcaggata ctggcttgca
     7801 ctggctatgt tgacctttgt ttcaatcgtt cttggcgaat tgtaccctaa gcggattgcc
     7861 atgaatatga aggaaaatct ggcagtagtc actgcaccag tgattatttt ccttggaaaa
     7921 attgttagtc cgttcgtgtg gttattatca gctgcaacga atcttatcag ccgtattact
     7981 cctatgaatt ttgatgatgc ggatgagcaa atgacacggg atgaaattga atatattttg
     8041 acaaagagtg agaaaacctt agatgccgaa gaaatcgaaa tgcttcaagg tgtgttctct
     8101 ttagatgagc tgatggcacg tgaagtaatg gttcctcgta cggatgcttt catggtggat
     8161 attgaggatg atacagcaac catcatggca gctatcctca agcagaattt ttcacgtatc
     8221 cctgtttatg atggtgataa ggacaatatc attggtctga ttcataccaa gaaaatcttg
     8281 tcagaagctt tcagtaatgg ctttgataat ctcaacatcc gccgcattat gcaggagcct
     8341 ctcttcgttc ctgaaacgat tttcgtggat gatttgttga catcgttgag aaatacccaa
     8401 aatcaaatgg ccatcttgtt agatgagtat ggtggagttg caggtctcgt taccttggaa
     8461 gatttgctgg aagaaattgt cggtgaaatt gatgacgaaa cggacaagac agaaattttt
     8521 gtccgagaaa ttgctgacaa cacctatatc gtccaaggaa atatgacctt aaatgacttc
     8581 aatgagcatt ttgagatgga gttggaaagt gataacgttg atacgattgc tggttattat
     8641 ctgacaggag tcggtaccat tccgagccaa gacgagaaag tttcctttga agtggatagt
     8701 aaagatcacc acctggttct tattaacgat aaggtaaaaa atggtcgtgt aacaaaatta
     8761 aaactcttga ttacaccact ggagaaagaa gaaaccgata aggactaggg caacctagtc
     8821 ttttagcttt tttcttaagg aagatgatag ttatgaaaga aagtaaatga tagaagcgtt
     8881 ttcatttttg tgatatacta gtcttataaa atgatgagga tgagatgatg acagaaattg
     8941 attatcgtaa agtgacaggt ttggttcatt caacagagag ttttggttcg gttgatggcc
     9001 caggggtacg ttttgtagtc tttatgcagg gctgtcacat gcgttgccag tattgccata
     9061 acccagatac ttgggatctg gtcaatccag cagcgattga gagaacggca gaagatgtct
     9121 tgaatgaagc cctgcgtttt cgtatgtttt ggggaaaaga aggggggatt accgtttcag
     9181 gtggtgaagc aaccatccag attgcttttt taattgcttt gtttaccctt gcaaaagaaa
     9241 aagggattca cactactttg gatacctgtg cgttgacttt ccgtaagaca gagcgttact
     9301 tggaaaaata tagtcggctt atggaagtaa cagatttggt gctccttgat attaaggaaa
     9361 tgaatcctga gcaacaccgc attgtgactg gtcatagtaa caagactatt ttagaatgtg
     9421 ctcaatatct atcagacatt ggtaagcctg tttggattcg tcatgtcctg gtaccgaatt
     9481 tgactgaccg agatgaggac ttgattgaac ttggtaagtt tgttaaaaca ttaaaaaatg
     9541 tcgaacgttt tgaggtgtta ccttatcaca atcttggtga atttaagtgg cgtgagttgg
     9601 gcagacccta tccactagag gggaccaagc ccccaacgaa ggctcgagtg gaaaatgcaa
     9661 aggccttgat ggagacagag acctatcagg agtacttgaa tagaattaag ggataatagt
     9721 gagaggtctg agattgctgc gaaaaagatt taaattggac ttatgctagg cttgttcttt
     9781 ttgggaaatc gaacacaaaa ggagcaaacc aaagttgcaa cgacatcatc tagccaagaa
     9841 atatctgcta gggacaaagt gattgcaaat tatctaaatc agatgacctt agaagaaaag
     9901 gtcggacaga tgatctttgc tcgaatgcca tctgcaggac aaactgaggc attggaaacc
     9961 tatcattttg ggggctatat cttatttgca agtgattttg aaggtaagac actggagcag
    10021 gttaaagaag agattgcttc ttatcaatca ctttcaaaag taccgctatt aatggcttca
    10081 gatgaggaag gtgggacagt aactcggatt agtcaacttc tggaaacacc ttttgcatcg
    10141 cctttggaat tgtaccaatc tggcggcatt aaagcgattt tgtcggacgc caagcagaag
    10201 accggtcttt taaaggaaga gggaatctat gcaggcttct tcccagttgc ggatttattc
    10261 accgatccat catcttttat ctacgatagg accattggac aggatgcgaa aaccaccgca
    10321 aactatattg gtcaattggt ttcattgttg aaagaggaac aatttgcttc gaccttgaaa
    10381 catttcccgg gttatgggga caatgcagat tcgcatacgg atttggtcta tgacaatcgt
    10441 agtttagaag aattacgggc taatgatttt ctccccttta aggctggtat tgaagcagaa
    10501 gctgactcca ttatggtcag tcacaatatc gtacctgcca ttgatgatgt cccatcatcc
    10561 atttcacctg aaatcaataa aatccttcgg aatgagcttg gttttgaagg tgtcataatg
    10621 acggatgatt ttgatatgca gggcttggtc caatttgtag atcaagatac aggtgcattg
    10681 cagaccattc aagctgggac agatatgatt ttatcttcaa gttatgccag tcaaattcct
    10741 tatattatcg aacaagtaaa ggctggaact ataacagagg ggcgaattga ccaatccgtc
    10801 aaacggattt tgggaatgaa atatgatctt ggcttaatca aataaataaa
//
LOCUS       DASFRC010000077        10802 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.077, whole genome shotgun sequence.
ACCESSION   DASFRC010000077 DASFRC010000000
VERSION     DASFRC010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10802)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10802)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10802
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.077"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            371..1657
                     /locus_tag="U1087_001319"
     CDS             371..1657
                     /locus_tag="U1087_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 125 protein"
                     /protein_id="HEM4755794.1"
                     /translation="MFYTKEIIENWLTGIQKKTADHPSWGSVFERCYTDTLDRTISQL
                     EDGTTFVLTGDIPAMWLRDSTAQVKPYLALAGKDETLLQMIVGLVERQMAFILMDPYA
                     NAFNQAANGRGHQTDHTQMGPWIWERKYEVDSLCYPLQLAYLLWKATGETSHFNQTFF
                     GAAEKIVQLWKLEQHHENSPYSFERDTDRLEDTLTHQGKGAPCTYTGMTWSGFRPSDD
                     ACIYPYLIPSNMFAVVVLGYLGEIAEQFASEEFSDLAEGARQLAQEIDQGIRTFGLTK
                     NQAGETIFAYEVDGLGNQSIMDDPNVPSLLAAPYLGYCQKDDPIYLATRRTILSQENP
                     YYYEGDYAAGLGSSHTFYRYIWPIALAIQGLTMDDKEEKARLLDTMVACDGGTGLMHE
                     SFHVDDPTLYSREWFSWANMMFCELVLDYYDIRPEE"
     gene            1659..4331
                     /locus_tag="U1087_001320"
     CDS             1659..4331
                     /locus_tag="U1087_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HEM4755795.1"
                     /translation="MGKETVHIISHSHWDREWYLPLEEHRMRLVELFDDLFDLFETDP
                     EFRSFHLDGQTIVLDDYLEIRPQNRELLKKYIQDGRLIIGPFYILQDDYLITSEANMR
                     NTLLGHLESKKWGRAPKIGYYPDTFGNMGQAPQLLRQAGIDVALFGRGVKPVGFDNQV
                     LGDDQFQSTFSEMIWEGADGSQVLGILFANWYSNGNEIPVDEEEARVFWEKKLADVRK
                     YASTSHYLLMNGCDHQPVQKNLSQALRLARKLYPDIDFVHSSFEEYIAAVKEELPEDL
                     SCVKGELTSQETDGWYTLANTASSRIYLKQANDQASQLLEQVVEPLVVMTGDKVPRDE
                     LRYAWKLLLQNAPHDSICGCSVDQVHSEMETRFKKVKQVAHFLSQRSLDRWEKQVDSS
                     QLDGLLFTVFNTTACRQTQLVEVDLLVEQEDFRDGQLDQHFQSMAAISLPALGLFTSQ
                     GQEVEVTIEDLGVNFRYDLPKDAFRSANFARQIRVRFVVENQAPFSWQTYQVKPIGDT
                     RVNSSLSEQFENDYYRIDVVDGQLLLEDKRTGQAYKDWLRFEDYGDLGNEYIFMAPKN
                     DQPIYGQIEDFGLVYQTEAVSIAKVVHRLHLPVAMETSLEDEQKRLVEFKHRTSQRSQ
                     EKKDLLLTTYLTLYRHQPQIRIQTDFHNQIKDHRLRAVFDIGIEAENHLADSIFEVVE
                     RPNQPHPAWENPSNPQRHRSFICLSDDRQAMTVSSKGLHEYEILDRGKIALTLLRATG
                     ELGDWGYFPTPEAQCLRECQLDYAFEICPVEEGFASFQRAQAFQGHLLTKQLTSHSGH
                     LPCNHQFLSHPALEEDRLCVTSLKVAETSDRILLRYYNMSQEQLAGWSEWTEGVDLLE
                     EPLEDLPDRIGSQAIRTEVIGYLEKEKEYGSSLF"
     gene            4312..5178
                     /locus_tag="U1087_001321"
     CDS             4312..5178
                     /locus_tag="U1087_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEM4755796.1"
                     /translation="MVVACFDIGGTGIKAGLIGSDKQINYRQEWKTPSSLEELLGLMD
                     SVIQPVNGLEAISLSIPGAVDLETGVIQGLSAVPYIHGVSWYELLSQYGCPVYLENDA
                     NCVGLSELAVDDQLSTFACVVCGTGIGGALIVDRKLIRGKQGFGGEFGYMLIATGKGP
                     LKNWSQLASTGSLVRQVASQYEEAVEDWNGKRIFELAEQGDEVCLLAIEEMTRNLAYG
                     ILNISYFLEPEVLAIGGSISQNPVFIQAIQEQLGAIQKEYPEEFPYLPAIRACHYQQD
                     ANLMGAYMKTLQ"
     gene            5191..7071
                     /locus_tag="U1087_001322"
     CDS             5191..7071
                     /locus_tag="U1087_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HEM4755797.1"
                     /translation="MLQINHSLQQSEGVLEEICSGLGLDCQLELEVDGKENLRIEGSA
                     DSYRIRAPKEYMIYRGLLVLASQLSQGETDIQILERPAYRQLGFMEDCSRNAVLTVEA
                     SKILIRQLALMGYSHFQLYMEDTYQLRDEPYFGYFRGAYTKEELQAIEEECHRYGMEF
                     IPCIQTLAHLIAYLKWNISSIQAIRDVDNILLIGDERTYALIDKMFEALSHLKTRTIN
                     IGMDEAHLVGLGQYLNQHGYQKRSLIMCQHLERVLDIADKYGFHCSMWSDMFFQLLTA
                     SKDYTGQLEIDSEIQAYLDRLKDRVTLIYWDYYQTSRESYGQKLASHQQLGEQIAFAS
                     GAWKWIGFTPDNDFSMRIAPEAHAACQEYGVQEVTVTAWGDNGGECATFSILPSLHAW
                     AELQYRGNLGCLAEHFYQLHQVSLDDFLQLDLPNKTPSHPGPGHHGFNPSRYILYQDI
                     LCPLLQEHIDAEKDSAFYQELAPRLAEIGSRAKGYAYLFDTQAKLCQVLATKAAISVG
                     IRQAYQEGNRQVLAEQVDGLQQLRIDLESFYQALSYQWMVEKKVFGLDTVDIRLGGLD
                     ARIRRAIQRLQAYLNNEVPKLDELEVPILPYDDFHQDKGFIATTANQWQIIATASTIY
                     TT"
     gene            7273..8202
                     /locus_tag="U1087_001323"
     CDS             7273..8202
                     /locus_tag="U1087_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM4755798.1"
                     /translation="MKDLIKNLKQNAIFFLMVLPGVIWLILFFYIPVFGNVIAFKDYR
                     HTGNGFWDSLIQSKWIGLDNFKFLFQSSDAYIITRNTILYNLGFIVLGLIFAVGIAII
                     FSEMRSKKLVKIYQTTTLFPYFLSWVIISFFVYAFLSPDKGLINNILKGMGMDPINWY
                     STPTYWPFILLFLGIWKGLGYNSIIYYATIMGIDPTYYEAAIVDGATKWQRIRYVTLP
                     QLMPLMTILTILAVGNIFRADFGLFYQIPKNSGPLFNVTQVLDTYVYRGIAGTGDIGM
                     AIAAGLYQSVVGCILVVVTNLIVRRFDKESALF"
     gene            8212..9135
                     /locus_tag="U1087_001324"
     CDS             8212..9135
                     /locus_tag="U1087_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001075101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM4755799.1"
                     /translation="MKKKKQITSVSIHSFSKKTDLFFSSLLGIFALSCTLPFIFVIII
                     SMTDETSLAINGYSFWPEQWSLAGYEYLFQLKDQILQALFITFFVTIVGTSLNVFFTV
                     LYAYAISRNSFRYRRFFTLMALFTMLFSAGTIPTYIVMTSFLNLKDTVAALILPMLLS
                     PFNIMVMRSFFRKTISESIIESARIDGASEFRIFFQICLPLTLPGIATIALFTALAFW
                     NDWYNALLYIQSDNLFPLQYLLMKIQANIQYLSENAAAAAAMSSEVAGALPKEATRMA
                     IVVVSTLPIACLYPFFQRYFVKGLTIGGVKE"
     gene            9205..10686
                     /locus_tag="U1087_001325"
     CDS             9205..10686
                     /locus_tag="U1087_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM4755800.1"
                     /translation="MKTWKKFAYSCVTLASAAALAACGSLTGNKTASSSATTEDGLTN
                     ILMYQIGDAPKNIDVLLENANKIIEKEAGAHLDIKYISWGDYKDKMAIITSSGEEYDI
                     AFADNYIINAQKGAYADLTELYKKEGKALYDIIDPAYIKGNTIDGKIYAVPVIGNVAS
                     QQMLSFNQDMVDKYGFDISKVDSYDDVESMLATIKEKEADVTPFAWVKSSKPSTDGLE
                     YPAGNELPFAIDLKGDTTKVVNPFEVDRHMDNLRTIHKYYKAGYIMADAATTDATFSL
                     DVANWFVREETQGPADIGDSLLSTVAGYKITSKPITSAYKTSGSTQVANFVISKTSKN
                     KEKAMEVLTLINTNPELLNGLVFGPEGVNWEKDPSAENRIKLLDGYKGDTRMSAWNTG
                     NSQILYITDKVTDEDVKKAEELLAGAEESPLLGFNFNADAVKTEITSIQNIMSQYAAS
                     INTGTVDPDVAVPEMLKKLEAEESYKKVKEEMQKQYDEFLANK"
BASE COUNT         3071 a         2230 c         2521 g         2980 t
ORIGIN      
        1 tttccaactt caaacactcc acgggattgt ttgaactctc cttacctaac tctagttatg
       61 cctgcggctt ttgatgtgaa catcgttcac tttatcccca atctccaact atctcccaga
      121 tagttggagc gagtactaaa agactatatt gataataagt ggtgtctcct tattatatag
      181 agaaagggaa agaaaggaaa gcgttttcta aaactggcaa tatttgtgta aaaatgcgtt
      241 taatttgtgt ataggatttg catttggaat tgtatagact gatactagga accttgtgtc
      301 taatgaaaac tacatggatt tgccagatag aggttggaag aactctgagc aaggataaaa
      361 aggagaaatc atgttttaca caaaagaaat catagagaac tggctgacag gcattcaaaa
      421 gaaaacagca gaccacccaa gttgggggag tgtatttgaa aggtgttata cggatacgct
      481 tgataggacc attagtcaac tggaggatgg gactactttt gtcttaacag gggacattcc
      541 agccatgtgg ttgagagact ctacagccca ggtcaaaccc tatctagccc tagcaggcaa
      601 agatgagaca ttgctccaga tgattgtagg tctggtagag aggcaaatgg cctttatttt
      661 gatggatcca tatgccaatg cctttaatca ggcagctaat gggcgggggc accagaccga
      721 ccacactcag atgggaccct ggatttggga gcggaaatat gaggtggatt ccctctgcta
      781 cccccttcaa ttagcctatc tactttggaa agcgacaggg gaaaccagtc attttaacca
      841 gaccttcttt ggggcagctg aaaaaattgt tcaactctgg aaattggagc agcaccatga
      901 aaactcccct tatagctttg aacgggatac tgaccggcta gaggataccc ttacgcacca
      961 aggaaaaggg gctccctgca cctatacagg gatgacttgg tctggttttc gtccaagcga
     1021 tgacgcctgc atctaccctt acctcatccc ctcaaacatg tttgcggtcg tcgtcttggg
     1081 ttatttagga gaaatagcgg agcagtttgc cagtgaggaa ttctcagatt tggctgaagg
     1141 tgccagacag ttggcgcagg aaattgacca ggggattcgg actttcgggc tgaccaagaa
     1201 tcaggcggga gaaactattt ttgcctatga agtggacgga ttgggcaatc agtctatcat
     1261 ggatgacccc aatgtcccaa gtttgctagc ggctccctat ctaggctatt gtcagaaaga
     1321 tgatcccatc tatttggcaa cccgtcggac tattttaagt caagaaaatc cctattacta
     1381 cgagggtgac tatgctgctg gtcttggttc cagtcatacc ttctatcgct atatctggcc
     1441 gattgccttg gctattcaag gcttgacaat ggatgacaag gaagaaaaag cgcgcttgct
     1501 ggataccatg gtagcctgtg atggcggtac tgggctgatg catgagagtt tccatgtgga
     1561 tgatccgacg ctttactcca gagagtggtt ctcctgggca aatatgatgt tttgcgaatt
     1621 ggttttagat tattatgata tacgaccgga ggaataaaat gggaaaagaa acggttcata
     1681 ttatttcaca tagccactgg gatagggaat ggtatcttcc tttggaagaa catcggatgc
     1741 gcttagtaga gctatttgat gacctatttg acttatttga aacagatcct gagtttagga
     1801 gttttcatct agatgggcag accattgtcc tagatgacta tctggaaatt cgtccgcaga
     1861 atcgagagtt attgaagaaa tacattcaag acggtcggct gattattggt cccttttaca
     1921 tcttgcagga tgattacctc atcaccagcg aggccaatat gcgcaatacc cttctgggtc
     1981 acttggaaag caagaagtgg gggcgggctc cgaagattgg ctattatcca gatactttcg
     2041 gcaatatggg acaggctcct cagctactgc gtcaggctgg tatagatgtg gccttgtttg
     2101 gtcgaggggt caaaccagtt ggctttgata atcaggttct gggagatgac caattccagt
     2161 ccactttctc ggagatgatt tgggaggggg cagatggcag tcaggttctg ggcattttat
     2221 ttgctaactg gtacagcaat ggcaatgaaa ttccagttga tgaggaagaa gcgcgtgttt
     2281 tttgggagaa aaaattggca gatgtccgca aatacgcttc aacctcccac tatctgctga
     2341 tgaatggctg tgatcaccag cctgtccaaa aaaatcttag ccaagctttg cgactggctc
     2401 gaaaactgta tccagatata gactttgttc attcaagctt tgaagaatat atcgcagctg
     2461 tcaaggaaga attaccagag gacctcagtt gcgtcaaggg agaattgact agtcaggaaa
     2521 cagatggttg gtacaccttg gcaaatacgg cttcttcgag aatctatctc aagcaggcca
     2581 atgaccaagc cagccagctt ttggaacaag ttgtagaacc cttggtggtg atgacaggag
     2641 ataaggtgcc cagagatgag ctacgttatg cctggaaact cttgttgcag aatgctcccc
     2701 atgatagcat ctgtggttgt agcgtagacc aggtgcatag tgagatggaa acccgcttta
     2761 agaaggtcaa gcaagtcgct catttcctga gccagcgctc cctagacagg tgggaaaagc
     2821 aggtggattc tagccaatta gacggcttac tatttacggt tttcaatact acagcctgcc
     2881 gacaaaccca gctagtggag gttgatttgc ttgttgaaca ggaggatttc cgagatgggc
     2941 agttagacca acactttcaa tccatggcag ctatttctct gccagccttg ggcctcttta
     3001 ccagtcaagg ccaagaggta gaagttacca ttgaagatct aggtgtcaac ttccgctacg
     3061 atttaccaaa agatgctttt cgctctgcca attttgcccg ccagattcgt gtccgctttg
     3121 tagtggaaaa tcaagcacca ttttcatggc agacctatca agtcaagccg attggtgaca
     3181 ctagggtgaa tagcagttta agtgaacagt tcgagaatga ttactaccgt attgacgtgg
     3241 tggatggtca gctcttacta gaagacaaga gaacgggtca agcctataaa gactggctac
     3301 gcttcgaaga ttatggggat ctgggcaatg aatatatctt catggcgcct aagaatgatc
     3361 aaccaatcta tggtcagata gaggacttcg gacttgtcta ccaaacagaa gcggtcagca
     3421 ttgccaaggt cgttcaccgt ttgcatctac ctgtggctat ggaaacaagt ctggaagatg
     3481 aacagaagcg actggtagaa tttaaacatc gaacatctca aaggagtcag gaaaagaaag
     3541 acctgctcct taccacctat ctgaccctct accgtcatca accacaaatt cgcatccaga
     3601 ccgatttcca caaccaaatc aaggaccatc gcttacgagc agtctttgat attggtatag
     3661 aagctgagaa ccacttggcg gattccatct ttgaagtcgt tgaacgtcca aatcagccac
     3721 atccagcctg ggaaaatccg tccaatcctc agcgtcatcg cagttttatt tgtctatcag
     3781 atgatcgaca agccatgacc gtttcgagca agggcctaca tgagtatgaa atcctagata
     3841 ggggcaagat agctttgaca ctgcttcgtg cgactggaga gctaggagat tggggctatt
     3901 tcccaacacc agaagcccag tgtttgaggg aatgtcagtt ggactatgcc tttgaaattt
     3961 gcccagtaga ggaaggtttt gccagcttcc aaagagcgca ggccttccaa ggacacttgc
     4021 taactaaaca gttgactagc catagtgggc atctgccgtg taatcatcag tttttgagcc
     4081 atcctgcact tgaagaggac cgcttatgcg tgacttcatt gaaggtggca gaaacttcgg
     4141 accgcattct gcttcgttac tacaatatga gtcaggagca gttagcaggc tggagtgagt
     4201 ggactgaggg ggttgatttg ctagaagaac cactagagga tttgccggat aggattgggt
     4261 cacaggcaat ccgaacagag gtcattggct atcttgaaaa ggagaaagaa tatggtagta
     4321 gcctgttttg atattggagg cacgggtata aaggcgggcc tgattggttc agataagcag
     4381 ataaactata ggcaggaatg gaaaacacca tctagtttag aggaattgtt agggcttatg
     4441 gatagtgtta ttcagccggt aaacggcttg gaggcaattt ccctcagtat acctggagcg
     4501 gtagaccttg aaacaggtgt catccagggg ctgagtgccg ttccttatat ccatggtgta
     4561 tcttggtatg agttattgag tcagtatggc tgtcctgtgt atttggaaaa tgatgccaat
     4621 tgtgtcggtc tgagtgaact ggctgttgat gaccagttat cgacctttgc ctgtgtcgtc
     4681 tgtggtacgg gtatcggtgg tgccttgatt gtggatagaa aacttattcg tgggaaacaa
     4741 ggtttcggtg gcgaatttgg ctatatgctg attgctactg gaaagggacc tctcaaaaac
     4801 tggtcccaac ttgcttctac tggaagtttg gtcagacagg ttgctagtca gtatgaggaa
     4861 gctgtggaag attggaacgg caagcggatt tttgagctag cagaacaggg agatgaggta
     4921 tgtctattag ccattgaaga aatgacacgc aatctagcct atggcatttt aaatatctcc
     4981 tatttcctag aaccagaagt gctggctatc ggcggctcta tcagccagaa tccagtcttt
     5041 atccaagcca tccaggagca actaggggct attcaaaagg aatatccaga agaattccca
     5101 tatctacctg ctattcgtgc ctgccactac cagcaggatg ccaatctcat gggtgcttat
     5161 atgaagaccc tacaataagg agaaatgatc atgttacaga taaaccattc gttacagcag
     5221 tcggaggggg tcttggaaga gatttgttct gggctgggct tggattgcca gttagaactt
     5281 gaagtcgatg gtaaggagaa tttgcggatt gaaggttcag cagattctta ccgtatccgt
     5341 gcgcctaaag aatacatgat ttatcgaggc ttgcttgttt tggctagtca gttgtctcag
     5401 ggggaaactg acatacagat tctagaaaga cctgcctacc gtcaacttgg ttttatggaa
     5461 gattgttctc gaaatgctgt cctgacggtt gaagccagta aaatcttgat tagacaattg
     5521 gccttgatgg gctacagcca tttccagctt tacatggaag atacctacca actacgtgat
     5581 gaaccctatt ttggttattt ccgaggggcc tatacaaaag aagaattgca ggctattgag
     5641 gaggagtgcc accgttacgg tatggaattt attccgtgta tccagactct agcccatctg
     5701 atcgcctacc tcaaatggaa tatatcatct attcaggcca ttcgagatgt ggataatatt
     5761 ctcttgattg gggatgagag gacctatgcc ttgattgata agatgtttga agccttgtcc
     5821 catctgaaaa cacggaccat taacatcggt atggatgagg ctcacttggt tgggctgggt
     5881 caatacctca atcaacacgg ctatcagaaa cgaagtctga ttatgtgcca acacttggaa
     5941 cgggtcttgg atattgctga caagtatggc ttccattgta gtatgtggag tgatatgttc
     6001 ttccagttgt tgacagcgag taaggattat actggtcagt tggaaattga ttcggaaatt
     6061 caggcttatt tggatcgtct caaggacaga gtgaccttga tttattggga ttactaccag
     6121 accagccgtg agagttatgg tcaaaaacta gctagtcatc agcagttggg agagcagatt
     6181 gcctttgcaa gtggtgcctg gaagtggatt ggttttactc ctgataatga tttcagtatg
     6241 cggattgcac cagaagcaca tgccgcctgc caagagtatg gcgtccaaga agtgacggtg
     6301 accgcttggg gagacaatgg tggggaatgc gcaaccttct cgatcttgcc gagtcttcat
     6361 gcctgggcag aactccagta tagaggaaat ttgggctgtc tggctgagca tttctatcaa
     6421 ctacaccaag tttccctaga tgacttcctg caattggatt tgccaaataa gacacctagt
     6481 cacccaggtc caggtcatca cggtttcaat cccagtcgct acatcttgta tcaggatatt
     6541 ctctgcccct tgttgcagga gcatattgat gccgaaaaag acagtgcctt ttatcaggaa
     6601 ttagcgccta gattggcaga gattggaagc cgagccaagg gctatgccta tctctttgat
     6661 actcaggcta agttgtgtca ggttttagcg accaaggcgg caatttcagt aggtattcgt
     6721 caggcttatc aggaaggaaa tcgtcaggtc ttggcagaac aagttgacgg tttgcaacaa
     6781 ctaaggatag acctagaaag cttctatcag gcactcagct accaatggat ggtagagaag
     6841 aaggtgtttg gtctggatac ggtggacatt cgcctaggtg gcttggatgc ccgcattcgc
     6901 cgtgcaatcc agcggttgca agcctatctg aacaatgaag tacctaaact agatgaacta
     6961 gaagtgccaa ttctccctta cgatgacttc catcaggaca agggatttat tgcgacaact
     7021 gccaaccaat ggcagattat tgcgacggct tcaaccatct atacaaccta gtgatgttcg
     7081 agctcgaaag ggctcgattt tttatgcaaa ttttgattag caacccagat tttctttgtt
     7141 ttttacagaa gatatatcgg ttgttatata cacctataat ttgtagaatt ttgcctataa
     7201 tgtggcaatt cacagttggc ccaatcagga gtaaactaat aatgtaaagg ttcataatag
     7261 aaaggagcta tgatgaaaga cctcataaaa aatctaaaac aaaatgccat ttttttccta
     7321 atggtattgc caggagtcat ctggctcatt ctatttttct atattccagt atttggcaat
     7381 gtgattgctt ttaaggacta tcgccataca ggtaacggtt tttgggatag cctcatacaa
     7441 agtaagtgga taggattgga taattttaaa tttctattcc aatcatccga tgcctatatc
     7501 atcacaagaa ataccatcct atataatctt ggttttatcg tactcggact gatttttgca
     7561 gtaggtattg ccattatctt tagtgagatg cggtcgaaga agctggtaaa gatctatcag
     7621 accacaacct tgttccctta tttcctttct tgggtcatta tcagtttctt cgtttacgca
     7681 tttttgagtc cagataaagg attgataaac aatattctca aaggaatggg gatggatccc
     7741 atcaactggt acagcacacc aacctattgg cccttcatct tacttttctt aggaatttgg
     7801 aaaggtttgg gctacaacag tattatttat tatgcaacca ttatgggcat tgacccaacc
     7861 tactatgaag ctgcgattgt ggatggagcg accaagtggc aacgcatccg ctatgtcacc
     7921 cttcctcagt taatgcctct gatgactatt ttaacgattc tggctgtcgg aaatatcttc
     7981 cgagcagact ttggcctttt ctatcaaatt ccgaaaaatt caggtcctct cttcaatgtg
     8041 actcaagtcc ttgataccta cgtttatcgt ggaattgcag gaacagggga catcggtatg
     8101 gctatcgcag caggtctcta tcaatctgtt gtcggctgta tcttggtggt agtgaccaac
     8161 ctgattgttc gtcgctttga taaggaatca gccttattct aggaggggag tatgaaaaaa
     8221 aagaaacaaa tcacttctgt ttctattcat tcatttagta agaaaacaga tctatttttc
     8281 tcaagtttac tagggatatt tgccctatct tgtacccttc ccttcatatt tgttatcatc
     8341 atttctatga cagatgagac aagcttggct atcaacggct attctttctg gccagagcaa
     8401 tggagtttgg caggttatga atatctcttt caattgaaag atcagattct ccaagccctc
     8461 tttatcacct tctttgtgac cattgtaggg acgagcttga atgtcttctt caccgttctt
     8521 tacgcctatg ccatttcgag aaacagtttc agatacagac gattttttac cttgatggct
     8581 ctctttacca tgctgtttag cgcagggacc atcccaacct atatcgttat gacctcgttt
     8641 ttaaatctca aagatacagt ggcagccttg attctaccca tgctgttgtc tcctttcaat
     8701 atcatggtga tgaggtcctt ctttagaaag actatttctg agtctattat cgaatctgcc
     8761 aggattgacg gggccagtga atttcggatt ttcttccaaa tctgcttacc actaacccta
     8821 ccaggtattg caacaatcgc tctctttaca gccctcgctt tttggaatga ttggtacaac
     8881 gctctcctct atatccagag cgataacctc ttccccctcc aatacctgct gatgaaaatt
     8941 caagcaaaca ttcaatatct ctctgaaaat gctgccgcag cagcggccat gtcatcagaa
     9001 gttgcagggg cccttccaaa agaagcaaca cggatggcta ttgtggtcgt atcgactcta
     9061 ccaattgcct gtctctatcc tttcttccaa cgttactttg tcaaaggttt gacaattggc
     9121 ggagtcaagg agtagagaca tcactctatc ttaacaatcg tattccatac ttcattatct
     9181 aaaaaaatag aaaggaacag ccaaatgaaa acatggaaaa aatttgccta ctcctgcgtg
     9241 acccttgcgt ccgcagctgc ccttgccgct tgtggtagtc tgactggaaa taagaccgca
     9301 tcaagtagcg ctacaacaga agatggattg acaaacatcc tcatgtatca aatcggagac
     9361 gcaccgaaaa acatcgatgt tcttttggaa aatgccaata agattatcga aaaagaagca
     9421 ggcgcccatc tagacatcaa gtatatctca tggggtgact ataaggataa aatggccatt
     9481 attacctcat ctggtgagga atatgatatt gcctttgcag acaactatat tatcaatgcg
     9541 caaaaaggag cttatgctga tttaacagaa ctttacaaga aagaaggcaa ggccctctat
     9601 gacattattg accctgccta tatcaaagga aataccatcg acggaaaaat ctacgcagtc
     9661 cctgtcatcg gtaatgtagc tagtcaacag atgctttcct tcaaccaaga catggttgat
     9721 aagtatggtt ttgacatttc caaagtagat agctacgatg atgtggaaag catgttggca
     9781 accatcaaag aaaaagaagc agatgtgaca ccatttgcct gggtaaaatc tagcaaacca
     9841 tcaacagacg gtttggaata tccagctggg aatgagttac catttgctat cgacttgaaa
     9901 ggcgacacta caaaagtggt aaacccattt gaagtggacc gtcacatgga taaccttcgt
     9961 accattcaca aatactataa ggctggctac attatggcag atgcagcgac tactgacgca
    10021 accttctcac ttgatgtagc aaactggttc gttcgtgaag aaacacaagg accagctgac
    10081 attggcgata gcctcctttc aacagttgca ggctataaga ttacttctaa accaatcaca
    10141 tctgcctata agacaagcgg atctacccaa gtagcaaact ttgtcatttc aaaaacatct
    10201 aagaacaaag aaaaagctat ggaagtattg acccttatca atacaaatcc agaattgctg
    10261 aacggcttgg tatttggtcc agagggagtc aactgggaaa aagacccaag tgctgaaaat
    10321 cgtatcaagt tgttggatgg ttacaaaggc gatactcgta tgtcagcttg gaacacaggt
    10381 aacagccaaa ttctctacat cactgacaag gtaacagatg aagatgtgaa aaaagcagaa
    10441 gaattgctgg caggtgcaga agagtctcca cttcttggct tcaacttcaa tgctgatgca
    10501 gttaagactg aaattacaag tatccaaaat atcatgagcc aatatgcagc aagtatcaat
    10561 actggtactg tggatcctga tgttgctgtt ccagaaatgc tgaaaaaatt ggaagcagaa
    10621 gaatcctaca aaaaagtaaa agaagaaatg caaaaacaat acgatgagtt tttagcaaat
    10681 aaataattcg atacaggtga tgaagtgtga aaagagggag tgggaaagaa ctcgactggt
    10741 ctaaaaaaag ttcgtcaaca atttttcatt ttaagttgtt gagctgaaac agtctatccc
    10801 ca
//
LOCUS       DASFRC010000078        10051 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.078, whole genome shotgun sequence.
ACCESSION   DASFRC010000078 DASFRC010000000
VERSION     DASFRC010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10051)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10051)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10051
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.078"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(29..163)
                     /locus_tag="U1087_001326"
                     /pseudo
     CDS             complement(29..163)
                     /locus_tag="U1087_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774957.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
     gene            163..708
                     /locus_tag="U1087_001327"
                     /pseudo
     CDS             163..708
                     /locus_tag="U1087_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002288738.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
     gene            790..1326
                     /locus_tag="U1087_001328"
     CDS             790..1326
                     /locus_tag="U1087_001328"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755801.1"
                     /translation="MANYVYQQVICSKDFFETYFLDYYPIDEKRIDPPYISFNKLVCV
                     KNIGEYREQFGEYIYYGYGFTHKIRSDGLMVLKFATKRDVPIAAIRAAIQLDHSLEWY
                     AVEENCIYVSRFYWNHGVQEEIYLLDDDFGRWAEARYEFEEALADSDHIVWYYLLENK
                     INWIDRATLLDLPRYYEE"
     gene            1346..3049
                     /locus_tag="U1087_001329"
     CDS             1346..3049
                     /locus_tag="U1087_001329"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755802.1"
                     /translation="MWTKRIGYITEPRKLVDYFLSVGQFHDYLIGSFSYDSQSASLRL
                     TIEEDCLAESHSNEPALVWDLECQGVTNFRMQDMEGLSRWWIYEVLYDGTTCQFQLVN
                     GYFSFSAESFKLGIPHKPTTEGHPAITRLQYDYFLQEFEAGMNVDETAFRFETDNQDI
                     LRYIGYSGNEEPYWAGLSDLPDGGRFKTANELFEAKIYDGQSLKERWSEINIYSIHSL
                     PLDDWLSCVPHSVETHVYEPDDEYGLYINGVELDGFIDEDGKPCPSCGKAPCYLDDYD
                     EHFCPYCNSWMTEDLWDRDEVHYFEKRPLEPELLWKPNKMLRFCQVQFLHGEKFYSYY
                     CPDQTINKGDWVEVSVGKQAVKKDVQVVAIFTAPADRPPYPLDKIKTVLGKSREWSEM
                     IAEKLENLLTHGHICDLSEEKIPADSSIAYDLLKTPVGNFWLELDGQPIKMSVIAHYP
                     NLEDTYFVEGSYHLKPFEPDFTDFKRLSICTDIDFRTARLIDNLGGEHQYGNNWQVGD
                     YDIGIVAHPYSYDEEEVDENVLGIPYFREWIEDYQHLPCFSVAWKYYTSDKDLSIWFN
                     V"
     gene            complement(3173..5041)
                     /locus_tag="U1087_001330"
     CDS             complement(3173..5041)
                     /locus_tag="U1087_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011528775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HEM4755803.1"
                     /translation="MTLVTNLKQHSHIITTALCLALILIGILLFQTEQGWAPILFISA
                     FVIGGYQSAKEGISELIFDKHLSVDLLMILAAIGSGLIGYWMEGALLIFIFSLSSTLE
                     ELAMEKSKNAIAALMNMTPPTARKIEENGDITVLDTAAIRIGDLLQVRKGDTVPLDAT
                     LISPQSIFDESMITGEPLPAEKMAGAAVIGGTINQGPTVTVQVTAEKGDALFDKIVQM
                     VENAQESKSKTATFIENMEDTYVKVVLVVVPLFILFAHFALGWDWLTAFYRGMILLTI
                     ASPCALVASSSPATLSAISRAARKGMIIKGGDIADNIANLEAIVFDKTGTLTIGKPEV
                     VGASYLGDEELIKQVVQAVEKQSSHPIAQALMTYTADSSAIALQSLEDVTGKGLVARY
                     EGDKWKIGKAGFVVDSLVSPLSADLLAQIDEAESTGKTLVYVSQNDVLVAIFMVEDSL
                     KPESKQLMAQLKEMGVTPILLTGDQEKTARYVASQVGIDRVIANCLPTDKAAVIQKLQ
                     TEFASVGMVGDGINDAPALAQANVSYAMGNGTDIAMESADIVLMEDLTRIPYSIRLSK
                     KMRDIIKQNIIFALSVIALLIISNLFQSINLPLGVVGHEGSTILVILNGLRLLYFK"
     gene            complement(5205..5660)
                     /locus_tag="U1087_001331"
     CDS             complement(5205..5660)
                     /locus_tag="U1087_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HEM4755804.1"
                     /translation="MELHSHFNGENQTAFEHVIQHLKEKGVRITETRKAVVAYIIESD
                     DHPSAEMIYQDLLPNYPNMSLATVYNNLKVLLEEGFITELKRTNDTTTYYDFMGHEHL
                     NVICEVCGKITDFMDVEIPSLKKEAHTQTGYKITKEVLSIYGICPDCQG"
     gene            5827..6576
                     /gene="truA"
                     /locus_tag="U1087_001332"
     CDS             5827..6576
                     /gene="truA"
                     /locus_tag="U1087_001332"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011999919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HEM4755805.1"
                     /translation="MTRYKAIISYDGHDFSGFQRQPHARTVQEEIEKTLVRLNSGQPV
                     TVHGAGRTDAGVHAYGQVIHFDLAGSRDTEKLRFALDTQTPEDIDVVSVEQVADDFHC
                     RYAKHSKTYEFLVDIGRPKNPMMRHYATFYPYDLDLSLIEEAIQDLVGTHDFTGFTAS
                     GTSVEDKVRTITAASMEYDQRREFLIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVGQ
                     IKRILAEKDRGLAGPTAAGNGLYLKEIIYED"
     gene            6566..7327
                     /locus_tag="U1087_001333"
     CDS             6566..7327
                     /locus_tag="U1087_001333"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004184219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HEM4755806.1"
                     /translation="MKTKYILALSGNDIFSSGGLHADLTTYAVHKLHGFVAVTCLTAM
                     TEKGFEVIPTETVVFAQQLASLKDVPFSAIKIGLLPTVDIAEQALAFVKAHQEIPVVL
                     DPVLVCKETHDTEVSQLRDELLKFLPYVSIITPNLAEAQLLLQKDIETVEEMKQAAVA
                     LYDLGAKAVVIKGGNRLDGSEAIDVFYDGQEVVVLQSPLLSENNVGAGCTFASSIASQ
                     LLLGREPFEAVRLSKDFVHAAIEKSDDYGVIQYEK"
     gene            7317..7802
                     /locus_tag="U1087_001334"
     CDS             7317..7802
                     /locus_tag="U1087_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HEM4755807.1"
                     /translation="MRNKKTQELVLLAILTALSLVLAFVHVPTATGFVTLLDVGVYFT
                     AFYLGKKEGAIVGGLAGLLIDFLLGYPQWAFFSLLFHGAQGYFAGWTGKKRILGLVLA
                     TLSMVGGYYLASRIYFNDLKAIESVLSNALQNTVGLVVGYILAQSIERIGAVNHVIKG
                     N"
     gene            7783..8349
                     /locus_tag="U1087_001335"
     CDS             7783..8349
                     /locus_tag="U1087_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01440 family protein"
                     /protein_id="HEM4755808.1"
                     /translation="MSLKEIKDQTKQVVEEVLDLSNLQKGQIFILGLSSSEVIGGHIG
                     KNSSIEVGEVIVETVLDILTPKGIYLAVQGCEHLNRALVVERELAIQKDLEIVNVLPT
                     LHAGGSGQLAAFKYMKDPVEVEFITAQAGVDIGDTAIGMHIKHVQVPLRPSLREIGQA
                     HVTALASRPKLIGGARAAYQEDKIRKGS"
     gene            8349..8963
                     /locus_tag="U1087_001336"
     CDS             8349..8963
                     /locus_tag="U1087_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1349 domain-containing protein"
                     /protein_id="HEM4755809.1"
                     /translation="MKEFTVKDLVWTRPPRQFTISDEEITITTHPQTDLWQKTYYHFV
                     NDNAPVLQMETEEDYFSFTVRTDFAGSHTRFDQCGIVLYQDSENWLKCSIEYENEDFQ
                     HLGSVVTNHGFSDWATTEISSQIKSMWFRLSRRGADYCFENSEDGIHFKQMRVCHFHQ
                     GAGKIAFGLYACSPENSSFTARFTNMELSDCKWQAHDGQEPDEI"
     gene            9235..9999
                     /locus_tag="U1087_001337"
     CDS             9235..9999
                     /locus_tag="U1087_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755810.1"
                     /translation="MTKGYQQRFSLSILLWMRQDKARQEGMDYWSGGHAQIIAASPGL
                     LEYRQQHLSETEHSFWPKATGLETAVPEDRRIDGIAEVTYQKLLAPIGGRRQTALAFE
                     DEVNVFRRTLMHMGFPYSSRWYHTSTQAQTQLRDVLYFRRKDGVKSSSFKKFVQDGLA
                     SQLATVPGVTEVRSQVYLPWNKATWNTPNVAHDNPKEDHLHASIILGFADQVAREAFY
                     ANLAPQLNAEVVQYSSAVHAYHIEKTLPFVLDGKRM"
BASE COUNT         2775 a         2007 c         2422 g         2847 t
ORIGIN      
        1 tttaaagact gttttttcga tgtaactctc actctttcac atattccaaa atatctcctg
       61 gctggcagtc taggatgcgg cagatgctca tcagggtatt aaaacgaatc ccttttgcct
      121 tgcctgtctt gagaatggac agattggctt ctgtaatacc tatatttgcg ttatggtgga
      181 cctgaatttg ccggccatct ctttgatcag ccgacctttg atcaggccat ccaagaattt
      241 ttacggaaaa aagcagagct ggcaaactat tttgaagata ggacagaaga catctttgac
      301 tatattccac ctcaaaagac caaccaaatc ttcaaaccga agaagcttgt tcagaaaatg
      361 gtggatgagt tggaaaaaga aaatcctggt atcttcgatg actcgtccaa aacctttatt
      421 gacctctata tgaagtcagg gctctatatc acagagttgg tcaaacgcct ctataatagc
      481 caaggcttac aagcagtctt tccagaaagg catgataggc tcaagcatat cttggaagag
      541 caagattacg gctttgcgcc aacggctatt atccataaga ttgctttgga gttcatcttt
      601 ggtaccctac ctgacaccat cagtcggaag aacttcttac aagtggatac tgttccttat
      661 accaaggacg gcaggatgca ggagttgata gataaatctt ttgggtaaat tgaaggaaaa
      721 cttgtcattt ttgtcaagtt tttcagataa ggtgctatac taaaactagg aatgaagggt
      781 ggatatgtta tggcaaatta tgtttatcag caggtcattt gttccaaaga tttttttgaa
      841 acctactttt tagattacta cccgatagac gaaaaaagga ttgatccacc gtatattagt
      901 tttaataaac ttgtctgtgt gaaaaatatt ggtgaatata gggaacaatt cggtgaatac
      961 atctattatg gttatggatt cacgcataag atacggtcag atggcttgat ggtcctaaag
     1021 tttgcgacaa aacgtgatgt tcctatcgct gcgattagag cggctattca actggaccat
     1081 agtctggagt ggtatgcggt tgaagaaaat tgtatctatg tttctcgttt ttattggaat
     1141 catggtgttc aagaagagat ttatttacta gatgatgact ttggaagatg ggcagaggct
     1201 agatatgagt ttgaagaagc actggccgac tcagatcata ttgtctggta ttatctattg
     1261 gagaataaga taaactggat cgacagggct accttgctgg acctaccgag atattatgag
     1321 gagtgatttg tgagaggaga atatcatgtg gacaaaaaga ataggctaca ttaccgaacc
     1381 taggaagttg gttgattatt tcttatctgt tggacagttt catgattatt tgattggttc
     1441 tttttcctat gatagtcagt cagctagtct acgtttaacc attgaggagg attgtttagc
     1501 agaaagtcat tccaatgagc cagccttagt ttgggatttg gaatgccagg gagtaacaaa
     1561 ttttagaatg caagacatgg agggactttc gaggtggtgg atttatgaag ttttatatga
     1621 tggaactact tgtcaatttc agcttgtaaa tggctatttt tccttctcgg cagaaagttt
     1681 taagttggga attccccata aaccgactac agaagggcat ccagccatta ctcgtttgca
     1741 gtatgattat tttctgcaag aatttgaggc ggggatgaat gttgatgaga ctgcttttcg
     1801 ttttgagaca gataatcagg atattcttcg atatattgga tattcaggaa atgaagaacc
     1861 ctactgggca ggtttgtcag atctaccaga tggtggaaga tttaagacag ctaacgagct
     1921 ttttgaggca aaaatttatg atggtcaatc tctcaaggaa agatggagtg agatcaacat
     1981 ttatagtatt cattctttgc ctttggatga ctggttgagt tgtgtaccac attctgttga
     2041 aacgcatgtg tatgaaccag atgatgagta tggtctctat atcaatggtg ttgaattaga
     2101 tggttttatt gatgaggatg ggaagccttg tccatcttgt ggtaaagccc catgttattt
     2161 agatgattat gacgaacatt tttgtcctta ttgcaatagc tggatgacag aggacttgtg
     2221 ggatagggat gaggtgcact actttgaaaa acgtcctctt gagccagaac ttttatggaa
     2281 accgaataaa atgctacgat tttgccaggt acaatttttg catggtgaaa agttttattc
     2341 ctattattgt cctgaccaaa ccataaataa gggagattgg gtggaagttt cagttggcaa
     2401 gcaagctgta aaaaaagatg ttcaagtagt ggctatcttt accgctccag cagaccgtcc
     2461 tccctatcct ttggataaaa taaaaaccgt actaggaaaa tcaagagagt ggtcggaaat
     2521 gattgcggaa aaactggaga atttactaac tcatggccat atctgtgatc tatcggaaga
     2581 aaaaatccca gccgattctt ccatagctta cgacctcttg aaaactccag tcggcaattt
     2641 ctggttggaa ttagatggtc agcccataaa aatgtcagtt atagcccatt atccaaatct
     2701 tgaggatacg tactttgtgg aaggaagtta tcatctgaaa ccttttgagc cggattttac
     2761 tgattttaag agattatcga tttgtacaga tattgacttt agaactgcca gactgattga
     2821 taacttaggc ggtgaacatc aatacgggaa taattggcaa gttggtgatt atgatattgg
     2881 aattgtcgcg cacccatact catacgatga agaagaagta gatgaaaatg ttttaggaat
     2941 tccctatttt cgtgaatgga tagaagacta tcagcatcta ccttgctttt cggttgcttg
     3001 gaaatactat acttccgata aggatttatc catctggttc aatgtctaac tgaatggagt
     3061 accctctgca tgagctaggc ttaggttgta aatctctctt catttcaata ataaaagtat
     3121 tttccatatc aataaagaaa ccgccaagtt gttagtagct ggcggctttc tgctatttaa
     3181 aatacaagag tctcagtccg ttgagaatga ccaaaatcgt tgatccttcg tgcccgacca
     3241 cgccgagcgg caggttgata gactggaaga ggttggagat gataagaagg gcaatgacag
     3301 atagagcaaa gatgatgttc tgcttgatga tgtcccgcat tttcttagag agacggatgg
     3361 agtaaggaat ccgggtcagg tcttccatga gcacgatgtc agccgactcc atagcgatgt
     3421 ccgtaccgtt tcccatagca tagctgacat tggcttgggc aagggcagga gcatcgttga
     3481 taccgtctcc caccatgccg acagacgcaa actcggtttg cagtttttgg ataacagcag
     3541 ccttatccgt cggcagacag ttggcaatca cacggtcaat accgacctga ctcgccacgt
     3601 aacgagccgt cttttcttgg tcacccgtca agagaattgg cgtcactccc atttctttca
     3661 actgggccat tagctgcttg ctctcaggtt tcaaactatc ttccaccatg aagatcgcca
     3721 ccagcacatc attttgacta acatagacca gggttttccc agtgctttcc gcctcatcga
     3781 tctgtgccag caagtcagca gaaagcggac tcaccaggct gtccaccaca aatcccgcct
     3841 taccgatttt ccacttgtcg ccctcatatc tcgccaccaa gccttttccg gtcacgtctt
     3901 ctaggctttg gagggcaata gcagagctgt cagccgtata ggtcatcaga gcctgagcga
     3961 tcggatggct tgattgtttt tcaactgcct gaacaacctg cttgataagc tcctcatcgc
     4021 caagatagct tgcccctaca acctcaggtt taccaatggt tagggtaccc gtcttgtcaa
     4081 agacgatggc ctctagattg gcgatattgt ccgcaatgtc accgcccttg ataatcatgc
     4141 ccttgcgtgc cgcacggctg atggcagaaa gtgttgcggg tgaagaagaa gctacgaggg
     4201 cacaaggaga agcgatagtc aagagaatca tgccacggta gaaggcagtt aaccagtccc
     4261 agcccagagc aaaatgagca aagagaatga agagtggtac caccaccaaa acaaccttga
     4321 cataggtatc ttccatattt tcaatgaaag tcgctgtttt tgatttggat tcttgggcgt
     4381 tttcaaccat ttggacgatt ttatcgaata gggcatcgcc tttctcagcc gtaacttgta
     4441 cagtcacagt tggtccttgg ttaatggttc cgccgataac agcagcgcca gccattttct
     4501 ccgcagggag cggctcgcct gtaatcatgg attcgtcaaa gatggattgg ggactgatga
     4561 gggtagcatc cagtgggacc gtgtcaccct tccgaacttg caagaggtcg ccaatgcgga
     4621 tggctgcggt gtctaagaca gtaatgtcac cattttcctc gattttgcga gccgttggag
     4681 gcgtcatatt catcagagct gcaatagcat tcttgctttt ttccatggct aattcttcca
     4741 gagtagaaga aagggagaag atgaagatga gtagagcccc ttccatccag tagccaatta
     4801 gaccagagcc gatagcagct aaaatcatga gcaggtcaac ggacaggtgc ttgtcgaaaa
     4861 tcagctcaga aatgccttcc ttggctgact ggtagccccc gatgacaaag gctgaaatga
     4921 agaggatagg agcccatccc tgttcagtct gaaacagaag gatacctatt agaatgagcg
     4981 ccaagcagag agcggttgtg atgatgtggc tgtgttgttt gaggttggtt acgagtgtca
     5041 tagtttgctc ttccttattt agaattatta tcatttaacc aagttaatta taacagttct
     5101 aaatagaaag tcaagttatt tataataatt ctaaataaga aagttcagac aattcaaagg
     5161 aaaataaaaa aaaagcgaca gaaagccgct ttgatattca tcttttagcc ctgacaatca
     5221 ggacaaatgc cgtagatgga tagtacctct tttgtaattt tgtaaccagt ttgggtatga
     5281 gcttccttct tcaagctcgg gatttctaca tccatgaaat cagtgatttt tccacagact
     5341 tcacaaataa cattgagatg ttcgtggccc atgaaatcat aataggttgt cgtgtcattg
     5401 gtacgcttga gttcagtgat aaatccttct tccaagagaa ctttgaggtt gttgtaaaca
     5461 gtcgccagac tcatgttggg gtagttaggt agtagatctt gataaatcat ttcagcacta
     5521 gggtggtcat cgctttcgat aatgtaggca acgactgctt ttctagtttc ggtaatgcgt
     5581 acaccctttt cttttagatg ttggatgacg tgttcaaaag cagtttggtt ttctccattg
     5641 aagtgagaat ggagttccat agtttcctcc tttcgttatt attttataaa aattctaaga
     5701 tacaatattc agtttcatta tagtgtattt gggaggttgt gtcaattttg agacaggaaa
     5761 tctgtcatag gacagtttgg tgtctcatga cttgtttaca tacttttcct gtgctacaat
     5821 caaaacatga caagatataa ggcaattatt tcctatgacg gacatgattt ttctggtttt
     5881 cagcgccagc cccatgcccg tacagttcag gaagaaatcg aaaaaacgtt agtaagattg
     5941 aacagtggcc agccagtaac cgttcatgga gcaggtcgga cggacgcagg agtgcacgct
     6001 tatggtcagg tgatccactt tgacttggct ggcagtcgag acactgagaa gctccgcttt
     6061 gcccttgata ctcaaacccc tgaagatatt gatgtggtca gtgtggagca ggtggcggat
     6121 gattttcatt gccgctatgc caagcacagc aagacctacg agtttctggt ggatattggg
     6181 cgacccaaga atcccatgat gcgacactat gcaacctttt atccctatga tttggacttg
     6241 agcttgatag aagaagccat tcaggacttg gtggggaccc atgacttcac aggctttaca
     6301 gcttcgggga cctcggtcga ggacaaggtg cggaccatta cggcggcaag catggaatat
     6361 gaccagcggc gggagttctt gattttcacc ttttcaggaa acggtttttt gtacaagcag
     6421 gtgcgcaata tggttggcac cttactgaaa attggcaatg gtcgcatgcc tgttgggcag
     6481 attaaaagga ttttagcaga aaaggatcgt ggtttggcgg gaccgactgc ggcgggtaat
     6541 ggcctctatc taaaggagat tatttatgaa gactaagtat attttggcgc tttcgggcaa
     6601 cgatattttc agcagtggcg gtctccatgc ggatctgacg acctacgctg tccacaagct
     6661 gcatgggttt gtggcggtga cctgcttgac agctatgacg gaaaaaggtt ttgaggtcat
     6721 tccgacggag actgtggtat ttgcccagca actggctagt ttgaaggatg tgcccttttc
     6781 tgcgattaag atcggcttgc ttcccacagt ggacatagca gagcaggctt tggcgtttgt
     6841 caaggctcac caggagattc ctgtggtctt ggatccggtc ttggtctgca aggaaacgca
     6901 cgataccgag gtcagccagt tgcgagatga actcttgaaa ttccttcctt atgtcagcat
     6961 tatcacacca aatctggcag aagctcagct attgctccaa aaggatatcg aaacggtgga
     7021 agagatgaag caggcggcag tggccttgta tgacttggga gccaaggcgg tggtcatcaa
     7081 gggaggtaat cgtctggatg gctcagaggc gatcgatgtt ttctacgacg gtcaggaagt
     7141 ggtggtgctc cagtcgcctc tgctgtcaga aaacaatgtg ggggcaggct gtacctttgc
     7201 gtccagcatt gccagtcagc ttttgctggg aagagaacct ttcgaggcag tcagactgtc
     7261 caaggacttc gtccatgcgg cgattgaaaa atcagatgat tatggggtga ttcaatatga
     7321 gaaataagaa aacacaggaa ttagtattat tagctatctt aacagccttg agcttggtat
     7381 tagcctttgt tcatgtgcca actgcaactg gttttgtcac gctcttggat gttggggtat
     7441 attttacagc cttttacttg ggcaagaaag agggagccat tgtcggcggt ttggcagggc
     7501 tgttgatcga tttcttgttg ggctatcccc agtgggcttt ctttagtttg ctcttccacg
     7561 gtgctcaagg ttattttgcg ggttggacag gcaagaaacg gattctcggt ttagtcttgg
     7621 cgacactctc tatggttggt ggctactacc tggcatctcg gatttatttt aatgacctca
     7681 aagccattga aagtgttcta agcaatgcct tgcaaaacac agttggtttg gtagttggtt
     7741 acatcttggc tcagtcaata gaaagaattg gtgcagtaaa tcatgtcatt aaaggaaatt
     7801 aaagaccaaa ctaagcaggt tgtcgaggaa gttttagacc tcagcaatct tcaaaagggg
     7861 cagatattta tcctaggttt gtcttctagt gaggtgattg gtgggcatat cggaaaaaat
     7921 tccagtatag aagtcggtga agtgattgtt gaaaccgttt tggatatttt gactcccaag
     7981 gggatttatt tagctgtcca aggctgcgaa cacctcaatc gtgccttggt ggtggagcgg
     8041 gaattggcaa tccagaagga cttggaaata gtcaatgtct tacccaccct tcatgcaggt
     8101 ggctccggtc agctggcggc cttcaagtat atgaaggacc cggtggaagt cgagtttatc
     8161 accgcacagg ctggtgtaga catcggcgac acagctattg gcatgcacat caagcacgtc
     8221 caagtgccgc tcagaccaag tttgcgtgag attggacagg cccatgtcac agctctcgcc
     8281 agccgaccaa aactaatcgg cggagcccgt gcagcctatc aggaagataa gatacggaaa
     8341 ggttcataat gaaagaattt acagtcaagg atttagtgtg gacccgtcca ccgagacaat
     8401 tcactatttc agatgaagaa attaccatta ccacccaccc ccagacggat ttgtggcaga
     8461 agacctatta ccattttgtg aatgacaatg ctcctgtctt gcaaatggaa acggaggagg
     8521 actatttttc ctttactgtg aggacggatt ttgcgggtag tcatactcga tttgaccagt
     8581 gtggaattgt cctttatcaa gattcggaga attggctaaa gtgttcgata gagtatgaaa
     8641 atgaggattt ccaacacttg ggaagtgtgg tgactaatca cggcttttct gactgggcaa
     8701 ctactgaaat cagttcacaa atcaaatcca tgtggtttag gctcagtcgc aggggagcag
     8761 attactgttt tgaaaattcc gaagacggta tccatttcaa acaaatgcgg gtttgccatt
     8821 ttcatcaagg ggcggggaaa atagcttttg ggctgtatgc ctgttcacca gaaaactcca
     8881 gttttacagc tcgctttacc aatatggaat tgagcgactg caaatggcag gcccatgatg
     8941 gccaagagcc agatgaaata tagtgagagt cttaggtaag tagtaacaga aaaatagttg
     9001 aaacttatac tcttcgaaaa tcaaaaagct ccgttgtcaa cttgccttga agaactcctg
     9061 ttcaatcttc gccgtcgttt ccaaggcgac ttttgatttc cattgagtgt caggaagtaa
     9121 ctttcgacta gtaagagagt tacttttttt atcttttgag ccaaatcctt gccaagaagt
     9181 ctggcttgtg ataaacttgt tcctgtaaat gatacaagaa cagaaggaga agacatgaca
     9241 aaaggatacc aacaacgatt ttcactgtcc attttattat ggatgcgtca ggataaagca
     9301 cgccaagagg gaatggacta ctggagtggc gggcatgcac agattattgc agcttcaccg
     9361 ggtctattag aataccgcca gcaacatttg agtgagacag aacatagttt ttggccgaaa
     9421 gcgacaggct tggaaacggc tgttccagaa gatcgtcgga ttgatggcat tgcggaagtg
     9481 acctatcaaa agttattggc accaataggc ggtcgccgtc agacggccct ggcctttgaa
     9541 gatgaggtca atgttttccg tcggactttg atgcacatgg gcttccctta ttcatcacgt
     9601 tggtaccata ctagcactca ggcccaaacc caactgcgtg atgtcctata cttccgtcgc
     9661 aaagatgggg tgaagagcag tagtttcaaa aaatttgttc aagatggact cgccagtcaa
     9721 ctggcgacag tccctggagt aacagaagta cggtcgcagg tctatcttcc ttggaataaa
     9781 gcgacttgga ataccccaaa tgttgcccat gacaatccta aagaagacca ccttcatgcc
     9841 tccatcatcc taggttttgc ggatcaggtg gcaagagagg ccttctatgc caacctagct
     9901 ccgcagttga atgcagaagt ggtgcaatac tcctcagcag tccacgccta tcatatagaa
     9961 aaaaccttgc catttgtcct agacggcaaa cgcatgtaag acaagcgact tcttggtcga
    10021 atgctttatt aaaaaaatat agtcgaatga a
//
LOCUS       DASFRC010000079         9872 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.079, whole genome shotgun sequence.
ACCESSION   DASFRC010000079 DASFRC010000000
VERSION     DASFRC010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9872)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9872)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9872
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.079"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..475
                     /locus_tag="U1087_001338"
     CDS             <1..475
                     /locus_tag="U1087_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="isoprenylcysteine carboxyl methyltransferase
                     family protein"
                     /protein_id="HEM4755811.1"
                     /translation="ILKNGGSEFGVQNTKLLTVVHILFYLSCLVEAVVRHAKFDTLSS
                     LGLIFLLFSMGMLFWVTRLLGDIWTVKLMLVKDHRFVDHWLFRVVKHPNYFLNIIPEL
                     IGLALLCHATYSFLILFPVYMVILYRRIHEENNLLKTVIIPNGTVQSAAEITGNN"
     gene            complement(684..1592)
                     /locus_tag="U1087_001339"
     CDS             complement(684..1592)
                     /locus_tag="U1087_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HEM4755812.1"
                     /translation="MKIDDLRKSSNIEDRRGQSSSNSSFLSGSSGGNVLLGLLFSRLG
                     WKGKLLVLVLLVAFGGMSNLGGLLSPSTRTNPYQSSQVTTTGTDMSDADAEFMSKVLG
                     STEDFWVQEFKANGLTYNAPTMVFYTNQTQTGCGVGSAQAGPFYCSADRKIYIDTSFY
                     QELSSKYKAAGDFAMAYVIAHEVGHHVQNELEVLGAYHQKRAQLSDKEGNALNVRLEL
                     QADYYAGAWAKYVDGHGILDAGDIDEAMNAAHAVGDDTLQQEAYGRTVPDSFTHGTSE
                     QRKKWFNLGYTYGDLAHADTFSVEKP"
     gene            1758..3101
                     /locus_tag="U1087_001340"
     CDS             1758..3101
                     /locus_tag="U1087_001340"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HEM4755813.1"
                     /translation="MVEYLSVSHLTKYLKLKFDRDPYLEKVYLTGQVSNFRKRPSHQY
                     FSLKDDKAVIQATMWAGVYKNLGFELEEGMKINVIGRIQLYEPNGSYSIVIEKAEPDG
                     IGVLAIKFEQLKQALTQEGLFKEEFKQALPRFTKKIGVITSPSGAVIQDIITTVSRRF
                     PGVEIVLYPTKVQGDGAAQEVVANIQRANERDDLDVLIVGRGGGSIEDLWAFNEEIVV
                     RAIFESRIPIISSVGHETDTTLADFVADKRAATPTAAAELATPVTKADLLGYLNQQEN
                     RAYQAMTNRLKFLRGQLEKISQSVMFRQPERLYDGYLQKLDRLTNQLQTRMKELYSQQ
                     KQASLLLQQRLQGVHPGRKVESFQERIIQQERLLKSNMANIYDNKMAKADKLIEALTM
                     LDTSRIVARGYAMIRQDGRVIDSVENVQIGENLTIQMKDGQLDVEVKHVQTDENI"
     gene            3076..3291
                     /locus_tag="U1087_001341"
     CDS             3076..3291
                     /locus_tag="U1087_001341"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002963102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HEM4755814.1"
                     /translation="MSKQTKTFEENLAELEGIVTKLERGDVALEEALAEFQKGMVLSK
                     DLQKTLAAAEKTLVKVMQADGSEAEMD"
     gene            3291..4163
                     /locus_tag="U1087_001342"
     CDS             3291..4163
                     /locus_tag="U1087_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000256278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEM4755815.1"
                     /translation="MVDVKRIDQEIRDFYYNRGTIVSEELIDAILYSIDGGGKRIRPV
                     LLLQIVEGFGVELQQAHYQVAAALEMIHTGSLIHDDLPAMDDDDYRRGRLTNHKKFDE
                     ATAILAGDSLFLDAFGLLSLADLPNQVLLELVQLMSLASGTFGMVGGQMLDMLGEGKK
                     LEIFDLINIHSNKTGRLLTFPFHAVGIITQQPSSVVGSLWQAGMLIGHAFQVRDDILD
                     VTADFDELGKTPRKDLAAEKATYPSLLGLEESKFIVQDSLNKAVAIFKELEEHNGFKG
                     QEVYQLIESLRING"
     gene            4156..4977
                     /locus_tag="U1087_001343"
     CDS             4156..4977
                     /locus_tag="U1087_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HEM4755816.1"
                     /translation="MAKERVDVLAFKQGLFETREQAKRGVMAGLVVSVINGERYDKPG
                     EKIDEGIELKLKGEKLKYVSRGGLKLEKALQVFDLAVEGQTTIDIGASTGGFTDVMLQ
                     AGAKQVYAVDVGTNQLAWKLRQDDRVISMEQYNFRYAELEDFELGQPSFASIDVSFIS
                     LSLILPALHRILVDGGQVVALVKPQFEAGREYIGKNGIVKDKAVHLKVLEDVTAMAIE
                     NGYSVKALNFSPVQGGHGNIEFLAYLEKTNEPVQIDKQEITNIVYQAHEEFKKDE"
     gene            4970..5395
                     /locus_tag="U1087_001344"
     CDS             4970..5395
                     /locus_tag="U1087_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine repressor"
                     /protein_id="HEM4755817.1"
                     /translation="MNKRERLEVIKDLVVRFPIDTQEEIVERLEAMGVNATQATVSRD
                     IKELGIIKVPSADKGYIYGLPKAGLVKVKSQNVFEVSVMDKMINLRLVPGSSAVVKRR
                     ILEQFQEHVFSVIADDDSILLIVTNEGIISQIEQTVRGW"
     gene            5398..7059
                     /gene="recN"
                     /locus_tag="U1087_001345"
     CDS             5398..7059
                     /gene="recN"
                     /locus_tag="U1087_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HEM4755818.1"
                     /translation="MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNL
                     MLGARATTDVIRHGAAKAEIEGLFSFENSRALEQILLEQGIEVADELIIRREILQNGR
                     SVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
                     YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDK
                     LLNHKQIADTLTNAYALLDNEDFSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYY
                     VVEDVTKRLSDVVDNLDFDGNRLLQLESRLDLLNTITKKYGGTVDDVLDYFSKISEEY
                     NLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELALVLEDIIRQELQDLYMEKA
                     RFQVRFTKGKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKE
                     GKTSIVFDEVDTGVSGRVAQAIAQKIYKIGQYGQVLAISHLPQVIAIADYQFFIEKIS
                     DEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG"
     gene            7153..7986
                     /locus_tag="U1087_001346"
     CDS             7153..7986
                     /locus_tag="U1087_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HEM4755819.1"
                     /translation="MSKIKIVTDSSTTIEPSLVEELNITVVPLSVMVDGVVYSDNDLK
                     EGEFLELMRGSKNLPKTSQPPVGLFAETFADLAKDGSQIIAILLSHALSGTVEAARQG
                     ATLSGADVTILDSSFTDQAEKFQVVEAARMAQAGASKEEILAAIETVKEKTELYIGVS
                     TLENLVKGGRIGRVQGMLSSLLNIRVIMEMKDHQLTPIVKGRGNKAFKKWLEEFTATL
                     ADKKVAEIGISYSGTADFANEMKSQLQEYVSKEVSVLETGSIIQTHTGEDAWAILIRY
                     E"
     gene            7979..8812
                     /locus_tag="U1087_001347"
     CDS             7979..8812
                     /locus_tag="U1087_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEM4755820.1"
                     /translation="MNNRKLIQGFVFFFLAILGSIFLFHQLIPVASSRISRQELTVSE
                     KISFRYVALGDSLTEGVGDTTGQGGFVPLLAQSLTNDYGYEVDYKNFGVSGNTSNQIL
                     KRMKEDGELISYLKTADLLTLTVGGNDLRKAIIKNIANLKVSTFDKPAKDYGKRLDTI
                     IKTARKNNPNLPIYVVGIYNPLYLNFPELTEMQTIVDNWNTMTEQITEKYQHVYFVPI
                     NDLLYKGLEGEAGISQNGSQVTNNLLYEEDSFHPNNTGYEIMKKAILERMNETTESWE
                     P"
     gene            8784..9380
                     /locus_tag="U1087_001348"
     CDS             8784..9380
                     /locus_tag="U1087_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YpmS family protein"
                     /protein_id="HEM4755821.1"
                     /translation="MRPRKAGNLNIWKWLFLAQLALLIGCGIVLYTRIQTDREDLTKL
                     VQTSTEDTKVGTFSTNREQLNQTLTNYLKEYQTEEFSYQLFVTSQQVVFEGSYQIFGV
                     TIPLYIYFQPSKIEDGSILLRITEISVGSLSLPKAEVLAYLQKNYKLPAFVKIDSEQA
                     QVQVQLTELKNKFGLYGKANTIDLYNDQFIVDIYRKRQ"
     gene            9470..9745
                     /locus_tag="U1087_001349"
     CDS             9470..9745
                     /locus_tag="U1087_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002950996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEM4755822.1"
                     /translation="MANKQDLIAKVAEATSLTKKDSAAAVDAVFGAVADYLAAGEKVQ
                     LIGFGNFEVRERSARTGRNPQTGAEIKIAASKVPAFKAGKALKDAVK"
BASE COUNT         3066 a         1778 c         2260 g         2768 t
ORIGIN      
        1 gattttgaaa aacggcggtt cagaatttgg tgttcaaaat actaaattat taacagttgt
       61 acatattcta ttttatttat catgtttggt tgaagcagta gtgcgacacg ccaagtttga
      121 tacgcttagt agcttaggtt tgatattctt gctgttttca atgggaatgt tattttgggt
      181 aacacgattg ttaggtgata tttggacagt taagctcatg ttggtaaaag atcatcgttt
      241 tgttgatcat tggttgtttc gtgttgtaaa gcatcctaac tatttcctaa atattatacc
      301 agaattaatc ggtttagctt tattgtgtca tgcaacatat agttttctca tcttattccc
      361 agtctacatg gttatcttat acagacgtat tcacgaggaa aataatttgt tgaaaacagt
      421 gattattcca aacggaactg tgcagtctgc agcagagata actggaaata attaaagttt
      481 gctaaataat aattgtgata ttgtttgaaa ctaggatacc gctctaatta gagttgatga
      541 gtaagtttac atgattcagt tttcatattt aaaagtggta ccgtatgtgt aaattggctt
      601 ctgtcagttg tatattataa agaaactctt gcaaaagtgt atgttgcaag agtttcttta
      661 ttgctacgag aggctatgga tgtttacggt ttctctacgg agaatgtatc ggcgtgagca
      721 aggtcaccat aggtataacc gagattaaac cattttttcc tttgctcaga agtgccgtgg
      781 gtaaaactgt ctggaacagt acgaccgtag gcttcctgtt gaagagtgtc gtcaccaact
      841 gcgtgggcag cattcatagc ttcgtcaata tcaccagcat ccaagatgcc gtgtccatca
      901 acatatttgg cccaggctcc tgcataatag tcagcttgca attctaagcg aacatttagc
      961 gcattgcctt ccttatcgga tagttgagcc cgtttttgat ggtaggcccc aagaacttct
     1021 aattcatttt ggacatggtg accaacttca tgagcgatga cataagccat ggcaaagtca
     1081 ccagcagcct tatacttgct agacaattct tgatagaaag aagtatcaat ataaatcttg
     1141 cggtcagcag agcaatagaa tggaccggct tgggcggaac ccactccaca tccagtttgg
     1201 gtctggttag tatagaaaac catagtcggt gcattgtagg ttaaaccatt ggctttaaat
     1261 tcttggaccc aaaaatcttc tgtcgatcct aaaaccttac tcatgaattc agcatctgca
     1321 tcagacatat ctgtaccagt tgttgtgact tgactcgatt ggtaaggatt agtccttgtt
     1381 gagggggaaa gcagcccacc aaggtttgac atgcctccga aggctactaa aaggacaaga
     1441 acaagtagtt ttcctttcca accaagtcgt gaaaagagta gtcccaatag aacatttcct
     1501 ccagatgaac cagacaagaa agatgagtta gaactggatt gtcccctgcg gtcctcaatg
     1561 ttagaacttt ttcgtaaatc atcaattttc atataaatct ccttagaacc tgtcaacaag
     1621 ttcttatttt ctcacaagct attatatagt aaaacgcaga aaaaacacag gaaagctatc
     1681 ggaaataata ggcatagttc tgtataaaag tgcaaaattt ggtataatag tagggataca
     1741 atatagaagg agtggacatg gttgaatatt tatcggttag tcatctaact aagtatttaa
     1801 aattaaagtt tgaccgcgat ccgtatttgg agaaggtgta tttgacaggt caagtgtcca
     1861 acttccgtaa acgccctagc catcaatatt tttcgctcaa ggatgacaag gcagtcatcc
     1921 aagcgaccat gtgggcaggc gtctataaga atctgggctt tgagcttgaa gagggaatga
     1981 aaatcaatgt cattgggcgc attcagctct atgaaccaaa tggttcctat tccattgtca
     2041 ttgaaaaagc tgagccagat ggtattggag tcttggcaat caagtttgaa cagctcaaac
     2101 aagctctgac acaggaaggt ttatttaaag aagaattcaa gcaagccttg ccacggttta
     2161 ccaagaaaat cggtgtcatt accagtccga gtggagctgt tattcaggat attattacaa
     2221 ccgttagccg acgttttcca ggcgtagaga ttgttctcta tccgaccaag gtgcaaggag
     2281 atggggctgc tcaagaagtt gtcgccaata ttcaaagagc caatgaacgg gatgacttgg
     2341 atgttctgat tgttggccgt ggtggtggtt ctatcgaaga cctttgggca tttaatgaag
     2401 aaattgtggt tcgggctatt tttgaatccc gtattccaat catttccagc gtaggtcatg
     2461 aaactgatac gactctggct gattttgtag cagataaacg agctgccact ccaacagctg
     2521 ccgcagaatt agcaacacct gtgaccaagg cagacttact gggctacctc aatcagcagg
     2581 aaaatagagc ctatcaggcc atgaccaatc gtttgaaatt cctaagaggc cagcttgaga
     2641 aaattagcca gtcagtcatg ttccgccagc ctgaacgctt gtatgatggt tatttacaaa
     2701 aattagaccg cttgaccaat caattgcaga cacggatgaa agaactctac agccagcaga
     2761 aacaggctag tctcctacta cagcaacgat tacaaggtgt gcatccaggt cgtaaagtag
     2821 agagtttcca agagagaatt atccagcaag aacgactctt gaagagcaat atggctaata
     2881 tctatgacaa taagatggcc aaggcggaca agctgattga ggccttgact atgctggata
     2941 ccagtcgcat cgtggcccgt ggctacgcca tgattcgtca agatggtcgg gtgatcgata
     3001 gtgtagaaaa tgtacaaatt ggtgaaaacc taaccatcca gatgaaggat ggtcaacttg
     3061 atgtggaggt aaaacatgtc caaacagacg aaaacatttg aagaaaatct agctgaatta
     3121 gaaggaatcg taaccaaatt agagcgaggc gatgtggctc tggaagaagc acttgctgag
     3181 tttcaaaaag ggatggttct atcgaaagat ctacaaaaga cactagctgc agctgaaaag
     3241 accttggtca aggtcatgca ggcggatggc agtgaagcgg agatggatta atggttgatg
     3301 tgaaacggat tgatcaggaa attcgcgatt tttattacaa ccgtggaaca attgtttcgg
     3361 aagaattaat tgatgcgatt ttgtattcga ttgatggtgg tggaaagcgg attcgaccgg
     3421 tcttattgct tcaaatcgtg gaaggatttg gggtagaatt acagcaagcc cactaccaag
     3481 tggccgctgc cttagagatg attcatacgg gaagcctgat tcacgatgat cttcctgcca
     3541 tggatgatga tgattaccgt agaggtcgac tcaccaatca taagaaattt gacgaagcga
     3601 cagctatttt agcaggcgat agcctctttt tggacgcttt tggcctcctg tctctggctg
     3661 atttgccaaa ccaggtttta cttgaattgg tacagcttat gtcattagca tctggaacct
     3721 ttgggatggt cggtggtcaa atgctggaca tgctaggtga aggaaaaaaa ttggaaattt
     3781 ttgacctgat aaatatccat agcaacaaga caggtcgatt attgacattc ccatttcatg
     3841 cagtagggat tattacgcaa cagcctagtt ccgttgtcgg ttccttgtgg caagctggga
     3901 tgttgattgg tcatgccttc caggttcgag atgatatttt agatgtaacg gcagattttg
     3961 atgaattggg caaaacgcct cggaaagatt tggcggctga aaaagcaaca tatccaagct
     4021 tgttagggtt agaagagtcc aaattcattg ttcaggattc attgaataag gccgtggcca
     4081 tttttaagga attagaagaa cacaatggct ttaaggggca agaagtgtat caattgatag
     4141 aaagtttacg aatcaatggc taaggaaaga gtagatgtac tagcttttaa acaggggctt
     4201 ttcgagacgc gggagcaggc caaacgtggt gttatggctg gcttagttgt atccgtcatc
     4261 aacggggaac gctacgataa acctggtgag aagattgatg aaggaattga gctcaaactc
     4321 aaaggtgaaa aactcaagta tgtcagccgt ggcggtctga aattggagaa ggccttgcag
     4381 gttttcgacc tagcagttga ggggcaaacg acgattgata ttggagcctc aacaggtggc
     4441 tttacagatg tcatgttgca ggctggtgcc aagcaggtct atgctgtgga tgtcggtacc
     4501 aatcaactcg cttggaaatt gcgccaagat gatcgcgtga tcagcatgga acagtacaat
     4561 ttccgctatg ctgagttgga agatttcgaa cttggtcaac caagttttgc gtccattgac
     4621 gtcagcttta tctcattgag tctgattttg ccagcactcc atcgtatatt agtggatggt
     4681 ggtcaggttg tagccttggt taaaccacag tttgaagcag gtcgtgagta tattggcaag
     4741 aatgggattg taaaagataa ggcagttcac ttgaaagtcc tagaagatgt tactgcgatg
     4801 gctatcgaaa atggctattc agtcaaggcg ctcaattttt ctcccgttca aggaggtcac
     4861 ggcaatatcg aatttttggc ttatttagaa aaaacaaatg agccagtcca aattgataag
     4921 caggaaataa caaatatagt ctatcaagca catgaggaat ttaaaaagga tgaataaacg
     4981 agaacgatta gaagtcatta aagatttggt agtccgattt cctattgata cacaggaaga
     5041 aattgttgaa cgtctagaag caatgggtgt caatgcgaca caagcaacgg tttcacgtga
     5101 tatcaaggaa cttggcatta ttaaggttcc atcagcggat aagggatata tttatggttt
     5161 accaaaggca ggtcttgtta aggtaaaatc gcagaatgtt tttgaagtct cagtgatgga
     5221 taaaatgatt aatctccgtc tggtacctgg aagctctgct gtggtcaaac gccggatttt
     5281 ggaacaattt caagaacatg ttttttcagt gattgctgat gatgacagta ttctgctcat
     5341 tgttacaaac gaaggcatta tttcgcaaat cgaacagacg gttagagggt ggtagccatg
     5401 ttactagaag tgtccattaa aaacttcgcc attattgagc aggtatcact gaattttgaa
     5461 aacgggatga ccatcctatc tggtgaaaca ggtgcaggta aatccattat catcgacgcc
     5521 atgaacctga tgctaggggc gcgtgcgacg acagatgtta tcagacatgg ggccgccaag
     5581 gctgagattg aagggctttt ttcctttgaa aatagcagag ctctcgagca gattttgctt
     5641 gaacagggga ttgaagtagc tgacgagctc attatccgtc gtgaaatcct acaaaatggc
     5701 cgttcggtca gtcgtgtcaa tggacaaatg gtcaatttat ctgtcttgaa acagattggg
     5761 caatatttag tagatattca tggtcaacat gaccaggaag aattgatgaa gtcccaacac
     5821 catatccgtc ttttggacag tttcggagaa gatgaatttt ggagtcttaa agaccgttat
     5881 cagacaacct ttgatgctta ccgtagtctt cgcaaacgag ttcttgaaaa gcaaaaaaat
     5941 gagcaagaac acaaggcgcg gattgagatg ctagaatacc aaattgctga aatcgaagca
     6001 gcggatttga agtctggtga agatattcaa ctcaatcagg aacgcgataa actgctcaac
     6061 cacaaacaaa ttgcagatac actgaccaat gcctatgcac tgttagacaa tgaagatttt
     6121 tcaagcttga acaacctacg ctcagcaatg agtgacttgc aaagtctgga agaatttgat
     6181 ccagactaca aacagctctc ttctagtctg acagaagctt attatgtcgt tgaagatgtg
     6241 accaagcgtc tcagcgatgt ggtggataat ctagactttg acggcaatcg tctcttgcaa
     6301 ttagaaagtc gcctggattt gctcaatacc attacgaaga aatatggtgg aactgtcgat
     6361 gatgttttgg actattttag taaaatcagt gaagaataca atctattgac aggcaatgat
     6421 ttatctggtg atgatttgga agttcagctt aagaacttag agaaagaatt ggttgaacga
     6481 gcaggtcagc tcagccaatc acgccatgaa ttggctcttg ttttagaaga tattattcgc
     6541 caagaattgc aagacttgta tatggagaaa gctcgtttcc aagttcgatt tactaaagga
     6601 aaatttaatc gagaaggaaa tgaaacagta gaattttaca tctctaccaa cccaggtgaa
     6661 gacttcaaac cactggttaa ggtagcttct ggaggagaat tgtctcgctt gatgttggcc
     6721 attaagtcag cctttgcccg taaagaaggt aaaacttcta ttgtctttga tgaggtggat
     6781 acaggggtgt ctggacgtgt ggcccaggca attgcccaga aaatttataa aatcggacaa
     6841 tatggtcaag tattggcgat ttctcatcta ccacaagtca ttgctattgc agattatcag
     6901 ttctttattg agaaaatatc cgacgaacat tcgactgttt ctcgtgtccg tctcttgacc
     6961 aaagaagagc gtattgagga aattgccaag atgttagccg gtgacaaaat cacagatgca
     7021 gcccgtaatc aagcaaaaga attagtagaa aaaggttagg cgactagcct ttttgcttat
     7081 gtccaaagtt tattttttag ttaaaatttg ttataataga tggcaaaatt gaagagaatt
     7141 gtaggatgaa atatgtcaaa gattaagatt gttacggatt caagtacgac tatcgaaccc
     7201 agtttggtcg aagaattgaa tataacagtt gttccattat ctgtaatggt tgacggagtc
     7261 gtatactctg acaacgattt aaaagaagga gagttcttag agctcatgcg tgggtcgaaa
     7321 aacttgccaa aaacaagcca gcccccagta ggactctttg cggaaacttt tgctgacttg
     7381 gctaaagatg gcagtcagat tattgccatt ctcttgtcgc atgccttgtc agggacagta
     7441 gaagctgcta gacaaggagc aaccctttct ggtgctgatg tgacaatcct cgattcaagc
     7501 tttacagatc aggctgaaaa attccaagtt gtagaagcag cacgcatggc acaagctggt
     7561 gccagcaaag aagaaatcct tgcagctatt gaaacagtca aagaaaaaac ggaattatac
     7621 atcggtgtat caaccctaga aaatctagtc aagggtggtc gtattggacg tgttcaaggg
     7681 atgctgagta gcctactcaa tatccgtgtt atcatggaaa tgaaagacca tcagctgact
     7741 ccgattgtca agggacgagg caataaggcc tttaaaaaat ggctggaaga gttcacggca
     7801 actctagcag ataaaaaagt agccgagatt ggtatttcct attcaggaac ggctgatttt
     7861 gcaaatgaaa tgaagagtca attacaagag tacgtctcaa aagaagtttc tgtcttagag
     7921 acaggttcca ttattcaaac tcataccggt gaggatgcct gggctatttt gattcgttat
     7981 gaataacagg aagttgattc aaggctttgt tttctttttt ctggcaattc tagggtcgat
     8041 ttttctattt catcagctca ttcctgttgc ctcatctcgc atctccagac aagagcttac
     8101 cgtatcagaa aaaatcagtt ttcgatatgt ggcacttggt gattctttga cagaaggtgt
     8161 tggagataca actggacagg ggggctttgt tcccttgttg gctcaatctc taactaacga
     8221 ttatggttat gaagtagatt ataaaaattt cggagtttct ggaaatacca gtaatcagat
     8281 tcttaagcga atgaaggaag atggagagct gataagttac ttaaaaacag cagatctgtt
     8341 aactctgaca gttggtggca atgatttgcg caaggctatt attaaaaaca ttgccaatct
     8401 caaagtttca acttttgata agcccgcaaa agattacgga aaacgattgg atacgattat
     8461 taagacagcg cgtaagaata atccaaatct tcccatctat gttgtcggga tttacaatcc
     8521 actctacctc aattttcctg aattgacaga aatgcagaca attgttgata attggaatac
     8581 gatgacagaa cagataactg aaaaatatca acatgtctac tttgttccga tcaatgattt
     8641 gctctataaa ggattggaag gggaggctgg tattagtcaa aatggtagcc aagttaccaa
     8701 taatttactg tatgaggaag acagtttcca tcccaataat actggatatg agattatgaa
     8761 aaaagcgata ttggagagaa tgaatgagac cacggaaagc tgggaacctt aatatttgga
     8821 aatggttatt tttagcccag ttggctttat tgattggttg cggaatagtc ctctatacac
     8881 ggattcaaac agatagagag gatttaacaa agctcgttca gactagtaca gaagatacca
     8941 aggttgggac cttctccact aatagggaac agctcaacca aaccctcact aactatctaa
     9001 aagagtatca gacggaagag ttttcctatc aattattcgt aacgagtcag caagttgttt
     9061 ttgaaggcag ctatcagatt tttggtgtga ctatcccact ctatatttat tttcaaccta
     9121 gcaaaattga agatggcagt attttgttac ggataacaga aatatcagtt ggaagtttat
     9181 ccttgccgaa agcagaggta ttagcttatt tacaaaaaaa ttataaacta cctgcctttg
     9241 taaaaataga ctcagaacaa gcgcaagtac aggttcaact gacagaactg aagaacaaat
     9301 ttggtctgta tggaaaggcg aatacgattg atttgtacaa cgaccaattc attgttgata
     9361 tctacagaaa aagacagtaa aatagcatta aaaacttgac caaacgccta aaattcggta
     9421 ctatatagaa gtgagtaata actcagaaaa ttattggagg acttagcaaa tggctaataa
     9481 acaagatttg attgcaaaag ttgcagaagc aacttcattg actaaaaaag actcagcagc
     9541 agctgttgat gcagtattcg gagcagtagc agactacctt gcagctggtg aaaaagtaca
     9601 attgatcggt ttcggtaact ttgaagttcg tgagcgttca gcacgtacag gccgcaaccc
     9661 tcaaacaggt gcagaaatca aaatcgcagc atcaaaagtt ccagcattca aagctggtaa
     9721 agctcttaag gatgcggtaa aataaaacag tctgggaata gactgtttta tccctcgctt
     9781 aaaaacaaaa gagcgaggct aagcatcaaa aagcccgtca tatcaagctt tttagcttgt
     9841 gtgatgggct tttttctgtg ttttggggct cc
//
LOCUS       DASFRC010000080         9759 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.080, whole genome shotgun sequence.
ACCESSION   DASFRC010000080 DASFRC010000000
VERSION     DASFRC010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9759)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9759)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9759
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.080"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            171..359
                     /locus_tag="U1087_001350"
     CDS             171..359
                     /locus_tag="U1087_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3272 domain-containing protein"
                     /protein_id="HEM4755823.1"
                     /translation="MKLPQFLFLAITTILAVYFMNASILTGDFLIAGIYAFIAYRNLH
                     FAYKVTKFIRLVEKQTKK"
     gene            complement(325..1281)
                     /locus_tag="U1087_001351"
     CDS             complement(325..1281)
                     /locus_tag="U1087_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional biotin--[acetyl-CoA-carboxylase]
                     synthetase/biotin operon repressor"
                     /protein_id="HEM4755824.1"
                     /translation="MKTYQKIYLLLKEKEDYMSGEDLAQELGISRTSVWKAIRQLETH
                     GLTIEAARNRGYKLADGDLLLPELISQELQLPVHLNMDSDSTQLDAKQGIESGHTSPA
                     LYLAPYQNKAKGRFGRPFYASKSGGIYMSLRLSPNVPFLEFKPYTILAAAAVVKAIQS
                     LCDLDVQIKWVNDIYLGHKKVAGILTEAISSMENQRVTDVIIGVGINVRIDDFPKELQ
                     QSAGNLFEEQPPFTRNQLITAIWKAFLETDEKELIALYKEKSLVVGQQVSFVENQVEF
                     KGTAIAVTDTGNLVIQLDNGKAKIISSGEISLTSWSASPPNE"
     gene            1346..2380
                     /locus_tag="U1087_001352"
     CDS             1346..2380
                     /locus_tag="U1087_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M42 family metallopeptidase"
                     /protein_id="HEM4755825.1"
                     /translation="MKTLDYIVTLTNTPSPTGFTTDIMNYIKAEVESFGYAASKTAKG
                     GVLVTVPGENDQEHRMVTAHLDTLGAMVRAVKPDDRLKMDLVGGFGYPSIEGENCLIH
                     CAKNGKTFTGTILMHQTSVHVYRDASTAERNQTNMEIRLDEKVTNADETRALGIEVGD
                     FISFDPRTVVTETGFIKSRHLDDKVSAAILLHLLKVYKEEGITLPYTTHFYFSNNEEI
                     GYGANSSIPAQVVEYLAVDMGAMGDDQQTDEYTVSICVKDGSGPYHYELRQHLVALAE
                     RDGIPYKLDIYPYYGSDASAAMRAGADVKHALLGAGIESSHSYERTHLDSVVATERMV
                     DAYLKSAMVD"
     gene            2382..3119
                     /locus_tag="U1087_001353"
     CDS             2382..3119
                     /locus_tag="U1087_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755826.1"
                     /translation="MNETRFLELFNDLDKVLRKVCGVADGEYADVGSMLTKAKELTRH
                     NPVEANWDKLYVARQLRNLMVHEKRTGLKEVAQPSQELITVLEKVIAQYQEPITIADY
                     LQKTQKIKPVIFEAKDKLIKALEIVEQEHFSKFPIFSDKVYQGLVSDKGLTNWLAKAS
                     KETGSIREKLVEASLEDVLACEEDSIQVIVLPITAHLYQVINHFEGRKRTTILVSRQA
                     SGKLHSPEDLVGIVTAQDLAEIYGMVD"
     gene            3138..3605
                     /locus_tag="U1087_001354"
     CDS             3138..3605
                     /locus_tag="U1087_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000138511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine/deoxycytidylate deaminase family
                     protein"
                     /protein_id="HEM4755827.1"
                     /translation="MSTNRLAWDEYFAAQALLIANRATCKRAKVGAVLVKDNKVIATG
                     YNGSVSGTEHCLDQECLMIDGHCARTLHAEVNAILQGAERGIPKGFTAYVTHFPCLNC
                     SKQLLQVGCKRVVYINEYRMDDYAQYLYKEKGCELVHLPLEVVKQAIADAEFI"
     gene            4003..5193
                     /locus_tag="U1087_001355"
     CDS             4003..5193
                     /locus_tag="U1087_001355"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HEM4755828.1"
                     /translation="MSERKLFTSESVSEGHPDKIADQISDAILDAILAEDPDAHVAAE
                     TAVYTGSVHVFGEISTTAYVDINRVVRDTIAEIGYTKGEYGFSAESVGVHPSLVEQSP
                     DIAQGVNEALETRQDASQDPLDLIGAGDQGLMFGFAVDETPELMPLPISLSHKLVRRL
                     AELRKSGEIAYLRPDAKSQVTVEYDEDNQPVRVDTVVISTQHDPEVSQEQIRQDVIER
                     VIKEIIPAHYLDDQTNYFINPTGRFVIGGPQGDSGLTGRKIIVDTYGGYSRHGGGAFS
                     GKDATKVDRSASYAARYIAKNIVAAGLAKKAEVQLAYAIGVAHPVSVRIDTFGTSTVA
                     ESKLEAAVRQIFDLRPAGIIQMLDLKRPIYKQTAAYGHMGRTDIDLPWEKLDKVEALK
                     TAVL"
     gene            5224..5835
                     /locus_tag="U1087_001356"
     CDS             5224..5835
                     /locus_tag="U1087_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEM4755829.1"
                     /translation="MKALIVFAHPRKESFTHALVDRVAEALLENGAEVVIRDLYEIGF
                     DPVLHGEDTIHIEDGKFVRQATVFPADVQVEMDLIAESDLLVYIFPSWWNGMPAIMKG
                     YVDRVFQHGFAYSFESDEPRKLFSTKKAIFFTPTGQPQNADGSLTPIDQAMKTLTSEW
                     LFNSNGAQVIDHIFYGRVPYLTREELELYLVDAREQIQRIFHK"
     gene            5986..7245
                     /locus_tag="U1087_001357"
     CDS             5986..7245
                     /locus_tag="U1087_001357"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001226236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEM4755830.1"
                     /translation="MRKIVINGGKTLKGSVTVSGAKNSVVALIPAIILADGIVTLDGV
                     PAISDVDSLVDIMETMGATVKRDGETLEIDPRGVKDMPMPFGKINSLRASYYFYGSLL
                     GRFGQAVVGLPGGCDLGPRPIDLHLKAFAAMGAETTYEGDYMRLATNGQRIQGAHIFM
                     DVVSVGATINTILAAVKAEGRTVIENAAREPEIIDVATLLNNMGARIRGAGTDIITIE
                     GVDSLKGTRHQVIPDRIEAGTYIALAAAVGEGIRIDNVLYEHLESYIAKLEEMGVRMT
                     ISEDSIFVEKQEKLKAVSVKTSPYPGFATDLQQPITPLLLKAEGTGTIVDTIYEKRVG
                     HVQELANLGAKISTRNNHIAFEGPNQLTGTSVKATDLRAGAAMVIAGLMAQGRTEITN
                     IEFILRGYSNIIDKLTELGADIQLIED"
     gene            7340..7912
                     /locus_tag="U1087_001358"
     CDS             7340..7912
                     /locus_tag="U1087_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM4755831.1"
                     /translation="MTLWTRLAKFAYFETDRLYLRPFSFEDGESFYEIVSNPENLPFI
                     FPALEDRNIAFSTMVEKFMRSPLGNWALVDKYSERMIGALCFEKVDERQLSAELSYFL
                     KKDYWRRGLMTEAVRTLVYLAFYEFGLRELVIVTHEENVASQMVAKKAGLVQVAQYRG
                     SDRYSHKTRNYLKFSLKRAEFSLEMYEENQ"
     gene            7909..8769
                     /locus_tag="U1087_001359"
     CDS             7909..8769
                     /locus_tag="U1087_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013903404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl aminopeptidase"
                     /protein_id="HEM4755832.1"
                     /translation="MITIKSQREIDAMNRAGDVLAGIHIGLREIIKPGVDMWEVEEYV
                     RKTCKEKNVLPLQIGVDGELMDYPYATCCGLNDEVAHAFPRHYKLKEGDLLKVDMVLS
                     EPLDKAVVDVSKLNFNDVKAMKKITQTYRGGCADSCWAYAVGQVSEEVQNLMDVTKEC
                     LYRGIEQAVVGNRIGDIGAAIQEYAEGLGYGVVRDLVGHGVGPTFHEEPMVPHYGTKG
                     RGLRLREGMVLTIEPMINTGTWEIDTDMKTGWAHKTLDGGLSCQYEHQFVITKDGPVI
                     LTSQGEEGTY"
     gene            8817..9746
                     /locus_tag="U1087_001360"
     CDS             8817..9746
                     /locus_tag="U1087_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HEM4755833.1"
                     /translation="MKKTKIVEGLKTFCSTFFSFYRSADSDVTSVAVAYYLLISIFPI
                     LLTLANLLPYYPFDVDMILSVVAEFVPDKLYPSVSSFITSVLTKPSSSWLGISILTTL
                     WTLSRSMTILQKAFNKAYGINEHRDFIIGHLIGIFLGIGLQVIILLSITLLTFGQAVF
                     SYINKLVPIEDAWLKGLLSQTQLVGLLALFAALVMLYFFLPNVRIKKVRYVFPGTLFV
                     LLTMTSIGKLFSIYVDNYANKLLDFRIVTAVVFLVFMLWFIFMAQVLIIGAMINATVQ
                     SMQVEEFHARDGDIVSILNRLKARFTAIDKEWE"
BASE COUNT         2710 a         1727 c         2358 g         2964 t
ORIGIN      
        1 aatagttttg atagatattt tatactattt tcaatcctaa atatttttca tatctcctta
       61 agaaagcacc aattagattg gtgttttctt gtttagaaaa gactcgaaac ctatcaagaa
      121 agcatataaa aattcagcca gttgactgaa tttttggtat aatctatttt atgaaacttc
      181 cacaatttct ttttttagcc attacaacta ttttagctgt ttattttatg aatgcatcga
      241 ttttgacagg agatttcttg attgcaggta tctacgcctt tatcgcctat cggaatcttc
      301 attttgctta caaggtgact aaatttattc gtttggtgga gaagcagacc aagaagtaag
      361 gctgatttct ccgctggaga taatttttgc tttgccgtta tctaactgga taaccaggtt
      421 tcctgtatca gtaacagcga tggctgtacc cttaaattca acttgatttt ctacaaagct
      481 cacttgttgg ccaacgacaa gtgatttttc tttgtaaagg gcaattagtt ccttctcatc
      541 ggtttctaag aaggctttcc agatggcagt aatgagttga ttgcgggtaa atggtggttg
      601 ctcctcgaaa agatttcctg cagattgttg taattcctta gggaaatcgt ctatgcggac
      661 attgatgccg acaccgataa tgacatcggt tacccgttgg ttttccatag aagagatagc
      721 ctcagtgagg atgccagcga cctttttgtg tccgagatag atgtcattga cccacttgat
      781 ttggacgtcc aagtcgcaaa gagattgaat ggccttcaca acagcagctg cagctaaaat
      841 ggtgtagggc ttaaattcta gaaaaggaac attgggagag agacgaagcg acatataaat
      901 gccacctgac ttggatgcat aaaagggtct cccaaatcgt cccttggctt tattctgata
      961 gggagctaga tatagggcag gactagtatg acctgattca ataccttgtt tggcatctag
     1021 ctgggtggag tcgctatcca tattcagatg gacaggtagt tgaagctcct gagagattaa
     1081 ttcgggtagg agtaaatccc catcggccaa tttgtaacca cgattgcggg cagcctcaat
     1141 agttaaacca tgcgtttcta actggcgaat ggctttccaa actgaagtcc gagaaatacc
     1201 caattcctgt gccaaatctt ctccgctcat gtagtcttct ttttctttta atagtaaata
     1261 aatcttctgg taggttttca taccttcatt atagcaaaaa aatgtcctaa aacgtgatat
     1321 aatagtttaa aataaggagg ttttcatgaa gacacttgat tacattgtta cattgaccaa
     1381 cactccgtcg ccaactggtt ttacgacgga tattatgaat tacatcaagg cagaggttga
     1441 aagtttcggc tatgctgcta gtaagaccgc taaaggtggt gttttggtga cagttccggg
     1501 ggaaaatgat caggaacacc gcatggtgac tgctcacctg gacacactgg gggccatggt
     1561 tcgtgcagtg aaaccggatg accgactcaa aatggatttg gtgggaggat ttggataccc
     1621 ttctattgag ggagaaaatt gtttgattca ttgcgctaaa aatggcaaga ctttcacagg
     1681 tactattctc atgcaccaga cctctgtcca tgtctaccga gatgccagca cagccgagcg
     1741 aaaccagacc aatatggaaa ttcgtttgga cgaaaaagtg accaatgcgg acgagacgcg
     1801 ggccttgggt attgaagtcg gagattttat ctcctttgat cctcgtaccg tcgtgacaga
     1861 aactggcttt atcaagagtc gtcacttgga tgataaggta tccgcagcta tcttgcttca
     1921 tctattgaag gtatataaag aagaggggat tactctgcct tatacgacac atttctattt
     1981 ttcaaacaat gaagagattg gctacggtgc caactccagc attcctgctc aggtggttga
     2041 atatttggca gtcgatatgg gggcaatggg agatgaccag cagacggatg agtacacggt
     2101 ttctatctgt gttaaagatg gttcaggtcc atatcattac gaacttcgtc agcacttggt
     2161 agccttggca gagagggatg gtattccata taaattagac atttatccat attatggttc
     2221 cgatgcttcg gcagctatgc gagcaggtgc agatgttaag catgccctat tgggggctgg
     2281 tattgagtct agccattcct atgaacggac gcatttggat tctgtagttg cgactgagcg
     2341 gatggtagat gcctatttga aatcagcaat ggtagattaa gatgaatgaa acccgttttt
     2401 tagagttatt caatgacttg gataaggtct tgcgtaaggt gtgcggtgtt gcggatgggg
     2461 aatacgcaga tgtaggctct atgttgacca aggcaaagga attgacgcga cataatcccg
     2521 ttgaggcgaa ctgggataaa ctctatgtgg ctcgtcagtt gcgtaatctc atggttcatg
     2581 agaaacgaac aggtttgaag gaagtagccc aaccttcgca ggaattaatc actgttttgg
     2641 aaaaagtgat agcccagtac caagaaccga ttaccattgc cgactatttg caaaagaccc
     2701 agaaaattaa gccggttatt tttgaggcca aggacaaatt gataaaggct ttagaaattg
     2761 tggagcaaga gcatttttct aagtttccta ttttttctga caaggtttat caaggtctgg
     2821 tttctgacaa gggattgaca aattggttgg ctaaggcaag caaggaaacg ggctctatac
     2881 gtgaaaaatt ggtggaagct agtcttgaag acgtactagc ttgtgaggaa gatagtattc
     2941 aggtgattgt tctaccaata acagcccatc tttatcaggt aattaatcat tttgaggggc
     3001 gtaagcgcac aaccatccta gtcagtcgtc aggcgagcgg gaagcttcat tcgccagagg
     3061 atcttgttgg tattgtcaca gcccaggact tggcagagat ttatgggatg gtggattgag
     3121 tggagaaagg agaaatcatg tcaacaaatc gtttagcttg ggatgagtat tttgcggctc
     3181 aggcgctttt gattgccaat cgggcgacct gtaagagagc aaaggtcggt gcggttttgg
     3241 ttaaggacaa taaggttatc gcaacaggct acaatggttc tgtttcagga accgaacatt
     3301 gtttggatca ggaatgcctt atgattgatg gtcattgcgc tagaaccttg catgcggaag
     3361 tcaatgccat tttacaagga gcggagcggg gaattccaaa aggttttact gcctatgtga
     3421 cccattttcc ctgtctcaac tgctccaagc aattgttaca ggttggttgt aagcgggttg
     3481 tttatatcaa tgaataccgc atggatgact atgctcagta cttgtataaa gaaaagggct
     3541 gtgagttggt tcatttgcct ctagaggtgg ttaaacaggc aattgcagat gccgaattta
     3601 tctaatgatt ctgtaggaga gtggttgtat agaacaaccc tctttatttt taagaaaatg
     3661 ctaggatagt cggtcaatct atgctatact agaaacgtta ttaagtcccg aaaaggtagt
     3721 ttatagacta gttaatattt gcagaaacac ttgaaacaca attaaagaag ctggtaacat
     3781 tgaatagtaa gcgtaaaaac tttactacac ttcagtcacc attttcttca aataaggctg
     3841 atttcataca gtctggtatt gtctttctcg ttgggtacct ggaaattttc ctttgcttaa
     3901 gacaggtgtc tttcgcaaag aactagtctt cgactagttc tttgtaacct tagtaacccg
     3961 ctaggtttct agcatatatt ctattttaag ggggacattt ttatgtcaga acgtaagttg
     4021 tttacgtctg agtcagtatc ggaaggacat ccggataaga ttgctgacca gatttcagat
     4081 gctattttgg atgctatttt agcagaggat ccagatgcgc acgtagcggc agagacggct
     4141 gtttatacag gtagtgttca tgtgtttgga gagatttcaa ccactgccta tgtggatatt
     4201 aaccgtgtgg tacgtgatac gattgcggag attggctata caaaaggtga gtatggtttt
     4261 tcagctgagt cggttggggt tcatccgtca cttgtagagc aatcgccaga tattgcccaa
     4321 ggcgtcaatg aagccttgga aactcgtcaa gatgctagtc aagatccatt ggatttgatt
     4381 ggtgcaggtg accaggggct catgtttggt tttgcagtag atgaaacgcc tgaacttatg
     4441 ccgttgccaa tttcacttag tcacaaattg gtgcgtcgtt tggccgagtt gagaaaatct
     4501 ggtgaaattg cttatctccg tccagatgct aagtcacagg taacagttga atacgatgaa
     4561 gacaatcaac ctgttcgtgt ggatacagtc gttatttcga cccagcatga tccggaagtt
     4621 agccaggagc aaattcgtca ggatgtcatt gaacgtgtga ttaaggaaat cattccagct
     4681 cattatctgg atgaccaaac caactacttt atcaacccaa ctggtcgctt tgtcattggc
     4741 ggacctcaag gggactctgg tttgacaggc cgtaagatta tcgttgatac ctatggtggt
     4801 tattctcgtc atggcggcgg tgccttctct ggtaaggatg cgaccaaagt ggaccgttct
     4861 gcatcttatg cggcacgcta catcgcaaaa aatatcgtcg cagctggttt ggctaaaaag
     4921 gcggaagttc aattggctta cgctatcggt gttgctcacc cagtttcagt tcgcatcgat
     4981 acctttggta cgagcacagt agcggaaagt aaactagaag cagctgttcg tcagattttc
     5041 gatttgcgcc cagctggtat tattcaaatg ttggatctca aacgtccgat ttacaagcaa
     5101 actgcagcct atggacacat gggacgtacc gatattgatc tcccatggga gaaattggac
     5161 aaggtggaag ccttgaaaac tgcggttttg taatgaaata gttatccatt tagtgagaag
     5221 tttatgaaag cgttaattgt ctttgcacac cctagaaaag aaagctttac acatgctttg
     5281 gttgatagag tggcggaagc tctgctagaa aatggagcag aagttgtcat ccgagattta
     5341 tacgaaatag gattcgatcc cgtgttacat ggagaagata ccattcatat tgaggatggt
     5401 aaatttgtac gtcaggcaac agtttttcca gcagatgttc aagttgaaat ggatttgatt
     5461 gccgaaagcg acttactagt ctatatattt ccgagttggt ggaatggaat gcctgctatt
     5521 atgaaagggt acgtagaccg tgtatttcaa catggctttg cttacagttt tgaatctgat
     5581 gaaccgcgta aattattttc tactaagaaa gctattttct ttacgccaac agggcagcca
     5641 caaaatgcag atggaagtct gacaccgatt gatcaagcga tgaaaaccct gacctcagaa
     5701 tggctcttca atagcaacgg tgctcaagtc attgaccata tcttctatgg gcgagtacct
     5761 tatttaacga gagaagagct ggagttgtat ctcgtggatg caagggagca aattcagaga
     5821 atttttcata aatgatgaag agagattcac taatagtata taaatatgaa ggactgagct
     5881 cattggctcg gtccttttgc atgctatata actagctttt tccaagactt tatgatagaa
     5941 taaaacgtat gcctttttag gcaaattaag aaagtgaatg ttagtatgag aaaaattgta
     6001 attaatggtg gaaaaacact gaaagggtcg gttaccgtta gtggtgcaaa aaactcagtt
     6061 gttgctctta ttccggccat tattcttgca gacgggattg ttactctgga tggagtacct
     6121 gcaatctcgg atgtagatag cttagttgat attatggaaa caatgggcgc gacggtcaag
     6181 cgtgatggtg aaaccttgga gattgaccct cgtggtgtaa aagacatgcc tatgccattt
     6241 ggcaaaatta atagcttgcg tgcatcctac tatttttacg gttccctcct tggtcgcttt
     6301 ggtcaagctg ttgttggctt gccaggtggt tgtgatttgg gaccgcgtcc gattgatttg
     6361 cacttgaaag cattcgcggc aatgggagct gagacaacct atgaaggtga ctatatgcgc
     6421 ttggcaacta atggtcagcg tattcaaggg gcacatatct tcatggatgt tgtcagcgtc
     6481 ggtgcgacaa ttaatactat cttagcagct gtcaaagcag aaggccgtac agttattgaa
     6541 aatgcggcgc gtgaacctga aattattgat gtggcaactt tgcttaataa tatgggggca
     6601 cgtatccgtg gtgcgggtac agatattatc accattgaag gcgtagacag tctaaaagga
     6661 acacgccatc aagtgattcc agaccgtatt gaagcaggga cttatattgc ccttgctgct
     6721 gctgttggtg aaggtattcg tatcgataat gtcctttatg aacacttaga gagttacatc
     6781 gctaagttgg aagaaatggg tgttcgcatg accatttctg aagatagtat ttttgttgaa
     6841 aagcaagaga aattgaaggc ggtaagtgtg aaaacttcac cttatccagg ttttgcgaca
     6901 gacttgcagc aacccattac tcctttattg cttaaggcag aagggactgg tacgattgtt
     6961 gatacgattt atgaaaaacg tgttggtcat gtgcaggagc ttgcaaatct tggagcaaaa
     7021 atctctactc gtaacaacca tattgccttt gaaggtccaa atcaactgac tggtacatct
     7081 gttaaagcta ccgatttgcg tgcgggagcc gcaatggtta tcgctggttt aatggctcaa
     7141 gggcgtacag aaattacaaa cattgagttt attctacgtg gttactcaaa tattattgat
     7201 aagctgacag aattaggtgc agatattcag ttgattgagg attagagagt ctaattgaga
     7261 actactttct caaaacgtaa acgatttaaa aacaaaacaa tctggggctg ggagtaattc
     7321 tcagcccctt gggtacacta tgacactttg gacaagacta gcgaagtttg cttactttga
     7381 aacggaccgt ttgtatttac gaccattttc ttttgaagat ggagaaagtt tctatgaaat
     7441 tgtatcaaat cccgaaaatc ttccttttat ctttccagct ttggaggaca gaaatattgc
     7501 tttttcgaca atggttgaaa aatttatgcg ttcaccattg ggaaactggg ctttagttga
     7561 taagtattcg gagaggatga ttggtgcgct ttgctttgaa aaggtagatg aacgtcaact
     7621 ttctgcggag ctcagctatt tcctaaaaaa agactactgg agaagaggct taatgacgga
     7681 agcagtgagg actttagttt atctagcttt ttatgagttt ggtctgaggg agctggttat
     7741 tgtcacccat gaggaaaatg tggccagtca gatggtggcg aaaaaagctg gtttggtaca
     7801 ggttgcgcag tatcgcggaa gtgaccgcta tagccataaa acaagaaatt atctaaaatt
     7861 tagcttgaag agggctgaat ttagtttaga aatgtatgag gagaatcaat gattaccatt
     7921 aaatcacaac gagaaattga tgcaatgaac cgtgctggag atgttctggc tggtattcat
     7981 attggtttgc gagagattat caagccaggt gtggacatgt gggaagtaga ggaatatgtc
     8041 cgtaaaacgt gtaaggaaaa gaatgttttg ccactccaaa ttggtgttga tggagaattg
     8101 atggattatc cttatgcgac ttgttgtgga ttgaatgacg aggtcgctca tgcttttccg
     8161 cgtcattaca aacttaaaga aggtgattta ctgaaggttg atatggtttt gagcgagcct
     8221 ttggataaag cggtagttga tgtttctaag ctcaacttta atgatgtcaa ggctatgaag
     8281 aaaatcaccc agacttatcg cggtggttgt gcggattcct gctgggctta tgcggttggt
     8341 caggtctctg aggaggttca aaacttgatg gacgtgacta aggaatgttt gtaccgcggt
     8401 atcgagcaag cagttgttgg caatcgtatc ggtgatattg gtgcagccat tcaagaatat
     8461 gcagaaggtc ttggctacgg tgttgttcgt gacttggttg ggcacggcgt tggaccaact
     8521 ttccatgaag agccgatggt tcctcattat ggaactaaag gtcgtggtct tcgcttgcgt
     8581 gaaggtatgg ttttgactat cgagcctatg attaatacag ggacttggga aatcgatacg
     8641 gatatgaaga ctggctgggc tcacaaaaca cttgatggtg gcttgtcttg tcaatacgaa
     8701 caccaatttg tcatcaccaa agatggaccg gttattttga ccagtcaagg tgaagaaggg
     8761 acctattaat tctcggtgtg gtcgtgaata atagatgaat gaggaaggag gagagaatga
     8821 agaaaaccaa aatagtcgaa ggtttgaaaa cattctgctc aaccttcttt tctttttatc
     8881 gttctgctga tagcgatgta acaagtgttg cagtagccta ctatttgtta atttctattt
     8941 tccctattct tctaactctc gcgaatttac tgccatatta tccatttgat gtggatatga
     9001 ttttatcggt tgtagctgaa tttgtgccag acaagctcta tccttcggtt tcatctttta
     9061 tcacttctgt attaacaaag ccgtcgtcat cgtggttagg gatttcaatt ctgacaactc
     9121 tttggaccct gtcacgtagt atgactattt tgcagaaggc ctttaataag gcttatggca
     9181 tcaatgaaca ccgtgatttt attattgggc acttgattgg catattttta ggaattggtc
     9241 tgcaggtaat tatcctctta agtattacgc ttttgacttt cgggcaggca gttttttctt
     9301 atattaataa gctggttcct attgaagacg cctggctgaa gggacttctt agtcaaacac
     9361 agttagtagg tttactggct ctgtttgctg ccttggttat gctttatttc tttttgccaa
     9421 atgttcggat aaaaaaagtt cgatatgttt ttccaggaac gttgtttgtt ctgttgacga
     9481 tgacttctat tggaaagtta ttttcgattt atgttgataa ttatgctaat aagttgctgg
     9541 attttagaat agtaacagct gtcgtctttc ttgtttttat gctttggttc atttttatgg
     9601 ctcaggtact catcattggt gcaatgatta atgctacggt tcaaagtatg caggtagaag
     9661 agtttcatgc tagagatggg gatattgttt ctatcttgaa taggctaaag gcaagattta
     9721 cagcgataga taaagaatgg gagtgagaaa gaactctat
//
LOCUS       DASFRC010000081         9668 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.081, whole genome shotgun sequence.
ACCESSION   DASFRC010000081 DASFRC010000000
VERSION     DASFRC010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9668)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9668)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9668
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.081"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            125..427
                     /gene="gatC"
                     /locus_tag="U1087_001361"
     CDS             125..427
                     /gene="gatC"
                     /locus_tag="U1087_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017644687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HEM4755834.1"
                     /translation="MKISEAEVRHVAKLSKLEFSDQETAEFATSLSKIVDMVELLNEV
                     DTTGVAVTTTMADRKNVLRADIAQKGESREELFKNVPESQDNFIKVPAILDGGGDA"
     gene            427..1893
                     /gene="gatA"
                     /locus_tag="U1087_001362"
     CDS             427..1893
                     /gene="gatA"
                     /locus_tag="U1087_001362"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014295200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HEM4755835.1"
                     /translation="MTFNNKTIDELHDLLVKKEISATELTKATLEDIKSREGAVDAFL
                     TITEDAALAQAAALDEKGIDADNVMAGIPLAVKDNISTKGILTTAASKMLYNYEPIFD
                     ATSVSQAYAKDMIVVGKTNMDEFAMGGSNENSAFKPTKNAWDQTKVPGGSSGGSAVAV
                     AAGQVRLSLGSDTGGSIRQPAAFNGIVGMKPTYGRVSRFGLIAFGSSLDQIGPFSQTV
                     KENAQLLNVISGHDVKDATSTINEIADFTSKIGQDIKGMKIALPKEYMGEGIDPQVKE
                     TILKAAKHLESLGAIIEEVSLPHSKYGVAVYYIIASSEASSNLQRFDGIRYGFRAEDA
                     TNLDEIYVKTRSQGFGEEVKRRIMLGTFSLSSGYYDAYFKKAGQVRTLIIQDFEKVFA
                     DYDLILGPTAPTVAFGLDTLNHDPVAMYLADLLTIPVNLAGLPGLSIPAGFVEGLPVG
                     LQLIGPKYSEETIYQVAAAFEATTDYHKQQPVIFGGAN"
     gene            1893..3332
                     /gene="gatB"
                     /locus_tag="U1087_001363"
     CDS             1893..3332
                     /gene="gatB"
                     /locus_tag="U1087_001363"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017770317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HEM4755836.1"
                     /translation="MNFETIIGLEVHVELNTNSKIFSPSSAHFGEDPNANTNVIDWSF
                     PGVLPVLNKGVVDAGIKAALALNMDIHKEMHFDRKNYFYPDNPKAYQISQFDEPIGYN
                     GWIEIELEDGSTKKIRIERAHLEEDAGKNTHGTDGYSYVDLNRQGVPLIEIVSEADMR
                     SPEEAYAYLTALKEIIQYTGISDVKMEEGSMRVDANISLRPYGQEKFGTKTELKNLNS
                     FNYVRKGLQHEVERQAKILRSGGQIQQETRRYDESTGETILMRVKEGSADYRYFPEPD
                     LPLYEVDDSWIEEVRAELPVFPKARRAHYVENLGLTAYDAGQLTSTKALSDFFEAAVA
                     AGGDAKQVSNWLQGEVAQFLNAEGKTIEQIALTPENLVEMIALIADGTISSKIAKKVF
                     VHLAKEGGSAKAYVEKAGLVQISDPAVLIPIIHQVFADNEAAVADFKSGKRNADKAFT
                     GFLMKATKGQANPQVAQQLLAQELAKLLD"
     gene            3441..4788
                     /gene="dgt"
                     /locus_tag="U1087_001364"
                     /pseudo
     CDS             3441..4788
                     /gene="dgt"
                     /locus_tag="U1087_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646466.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dNTP triphosphohydrolase"
     gene            complement(4847..5845)
                     /locus_tag="U1087_001365"
     CDS             complement(4847..5845)
                     /locus_tag="U1087_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM4755837.1"
                     /translation="MVTIKDIAKQAHLSSATVSRVLKGDLTLSVSQETRDRIFNLAQD
                     LGYTKHLKKQAPQQKGTIGIVQWYTESEELADLYYYSIRASIEQTASLLGYQIVRSFN
                     DLTNPLLQGLDGIIAVGKFSSGQIAELTNLSSKLIFVDSDTLTEGFSCVTTDFEHSVQ
                     TVIDHFHSQGLTDIGLLVGQEETTDGHQLPTDPRLTAFRTYLGSLGILQEDYIYQGKF
                     STQSGYELMSQAIADLGDQLPTAFFMANDTLAVGALRALQERQIAVPERVQLITFNDT
                     AITRQVYPALSSISVFTEEMGQEAMQLLDRVIASPQPHHPRKIKLGTQLVIRESSY"
     gene            5978..7150
                     /locus_tag="U1087_001366"
     CDS             5978..7150
                     /locus_tag="U1087_001366"
                     /EC_number="2.7.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002275277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase"
                     /protein_id="HEM4755838.1"
                     /translation="MNTEQLKQAFLDVFGQEADATFFSPGRINLIGEHTDYNGGHVFP
                     AAITLGTYGAARKRDDQLLRFYSANFEELGIIEVDLNNLVFDKADNWTNYAKGVLKFL
                     QEAGHSIDTGMEVFVYGNIPNGSGLSSSASLELLIGIIAEELYGLELTRLDLVKIGKQ
                     TENHFIGVNSGIMDQFAIGMGADQRAIYLDTNSLEYELVPLDLGDHVIVIMNTNKRRE
                     LADSKYNERRAECEKAVEELNAVLTIQTLGELDEWTFDQYSYLIKDENRIKRARHAVL
                     ENQRTLQARKALEEGDLATFGRLVNASHVSLEHDYEVTGLELDTLAHTAWEQEGVLGA
                     RMTGAGFGGCGIAIVHKDKVEAFKENVGKTYTEVVGYAPSFYVAEIAGGSRVLSRK"
     gene            7160..8641
                     /gene="galT"
                     /locus_tag="U1087_001367"
     CDS             7160..8641
                     /gene="galT"
                     /locus_tag="U1087_001367"
                     /EC_number="2.7.7.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose--hexose-1-phosphate
                     uridylyltransferase"
                     /protein_id="HEM4755839.1"
                     /translation="MMAGLVDRFVEQVIANSDFEEMDALYLRNRVLALVGDQVLTVQT
                     DLEDLIELKDELLAHGVRTGFVGELLEEQDMVGSCLMDLMTPNPSQVNRDFWQTYQDS
                     PEQAIGDFYELSKRNDYIKMAAIAKNIYYQVSTEYGDLEITINLSKPEKDPKSIAAAT
                     KAEASNYPKCLLCMENEGYQGRINHPARANHRIIRLELGQEKWGFQYSPYAYYNEHAI
                     FLNQEHVPMVISPRTFEQLLDLLDLLPGYFVGSNSDLPISGGSILTHNHYQGGRHSFA
                     MEKAPIERQLVFDGFESVSAGIVKWPMSVIRLSSADKPSLLGLATKILEKWRSYSDDN
                     VQIKAETDGTPHHTITPIARKRGDLYELDLVLRDNQTSEEFPDGIYHPHPDVQHIKKE
                     NIGLIEVMGLAILPPRLKAELAEVEKFLLGQDSQVADYHQPWAESLKTAHPDVTEETV
                     EQVVRESVGQIFARVLEDAGVYKRTPEGQAAFLRFVEFVGLAT"
     gene            8716..9624
                     /locus_tag="U1087_001368"
     CDS             8716..9624
                     /locus_tag="U1087_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEM4755840.1"
                     /translation="MAEKRFGILITLIAGIAWGLSGVSGQYLMSRGVSVDMLTSLRLL
                     VSGFFLVGLAYATAKEQLLIVLKNRKALLGIFVFAMLGLVLNQMAYLQAIYHTNAGTA
                     TVLQYLCPILVLAYTCLKNREKPSGIELISIILAVAGTFLIATHGKLDELAVTPIGLF
                     WGIFSAFTYALYIILPGKLIRQYGSITVIGLGMLMGGFVVTLGLQTWQHRLPIDGGSF
                     LGLLGIVGVGTIFAYTAFLKGVSMVGPVNGSLLASIEPIASVFFAVWLVNEQFYAIDF
                     VGMLFILLAVLLISLKDILVAQKSIG"
BASE COUNT         2700 a         1748 c         2421 g         2799 t
ORIGIN      
        1 tttgcaattt aaagaacgga tttttaggag gaaattggta acatattagg tcatttctac
       61 ctttgtctgg ggctggaaat atggtataat gagaagatag atttccatta ggaggaaagt
      121 aagaatgaag atttctgaag ctgaagtccg tcacgttgcc aagctgtcta agctggaatt
      181 ttcggaccag gaaacagcgg aatttgcgac aagtttgagc aagattgtcg atatggttga
      241 attgctcaat gaagtagata cgacaggtgt tgcggtaacg accactatgg ctgaccgtaa
      301 gaatgtcttg cgggcggata ttgcccaaaa aggtgagagc cgtgaggagc tctttaaaaa
      361 tgtgcctgaa tcacaagata actttatcaa ggtaccagct attctagacg ggggaggaga
      421 tgcctaatga cttttaacaa taaaaccatt gatgaattgc atgacctcct tgtcaagaag
      481 gagatttcgg ctacggagtt aaccaaggca actttggaag acattaagag ccgtgaggga
      541 gcagtggatg ctttcttgac tatcacagaa gatgcggctt tggcgcaggc tgctgccctt
      601 gatgaaaagg gaattgatgc ggacaatgtt atggcgggga ttcctttggc agtcaaggac
      661 aatatctcta ctaaggggat tttgactacg gcagcttcaa aaatgctcta taactacgag
      721 ccgattttcg atgcgacatc agtttcccaa gcctatgcca aggatatgat tgttgttggt
      781 aagaccaaca tggatgagtt tgccatgggt ggttctaatg agaactctgc cttcaaaccg
      841 accaaaaatg cttgggacca gacaaaagtt cctggtggtt cttcaggtgg ttcggcagtt
      901 gcagttgctg ctggtcaggt tcgtttgtca ctggggtctg acacaggtgg ttctatccgc
      961 cagcctgcag cctttaatgg tatcgttggg atgaaaccga cttatggaag ggtgtcacgt
     1021 ttcggtttga ttgcctttgg ctcatctctt gaccagattg gtccattttc acagacggtt
     1081 aaggaaaatg cccagttgct caatgttatc tctggtcatg atgtcaagga tgcaacatca
     1141 actatcaatg aaattgcaga ctttactagc aagattggtc aagacattaa aggcatgaaa
     1201 attgctttgc cgaaagaata catgggcgaa gggattgatc cgcaggtcaa ggaaactatt
     1261 ctcaaggcgg ctaagcactt ggaaagcttg ggggcaatca ttgaagaagt tagtctgcca
     1321 cattctaagt atggggttgc tgtttactac atcatcgctt catcagaagc gtcttctaac
     1381 ttgcagcgtt ttgacggtat ccgctatggt ttccgtgcag aagatgcgac aaacttggat
     1441 gagatttacg tgaaaacccg tagccaaggt tttggtgagg aagtcaaacg tcgtattatg
     1501 ttagggacat ttagcttatc atcaggttac tacgatgcct acttcaagaa ggctggtcag
     1561 gtgcggacct tgattatcca agattttgaa aaagtctttg cggactatga tttgattttg
     1621 gggccaactg ctccgaccgt tgcctttggt ttggacacgc tcaaccatga ccctgtggct
     1681 atgtacttgg cggacttgtt aacaattcct gtaaacttgg caggtcttcc tggtctttct
     1741 attcctgctg gttttgtaga aggcttgcca gttggtttgc agttgattgg tccaaaatat
     1801 tcagaagaga ccatttacca agtggctgct gcctttgaag cgacaacaga ttaccacaag
     1861 caacaaccag tgatttttgg aggtgctaac taatgaactt tgaaacgatt attggtctag
     1921 aagtccatgt ggagttgaat accaactcga aaattttctc accttcatct gctcattttg
     1981 gtgaggatcc aaatgctaat accaacgtga ttgactggtc cttcccaggc gtccttccag
     2041 ttcttaacaa gggtgttgtg gatgctggta tcaaggctgc cttggccttg aacatggata
     2101 ttcacaagga aatgcacttt gaccgtaaga actatttcta tcctgataac cctaaagcct
     2161 atcagatttc ccagtttgac gagccgattg gctacaatgg ttggattgag attgagctag
     2221 aagatggttc aaccaagaaa atccgtatcg agcgtgccca cttggaagag gatgctggta
     2281 agaataccca cgggacagac ggctattctt atgtagacct caaccgtcaa ggagtgccac
     2341 tgattgagat tgtatcagaa gccgatatgc gttcgcctga agaggcctat gcctatttga
     2401 cagccctcaa ggaaattatc caatacactg gcatttcaga tgtcaagatg gaagaggggt
     2461 ctatgcgcgt ggatgccaac atctctcttc gtccctatgg tcaagaaaaa tttggtacca
     2521 agactgagtt gaaaaacctc aactccttca attatgtgcg caagggcttg cagcatgaag
     2581 tagaacgtca ggccaaaatc ttgcgttctg gtggtcaaat ccagcaggaa actcgtcgtt
     2641 acgatgaatc tactggtgaa accattctca tgcgtgtcaa ggagggttca gctgactacc
     2701 gttatttccc tgagccagac ctgccactct atgaggttga tgatagctgg attgaggaag
     2761 ttcgtgcaga attgccagtc tttccaaagg ctcgccgtgc tcactatgtg gagaacttgg
     2821 gcttgactgc ctatgatgct ggtcagttga cgtctaccaa ggccttgtct gacttctttg
     2881 aagcagcagt ggcagcaggt ggcgatgcca aacaagtttc taactggttg cagggtgagg
     2941 tggctcagtt cctcaatgct gaaggtaaga ctattgagca aatcgctttg acaccagaaa
     3001 acttggttga gatgattgcc ttgattgcgg atggaaccat ttcatctaaa attgctaaga
     3061 aagtctttgt tcacttggct aaggaaggtg gttctgctaa ggcttatgtt gagaaggctg
     3121 gtttggtaca gatttcagac ccagcagtcc tcattccgat tatccaccaa gtctttgcgg
     3181 ataatgaagc agccgtagct gacttcaagt ctggcaaacg caatgcagac aaggccttta
     3241 caggcttctt gatgaaagcg actaagggac aagccaatcc ccaagttgct caacaactct
     3301 tggctcagga attggctaag ttgttggatt agttttaaaa ctatagaata caaaaatcac
     3361 tcaaaaagag tggttttttg ttgactaaaa taataattat tatcatcatg atatagaggt
     3421 atgaggggga ataaaaagat atgtcaaaag acttcgatga ttttttacga gaacatgagg
     3481 agaatgtcaa taagttaaag aaacgtgata aagaaactga gtcggataag gaaagagcaa
     3541 gagatgaatt ttctagagat tattccaggg taatctattc taattccttt agacggcaac
     3601 aagggaaaat gcaactgttt gccgttaatg gtagagcttt tcacaggaac aggctgacac
     3661 atagttttga agtggcacag attgtaaggg ggattgttga ttatttgaaa aaaatacatc
     3721 taataatatt gatatagatt tcaattcgat gtctgtcgtt gttgaaactg gtgcacttgt
     3781 acacgacatt ggcaatcccc catttggtca tcatggagaa agaattttaa atgatttggc
     3841 aaaggatatt ggttttgaag gaaatgccca agggttacgg gtattaaaaa atattgaaaa
     3901 aaagtctcca aatcataaag gcttaaactt aacatataga accctagctt caattctaaa
     3961 atattatgtt ccatatagaa aatcacgaaa gactgagaag ttcatataca aagaagatta
     4021 tgaggaattt aaaaagagat ttaaagaaat ggatgtgttt gtgagaacaa ttgatgttca
     4081 aattgttgat ttggcagatg aaattgctta ttgtgcacat gacttggaag atgcattggc
     4141 gagtaactac ttcaccattg atcaatttgt atttttgttg gaacagaaat tgggagaaga
     4201 tcaaacatta gaggatttta aggaatggat tgaagaggca aaaaataagg caaaaagaag
     4261 taaatccaat gatgattatg atttttattt tagacgagaa ttgctttcta ttattgtgaa
     4321 caaattcatt gaggacatag aagttgtaaa acttaagaaa agtgataagg aaaaattagg
     4381 gaatgatcaa gacaaagaac tagggctcgg tcattataaa aacttgctgg tgcattgaag
     4441 aaaacgattt tcgaaggcgt aacaaattct gacgatatta ttttatatga aaatgttggg
     4501 acgaaagtgt tgactagttt atttgattta ttcatgaacg aagaatataa tcggaagagt
     4561 tttttgatgc cgatcgaata tcgatttgaa aaagacgata cccaaagtga taagaaaaga
     4621 aaagtactag attatatttc tgccatgatg gacacttacg caattgagat gtatataaaa
     4681 cattttggta cagatccgtt cttagagaaa tatgatgcag ctatattcaa gaaaggaact
     4741 ggtaaaaagc taatagagtg tttagcacaa aatttcttac ataaatagcc atatgtttaa
     4801 gaaaaccgag agttcgtgct gaattctcgg gttttcttat gcacttttag taagaactct
     4861 cccgtataac tagctgggta cctagtttaa tcttacgggg atggtggggc tgcggactag
     4921 caatcacacg gtctagcagc tgcatggctt cttgccccat ttcctcggtg aagacactta
     4981 tagaagacag ggctgggtag acctggcgcg tgatggctgt atcgttaaag gtgatgagtt
     5041 gaactctttc tggcactgcg atttgacgct cttgaagtgc tcgaagggcg ccgacagcca
     5101 gggtatcatt agccatgaaa aaggcagtgg gtagctggtc gcctaggtct gcaatagcct
     5161 gactcatcag ctcataaccc gactgggtgg agaattttcc ttggtatatg tagtcttctt
     5221 ggagaatacc caaggagcct agataggtcc gaaaggcagt caggcgggga tctgttggca
     5281 gttggtggcc gtctgtggtt tcttcctgtc caaccaatag gccaatgtct gtcaaacctt
     5341 gcgaatggaa gtggtcaata actgtctgaa cagagtgttc aaagtcagtc gtgacgcagg
     5401 agaatccctc ggtcagtgta tcagaatcca caaagattag cttggaagac aagttggtca
     5461 gctctgctat ttgcccagaa gaaaatttgc caactgcgat gatgccgtcc aatccttgga
     5521 ggaggggatt ggtcaagtcg ttgaaggagc ggacgatttg gtagcccaag aggctggcgg
     5581 tttgctcgat gctagctcgg atagagtagt agtagaggtc agccagctct tcactctccg
     5641 tataccattg gacaatgccg atggtgcctt tttgttgagg agcttgtttt ttgaggtgtt
     5701 tggtgtagcc caggtcctgt gccaagttga aaatgcggtc gcgggtttct tggctgacgg
     5761 atagggtcag gtctcccttg agaacgcggg aaacggtggc agaggaaagg tgggcttgtt
     5821 ttgctatgtc tttgattgta accatgttct tctcctgttt atttgtctct agtatagcat
     5881 aaaagataaa attagtaaaa atttagtaaa aatattgact tttaaattgt tgagttgtac
     5941 aataaaagaa aacgattaca aaatctagga ggttcttatg aacacagaac aactcaagca
     6001 ggcctttctc gatgtgtttg gtcaagaggc agatgcgact ttcttctcac caggtcggat
     6061 taatttgatt ggtgagcaca cggactacaa tggtggtcat gttttccctg cggctattac
     6121 cttggggacc tacggggctg ctcgcaaacg tgacgaccag cttttgcgtt tttattctgc
     6181 taactttgaa gaacttggaa ttatcgaagt ggatttgaac aatctggtct ttgataaggc
     6241 agataactgg accaactatg ccaagggtgt tctcaaattc ttgcaagaag cagggcacag
     6301 cattgataca ggtatggaag tctttgttta cggtaacatt ccaaatggtt caggtttgtc
     6361 atcatcagct tccttggaac tcttgattgg catcatcgca gaagagttgt atggacttga
     6421 attgacgcgt cttgatttgg tgaaaattgg gaaacaaacg gaaaatcact ttatcggtgt
     6481 caattctggc atcatggacc agtttgcgat cggtatggga gcggaccaac gtgccattta
     6541 tttggatacc aatagcttgg agtatgaatt ggtgccccta gatttgggtg accatgtgat
     6601 tgtcatcatg aacaccaaca aacgtcgtga attggcagac tctaagtata atgagcgtcg
     6661 tgcggaatgt gaaaaagctg tggaagaatt gaatgcagtc ttgactattc aaactctagg
     6721 agaattggat gagtggacct ttgatcaata tagttatttg attaaagatg agaaccgtat
     6781 caagcgtgct cgccatgctg tcttggaaaa ccaacggacc ttgcaagctc gtaaggcctt
     6841 ggaagaagga gatttggcta cctttggtcg tctggtcaat gcttcccatg tttctttgga
     6901 gcatgattat gaagtgacag gtctagaatt ggataccttg gctcacacag cttgggagca
     6961 agaaggagtt cttggtgctc ggatgacagg agctggcttc ggtggctgtg gtattgctat
     7021 tgtccacaag gataaggtgg aagcattcaa agaaaatgtc ggcaagacct atacagaggt
     7081 cgtgggctat gcaccaagct tctatgtagc ggagattgct ggaggctctc gcgttttatc
     7141 tcgaaaatag attggagaaa tgatggctgg attggtggat cgttttgttg agcaggtcat
     7201 tgccaacagt gattttgaag aaatggatgc tctttacctg cgcaatcggg tcttggcttt
     7261 ggtgggagac caggttctga ctgttcaaac agatttagag gacttgattg aattaaaaga
     7321 tgaattattg gctcatggag ttcgaactgg ttttgtgggt gaattgctgg aagagcagga
     7381 catggttggg tcttgtttga tggatttgat gacaccgaat ccgagtcagg tcaatcgtga
     7441 tttttggcag acctatcagg acagtccaga gcaagcgatt ggtgacttct atgaattgag
     7501 caagcgcaat gactatatca agatggctgc gattgcgaaa aatatctatt atcaagtttc
     7561 gacagagtat ggggatttgg aaatcacaat caatctgtct aaacctgaga aggatcccaa
     7621 gtctattgca gctgctacga aagctgaagc aagcaattat cccaaatgcc tactctgtat
     7681 ggaaaatgag ggctatcagg gtcggattaa ccatccagca cgcgccaacc accgcattat
     7741 tcgcttggag cttggacagg aaaagtgggg cttccagtat tcgccctatg cttactacaa
     7801 tgaacatgct attttcctaa atcaggaaca tgtgccgatg gtcattagtc cgcgaacatt
     7861 tgagcagctc ttggacttgt tggatttgtt gccaggctat tttgtcggtt ccaactctga
     7921 tttacctatc tcgggtggct ccatcttgac ccacaatcac tatcagggtg ggcggcacag
     7981 ttttgccatg gaaaaggcgc cgattgagcg ccagctggtc ttcgacggct ttgagtccgt
     8041 ttcggcagga attgtcaaat ggcctatgtc ggtgattcgc ttgagttcgg cagataagcc
     8101 atcgcttctt ggtttagcga ctaagatttt ggaaaaatgg cggagctact cagatgataa
     8161 cgttcagata aaggctgaga cggatggaac tcctcatcat accatcaccc cgattgctcg
     8221 gaaacgagga gatttgtacg agctggattt ggttctccgc gacaatcaga cctcagaaga
     8281 gtttccagat ggcatctacc atccacatcc agatgtgcaa catataaaga aagaaaacat
     8341 cggcttgatt gaggtaatgg gcttggcgat tttacctcca cgcttgaagg ccgaattggc
     8401 tgaagtagaa aaattcttac tgggtcaaga tagtcaggtg gctgactatc atcagccttg
     8461 ggcggaaagc ctgaaaacag ctcacccaga tgtgacagag gaaactgtcg aacaagttgt
     8521 tcgtgagtca gtgggacaaa tttttgcgcg tgtattggaa gatgcagggg tctacaaacg
     8581 aacaccagaa ggacaggcag cctttctacg attcgtagaa tttgtaggtt tagcaacata
     8641 attgcaagaa agagtgggac ggtgtcctgc tcttttggta taatgaaagt attcatagtg
     8701 tgagaaggag atataatggc ggaaaagaga tttgggatac tgattacatt aatagcaggt
     8761 atagcctggg gcttgtctgg agtgagtgga cagtacttga tgtcacgtgg tgtttcagtg
     8821 gatatgctta cctccctgcg tttgttggta tcgggattct ttctcgttgg cctggcttat
     8881 gctacagcga aagaacagct gttgatagtg ttgaaaaata gaaaagcctt gttgggaatt
     8941 tttgtttttg cgatgttggg tctggttctt aaccagatgg cttatttaca agccatctat
     9001 cataccaatg ctggaacggc tacggtttta caataccttt gccctatctt agtcttggct
     9061 tatacctgtt tgaaaaatag ggaaaaacca tcagggattg agttgatttc aattatctta
     9121 gccgtagcag gaactttttt gattgcgact catggaaaat tagatgaatt ggcagtgact
     9181 ccaatcggtt tgttctgggg aatcttttca gcctttactt atgcgctata tattattttg
     9241 ccaggtaaat tgatccgtca atacggcagt ataacagtga ttggtttagg gatgttaatg
     9301 ggtggttttg tagtcacgct tggtttgcaa acttggcagc atcgtcttcc tattgatggt
     9361 ggaagtttcc tgggcctgtt aggtattgtc ggagtcggga cgatttttgc ctatactgcc
     9421 tttcttaaag gcgtcagtat ggttggtcct gtcaatggca gtcttttggc ctcgattgag
     9481 ccgattgcat ctgtcttttt tgcagtatgg ttggtcaatg aacaatttta tgcaattgat
     9541 tttgttggaa tgttgtttat tttacttgct gttttgctta tttctttaaa agatatattg
     9601 gttgcccaaa agagtattgg ttaatatact ctttttctac catttgtcaa gtccatcaag
     9661 gtatttga
//
LOCUS       DASFRC010000082         9653 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.082, whole genome shotgun sequence.
ACCESSION   DASFRC010000082 DASFRC010000000
VERSION     DASFRC010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9653)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9653)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9653
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.082"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            92..2044
                     /gene="thrS"
                     /locus_tag="U1087_001369"
     CDS             92..2044
                     /gene="thrS"
                     /locus_tag="U1087_001369"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEM4755841.1"
                     /translation="MLKITFPDGAVREYQAGVTTFEIAESISKFLAKKALAGKFNGKL
                     IDTTRAIEEDGTLEIVTPDHEDALDILRHSAAHLFAQAARRLFPDIKLGVGPAIQDGF
                     YYDTDNTAGQISNEDLPRIQEEMMKIVKENFPSERREVTKEEALEIFKNDPYKLELIH
                     EHSDDEGGLTIYTQGEYVDLCRGPHVPSTGRIQIFELLNVAGAYWRGKSENPMMQRVY
                     GTAWFDKKDLKAYLQMREEAKERDHRKLGKELDLFMISQEVGQGLPFWLPNGATIRRT
                     LERYITDKELASGYQHVYTPPLASVELYKTSGHWEHYSEDMFPTMDMGDGEEFVLRPM
                     NCPHHIQVYKNHVRSYRELPVRIAELGMMHRYEKSGALTGLQRVREMTLNDGHIFVTP
                     EQIQEEFKKALQLIIDVYADFNLNDYRFRLSYRDPEDKEKYYDNDEMWENAQRMLKGA
                     MDEMGVDYFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLDFLLPERFGLTYIGADG
                     EEHRPVMIHRGVISTMERFTAILIETYKGAFPTWLAPTQVTMIPISVEAHLDYAWKVA
                     KELQDRGVRVHVDERNEKMQYKIRQSQTSKIPYQLIVGDKEMEDNAVNVRRYGSKATQ
                     TQSVTEFVDQILADIDRKSRPAETAE"
     gene            complement(2128..2922)
                     /locus_tag="U1087_001370"
     CDS             complement(2128..2922)
                     /locus_tag="U1087_001370"
                     /inference="COORDINATES: protein motif:HMM:NF013884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HEM4755842.1"
                     /translation="MQIYAVFGSSIVISKILFSSYTVDKIQPSHLVSNFLLPDTSMWY
                     IWFLILMATATLILHRLQLTKPVSLICIGLFTLFATLFGGPLNISNLPIGLQHLTSLP
                     LFYFLGIYFAKKEIHKKMVRQTVFHSLAGLVTVFYLIYLQSYQTYPSQHLPFHTFLRY
                     ANGLAMTYLIVSIIITLERRLPSIIAWFGQYSLYFYLVHTYILTIITLFIKKYFIDFS
                     TPLLLLISFGLLLIINTLALFIVKRIPILDKVFQGKVISYPQKKHE"
     gene            complement(2886..3161)
                     /locus_tag="U1087_001371"
     CDS             complement(2886..3161)
                     /locus_tag="U1087_001371"
                     /inference="COORDINATES: protein motif:HMM:NF013884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HEM4755843.1"
                     /translation="MKRLIYIDQLKGFGILAVLFLHTVGYIRNALPYTDIPLWRLEAW
                     LHSFLMPFFVFVSGFSFYHFYLKPKPRNNTYIYIDCCKYTQSLAVVL"
     gene            complement(3284..3943)
                     /locus_tag="U1087_001372"
     CDS             complement(3284..3943)
                     /locus_tag="U1087_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009659320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM4755844.1"
                     /translation="MNYVLELLKPSTFQLLWSGLKLTLYISSISVVLSVLFGMILAIM
                     RNGKNPIFKWIATIYIEFVRNVPNLLWIFTVFLVFQMKSTPAGITAFTIFTTAAMAEI
                     IRGGLNAIGPGQTEAGLSQGFTPVQIMVYIIMPQAIRKMLPAIISQIVTVIKDTSFLY
                     SVIALQELFGSSQILMGRYFEAEQVFALYLMVALIYFSINFAISSLSRYVAKSWASSI
                     E"
     gene            complement(3958..4656)
                     /locus_tag="U1087_001373"
     CDS             complement(3958..4656)
                     /locus_tag="U1087_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM4755845.1"
                     /translation="MTVLTTSPYAWENWVSYFKDFPTFFQGFLFTLAISVGAFIMAMF
                     LGIVFGSLSSSKNKVLKIIARVYVEYYQNTPLLVQFMIVYYGLPLISNYVLMPSIYWT
                     AVICVGLYHGAYIAEVIRTGIEAVPTGQTEAALSQGFTQAETMRIIILPQAIPTILPP
                     LTNQVVNLIKNTATVAIISGADIMFMTKSWSAMNANYIPAFAGAAFLYFIMCFPVASW
                     GRRIEEKNKSAFSH"
     gene            complement(4671..5510)
                     /locus_tag="U1087_001374"
     CDS             complement(4671..5510)
                     /locus_tag="U1087_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEM4755846.1"
                     /translation="MDKKKINIFFAIRLLVFGLILLVFAKQPVAQTETPASITNSDQV
                     QAIIDRGVLRVGVKQDVPNFGYKNPDTGEFEGMEIDIARKIADELGVDIEFTPVTAQT
                     RGPLLDNGQVDMVIATFTITEERKLLYNFTTPYYTDAVGFLVNKDSGIKTFTDLDGKT
                     IGVAQGSITRTLISELADKYGISVNFAELGSYPELSVSLRAHRTDAFSVDRSILSGYI
                     SSKSELMDFSFSASDYGIVTKLSNKDLNDYLNSLVEKWTADGSLQSIYDANGLKPVTE
                     TDE"
     gene            complement(5521..6282)
                     /locus_tag="U1087_001375"
     CDS             complement(5521..6282)
                     /locus_tag="U1087_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM4755847.1"
                     /translation="MALVEFKDVNKYYGDYHALRNINLEFEPGQVVVLLGPSGSGKST
                     LIRTINGLEAIDEGTLIVNGHDISSTSIKELVSLRKEVGMVFQHFNLYPHKTVLENVT
                     LAPIKVLGIDKATAEKTAQKYLEFVNLWDRKDSYPAMLSGGQKQRVAIARGLAMRPEL
                     LLFDEPTSALDPETIGDVLAVMQKLARDGMNMIVVTHEMGFAREVADRIIFMAEGEVL
                     VDTTDVNGFFDNPTEPRAQQFLSKIINHESDKVKL"
     gene            6476..7180
                     /locus_tag="U1087_001376"
     CDS             6476..7180
                     /locus_tag="U1087_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005589489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM4755848.1"
                     /translation="MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAE
                     FPDIVILDLMLPELDGLEVARTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKP
                     FSNRELQARVKALLRRSELAETQTNIESTGTPELVIGDLLILPDAFVAKKHGKELELT
                     HREFELLHHLAKHLGQVMTREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPE
                     YILTRRGVGYFIKGND"
     gene            7173..8522
                     /gene="vicK"
                     /locus_tag="U1087_001377"
     CDS             7173..8522
                     /gene="vicK"
                     /locus_tag="U1087_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall metabolism sensor histidine kinase
                     VicK"
                     /protein_id="HEM4755849.1"
                     /translation="MINQLRYLMTTAEFWFVVILIGFLIALTVLLIENYRDNKQIKQL
                     NQKVNALIEGNYADVLDMRGSPEITDMANSLNDLSEVIRLTHDNLEQEKTRLTSILSY
                     MSDGVIATDRIGRIIMINDMAQKQLGLSNPKQEQYHLLEVLDLSDRYTLRDLLAQTPE
                     IVIEHTNENEEFLTLRANFATIRSESGLISGLVVVLHDMTEQAKEERERRLFVSNVSH
                     ELRTPLTSVKSYLEALDEGALTESVAPSFVKVSLDETNRMMRMITDLLSLSRIDNQVG
                     QIDVELINFTAFMTFILNRFDQMKNADSDKVYTIVRDYQISPIWVEIDTDKMTQVLDN
                     ILNNAIKYSPDGGTITFSMKTTDSQLIVSVSDEGLGIPKADLPRIFDRFYRVDKARSR
                     AQGGTGLGLAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLPYSKDIALDEWDDSDEEE"
     gene            8529..9332
                     /locus_tag="U1087_001378"
     CDS             8529..9332
                     /locus_tag="U1087_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016465920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM4755850.1"
                     /translation="MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLL
                     AEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMDIYANELTWQAMESKLGKIDVAQ
                     KHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
                     ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIY
                     LGHLSKENNIKELAHMTMVNQLAQADLGVGVDFQVYDTSPDTATPLTKI"
BASE COUNT         2865 a         1800 c         2278 g         2710 t
ORIGIN      
        1 gccaaaaaga taaacgagaa ctagacgctt gcgtcgtcgt tctgtttcct attttggctg
       61 tgtccgctta acgcccttta tatcttatat tatgcttaaa attactttcc cagatggtgc
      121 tgttcgtgag taccaggctg gtgtgacaac ttttgaaatt gcggagagca tcagcaagtt
      181 tttggcgaaa aaggctcttg caggtaagtt caatggtaaa ttgattgaca ccactcgtgc
      241 tattgaagag gacggtacgc ttgaaatcgt aacgcctgac cacgaggatg ccttggacat
      301 cttgcgtcac tcagcggcgc acttgtttgc ccaagcggct cgtcgtctct tcccagacat
      361 caagttgggg gttggtccag ctattcagga cggtttttat tacgatacgg acaatacggc
      421 tggtcagatt tcaaatgaag atttgccacg cattcaggaa gaaatgatga agattgtcaa
      481 ggaaaacttc ccttctgaac gtcgtgaggt gactaaggaa gaggctcttg aaattttcaa
      541 aaacgatcca tacaagttgg aattgattca cgagcactct gatgacgagg gcggtttgac
      601 catctatacc cagggtgaat acgttgacct ctgtcgtggt ccacacgttc cgtcaacagg
      661 ccgtatccag atttttgaat tgctcaacgt ggcaggtgct tactggcgtg gtaagagcga
      721 aaatcccatg atgcaacggg tctatggtac agcttggttt gacaagaaag acctcaaggc
      781 ttaccttcaa atgcgtgagg aagccaaaga gcgtgaccac cgtaaacttg gtaaggaatt
      841 ggatctcttc atgatcagcc aagaagttgg tcaaggcttg ccattctggt tgccaaatgg
      901 agcgaccatc cgtcgtacct tggagcgtta catcacagat aaagagttgg cttcaggtta
      961 ccagcacgtt tatacgccac cgttggcttc tgtcgagctc tacaagactt caggtcactg
     1021 ggagcattat tcagaagata tgttcccaac tatggacatg ggtgacggtg aggagtttgt
     1081 gcttcgtccg atgaactgtc cgcaccacat tcaagtttac aaaaaccatg tgcgttctta
     1141 ccgtgaattg ccagtgcgta tcgccgagct tggtatgatg caccgctatg aaaaatctgg
     1201 cgcattgact ggtttgcaac gggtgcgtga gatgaccctc aacgacggtc atatctttgt
     1261 cacacctgag caaatccaag aagagttcaa aaaagctctc cagttgatca tcgatgtgta
     1321 cgcagatttc aacctaaacg actatcgttt ccgcctgtct tatcgtgatc cagaggacaa
     1381 agagaagtac tacgacaacg atgagatgtg ggaaaatgcc cagcgtatgc tgaagggggc
     1441 tatggatgaa atgggcgtag actacttcga ggctgagggt gaagctgcct tctacggtcc
     1501 gaaattggat atccaggtga aaacggccct tggtaacgag gaaaccctgt caaccattca
     1561 gttggacttc ctcttgccag aacgctttgg tctgacctac attggtgctg acggtgagga
     1621 gcaccgccca gtcatgattc accgtggtgt tatttcgaca atggaacgct tcactgccat
     1681 cttgattgaa acctacaagg gtgctttccc aacttggttg gctccaaccc aagtgactat
     1741 gattccaatc tctgtggaag ctcacttgga ttacgcttgg aaggttgcca aggaattgca
     1801 agaccgtggc gttcgcgtac acgtggatga acggaacgag aagatgcaat acaagatccg
     1861 tcagagccag accagcaaga ttccatatca gctcatcgtc ggtgacaagg aaatggagga
     1921 caatgcagtc aacgttcgtc gctacggaag caaggcaaca caaactcaat ctgtcacaga
     1981 atttgtggac cagatcctag cagatattga ccgcaagtca cgtccagctg aaacagctga
     2041 ataataatta taaggagaag tccgaaaggg cttctttttt gacagtaaaa actcccaagc
     2101 gattggctgg gagtgcagta ccacatgcta ttcgtgcttc ttttgagggt aggaaatcac
     2161 cttcccttga aatactttat ccagtatagg aatcctttta acgataaaca aggctagggt
     2221 gttgatgata agaagtaatc caaaacttat gagcagcagc agaggtgtag aaaaatctat
     2281 aaaatatttc tttatgaaaa gagtaataat tgtcaggatg taggtatgta ccagatagaa
     2341 gtaaagtgaa tactggccaa accaagctat aatagagggt aatcttcttt ccagagtgat
     2401 tatgatagaa acgatcaggt aggtcatagc tagtccgttt gcatatcgta ggaaggtatg
     2461 aaatggcagg tgctgacttg ggtaggtttg gtaggactgt aaatagatga gatagaagac
     2521 ggtgaccaga ccggctaaac tgtgaaaaac ggtctgtcta accattttct tgtgaatttc
     2581 tttcttggca aaataaatac ctaaaaaata aaatagtggt aaagaagtca ggtgttgtaa
     2641 cccgattggt aagttgctaa tatttaaggg accaccaaat agtgtagcga atagtgtaaa
     2701 aagaccaatg caaatcagtg aaactggttt tgttagttgc aatcgatgga ggataagagt
     2761 tgcggtagcc ataaggatta aaaaccaaat ataccacata gatgtatctg gcaggagaaa
     2821 attagaaaca aggtgactag gttgtatttt atcaacagtg taacttgaaa agaggatttt
     2881 gctaattaca atactactgc caaagactgc gtatatttgc aacagtcgat atatatataa
     2941 gtattatttc taggttttgg ttttaggtaa aaatgataga aactaaagcc actgacaaat
     3001 acaaaaaatg gcataaggaa agagtgtagc caagcttcca gtcgccaaag agggatatcg
     3061 gtatatggaa gagcgtttcg gatgtaaccg actgtatgca gaaataagac agctaaaatt
     3121 ccaaaacctt tcagctggtc aatatagatg agtcgtttca taagtttctc ctttatttaa
     3181 ctctaaacta tttgggaaca gaggcatttc caaaatggtt tgagtacatt ttctttgatt
     3241 atatcataaa accagctttc tcgagaaaac tggttcagat tgtttattca atactgctcg
     3301 cccaagactt agccacataa cgtgacaggc ttgaaatagc aaagttgata ctgaagtaaa
     3361 tcaaggctac catgagatag agtgcaaaaa cttgttctgc ctcaaagtag cgtcccatga
     3421 ggatttgact agagccgaag agttcttgca gggcgataac ggagtatagg aaactagtgt
     3481 ccttgataac cgtcacaatc tgcgagatga tggctggcag catcttgcga atggcctgcg
     3541 gcatgatgat atagaccatg atttgcactg gggtaaaacc ctgtgataag ccagcttcgg
     3601 tctggcccgg tccgatggcg tttagaccgc cacggataat ctcggccatg gctgccgtgg
     3661 taaaaatagt aaaagcagta ataccagcgg gcgttgactt catttggaag actaagaaaa
     3721 cggtgaaaat ccagagcaag tttggcacgt tacgcacaaa ttcgatatag atggttgcaa
     3781 tccacttgaa aattggattt tttccatttc gcatgatggc taaaatcatg ccaaagagaa
     3841 ctgatagaac caccgaaatg ctagagatat aaagggttaa cttcaaacca ctccacaaga
     3901 gttggaaggt tgaaggtttg agtaattcta aaacataatt catcgttcaa cctcctttta
     3961 gtgtgaaaag gctgacttat tcttttcttc aatgcgacgt ccccagcttg caacagggaa
     4021 gcacatgatg aagtaaagga aagcagcgcc agcaaaggct gggatgtagt tggcattcat
     4081 ggcagaccaa gattttgtca taaacataat atcagctcca gaaataatgg caacagtagc
     4141 cgtattctta attaagttta ctacttggtt ggtcaaaggt ggaagaatgg tcggaatggc
     4201 ctgtggtaaa atgatgattc gcatggtttc agcctgggta aatccttgtg agagtgcggc
     4261 ttcagtttgc ccagtaggca cagcctcaat ccctgtacga atgacctctg cgatataggc
     4321 accgtgatag agtccgacgc agataacagc tgtccagtag atggacggca tgagaacata
     4381 atttgaaatc agtggaagtc cataataaac aatcatgaac tgaactaaaa gcggcgtgtt
     4441 ctgatagtat tcaacataga cacgtgcgat gatttttaaa actttatttt tacttgaaga
     4501 gagactacca aagacaattc ctaaaaacat ggccatgata aaggcaccga cagaaatggc
     4561 taaggtaaag agaaaacctt ggaaaaaggt tggaaaatcc ttgaaataac tgacccaatt
     4621 ctcccaagcg taaggactag ttgttaaaac tgtcatattg tttcaccttt ctattcgtca
     4681 gtttctgtga ctggtttgag accattggca tcatagatgc tttgtaggct accatcggca
     4741 gtccattttt ctacgagact atttaagtag tcgttaaggt ctttgttaga taatttagta
     4801 acaattccat agtcagaagc tgagaagcta aagtccatga gttcagattt cgaactgata
     4861 tacccagaaa ggatagatcg gtctactgaa aatgcgtctg tacggtgagc acgtagcgag
     4921 acagagagtt ctggataaga accaagctct gcaaaattga cagagatacc atatttgtct
     4981 gctagttcag agatgagggt acgtgtaatg gaaccctgag ctacaccgat tgtctttcca
     5041 tccaggtcgg taaatgtctt aattccacta tccttattga ccaagaagcc aacggcatct
     5101 gtgtagtaag gagttgtgaa attgtagagg agtttacgtt cctcagtgat ggtgaaggtt
     5161 gcgatgacca tatccacttg accgttatct aagagtggtc ctcgggtttg tgccgtaacg
     5221 ggagtaaatt cgatatctac acctaattca tctgcaattt ttcgagcaat gtcaatctcc
     5281 attccctcga attcaccagt atcagggttc ttgtagccaa agtttgggac gtcctgtttc
     5341 actccgacgc ggagaacgcc tctatcgata atagcttgaa cttgatcact attggtaatg
     5401 gatgcgggtg tttctgtttg agctactggt tgttttgcga aaacgagaag aataagtcca
     5461 aagaccaata atctaattgc aaagaaaatg ttgatttttt tcttatccat agacttcctc
     5521 ctagagtttt actttgtcag attcgtggtt gataatcttg ctgaggaatt gttgggcacg
     5581 aggctctgtc ggattgtcaa agaagccatt tacatctgtt gtatcaacta aaacttctcc
     5641 ctcagccatg aagatgatgc gatcagctac ttcacgggca aagcccattt cgtgtgttac
     5701 gacaatcatg ttcatcccgt cacgtgccaa tttttgcata actgcaagta catctccgat
     5761 cgtttcaggg tccaaggcag atgttggttc atcgaagagt agaagctcag gtctcatagc
     5821 taagccgcga gcgatggcga cacgttgttt ttggcctccg gatagcatag cagggtagga
     5881 atctttccga tcccagaggt taacaaactc aagatatttt tgagcggttt tttcagctgt
     5941 agccttatcg attcccaaaa ccttaatcgg tgccaaggta acattttcta acacagtttt
     6001 gtgtgggtaa aggttgaaat gctggaaaac catgccaact tctttgcgaa gtgatacgag
     6061 ctctttgata gaagtagagg aaatatcatg tccattgacg atgagcgttc cttcatcaat
     6121 tgcctctaaa ccgttaatcg tgcgaatgag agtagatttt ccggatccgg aaggtccaag
     6181 gagaacaaca acctgtccag gttcgaattc caagttgata ttgcgtaggg cgtggtagtc
     6241 gccatagtat ttgttgacat ctttaaattc tactaaagcc ataaaattct ccttgcatag
     6301 tgtttttaag gtattcccat cttagcattg cctatataca atgtcaagta aattctgaca
     6361 atttaatgta tagtatgtta taaaacgtga catagctgtg tcaggtggtt ttgaaatatg
     6421 aattttttag gtaagtctga tataatagaa gaaataaagc aaaggtaaga tactaatgaa
     6481 aaaaatatta attgtagatg atgaaaaacc aatctcagat attattaagt ttaatatgac
     6541 gcgtgaggga tatgaagttg tgacagcttt cgatggacgt gaagccttgg aagtatttga
     6601 ggctgagttt cctgacattg tcattttgga cttgatgttg ccagaattgg acggactaga
     6661 ggttgctcga acgattcgta agaccagcaa tgttccaatc ttgatgttat ctgctaaaga
     6721 tagcgaattt gataaggtta tcgggcttga aatcggggcg gatgattatg tgaccaaacc
     6781 cttctctaat cgcgaattgc aggcgcgtgt taaggctctt cttcgtcgta gtgaattggc
     6841 agagacgcag acaaatattg agtcaacagg aactccagag ttggtgattg gcgatttgct
     6901 cattctgcct gatgcgtttg ttgctaagaa gcatggtaaa gagctggagc tgacccatcg
     6961 tgagtttgaa ttgctccacc atctggccaa acacttaggt caggttatga ctcgagaaca
     7021 tctattggaa acagtttggg gttatgatta ctttggtgat gtccgcacgg tggatgtaac
     7081 gattcgtcgt ctgcgtgaga agattgaaga tacaccaagc cgaccagaat acattcttac
     7141 tcgtcgcgga gtgggatatt ttataaaagg aaatgattaa tcaattacgt tatttaatga
     7201 ccacggcaga attttggttt gttgtcattt tgattggctt tctaattgct ctgacggtcc
     7261 ttttgattga aaactatcgg gataataagc aaattaaaca actcaatcaa aaagtcaatg
     7321 ccttaattga ggggaattat gcagatgtgt tagacatgag gggaagtcct gaaatcacag
     7381 atatggctaa ttccctcaat gatttgtccg aggtcatccg cttaactcat gataatttag
     7441 aacaagaaaa gacgcgtctg acgtccatcc tgtcctatat gagtgacggt gttattgcta
     7501 cagaccgtat cggacggatt atcatgatta acgatatggc ccagaaacag ttggggttat
     7561 ctaacccaaa gcaggagcag tatcacctgc tagaggtttt agatttatca gaccgttata
     7621 cattgagaga tttgttggct cagacacctg agattgtgat tgaacacacc aatgaaaacg
     7681 aagaattttt gactttacgc gctaattttg ccacgattcg tagtgagagt ggtctgattt
     7741 ctggcctggt tgtcgtcttg catgatatga ccgagcaagc caaggaagaa cgggaacgta
     7801 ggctgtttgt atcaaatgtg agtcatgaat tgcgtacgcc attgacttcc gtcaaatcct
     7861 atctagaggc tctggatgag ggagcgctga cggagtctgt tgcaccgagt tttgttaagg
     7921 tatccttaga tgagaccaac cgcatgatgc ggatgattac agacctccta agtttatcgc
     7981 gtattgataa tcaagttggt cagatagatg tcgaactgat aaactttact gcttttatga
     8041 cctttattct taaccgtttt gaccaaatga aaaatgctga ttcagataag gtctatacga
     8101 ttgttcgtga ctatcaaatc agtcctattt gggttgagat tgatacagat aagatgactc
     8161 aggttttgga taatatctta aataatgcca ttaaatattc gccagatggc gggacaatta
     8221 ccttcagcat gaagaccaca gatagccagt tgattgtatc cgtatcagac gaaggtctgg
     8281 ggattccgaa agcagattta cctagaattt ttgaccgatt ttatcgcgta gacaaggcac
     8341 gatcacgtgc ccaaggtggt acaggtcttg gtttagctat tgcaaaagaa atcgtgaaac
     8401 aacataaggg ctttatctgg gctaaaagcg aatatggtca tggctcaacg tttacaattg
     8461 tcttgccgta cagcaaggac atcgcactag atgagtggga tgattcagat gaggaagaat
     8521 aggagaatat gatcggaaaa ggttttaatt atagtatttt agcttcgggg tccagcggga
     8581 attgttttta cctagaaaca gataaaaaga aaatcttagt ggatgctggc ttatcaggga
     8641 aaaagattac cagtcttttg gcggaaattg atcgaaagcc tgaggatatt gatgctatcc
     8701 tggtaacgca tgaacatagc gatcacatcc atggtatcgg tgttttagca cgtaagtatg
     8761 ggatggacat ttatgccaat gaattgacct ggcaggctat ggagagcaaa ttgggcaaga
     8821 ttgatgtggc tcaaaaacat atctttgaat tgggtgctat gaagactttt ggcgacctag
     8881 atattgagtc ctttggagtt agccatgatg ctgcatgtcc gcaattttac cgttttatga
     8941 aggatgacaa atcctttgtt atgttgacgg atacaggcta tgtcagtgac cgcatggttg
     9001 gaattgtaga aaatgccgat gcttatttga ttgaatccaa ccatgatatt gaaattttgc
     9061 gctcgggttc ttactcttgg aacctcaaac aacggatttt gtcagataag ggtcatcttt
     9121 gtaatgaaga tggagctgat gccatgattc gctcgttggg aaatcggacc aaaaagattt
     9181 acctagggca tttgtcaaag gaaaacaata tcaaggaatt ggctcacatg accatggtta
     9241 atcagttggc gcaggctgat ttaggagttg gagtggattt ccaagtctat gacacatcgc
     9301 cagatacagc gactcccttg accaagattt gacaattgat acaaactaag ttatactgaa
     9361 attactaatt atacgaggtg aagttacatg aataattaag ctacttatta gtcgttctta
     9421 aaacttgtag tgaggttata tgaaccgatt atacaaggga taagactgct cataagggct
     9481 tagtattcat gtgacttttt ccatagggaa aggtcatgtt ttgcatggct tttttcttgt
     9541 tcattgagca gaataggggc cctttttgtg aagaaaagag gtctatatgg aagtaataaa
     9601 atgtattcga ttagagaagg aatttgcggg atgtagaggc tgggcaaaaa gct
//
LOCUS       DASFRC010000083         9556 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.083, whole genome shotgun sequence.
ACCESSION   DASFRC010000083 DASFRC010000000
VERSION     DASFRC010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9556)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9556)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9556
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.083"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            274..1098
                     /locus_tag="U1087_001379"
     CDS             274..1098
                     /locus_tag="U1087_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000621675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4755851.1"
                     /translation="MITVQHIHKQFGDKVALDNISFDIQEGQIFGFLGPSGSGKTTMI
                     KIITGQLPADSGKSYLLGKESTLLSPEDFEAMGLVSDSSGFFEKMTLENNLLFYAKFF
                     DVSPKEVEVILQKVGLLDSKKTIAEKLSTGMKQRMLLARALINSPKVLFLDEPTSGLD
                     PTTSKRIHELLLELKGKGTTIFLTTHDMAEATFLCDQLVLLNQGNLVEKGSPQDLIHK
                     YNVTKKVRVTFEDGSDTELLFSELTPEKLAQATTIHSCEPTLEDIFIQQTGATLNV"
     gene            1091..1825
                     /locus_tag="U1087_001380"
     CDS             1091..1825
                     /locus_tag="U1087_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM4755852.1"
                     /translation="MYKRFLALLWLRTQVLVTNKNILLPVLMPYFMLLLFKFVMKTDD
                     TKAMDLMGICFSMAIGMSVGSPISAMISEEKEKNNLSTLLLTGVRPSEYVLSILCYPV
                     VISFVNLILFPAITQADVSGYMLSYSVIMLLTSLASILINLLIGATSQSQSKSQVTSM
                     MITMAVSMGPSLSLMNETVGQILKYSFLGAYIEFFKNPHFELLNQEFYYLLGWIVLIS
                     LALILYLGNWMKYFKNSLSGIKEKIQ"
     gene            2160..2888
                     /locus_tag="U1087_001381"
     CDS             2160..2888
                     /locus_tag="U1087_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HEM4755853.1"
                     /translation="MNMFWSIFKSVIHRRDVALFYAFAGLPILVPILSKFLVGVKAEY
                     TDNFLDFLGAALATQDGIVLPILLLSLIISAVFRDEIDSGILFLYKDLNRTRLFNAKI
                     ISLVTMYASYVLLTMLTSAIAYFGFLNASGKVVSDDWNNVQSTFLSIFATISINVIGI
                     LLVAMVSIKAKSLQAVLAGVFWSLFTTTAPFLIGVRYVVPNGYAQMSFNQPLLAWSLV
                     AAITTLYIVATYLKGRSNFEKLEF"
     gene            2898..3476
                     /locus_tag="U1087_001382"
     CDS             2898..3476
                     /locus_tag="U1087_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM4755854.1"
                     /translation="MVIRYIRPVALSIALIILASISYLLATSLVLFSPSQFLQVAYLF
                     SIMVGMPVGFILFPSMLTKRYQLCQELSEVKFSWKSFVLLAIAIFLINFWCIQSDEYV
                     NQFIIATCEEFLFRYLIYRILKSEYPTWLAMLVTSLLFGVLLHMNYPLLDNLIIRTPL
                     GLLFSVLATRFGLQYAIGGHWIYNLLVSRFPF"
     gene            3491..3919
                     /locus_tag="U1087_001383"
     CDS             3491..3919
                     /locus_tag="U1087_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755855.1"
                     /translation="MIFILLLSLLYTCLTVVSSQLLLSLSVPILLLLTYLLPPIVNSI
                     CLGLLKDNSWKAWSAGIFPTMSMIFYAAFAYITSSNGQWAQFSQLNTVSDDVMSVEVA
                     SNLLAPSQILFVAVVYYGVAIATYFIQQTSRQKEKGVTYA"
     gene            3912..4784
                     /locus_tag="U1087_001384"
     CDS             3912..4784
                     /locus_tag="U1087_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4755856.1"
                     /translation="MLKINHLSKQFAGNEFYSLKDVSLEINKGEIVGLIGKNGAGKST
                     LMKLIAKSLKPSSGTITYKGTDIFSQDNLLADFGIMIDPVFYPEMTVMDNLKFYLDLH
                     GKKDLYPNIEKTLKLVELWEARNRKPKGFSFGMKQRTALAIALVAEPDFLILDEPFVG
                     LDPIGVQKLIDILKQWSSERQISMLISSHQLGELEALCSRYVYIESGELAEAFEGKSH
                     PSVLVQLNTTKNLDSVEALLNDHVVLEGEVLEISTATPTSELNQIFGVLARQELIVKL
                     EVKENHLKEIFTKG"
     gene            4790..5560
                     /locus_tag="U1087_001385"
     CDS             4790..5560
                     /locus_tag="U1087_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755857.1"
                     /translation="MKQIFPAIFKTIWKRKETQIYLLFTLFPFIYLVTSFIEGSNFMQ
                     IHASEGSVSLVAFTNMMMSSVDSFILPSLTLYFLAISVFRKEVDEHTMFLYRDLGRKQ
                     IFWSKYLGLLATIVIFYGLFFATSAFVHYVRVIHLPFGSPSVFDTSLAESLSNVFCIV
                     AYLLKDILSVSLATALCLYLKNITTMIIGFLVTITMMILAVVGGPVAMIFPTSYMPLA
                     SEGLTGVGLAYLGAIGVTLVYALVFTKIAAKKFKNLEF"
     gene            5563..7275
                     /locus_tag="U1087_001386"
     CDS             5563..7275
                     /locus_tag="U1087_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4755858.1"
                     /translation="MNRRLVGVLLKSLNKTMFLFGIALSALGVGMGLFLPQFIGQLLD
                     QTYLSNLLTRPELLAGFILFFVSVYTVQALSNYFIGRSGGNALKQLQQYIYESLLTTY
                     VKDLDQYQSGDLASRLTNDMSVVLNFITVILPNFLMNGLMVIGSIYFLWTISPWLTGL
                     SLLLLPMLSMVMIPMNQRLEGYYSAYQEGLGQVSSRISHKFTTIRLMKAFQGEKHEQR
                     EMGKSFQKLSQTFERMIRLSAVQHTLVSSLMTGFIILMLLVAGIEVTKGVMTMATLTT
                     FVLYMMQLIDPVTDIASSLNELTEFQAVSKRLVELLELTKEEQADTELVDEASIQLEN
                     VRFSYHTDPVLNGVSVRIPEGAHVAIVGPSGAGKSTIFALLMKYYQDYQGEIRIGQQC
                     LSDISTKEMRRLISFIPQDNTLFHGTIRENLLYGKNESVSEERIAHILKELGLSHLVA
                     ELEDGLDTRISENGTGLSEGQKQRFSIARALLLEHPIYLLDEATASLDTVTERVISKA
                     IDRLTAGKTRLTIAHRLHTVREADAILVLDKNGQVADYGPHQQLVERNHLYQDFLRGL
                     PQAS"
     gene            7377..7589
                     /locus_tag="U1087_001387"
     CDS             7377..7589
                     /locus_tag="U1087_001387"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755859.1"
                     /translation="MKQTTYTLSLGGNDSGDSKVSKMEKSLKNIWRGSQSGYGVLGRG
                     VLINGLSVCGLRSKVAMTKIHRRFYK"
     gene            7844..8845
                     /gene="ruvB"
                     /locus_tag="U1087_001388"
     CDS             7844..8845
                     /gene="ruvB"
                     /locus_tag="U1087_001388"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HEM4755860.1"
                     /translation="MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIE
                     AAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVNIKQTSGPVIEKAGDLVALLNDL
                     EPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
                     RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTP
                     RIANRLLKRVRDFAQIMGDGLIDDNITDKALTMLDVDREGLDYVDQKILRTMIEMYGG
                     GPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATAKAYEHLGYPYTEK"
     gene            8913..9536
                     /locus_tag="U1087_001389"
     CDS             8913..9536
                     /locus_tag="U1087_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HEM4755861.1"
                     /translation="MTPTFIWDLDGTLLDSYEAILAGIQETYEQFGLPFDREEVRNFI
                     LRYSVKDLLVRDADKYGLDSHELNRVRATSLKEKNTQIPLMSGAREILDWTAEKGIQN
                     FVYTHKSDNAFQVLEDLGVRQHFTEILTSDSGFARKPSPEALLFLIEKYGLNKENTYY
                     IGDRLLDVETAINAGIQSINLQIDGVEQNWKIVSLLDIKQMLTDEYK"
BASE COUNT         2715 a         1644 c         2179 g         3018 t
ORIGIN      
        1 tagttatgcc tgcggctcgt tgtctagtac taaaagtaaa ctaaaagact ataaaaattt
       61 tttcaaaaaa aacaacgatt tgcgaataag taagtgagag ggaaaattcc cctcaaggag
      121 atacacactt gaaaaaataa atcattttcc aaatgattta cgaataaaca agtgtaggaa
      181 aaatgaaagg agaagaagga tgattatagc accagcttta tggattttat catggtggaa
      241 aaaataagtt tgttttaatt taggggagta gagatgataa cagttcaaca tatccataaa
      301 cagtttggag acaaggttgc tttagacaac attagctttg atattcaaga aggacaaatc
      361 tttggcttct tgggtccctc tggatcggga aagacaacca tgattaagat tattaccggc
      421 cagctaccag cagatagcgg aaaatcctat ctactaggta aagaatcgac cctattgtca
      481 ccagaggact ttgaagcaat gggcttggtc agtgattcga gtggtttctt cgagaagatg
      541 accttggaaa ataatttgtt gttctatgca aaattctttg atgtcagtcc gaaagaagta
      601 gaggttattc tgcaaaaagt agggttactg gatagtaaaa agacaattgc agaaaaacta
      661 tctacaggta tgaaacagcg aatgttgctt gccagagccc tgatcaattc accaaaagta
      721 ttgtttcttg atgagccgac aagtggtcta gatccaacaa cttcaaaacg gattcatgaa
      781 ctattattgg agctaaaagg taaggggacg acgatcttct tgaccacgca tgatatggca
      841 gaagcgacat tcttatgtga tcaattggtt ctattgaatc aaggaaattt ggttgaaaag
      901 ggaagtccgc aggatttaat tcataagtac aatgtcacta aaaaagtgag ggttactttt
      961 gaggatggta gtgatactga gctgttgttt agtgagttga cacctgagaa gttagctcag
     1021 gcaaccacta ttcactcttg tgagccgact ttggaagaca tttttattca acagacagga
     1081 gcaaccttaa atgtataaac gatttttagc cttgctttgg cttcgcacac aagtcttggt
     1141 gaccaataaa aacatcctat tgccagtatt gatgccttac ttcatgttat tgctgtttaa
     1201 gtttgtcatg aaaacagatg ataccaaggc aatggatttg atgggaattt gtttttcaat
     1261 ggctattggt atgtcagtag gaagtcctat atctgcaatg atttctgaag aaaaggaaaa
     1321 gaataatctg tctaccttgt tactgacagg tgttcgccca agtgaatatg tgctgtctat
     1381 tttgtgttat cctgttgtca ttagctttgt caacctcatt ctatttccag ctatcacaca
     1441 ggccgatgta tcaggataca tgcttagcta ctcagtcatc atgctcttga catcattggc
     1501 ttctattcta atcaaccttt taatcggggc aacttcccaa tctcaatcca agtcacaggt
     1561 gacctcgatg atgatcacaa tggcagtatc tatgggacct agcctgtctt tgatgaatga
     1621 gacagtgggg cagattttga aatatagttt tctaggagct tatattgaat ttttcaaaaa
     1681 tccccatttt gaacttttga atcaagaatt ctattaccta ttggggtgga ttgtcctgat
     1741 tagtttggcc ttgattctct acttgggaaa ttggatgaaa tattttaaga actccctatc
     1801 aggaataaaa gaaaaaatcc aatagtcttt ataatatgag taaattagaa aggagaaatt
     1861 tatggtatca gcattcatta tcggtgtcgg tgtaggaatt attgtttatt gtattcaaaa
     1921 ctaataggaa attgaagaaa gagtattata ttatgaagga ggagaaacac atgctagtag
     1981 ctgcagttac aggtttcgtt gttggttatg tggcggcaca ttatttgaga ccataattga
     2041 tggtgaaata tgagtattaa aattctttgg tttttccaga gaatttttct ttttgtttac
     2101 gaataaataa gtgagggagt tattgctcat ctatcttatt gataaaaagg ggaaacaata
     2161 tgaatatgtt ttggtcaatt tttaaatcgg taatacatcg aagggatgtt gctttgttct
     2221 atgcttttgc tggtttacca atcttagttc ctatactgtc caaatttttg gtaggcgtaa
     2281 aggctgaata tacggataat tttttagatt ttctaggagc agcattggca acacaggatg
     2341 ggattgtgtt accaatattg ttgttatcct tgataatttc cgcagttttt agggatgaga
     2401 ttgatagcgg tattctattt ttatataaag atctgaatag aactcgactt tttaatgcaa
     2461 aaatcattag tttagtgacg atgtatgcct cttatgtcct tctaacaatg ctgacaagtg
     2521 cgattgctta ttttggcttc ttgaatgctt ctggaaaagt agtatcggat gattggaata
     2581 atgtacagtc caccttccta tctatttttg caacaatttc aatcaatgtt atcggtattc
     2641 tattggttgc catggtttct atcaaagcta aatccttaca ggcagtttta gcaggagttt
     2701 tttggtcgct gtttacaaca actgcaccat ttctcattgg agttcgttat gtcgtaccga
     2761 atggctatgc tcagatgagc tttaatcagc cactgcttgc atggtccttg gtagcagcta
     2821 taacaacatt atatattgtt gctacctatc tcaaaggccg ttcgaacttt gaaaagctag
     2881 aattttagag gtgttttatg gtaatacgct atattagacc agttgcctta tcaattgctt
     2941 tgattatttt agcgtcaatt tcatatcttc tggcaacatc tttggttttg tttagtccca
     3001 gtcaattttt acaggtggct tacctatttt ccattatggt cggaatgcca gtaggtttta
     3061 ttctatttcc atctatgtta accaagcgtt atcaactttg ccaggagcta tcggaagtaa
     3121 agttcagttg gaaaagtttt gttttgctgg ctattgcaat tttcctgatc aatttctggt
     3181 gtattcaaag tgatgagtat gtcaatcaat ttattattgc gacttgtgaa gaattcttgt
     3241 tccgttatct tatctaccgt attctgaaaa gtgaataccc tacttggcta gctatgttgg
     3301 tcacttctct cttgtttgga gttttgctac atatgaatta tccattgttg gataatctaa
     3361 tcattcgaac tccactaggt ttattgttct ctgtgttagc tacacgtttt ggattgcagt
     3421 atgctatcgg aggacattgg atctacaatc tgttggtttc gagatttcca ttttaattgt
     3481 gagggttatg atgatattta ttctactatt gagtttattg tatacttgtt tgacagttgt
     3541 aagttcgcaa ctgctgttaa gcctttcggt tcctattttg ttattgttga cctatttgct
     3601 accacccatt gtcaattcaa tctgtttagg attgctaaag gataattctt ggaaagcatg
     3661 gtcagcaggc atttttccaa caatgtcaat gatattttat gctgcttttg cctacattac
     3721 gagtagtaat ggtcagtggg ctcagttttc tcaactgaat acagtttcag acgatgtcat
     3781 gagtgtcgag gtagctagta atctgttagc tccatcacaa atactatttg ttgctgtagt
     3841 gtattatggt gtagctattg ctacatactt tattcaacaa acaagtcgtc agaaagaaaa
     3901 aggagttact tatgcttaaa atcaatcatt tatcaaaaca gtttgcagga aacgaatttt
     3961 actcactaaa agatgtgagt ttagagatca ataagggcga gattgttggg ctgattggga
     4021 aaaacggagc tggaaaatcc acgctcatga aattaatagc caagtcccta aaaccaagtt
     4081 caggaaccat tacttataag gggacggata tttttagtca ggataatttg ttggcagatt
     4141 ttgggattat gattgatccc gtcttctatc cagaaatgac agttatggac aatcttaagt
     4201 tttatttgga tctgcatggg aaaaaagacc tctatccaaa tattgagaag actttgaaat
     4261 tagtagaatt gtgggaagct cgcaatcgga aacccaaggg attctcgttt ggtatgaaac
     4321 aacggactgc tttggcaatt gccttggttg cggagccaga tttccttatc ttagatgagc
     4381 cgtttgtggg cttggacccg attggtgttc agaaattgat tgatattttg aagcagtggt
     4441 cgagtgagcg acaaatttcc atgctgattt cgagtcacca actgggggag ctggaggcct
     4501 tgtgcagccg ctatgtctat atcgaatcgg gagaattggc agaggctttt gaaggcaaat
     4561 ctcatccaag tgtgctcgtg cagttgaata cgactaaaaa cctagactct gtagaggctt
     4621 tgctcaatga ccatgtggtg ctagaggggg aagtgttaga aatttccact gctacaccta
     4681 ccagtgagct aaatcagatt tttggtgtgc tggctcgtca agaattgatt gtgaaactag
     4741 aagtgaaaga gaatcacttg aaagaaatct ttacgaaagg gtagtgagta tgaaacaaat
     4801 ttttccagct atctttaaaa cgatttggaa gcgaaaggag acgcagattt atctcctgtt
     4861 cactttgttt ccttttattt atctggtcac ttcatttatt gaagggtcga attttatgca
     4921 aattcatgct agtgaggggt cggttagcct tgtagccttt acgaatatga tgatgagctc
     4981 tgtggatagt tttattcttc ctagtttgac cctgtatttc ttggctatct ctgtctttag
     5041 gaaggaagta gatgaacata ccatgttttt atacagagat cttgggcgga aacagatttt
     5101 ctggtctaaa tatttgggtc tcttagcaac aattgttatt ttctatggtc tcttctttgc
     5161 gacatctgca tttgtacatt atgttcgagt aattcacctg ccttttggca gtccgtccgt
     5221 ttttgatact agtttggcag agagtttgag taatgtgttt tgtattgtcg cttatttact
     5281 aaaagatatt ttatcggtta gtttggcaac tgctctttgt ttgtatctga aaaatattac
     5341 cacaatgatc ataggattct tggtgacgat tacgatgatg attttagcag ttgttggcgg
     5401 tccagttgcg atgatttttc caactagtta tatgccttta gcgagcgaag gtctaacagg
     5461 agtgggactt gcttacttag gagctattgg tgtgacgctt gtttacgcac tcgtatttac
     5521 taaaattgct gcgaaaaaat tcaagaattt ggagttctag gtatgaatag aagactcgta
     5581 ggagtattgt tgaaatcgct caataaaacg atgttcttgt ttggaatagc gctgagtgct
     5641 cttggggttg gaatgggctt attccttccc cagtttattg gtcagttgct agatcaaacc
     5701 tatttaagca atctattaac acgaccagaa ttgctggctg gcttcatcct tttctttgta
     5761 tcggtttata cggtacaagc cctatccaat tatttcatcg ggcgtagtgg tggtaacgca
     5821 ctcaaacagt tgcaacaata tatttatgaa tccttgttga ccacatatgt aaaggacttg
     5881 gatcagtacc aatccggtga tcttgccagt cgtttgacca atgatatgtc ggttgttctg
     5941 aacttcatca ccgttattct tccaaatttc ttgatgaatg gtttgatggt tatcgggtca
     6001 atttattttc tgtggaccat cagtccgtgg ctcacaggtc ttagtctctt gttgcttcct
     6061 atgttgtcaa tggttatgat tccaatgaat cagcggttgg aaggttacta ctctgcttat
     6121 caagagggat tagggcaggt ttctagtaga attagtcata aatttacaac gattcgtttg
     6181 atgaaggcct ttcagggaga aaagcatgaa caacgagaga tgggcaagtc ttttcagaaa
     6241 ctgtcgcaaa cctttgagag aatgattaga ctgtcagcgg tgcaacatac tttggttagt
     6301 agcttgatga cgggttttat cattctgatg ttgctggtag caggtataga agtgaccaag
     6361 ggagtgatga ccatggctac attgacaacc tttgtattgt acatgatgca actgattgat
     6421 ccagtaacag atattgcctc ttccttaaat gaactaacgg agtttcaggc ggtgtctaaa
     6481 cgtttggtag agttgctgga gctgactaag gaagaacagg cagatacaga gttggttgat
     6541 gaagctagta tccagttgga aaatgttcgg ttttcctatc atacagatcc ggttttgaat
     6601 ggagtatcgg ttagaattcc tgaaggagct catgtggcga ttgttggtcc aagtggagca
     6661 ggaaaatcaa ctatttttgc cttgctgatg aaatactatc aagactacca aggagagatt
     6721 cggattggtc aacaatgctt aagtgatatt tcaaccaagg agatgagaag attgatttcc
     6781 tttatacctc aagataatac cctcttccat gggacgatta gagaaaatct attgtatgga
     6841 aagaacgagt cagtgtctga agagcgtatt gctcatattc tcaaggagtt gggattgtct
     6901 catttagtag ctgagttgga agatggttta gatactcgga tttcagaaaa tgggacaggt
     6961 ttgtcggaag gccaaaaaca acgatttagc attgcgagag ccttgttgtt agagcatcct
     7021 atctatttgt tggatgaggc gacagcaagt ttagatactg tcacagaacg tgtcattagc
     7081 aaagcgattg accgtttaac agctgggaaa acaaggctaa ccattgctca ccgtttgcac
     7141 acagtgcgtg aggcggatgc gattctggtc ttagataaaa atgggcaagt agccgattat
     7201 ggtcctcacc agcagttagt ggagagaaat catctctatc aagatttctt aagaggctta
     7261 ccgcaagcca gttagtgaat gggagtcgat ggaccgacta gtctaagtct agggttacct
     7321 aataataaaa tggaatactg atgattactt gcacaataaa tagataggag aagagaatga
     7381 aacaaacaac ttacacatta tctttgggag gaaatgatag cggggattcg aaagtttcaa
     7441 agatggaaaa aagtttgaaa aatatatgga ggggatcgca gagcggttac ggcgttctgg
     7501 gaagaggagt attgataaat ggtttatccg tgtgcggatt gaggagtaaa gtagctatga
     7561 ccaaaattca cagacgtttt tataaatagt gaaaaataga atgaattctc ttttagtttc
     7621 ccttaagttt ggcgagttat actttattca agctagaaat agcgagactt ttactgaaat
     7681 agtttcaata tcgtcatccg taagagctaa agctcaaacg gctggcatat cttttcaatc
     7741 cgtatctcta agtcgcaagc gacaaggact agggattata taatctcctg agaatactgg
     7801 actcactgag tctggtattt tcattttatg ctataatggt ttcatgacaa atcgaatttt
     7861 agatatggaa caaatgcagg acgaggagta tgttgagcgt accctgcgtc cgcagaaatt
     7921 aaatgaatac atcggtcagg ataaggtcaa ggaccagctc aaaatcttta tcgaggcggc
     7981 caagctccgt gatgaagcct tggaccatac ccttcttttt ggcccaccgg gtctggggaa
     8041 gaccaccatg gcctttgtca ttgccaacga attgggcgtc aatatcaagc agaccagtgg
     8101 tcctgttatt gaaaaagcgg gtgacttggt ggcccttctc aacgacttgg agcctggcga
     8161 cgtcctcttt atcgatgaaa tccaccgtat gcccatggcg gtcgaggaaa ttctctactc
     8221 tgctatggag gatttctaca tcgacattat gattggagca ggggaggcca gtcgctccgt
     8281 gcatttggag ttgccaccgt ttaccctgat tggagcaacc actcgtgcgg gtatgctatc
     8341 caatcctctg cgggcccgtt ttggtattac cggtcatatg gagtattatg aactggctga
     8401 tttgacggag attgtcgagc gaacagcgga catctttgac atggagatta ctcatgaagc
     8461 tgctattgag ctggctcgtc ggtctcgtgg aactccccgt atcgccaacc gcttgctcaa
     8521 gcgggtgcgg gatttcgcac agattatggg agacggcctg attgatgata acattacgga
     8581 caaggccctg accatgctgg atgtggaccg cgaggggctg gactacgtgg accagaagat
     8641 tctccgcacc atgattgaga tgtacggcgg cggtcccgtc ggcctcaaca ctctgtcggt
     8701 caatattgcc gaggagcgtg agacggtgga ggacatgtac gaaccttacc tgattcagca
     8761 gggcttcctc atgcggacac ggacggggcg ggttgcgaca gccaaggctt acgagcactt
     8821 gggttatccc tatacggaaa aataatggca gagcagatga gacgagtaac gaccttgttt
     8881 cgagttcggt ctaaactagg aatggagata agatgacacc gacatttatt tgggatttgg
     8941 atggaacgct cttggattcc tatgaagcga ttttggctgg tatacaggaa acctatgagc
     9001 agtttggcct tccttttgac cgtgaagaag taaggaattt cattcttcgc tattctgtca
     9061 aggatttact ggtgcgtgat gcggacaagt acggtctaga tagccatgaa cttaatcgtg
     9121 tgcgtgcgac ttccttgaag gagaaaaata cgcagattcc tttgatgtct ggtgcgcgtg
     9181 aaattctgga ctggacagca gagaaaggaa ttcaaaattt cgtttataca cacaagagtg
     9241 acaatgcttt tcaggttttg gaggatttgg gtgtccgtca acatttcaca gaaatcttga
     9301 caagcgattc tggttttgcc cgcaaaccaa gtccagaagc tctgctattt ctcatcgaaa
     9361 aatacggact gaacaaagaa aatacctact atatcggtga ccgtttgctc gatgtagaaa
     9421 cagctatcaa cgcagggatt caaagcatca acctgcaaat tgatggtgtg gagcagaatt
     9481 ggaagattgt ttctttattg gacataaaac aaatgttaac tgatgaatac aaataaaaac
     9541 aaacgtaaaa ccgttt
//
LOCUS       DASFRC010000084         9520 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.084, whole genome shotgun sequence.
ACCESSION   DASFRC010000084 DASFRC010000000
VERSION     DASFRC010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9520)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9520)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9520
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.084"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..946)
                     /locus_tag="U1087_001390"
     CDS             complement(<1..946)
                     /locus_tag="U1087_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat protein"
                     /protein_id="HEM4755862.1"
                     /translation="MKKKLTIAIIIGFVSLIAGLILAGIGFFTGGITRLEEVAAPTEV
                     HKTFTDLNTINIDFIPHSVYIKESSDNNYHVTYANSDNNIQTPLKLSEKDGVLTLSAQ
                     ELKFAIEGIMQYLGERLAQRRINVFSVTIEVPKGKTLKKLTGYSSYLYNYGGFSIENA
                     HIQEVDLSAGIFLDNAQIDSGKITAGYFEAVNSALRNTSISANESSVNLIETSLENVT
                     IKNYQELNANQLTLLGKNVLTPSEYSLSVTNINLTDKSLQDINLNISTQLDIKTLAEH
                     LGYHYETLEELKQAVGDMSYFNEQAENVGIFTKDKYQTL"
     gene            complement(943..1698)
                     /locus_tag="U1087_001391"
     CDS             complement(943..1698)
                     /locus_tag="U1087_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1700 domain-containing protein"
                     /protein_id="HEM4755863.1"
                     /translation="MTRTEYMEQLEKYLKKLPHKEYFEAISFFNEYFDEAGPERETEI
                     IEELGSPKEAASELINNMLNKQIQEEKDQQEPIQLNWKLWVGLGALSMTGLFSFFLLF
                     IMGEFIGVIPLFATLILGAFFLGRYFRNFSQTKRTLWLAILAVISLPIAIPLLLILLA
                     SLLGLVALILALIVGAFVLGVGLLTSGGYLIWEAFSLMSEGFNIFLMGFGSGLSLIGG
                     AILIYILTGFFAYWSWRLVKACFKWILKRGKRA"
     gene            complement(1685..2011)
                     /locus_tag="U1087_001392"
     CDS             complement(1685..2011)
                     /locus_tag="U1087_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000273865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEM4755864.1"
                     /translation="MHFPVPAVLTEFLIMAILESDDSYGYEICQTIKLIANIKESALY
                     PILKRLEQNDFLTTYSQEYQGRMRKYYSLTQLGHEELVRLKDDWDTYTNTINGIIEGS
                     VRHDKN"
     gene            2320..2700
                     /locus_tag="U1087_001393"
     CDS             2320..2700
                     /locus_tag="U1087_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HEM4755865.1"
                     /translation="MKLYVQFMIILVFSFLGEAISTIFHLPIPGSIIGLILLFLALEF
                     KLIRLRHIHTVGNFLLANMTILFLPAAVGIMERFDAIKDYLLPIIIVILGAIFLNILV
                     IGFVVQFVKQKFEGDYIDAEGNHD"
     gene            2693..3388
                     /locus_tag="U1087_001394"
     CDS             2693..3388
                     /locus_tag="U1087_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002919316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LrgB family protein"
                     /protein_id="HEM4755866.1"
                     /translation="MTELFSNPIFGIMLSIAAYLIGMLIYRRFPHPITTPLLVATGLI
                     IVFLKMTGISYKEYYAGGSYLNMLIVPSTVALGIPLYRSFHLMKHHIRSILLGIFVAC
                     IVNTVFTALIAKWFGMDFFLAISLFPKSVTTAMAVGITDKMQGIATVTLVVVVATGIL
                     TSVLGPVFLKLLKIEDPVAVGLALGGTGHAIGTGTAIKYGHTQGAMAGLAIGITGIMY
                     VVISPIVAQIILQ"
     gene            complement(3422..4222)
                     /locus_tag="U1087_001395"
     CDS             complement(3422..4222)
                     /locus_tag="U1087_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HEM4755867.1"
                     /translation="MGANQETLMYTLEKSIKKKADLFEHSFSAYAVRSILASLYLGLG
                     IVISLYTADKLNHVAEGLGKFSYGLMFGWGLLMILYMNAELGTSNMMYMTVASHRKTI
                     PTKTALRMLATCILFNFVGAVLVCYLVSLTLPYQHVDAHSYLFEATVAKLSKTPLTQF
                     IEGIFANIVVNIGVFTFLRIKDDAGRLISVIFIIFIFAFLGYEHVIANFSLFSLAFFA
                     NGGPVEGMTLLSVLSNFLFSGLGNYVGGGLFIGLLYSWLNNQSKLYVD"
     gene            4363..5208
                     /locus_tag="U1087_001396"
     CDS             4363..5208
                     /locus_tag="U1087_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin family protein"
                     /protein_id="HEM4755868.1"
                     /translation="MDVTWTVKYITEFLATALLIIIGNGTVANVDLKGTKGNNSGWIL
                     IAIGYGLAVMMPALMFGNVSGNHINPAFTLGLAVSGLFPWAHVAQYIVAQLLGAMFGQ
                     LVVVAVYKPYFLKTENSNHILGSFSTISALDNGTKESRKAATTNGFLNEFVGSFVLFF
                     GALALTKHFFGSELVGKLIEQGYDKTVAETMTAPYTSGSIAVAHLGIGFLVMALVAAL
                     GGPTGPGLNPARDLGPRIVHALLPKSVLGENKADSKWWYAWVGVCAPIIASIAAVALF
                     KFLYL"
     gene            5337..6869
                     /locus_tag="U1087_001397"
     CDS             5337..6869
                     /locus_tag="U1087_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF853 family protein"
                     /protein_id="HEM4755869.1"
                     /translation="MSDVIAFGYGSSRAEMQLKRLNRHGIIAGATGTGKTVTLKVLAE
                     QLSDAGIPVFLSDIKGDLNSLVAANTKEIDPSRLEKTHYLDYSPVGYPVELWDVLGEN
                     GTPIRMTISELGPVLLTRLLGLNDTQESILNIVFSVADERGLLLIDLMDLRAMLNFVA
                     ENAAELSQYYGNIPARSVGAILRSLVVLEQQGGKIFFGEPSLDIADLMRTAEDGRGVI
                     NVLQATQLFNQPTLYSTVLLSLLSELYEVLPEVGDLDKPKMVFFFDEAHVLFKDAPKV
                     LLEKIELIVRLIRSKGVGVFFVTQNPTDIPDSVAAQLGNRIQHGLRAFTPKELKTVAT
                     VAETFRQEGDEDLAKVIQELQVGEAVVSTLQADGTPSFADRVLIYPPKSMLGTVEPSA
                     LLSVINNSPLMEKYADAVNRESAHEQILAMTEAKEAELIKKAEQAEAEKQAEKEAKAA
                     AKMEEKAQKEAAKAAQKTSQPASRKTDSMMDRFTKNLMSQVGREVGRVVTRGIMGMLK
                     GK"
     gene            6981..7589
                     /locus_tag="U1087_001398"
     CDS             6981..7589
                     /locus_tag="U1087_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HEM4755870.1"
                     /translation="MTDQLQALLKDYQPQPLGEKRSYAVFLPLVWSDDQWQVLYEIRS
                     ESISQPGEVSFPGGGIDEGETAEEAAIREVIEELDIQQKQIELLGEIDYLVFGRSTIR
                     CFVGRLHLDWQTLQPNDEVARFFTVPLETLLKTAPVYYQLDSQIVPDCDFPFERLRGG
                     VDYPFSHHKRSVPFYENLPENIWGMTAQFTHCFVEIVKSNLS"
     gene            7881..>9520
                     /locus_tag="U1087_001399"
     CDS             7881..>9520
                     /locus_tag="U1087_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein"
                     /protein_id="HEM4755871.1"
                     /translation="MSKQKVVSSLLLSTVVLGGLAFYSTTTVKAESLEPDVTSVSSSD
                     ATNKLVVSNEEESDFLAEEELEESDAPVETLNEEIKDVTEPSSPEALLQPRAMMSDSM
                     SSGMEEIQVKDEPSDNTAEKVVKQQSDLIQSSSADSFKNGKDKEKLESSVSIDLLSSE
                     NNEIKWKVSFDTSAWSFNYHHGGLYFILPEGLNLKSVKANTNDELFNRFPNKVDSTNN
                     GDGAPFRFFNKEENSDSFNNQWGWSAGQAPNEMINNWKTGNRFSKIYFIDKITDTRQV
                     TYTLTASVTDSNQKSFPLVAVMKSFWYTNSQGTQITSLAGREITLEKEKPLPPKETPA
                     PEAPSTPEKQPESPKEDPKKEDTPEVSPKPEAPTPDAPKQDVPETPDKQPEEMPKVPE
                     APKEDAPAPAPSTPSVPEEKPKEDSKPEVPSAPEAPKDAPSIPEKQPDAPQVPLTPEE
                     KPQVPEAPKQDDVQPDAPQVPEAPQQDDVQPDAPQVPEAPKEEVPTPPAPSVPEEQPK
                     ETPTPEVPKQDDVQPEAPKSDKVETDKQMPETKQPDMK"
BASE COUNT         2852 a         1842 c         2081 g         2745 t
ORIGIN      
        1 ataatgtttg atacttatct ttagtgaaaa taccgacgtt ttcagcctgt tcgttgaagt
       61 aactcatatc accaacagct tgctttagtt cttcaagggt ttcatagtgg tagcctaagt
      121 gttccgcaag tgttttgatg tctagctgtg tactgatatt cagattgatg tcttgtaagc
      181 tcttatctgt taggtttata tttgtaacag ataagctgta ttcggaagga gtgaggacgt
      241 tttttcctag gagagtcaat tgatttgcat tcaattcttg gtagttttta attgtaacat
      301 tttccaaact ggtttcgatt aaattgactg aagattcatt tgcagatata gaggtatttc
      361 tgagtgcaga attcacagct tcaaagtaac cagctgtgat tttaccgctg tcaatttgtg
      421 cattatcaag gaagatacca gcggataggt caacctcttg tatatgggca ttctcaatgg
      481 aaaagcctcc ataattatat aaataggaac tatatcctgt aagctttttc agagtcttcc
      541 ctttaggcac ttcaatggtg acggagaaga cattgatgcg acgttgggcc aacctttctc
      601 ccagatactg catgattccc tcaatggcaa attttagttc ctgtgcagag agggttaaga
      661 cgccgtcttt ctcactgagt tttagagggg tttggatatt gttgtcggag ttggcatagg
      721 tcacatgata gttgttatca ctagactctt tgatgtagac gctatggggg ataaagtcaa
      781 tgttaatggt attcaaatct gtgaaggtct tatggacttc cgttggagca gcaacctctt
      841 ccaaacgggt tatgccccca gtgaaaaatc caatgccagc tagaattaag cctgcaatca
      901 ggctgacaaa gccgataata atggcgatgg taagtttctt tttcatgctc gtttacctcg
      961 tttcaagatc catttgaagc aagccttgac cagtcgccaa gaccagtagg caaaaaatcc
     1021 agtcaagatg tagatgagaa tagctccgcc aatcaaagat aaacctgagc caaaccccat
     1081 gaggaagata ttgaatcctt ctgacataag gctaaaggct tcccaaatca gatagccacc
     1141 gctggtgaga agtccgacac ccaaaacaaa ggcaccgaca atgagggcca agatgagcgc
     1201 caccaatccc aatagactag ctaggagaat gagcaaaagt ggaatggcta taggcaggga
     1261 aatgacagct aggatagcca accagagcgt tcgttttgtt tggctaaaat tacggaagta
     1321 gcgaccgagg aaaaaggcgc cgaggataag agtcgcaaac agaggaatga ctccgataaa
     1381 ctctcccatg ataaagagta ggaagaaaga gaagagacct gtcatactta aggctcccag
     1441 accaacccag agtttccagt tgagttgaat aggttcttgt tgatccttct cctcctggat
     1501 ttgcttgttg agcatgttgt taatgagttc gctggcagct tcttttggtg aaccaagttc
     1561 ttctataatt tctgtttcac gctctggtcc agcctcgtca aaatactcat taaagaagct
     1621 gatggcttca aagtattctt tgtggggcag ttttttgaga tatttttcta actgctccat
     1681 gtattcagtt cttgtcatga cggacgctcc cttctatgat gccgtttatc gtgtttgtat
     1741 aggtatccca gtcatctttg agtcggacca attcttcatg acctaactga gttaggctat
     1801 aatacttgcg catacgaccc tgatattctt gggaataagt agtcaaaaag tcattttgct
     1861 ccaatcgttt taggattgga tagagggcgg actccttgat gttggcaatt aatttaatgg
     1921 tctgacagat ttcatagcca taagaatcat cggattccaa aatagccatg atgagaaatt
     1981 ctgtcagcac tgcggggact ggaaaatgca taggacgctc ctttcctttg ttgttagtta
     2041 ggttcggttt tgatatatag tgtttagttg catatatcaa attttgttat atactaaata
     2101 tacacctaca caaataaatt gtcaagtgat tatgtgcaaa ataaataaaa tagcttaaga
     2161 ccaaatagct taggacaaat ttttaaggtg taaacgtttt atagccttga aaaatatttt
     2221 cagagtagta aacttaataa cagtactaac attaagggaa tttctggact aaaagagaat
     2281 gacctcagat ggattagtag tatttaaggt ggtgtaaaga tgaaactata tgttcagttt
     2341 atgattattc tggtattttc atttttaggg gaagctattt cgactatttt tcatcttcct
     2401 attccgggaa gtatcattgg tttaatcctc ctattcttag ccctagagtt caaattaatt
     2461 cgtcttcgcc acattcatac ggttggaaat tttttgctgg ctaacatgac cattcttttt
     2521 ttacctgcag cggttgggat tatggagaga tttgatgcaa ttaaagatta tttacttcct
     2581 attatcatcg tcattttagg cgccattttt ttaaatatct tagtaattgg ttttgttgtt
     2641 caatttgtga agcaaaagtt tgaaggtgac tacattgatg cggagggaaa tcatgactga
     2701 acttttttcc aatcctattt ttggtattat gttatcaatt gcagcatatt taattggaat
     2761 gctgatttat cggagatttc ctcatccaat cacaacccca ctgttggtag ctacaggatt
     2821 gattattgtc tttttaaaaa tgacaggtat ttcctataag gaatattatg caggagggtc
     2881 ctatctaaat atgcttattg tgccttcaac agtagctctg ggtattcctt tgtatcgttc
     2941 tttccatcta atgaaacatc acattcgaag tattcttttg ggaatttttg ttgcctgtat
     3001 tgtcaatact gtctttactg ccctaattgc aaaatggttt gggatggatt tttttctagc
     3061 aatctctctt tttccaaaat cagtcaccac tgctatggct gttggtatta ctgataaaat
     3121 gcaaggaata gcaactgtta ctcttgtagt cgttgttgca acaggaattc tgacaagtgt
     3181 tcttggtcca gtctttttaa agctactaaa aattgaagac ccggtagctg ttggtcttgc
     3241 tttgggagga acaggacatg ccattggaac gggtacagcg ataaaatatg gacatacgca
     3301 aggagcgatg gctggcttgg ctattgggat tacaggcatc atgtatgtgg tgattagtcc
     3361 aatagttgcg cagattatct tacaataaaa aactacgatt ggaattccaa ccgtagtttt
     3421 tttagtctac ataaagtttg gattgattat tcaaccaact ataaagaagt ccgataaaga
     3481 gaccgccacc cacgtagttt cctaatccag aaaagaggaa attgcttagt acacttaata
     3541 gagtcattcc ctcaactggt ccaccatttg caaaaaaggc cagggagaag agtgaaaagt
     3601 tcgcaatgac gtgctcatat cccaagaaag caaagataaa gatgatgaaa ataacggaaa
     3661 tgagacgccc agcgtcatct ttgatgcgta agaaggtaaa tacaccgata ttcacgacaa
     3721 tattagcaaa aataccttca ataaattggg tcaaaggtgt ctttgaaagc ttggccaccg
     3781 ttgcttcaaa taggtagctg tgagcatcaa cgtgctgata aggcagagtc agtgagacca
     3841 agtaacaaac aaggaccgca ccgacaaagt tgaaaaggat acaggttgcc aacatcctga
     3901 gggctgtttt cgtaggaatc gtttttcgat ggctggctac tgtcatatac atcatgttgg
     3961 atgttccaag ttcggcattc atatataaaa tcatgagtag cccccaacca aacatcaacc
     4021 catagctaaa tttcccgagt ccttctgcga catggttgag tttgtctgct gtataaagag
     4081 aaatgacaat ccccaatcct aaataaagac tggctagtat cgatcgtaca gcgtaggcag
     4141 aaaaactgtg ttcaaacaaa tctgcttttt tcttgatact cttttcaagt gtatacatta
     4201 atgtctcttg gttagctccc atcctaatct ccttattgaa tctactactt tttcgagtaa
     4261 acgttttctt tttatcgaat ggctttactt tgtttattat acttgataaa atggttgttg
     4321 tccaaaaaaa attcaacttt tgaaaggaaa tataagaaaa atatggatgt tacatggaca
     4381 gtgaaatata tcactgaatt tttagcgact gcactcctta ttatcattgg taatggtaca
     4441 gttgcaaacg ttgatttaaa aggcacaaag ggaaacaact ctggttggat tctcattgcg
     4501 attggctatg gtttggcagt tatgatgcca gcattgatgt ttggtaacgt ttccggtaac
     4561 catatcaacc cagccttcac acttggtttg gctgtttcag gtctcttccc ttgggctcac
     4621 gttgctcaat acattgttgc ccaattgtta ggtgcaatgt ttggtcagtt agtggttgta
     4681 gcagtgtata aaccttactt cttgaaaact gaaaattcta accatattct tggctcattc
     4741 tcaactatca gtgcgcttga taacggaacg aaagaaagcc gtaaagctgc gacaactaat
     4801 ggtttcttga atgagttcgt tggttcattt gtattgttct tcggtgccct tgctttgacc
     4861 aaacatttct ttggttcaga gttggttggt aaattgattg aacagggcta tgataaaaca
     4921 gtcgctgaga caatgactgc tccatatact tcaggttcaa ttgcagttgc tcacttaggc
     4981 attggttttc tagttatggc acttgttgcg gctcttggtg gtccaacagg tcctggtctt
     5041 aacccagcgc gtgaccttgg tccacgtatc gtccatgccc ttcttccaaa atctgttctt
     5101 ggtgaaaaca aggctgattc aaaatggtgg tatgcttggg ttggtgtatg tgctccaatt
     5161 atcgcatcaa ttgccgctgt tgcacttttc aaattcttgt atctataata tagagaaccc
     5221 gtttcgtcgg gtttttcttt ttctcttggt atatcctata taaagttgtc tgctctgcta
     5281 ttttcctaaa agttatgcta caataaggat agaaaaatcg gaaaagaggc tagaatatgt
     5341 cagatgttat tgcttttggc tatggaagca gtcgagcgga gatgcagctc aagcggctca
     5401 atcgtcatgg aatcatcgca ggtgcgacag gtacagggaa gaccgtgacc ttaaaggtct
     5461 tggcagagca gttgagtgat gcgggaattc ccgtctttct atcggacatc aagggtgatt
     5521 tgaatagttt ggttgcggcc aataccaagg agattgatcc tagtcgtcta gagaagactc
     5581 attatcttga ctatagccca gtcggttatc cagttgagtt gtgggatgtc ttgggggaaa
     5641 atgggactcc tatccgcatg actatttcag agctgggacc tgtcctactg acacgtttgt
     5701 tgggcttgaa tgatactcag gagtccatct tgaatatcgt tttcagcgtg gcagacgagc
     5761 gtggccttct cttgattgat ttgatggacc tacgggctat gctcaatttt gtggctgaaa
     5821 atgcggcaga gctgagccaa tattatggaa atattccagc tcgttcagtt ggtgccatct
     5881 tgcgtagctt ggttgttttg gagcaacaag gtggtaagat tttcttcggt gagccaagcc
     5941 ttgatattgc tgatttgatg cgtacggcag aagatggccg tggggttatc aacgttctcc
     6001 aagctactca gctattcaat caaccaactc tttattcgac agtcctgctt agcctcttat
     6061 cagaactcta tgaagtcttg cctgaggtgg gcgatttgga caagcctaag atggtcttct
     6121 tctttgacga ggctcatgtt ctcttcaaag atgctccaaa agttcttctt gaaaagattg
     6181 aattgattgt ccgtttgatt cgttcaaaag gtgtaggtgt cttctttgta acgcagaatc
     6241 cgacggatat tcctgatagc gtggcagccc agttgggcaa ccgcatccaa catggtcttc
     6301 gcgcctttac accaaaagag cttaagacag tcgcgacagt tgccgaaacc ttccgtcaag
     6361 aaggtgatga ggatttggcc aaggtcattc aggagttgca ggtaggtgaa gcggttgtgt
     6421 ctactctgca agctgacggg acaccaagct ttgcggatcg ggttttgatt tatccaccaa
     6481 agagtatgct gggaacggtg gagccaagcg ccctcttgtc agttatcaat aattctcctt
     6541 tgatggaaaa atatgctgac gcggtcaatc gtgagtcagc ccatgagcag attttagcca
     6601 tgacagaggc taaagaagcc gaactcatta aaaaagcaga gcaggccgaa gcggaaaaac
     6661 aggcagaaaa agaagctaag gcagccgcaa aaatggaaga gaaagcccag aaagaagcag
     6721 ctaaagctgc acaaaaaact agtcagccag ccagtcgcaa aacagattcc atgatggatc
     6781 gctttaccaa gaacctgatg agtcaggtag gacgggaagt tgggcgcgtg gtaactcgtg
     6841 gcattatggg catgttaaaa gggaaataaa cgactagact gagaaggaaa cttctcagtt
     6901 ttttatctag acaaagttct tgccagatgc cacaaaattc gttaaaataa acgtaaatca
     6961 ctagttagta aggagttacc gtgactgatc aattgcaggc attattgaaa gactatcagc
     7021 cccagccatt aggtgaaaaa cgttcttatg cagttttctt gcctctagta tggtcagatg
     7081 atcagtggca agttctatat gaaattcgga gcgagtccat ttctcagcca ggagaagttt
     7141 cctttccagg tggcggaatt gatgaaggcg agacagcaga agaagctgcc attcgtgagg
     7201 ttatcgaaga acttgacatt caacagaaac aaattgagtt gctgggagaa attgattatc
     7261 tcgttttcgg tcgctcgacg attcgctgtt ttgtcggtcg acttcacttg gactggcaga
     7321 cccttcaacc caatgatgaa gtggctcgat tctttacagt tccactagaa accttgctga
     7381 aaacggcccc tgtctattat caactggatt cacagattgt tccagattgt gactttccct
     7441 ttgagcgttt gagaggtggg gttgactatc ctttcagtca tcacaaacgc tccgttccct
     7501 tttatgaaaa tctaccagaa aatatctggg gaatgaccgc tcaatttacc cattgttttg
     7561 tggaaatagt gaagagtaat ctatcgtgaa atgataggtt atttttagga ggaaaaacca
     7621 gcctttgcga tatgtatcag cgaaaaaaat ggagataaag ctcaatgtga gtaatgtata
     7681 gaaaaacaca aaaaaaaaca gatgcatggc agataaaaga tagctatggc tggtatactt
     7741 ggtacggtcc atatttttaa gtaccatcat ctatccagga atgcgacaat attcatgtaa
     7801 acgcattcag tggcttgttg tcatttccat gtagatgagt gggaaaatgt ataaatctat
     7861 attttaagaa ggagccaatt atgagcaagc agaaagttgt gtccagttta ttattaagca
     7921 cagtcgtatt agggggatta gccttttatt caacgacaac ggttaaagca gaatcgctag
     7981 aaccagatgt tacatcagtt agttcaagcg atgctactaa taaactggta gtatcaaatg
     8041 aagaggaaag cgacttttta gccgaagaag agcttgaaga gagcgatgct ccagtagaaa
     8101 ctctaaatga agaaatcaaa gatgtcacag agccatcttc acctgaagca cttctccaac
     8161 ctcgtgcgat gatgagcgat tctatgagta gcggtatgga agaaattcag gtgaaagacg
     8221 agccttcaga taatacggca gaaaaggtag tgaagcaaca gtcggaccta attcaatcat
     8281 cgagcgcgga ctcctttaag aatggaaagg acaaagagaa actcgagtct tcagtgtcta
     8341 tagacttgtt gagttcagaa aacaatgaga taaaatggaa agtaagtttt gacacaagtg
     8401 catggtcttt taattatcat catggaggtc tttattttat tcttccggaa ggtttgaatt
     8461 taaagagtgt taaagctaat actaatgatg aattatttaa tcgattccct aataaggtag
     8521 atagtactaa taatggtgat ggagcaccat tccgtttctt taataaagaa gaaaacagcg
     8581 atagctttaa taatcaatgg gggtggtcag cagggcaagc tcctaatgaa atgattaata
     8641 actggaaaac aggaaatcgt ttttctaaga tttactttat agataaaata acagatacta
     8701 gacaggtaac ctatacttta actgctagtg tgactgattc aaatcaaaaa tcattcccac
     8761 ttgtagcagt gatgaagagc ttttggtata caaactcgca aggaacgcag attacttcat
     8821 tagctggtcg tgagattacc cttgagaaag aaaaacctct accacctaaa gagactccag
     8881 cgccagaagc tccgtcaact cctgaaaagc aaccggaatc tccaaaggaa gatcctaaga
     8941 aggaagatac tccggaggtt tcaccaaaac cagaagcgcc aacaccagac gcaccaaaac
     9001 aggacgttcc agaaactccg gataagcaac cagaagaaat gcctaaagtt cctgaagcac
     9061 cgaaggaaga cgctccagct ccagcgccat cgactccatc agtaccagaa gaaaaaccaa
     9121 aggaagattc gaaaccagaa gtgccatcag caccggaagc tccaaaggac gctccatcaa
     9181 ttccggaaaa acaaccagac gctccacaag ttccattgac tcctgaagaa aaaccacaag
     9241 taccggaagc accaaagcaa gacgatgtcc aaccagacgc tccacaagta ccggaagcac
     9301 cacaacaaga cgacgtccaa ccagacgctc cacaagtacc ggaagcaccg aaggaagaag
     9361 ttccaacccc accggctcca tcagtaccag aagagcaacc aaaagaaact ccaacaccag
     9421 aagttccaaa acaagacgat gttcaaccgg aagcaccaaa atctgataaa gtagaaactg
     9481 acaaacaaat gccagaaact aagcaaccag atatgaagca
//
LOCUS       DASFRC010000085         9519 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.085, whole genome shotgun sequence.
ACCESSION   DASFRC010000085 DASFRC010000000
VERSION     DASFRC010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9519)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9519)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9519
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.085"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            105..305
                     /locus_tag="U1087_001400"
     CDS             105..305
                     /locus_tag="U1087_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HEM4755872.1"
                     /translation="MSLGALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGV
                     FLGVAFIEGTFFVTLAMTFVLK"
     gene            342..1058
                     /gene="atpB"
                     /locus_tag="U1087_001401"
     CDS             342..1058
                     /gene="atpB"
                     /locus_tag="U1087_001401"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HEM4755873.1"
                     /translation="MEEHLSPTLTLGPVTFDLTMVLVSVITISIIFLLVFWASRRMEL
                     KPKGKQNVLEYVYELTINFTKGNLGDAEAKRYSLFFFTVFTFLLVANNLGLMTKLETA
                     EGHNLWTSPTANMAYDFGLATIATVFCHVEGIRRRGFKAYLKSFVTPWAMAPMNILEE
                     VTNLVSLALRLYGNIYAGEVLVSLLLQLSQQSALAYPIAFALNVVWTAFSVFISCLQG
                     YVFIMLVSMYLNKKISSESE"
     gene            1076..1582
                     /gene="atpF"
                     /locus_tag="U1087_001402"
     CDS             1076..1582
                     /gene="atpF"
                     /locus_tag="U1087_001402"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HEM4755874.1"
                     /translation="MATTITMQSSTILGNFILVTVSFAVLIILIRVFAWDKITGIFEE
                     RANKIANDIDAAEEKLTAAANLVQQREDELVQGRIESQKIIQDAVERAKLEKKRILEQ
                     ADVEIQGLKQKAQLEIEAEKREAQENLRVQVAELAVDLASKIILEDLDQQAHSNLIDR
                     YLDKLGDK"
     gene            1583..2116
                     /locus_tag="U1087_001403"
     CDS             1583..2116
                     /locus_tag="U1087_001403"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HEM4755875.1"
                     /translation="MNARENAIVQKYALSFVEKVSDHADIWDMYDQISDLISIIHDSK
                     LNRILLSATVSREEKADFVRTVRQSSFWQINDLIEDVIRDGHADLLLETLERVQLQIS
                     KFKNEFEARVVSVYPLTEPQKERLRHLVEQRFSLRVRNITEELDQSLLGGFIVTVNHK
                     VIDASVRTQLKDIRKKL"
     gene            2120..3640
                     /locus_tag="U1087_001404"
     CDS             2120..3640
                     /locus_tag="U1087_001404"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011889023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEM4755876.1"
                     /translation="MESGVLLINAQEISALLKQQIEGFQPDFDYTETGVVTYIGDGIA
                     RAQGLDNAMSGELLVFENGTIGMAQNLETNDVGIIILGQFTDIREGSVVRRTGKIMEV
                     PVGSALIGRVINPLGQPVDGLGEIRTSKTRPIEYPAPGVMQRKSVNEPLQTGLKAIDA
                     LVPIGRGQRELIIGDRQTGKTSVAIDAILNQKGQDMICIYVAIGQKESTVRTQVETLR
                     QYGALDYTIVVTASASQPSPLLFLAPYAGVAMAEEFMYEGKHVLIVYDDLSKQAVAYR
                     ELSLLLRRPPGREAYPGDVFYLHSRLLERSAKVSDELGGGSITALPFIETQAGDISAY
                     IATNVISITDGQIFLKDDLFNSGIRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRIDLA
                     SYRELEAFTQFGSDLDAATQAKLNRGRRTVEVLKQPLHKPLPVEKQVLILYALTNGFL
                     DSVPIDDILAFEEELYAYFDLHYDGLLDVIRTTKDLPDTDELNAAIQAFKDQSVFK"
     gene            3652..4530
                     /locus_tag="U1087_001405"
     CDS             3652..4530
                     /locus_tag="U1087_001405"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000301235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HEM4755877.1"
                     /translation="MAGSLNEIKSKIASTKKTSQITGAMQMVSASKLAKSEQLAQSFQ
                     IYASKVRQITTDLLRGELMASDTSNPMLIRRPVQKSGYIVITSDSGLKGSYNSSILKA
                     VMGMIEQDHDSKDEYEIIAIGSMGADFFRARGINPVFELRGLADNPSFEEVQKIISKS
                     VEMYKNELFDELYVCYNHHVNSLTSQVRVQQMLPVEDLDHNEADGYTATFELEPNREV
                     ILEQLLTQYAESTIYGAILDAKTAENAAGMTAMQTATDNAKNVINDLTIQYNRARQAA
                     ITQEITEIVAGASALE"
     gene            4550..5956
                     /gene="atpD"
                     /locus_tag="U1087_001406"
     CDS             4550..5956
                     /gene="atpD"
                     /locus_tag="U1087_001406"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016398931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HEM4755878.1"
                     /translation="MSSGKITQVVGPVVDVAFAAEDKLPEINNALVVYKNDDSKQKVV
                     LEVALELGDGVVRTIAMESTDGLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDL
                     EESFPADFEREPIHKKAPAFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVG
                     KTVLIQELIHNIAQEHGGISVFTGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEP
                     PGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQP
                     TLATEMGQLQERITSTKKGSVTSIQAIYVPADDYTDPAPATAFAHLDSTTNLERKLTQ
                     LGIYPAVDPLASSSRALAPQIVGEEHYAVAMEVKRVLQRYQELQDIIAILGMDELSDE
                     EKTLVGRARRIQFFLSQNFNVAEQFTGMPGSYVPVAETVKGFKEILDGKHDHLPEDAF
                     RNVGSIEDVVAKAAKMKF"
     gene            5966..6382
                     /locus_tag="U1087_001407"
     CDS             5966..6382
                     /locus_tag="U1087_001407"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HEM4755879.1"
                     /translation="MGQMTVQIVTPDGIKYDHHAAFVLVKTVDGEMGVYSGHEELIAV
                     LEIGEMKVRRVDDENHVDWIAVNGGIIEVNKDIITVISDSAERERDIDISRAERAKLR
                     AERELEEAQTARNIDMEMRATVALQRAINRIRVGKH"
     gene            6442..6666
                     /locus_tag="U1087_001408"
     CDS             6442..6666
                     /locus_tag="U1087_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1146 domain-containing protein"
                     /protein_id="HEM4755880.1"
                     /translation="MVISILQFFSHILFIYLAHHLLVTTVDWSRWLKVTGDNQRKINL
                     LILFLAIALGYLVSTFFLELLMMGRSFANM"
     gene            6691..7974
                     /gene="murA"
                     /locus_tag="U1087_001409"
                     /pseudo
     CDS             6691..7974
                     /gene="murA"
                     /locus_tag="U1087_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637806.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
     gene            7967..8158
                     /locus_tag="U1087_001410"
     CDS             7967..8158
                     /locus_tag="U1087_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEM4755881.1"
                     /translation="MDKDNLSYVGKNLILVAVVLLIAILVFILGLMVGYGVIGDGDNV
                     FAVLSPAKWQELIGKFTGK"
     gene            8188..9027
                     /locus_tag="U1087_001411"
     CDS             8188..9027
                     /locus_tag="U1087_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HEM4755882.1"
                     /translation="MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYV
                     NQSKASEGTPSQELASSVLTEDVKKQLGNSIEWNGAGAFIINGNQTDLDASVASVPYG
                     DNKTKTVQGETVPTVANALLAKSTRQYKDREEIGNGRTSWTPAGWHQIHDLTGEYDHA
                     VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALD
                     KNKRVRYRVTLVYAESEDLVPVGSHLEAKAADGSLEFNVFIPNVQSGLSINYHSGEIA
                     VNQ"
     gene            9214..>9519
                     /locus_tag="U1087_001412"
     CDS             9214..>9519
                     /locus_tag="U1087_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM4755883.1"
                     /translation="MEKHVEQRVEDVTYNKAKLWQIILFAMNNSSTNIYLVAFTFVTY
                     LSTGVLGLAALFVSQLMGYIRIFDGFIDPTIGVIIDKTDTKFGKYRPILVLGNIITAA
                     "
BASE COUNT         2727 a         1695 c         2267 g         2830 t
ORIGIN      
        1 ttacaaaaaa cgaattaaac gcttacaatg gcggtatttt cttgacaaat agatgtttta
       61 ggagtatcct tacatggtat taaattttaa aaggagaatt cgttatgagt ttaggcgcat
      121 tggcccttgg attggcctgt cttggtgtaa gtatcggtga gggactgttg gtggcttcat
      181 accttagttc gactgcacgt caaccagaaa tgcaaagtaa attgatggct ggtgtatttt
      241 tgggtgttgc ctttatcgag ggaactttct tcgtaaccct ggctatgaca tttgtcttga
      301 aatagtagaa aatagagaaa tagaaaaggg gggaacctcc attggaagaa catttaagtc
      361 caacccttac ccttggtccc gtaacctttg acctgaccat ggtattggtt tctgtcatta
      421 ccatttccat tattttctta cttgtttttt gggctagtcg tcggatggag ctcaagccta
      481 aaggaaaaca gaatgttttg gagtacgttt acgaattgac catcaatttt acaaaaggga
      541 atcttggcga tgcggaagca aagcggtatt ccttgttctt ctttacagtc tttacttttc
      601 ttttggttgc caataatcta ggtttgatga ccaaattgga aacagcagaa ggacataatt
      661 tgtggacttc tccaacggcc aatatggctt acgatttcgg tttggcaaca attgcaacag
      721 tattttgtca tgttgagggt attcgtcgtc gcggtttcaa ggcatacctc aaatcttttg
      781 tgacaccctg ggctatggct ccaatgaaca ttttggaaga agtgaccaac cttgtgtcgc
      841 ttgctcttcg tctgtacggt aacatttatg ctggtgaagt gcttgtctct cttcttctac
      901 aattatctca acaaagtgca cttgcatatc caattgcctt tgctctgaac gttgtttgga
      961 cagcattttc tgtattcatt tcatgcttgc agggatatgt atttatcatg ttggtatcta
     1021 tgtacttaaa taaaaaaatc agtagtgaga gtgaatagga aagggaaaga caactatggc
     1081 aacaactatt acaatgcaat ctagtaccat tcttggaaac tttatcttgg taacagtatc
     1141 atttgcagta cttattattc ttattcgtgt ttttgcatgg gataaaatta caggtatttt
     1201 tgaagaacgt gccaataaga ttgcgaacga tattgatgct gcagaagaaa aattaacagc
     1261 agcagcaaac cttgttcaac aacgtgaaga tgagttggta cagggacgta ttgaaagtca
     1321 aaagattatt caagacgcgg ttgaacgcgc aaaactagag aaaaaacgta ttcttgagca
     1381 agcagatgtt gaaattcaag gattgaagca aaaagctcaa ttggaaattg aagctgaaaa
     1441 acgtgaagca caagaaaact tgcgtgttca agttgctgaa ttggcagttg atcttgcaag
     1501 caaaattatt ttggaagatt tggaccaaca agctcatagt aacttgattg accgttattt
     1561 ggacaaacta ggagacaagt agatgaacgc tagagaaaat gccatcgtgc aaaaatatgc
     1621 tctatcattt gttgaaaaag tcagtgatca tgcagatatt tgggatatgt atgaccagat
     1681 ttctgacttg atttccatca ttcatgatag taagctgaat cgaatcttgc tgtcagcgac
     1741 agtatcgaga gaagaaaagg ctgactttgt aaggacggta cgtcaatcta gtttctggca
     1801 aatcaatgac ttgattgaag atgttattcg tgatggtcat gcagacttgc ttcttgaaac
     1861 ccttgagcgt gtccaattac aaatcagtaa atttaaaaat gaatttgaag cccgtgtggt
     1921 ttcagtctat ccgttgacag aacctcaaaa agagcgtctc cgtcacttgg tagaacaacg
     1981 attttccttg cgtgtacgca atatcacgga agaacttgat caaagtctcc tcggtggttt
     2041 tattgtaacg gttaaccata aggtaatcga tgcaagcgtt cggacacagt tgaaggacat
     2101 tagaaaaaaa ctttaaaaaa tagaaagtgg tgttcttttg attaatgcac aagaaattag
     2161 cgctttacta aaacaacaaa ttgaaggctt tcagcctgac tttgactaca cagagactgg
     2221 tgtcgtaacc tatatcggtg acggtatcgc ccgtgcgcaa ggtcttgaca atgccatgag
     2281 tggagagctt ttggtatttg aaaatggcac cattggtatg gcacaaaact tagaaaccaa
     2341 cgatgttggt atcatcattc tcggacaatt taccgatatt cgtgaaggtt cagttgttcg
     2401 tcgtactggt aaaattatgg aagtaccagt tggttcggct ttgattggtc gtgtcatcaa
     2461 cccacttggt caacctgtgg atggtcttgg tgaaattcgt actagtaaga ctcgtccgat
     2521 tgaatatcca gcaccaggtg ttatgcaacg taagtcggtt aatgaaccgc ttcaaactgg
     2581 tcttaaggct attgacgctt tggttccgat tggtcgtggt cagcgtgaat tgattatcgg
     2641 tgaccgtcag acagggaaga catctgtagc tattgatgct attctcaacc aaaaaggcca
     2701 agacatgatt tgtatatatg tggctatcgg tcagaaagag tcaactgttc gtactcaggt
     2761 tgaaaccctt cgtcaatatg gtgctttgga ttacacaatc gtagtaactg catctgcttc
     2821 acaaccgtct ccattgcttt tcttggctcc ttatgctggt gttgcgatgg cagaagagtt
     2881 catgtatgaa ggcaaacacg tcttgattgt ttacgatgat ttgtcaaaac aagcggtagc
     2941 ttaccgtgaa ttatctctct tgcttcgtcg tcctccgggt cgtgaagcct atccagggga
     3001 tgtattctac ttgcacagtc gtttgctaga gcgttcagca aaggtttcag atgaattggg
     3061 cggtggctcc attacagctc taccatttat cgaaacacaa gcgggagata tttcagctta
     3121 catcgcgacc aacgtgattt ctatcacgga tggacaaatc ttcttgaagg acgatttgtt
     3181 caactcaggt atccgtccag ccattgatgc gggttcttct gtatcacgtg taggtggctc
     3241 tgcacagatt aaggccatga aaaaggttgc aggtaccctt cgtatcgact tagcttctta
     3301 tcgtgaatta gaagccttta ctcaatttgg ttcggatttg gatgcagcaa ctcaggccaa
     3361 actcaaccgt ggtcgtcgga ctgtggaagt attgaaacaa ccattgcata agccacttcc
     3421 agttgaaaaa caggttttga ttttgtatgc tttgacaaat ggcttcttgg attcagtgcc
     3481 aattgatgat attttggcat ttgaagaaga actgtacgca tattttgatt tgcactacga
     3541 tggtcttttg gatgttattc gtacaacaaa agatcttcct gatacagatg aattgaatgc
     3601 tgctatccag gctttcaaag accagtctgt ctttaagtaa aggagtgaat aatggcaggt
     3661 tctctcaatg aaatcaagtc aaaaattgca tcaactaaga aaaccagtca aatcaccggt
     3721 gccatgcaga tggtttcggc ttctaaatta gccaaatcag agcaattagc gcaatccttt
     3781 caaatctacg ctagcaaggt tcgtcagatt acaacggacc tcttgcgtgg agaattgatg
     3841 gcttcagata caagcaatcc aatgctgatt cgccgtccag ttcaaaaatc tggttatatt
     3901 gtcattacct ctgacagtgg actaaaaggt tcttataatt ccagtatttt gaaggctgtg
     3961 atggggatga ttgaacagga ccatgactca aaagatgagt atgagattat tgccattggt
     4021 agtatgggag ctgatttctt ccgtgctcgt ggtatcaatc ctgtctttga attgcgtggt
     4081 ttagcagaca atccaagttt tgaagaggtt caaaaaatca tttctaagtc tgttgagatg
     4141 tacaagaatg aactctttga tgagttgtat gtttgttata accaccatgt caatagtttg
     4201 accagtcagg tgcgtgtaca acagatgctt cctgtagagg atttggacca caatgaagca
     4261 gatggttata cagctacctt tgagttggaa ccaaaccgtg aggttatttt ggaacaactc
     4321 ttgactcaat atgcagaatc aactatttat ggagcgattt tggatgccaa aactgctgaa
     4381 aatgcagcag gtatgacagc catgcagaca gcgacggata atgctaagaa tgtcattaac
     4441 gatttgacaa tccaatacaa tagggctcgt caggcagcga ttactcagga aattactgag
     4501 attgtagctg gtgcctcagc ccttgagtaa tagaaataga ggaaatagaa tgagttcagg
     4561 caaaattact caggttgtcg gaccagttgt agacgttgcg tttgcagcag aagataaact
     4621 tcctgagatt aacaacgcac tcgttgtata taaaaatgat gattccaaac aaaaagtcgt
     4681 gcttgaagtg gctttagaac ttggtgatgg cgttgtacgg accattgcca tggaatcaac
     4741 ggatggattg acacgtggga tggaagttct cgatacaggt cgtcccatct ctgttccagt
     4801 cggtaaagaa acgctgggtc gtgtcttcaa tgtgttggga gataccattg accttgaaga
     4861 gtcttttccg gcagattttg aacgtgagcc tatccataag aaagcgccgg cttttgacga
     4921 attatctact tcaagcgaaa ttttggaaac ggggattaag gttatcgacc tcctagcacc
     4981 ttatctaaaa ggtggtaagg ttggtctctt cggtggtgcc ggtgttggta aaaccgttct
     5041 tatccaagaa ttgattcaca atattgccca agaacacggt ggtatctctg tatttaccgg
     5101 agttggcgag cgtacccgtg aagggaacga tctttactgg gaaatgaaag aatcaggtgt
     5161 tattgaaaaa acggccatgg tatttggtca gatgaatgag ccaccaggag ctcgtatgcg
     5221 tgttgctctt actggtttga ccattgcgga atacttccgt gatgtggaag ggcaggatgt
     5281 tcttctgttc atcgataata tcttccgttt cactcaggct ggttcagaag tgtctgccct
     5341 cttgggtcgt atgccatcag ccgttggtta tcagccaaca cttgcgacgg agatgggaca
     5401 attgcaggag cgtattacct caaccaagaa gggttctgtt acatctattc aggctattta
     5461 cgtacctgcg gatgactata cagacccagc tccagcgaca gccttcgctc acttggattc
     5521 aacaactaac ttggaacgta agttgactca gcttggtatc taccctgcgg tggatccatt
     5581 ggcttcgtca tcacgtgcac ttgctccaca aatcgttggt gaagagcact atgcagtagc
     5641 tatggaagta aaacgtgtcc ttcaacgtta ccaagaattg caagatatta ttgccattct
     5701 cggtatggat gaattgtcag atgaagagaa gaccttggtt ggtcgcgctc gtcgtatcca
     5761 attcttcctc tctcaaaact tcaacgttgc ggagcaattt acaggtatgc caggttctta
     5821 tgtgccagta gctgaaacgg tgaaaggctt taaggaaatc ttggacggca aacacgacca
     5881 tctaccagaa gatgccttcc gaaatgttgg ttcaattgag gatgtggtcg ctaaagctgc
     5941 taaaatgaaa ttctagaggt ggcttatggg acaaatgact gtacaaatcg taacaccaga
     6001 cggtatcaaa tatgaccatc atgcagcatt tgttttggtc aaaacggttg atggtgagat
     6061 gggtgtctat tctggacatg aagaactgat tgcagttttg gaaatcggtg aaatgaaagt
     6121 gcgtcgtgtt gatgatgaaa accatgtaga ctggattgcg gtcaatggtg gaatcattga
     6181 agtcaacaag gatattatta cggtcatttc tgattccgct gagcgggaac gggatattga
     6241 tattagtcgt gcggaacgtg ccaaattgcg cgcggaacgt gaattggaag aagcacagac
     6301 tgctcgtaat attgatatgg agatgcgtgc aacagtcgcc ctccaacgtg cgataaatcg
     6361 tattcgtgtt gggaaacatt aatctatatg ggattgaact tggttcagtt ccatttttta
     6421 atttcatggt ataatggaaa catggtaatt tcaattttac agttttttag tcatatattg
     6481 tttatctatc tggctcatca tctcttggtt acaacagttg attggtcacg gtggttgaag
     6541 gtgacggggg acaatcagcg taaaatcaat ttgctgattc tctttctggc aatagcactg
     6601 gggtacttag tctcgacttt ctttttagaa ttgttgatga tgggacgctc ttttgcaaat
     6661 atgtgattta agataagaaa aggataagaa atggatacaa ttattgttac aggtagtaaa
     6721 aacggtttga aaggacaggt tgagattgag ggggcgaaga atgccgttct gcctttattg
     6781 gcagcaacag ttctagcaag tcaagggtaa accaaattga ctcaggttcc tattttgtct
     6841 gatgtctata caatgaataa tgttgtacgt ggtctgggag ttcgtgtgaa atttgacgag
     6901 gaaacaaaga ctatcgatat tgatgcaaca ggtaaacttg gtagcgaaac tccttataag
     6961 tatgtgagtc aaatgcgcgc ctctattgtt attcttggtc cgattttggc acgcaatggt
     7021 tatgctaagg tttctatgcc aggaggttgt acaattggta gccgtccaat tgatttgcat
     7081 ttgaagggct tgcaggcact tggtgccaag attaaacaac gtgcgggtta tattgaggcg
     7141 agtgcagaga aattgcaggg ggctcatatc tatcttgatt tcccaagtgt tggggctacg
     7201 caaaatttga tgatggctgc aactctggcg cagggtacaa cggtattaga aaatgcagcg
     7261 cgagaacctg aaattgttga cttggctatt ttcttaaaca aaatgggggc caaagttaag
     7321 ggagcaggta cagagacgat tacgattact ggtgtagaag aattgactgg cgcagaacat
     7381 caagtggtgc aagatcgtat cgaagcgggt acctttatgg tggcagcggc aatgactggt
     7441 ggcgatgtct tggtcaagga tgctgtctgg gagcacaacc gtccacttat ttctaagatg
     7501 ttggaaatgg gagttgaggt gacggaagaa gctgaaggga ttcgagttcg ttcgcaagtg
     7561 gataagctta aacctgtaac agtaaaaact ttgccacacc caggcttccc aacggatatg
     7621 caggctcaat ttacagctct aatggcagtt gcaaagggtg aatctaccat gattgaaaca
     7681 gtatttgaga atcgtttcca gcatttggaa gaaatgcgtc ggatggattt gcattcggaa
     7741 attttacgag atacagctat catcacggga ggacttgctc tgcaaggtgc tcaggttatg
     7801 tctactgatt tacgagcaag tgccgctttg attctggctg gtttggttgc tgaaggtgag
     7861 acgattgtag gtaaattaac gcacttagat cgaggttact atcgttttca tgagaaatta
     7921 gctgctttag gtgcaacgat tgaacgtgtg agtggagaag atgaaaatgg ataaggataa
     7981 tcttagctat gttggtaaaa atttaatctt agtagcagtt gttttgttga ttgctatttt
     8041 ggtgtttatt ttaggattaa tggttggtta cggtgtcata ggagatggag acaatgtatt
     8101 tgcggtgttg tcaccagcta agtggcaaga actaatcggt aaatttacag gaaagtaggc
     8161 tggacctgct tttttgatgg agagaaaatg gcgaagaaaa atgtaaaaaa acaagcaatg
     8221 agtctgctca gcttattggc tacgattgtt gtagtagcgg gtggctatct tttaagtgat
     8281 aacaagagca gtaacgttgc tgattattcc tattatgtca atcagtctaa ggcaagtgaa
     8341 ggcacaccta gtcaggaact ggctagttcg gtattgacag aagatgtaaa aaagcaactg
     8401 gggaattcga ttgaatggaa tggcgctgga gcatttatta ttaacggtaa tcaaacggat
     8461 ttagatgcat cggttgccag tgttccttat ggtgataata agacaaaaac agtccaggga
     8521 gaaacggttc caacggtagc caatgcgctt ttagctaaat ctacacgtca gtataaggac
     8581 cgtgaagaaa taggaaatgg tcggacttct tggacacctg cgggttggca tcagatccat
     8641 gatttaactg gagaatatga ccatgcagtg gaccgtggtc acctcctagg ttatgctttg
     8701 attggtggat tgtctggctt cgatgcttca accagcaatc ctaagaatat tgcagttcaa
     8761 acagcttggt ccaaccaagc taacgaccaa acttcaactg ggcagaatta ttttgaaagt
     8821 cagattcggc gggccttgga taaaaataag cgtgtccgct atcgtgtgac cttggtgtat
     8881 gctgagagtg aagaccttgt tcctgtcgga agccatctag aggcaaaagc agcagatggt
     8941 agcttagagt tcaatgtgtt cattccaaat gtgcagagtg gtctcagtat caattatcat
     9001 agtggggaaa ttgcagtaaa tcaataaata gtcagatgaa ttcttcctcg ctaaatcaaa
     9061 tatatcagac gattttcacg tgaaatcgtc tttttttgcg tgtaattaaa aatatttaca
     9121 aaaacagttg acaaatcatc tgatgaatat tagaatatag ttaaagaaaa cgcttacgac
     9181 tttgtcgtag aaaacattta ggaggaattt ccaatggaaa aacatgttga gcaacgtgtc
     9241 gaagacgtta cttataacaa agccaagtta tggcaaatca tattatttgc gatgaacaat
     9301 tcatcgacga atatttactt ggttgctttt actttcgtga cttatttatc gacaggtgtg
     9361 cttggtcttg cagccctgtt tgttagtcaa ctcatgggct atattcgtat ctttgatggt
     9421 ttcattgatc ctacaatcgg agttatcatt gataaaacgg atactaagtt tggtaaatat
     9481 cgtcctattt tggttttggg gaatatcatt acagcagct
//
LOCUS       DASFRC010000086         8948 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.086, whole genome shotgun sequence.
ACCESSION   DASFRC010000086 DASFRC010000000
VERSION     DASFRC010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8948)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8948)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8948
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.086"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            89..790
                     /locus_tag="U1087_001413"
     CDS             89..790
                     /locus_tag="U1087_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HEM4755884.1"
                     /translation="MKKYAFREGMRDAIPTVLGYASIGLACGVVSVNSGISTVEMGLM
                     SLLIYAGSAQFVMCAMIFAGAPLLSIAVTVFFVNLRNFLMCLHATTIFQGNRLGSNIL
                     IGSFVTDESYAVLLRKQIEHHTITPEWMYGNNFASYASWVTFTTLGNLIGGLIPNPEQ
                     LGLDFALVAMFVGIFAGQLEAMVRTIPLKKIGLILLAVVLAYIGLSMMVSSYVAVLLA
                     TLLGCFVGVMIDDKN"
     gene            777..1100
                     /locus_tag="U1087_001414"
     CDS             777..1100
                     /locus_tag="U1087_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlD domain-containing protein"
                     /protein_id="HEM4755885.1"
                     /translation="MIKTNILLIILMAALVTWVPRVLPFVLTQNKSLPPKLVKFLSFL
                     PITIIFALTLSSIMDEKVGSLPSFLPVESLAILPTFFVVLKTKNILLAVLVGVVTTAL
                     LRLIF"
     gene            1110..2132
                     /locus_tag="U1087_001415"
     CDS             1110..2132
                     /locus_tag="U1087_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family putative sulfate export transporter"
                     /protein_id="HEM4755886.1"
                     /translation="MVKENAKGVGLCFLLALVGQWLGHLFPLVGGPVFALLIGMSLYP
                     YFSSKNAFQSGLTFTSKKILQYAVICLGFGLNLSAVLTVGRQSLPIILSTISFALILA
                     FLMWKILPISSHLATLIGVGTSICGGSAIAATAPIIQADDEDVAQAISVIFLFNVLAA
                     LVFPSLATWLGFSTDSGQAFGMFAGTAVNDTSSVTAAASTWDSVYGLGSQTLDTAVTV
                     KLTRTLAIIPITTVLAIWQTRGKGVQADKKSFLTGFPTFILYFILASLITTIAGGFGI
                     GADWFAPLKSLSKFFICMAMVATGLRTNVFALVKNGRAALMVGLVCWFGVTALTLVWQ
                     AILGIW"
     gene            2594..2794
                     /locus_tag="U1087_001416"
     CDS             2594..2794
                     /locus_tag="U1087_001416"
                     /inference="COORDINATES: protein motif:HMM:TIGR01168.1"
                     /note="The YSIRK form of extended signal peptide directs
                     nascent proteins to the cross-wall site, while signal
                     peptides lacking YSIRK direct proteins instead to the cell
                     pole. A large fraction of YSIRK proteins are surface
                     proteins anchored by sortase-mediated processing of a
                     C-terminal LPXTG motif; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YSIRK-type signal peptide-containing protein"
                     /protein_id="HEM4755887.1"
                     /translation="MSYKDMFRKEQRFSFRKFSFGLASAVIANVIFGGAIANSPVVHA
                     NTVTEAQATAVSERIAIHTIYC"
     gene            2838..8804
                     /locus_tag="U1087_001417"
     CDS             2838..8804
                     /locus_tag="U1087_001417"
                     /inference="COORDINATES: protein motif:HMM:NF019202.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1542 domain-containing protein"
                     /protein_id="HEM4755888.1"
                     /translation="MVSVYTVETIATATDYLTADLVPEGYAIVSGLGEVTVTEKTDNI
                     FTVKVDKIAPEAVATTTTAESTTSETSTLIVPSDATTVASDVTKPASLTATQPIPVTS
                     EVAEAEVAPTTSEESAKPAERTVYLSYITQYVNEDRQVVDSKGHLVAVKTTDETAKTQ
                     VTVSVSKDVPAGYELVQAKPEITLQLVEKQINVLAFVVTKKSEEEEIAESQLSNRDVL
                     MRLSLEANLLADKALRQVAKEQAGNTELATAANKAKELATNDVLGSETKTEEELGEQV
                     KTVRASIENLAVEMLKVDEDGILTAMLDASITNQAPVITVKDSSTAIVPVPTTTTSPE
                     PDGDFTKPNKTGETDFPAFFVVAGKEFTEANSKVRFTATDADGSLSSLEIKTGNNYLI
                     SNEENATEHGLYGKADKNIGEAVIYGNFNVQKGEVVTWYVEANDGTVDGRRDFYLFSY
                     GVEKRSEIPVRKSVATGVTAADITNQLIVDLTKDGGTGRLNSKFETKFNANYVAVPTG
                     KNTTVTEDQKAGKQVWHEIEGELPITAGVHTVTVKSTNIHGQVVRNNITVELYKLKDI
                     SRDTVDQYTDNPVPIHAIVELGSTGDVGTVKLEGVLPESFKLENFNLKDDVATELAKR
                     NLEFVKAESVGVDGTVGTIRAKNGGKVEYTGSGNIDYRFVYSYMEGTETKTVDFTYTI
                     LFTDTQAPTVKPAYEYIRVVGEGYTISVPGMDNAYLNPDKINGRLDIYENNVRFEGTS
                     ALGKLGVTSVVSKLDDSGKDTSGNSDDQGGNSTKFNINIVGTAPATAGTGIYYLRVGD
                     DNYPSGPKGKKAADHPTNPNAAEENVSVTPITITFVDKVKPITPIPVADQAHLTPTEK
                     KAVVDAVKEANPGNAKLQALPESAFTVNSDGSVSVNYSGENVDGATDTIKNATTKLAG
                     TQNEAKAEIDRKLAENKKAIEEKRDEAIAEINDDIYLTDVQKEVAREAVTAAAGDALK
                     NLDTKATEAKENIDKATTVSEINNAKTDGEAALDNAEAVGEKSIDWTKEKERAKAEVE
                     NQSTDALKIINNNPNLSYEEKKAYFDNINATKETAIDNIDKAKDSGDITVAIEDAVKA
                     SETEVLKAAKQDALNKLEKDAAKAKEDVADNSNLTKEQLEKALEDIQNDLDKAKAAVN
                     EAATPDAVQKEEDKGVAAIAKDVLDATKQNALNQLEKDAARAKEDVAKNPNLTKEQLE
                     KALEGIQNDLDKAKTAINEAATSAAVQEEMNKGVTALAKDVLDAAKQDAKNKIDKEAE
                     SAKKAIDTNLNLTPEEKESAKKVIDTDAQAATAAIDKASTPDAVQVEEDKGVAAINLI
                     TAKADAKGAVAAKLADEIKKLEDKQAEAEKAIDASTMTEEEKAIAKKALQDVVDKGKA
                     ELEDAARVATNEIHEATTTEKAKAAALAGEKSLTDAGKKARDAVELAKDKELAKEAIR
                     TEEEEATKAVEKLAEDTRKAIEENPNLSDEDKQAEIKKLTDAVAKTLETIRDNATTAM
                     QEAEKAQALADLEKAKETQKIADKAAIDRLTILVKDGELEATKRDVLNQLEKDAARAK
                     EDIAKNPNLTKEQVDKALEDVQKDLDKAKTAINEAVTSDAVQAEMDKGVAALAKDVLD
                     AAKQDAKNKIAKDAAAAKEAIDANPNLSDAEKEASKKAVDADAKAATDAIDASTSPVE
                     AQSAEDKGVGSIAQDVLDAAKQDAKNKIAKEAESAKSAIDSNPNLTDAAKEAAKSEID
                     KAVEEAIVLINGVRTYQELEKIKLPMAALIKPAAKVTPVVDPNNLTEKEIARIKTFLK
                     ENNNLPEGTEINVSKDASVTIKYPDGTIDLLSPVEVVKQADKTAPTVANDGKGNIVIV
                     PSEKAVELVVSYVDNNGKSQTVVVTKGTDGLWTASNTVVIVDPVTGQVIVPGSVIKPG
                     TVVTAYSKDEVGNSSDSAEAEVVAVDENNSAAGVKVKSVTTNANNVEKKAKQLPNTGE
                     EANSATSLGLVALGLGLALLAAKRRRDEEA"
BASE COUNT         2925 a         1590 c         2059 g         2374 t
ORIGIN      
        1 atataagaat tcttgaaaaa cgagttgcaa tgtgagaaaa tgagagaata attcttcaat
       61 caattagtga ggggaaggga gataatgaat gaagaaatat gcttttcgtg aagggatgcg
      121 cgatgccatt cccactgtat taggctatgc cagtattggt ctagcctgcg gagtcgtatc
      181 ggttaattca ggcatttcta ctgtggagat ggggctgatg agcctattaa tctatgccgg
      241 gagtgctcaa tttgtcatgt gtgccatgat ttttgcaggt gcgcctttgt tatccattgc
      301 agtaaccgtt ttctttgtca acctgcgtaa ttttctgatg tgcttgcatg cgacaactat
      361 ttttcaagga aatcgtttag ggtcgaatat cttgatagga tcctttgtga cggatgaatc
      421 ctatgcagtt cttttgcgta agcagattga gcatcatacc attactccag aatggatgta
      481 cggaaataat tttgcaagct acgcctcttg ggttacattc acgactctcg gcaatctgat
      541 tggtggtctc attccaaatc ctgagcagct tggattggac tttgccttgg ttgctatgtt
      601 tgtcggtatt tttgcaggtc agttagaggc tatggttcgg accattccgc tgaaaaaaat
      661 tggcttaatt ctgctggcag tcgttctggc ctatatcggt ctgtctatga tggtgtcgtc
      721 ctatgtggca gtgctcttgg cgacactctt gggctgtttt gtgggggtga tgattgatga
      781 taaaaactaa cattttactg attattctaa tggcggccct ggtgacctgg gtgccacgcg
      841 tcctgccttt tgtcctgacg caaaataaat ctctccctcc aaagttggtg aaattcctca
      901 gctttttgcc aatcactatc atttttgcat tgaccctctc cagtattatg gatgagaaag
      961 ttggctcctt gccaagtttt ctccctgtgg aaagcttagc tattcttccg acattttttg
     1021 tggttttgaa aacaaaaaat atccttttag cagtcttggt tggtgttgtt acaaccgcgt
     1081 tgttacgttt gatattttag gaggttttta tggtaaaaga aaatgccaaa ggtgtaggac
     1141 tttgtttcct tttggctttg gtgggtcagt ggttaggtca tttatttcca cttgtaggtg
     1201 ggcctgtttt tgcccttcta attgggatga gcctgtatcc ctatttttca agtaaaaatg
     1261 catttcagtc aggcttaacc tttacttcca agaaaatttt acagtatgct gtgatttgtt
     1321 tgggatttgg attaaactta tcagcggtct tgacagttgg gcgtcaatct cttccaatta
     1381 ttctttcgac cattagtttt gctttgattt tggcattcct gatgtggaaa atcttgccca
     1441 tttcatctca tctggcaacc ttgattggcg taggtacctc tatctgtgga ggctctgcca
     1501 ttgcggcgac tgctcccatt attcaggcag atgatgagga tgtggcacaa gcaatctcgg
     1561 tcatctttct cttcaatgtc ttggcggctt tggtctttcc tagtctggca acttggcttg
     1621 ggttttcgac tgattcgggt caggcctttg ggatgttcgc cggaacggcg gtcaatgaca
     1681 cctcctctgt gacagcagcg gcttcgactt gggatagcgt atatggtcta ggcagtcaga
     1741 ccttagatac agcagtgacg gttaagctaa cacgaacttt agccattatc ccgattacaa
     1801 cggtcttagc aatttggcaa acccgaggga agggagttca agcagacaag aagtccttcc
     1861 tgacaggttt tccgaccttt atcttgtatt ttatcttagc tagtctaatc acaacgatag
     1921 cgggtggatt tggtataggg gcagattggt ttgctccgtt gaagtccctc tctaaatttt
     1981 tcatttgtat ggctatggtg gcgactggtt tgcggaccaa tgtttttgcc ttggtgaaaa
     2041 atggcagagc ggctctcatg gttggtctgg tttgctggtt tggggtaaca gcgttgacat
     2101 tggtctggca agcaattttg ggaatctggt aagagaaatg tgagtggaaa aagtccattt
     2161 tctacttcaa gcaatttttg aaaagtaaat cgcagtgccg cagggctttt tgtcgttcgt
     2221 tttttagtac cgttgaacaa ctcaaaacta gttagttttg tttaaaatgt aattgaattg
     2281 cctttttaag taggctgttt acacgatatt tgtcttcctt tatataaata tgatagattt
     2341 tcagtaaatt tttcaaaaaa acctcaaaaa taacagattt tttcttgtat ctttgaggca
     2401 taaggagtat aatggtgacg gtattcaagt agaaatttta tatactctgg atgaaaacat
     2461 tctgtctact ttaaaataaa taatctactg ggtatccttc tgctaagttt ttaaagcagg
     2521 aggtgtgttt ttgtacatgg tgttacagga accagaaatg atggcattcg ccagtaaaat
     2581 ataggaggat atcatgtctt ataaagatat gttcagaaaa gaacaacgtt tttcttttcg
     2641 taaatttagc tttggtctag cttcggcagt cattgcaaac gttattttcg gaggagcaat
     2701 cgcaaacagc cctgttgttc atgctaacac agtgacagaa gcacaggcaa ctgcagtgag
     2761 tgagcggata gccatccata ccatatactg ttaaaatcga ggatcaaaca ggtaaggttg
     2821 ttgaaacgaa agtgaaaatg gtttcagtat atacagttga gactattgca acagcaacag
     2881 attacttgac tgctgacctt gtgccagaag gctatgccat tgtatcagga ttaggtgaag
     2941 tgaccgttac tgaaaaaaca gacaatatct tcacagttaa agtagacaaa attgcaccag
     3001 aagcagtagc aacaactacg acagctgagt cgactacatc agaaacatca acattgattg
     3061 tcccgtctga cgcaacaaca gtagcatcag atgtgactaa gccagcaagt ttaacagcta
     3121 cgcaaccaat accagtgacg tcagaagtag ctgaggctga ggtagcacca actacatcag
     3181 aagaatcagc gaaaccagca gagcgtacag tttatcttag ttacatcaca cagtatgtca
     3241 atgaagacag acaagttgtt gatagcaagg gtcaccttgt agctgtaaaa acaactgatg
     3301 aaacagcaaa aacacaagta accgtttctg tatctaaaga cgtaccagca ggctacgaat
     3361 tggtacaagc caagcctgaa attactcttc aattggttga aaaacaaatc aacgttttgg
     3421 cttttgtagt aactaaaaaa tctgaagaag aggaaattgc tgagtcacaa ttgtcaaacc
     3481 gtgatgtctt gatgcgattg tctttagaag caaacttgct tgcggacaag gcactacgcc
     3541 aagtagcgaa agagcaagct ggtaacactg aacttgcaac agcagctaac aaagccaaag
     3601 aacttgcaac caatgacgtc ttaggaagtg agactaaaac agaagaagaa ctcggggaac
     3661 aagtcaaaac agttcgcgca agcatcgaaa accttgcggt tgaaatgttg aaagtcgacg
     3721 aagatggaat cttgacggcg atgttggatg caagtataac aaaccaagca ccggttatta
     3781 cagtaaaaga ttcaagtact gcaattgttc ctgtgccgac aacgacaaca agtccagaac
     3841 cggatggaga ctttacaaag cctaataaaa caggtgaaac agatttccca gcattttttg
     3901 ttgtggcggg taaggagttt actgaggcaa atagtaaagt cagattcact gcaacagatg
     3961 cagatggaag tttaagttcg ttggaaataa aaacagggaa caactatctt atcagtaatg
     4021 aagaaaatgc aactgaacac ggattatatg gaaaagctga caaaaatata ggtgaggctg
     4081 taatttatgg taacttcaat gtacagaaag gggaagttgt cacctggtat gttgaggcaa
     4141 atgatggtac tgtagatgga cgtagagact tttacttatt ttcttatggt gttgaaaaga
     4201 gaagtgaaat tccagttcgt aaatcggtgg ctacaggggt cactgctgcg gatattacca
     4261 atcagttgat agttgattta acaaaagatg gtggtactgg tcgtttaaat tctaaattcg
     4321 aaactaagtt taatgcaaat tatgtagcag tgccaactgg aaaaaatact acagttacag
     4381 aagaccaaaa ggctggtaaa caagtttggc atgaaattga aggggagcta cctataacgg
     4441 caggggtaca tactgttaca gtaaaatcaa ccaacattca tggtcaagtg gtaagaaaca
     4501 atattacagt tgaactctac aagttgaaag atatttccag agatactgtc gaccaataca
     4561 cggataaccc tgttccgatt catgctatcg tagagcttgg ttctacaggt gatgtaggaa
     4621 ctgtcaagtt agagggagtt ctccctgaaa gctttaagct tgaaaatttc aatcttaaag
     4681 acgatgtagc tacagaacta gctaagcgta atcttgaatt tgtgaaagcg gagtctgtgg
     4741 gtgtagatgg cacggtgggg actattcgtg ccaaaaacgg tggtaaagta gagtatacag
     4801 gttcaggtaa catagactat agatttgttt actcttacat ggaaggaacg gagactaaga
     4861 ctgtcgattt tacttatact atcttgttta cagatactca ggcaccgaca gtaaaacctg
     4921 catatgaata tatccgtgtt gttggtgaag gttatactat cagtgttcct ggtatggata
     4981 atgcgtactt gaatccagat aaaatcaatg gtcgtttaga tatttatgaa aataatgtta
     5041 gatttgaagg aacttctgca cttgggaaac ttggagtgac ctcagtggtc tctaagctag
     5101 atgatagtgg aaaagatacg tctggaaata gtgatgacca aggtggtaat tcgactaaat
     5161 ttaatataaa tatcgtagga acagctccag caaccgctgg tacaggtatc tattatcttc
     5221 gtgtaggaga tgataattat ccatctggtc caaaaggaaa gaaagcggcg gatcatccga
     5281 caaatccaaa tgcagctgaa gagaacgtaa gtgttactcc tattacaata actttcgttg
     5341 acaaggtgaa accaatcact ccaattccag tcgctgacca agcacatttg acgcctactg
     5401 aaaagaaagc agttgttgat gcagttaaag aagctaatcc aggtaatgct aagttacagg
     5461 cgcttcctga gtcagctttc acagtgaatt ctgatggtag tgtatcggtt aactatagtg
     5521 gtgaaaatgt tgatggtgcg acagacacta ttaagaatgc taccacaaaa ttggcaggta
     5581 cacagaatga agcaaaagct gaaatcgaca ggaaattagc tgaaaataaa aaagctattg
     5641 aagaaaaacg tgatgaagca attgctgaaa tcaatgatga catttattta acagatgttc
     5701 agaaagaagt tgctagggag gctgtcactg ccgctgctgg agatgctttg aaaaacttag
     5761 ataccaaggc gacagaagca aaagaaaaca ttgataaagc aacaactgtt tcagaaatca
     5821 ataatgccaa gactgatggt gaagctgctc tggacaatgc agaagcagta ggcgaaaaat
     5881 ctattgactg gacgaaggaa aaagagcgag caaaagcaga agttgaaaat caatcaacgg
     5941 atgcattgaa aatcattaac aataatccaa acttgtcata cgaagagaaa aaagcgtact
     6001 ttgataacat taacgcaact aaagaaactg caattgataa cattgataaa gctaaagact
     6061 ctggcgacat tacggtagca attgaagatg cagtcaaagc aagcgaaaca gaagttctta
     6121 aagccgctaa gcaagatgcc ttgaacaagc ttgagaaaga tgcagccaaa gctaaagaag
     6181 atgttgcaga caattcaaac ttgactaaag aacaattaga aaaagcactt gaagatattc
     6241 aaaacgatct tgacaaggct aaagctgctg ttaatgaagc tgcaacccca gatgcagttc
     6301 agaaagaaga ggataaggga gtagcggcca tcgccaaaga tgttcttgat gccactaaac
     6361 aaaatgcctt aaaccagctt gagaaagatg cagccagagc caaagaggat gttgcaaaaa
     6421 atccaaactt aactaaagaa cagttagaaa aagcacttga aggcattcaa aacgaccttg
     6481 acaaggctaa aactgctatt aacgaagccg caacttcagc cgcagttcag gaagaaatga
     6541 ataaaggtgt aactgcactt gctaaagatg ttcttgacgc agcgaaacaa gatgctaaga
     6601 acaagattga caaagaagct gaatcagcta agaaagcgat tgacaccaat ctaaacttga
     6661 ctccagaaga gaaggaatca gctaagaaag taatagatac cgatgctcaa gccgcgacag
     6721 ccgctattga taaagcgtca actccagatg cagttcaagt agaagaggac aaaggtgtag
     6781 cagctatcaa tttgattact gctaaggcag atgctaaagg tgccgttgct gctaagttgg
     6841 cagatgaaat caaaaagctc gaagataagc aagcagaagc agaaaaagcc attgatgcgt
     6901 caactatgac tgaggaggag aaagcaatcg ctaagaaggc tcttcaagat gttgtagata
     6961 aaggaaaagc agagcttgaa gatgcagcta gggtagcaac aaatgagatt catgaagcta
     7021 ctactacaga aaaagcgaaa gcggctgcac ttgctggcga aaagagcttg accgatgcgg
     7081 gtaaaaaagc tagagatgca gttgaattgg ctaaggataa agagttagct aaggaagcaa
     7141 tccggacgga agaagaagaa gctactaaag cagtagagaa gcttgcagaa gatacgcgca
     7201 aagctatcga ggaaaatcca aacttgtcag atgaagataa gcaagcggaa attaaaaagc
     7261 taactgacgc tgtggcaaaa actttagaaa ccattcgtga caatgcaact acggctatgc
     7321 aagaagcaga aaaagcacaa gccctagcag atcttgaaaa agctaaagaa acacagaaaa
     7381 ttgcagataa ggctgcgatt gataggttga ctatacttgt gaaagatggt gagcttgaag
     7441 ctactaaacg agatgtttta aatcagcttg agaaagatgc agccagagct aaagaggata
     7501 ttgcaaaaaa tccaaacttg actaaagaac aagtagacaa agcacttgaa gatgttcaaa
     7561 aagatcttga caaggctaaa actgcaatta atgaagctgt aacctcagac gcagttcagg
     7621 cagaaatgga taaaggtgta gctgcacttg ctaaagatgt tcttgacgcc gctaaacaag
     7681 atgctaagaa taagattgct aaagatgcag cagctgctaa agaagcaatt gatgccaatc
     7741 cgaacttatc agatgcagag aaggaagctt ctaagaaagc agttgatgct gatgctaaag
     7801 ctgcgacaga tgcaattgat gcttcaacaa gtccagtcga agcgcaatcg gcagaggaca
     7861 aaggcgtagg ttcaatcgcc caagacgttc ttgatgccgc gaaacaagat gcgaagaaca
     7921 agattgctaa agaagcagaa tccgctaagt cagccattga ctccaatccg aacctgacag
     7981 atgcagctaa ggaagctgct aaatctgaaa ttgataaagc tgttgaggaa gcgattgttt
     8041 taatcaatgg tgttagaact tatcaagagt tggaaaaaat caaacttcca atggcagctc
     8101 taattaaacc agctgcgaaa gtaacaccag tggttgatcc aaataacttg actgaaaaag
     8161 aaattgctcg tatcaagaca ttccttaaag agaacaataa cctcccagaa ggaacagaga
     8221 ttaatgtttc taaggatgct tcagtgacaa ttaaatatcc agatggaact attgatttgc
     8281 tatcaccagt agaagttgtg aagcaggcag ataaaactgc tcctacggtc gcaaatgatg
     8341 gcaaaggtaa tattgtgatt gtaccgtctg aaaaagctgt tgagcttgtt gtttcatacg
     8401 tagataacaa tggtaagtcg caaactgtag ttgttacgaa aggtacggat ggtttatgga
     8461 cagcaagtaa tacagtggtg attgtggacc ctgtgactgg gcaagtaatc gttccaggtt
     8521 ctgttattaa gccaggtaca gttgttacag catactctaa agacgaggtt ggaaatagtt
     8581 ctgattcagc agaagctgaa gttgtagcag tagacgaaaa taattctgca gcaggagtga
     8641 aagttaaatc agttactaca aatgctaata atgttgagaa gaaagctaag caattaccga
     8701 atactggtga ggaagcaaat tcagcaactt cactcggatt agtagctctt ggactcggat
     8761 tagcacttct tgcagcaaag agaagaagag acgaagaagc ttaagataag ctcttcctca
     8821 gaactctttt gggagccgca attttcctag aagatagtag tatgatactc tttcatagca
     8881 aggaaattcc ctcgctatga ttggcaggta tcagttatta tctatcgaac ccccaaaatc
     8941 caaagtca
//
LOCUS       DASFRC010000087         8845 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.087, whole genome shotgun sequence.
ACCESSION   DASFRC010000087 DASFRC010000000
VERSION     DASFRC010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8845)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8845)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8845
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.087"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..556)
                     /locus_tag="U1087_001418"
     CDS             complement(<1..556)
                     /locus_tag="U1087_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000191296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="reticulocyte binding protein"
                     /protein_id="HEM4755889.1"
                     /translation="MTQEQLLEMLRARLPRDQILLESFLRYQAVHFDEDWDSLIQNFT
                     TQRGIVTSPVQVVRFETEVFAFVEASPFDGVTDLSSYTQTFGQAGLKKLHQLSSDEKA
                     LVIEVALFNLATRFHLLDQEGAYQSISVASLLDKSKAANLVNVYRVANNLSDRISRDI
                     EQFLLTYEPELISTQETVEEREGAA"
     gene            complement(606..1157)
                     /locus_tag="U1087_001419"
     CDS             complement(606..1157)
                     /locus_tag="U1087_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014294879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755890.1"
                     /translation="MAWNYDTISKTLSDMALENYEDMVKAFLAMELSIKNKSLLDTLY
                     QDFRSIDDLSLVSDDLRLRADGYQEQLQEEVTDLLDKLYRTGEGASFIMEVIASNNIF
                     ETLSQYEVLNEEDYSSFTLETLQDIIQKELSLTSQDYFGDVTYLALQKDLLDQKSHFL
                     QQYVTTLMDKLPQEKDQSALVLD"
     gene            complement(1141..1332)
                     /locus_tag="U1087_001420"
     CDS             complement(1141..1332)
                     /locus_tag="U1087_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003093624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HEM4755891.1"
                     /translation="MEPKNIYTRDSDQDGLTDAQELALGTNPFSSDTDSDGLTDLEEV
                     QQGLNPIRQRKESSYGLEL"
     gene            complement(1333..6237)
                     /locus_tag="U1087_001421"
     CDS             complement(1333..6237)
                     /locus_tag="U1087_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006739811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM4755892.1"
                     /translation="MTKQCHHHFLVNQEKAEKHVFRKSKKYRTLCSVALGTMVTAVVA
                     WGGQVAQADEVVTPSQGKTVQLTENPATNLPEAQPTPVAEQTNSLASTGQSHGAITVT
                     VPHDVVTQAVNQATTEGVTTVQDQPMDLGNTTSASETSKQLDKAEADAAKQAEAITQV
                     TNTYKADKAAYEQDKTRVEQGNAALAVSHKEATQAGNALNSSVDTMVSEVKTQDKSAN
                     VTITTQTVTSGDGSTVSGYQDYTSAVAAIDKQNKDNLSKYESKKKDADAIVAKNLLIQ
                     KANEDGVAKAKADNEAIDKRNQAGQKAVDDENKAGQAAVDAHNKDQQKLVTDREAEIT
                     EITKRNKEKEEAAKKENDAIDAYNAKEMERYKRDLAEISKGEEGYISQALAQALNLNN
                     GEPQARHSADTRNPNRIVAKGDAMLGGYSKILDSTGFFVYDTFKTGETLSFTYQNLQN
                     ARFDGKKITKVAYDITNLVSPAGTNAVQLVVPNDPTEGFIAYRNDGTGNWRTDKMEFR
                     VKAKYFLEDGSQVSFTKEKPGVFTHSSLNHNDIGLEYVKDTSGKFVPINGSTIQVTNE
                     GLARSLGSNRASDLKLPEEWDTSYSKYAYKGAIVSTVTSGNTYTVTFGQGDMPQNVGL
                     SYWFALNTLPVARTVKPYSPKPHVTPKLEPVPEPVKVVPKTFNPKTFTPEPPVSFKEK
                     PLEKVTQPSLTLTKVTLPKEPKPEPLPKAPQVPTVHYHDYRLTTTPEIVKEVINTDQV
                     NLHDKTVAKDSTVIYPLTVDAFSPNRAKTTSLTFEDYLPAGYAFDKEKTQAENGNYTL
                     SFDAAKNFVTLTAKEALLQEVNKDLTKSYQLVAPKLYGSLQNDGATYSNSYQLLINKG
                     TPNAYTVTSNVVTVRTPGDGTTTSRIEPQKKNENEDGVVINDTVVALGTTNHYRLTWD
                     LDQYKGDRSSKETIARGFFFVDDYPEEVLDLVDKGTGITTPDGKAVSGITVKAYASLS
                     EAPKDIQDKLAHAKISPKGAFQVFMPNDNQAFYDQYVKTGTSLNLVTKMTVKDSLYGQ
                     TKTYRNKAYQVDFGNGYETDEVTNTLVSPTPKKQNLNKDKVDINGKPMVVGSQNHYTL
                     SWDLDQYRGIKADKAQIAQGFYFVDDYPEEALLPDDAGIQLVTTDGKAVSGVTVKTYT
                     SLSEAPKPLQAALSKRKIAPKGAFQVFMAEDPQAFYDSYVTKGQNITIITPMTVRESM
                     LNSGKSYDNVAYQVDFGQAYETNTVTNHVPKVTPHKTNTNKEGVSIDGKTVLPNTVNY
                     YKIVLDYSQYKDLVVTDDVLAKGFYMVDDYPEEALSLNADGIQVMDKAGTLVKGISVK
                     AYASLSEAPKVVQDAMAKRQFTPKGAIQVLSADDPKAFYEAYVNTGQTLVVTLPMTIK
                     NELTKTGGKYENTAYQIDFGLAYVTETVVNNVPKLDPQKDAVIDLSQKEKSLDGKEVA
                     LNQVFNYRLVGALIPGNRATPLIEYRFDDDYDESHDDYNGVYKAYTLVDVTLKDGTVL
                     PKGTEVTKYTLQHVDTSKGTVTISFDQEFLEKLAEESEFQADVYVQMKRSASGEVENT
                     VLHTVNGYTISSNTVKTTTPEPEPPTPNQPTPPQPPIPTQEPPVPASVLPNTGESQSL
                     LALVGGGLLLGLAYGLSKRKMEDN"
     gene            complement(6504..7097)
                     /locus_tag="U1087_001422"
     CDS             complement(6504..7097)
                     /locus_tag="U1087_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001012715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755893.1"
                     /translation="MNGDLLKLAAKNFEPLLKKKITIELGRKGQKTVLDILFSKDHFF
                     HLAGLHKLNDIHFSHKKSSLVFDDILDDRINSDLLESSLYYDKKGVRSRLEILSYLYD
                     GFTKPNLVVRKAKNFPIKGSKLRWSYLVEFYIDDMRLGEFFIDNYRSGHSNEFIGVSI
                     FEKSQKDYTVNQTKFTILSIYETDTVSGNREVLFTRM"
     gene            complement(7342..>8845)
                     /locus_tag="U1087_001423"
     CDS             complement(7342..>8845)
                     /locus_tag="U1087_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000656693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HEM4755894.1"
                     /translation="DLKELSEEGAYLALQELDNPFQNQTEDDALTMTVRYGYEVIDDK
                     PTLHHHIILEAKENQVIVAPMDGKVSLDGENIIITSGKGLNKAQLTLFNSHSGRVTDG
                     QKVKAGKVIGQTKDGAGLKVTYQKVDDDSEKLVYVNPAFYFPKVIQLQTTILPTIGQF
                     GGDEFSRAKAIYEYLKSQGATNQAIAAILGNWSVESSINPKRAEGDYLSPPVGATDSS
                     WDDEGWLSLNGPAIYNGRYPNILRRGLGLGQWTDTADGSRRHTLLLEYAKGKNQKWYD
                     LGLQLDFMLHGDNPYYTNWLKDFFKNSGSPASLAQVFLIYWEGNSGDKLLERQTRATE
                     WYYQIEKGFSQPNGGTAQSDPKALEAVRGDLYDKSIPGGGDGMGYAYGQCTWGVAARI
                     NQLGLKLKGRNGEKIPIISTMGNGQDWVATAARLGGDTGKQPKAGAIISFAGGGHGSP
                     TEYGHVAFVEKVYPDGSFLISETNVNGNPNYTFRKLSGVDSTISFAYTTK"
BASE COUNT         2330 a         1927 c         1771 g         2817 t
ORIGIN      
        1 cagctgcacc ctctctttcc tctaccgttt cctgggtgct tattagttca ggttcataag
       61 tgagaagaaa ctgttcaata tcacggctaa tacggtcaga caaattattg gccactcgat
      121 agacattgac caaattagca gctttgcttt tatccaaaag agaagctacc gaaatggact
      181 gataggcgcc ttcttggtct aagagatgaa agcgagtggc taggttaaag agggctacct
      241 caatcaccaa ggctttctca tcacttgata attggtgtaa cttctttaat ccagcttgac
      301 caaaggtctg tgtgtagctg cttaggtccg tcactccatc aaaggggctt gcctctacaa
      361 aagcaaaaac ttctgtttca aagcgaacca cttgaacagg tgaggtgact attcctcttt
      421 gggttgtaaa attttggata aggctatccc aatcctcatc aaaatggact gcttgatagc
      481 gtaaaaagga ttccaaaaga atctggtcac gtggcaatct tgcccgcaac atttcaagta
      541 attgttcttg agtcatatgt tcctccaatt aaaaaggggc tgagaggtat tctcagccca
      601 ctgctttagt ctaggaccaa ggcgctttgg tctttttctt gtggtaactt atccattaaa
      661 gttgtcacat actgttgtaa gaaatggctt ttctggtcta acaaatcttt ctgcagggcg
      721 agataggtca catctccaaa ataatcttga ctcgttaaag acaactcctt ttggataatg
      781 tcctgcaagg tctctaaggt gaaagacgag taatcctcct cattcaaaac ctcatactga
      841 gaaagggtct caaaaatatt gttggacgca atcacttcca taatgaaact agctccctca
      901 cctgttcgat agagtttatc caagaggtcc gtcacttctt cttgaagctg ttcctgataa
      961 ccgtctgctc ttaggcgcag gtcatcacta actaaagaca agtcatcaat gctcctaaag
     1021 tcttgataga gcgtatcaag aagtgacttg tttttgatac ttaactccat ggctaaaaag
     1081 gctttaacca tgtcttcata gttttctagt gccatatcag agagagtttt tgaaatcgtg
     1141 tcataattcc aagccataac tgctctcctt acgctgtcga attggattca agccttgttg
     1201 gacttcttca aggtctgtca gtccgtcact atccgtatca ctgctaaaag gattagtccc
     1261 taaagctaac tcttgagcat ccgttagacc atcttggtct gaatctcttg tgtaaatgtt
     1321 tttgggttcc atttagttgt cctccatttt gcgtttagaa agtccgtaag ctaggcctaa
     1381 aagaagtcct ccaccgacaa gcgccaagag ggattgactc tctcctgtat ttggtaagac
     1441 acttgctgga actggtggtt cttgtgttgg aataggtggt tgaggtggtg ttggttgatt
     1501 cggagttggt ggctctggtt caggagtagt tgttttaacc gtgtttgaac tgatggtgta
     1561 gccattgaca gtatgtaaca ccgtattttc tacctctcct gaagcactcc gtttcatttg
     1621 cacgtaaaca tctgcctgaa actcggattc ttctgctagt ttttcaagga attcctgatc
     1681 aaaactgatg gtaaccgtac cttttgacgt gtcgacatgt tgtagcgtgt acttcgtcac
     1741 ttctgtccct tttggtaaaa ccgttccatc ttttagagtc acatctacta aggtataagc
     1801 cttgtaaaca ccattatagt cgtcatggct ttcatcgtaa tcatcgtcaa agcgatactc
     1861 gatgagtggt gtcgcacgat tgcctggaat aagtgctccc accaaacggt agttaaagac
     1921 ctgattcaag gcaacttctt ttccatcaag gcttttctcc ttttgtgata aatcaatcac
     1981 cgcatctttt tgtgggtcta gttttggcac attattgacc actgtctctg tcacataagc
     2041 caaaccaaag tcaatctgat aagcggtgtt ttcatacttc ccaccagtct ttgtcagctc
     2101 attcttaatg gtcattggaa gggtcaccac taaggtttga ccagtattaa cataagcctc
     2161 atagaacgct tttggatcat cagcgcttaa aacttgaatg gctccttttg gtgtgaactg
     2221 gcgtttggcc atagcatctt gaaccacttt aggcgcttct gacaatgagg cataggcttt
     2281 caccgaaatc cctttgacaa gagttcctgc cttatccatc acttggatac catctgcatt
     2341 gaggctaagc gcttcttcag ggtaatcatc caccatgtaa aaaccttttg caagaacatc
     2401 atcggttacg accaagtcct tgtactgact gtaatcaaga acaatcttat aataattaac
     2461 ggtatttgga agaacggtct tcccatcaat agacacgcct tctttattgg tattagtttt
     2521 atgtggtgtt acttttggca cgtgattcgt taccgtattg gtttcatagg cttgtccaaa
     2581 gtctacttga taagctacat tgtcataaga ctttcctgaa ttaagcatag actcacggac
     2641 agtcatagga gtgatgatgg tgatgttttg acccttcgtt acataagaat catagaaggc
     2701 ttgcggatct tctgccataa agacttggaa ggctccttta ggcgcaatct tgcgttttga
     2761 aagagctgct tgcaggggtt taggggcttc tgataagctc gtataagttt ttaccgtaac
     2821 acctgacact gctttgccat cagttgtcac aagttgaatg cctgcatcat ctggtaatag
     2881 agcttcttcg ggataatcat ccacaaagta aaagccttgt gcaatctgag ccttatcagc
     2941 cttaatgcca cggtattggt ccaagtccca tgacaaggta tagtggttct gtgaaccgac
     3001 taccatcggt tttccattga tgtccacctt atccttatta aggttttgtt ttttaggtgt
     3061 tgggctaaca agggtattgg tcacctcatc ggtttcatag ccattcccaa aatccacttg
     3121 gtaagccttg tttcgataag tcttcgtctg accataaaga ctatctttga ccgtcatttt
     3181 ggtgacaagg tttaaagaag ttcctgtttt gacatactgg tcatagaaag cctgattatc
     3241 attaggcata aagacttgga aagccccttt tggagaaatc ttagcatgag cgagtttatc
     3301 ttgaatgtct ttaggagctt ctgacagcga cgcataagcc ttaacagtaa tccctgatac
     3361 ggctttgcca tcaggagtgg tgatacctgt ccccttgtct actaagtcca acacttcttc
     3421 tgggtagtca tctacaaaga agaaaccacg agcaattgtc tctttagaag acctatcgcc
     3481 tttatattga tctaaatccc aggtcaaacg gtaatgatta gttgttccta aagccactac
     3541 cgtatcgtta atgaccacac catcttcatt ttcatttttc ttctgcggct caatacggct
     3601 agtggtcgtt ccatcaccag gcgttcgcac cgtcacgaca ttggaagtca cggtataagc
     3661 atttggggtt cccttattga tgaggagctg ataactgttg gaataggttg ctccatcatt
     3721 ttgaaggcta ccgtaaagtt tcggagccac cagttggtaa gacttggtga ggtctttatt
     3781 gacctcttga agcaaggctt ccttggcggt caaggtcaca aagttcttag cagcatcaaa
     3841 gctaagggta taatttccat tttctgcctg cgttttttcc ttgtcaaaag catagcctgc
     3901 tggaaggtaa tcttcaaagg tgaggcttgt ggttttggct cgattgggag aaaaagcgtc
     3961 tacggttaaa gggtaaatga ccgttgaatc ttttgcgacc gttttgtcat gaaggttcac
     4021 ttggtcggta ttgataactt ccttaacaat ttcaggagtc gttgtcagac gatagtcgtg
     4081 ataatgaacc gtgggcactt gtggtgcttt tggtaacggt tctggtttag gttctttagg
     4141 caaggtcacc ttggtgagtg tcaaactagg ctgagtaact ttctctaatg gtttttcctt
     4201 aaagctcaca ggtggctctg gcgtaaaggt ctttgggtta aaggtttttg gcacgacttt
     4261 aactggttct ggaactggct ctaactttgg tgtcacatgt ggttttggac tataaggttt
     4321 aaccgtccgt gcaactggta gggtgtttaa ggcaaaccaa taagagagac caacattttg
     4381 gggcatatcc ccttgaccaa aggtcactgt ataggtgttg cctgatgtaa ccgttgagac
     4441 aattgctcct ttataggcat acttactgta agaagtatcc cattcttcag gaagcttcaa
     4501 atcactggca cggtttgacc caagtgaacg agccaaacct tcgttagtca cttgaatggt
     4561 tgagccattg ataggaacaa acttacctga tgtgtctttt acatactcta aaccgatgtc
     4621 attgtgattg agtgaggaat gagtaaagac acctggtttt tccttggtga agctgacttg
     4681 agatccatct tctaagaaat acttggcctt gacacgaaac tccatcttgt ctgttcgcca
     4741 attgcctgtc ccatcattac ggtaggcgat aaagccttct gttgggtcat ttggtacgac
     4801 taactgcacg gcattagttc cagctggaga aacaaggtta gtaatgtcat aggctacttt
     4861 tgtgattttc ttaccatcaa agcgagcatt ttgaagattt tgataggtaa aggaaagggt
     4921 ttctcctgtt ttaaaggtgt cgtagacgaa gaaaccagta gaatctagga ttttagaata
     4981 cccaccaagc atagcgtcac ccttagcaac gatacgatta ggatttctgg tatcagctga
     5041 atgtcgtgct tgcggttctc cattattcaa gttaagtgcc tgagcaagag cttgagagat
     5101 atagccttcc tctccttttg aaatctcagc taaatcccgt ttatagcgct ccatttcttt
     5161 ggcgttgtag gcatcaatgg catcattttc tttcttggcg gcttcttctt tttccttatt
     5221 gcgtttcgtg atttccgtaa tctcagcttc acggtctgtg actaatttct gttggtcttt
     5281 attgtgggca tcaacagcag cttgacctgc cttgttttca tcatccactg ctttttgtcc
     5341 agcttgattg cgtttatcaa ttgcttcatt atcagccttt gccttggcaa ccccgtcctc
     5401 atttgccttt tggattaaga gattctttgc gacaatggca tctgcatctt ttttctttga
     5461 ttcgtattta gatagattgt ccttattttg cttatcaata gcagctaccg cagaggtata
     5521 atcctgatag cctgaaacag ttgagccatc tcctgatgtt acggtttgag ttgtaatagt
     5581 tacgttcgca gacttgtcct gagtcttcac ttctgaaacc atagtatcta ctgaactatt
     5641 caaggcgttt ccagcttgag tggcttcttt atgactaaca gccaacgcag cattcccttg
     5701 ttcaacacgt gttttatctt gttcataagc agctttatct gctttatagg tattggttac
     5761 ctgagtgatg gcttcagcct gcttagcagc atccgcttcc gccttatcca attgcttact
     5821 ggtctcactc gcagaagttg tatttcccaa gtccataggt tggtcttgaa cagtagtaac
     5881 tccttcagta gttgcttgat tgacagcctg tgtcacaaca tcatgaggaa ccgtaaccgt
     5941 gatagcccca tgtgattgac cagttgacgc aagactattc gtttgttcag caactggagt
     6001 tggctgagct tctggtaagt tggtcgcagg attttctgtt agctgaacgg ttttaccttg
     6061 ggaaggtgtt accacttcgt cagcttgtgc tacttggcca ccccaagcga caacagctgt
     6121 caccatggtt ccaagagcta ccgagcagag cgtacggtac ttcttacttt tacggaagac
     6181 atgcttttct gctttttcct gattgactaa aaagtgatga tgacattgtt tggtcataaa
     6241 aagtccttct tttcttttga taagtagtaa caatctgtca ctctctcctc atcataaaaa
     6301 agacgacttg attttggtat cacatcaaaa aaggacaaag aaaaaaagcc atcggtagca
     6361 gtaccgatag cctctatgaa tacttataaa caaaagggga ggactgacgc atcagatcca
     6421 cccagacgtg actagcacgc cccaattcga taaccaaatg ataaaacctt ttccctactt
     6481 tgtcaaccta gatgctagga gaactacatt ctagtgaaaa gcacctctct atttcctgat
     6541 acagtatcag tttcatagat tgaaagtatt gtaaacttcg tttggttcac agtataatct
     6601 ttttgagatt tttcaaaaat actgacacca ataaattcat tagaatgacc acttcgatag
     6661 ttatcaataa aaaactcacc tagacgcatg tcatcaatgt aaaattccac caaataactc
     6721 catcttaatt tactaccttt gatggggaaa ttctttgctt ttctaacgac aagattaggt
     6781 tttgtaaagc catcatataa atacgacaaa atttctaaac gtgacctaac ccctttttta
     6841 tcataataca acgaagattc taataagtca gagttaatcc ggtcgtctaa aatatcatca
     6901 aaaactagag aagatttttt atggctaaaa tgtatatcat ttagtttatg aagtccagct
     6961 aagtgaaaga aatggtcttt tgaaaacaga atatctaaaa ccgttttctg tccttttcta
     7021 ccaagttcaa ttgtaatttt cttttttaat aaaggttcaa aattttttgc tgctaatttt
     7081 aataagtcac cattcatagt aatctttcta cgaaaaaagg attcatacga atcctttcat
     7141 cgagtgtttt cattgttggc tcgaggtgtt cacacacaac cctactaaag caaacactac
     7201 cagtcaaacc aaccgaccaa taatgcttaa cgcttagtaa atactcttgt tatctacaca
     7261 tatagtataa cctaactact tcctaatgtc aattaaaaca tcatataaag atttatctaa
     7321 agatgtattc ttccaaaaaa tttatttcgt tgtataggca aagctaattg tactatcgac
     7381 tcctgataat ttacggaatg tatagttagg attaccatta acattggtct ctgagataag
     7441 gaaagagcca tctgggtaaa ccttctcgac aaaggcgaca tgaccgtatt ctgttggcga
     7501 tccatgacct cctcccgcaa aggaaataat cgctcctgct tttggttgct tgcctgtatc
     7561 tcctccaaga cgtgctgctg ttgccaccca atcttgacca ttacccatgg tactgatgat
     7621 tgggattttc tcaccgtttc ggcctttgag tttcaatccc aattggttga tacgagcagc
     7681 tactccccac gtacattgcc cataggcata gcccataccg tcacctccac ctggaatgga
     7741 tttgtcataa aggtctcctc gaactgcttc cagcgctttt ggatcacttt gagcagttcc
     7801 accatttggt tggctaaagc ctttctcaat ttggtaatac cactctgtag ctctcgtttg
     7861 acgttctagg agtttatcac cactatttcc ctcccaataa atgagaaaga cttgggcaag
     7921 actggctggg ctacctgaat ttttgaaaaa gtcttttaac cagttggtat agtaaggatt
     7981 gtccccatgg agcataaaat ccagttgtaa gcctaagtca taccacttct gatttttccc
     8041 tttggcatac tctaataata aagtatgtct gcgtgaccca tctgcagtat ctgtccattg
     8101 ccccaagcct aagccacgtc ttaaaatatt cgggtacctg ccattataga tagctggacc
     8161 attaagggac aaccagccct catcgtccca agaactatcc gttgccccaa caggaggcga
     8221 taagtagtcg ccttcagctc gtttgggatt gattgaggat tctactgacc agtttcctaa
     8281 aatagccgca atcgcttgat tagtcgcccc ttgactcttc aaatactcat agatagcttt
     8341 ggctctcgaa aactcatcgc ctccaaattg accaatagtc gggagaatgg tcgtttggag
     8401 ttgaatgact ttaggaaagt aaaaggctgg attgacgtaa accagtttct ctgaatcatc
     8461 gtcaaccttt tgataggtca cttttagacc agcaccatcc ttggtttgac caatcacttt
     8521 ccctgctttg actttttggc catctgtcac tcgaccacta tgactattaa atagggtcag
     8581 ctgagcttta ttcagtccct tacctgacgt gatgataatg ttctctccat ctagggaaac
     8641 cttaccatcc atgggagcca caatcacttg attttcttta gcttctagaa tgatatgatg
     8701 atgaagcgtt ggcttgtcat caatcacctc ataaccataa cgaactgtca tggtaagcgc
     8761 gtcatcttca gtctgatttt ggaaaggatt atccaattct tggagggcaa ggtaggcgcc
     8821 ttcctcactt aattccttta agtct
//
LOCUS       DASFRC010000088         8643 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.088, whole genome shotgun sequence.
ACCESSION   DASFRC010000088 DASFRC010000000
VERSION     DASFRC010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8643)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8643)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8643
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.088"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            170..874
                     /locus_tag="U1087_001424"
     CDS             170..874
                     /locus_tag="U1087_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall-active antibiotics response protein"
                     /protein_id="HEM4755895.1"
                     /translation="MEKMRKVQFFLLIESMIFTMAAFDVVANEASRTLLLFSALLLVI
                     WYFLGRKVNSVLLVSSLSLLFSVFVLNPFFIIGIMLLVVYMLINFFSRYEKRNQYTHI
                     VFSDYSLQVQKEKNRWFGNHDHSQDRFGFEDINIVRLFGNDVVDLDKTVLVGRDNIVV
                     IRKTFGRTKIIVPIDVEVALSATSIYGRVSFLGESYWDLRNESIAVNSPDYQESHKRV
                     KVVTNNILGDVEVVRV"
     gene            871..1887
                     /locus_tag="U1087_001425"
     CDS             871..1887
                     /locus_tag="U1087_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEM4755896.1"
                     /translation="MRKRTYLLLAWFACLIVFVVIASTLPLLNYSLLDVTLWISTEQL
                     VFTLILLVIVLTLFLAVMVQTVSLASTQVMRTKLQAILKNKSIRTDTESDQLLLQLSD
                     KVRNLTRQVQLVDNQDLVKKEEIVEGERKRIARDLHDTVSQELFATSMILSGLSSNLS
                     TLPQETLQEQLMLVKDMIESAQRDLRILLLHLRPSELESKTLVEGFELILREVSDKSN
                     IIVHFQHEVEELPKLIEEHLFRIAQEIISNTLRHAKAKHLDVYLLQKETELQLKMTDD
                     GIGFQQGADDELSYGLQNIRERVEDMAGTIKIRTAPNKGVAIDIRIPLLKGKEDEYDS
                     SDAG"
     gene            1859..2500
                     /locus_tag="U1087_001426"
     CDS             1859..2500
                     /locus_tag="U1087_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM4755897.1"
                     /translation="MNTIRVMLVDDHEMVRLGLKSYLNLQPDVEVVAEASDGEEGLAK
                     ALEVKPDVIVMDLVMPKMTGVEATLALLKEWPQAQIVILTSYLDNEKIYPVLEAGARG
                     YMLKTSSADEILAAIRKVALGEYAIETEVEKKVEHHKRHPDLHDDLTAREREILTLLA
                     KGYDNQRIADESFISLKTVKTHVSNILSKLAVSDRTQAVVYAFQHGLVAQEDQ"
     gene            2550..3950
                     /locus_tag="U1087_001427"
     CDS             2550..3950
                     /locus_tag="U1087_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM4755898.1"
                     /translation="MDAKLRYKAKKIKIVFFDIDDTLRVKNTGYIPESIQQVFNSLKE
                     KGILTGIASGRTPYGLVPEIKALKPDFFAMINGSYVEDAKGQVVYHQPMPQNLVESVL
                     NWAKEIGIEYGMLGSQKGTLSARTDRISQVIDLIYEGLETNPTFYKENDIYQLLTFEK
                     DGHEVELPEELQAELRSVRWDAISSDIVLKGSSKATGVAKVVEKLGLKPENVLVFGDG
                     LNDIELFDYAGISIAMGHSHPELQKHADYITKKVEEDGIFDALEKLGMVEKEKYFPQL
                     DLENVTGPVAHIKTNHGKLTVKLFPEIAPKTVANFVALSKDGYYDGIIFHRIIKDFMI
                     QGGDPTGTGMGGESIYGTAFEDEFSMEAFNLRGALSMANAGPNTNGSQFFIVQNQNFP
                     YNAKELERGGWPKEVAEAYVKNGGTPHLDQRHTVFGHLVDEESFVVLDAIAAVATDSA
                     DRPHEDVVIETIEIED"
     gene            3952..4323
                     /locus_tag="U1087_001428"
     CDS             3952..4323
                     /locus_tag="U1087_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S1 RNA-binding domain-containing protein"
                     /protein_id="HEM4755899.1"
                     /translation="MKIGDKLKGTVTGIQPYGAFVQLENGTTGLVHISEIKTGFVDNI
                     YDHLKLGQEVLVQVVDFDEYTEKASLSIRTLEEEQQKIPRHHRFTNERNKIGFSPLAK
                     QLPKWIEEAKGYLKEHKEKKV"
     gene            complement(4349..5275)
                     /gene="cysK"
                     /locus_tag="U1087_001429"
     CDS             complement(4349..5275)
                     /gene="cysK"
                     /locus_tag="U1087_001429"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HEM4755900.1"
                     /translation="MAIYQNITQLVGKTPVIKLNNIVPEGAAEVYVKLEAFNPGSSVK
                     DRIALAMIEDAEKAGTIKPGDTIVEPTSGNTGIGLAWVGAAKGYKVIIVMPETMSVER
                     RKIIQAYGAELVLTPGSEGMRGAIAKAKEIAEEKNGWVPFQFANPSNPKVHEDTTGQE
                     ILEDFGTTGLDAFVSGVGTGGTVSGVSHVLKTANPDIAIYAVEADESAVLSGEAPGPH
                     KIQGISAGFIPDTLDTSAYVGIIRVKSDDALATGRAIGGKEGFLVGISSGAAIHAAIE
                     VAKELGTGKKVLAILPDNGERYLSTALYEFND"
     gene            complement(5365..5997)
                     /locus_tag="U1087_001430"
     CDS             complement(5365..5997)
                     /locus_tag="U1087_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HEM4755901.1"
                     /translation="MKEFKTIREDGIVEEEIKKSRFICFMKRVTSEEEARDFINKIKK
                     EHYKATHNCSAFVLGENMEIKRSSDDGEPSGTAGVPMLTVLENHELTNVATVVTRYFG
                     GIKLGAGGLIRAYAGAVANAVKEIGVVEVKEQEGISISMSYAQYQEFANWRTEQGLEE
                     FDTQFTTEVSTMIFVDKEFLEQTLASLTDFYHGKVSAEKANSRIVEVPVY"
     gene            6054..7346
                     /locus_tag="U1087_001431"
     CDS             6054..7346
                     /locus_tag="U1087_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM4755902.1"
                     /translation="MKELENYYGRLFTKYQLTAKEREIAEKVPSITKKNNCFRCGTTF
                     EEENKLPNDAYYCRACLLLGRVRSDEKLYHFPQKDFPITKCLKWKGQLTDWQQRISDG
                     LVANVKNNRATLVHAVTGAGKTEMIYHTVASVIDKGGAVCLASPRIDVCIELYKRLQN
                     DFSVPISLLHGESEPYFRTPLVVATTHQLLKFYQAFDLVLIDEVDAFPYADNPMLYQA
                     ADNAVKEDGVQVFLTATSTDELDKKVRTGKLSRLSLPRRFHGNPLVVPQKVWFSKFDD
                     TLKKNRLVPKLKKAIEEQRTSGFPLLIFVPEISKGQEFTKIMKKTFPEETIGFVSSQT
                     ENRLEIVEGFRKREITVLISTTILERGVTFPCVDVFVVQANHYLYTSSSLVQIAGRVG
                     RSMERPTGLLQFYHEGSTGAIEKAIAEIKQMNKEAGYV"
     gene            7339..8004
                     /locus_tag="U1087_001432"
     CDS             7339..8004
                     /locus_tag="U1087_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HEM4755903.1"
                     /translation="MSNCLLCAQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQ
                     HCPHCYKNGESESCKDCQYWQNQGKPVVHTALYRYNQAMAHYFSRYKFQGDYVLRNIF
                     AKKLRIALSQFPDYTIVPIPISQKRLLERGFNQVEGLLSATNIPYQSLLGKYESQKQS
                     SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFS
                     LTR"
     gene            8082..8624
                     /gene="raiA"
                     /locus_tag="U1087_001433"
     CDS             8082..8624
                     /gene="raiA"
                     /locus_tag="U1087_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000599099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HEM4755904.1"
                     /translation="MIKFSIRGENLEVTDALRTYVEEKVAKIEKYFNEEQELNAKVNL
                     KVYRDKRAKVEVTIPVGAVTLRAEDISQEMYGSIDLVVDKIERQIRRNKTKIERKHRQ
                     KVATGQVFTDELVEQTGEEVKVVRTKQVDLKPMDMEEAVLQLELLGHDFFIYTDANDG
                     TTNVLYRREDGDLGLLEVRQ"
BASE COUNT         2779 a         1626 c         1795 g         2443 t
ORIGIN      
        1 ttgatagtat agacaatatt tagttttata gccctttagt ttctctttga ttacttcatc
       61 aacttgcttt gaactaaaag taaactaaaa ctatatatca gtcagtccta tatttcctac
      121 tttggatgga gttcttttac ttattttttg ttacaatagt atagaaagga tggagaagat
      181 gcggaaagtt caattttttc tactaataga aagtatgatt tttacgatgg cagcctttga
      241 cgtggtagcc aatgaggcca gtcggaccct gctacttttc tctgccttat tactcgtcat
      301 ttggtacttc ctaggaagaa aagtcaacag tgttttactg gtcagctcct tatctctatt
      361 attttcggtc tttgttttaa atcccttctt cattattggg attatgctac tagtcgtgta
      421 catgctgatt aatttctttt cacgttatga aaagagaaac caatataccc acattgtttt
      481 tagtgattat tctctacagg ttcaaaaaga gaaaaataga tggtttggca accatgacca
      541 ctcacaagat aggtttggtt ttgaagatat taacattgta cgcttgtttg gcaatgatgt
      601 agttgatttg gataagactg tattagttgg cagagataat attgttgtaa ttcgtaaaac
      661 gtttggacgg acaaaaatta ttgttccaat tgatgttgag gttgcacttt cagcaactag
      721 tatctatgga cgagtaagtt tcctgggtga atcatactgg gatttgcgga atgaaagtat
      781 agcggtcaat agtcctgatt atcaagaatc acacaaacgt gtaaaagtcg ttaccaacaa
      841 tatactggga gatgtggagg tggttcgcgt atgagaaaac gtacctacct actcctcgcc
      901 tggtttgcct gtcttattgt ttttgtggtg attgcttcca ccctcccact tttaaattat
      961 tcattgctag atgttacgct ctggatttca acggagcagc tcgtgtttac tctcattcta
     1021 ctagttattg ttttgaccct ttttctagct gtaatggtac aaactgtcag cctagcctcc
     1081 actcaggtta tgcggacgaa gttacaagct atcttgaaga ataaaagtat tcgaacagat
     1141 accgaaagtg atcagctctt gctccagttg tctgataagg tcagaaacct cacgcgtcag
     1201 gtgcaactgg ttgacaatca agatttagtc aagaaagaag agattgttga gggagaacgg
     1261 aaacggattg ccagggattt gcatgatacg gttagtcaag agttatttgc aacgagcatg
     1321 attttgtcag gattatcgtc caatctatcc actcttccgc aggaaacttt gcaggaacag
     1381 ctgatgctcg tgaaagatat gattgagtct gcccaaagag acctacgcat cctattatta
     1441 catctacgcc caagtgaact tgaaagtaaa accttggttg aaggatttga gctgattttg
     1501 cgtgaagtta gcgacaaaag taatattatc gttcatttcc aacatgaagt agaggagtta
     1561 ccgaaactaa ttgaagaaca tctcttccgc attgcgcaag aaattatcag taataccttg
     1621 cgacatgcca aagccaagca tttggatgtt tacctcttgc agaaggaaac agaacttcag
     1681 ttgaaaatga cagacgatgg gatcggcttc caacaaggtg cagatgatga attaagctac
     1741 ggtcttcaaa acatacgtga gcgggttgaa gacatggctg gaacgataaa aattcgcaca
     1801 gctccaaata agggagtggc gattgatatt cgtatcccac tattgaaagg aaaagaagat
     1861 gaatacgatt cgagtgatgc tggttgacga ccatgagatg gttcgtctag gattgaaaag
     1921 ttacttaaat ttacagccag atgttgaagt agttgcagaa gctagtgatg gcgaggaagg
     1981 tttggctaaa gcattagagg ttaaacccga tgttatagtg atggacttgg ttatgcccaa
     2041 gatgactggc gtagaagcaa ccctggcctt gctgaaggaa tggccgcaag cgcagattgt
     2101 catcctgacc tcctacctag ataatgaaaa aatctatcct gtgctggaag caggagctcg
     2161 tggttatatg ttgaaaacgt caagtgctga cgaaatctta gcagccatcc gcaaggtagc
     2221 tcttggagaa tatgctattg agacagaagt agagaaaaaa gtagagcacc ataaacgcca
     2281 cccagattta catgatgact tgacagctcg tgaacgcgaa atcttgacgc tgttagccaa
     2341 gggatatgat aatcaacgaa ttgcagatga gtccttcata tccttaaaaa ctgttaagac
     2401 ccatgtttcc aatatcttat ccaaactagc tgttagcgat cgtactcaag cagttgttta
     2461 tgctttccag catggtttgg tggcgcaaga ggaccaatag tggtataatg aaaattagtt
     2521 aattttcaac caaaggatag tggaattata tggatgcaaa actcagatat aaggcaaaaa
     2581 aaataaaaat agtctttttt gacattgacg acacgctacg tgtaaagaat acaggctaca
     2641 ttcctgaatc cattcagcag gttttcaact cactgaaaga aaagggaatt ttgacaggaa
     2701 ttgcgtcagg acgaacgcct tatggtttgg tgccagaaat caaggcctta aagccagact
     2761 ttttcgctat gattaacggc tcctacgtag aagatgccaa aggtcaggta gtgtaccatc
     2821 agccgatgcc ccaaaattta gtagaatctg tattaaattg ggctaaagaa attggaatcg
     2881 aatatggtat gcttggtagt caaaaaggga cactttctgc acgaactgac cgcattagtc
     2941 aagtaattga cttgatttat gaaggtttgg aaacaaaccc aactttttat aaagaaaatg
     3001 atatctatca attgttaact ttcgagaaag atggtcacga agtagaactt ccagaagagt
     3061 tgcaagcgga attgcgtagt gttcgttggg atgctatttc atcggacatt gtgctaaaag
     3121 gctcttccaa agcaactggt gttgctaagg ttgttgaaaa actaggcctg aaacctgaaa
     3181 atgtcctagt gttcggagat ggactcaacg atattgagtt attcgattat gcaggaatta
     3241 gtatcgctat ggggcattcg catccagaac tgcaaaagca tgcagattat atcacaaaaa
     3301 aagtagaaga agatggcatt tttgatgcct tggagaaatt aggtatggta gaaaaagaaa
     3361 aatatttccc gcaattagat ttggaaaatg ttacaggacc agttgcgcat atcaagacta
     3421 accatggtaa gttaacagta aaactctttc ctgaaattgc acccaaaact gtagcaaatt
     3481 tcgtagctct ttctaaagat ggctattatg acggaattat cttccatcgt attatcaaag
     3541 actttatgat tcaaggtggt gatccaaccg gaacaggtat gggtggtgaa tctatttatg
     3601 gtactgcgtt tgaagatgaa ttttcaatgg aagcttttaa tctcagagga gctttgtcaa
     3661 tggccaatgc aggaccaaat acaaatggaa gccaattctt tatcgttcaa aaccaaaact
     3721 tcccatacaa tgcgaaagaa ttagaacgag gcggttggcc taaagaagtt gcagaagcct
     3781 atgtcaaaaa tggcgggaca ccgcatctag atcaacgcca cacagtgttt ggtcatctag
     3841 ttgatgaaga atccttcgtc gtcttggatg ctatcgcagc ggttgcaaca gattcagcag
     3901 atcgtccaca tgaagatgtt gtaattgaga ccatcgaaat agaggattaa gatgaaaatc
     3961 ggagataaac tcaaggggac ggtaacgggc attcagccgt atggagcctt tgtacaatta
     4021 gagaatggga cgacgggcct agtccatatc tcggaaatca aaacaggttt tgttgataat
     4081 atttatgatc atttaaaatt ggggcaagag gttttggtac aggtagtcga ctttgatgaa
     4141 tatactgaaa aggctagttt atcaatccgg accttggaag aagaacaaca aaaaattccg
     4201 cgtcatcatc gttttacaaa tgaacggaat aaaattggtt tttccccttt agcaaaacaa
     4261 cttccgaaat ggattgagga agctaaaggc tatctcaaag aacacaaaga aaagaaggta
     4321 taggatgcat tcctaacctt ctttcttttt aatcattgaa ctcataaaga gctgttgaca
     4381 agtaacgctc accgttatca ggcaagattg ccaacacttt ttttccagtt cccaactcct
     4441 tagcgacttc gatagcagcg tgaattgctg cacctgaaga aataccaact aagaatcctt
     4501 cttttccacc gatagcacgc cctgtagcta aggcatcatc ggatttgacg cggataatgc
     4561 caacataggc gctagtgtcc aaagtatctg gaataaaacc tgccgaaata ccttgaatct
     4621 tgtgtggacc aggtgcttca ccagataaga cagctgattc atcagcttcg acagcataga
     4681 tagcaatatc tggatttgct gtcttcaaaa catgcgaaac acctgaaacg gtaccaccag
     4741 taccaacgcc agatacaaaa gcatctaaac cagttgttcc aaagtcttcc aaaatttcct
     4801 gtcctgttgt atcttcgtga acttttggat tggatggatt agcaaactgg aaaggaaccc
     4861 agccattttt ttcttcagca atctcttttg ctttggcgat agcccccctc atcccttcgc
     4921 taccaggagt caagacaagt tcagctccat aagcttggat aatcttacga cgctcaacac
     4981 tcatggtttc aggcatgacg ataatcacct tataaccttt tgctgctcca acccaagcaa
     5041 gaccgatacc agtgttacca cttgttggct caacaatagt atctccaggt ttgattgtac
     5101 cagccttctc agcatcttca atcatagcca aggcgatccg gtcttttaca gaagatcctg
     5161 ggttaaaggc ctctaatttc acatagacct ccgctgcccc ctctggaacg atattattga
     5221 gtttaataac aggtgttttt ccaactaatt gagtaatgtt ttgataaata gccatatggc
     5281 acctccaaat aatgttatta tacattatat agtagaaagt caaaaaagga taatataaaa
     5341 aaactatctc gccgatagct ttttttaata gacaggtacc tcaacgattc gagagttagc
     5401 tttttccgcg gatacctttc cgtggtaaaa gtcagtgaga cttgctaagg tttgttcaag
     5461 gaattcttta tctacaaaaa tcatggttga aacttcagta gtaaactggg tatcaaattc
     5521 ttccagacct tgctccgttc gccaattggc aaactcttgg tattgggcat aggacatgct
     5581 aatggaaatc ccttcctgct ccttgacttc cacaaccccg atttccttga ctgcattagc
     5641 cacggctcca gcgtaagcac gaataagtcc gcctgccccg agtttgatac ctccaaaata
     5701 gcgggtaacc accgttgcga cattggtcag ttcgtgattt tctaaaaccg tcagcattgg
     5761 cacaccagca gtaccagacg gctccccatc atctgaggaa cgcttgattt ccatattttc
     5821 tccaaggaca aaagcagagc agttatgagt agccttgtaa tgttctttct tgattttgtt
     5881 gataaagtcg cgagcttcct cctcgctggt cactcgtttc ataaagcaga taaatcgtga
     5941 ctttttaatt tcttcctcaa caataccatc ttctctaatt gttttaaatt ctttcataac
     6001 caaattgtac taattttttt aaaaactgac aagaaattcc gaataaataa gcgatgaaag
     6061 aattagaaaa ttattatgga agattattta ccaaatacca attgacagca aaagaaagag
     6121 aaatagcaga aaaagtgcca agtattacaa aaaagaataa ctgctttcgc tgtggaacaa
     6181 cttttgaaga agaaaacaaa ttgccaaacg atgcttatta ctgtcgagcc tgcttgcttc
     6241 taggcagagt acggtcagac gaaaaactct atcattttcc tcagaaagat tttccaatca
     6301 ctaagtgttt aaagtggaaa ggtcaactaa ctgattggca acaaagaatt tcagatggac
     6361 tagttgcaaa cgtgaaaaat aatcgtgcga cattggttca tgcagtaaca ggagcaggta
     6421 agacagaaat gatctaccac accgttgcct cagtgattga taaaggcgga gcggtttgcc
     6481 tagccagtcc tcgaattgat gtttgtatcg aactctataa acgtctgcaa aatgactttt
     6541 cagttccaat tagtttactg catggagagt ctgaacccta tttccgaacc ccattagttg
     6601 tagcaaccac acatcagtta ttaaaatttt atcaggcctt tgatttggtt ttgattgatg
     6661 aagtagacgc ctttccctat gcagataatc ccatgctcta tcaagcagca gataatgcgg
     6721 tcaaggaaga cggagttcaa gtttttctga cggcgacttc aacagatgaa ttggataaaa
     6781 aagtcagaac gggcaaatta agccgtctta gtttgccaag gcgctttcat ggcaatccgc
     6841 ttgttgtccc gcaaaaagtc tggtttagta aattcgatga taccctaaag aaaaatagac
     6901 tagttccaaa gttgaaaaaa gcgattgaag aacagagaac gtcgggcttt cccttactca
     6961 tttttgtccc agaaatctcc aaaggtcaag aatttaccaa gataatgaaa aaaacattcc
     7021 cagaagaaac aattggcttt gtatccagtc aaacagaaaa tcgccttgaa atagttgaag
     7081 ggtttcgcaa gagagaaatc acagtcttaa tctcgactac tattcttgaa cgtggggtga
     7141 ccttcccatg tgtagacgtc tttgttgttc aagccaatca ttacctctac acctcatcca
     7201 gtctagtgca gattgcaggt cgggttggta ggagtatgga acgtccgact ggtttactcc
     7261 agttttatca tgagggaagt acaggagcca ttgaaaaggc aatcgctgaa attaaacaga
     7321 tgaacaagga ggctggttat gtctaattgt ctattgtgcg cccaagctat gaaaaataaa
     7381 acaagatttt cagatctcat cttctttagt aaagaaaaat cgggtatatg tgaagaatgt
     7441 ttttcgactt ttgaggaaat agcagagcaa cactgtccac attgttataa aaatggagaa
     7501 tcggaaagtt gcaaggattg tcagtactgg cagaatcaag ggaaaccagt tgttcataca
     7561 gctttgtacc gatataatca agcgatggca cattatttta gtcgctacaa atttcaagga
     7621 gactatgttt taagaaatat ttttgctaaa aagcttagaa tagcgttaag ccaatttcct
     7681 gactacacaa ttgttcccat accaattagt caaaaacgac tattagaacg cggttttaat
     7741 caagtggaag gacttttgag tgctacaaat attccctatc agtcccttct tggaaagtat
     7801 gaaagccaaa aacaatcatc taaaaatcgt gcagagagac tagaagcaaa acagatgttc
     7861 tatctattag atgaaaaaga agtgccagaa aaaatattat tattcgacga tatatataca
     7921 acaggagcca caatccaact tgctgtagaa cttttcatga aaattggtag gaaagaaatc
     7981 aaaacatttt cactaacacg atgagaaaac ggttgcaata ttcttataat gtggtataat
     8041 aatagtgaag aaaggcgaaa gccaagaaag aggtactaaa tatgattaaa ttcagtattc
     8101 gtggagaaaa ccttgaagtt acagatgcac ttcgcaccta tgtagaagag aaagtggcta
     8161 agattgagaa atatttcaat gaagaacaag agttgaatgc taaagtaaat ctaaaagttt
     8221 accgtgacaa gcgcgcaaaa gtagaagtga caattccagt tggagcagtt acacttcgcg
     8281 cagaagatat ttcacaagaa atgtatggct ctatcgatct tgtagtagat aagattgaac
     8341 gtcaaattcg tcgtaacaaa accaagattg aacgaaaaca tcgtcaaaaa gtggcaactg
     8401 gtcaagtctt tacagatgaa cttgttgagc aaacaggcga ggaagtaaaa gtggttcgta
     8461 ctaagcaagt agacttgaaa ccaatggata tggaagaagc agtcctccaa ttggagttgc
     8521 tcggacatga tttctttatc tatacagatg ctaatgacgg cacaacaaat gtattgtata
     8581 gacgcgaaga tggagatttg ggtcttctag aggtacgtca ataaagataa taaaacagtt
     8641 gca
//
LOCUS       DASFRC010000089         8618 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.089, whole genome shotgun sequence.
ACCESSION   DASFRC010000089 DASFRC010000000
VERSION     DASFRC010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8618)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8618)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8618
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.089"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(104..556)
                     /gene="nrdI"
                     /locus_tag="U1087_001434"
     CDS             complement(104..556)
                     /gene="nrdI"
                     /locus_tag="U1087_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class Ib ribonucleoside-diphosphate reductase
                     assembly flavoprotein NrdI"
                     /protein_id="HEM4755905.1"
                     /translation="MKKKIYLVYISLSGNTESFVKRLKSFFQFQTDWEIELVHVKDLV
                     KQDIPFYQLDAPFVAFLPTYLEGGNGVDNGDVEILTNPLGDFIALGTNAELCLGVVGS
                     GNRNFNNQYCLTAKQYAERFNFPVIDTFELRGMQNDIERIGRKIMELM"
     gene            complement(633..1565)
                     /locus_tag="U1087_001435"
     CDS             complement(633..1565)
                     /locus_tag="U1087_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEM4755906.1"
                     /translation="MNKFFRKQRVRFLRKARKNKFWSVILGISREKYAERISGSIIYG
                     LLSSIAVNFFFRPGNVYSSGVTGLAQIVSALAASYAGWNVPIAVVYYGLNIPLLILAW
                     YKIGYKFTIFTFITVSFSSFFIQFMPPVTLTTDPLVNAIFGGLMLGTGIGFALRNNVS
                     SGGTDIVSIIIRKKTGRQVGSISLIVNIMIMLIAGMTFGWQYALYSMVALFISSRMTD
                     AIFVKQKRMQAMIITNHPERVIKKIHKKLNRGVTIINGAEGAYNHEQKTILITIITRA
                     EFNDFKHIMKKADPKAFVSVADNVNIIGRFVESD"
     gene            complement(1558..3309)
                     /gene="aspS"
                     /locus_tag="U1087_001436"
     CDS             complement(1558..3309)
                     /gene="aspS"
                     /locus_tag="U1087_001436"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HEM4755907.1"
                     /translation="MKRSMYAGRVRKEHVGQEITLKGWVGRRRDLGGLIFIDLRDREG
                     IMQLVINPESVEAEVMAKAESLRSEFVIEVTGTVVEREQANDNIPTGAVELQVTSLTV
                     LNTAKTTPFEIKDGIEASDDTRLRYRYLDLRRPEMLNNFKLRAAVTHSIRNYLDDLEF
                     IDVETPMLTKSTPEGARDYLVPSRVSKGHFYALPQSPQITKQLLMNAGFDRYYQIVKC
                     FRDEDLRGDRQPEFTQVDLETSFLNEVEIQDIVEGLIAKVLKDTKGIDVTLPFPRMAY
                     DHAMNFYGSDKPDTRFEMLLQDLTELVKEVDFKVFSEAPVVKAIVVKGAADSYSRKDI
                     DKLTDYAKQFGAKGLAWVKVDKGELAGPVAKFLTGITEKLTASLQLEDKDLVLFVADE
                     LEVANNTLGALRNRLAKEQGLIDESKFNFLWIVDWPMFEWSEEEGRYMSAHHPFTLPT
                     EETAHHLDGDLAQVRAVAYDIVLNGYELGGGSLRINQKDMQEQMFKALGFSAEDAHEQ
                     FGFLLEAMDYGFPPHGGLAIGLDRFVMLLAGEDNIREVIAFPKNNKASDPMTQAPSTV
                     ASAQLEELALDITLENE"
     gene            complement(3405..3857)
                     /locus_tag="U1087_001437"
     CDS             complement(3405..3857)
                     /locus_tag="U1087_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM4755908.1"
                     /translation="MKWEIKTFEQLSLHELYTILTLRTDVFVVEQACPYPEVDGKDPN
                     CLHLLGTDEGELVAYLRILPAGISYDEVSIGRVVIKPSHRGKGLGRPMMEQAIHYITN
                     EWKESQIKIGAQAYLEKFYQSLSFKPVSEVYLEDDIPHLDMLYIKPVN"
     gene            complement(3867..4778)
                     /locus_tag="U1087_001438"
     CDS             complement(3867..4778)
                     /locus_tag="U1087_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEM4755909.1"
                     /translation="MQRLGQTGLEVSRIALGCMRMASLSEKETAKVLETVVEQRINFF
                     DHADIYGGGESEIRFAQGAKLAGLKREDLLLQSKCGIRKGYFDFSKEYILESVDGILK
                     RLDTEYLDVLALHRPDALMEAEEVAEAFYLLKKAGKVHHFGVSNQNIYQMELLQSYLD
                     QPLAVNQLQLSPAHTPLIDAGLHVNMKDAAATMRDGGLIDYCQLKKITIQAWSPFLID
                     LQRGIFANHPDYALLNQTIGEIAERYNVSHETIVVAWILRHPAKIQTIVGSMNPERLT
                     KIAQASQITLTRPEWYEIYRSAGNILP"
     gene            complement(4848..5863)
                     /locus_tag="U1087_001439"
                     /pseudo
     CDS             complement(4848..5863)
                     /locus_tag="U1087_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018377584.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
     gene            complement(5908..8307)
                     /locus_tag="U1087_001440"
     CDS             complement(5908..8307)
                     /locus_tag="U1087_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HEM4755910.1"
                     /translation="MKYQEIINRLTLEEKAALMSGKSVWETKDYPEKGIPSIFLSDGP
                     HGIRKQEGEGDHLGLNASVPATCFPTAATLANSWDVDLVERVGQGLGAEANSLGVNVI
                     LGPGLNIKRSPLCGRNFEYYSEDPYQAGKLAAAMIRGMQSQGVAATPKHLAVNSQELR
                     RMASDSIVDERTLRELYLTGFEIAVREGNPKVIMSAYNKINGVYANEDKRLLRDILRD
                     EWGFTGFVVSDWGGSNDHVLGVENGSHLEMPGTKKVGQKEIIDAVQSGRLSEQVLNER
                     VDELIDVVLELAHAEKRSVDYSEQHELARQAATESIVLLKNKNQILPLSSETKIALIG
                     EFAQNPRYQGAGSSLINTRQLDKTVDCIADYPLNVIGYEQGYQRVDKENRVLVDRAVN
                     LANQAELVLYYMGLDEMSESEGLDRHHISLPKNQLSLLNALVGTGKKIVVVLSAGSVV
                     DMNWDVDVDAVLHGYLSGEAGARAILDTLTGRVNPSGKLSETYPINLADVPSSDDYPA
                     EGDFSLYKEALYVGYRYFTSLDKTVKYPFGYGLSYTDFSYSQLDVTELGVRVTITNTG
                     LVDGAEIVQLYVGKEVRQIYRPAKELKGFKKVYVKAGESKQIFIPFEDYTFRYFNKET
                     GQFEVEAGNYLLYVGASSQDIRLVGEITREGTVDQFPASEQIPTYLTAQVQAVSEQDF
                     AQLLGRPVPEETWKIGQELSLNDPVLKLQFAKSGLARGVHKLLAGLLKKAEQKGTPDL
                     NLLFLYNMPFRAMAKMTGDMLDLPMVEGILTIVNGNFFKGLGQLWRAYQAKRKYQKQL
                     S"
BASE COUNT         2486 a         2038 c         1592 g         2502 t
ORIGIN      
        1 tcctaaatat ttttcataat ctccttaaaa ctcatcggtc acgctggtga gtttttttgt
       61 gtgaccaaaa aaacaaccca gcataaagct gagttgaggc tctttacatc aattccatta
      121 tcttccgacc aatgcgttca atgtcattct gcatccctct gagttcaaag gtgtctataa
      181 caggaaaatt aaatcgctca gcatattgct tagcagtcag acaatattgg ttgttaaaat
      241 tacggttgcc tgagccaacg acacccagac agagctctgc attggtcccc aaagcgataa
      301 aatctccgag aggattggtc agaatttcca catctccgtt gtccactcca tttccacctt
      361 ctaagtaggt tggtaaaaag gcgacaaagg gtgcatctag ctgatagaaa ggaatatcct
      421 gcttgaccaa atctttaaca tggaccagct caatctccca gtcagtttga aattggaaaa
      481 aggactttag acgtttcaca aaactctctg tattgccact caaactgatg taaaccaaat
      541 atattttctt cttcatacat ttcctcttta taataaaaac actacatgta gactgtaaat
      601 actattttac tcctacatgt agtgtttgtc aatcagtcac tttccacaaa ccgaccaata
      661 atattgacgt tgtcagctac cgatacaaag gctttggggt ctgccttttt cataatatgc
      721 ttgaaatcat tgaactctgc acgagtgatg atggtaatga gaatcgtctt ttgctcatgg
      781 ttataagcac cctcagcacc gttgataatg gtcacaccgc gattgagctt cttatggatt
      841 ttcttaatga ctcgttcagg atgattggta ataatcatgg cctgcatccg tttttgtttc
      901 acgaaaatcg catctgtcat gcggctggag ataaacagcg caaccattga atacagggca
      961 tattgccagc caaaggtcat ccctgcaatc aacataatca taatgttgac aatcaaggaa
     1021 atggagccaa cttgacgtcc cgtcttcttg cgaataataa tagagacaat atcagtacca
     1081 ccactggata cattgttcct aagcgcaaat ccaattccag ttcccagcat gagaccacca
     1141 aaaatagcat ttactaacgg atccgtcgtc agggtaactg gcggcataaa ttggataaag
     1201 aaagaactga aggataccgt aataaaggta aagatagtaa atttataacc aattttatac
     1261 caagctaaga taagcaaggg aatgttcagg ccgtagtaga ccaccgcaat cggtacattc
     1321 caaccagcgt aagaagctgc cagagcagaa acaatctgtg caagaccagt aactccagac
     1381 gaatagacat tccctggtcg aaagaaaaaa ttgactgcaa tactagatag gagtccataa
     1441 ataatggacc ccgatatccg ttcagcatat ttttcccgag aaattcccaa aatgaccgac
     1501 caaaacttat tctttctggc ctttcttaaa aagcgtacac gctgttttct gaaaaattta
     1561 ttcattttca agtgtaatgt ctaaagccaa ttcctctaat tgagctgatg caaccgtact
     1621 tggtgcctgt gtcatcggat cagatgcctt gttattcttc ggaaaggcga taacttcacg
     1681 aatgttatcc tcaccagcca ataacatgac aaagcggtcc aacccgatag ccaatccacc
     1741 gtgtggtggg aaaccgtagt ccatagcttc tagcaagaaa ccaaactgct catgggcatc
     1801 ttcagctgag aaaccaagag ccttgaacat ctgttcttgc atgtcttttt ggttgatacg
     1861 aaggctaccg ccacccaatt cataaccatt caaaacaata tcgtaggcaa ctgcacgcac
     1921 ctgcgccaaa tcaccatcca aatgatgagc tgtttcttcc gtcggcaagg tgaatgggtg
     1981 atgggcactc atatagcgac cttcctcttc agaccactca aacattggcc aatccacaat
     2041 ccagaggaag ttgaacttgc tttcatcaat caagccttgc tcttttgcca agcggttacg
     2101 caaggctccc agggtattgt tggctacttc caattcatct gctacaaaga gaaccaaatc
     2161 cttgtcttcc aactgtaaac ttgctgtcaa tttttctgta atacccgtca agaacttagc
     2221 aactgggccc gctaattctc ccttgtctac tttaacccaa gcaagtccct tagcaccaaa
     2281 ttgttttgcg tagtctgtta atttatcaat gtctttacgt gagtagctat ccgccgcacc
     2341 cttgaccaca atggctttga caactggtgc ttctgagaag accttgaagt caacttcctt
     2401 gacaagttct gtcaagtctt gcaaaagcat ctcaaaacga gtatctggtt tatctgaacc
     2461 gtagaagttc atcgcatggt cataggccat acgtgggaat ggcaaggtca catcaattcc
     2521 tttggtatct ttcaagacct tagcaatcaa gccttctacg atgtcttgga tttcaacctc
     2581 attcaagaat gaggtttcca agtcaacctg tgtaaactca ggttgacgat ccccacgcaa
     2641 atcttcatca cggaaacact taacgatttg gtagtaacgg tcaaaaccag cgttcattaa
     2701 aagctgctta gtaatctgtg gactttgtgg caaagcatag aaatgacctt tggacacacg
     2761 agatggtacc aagtagtcgc gcgcaccttc tggtgttgac ttggtcaaca ttggtgtttc
     2821 cacatcgata aattccaaat cgtccaagta gttgcgaatg ctgtgggtta cagccgcacg
     2881 taatttgaag ttgttgagca tttctggacg gcgaagatcc aaataacggt aacgaagacg
     2941 ggtatcatca ctggcttcaa tgccgtcctt gatttcaaac ggagttgtct tagccgtgtt
     3001 caacactgtc aagctggtta cttgcagttc aacagctcct gtcgggatat tgtcgttagc
     3061 ttgctcacgc tccacaaccg ttcctgttac ttcgataaca aactcggaac gaagactctc
     3121 cgcttttgcc atcacttcag cttcaactga ctcagggtta atcaccaatt gcataatgcc
     3181 ttcacggtca cgcaagtcaa tgaaaatcag gccacccaag tcacgacggc ggccaaccca
     3241 acctttcaaa gtaatttcct gtccgacatg ctccttacga acacgtccag cgtacataga
     3301 acgtttcatt ttcttcctct tttactgatt ttatacctat tcattctacc ataaaatagc
     3361 tgatttttgg gagaaattgc cgagaaaaaa tcgaaaaacc agccctagtt gactggtttg
     3421 atgtatagca tatccaaatg cggaatatca tcctccaaat atacttcaga aactggctta
     3481 aagctaagtg attgatagaa tttttctaaa taggcttggg caccgatttt aatctgactt
     3541 tctttccatt catttgtaat gtaatggata gcttgctcca tcattggccg acccaatcct
     3601 ttaccacgat ggcttggctt gatgaccaca cgaccgatgg aaacttcatc ataacttata
     3661 ccagccggca atattctcaa ataagccact aactctcctt catcagttcc caaaagatga
     3721 agacagtttg gatcctttcc atcgacttca ggatagggac aagcttgttc tacaacaaag
     3781 acatcggtcc gaagtgtcaa gatagtgtaa agttcatgta aactaagttg ttcaaatgtt
     3841 tttatttccc acttcataca ttcctcctag ggcagaatgt tccctgcact tctgtaaatc
     3901 tcataccatt ctggtctcgt taaggtaatc tggctcgctt gagcaatctt tgtcaagcgt
     3961 tctgggttca tagaacccac aatcgtttga atctttgctg gatgacgcaa aatccaagct
     4021 acgacaattg tttcatgtga aacattgtat cgctctgcta tttccccaat ggtctgattt
     4081 aaaagagcat agtcaggatg gttggcaaaa atacctcgtt gcaaatcaat caagaaagga
     4141 gaccaggctt ggatagtgat ttttttaagc tggcaataat caatcagccc accatcacgc
     4201 atagtcgcag cagcatcttt catattgaca tgtagtccag catcaatcaa aggcgtgtga
     4261 gcaggagata gctgtaattg attaactgca agcggttgat cgagatagga ttgtagtaac
     4321 tccatttggt aaatattttg gttgctgacg ccaaaatgat gaaccttccc tgcttttttc
     4381 aagagataga aggcttctgc cacttcctct gcttccatta gagcatccgg acggtgtaag
     4441 gcgagaacgt ctaaatattc cgtatccaag cgcttcaaaa tcccatccac agattccaaa
     4501 atatactctt ttgagaaatc aaaataacct ttacgaatgc cacattttga ttggagaagc
     4561 aggtcctcac gtttcaatcc cgccaatttt gccccctgag caaaacggat ttctgattca
     4621 ccaccaccat aaatatccgc atgatcaaaa aagttgattc tttgctcaac cacggtttcc
     4681 aataccttgg ctgtttcctt ctcgctcaaa cttgccattc gcatacagcc taaagcaatt
     4741 cgtgaaactt ctagacctgt ttgtcctaat ctttgcattt atcttctcct ttgtaaacgc
     4801 ttttcatatt ccttattata acagaaaaac tcagccgaaa ctgagtttta gttaaaacca
     4861 taaattcttt tcgcgatttt atagacggca ttggaaattt ttcgacctgg gtaaccgtaa
     4921 aggttggtta attgcccgag taaccctttt cgaacgattt taaatagagc tggattatta
     4981 tcccgaatat agtgccagag ttcctgcttt ttcatcatat gttcagctgt tccagcacga
     5041 ttgagaagag cacaggagat aatggtcgta atctccacat gattgagcaa ataacttcgt
     5101 aaatcaggat tgtcaatcgc ctccaagtct aaattatcta ccaaaattcg attgactttt
     5161 aactgctggt caatgcgctt aatcatgacg gattcattga cagactggtc atttcgccca
     5221 ataaagtaac gataaaaatc tactggcaga tagaacatag ttttcacagc ctgcaaagga
     5281 gtaaatacga aaatattatc cacatagaag gtatgctctg gcagaacgag accaacctca
     5341 cgcaataaat ctgtcctgta aatcaaggaa tgcatcatca tgtattgccc cttggaaaag
     5401 gcatccacat cttcccagcc aaaaatccga ttttctggta aaacatcctg ataagacatg
     5461 gattttttac gagattgtcc ctctttttcg taaacaaagt tggagataaa ggcatcaact
     5521 ggcgtatttt catcttccaa agcctgcaaa ctctctagga tcttcaaata ggccctggta
     5581 tcgacccagt catctgaatc tacaacttta aagtacttcc ccttggcctc acgtatccct
     5641 gtattaacag ctccgccatg gcccttattg tcctgataaa tggcacgtac gtttgaaaat
     5701 tgatcctcta gagcccctct gcgatttcct gagtccgatc ggtcgacccg tcgttaataa
     5761 tcagaatttc aaccttgtca ccgcccatta caagggaatg aacacagtaa tgaaggtagg
     5821 cttccgaatt atagctcggt atggcaatgc ttagtaaggt catctttctc tccatttgac
     5881 acaatttgtt actattttat cacattttca ggaaagttgc ttttgatatt ttctttttgc
     5941 ttgataggct ctccatagtt ggcctaagcc cttgaaaaaa tttccattga caatggttag
     6001 aatcccttcc accatcggta aatcgagcat gtctcctgtc atctttgcca ttgccctaaa
     6061 tggcatatta taaaggaaca gcaggttcaa gtcaggagtc cctttctgct ctgctttttt
     6121 cagtaagcca gccaacagtt tatgcacgcc acgtgccaac ccactcttcg caaattggag
     6181 tttcaaaact ggatcgttca ggctcagttc ttgaccaatt ttccaggttt cttctggaac
     6241 tggacgtcca agcaattgtg caaaatcctg ctctgaaaca gcctgcactt gggctgtcag
     6301 ataagtcgga atctgttctg aagcaggaaa ttggtctaca gtgccttctc gagtaatctc
     6361 gccaactaag cgaatatcct gactacttgc acctacatac aagagataat ttccagcctc
     6421 tacttcaaat tggcctgtct ctttattaaa ataacgaaac gtatagtcct caaaaggaat
     6481 aaaaatctgt ttggactcgc ctgcttttac atatactttt ttaaagcctt ttaactcctt
     6541 tgcagggcgg taaatctgac gaacttcttt gcctacgtac aattggacaa tttcagcacc
     6601 atcaaccaga ccagtatttg taatagtgac tctgactcct aattcggtca catccaattg
     6661 actgtaagaa aagtctgtgt aggacaatcc ataaccaaag ggatacttga cagtcttgtc
     6721 aaggcttgta aagtaacggt agcctacata gagagcttcc ttatagaggg aaaaatcgcc
     6781 ttccgctgga tagtcatccg aagatggaac atctgcaaga ttaataggat aggtttcgct
     6841 tagttttcct gatgggttga cacgtcctgt caaggtatct aaaatggctc tggcaccagc
     6901 ttctcctgat agatagccgt gaagaaccgc atctacatcc acatcccaat tcatatccac
     6961 aactgagcct gctgatagga caacaacgat ttttttacct gtccctacca aggcattcag
     7021 taaggataac tggtttttag ggagacttat atgatgacga tccaagccct cactttcact
     7081 catttcatct agccccatat agtaaagaac aagttccgct tggtttgcaa gattgacagc
     7141 cctgtcaact aacaccctgt tttctttatc tacacgttga tagccttgtt cgtaaccaat
     7201 gacatttaat ggataatctg cgatgcaatc cactgtttta tctaattgtc ttgtattgat
     7261 taaagaagaa cctgctccct gatagcgagg attttgggca aattctccga tgagagctat
     7321 ttttgtctca ctagataagg gcaagatctg attcttattt tttaatagca caatgctctc
     7381 agtggcagcc tgacgggcca attcatgttg ttcagaataa tctacagatc gtttttcagc
     7441 atgagccaac tctaaaacta catcaatcag ctcatccacg cgctcattca atacctgctc
     7501 ggatagacga ccagactgaa cagcgtcaat gatttccttt tgaccgactt ttttagtacc
     7561 tggcatttcc aaatgactac cattttcaac accgaggaca tggtcattag agccacccca
     7621 atccgatacg acaaaacctg taaagcccca ttcatcacgc agaatgtcac gcaagaggcg
     7681 cttgtcttca ttagcataga cgccgtttat tttgttatag gcagacatga ttacctttgg
     7741 atttccttca cgcacagcaa tctcaaatcc tgtcagatag agctctctca gcgtgcgctc
     7801 atctacaatg gagtctgaag ccatacggcg caattcctga ctgtttacag ctaaatgctt
     7861 tggcgttgcc gcaacacctt gcgactgcat tcctcggatc attgcggccg ccagttttcc
     7921 cgcttgatat ggatcctctg aataatactc aaagtttcga ccacataagg gactgcgctt
     7981 gatattaagc cccggcccca aaatgacatt gacacccaag ctatttgctt ctgcgccaag
     8041 accctgtccg acacgttcaa ccaggtccac atcccaagaa tttgccaagg tagcagctgt
     8101 tgggaaacaa gttgcaggga cagaggcatt cagccctaag tgatcacctt caccttcttg
     8161 cttacgaatt ccatgtggtc catcagacaa aaagatagat ggaattcctt tttcagggta
     8221 atcctttgtt tcccaaacag attttcctga catgagagct gctttttctt ccaatgttaa
     8281 acgattaata atctcctgat acttcatcat cttttcctca ttctatttct ttatcactat
     8341 catatcagac taaagggaca attaaaacgc tttcttcata atctgtatga ttttggacat
     8401 aatctgctat aaaaaatctc cccagaaaat actagggaga tcgctcctat tacttcttat
     8461 actcaatgaa aatcaaaatc aggctagctc caacagtctg agaatagact gttggaggtg
     8521 ggagatagga cgaacctagt tcgtttctat atgagcagat agaactctgt cgctttatta
     8581 ttgtcaagcg acaggctgga aacctccact ggagcttt
//
LOCUS       DASFRC010000090         8608 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.090, whole genome shotgun sequence.
ACCESSION   DASFRC010000090 DASFRC010000000
VERSION     DASFRC010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8608)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8608)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8608
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.090"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            128..718
                     /gene="lepB"
                     /locus_tag="U1087_001441"
     CDS             128..718
                     /gene="lepB"
                     /locus_tag="U1087_001441"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEM4755911.1"
                     /translation="MNSSNLKGKELPKTSELKELYQHERYRHTFWRTVKSTVFMLVVV
                     AAFAILIAVLFLPILRIYGDSMKGTLNSGDIVVSVKSNDFESSDVVAFYYNNNILVKR
                     VIAEAGDWVDMDKQGNVYVNNQRLDEPYLANRDYGHTDIEFPYQVPENRIFVMGDNRK
                     ESIDSRNNAIGTVSNEQIVGKLVFRVWPLREMGVID"
     gene            768..5768
                     /locus_tag="U1087_001442"
     CDS             768..5768
                     /locus_tag="U1087_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018164816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="InlB B-repeat-containing protein"
                     /protein_id="HEM4755912.1"
                     /translation="MQNNFKFKRLSLWQKKYRKFVNFVAVVVVFVTTYALILPALTLE
                     SNKASQLSGISSSETTTEIQGNEETPVEVTEAASQMVEESSAIEQTSMTTSVTSTTEL
                     SSEPQTTETTKVDQQVITEATEFIHKGKDYEVIARFDASAKMPKGVELKVKEIEAGTD
                     TYKSRFNKAKATLGARALTFARFFDISFVHDGKEIQPEAPISIQIKTDSNIKLKEETK
                     VEAVHFQSANKAEIVPEVETNEENNQVSEISFDADSFSDYGVVGAEYYKVTFVALDSN
                     GQEQTVSSLVDKKEGAKLETLPEEPFRAGYRFIGWRDKETNKIVTADTLVTRDMIVEA
                     EFASISIYKVTIQYFYNNVTSGQKVTFETEVYELEAEDMPYRITTPVSTEIKSGAESG
                     LVTDAIYYTSRPIIDIQSEDLARLDEEDGNVDHTLTIKVAYIPYNSEYKVHYKLKDLD
                     GTGYTDIETGTYYGIIGSTIRPEVRNYSYANFEKTDSLELTKSSGQEIDVYYTRKEYT
                     LSYNTNGGSYLPPQTGLYNAKVNLTTTIPTREGYTFDGWYDNANLTGSPISGSVTLDK
                     NKTLYAKWKADTVKYTIAYYKEVYNNSTGQTDYAYDSSINATGQVGTIIQASTAPEIS
                     SRPPIGYEKETAYGKNSTSSIVVAADGSSTLKVYYSLIRYTLTFDINRNSTSRFYTYY
                     GQIEKGGSTYTGTQYKIRDVVVGQDILNLWPSGGDEVYQMLRIGNGTPGKDDSMKFRG
                     WTFSDSNSYNVTRRPTLTTDMITTANANHEVVVTGHWESSLKTKRVDYYLQSADNPNV
                     YVLSEHSQSLNGGQNSPLNAKTIMGYQVIPTVPAGYDNHSGPYATLNNGIILYDHYRF
                     YYNRDSFKIDYYYGSTKLKDPENVLFDANINSAIYNYTPSRPAGVDADYTWGGWYTDS
                     NLTEAYTFDKMPSNNLVLYAKWVAPNMTVSFDLNGGEGTAPESQTVEKKKIATVVADP
                     TRAHYDFDGWFTAKEGGERYVWSKPVTENITLYARWKPQPLKYMVKYVDATTNKSLAA
                     DKVIESPALELHQAIKENALAITGYRPDASSKTLDLTYDNNEIVFYYSDRTSKIPYTV
                     RYLLKDGDNDDSNNTVLLPEDHLEADANMIVAKAVAKGVGTGYYPQNNVLSLTLTTNS
                     ANNIITFYYLPYEFATLTVNYLDMDGNPIAGQDPLVEYKKKGDTYILNRKEIQGYTFS
                     TSKDNENNVDKSIYRIRRPDKRTINLYYKKNLTLEGQPREKVYDDEPLKLSGIDDLKS
                     GYSTSLASGDRLTAIDFEGSQTDVGSSNAKPKSAVITTADGKNHTDYYEITYLDSSLT
                     VKKRPVTVEIGSQTIEKIYDGKVSTVDYKVNSISDSLYKESDIHYTGSEIEMTQKDVG
                     TYTFALQNKFVNTNDNFEVTFLAKDGKITINPRKLMLTSATKEKAYDGTELTAQEVSM
                     TTPEGASYDGFVQGEGVDFSDFASLTNPGRRTNSFTYKAKEGTNLSNYEITDEFGMLT
                     ILETLNITKTDENWKSLAGGKFELTKWDGLNWAQVDGVQEFAITSKDGIRIPVGLEAG
                     RYRLQELAAPDGFIVLDSYIYFSIKENFNEDKTSSFYTVALSDEAGNDASPERATLTK
                     VSGDASHRIQVANEQGRALPSTGGDGQKWFILSGLVLIVISYLMHLFVQRNREKRS"
     gene            5869..7305
                     /locus_tag="U1087_001443"
     CDS             5869..7305
                     /locus_tag="U1087_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SpaH/EbpB family LPXTG-anchored major pilin"
                     /protein_id="HEM4755913.1"
                     /translation="MNKLKSLFMTVLAVLAMVLPTPFASAQEVNTNAGGTGKITVRNA
                     SQSQKYTIYKLFDATVTEDGSGISYKVPTGKILPADNPYFAVDSKGNITAKEGATVSS
                     EAFAAWAKNFGTEVTSATANDNSLVFTHLTFGYYFVTSSLGAVLTVDSTTPNATVIDK
                     NTTNPTIPDSNNGGGKKILSNGATTSETTAKIGDTINFQIKFNATNYVTKDRQTKQIV
                     SYAIEDSPTALAIDQNSVNVKVDGVDITAKISKTFDATGKMNLVLTWADAAASNKTIY
                     NSPAEVIITYSAVVTKDAKEGEATNSATIGYNTIDNPTTPPTPVDPDKPTETTKVTTH
                     RFTLKKTNNVGETLTGAEFKLYDAANNGTEIKVVKESDGVYRVAQADEQGVVIEAGEV
                     VIKGLKHSTTYYLEEMKAPNGYNILTERQSIEVKENNTAQANIVNKKGGVLPSTGAIG
                     TTLFYLVGSILLLVALVYTISKRRMNNI"
     gene            7419..8288
                     /locus_tag="U1087_001444"
     CDS             7419..8288
                     /locus_tag="U1087_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class C sortase"
                     /protein_id="HEM4755914.1"
                     /translation="MIKWLKKKGPSFIMPLIFILGIGLLAYPSVSDYWNSFHQSEAIM
                     SYSDTVSDMTADQYKEIIDSARQYNQEKPLNWNVTASDIEAYNQELNFNKDGIMGYIE
                     IPKIDVKLSIFHGTDETVLETSIGHLEGTSLPVGGLGTHSVLSGHRGLPSARLFSDLD
                     KLREGDIFTIHVLNETLTYKVDQIRVVEPSDLSALTIEPQKDLLTLVTCTPYGINTHR
                     LLVRGYRIENVNGSALVTSDAIQIKAIFIAPFIATPILFVILIYIFITTSKTFRSWNR
                     NQVLDDFLVPKKF"
     gene            complement(8402..8608)
                     /locus_tag="U1087_001445"
                     /pseudo
     CDS             complement(8402..8608)
                     /locus_tag="U1087_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000018958.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus and C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="IS982 family transposase"
BASE COUNT         2867 a         1554 c         1803 g         2384 t
ORIGIN      
        1 agaattatga ttagtcaatc tggctccata gcggaagctt caatgaaact gactaatatt
       61 tttgaagaag cgcaaaaagc tgcggatcta tatctctata atgtgaaaaa caaaattggt
      121 gatgttcatg aatagttcaa atctcaaggg aaaggaactt ccaaaaactt cagaattaaa
      181 agagctatat cagcatgaaa gatatagaca tacattttgg aggacagtga aaagtacagt
      241 gtttatgttg gtagtagttg cagcatttgc aatactaatc gctgtattat ttttgcctat
      301 tttgagaata tacggagatt caatgaaagg aaccctgaat agtggggaca tcgttgtatc
      361 agtaaagagc aatgattttg aaagcagtga tgttgttgct ttttattaca ataacaatat
      421 tctggtcaag cgcgtcatcg ctgaagctgg ggattgggtg gatatggata aacaaggaaa
      481 tgtttatgtc aataatcaaa gattggacga gccatatttg gcaaataggg attatggtca
      541 tacagatatt gagtttccct atcaggtacc ggaaaatcga atctttgtca tgggagataa
      601 ccggaaagag tccattgatt cgcgaaacaa cgctattggt acagtctcta atgaacagat
      661 tgttggtaaa ttggttttta gagtatggcc tttgagagag atgggagtaa ttgattaaaa
      721 atgatgaact taaagttaga tagttaaagc aatttagggg gaggaacatg caaaataatt
      781 ttaagtttaa aagattatct ttatggcaga aaaaatatag aaaatttgtt aattttgtag
      841 ctgttgtggt tgtatttgta acaacgtatg cattgatttt accagctctg acactggaat
      901 ctaataaagc tagccaacta tcgggtatca gcagctcaga gacaactact gaaatacaag
      961 gtaatgaaga aactccagta gaagtgacgg aggctgctag tcagatggtt gaagaaagct
     1021 ctgcaataga gcaaacaagc atgacaacaa gtgtgacatc gacaacggag ctttcttcgg
     1081 aaccccagac aactgaaacc acaaaagttg atcaacaggt aataactgaa gcgacagagt
     1141 ttattcataa aggtaaagat tatgaagtta tcgccagatt tgatgcttct gcaaaaatgc
     1201 caaaaggagt ggaactgaag gttaaagaaa ttgaagcggg gacagatacc tacaaatctc
     1261 gatttaataa agccaaggct actctgggag ctcgtgctct aacttttgca agattctttg
     1321 atataagctt tgtgcatgat ggcaaggaaa ttcagccaga ggcaccaatt tccattcaaa
     1381 tcaaaacaga tagcaatatc aaacttaaag aggaaaccaa ggtcgaggct gttcattttc
     1441 aatcagctaa taaggcagaa attgtcccag aagttgaaac caacgaagaa aataatcaag
     1501 tgtcagaaat tagctttgac gcagactcct tctctgatta tggtgttgtt ggggcagagt
     1561 actataaagt aacttttgta gctctggact caaatggaca ggagcagaca gtttcgagtt
     1621 tggttgataa aaaagaggga gcaaaactag aaacgctccc tgaggaaccc ttccgtgctg
     1681 gttatcgctt tatcggttgg cgtgacaaag agacaaataa aattgttact gctgacactc
     1741 tggttacccg agatatgatt gtggaagcag aatttgcttc aatctcaatc tataaagtaa
     1801 cgattcagta tttttataat aacgttactt cgggtcaaaa agttaccttt gaaacagaag
     1861 tttatgagct agaggcggaa gatatgcctt atcgcatcac gacacctgta tccactgaga
     1921 ttaaaagtgg agcagaaagt ggtcttgtga cagacgccat ttactacacc agtagaccca
     1981 tcatagacat acagtctgaa gatttggcga gactagacga agaagatggg aatgtagatc
     2041 atacgctgac cattaaggtt gcttatatcc cctacaattc cgaatacaag gttcattaca
     2101 aactgaaaga cttggatggg acaggttaca cagatattga gacgggaacc tactacggta
     2161 ttatcgggtc tacgattaga ccagaggttc gcaattattc atatgcaaat tttgaaaaga
     2221 cagattctct tgagttgaca aaatcaagtg gacaagagat tgatgtttat tatactcgta
     2281 aagagtatac actttcttac aatactaatg gagggtctta cctcccgcca caaactggac
     2341 tctacaatgc taaggtcaat ctgacaacga caatcccaac tagagaaggt tacacgtttg
     2401 atggttggta tgataatgct aatttaacag gaagccctat tagtggctca gttactttag
     2461 ataagaacaa gacgctctac gctaagtgga aggctgatac tgttaagtac accattgctt
     2521 attataaaga ggtgtacaat aatagcacag gtcaaacgga ctatgcttat gatagttcaa
     2581 ttaatgcaac aggacaagtt ggtacaatca ttcaagcaag tactgctcca gaaatatcta
     2641 gtagaccacc gataggttat gaaaaagaaa ccgcctacgg gaaaaatagc acatcttcta
     2701 tcgtagtcgc agcagatggt tcttctactt tgaaagtcta ctatagcctg attagatata
     2761 ctttaacttt tgatatcaat cggaattcga catcgagatt ctacacctat tatggtcaga
     2821 ttgaaaaagg tggttcaact tatactggaa ctcaatacaa gattagggat gtagttgttg
     2881 gacaagatat tttgaatctt tggccatcag gtggggatga agtttatcag atgttgcgca
     2941 taggaaatgg tacacctggg aaagacgatt ctatgaaatt tagaggatgg actttctcag
     3001 acagtaattc ttataatgtg actcgcagac ctacacttac aaccgatatg attacaacag
     3061 caaatgctaa tcatgaggtt gtcgtaacag ggcattggga aagttcctta aaaacaaaaa
     3121 gggttgacta ttacttgcag tcagcagata atccaaatgt ctatgtatta tctgaacata
     3181 gtcagagctt aaatggtgga caaaattcgc cactcaatgc aaaaacaatt atgggttatc
     3241 aagttattcc tactgttccg gcaggttatg ataatcattc tggaccttat gctacactaa
     3301 acaatggtat aatattgtat gatcattatc gcttctatta taaccgagat agtttcaaga
     3361 ttgattacta ttatggaagt actaagttaa aggatcccga gaatgttctc tttgatgcca
     3421 atatcaatag tgcaatctac aactacacac caagtcggcc agctggagtt gatgctgact
     3481 atacctgggg tggttggtat actgattcca atcttactga ggcatacaca tttgataaaa
     3541 tgccatcaaa caacttggtg ctctacgcta agtgggtggc tccaaacatg acggttagct
     3601 ttgacctaaa tggtggtgaa ggtacagcac cagagtctca aacagttgaa aagaagaaaa
     3661 ttgcgacagt tgttgctgat ccgactagag cccactatga ctttgacggt tggtttacag
     3721 ctaaagaagg tggggagcgc tatgtctggt ctaagccagt cacagaaaat atcacacttt
     3781 atgctcgctg gaaacctcaa cctctcaagt atatggttaa gtacgtagat gctactacta
     3841 ataaaagttt ggcagcagac aaggtcattg agagtccagc acttgaattg catcaggcca
     3901 tcaaagaaaa tgctttagcc atcacaggct acagaccaga tgccagcagt aagacccttg
     3961 atttaaccta tgacaataat gagattgttt tctattacag tgataggaca tcaaaaatac
     4021 catataccgt tcgttacctc cttaaggatg gagataatga tgacagtaac aacaccgtat
     4081 tgttgccaga agaccatctg gaagctgatg ctaatatgat tgttgctaag gctgtagcca
     4141 agggtgtagg aacaggatac tatcctcaaa acaatgtctt gagtcttact ctgacaacaa
     4201 actcagccaa taatatcatt actttctatt atctaccata tgagtttgcg accctcacag
     4261 tcaattacct tgacatggat ggcaacccta ttgctgggca agaccctctg gtagagtata
     4321 agaagaaagg tgatacctat atcctaaacc gtaaggagat tcaaggatat accttctcaa
     4381 cctcaaaaga taacgagaac aatgtagata aatcaatcta tcgtatcaga agaccagata
     4441 agcggacgat taatctttat tataagaaaa atctgacact tgaaggtcag ccaagagaga
     4501 aagtctacga tgacgagccg ttgaaactat caggaataga tgatttaaaa tctggttatt
     4561 caacatctct agctagcggg gataggttga ctgctattga ttttgaggga agtcagactg
     4621 atgtcggctc atcaaatgcg aaaccaaaat cagctgtcat aacaactgct gatggcaaaa
     4681 atcataccga ttactatgag attacctatc ttgacagttc tctgacagtt aaaaaacgtc
     4741 cggttacagt agagattgga agtcaaacga ttgaaaaaat ctatgatggc aaagtgtcta
     4801 ctgttgacta caaggtaaac tcaatttctg atagccttta taaagagtcc gacattcact
     4861 atacaggttc agaaattgaa atgacccaaa aagatgtggg aacttatacc tttgccttac
     4921 aaaataaatt tgttaataca aatgataatt ttgaggttac tttcttagct aaagacggca
     4981 agattactat caatccgcgt aagctaatgt taacgtcagc tacgaaagaa aaagcatatg
     5041 atggaacaga actgacagca caagaagtta gtatgacgac tccagagggt gctagctatg
     5101 atggcttcgt ccaaggcgaa ggtgttgact tctctgattt tgcaagccta actaatccag
     5161 gtaggagaac caatagcttt acttataaag caaaagaggg tacaaatctc agcaattacg
     5221 agattacaga tgagtttgga atgttgacaa ttcttgaaac gcttaacatt accaagacag
     5281 atgaaaattg gaaatctctt gcaggcggta agtttgaact gaccaagtgg gatggtttga
     5341 actgggctca ggtagatggg gtgcaggaat ttgccattac cagcaaagat ggtattcgga
     5401 taccggtagg cttagaagca ggtcgctacc gtctgcaaga attagcagca cctgatggtt
     5461 ttattgtctt ggatagttat atctacttca gcatcaagga aaactttaac gaagataaaa
     5521 catcttcctt ctacactgtt gccttgtctg atgaagcggg caatgatgct agtccagaac
     5581 gagcaacgct taccaaggtt agtggtgatg ccagccatcg catccaagtg gccaatgagc
     5641 agggtagagc cttgccaagc acaggtggag atggacagaa gtggtttatt ctttctggcc
     5701 ttgtcctcat agtcatctcc tatttgatgc atctgtttgt tcaacgtaat cgggaaaaga
     5761 ggtcctagga ctgatttcac gcttacataa ttaaagtatc acaatgggag ttgcaggatt
     5821 tcatgtctgc ttctccttaa taaaaaatga aaaaggaaaa agaaaatcat gaataaatta
     5881 aaaagtctct tcatgaccgt gctggctgtg ttagctatgg tcttgcctac cccttttgct
     5941 agtgcgcaag aggtaaatac aaatgcaggt ggcacaggaa aaattactgt gcgcaatgct
     6001 tcgcaaagcc aaaaatatac catctataaa ctctttgatg ctactgtaac agaagatggt
     6061 tcaggtattt cctacaaggt tccgactgga aaaatacttc cagcagataa tccctacttt
     6121 gccgtggaca gcaaaggtaa tattactgca aaggaaggtg ctactgtctc ttcagaagca
     6181 tttgcggctt gggcaaagaa tttcggtaca gaagttacaa gtgctacagc gaatgataac
     6241 tctcttgtgt ttacacattt gacatttggt tactattttg taacatcatc acttggtgca
     6301 gtgcttacag tagatagtac aacaccaaat gcaactgtta tcgacaaaaa taccactaat
     6361 ccaaccattc cagattcaaa taatggtggc ggtaagaaaa ttcttagcaa tggtgctaca
     6421 actagtgaaa caactgcaaa aattggcgat accatcaact tccaaatcaa gtttaatgct
     6481 accaactacg ttactaaaga tagacaaacc aagcagattg tttcttacgc tatcgaagat
     6541 agcccaacag ccctcgcaat tgatcaaaat tctgtcaacg ttaaagtgga tggtgtggat
     6601 atcacagcaa aaatttcgaa gacttttgat gcaacaggca aaatgaatct tgtccttaca
     6661 tgggcggatg cggcagctag taataaaacc atctataact ctccagctga agttattatc
     6721 acctactcag cagtggtgac taaagatgcc aaggagggag aagcaaccaa ctcagcgact
     6781 attggttaca acacaattga taatccaaca actcctccaa caccagttga tccagacaag
     6841 ccaactgaaa caacaaaagt gactactcac cgtttcactt tgaaaaaaac aaacaatgta
     6901 ggtgaaactt tgacaggtgc agagttcaaa ctctatgatg cagccaacaa tggaactgaa
     6961 atcaaggttg tcaaggaatc tgacggagtg tatcgtgttg cgcaggctga tgagcaaggt
     7021 gttgtcatcg aagctggcga agttgtgatt aaaggtctga aacatagcac gacctattat
     7081 cttgaagaaa tgaaagcacc gaatggttac aatatcttga cagaacgtca atccattgaa
     7141 gtgaaagaga ataacacagc acaagcaaat atcgtcaata aaaagggtgg tgtcttgcca
     7201 agcactggtg cgattggaac aactttattc tatctagttg gttcaatcct acttttggta
     7261 gcattggttt atactatttc aaaacgtcgt atgaacaata tctaattgtc catacaatac
     7321 ctaatattta gaatctatct tcggaagtgc aaaagcaaga gtggaagtat ttccgaagat
     7381 atttctttgg tctcaacaca aggaaaggag gggatttcat gatcaaatgg ctcaaaaaga
     7441 aaggtccgtc ttttatcatg ccattaattt ttatattggg gattggacta ttggcttatc
     7501 catcggtcag tgattactgg aattccttcc accaatcaga ggccatcatg tcctattctg
     7561 acacagtatc agatatgaca gctgaccaat acaaagaaat cattgatagt gcgcgccagt
     7621 ataatcaaga aaaaccctta aactggaatg tgactgcatc cgacattgaa gcctataatc
     7681 aggaattgaa tttcaataaa gatggcatca tgggctatat tgagattcct aaaattgatg
     7741 tcaagttatc tatatttcat gggacagacg aaacggtttt agagacttct attggacatc
     7801 tagaaggaac atcgttgcct gtaggaggtt tgggaactca tagtgtactt tcagggcatc
     7861 gtgggctccc atctgcccgt ctgttttctg atttagataa gttgagagaa ggcgatatat
     7921 ttaccattca tgttctcaat gaaacactaa cttacaaagt ggaccagatt cgagtggttg
     7981 agccatcaga tttatcggct cttaccatag aacctcagaa agacttattg accttggtaa
     8041 cctgtacacc ctacggtatt aatacacata ggctattagt tcgtggctat cgtattgaaa
     8101 atgttaatgg tagtgctttg gttacctctg atgctatcca aattaaagca atttttattg
     8161 ctccatttat cgcaactcca attctatttg taatcttaat ttatattttt ataacaacta
     8221 gtaaaacatt tcgttcttgg aataggaatc aagtgttgga tgatttttta gttcccaaga
     8281 aattttgaac tattgaaaat gtttcaaagt cgatttgact ctggaacatt tttctattat
     8341 agacattaga caatatggct gaatgaggta attgttcaac ttctaacctc ctgtcaactc
     8401 aaatcaattg cctagaccga cgattgaaac gacttctttc tagtaacgga ccacgaggaa
     8461 agaggtggca gatattgtag aaatgtcgtt gagatgtcat acctagttca gcttgtaaca
     8521 aaagcaagac aaggagtaat ctatctgaaa gcctacatta cgccgaagtt aaaaggaatc
     8581 tgggcaatag ttttggtaga aatgatga
//
LOCUS       DASFRC010000091         8597 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.091, whole genome shotgun sequence.
ACCESSION   DASFRC010000091 DASFRC010000000
VERSION     DASFRC010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8597)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8597)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8597
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.091"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            27..278
                     /locus_tag="U1087_001446"
     CDS             27..278
                     /locus_tag="U1087_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holin"
                     /protein_id="HEM4755915.1"
                     /translation="MKQIKNRLKKHMFWIGLISLVLMLVDNVLFCYFNIECSRTLNQI
                     EQTICIILSILVFLGVLNNKPDVKVEDIIKNGMSSKNQQ"
     gene            628..1383
                     /locus_tag="U1087_001447"
     CDS             628..1383
                     /locus_tag="U1087_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HEM4755916.1"
                     /translation="MIMKRTILLCLPTILLLAACHQNTNQANTTKNSSTVVSTTSSQS
                     ASITSEQSTSSSTSAETNQEVTSTETQVNFNGYYYSVQGKYGEVIIANKKHPLAADYA
                     PGENPEALAAFQRLIADMQALGFGVSNNYSGFRSYETQASLYQSYVNQEGQAAADRYS
                     ARAGYSEHQTGLAFDLLDTSGNLLEEPNASQWLATNAHLYGFIVRYLPGKESSTGYMA
                     ESWHVRYIGQEATDIYNSGLTLEEYFGVPGGDY"
     gene            1472..1915
                     /locus_tag="U1087_001448"
     CDS             1472..1915
                     /locus_tag="U1087_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM4755917.1"
                     /translation="MLKAMEVYLVTNGNGLEAIEFYKNSLGATVEQGNLFKDFLPDCP
                     AELENYVMNAQFRLNGQRFMLSDNNPEMPYTVGDNITVALITDDAETAQELYSKLSVD
                     ATAINMELQAVPWSPAYGNVTDKFGISWQINAEVEGYGQEYYAEN"
     gene            complement(1938..3548)
                     /locus_tag="U1087_001449"
     CDS             complement(1938..3548)
                     /locus_tag="U1087_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HEM4755918.1"
                     /translation="MSKSIIWELVKINILYSNPQLLASVKKKQSKRKDASFSAYKSVL
                     LQQVFMVLSFGLLYSVFFMGVDYSQSIGFFSLQLALFTIIAIVYGFTGFFSVFYDSKD
                     TKLYLALPLKPQEVFLAKILSAQGMVLPFLMPCLSLLLITYWQIGGPLLALASIPSFL
                     ILWILVNLVNLIIMHFVGEVLTKSPRKTLISTILMTGSSLLAFAALMFLQSQQTVSLE
                     SGGFVDFPIIPIFAGFHYLVSHTISLETLLHFGLPLILMFGLIVFAFKTVIPNYFNQV
                     LAIENASTKRTNNAKSAKIPSNLNQALVKHHLSTLKDSNLMVQTMIQPIIMGVALFPS
                     FSRFTENGGLSSVGWDFFGIALLAGFLLGSLFAGSTTFIGVAMSLEKENYHFIRTLPI
                     SFRKFIIQKFWVLAAVQFALPTLLYFALALGFMKVKLILAVFFTVGIIISALLTGQIY
                     YWRDQRLLMLNWQNSNQLFGRGAGQWLIAGSIIGTMFLGAIILVVSIILAGTIGAAYV
                     SSALMTLLFVLSAALQLYIYKAYWQKLK"
     gene            complement(3545..4288)
                     /locus_tag="U1087_001450"
     CDS             complement(3545..4288)
                     /locus_tag="U1087_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4755919.1"
                     /translation="MIQFDHITKTYGETIALDDLNLTIESGEIFGLIGHNGAGKTTTI
                     SLLTSIIEASYGTISVDGLNLEENRDEVKKRIAYVPDSPDIFLHLTAFEYWHFMGKVY
                     GVQKDTVDDRIAKLSSLFDMTARQHEPIDSFSHGMRQKTIIIGALIPNPDIWILDEPL
                     TGLDPQASFDLKQMMKEHAQSGHTVLFSTHVLSVAEQLCDRIAILRKGQLIFVGSLDE
                     LKSQYPDKDLETIYLELAGRQQVKAGEEV"
     gene            4529..6313
                     /gene="uvrC"
                     /locus_tag="U1087_001451"
     CDS             4529..6313
                     /gene="uvrC"
                     /locus_tag="U1087_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HEM4755920.1"
                     /translation="MNDLIKHKLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSY
                     FRGAHDTKTEALVSEIADFEFIVTDSNIEALLLEINLIQENKPRYNIMLKDDKSYPFI
                     KITKERHPRLIITRQIKKDGGQYFGPYPDVGAANQTLKLLERLYPFRKCKLPENKYCL
                     YYHLGQCLAHGENLPSLSDYDKMAKEVAQFLTGHDDKIVKEVQDKMKAAAGNLEFEKA
                     AEYRDVLQSISTLRTKQRVMAHDLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNL
                     FPYYNDADEDFLTYIGQFYRDQQHLIPSEVLIPQDIDQEAVEALVDTKVIKPQRGEKK
                     QLINLATKNARVSLEQKFNLLEKNLEKTYGAVENIGQLLGIPTPVRIEAFDNSNIMGT
                     SPVSAMVVFENGVPNKKEYRKYKIKTVEGPDDYASMREVLQRRYSRVLRDDLTPPDLI
                     IIDGGQGQVNVAKQVIEQELGMSIPIAGLQKNDKHQTHELLFGNPLEVVELPRNSQEF
                     FLLHRIQDEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQALMKHFKSIGNIQSA
                     SLQEIAEAGVPYKVAELVKENLSSKDEI"
     gene            6370..6498
                     /locus_tag="U1087_001452"
     CDS             6370..6498
                     /locus_tag="U1087_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4044 domain-containing protein"
                     /protein_id="HEM4755921.1"
                     /translation="MAFGEEKHKKTTFEKVTLVIVVVMVVATLAGLILPAINALMN"
     gene            6703..8016
                     /gene="obgE"
                     /locus_tag="U1087_001453"
     CDS             6703..8016
                     /gene="obgE"
                     /locus_tag="U1087_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000061643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HEM4755922.1"
                     /translation="MSMFLDTAKIKVKAGKGGDGMVAFRREKYVPNGGPWGGDGGHGG
                     NVVFVVDEGLRTLMDFRYNRRFKADDGEKGMTKGMHGRGAEDLIVRVPQGTTVRDADT
                     GKIITDLVENGQEFVIAHGGRGGRGNIRFATPKNPAPEISENGEPGEERNLELELKVL
                     ADVGLVGFPSVGKSTLLSVITAAKPKIGAYHFTTIVPNLGMVRTKSGESFAVADLPGL
                     IEGASQGVGLGTQFLRHIERTRVILHVLDMSASEGRDPYEDYIAINNELETYNLRLME
                     RPQIIVANKMDMPEAEEHLEEFKKKLAANYDEFEELPQIFPISGIAHQGLENLLEATA
                     ELLEKTPEFLLYDESDFQEEEAYYGFNPDEPEFAISRADDASWMLSGDKLEKLFTMTN
                     FDRDESVMKFARQLRGMGVDEALRARGAKDGDIVRIGKFEFEFVD"
     gene            8390..8554
                     /locus_tag="U1087_001454"
     CDS             8390..8554
                     /locus_tag="U1087_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755923.1"
                     /translation="MGDKPISFKDKDGNFVSAADVWNAEKLEELFNRLNPNRKLRLER
                     ERLAREQEKE"
BASE COUNT         2646 a         1586 c         1967 g         2398 t
ORIGIN      
        1 tttatacatc aaaaaggagt atagatatga aacaaataaa gaatcgtttg aaaaaacata
       61 tgttttggat tggactcatt tcgttggtat tgatgctcgt tgataatgtc ctattttgtt
      121 attttaatat tgaatgtagt cgtaccttaa accaaatcga gcagacgatt tgtatcatcc
      181 ttagtattct tgtattttta ggagtgctaa ataataaacc ggatgtgaag gtagaagaca
      241 tcataaaaaa cggtatgtca tctaaaaatc aacaataatg tttgtttaga aactactgat
      301 gaggtatcaa gttgtactta cagttcagta tctctagcta atactaattt ttcaaaatgc
      361 agtcagtatt tcctaaaaaa ctattttgta tataaatcac tttacttgtg aatacgatta
      421 tttaacatca tatatgtcca ccagtcgaaa ggctggtgtt tcaatttatg gcatgtatgt
      481 tatcgtgaat accactactt gaaggaaaag aatcgagaga aattcaatga acactaaaaa
      541 tatcgatagt agttaaaatc acaagccgtc gttagacgga gttttatgat tgtgctacaa
      601 tagacataat tataagagaa cggggtgatg ataatgaaac gtactattct gttatgcttg
      661 ccgacaatac tgttactagc agcatgtcat caaaatacaa atcaggccaa tactaccaaa
      721 aattcgtcaa cagttgtttc gactacttca agtcagtctg cttcaataac ttcggagcag
      781 tcaacaagca gctctacatc ggcggaaacg aatcaagaag taacaagtac agagactcag
      841 gtaaatttta acggttacta ttatagtgta caaggaaaat atggcgaagt gattatcgca
      901 aataaaaagc atccgcttgc agctgattat gcaccgggcg aaaatcctga agccttagca
      961 gcttttcaac gattaatagc agatatgcag gcgctaggat ttggtgtctc caataactat
     1021 agtggatttc gttcctatga aactcaggca agtctctacc agtcttatgt aaatcaggaa
     1081 ggacaagcag cggcagatag gtattctgca agagctggat atagtgaaca tcagacagga
     1141 ttagcctttg atttattgga tacaagtggt aatttattag aagaacccaa tgcttctcag
     1201 tggttggcta cgaatgcaca tctatatggc tttattgtcc gctatcttcc aggaaaagag
     1261 tctagcacag gctatatggc agaatcctgg catgtgcgat atattggtca agaagcgaca
     1321 gatatttaca attcaggctt gaccttggaa gaatattttg gtgtgccagg tggagactac
     1381 taattttaca tttagtcaga aataagtcga aaaatttgtc cgtataacta actcgtgata
     1441 taataaacca tcataatttt ggaggtccat catgcttaaa gcaatggaag tatacttggt
     1501 tactaatggt aatggtttag aagccatcga gttttataaa aattctcttg gggcaacagt
     1561 tgagcaagga aatctattta aagatttctt accagactgt cctgctgaac tagaaaatta
     1621 cgtgatgaat gcacagtttc gtttgaatgg tcaacggttt atgttgtcag acaacaaccc
     1681 agaaatgcct tatacagtag gtgacaatat tacagttgcg cttatcacag acgatgctga
     1741 gacagcgcag gaactataca gcaagttatc cgtagatgca actgctatca atatggaact
     1801 tcaagcagtt ccttggtctc ctgcctatgg taatgtaaca gacaagtttg gtatctcttg
     1861 gcaaatcaat gctgaagtag aaggctacgg tcaggaatat tacgcagaaa actaaaatag
     1921 attggacaac gtccaatcta ttttagtttt tgccaataag ctttgtagat ataaagttga
     1981 agagcagcag atagaacaaa tagtaaggtc atcaaggctg agcttacata agctgcacca
     2041 atagtgccag ctaatatgat gctgacaact agaataatgg ctccgagaaa cattgttcct
     2101 atgatcgatc cagcaatcaa ccattgaccc gctccgcgac caaataactg gttactattt
     2161 tgccagttga gcatgaggag tcgttggtca cgccagtaat aaatctgacc agttagcagg
     2221 gctgaaatga tgatgccgac tgtaaagaag actgctagaa tgagtttgac tttcatgaaa
     2281 cctagagcca aagcaaagta aagtagagtt ggtagtgcga attgcacggc agccaatacc
     2341 cagaattttt ggataataaa ttttctgaaa cttataggaa gcgttcgaat gaaatgataa
     2401 ttttcctttt ccaatgacat ggccactccg atgaaggttg tagaaccagc aaatagactg
     2461 ccaagcaaga atccagctaa tagagcaata ccaaagaaat cccatccaac tgaacttaga
     2521 ccaccatttt ccgtgaaacg gctaaaactt ggaaaaagcg ccactcccat gatgattggt
     2581 tgtatcatgg tttggaccat gaggttgcta tctttaagag tagataggtg gtgtttcact
     2641 aaagcctgat tgagattgct aggaatcttg gcagacttag cattattggt ccgttttgtc
     2701 gaagcatttt caatcgccaa aacttgatta aagtagttgg gaatgacagt tttaaacgca
     2761 aacacaataa gtccaaacat caaaatgaga ggaagtccaa aatgaaggag tgtttctagt
     2821 gatatagtat ggctgaccag gtaatggaat ccagcaaata tgggtatgat aggaaaatca
     2881 acaaagccac cggattcgag tgaaacggtc tgctgagatt gcaggaacat gagcgcagca
     2941 aaagccagca aggaagaacc tgtcatcagg attgtagaaa tcaatgtttt acgagggctt
     3001 tttgtcagaa cttccccaac aaagtgcatg ataatcagat tgactaaatt aactaaaatc
     3061 cagagaatca aaaaggaagg aatggaagct aaggcgagga gcggaccgcc aatttgccag
     3121 taagtgatta gaagtaaaga cagacacggc atgaggaagg gtaggaccat cccttgtgca
     3181 gagaggattt tagcgaggaa gacttcttgt ggcttcaggg gaagtgctaa atacaacttt
     3241 gtatccttac tatcgtagaa aacggagaag aaacctgtaa aaccgtagac aatggcaata
     3301 atggtaaaga gcgctagttg cagagaaaag aaaccgatgg actgactata atctactccc
     3361 atgaaaaaga cagaatagag aagtccgaaa ctcaaaacca taaatacttg ttgcaagagg
     3421 acacttttat aggctgaaaa ggaggcgtct ttgcgcttac tttgtttctt cttgacggaa
     3481 gctagaagtt gagggttgga ataaagaata ttaatcttta ctagttccca aatgatggat
     3541 ttactcatac ttcctcacct gccttcactt gttggcgccc agctaattcc aaatagatgg
     3601 tctccaaatc tttatctgga tactgtgatt tgagttcatc aagacttcct acgaaaatga
     3661 gttgcccttt tcggagaata gcaatgcggt cacagagttg ttcagccact gaaaggacgt
     3721 gtgtagaaaa tagaacggtg tgaccagatt gagcatgttc tttcatcatt tgttttaggt
     3781 cgaatgaagc ctgaggatcc agtccagtta ggggttcatc caaaatccaa atatcagggt
     3841 tagggatcaa tgcaccaata ataatggttt tctgacgcat accgtgtgaa aaactatcaa
     3901 taggctcatg ctggcgcgct gtcatatcaa atagactaga tagtttagcg atacggtcat
     3961 caactgtatc cttttgtaca ccatagacct tacccataaa gtgccagtat tcaaatgctg
     4021 ttaagtgtag gaagatgtct ggcgaatctg gaacataggc tatccgtttc ttgacttcat
     4081 cgcggttctc ctctaggttt aaaccatcaa cagagatagt tccataactg gcttcgatta
     4141 tcgaagtcaa tagactgatt gtcgttgttt ttcctgcccc attgtgacca attaaaccga
     4201 aaatctcgcc actttcaatt gtcaaattta ggtcatcaag tgcgattgtt tcgccgtatg
     4261 tttttgtgat atggtcaaat tgtatcatag taacctcctt gttattcgtg aactaaaagt
     4321 aggggcttgc taagtagtcc aagccgtatt ccaaatgttc ttcgaataat atatacaatt
     4381 aattacattt attatactgc ttaattagta caaaagcaat agtttctatc aatatttttg
     4441 tagtatggat gtggatatat tccaagaagt cgagtataaa aaggaatgca ataagctcga
     4501 ttatcagaaa atttgctata atagacctat gaacgatttg atcaagcaca agttggagtt
     4561 gctgccggac agtcctggct gttacctcca taaaaacaag tacggtaaga ttatctatgt
     4621 gggcaaggct aaaaacctgc gtaatcgggt gcggtcttat tttcgtggtg cccatgatac
     4681 caagacagag gccttagtgt cagagattgc ggactttgaa tttatcgtaa cggattctaa
     4741 tatcgaggcg ctcttgttgg aaatcaatct gatccaggag aacaagcctc gctataacat
     4801 catgctcaag gatgacaagt cctatccctt tatcaagatt accaaggaac gtcatccgcg
     4861 actaattatt acacggcaga ttaagaagga tggtggtcag tattttggtc cctatccaga
     4921 tgtgggtgcg gccaaccaga ccctcaaact attggagcgc ctctatcctt tccgcaagtg
     4981 taaattgcct gagaacaagt attgtcttta ctaccatttg ggacaatgtt tggctcatgg
     5041 ggaaaacctg cccagtctgt ctgactatga caagatggcc aaggaagtgg cccagttctt
     5101 gacgggtcat gatgataaga ttgtcaagga agtgcaggac aagatgaagg cggctgctgg
     5161 caatttggaa tttgaaaagg ctgcggaata tcgtgatgtc cttcaatcca tttcaaccct
     5221 acggaccaag caacgagtga tggctcatga cttgcaaaac cgcgatgtct ttggttatta
     5281 tgtagacaag ggctggatgt gtgtgcaggt tttctttgtt cggcagggga aactgattga
     5341 gcggaatgtc aatctttttc catattataa tgatgcggac gaagactttt tgacctacat
     5401 cggtcagttt tacagggacc agcaacattt gattccctct gaggtcttga taccgcagga
     5461 tattgaccaa gaagccgtag aagctctggt agataccaag gtcatcaagc ctcagcgtgg
     5521 cgagaagaag caactcatca atctggcaac caagaatgcg cgtgttagtc tggagcagaa
     5581 gtttaatctc ctggagaaaa atctggagaa gacttacggt gcagtggaga atatcggtca
     5641 gttgctgggg attccgacgc ctgtgcggat tgaggccttt gacaactcca acatcatggg
     5701 caccagccct gtgtcggcta tggtggtctt tgaaaatggg gtgcctaata aaaaagaata
     5761 ccgcaagtac aagattaaga cggttgaggg gccagatgat tatgcctcta tgcgtgaagt
     5821 gctgcaacgc cgttatagtc gggtcttgag ggacgatttg acaccgcctg atttgattat
     5881 cattgacgga ggtcaggggc aggtcaatgt cgccaagcag gtcatcgagc aggagttggg
     5941 tatgtccatt cccattgcag gtttgcagaa gaatgacaag caccagaccc acgaattgct
     6001 ctttggcaat ccgctggaag tggtggagtt gccacgtaat tctcaggaat ttttcctcct
     6061 gcatcggatt caagatgagg ttcaccgctt tgctattgaa tttcatcgtc aggttcggtc
     6121 aaaaaattcc ttctcatcta aattggacgg catagaaggt ttgggaccaa aacgcaaaca
     6181 ggctttgatg aagcatttca agtctattgg caatatccag tcggccagtc tacaagaaat
     6241 cgcagaagca ggtgtgccgt ataaggtggc ggagttggtc aaggaaaacc tttcttcaaa
     6301 ggatgagatt tgaaaacatt cccataatgt gttagaataa actatcaatg actaaataag
     6361 gagaaagcaa tggcttttgg tgaagaaaaa cacaaaaaaa caacatttga gaaagtgact
     6421 ttagtaatcg ttgtcgtgat ggttgtcgcg acattggctg gcttgatttt accagctatt
     6481 aatgcattga tgaattaaga acctgtattt acagttcggc acttttatct aaggttggtt
     6541 tttaagctgt tcatcgttag ttttttcaaa atacagtcag tattctctca aagaacgacc
     6601 ttgattagct aaaaaacttc tcttatatat aagcacttcg cttgtgaata gaggtctaaa
     6661 acgcttttaa gcgttttttt ctaggaaaga atagggtaaa ttatgagtat gtttttagat
     6721 accgccaaga ttaaggtcaa ggcaggtaag ggaggcgatg ggatggttgc cttccgtcgt
     6781 gaaaagtatg taccaaacgg cggtccttgg ggcggtgatg gtggtcatgg tggaaatgtt
     6841 gtcttcgttg tagatgaagg cttgcggacc ttgatggact tccgttacaa tcgtcgcttt
     6901 aaggctgatg atggtgaaaa agggatgacc aaaggtatgc acggtcgagg agcggaagat
     6961 ttaattgttc gtgtaccgca gggaacaact gtgcgtgatg ctgatacggg taaaattatt
     7021 acagacttgg ttgaaaatgg tcaagaattt gtcattgctc acggtggtcg tggtggtcgt
     7081 ggaaatattc gttttgcgac acctaagaat ccagcgcctg agatttctga aaatggagaa
     7141 ccaggtgagg agcggaacct tgaattggaa ttaaaagtac tagctgacgt tggtcttgtt
     7201 ggttttccgt cagttggaaa atcaacgctt ctcagtgtta ttacagcagc taaacctaaa
     7261 attggtgcct accattttac aaccattgtg ccaaatttgg gaatggttcg gaccaaatct
     7321 ggcgagtcat ttgcagtggc tgatttgcct ggcttgattg aaggtgctag tcaaggtgtt
     7381 ggattgggaa cgcaattcct acgtcatatt gagcggacac gtgttatctt gcatgttttg
     7441 gacatgtcag caagtgaagg ccgtgatcct tatgaggact atatagccat caacaatgaa
     7501 ttggaaacct ataatcttcg tttaatggag cgccctcaga ttatcgtcgc caacaagatg
     7561 gacatgccag aggcagagga acatttggaa gagttcaaga aaaaattggc agccaactat
     7621 gatgagtttg aagaattgcc acagattttc ccaatttctg gtattgctca ccaaggtctg
     7681 gaaaatctac tagaagccac agccgagttg cttgagaaaa cgccagaatt cttgctctac
     7741 gacgaatcag atttccaaga agaagaggct tactatggct ttaatccaga tgaaccagaa
     7801 tttgcaatca gtcgtgcaga cgatgcaagt tggatgctat ctggtgacaa gctggaaaag
     7861 ctcttcacca tgaccaactt cgatcgcgac gaatctgtca tgaaatttgc tcgtcagtta
     7921 cgtggaatgg gtgtcgatga agccctccgt gcgcgtggtg ccaaagacgg cgatatcgtc
     7981 cgtattggca agttcgaatt tgagtttgtt gattaacgta gcagtttgac tgcaagttaa
     8041 cttgctagtc aaactacgcc aagtcctagg gggaccttgg ctagctacct tactaacttc
     8101 acccaaatgg tagtatcgac catttgggtt ccatgtcgta acgttggaaa cacacttaaa
     8161 tcctaaagga cttgatgtga tacggtagcc gctatggcgg actacctacc aaccttacta
     8221 attccgcaca ggcagtggta tcgactgcct gtactccata tcgtaacctg tccggtaagt
     8281 tagtctagta tgaacttaga aattcgagag cagactatag ctttacaaat tttgttcagt
     8341 tggtgacagt cgtttgtgag caatcgaaaa aaaatagttg gaggtctgta tgggtgataa
     8401 gccaatatcc ttcaaggata aagatggaaa ttttgtttca gcagccgatg tttggaatgc
     8461 tgaaaaatta gaagaactct ttaacaggct caatcccaat cgcaaactcc gtttggaacg
     8521 tgagcgtttg gcaagagagc aagaaaagga ataacgtcaa aatctgcttg ttgtatcaga
     8581 aaacaggcag atttttt
//
LOCUS       DASFRC010000092         8495 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.092, whole genome shotgun sequence.
ACCESSION   DASFRC010000092 DASFRC010000000
VERSION     DASFRC010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8495)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8495)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8495
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.092"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(31..1302)
                     /locus_tag="U1087_001455"
     CDS             complement(31..1302)
                     /locus_tag="U1087_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxic anion resistance protein"
                     /protein_id="HEM4755924.1"
                     /translation="MSGFNFDIDQIANNSLSTKDKTTELIQATPTGDNSKVSFLAQLT
                     PEQQTGIRAKAPQLVDNFLANQNALLDFGKEAVEEVNATVNHILSEQKKIEIPQVDEL
                     LANTNRELNGFVAKYKDISTTAELEKKPGFFQRLFKQTKNDLQEFYFDSQTIEKKMDS
                     MAASVVKQEEVLARNIVSAELLIENNTKSIENLVGVIAFIEATGQEAAERAKLAQENL
                     ATLVPTTVDYQVASEKLARVTEVANILEQQHSEYMSRLYVAWTTTPQMRNLVKVSSDM
                     KQRLGMLRRNTIPTMKLSIAQLGILQQSIKSSQTADAIVNANNAALQMLADTSKEAIP
                     MMERTAQNPTLSVASVTKLAESLVAQNNGIIAAIDEGRQKRRELDAAIVRSAETINDS
                     VKLRDQKIIAALLEQGKEAQSEAEQPLETNQ"
     gene            complement(1308..2135)
                     /locus_tag="U1087_001456"
     CDS             complement(1308..2135)
                     /locus_tag="U1087_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755925.1"
                     /translation="MGHKYKKYKKYGKNNSGLVALLVLLAIGFVMSFWYILLPTGLLI
                     GYFYKREAIQRFLNRDSIKRSQVLALSIRSGYEKHQELFVEKGEDKVVLQLRNRLLGQ
                     LFELDQLYQKVGKYLNGYESKEVVDTLQLKYHLKLPEAKTEKNTDTQVSTGGNAVMDE
                     QGMIADLAPEILETYCNIQRDNLVILEKLEKATDKREELTAIHEANMNRFNDILQGYL
                     KIKKSPKDYFNAEERLVQAKSAMEMFDKDLDDTIKQFNEAGMKDFEVSLRMMKREEE"
     gene            complement(2229..2885)
                     /locus_tag="U1087_001457"
     CDS             complement(2229..2885)
                     /locus_tag="U1087_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEM4755926.1"
                     /translation="MSVKDFMTRKVVYISPDTTIAHAADIMREQDLHRLPVIENDKLV
                     GLVTEGTIAEASPSKATSLSIYEMNYLLNKTKVKDVMIKNVITVSGYASLEDAAYLMY
                     KNKVGILPVVDNGQLYGVITDRDIFAAFLHVSGYGEEGVRARFLVENKAGELEKIIRL
                     VADKDYNIVSTVQLATKSGKVVIEVQIDGKVDVEEVRTLFEGAGIQVDSLVPTVAKNI
                     "
     gene            complement(3199..5436)
                     /locus_tag="U1087_001458"
     CDS             complement(3199..5436)
                     /locus_tag="U1087_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HEM4755927.1"
                     /translation="MSRSIKLPCQPIHLAVLAVAAYFAVHSFSLLTMGLLSLVLAVFG
                     VRQGKTVFLKTLLLLALCGLFFGYQKVQWERADQSAPEQVTTVQVIPDTIEVNGDSLS
                     FRGRSDGQTYQVFYKLASQEEQTYFQELTDLVQLEVEAEVSLPAGQRNFNGFDYQAYL
                     KTQGIYRTVKISAIKKIVPIQSWNVFDLLSSWRRQALVYIKTNFPAPMSHYMTGLLFG
                     ELDSEFDQMSDLYSSLGIIHLFALSGMQVGFFIDKFRWILLRVGLTKETVDKLQIPFS
                     LVYAGLTGFSVSVVRSLVQKILGNLGLRKLDNFAVTVFVCLLILPRFLLTAGGILTFT
                     YAFLLTVFDFEDLGQVKKAAVESLSISLGILPVLMTYFYAFQPLSILLTFVFSFVFDV
                     LLLPGLSVIFLLSTLVKITWVNGFFVLMEKIIVWVADLGFRPWILGKPSGVILVLLLV
                     SLFLLYDFHRKKKWLLGLSMVLALLFFITKHPLENEVTVVDIGQGDSIFLRDMRGRTV
                     LIDVGGRVDFAAKEEWQERSSQANAERTLIPYLHSRGVDRIDSLVLTHTDTDHVGDVL
                     EVAKQVQIGRIYVSPGSLTVPDFVATLKEINVPVHVVAVGDRLPIFDFYLEVLYPDGT
                     GDGGNNDSVVLYGRLLETNFLFTGDLEQGELDLIEAYPNLPVDVLKAGHHGSKGSSYP
                     EFLDHIGAKIALVSAGENNRYKHPHQETLERFDSRNIQVYRTDQQGAIRFRGWREWRI
                     ETVRR"
     gene            complement(5420..6082)
                     /locus_tag="U1087_001459"
     CDS             complement(5420..6082)
                     /locus_tag="U1087_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HEM4755928.1"
                     /translation="MDTIKTYIEMLKEYKWQIALPAVAGLLMATFLIFSQPAKSDQTG
                     LTDFPQTEQTSSGQEQTEETSTEASEEPIQLVIDIKGAVVKPGLYTLEADARVNDAVE
                     AAGGLTSQADPKSINLAQKLSDEAVVYVASKDENISVVASTTASSAMSQEEKSTSLVN
                     LNTATEADLQTISGIGAKRAADIIAYREANGGFKSVDDLNNVSGIGDKTMESIRPYVT
                     VD"
     gene            complement(6149..6895)
                     /locus_tag="U1087_001460"
     CDS             complement(6149..6895)
                     /locus_tag="U1087_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEM4755929.1"
                     /translation="MFYSYLRTLLTFLLWAINGNIHYHDREKILPQEENYILIAPHKT
                     FWDPVFLGYAAAPKQFIFMAKKELFKDRGFGWWISKCGAFPIDRDNPGMAAIKYPVNM
                     LKKSDRSLVMFPSGSRHSSELKGGVAVIAKSAKVKLMPATYVGPMTIKGLLAGERIDV
                     AFGNPIDVSDIKRMDDAGTAEVTSRIEAEFKRLDDHAASFQTKKKPNILTYIYRIPVL
                     LLVALILGLTYSFSYIASFFWQPSTQLDKK"
     gene            7042..8487
                     /locus_tag="U1087_001461"
     CDS             7042..8487
                     /locus_tag="U1087_001461"
                     /EC_number="6.3.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019792455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-
                     lysine ligase"
                     /protein_id="HEM4755930.1"
                     /translation="MIKIERVVDILKADANFRHIKQNDQTDSTWTDVQFDALSYDSRT
                     VSPSTLFFAKGLAFKKEFLEKAIEAGLAFYVSEIDYEVSIPAIIVHDIKQAMSLIAME
                     FHGHPQKQLKLLAFTGTKGKTTAAYFAFNILKQSHKPAMLSTMNTTLDGKTFFKSTLT
                     TPESLDLFAMMAEAVKNGMSHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIE
                     HPTFEDYFYHKRRLMDNSRAVIVNAGMDHFEVVKEQVSSKDHDFYGPTSENQISQSAG
                     FDFTATGKLAGHYDIQLIGGFNQENAIAAGLACLRLGASLEDIHTGIAQTNVPGRMEV
                     LTQQNGAKVFVDYAHNGDSVKKLIDVVLEHQTGKVFLILGAPGNKGESRRKDFGLLLN
                     DYPQIEVILTADDPNREDPAAIAEQIRAHMTRPSNFILDREEAIRTAMSQTTSSQDAV
                     IIAGKGADAYQIVNGEKAAYDGDLEVAKQYL"
BASE COUNT         2425 a         2072 c         1703 g         2295 t
ORIGIN      
        1 ctgcagtttc gctgaactgc aggttttata ttattgattg gtttcaagtg gttgctctgc
       61 ctcagactgt gcttctttgc cttgctccag caaagcagca atgatttttt gatcgcgtag
      121 cttaacagaa tcgttgatag tctctgctga ccgtacaata gctgcatcca actcacgacg
      181 tttctgacgc ccttcatcta tagctgcaat aatgccatta ttttgggcaa ccaaactttc
      241 tgccaatttg gtaacagatg ctactgaaag ggtcggattc tgagctgtgc gttccatcat
      301 cgggatggct tcttttgatg tatccgcaag catttgaagg gcagcattat tagcattgac
      361 aatcgcatct gccgtctggc tagacttgat agattgttgt aagatgccca actgtgcaat
      421 ggacaatttc attgttggaa tagtattgcg acgtaacatc ccaaggcgct gtttcatatc
      481 cgaagaaacc ttgaccagat tacgcatctg cggtgtcgtt gtccacgcaa catacaagcg
      541 actcatatac tcagaatgtt gttgttcgag gatattagca acctctgtta cacgtgccaa
      601 cttctcagaa gctacttgat aatcgactgt agtcggtact aaagttgcga ggttttcttg
      661 tgccaatttt gcacgctctg ccgcttcctg accagtcgct tcaataaagg cgatgacccc
      721 caccaaattc tcgatagact tggtattatt ttcaatcaaa agctctgcag aaacaatatt
      781 gcgcgccaac acctcttcct gcttgaccac actggctgcc atgctatcca ttttcttttc
      841 aatggtctgc gagtcgaaat aaaattcctg caaatcattt ttggtctgct tgaacaggcg
      901 ttggaagaaa cctggtttct tttctaattc agcagttgtg gaaatgtcct tatacttagc
      961 cacaaaacca ttcaattcac ggttggtatt ggccaaaagc tcatccacct gtggaatttc
     1021 aatcttcttc tgttctgaca aaatgtgatt gaccgtggca ttgacttctt ctaccgcttc
     1081 cttaccaaaa tccaagaggg cattttgatt agctaagaaa ttatccacca attggggagc
     1141 cttagcacga atacctgttt gttgttccgg tgtcaactgt gccaagaaag acacttttga
     1201 attatctcca gtcggagtcg cttgaataag ctctgttgtc ttatctttgg ttgataaact
     1261 attattagca atctgatcaa tatcgaaatt aaatcctgac atcttctcta ttcctcttct
     1321 cttttcatca tacgcagact gacttcaaaa tctttcatac ccgcttcgtt aaattgtttg
     1381 atggtatcat ccaaatcctt atcaaacatt tccatggctg attttgcctg caccaatcgt
     1441 tcttctgcgt taaaataatc tttcggtgat tttttgattt tcaaataacc ttgtaaaata
     1501 tcgttaaacc gattcatatt ggcctcatgg atagctgtca attcttccct cttatctgtc
     1561 gccttttcca gcttttcaag aataacaaga ttgtctcttt gaatattaca ataggtttct
     1621 agaatttcag gagctaaatc cgctatcatg ccttgttcat ccatcacagc attaccacca
     1681 gtagaaacct gtgtgtcagt atttttttct gttttagctt ctggcagttt taaatgatat
     1741 tttagttgca aggtatctac aacttcttta ctttcatatc cattcagata ttttccaact
     1801 ttttgataga gctgatctaa ttcaaataat tgtcctaaca gtctatttct caactgtaac
     1861 acaaccttat cctcaccctt ttccacaaag agctcttgat gcttttcata gcccgaacga
     1921 atagatagcg ctaatacctg cgagcgtttt atagaatctc tattcaaaaa acgctggata
     1981 gcctctctct tgtaaaaata gccaattaag agcccagtag gcaataagat ataccagaaa
     2041 ctcatgacaa aaccgattgc caataaaaca aggagggcca caagtcctga attattttta
     2101 ccatatttct tatacttttt atatttgtgc cccatagagc ctcctcatac gtgatatact
     2161 ttattatatc acattcccct aaaatactag aatgatagct aaagaaaaaa accgagaaat
     2221 ctcggttttt aaatattttt agcaacagtc ggaaccaagc tatccacttg gatacctgca
     2281 ccttcgaaaa gagttcgaac ttcttcaaca tcaacttttc cgtcaatctg cacttcgatg
     2341 acaacttttc cagacttggt agcaagttgc acagtagata caatattata atccttatct
     2401 gccaccaatc gaataatttt ttctaactcc cctgccttat tttcaacaag gaaccgagcg
     2461 cgtactcctt cttctccata acctgagaca tgaagaaaag ctgcaaaaat atcacgatca
     2521 gtaatgaccc catatagttg gccgttgtca acaactggaa gaatccccac tttgttttta
     2581 tacatgagat aagcagcatc ttcaagacta gcataacctg agactgtgat aacattctta
     2641 atcatcacat ccttgacctt agtcttattc aaaaggtagt tcatctcgta aatagatagg
     2701 ctagttgcct tcgatggact agcttctgcg attgttccct cagtgaccaa accaaccaac
     2761 ttatcatttt caataacagg tagacggtgc aaatcctgtt cacgcataat atctgcagcg
     2821 tgtgcaatgg ttgtatctgg tgaaatataa acaactttac gggtcataaa atctttaaca
     2881 gacataggac ttcctccttt ggtaaatcat actttattat accacaaatc cgaaaacgat
     2941 ttcaatattt aatgaaaaga aatgaaaatc aattcttaaa ttcaaaatat agactatttg
     3001 aaatacaatg gaatgagcaa gactgctgac tgagatagcc caaatctgct acaatcacag
     3061 attgttagca tctttccaat aaggcagcaa cctctttgaa gtcgttaaca gaagctggcg
     3121 tagtaacata gtgcagaata tagccagata aggtagcgag cacgtaaact ttgaaactac
     3181 agaaccatat ctatcatttt acctcctcac cgtttcaatc ctccactccc tccaacctcg
     3241 aaagcgaatg gctccttgct ggtcggtacg atagacttgg atattccgac tatcaaatcg
     3301 ttccaaggtt tcttgatggg gatgcttgta gcggttattt tctcctgctg ataccagggc
     3361 aatcttggct ccgatatggt ctagaaattc aggataggaa gaacctttgg agccgtggtg
     3421 accagcttta aggacatcga caggcaggtt gggataggct tctatcaagt ccaactcccc
     3481 ttgctccaaa tctcctgtaa agagaaagtt agtttccagc aagcgaccgt aaagaacaac
     3541 agagtcatta ttgccaccgt cgcctgtccc gtctggatag aggacttcca gatagaagtc
     3601 aaaaatcggc aagcggtcgc ctaccgccac cacatgaaca gggacattga tttctttcaa
     3661 agtcgctaca aagtcaggca ccgtcagact tcccggcgac acgtaaattc gaccaatttg
     3721 tacctgctta gccacttcta gcacatcgcc cacatggtct gtgtcggtgt gggtcagcac
     3781 tagactatca atcctatcca cgccccgact gtgcagatag ggaatcaaag tccgctctgc
     3841 atttgcctgc gaagaccgct cctgccactc ctccttagcc gcaaaatcaa cccgaccacc
     3901 cacatcaatc agaaccgtcc gcccccgcat atcccgcaaa aagatgctgt ccccctgccc
     3961 gatgtccacc accgtcacct cgttttccag cgggtgtttg gttatgaaaa atagcagagc
     4021 aaggaccatg ctcagtccta agagccattt ctttttcctg tggaaatcat agagcaagaa
     4081 aaggctgacc agcaaaagaa caagaattac cccagacggc ttgcccaata tccaaggccg
     4141 aaagcccaaa tccgctaccc agacaatgat tttttccatc aagacaaaaa atccgttgac
     4201 ccaggtaatc ttgaccaagg tcgatagaag aaaaatgacc gacaatcctg gcaaaagcag
     4261 aacatcaaag acaaaggaaa agacaaaggt caagaggata gacaaaggct gaaaggcata
     4321 gaaataggtc ataagcaccg gcaaaattcc cagtgaaata ctgaggctct ccaccgcagc
     4381 ctttttgacc tgccccaagt cctcaaaatc aaaaaccgtc agcaagaaag cataggtaaa
     4441 ggtcaatata cctcctgctg tcagtaaaaa tcggggcaga atcagcagac agacaaaaac
     4501 tgtcaccgca aagttatcca acttccgcaa gcccagattg cccaatattt tctgaaccaa
     4561 agaccgcacc actgacacag aaaaacctgt caaaccagca tagacaagag aaaagggaat
     4621 ttgtaattta tccacagttt ccttggtcag acccacacgc aacaaaatcc aacgaaattt
     4681 gtcgatgaaa aatccaacct gcatgccaga cagggcaaag agatgaatga tacccagact
     4741 agaatagagg tcactcatct ggtcaaactc actatccaac tccccaaaca agagccctgt
     4801 catgtagtgg ctcatgggtg ctggaaaatt ggttttgata tagaccaagg cctgcctccg
     4861 ccagcttgat agcaagtcaa aaacattcca agactggata gggacaatct tcttaatcgc
     4921 agaaatctta actgtccgat aaattccctg cgttttcaga taggcttggt agtcaaagcc
     4981 gttgaaattc cgctgaccag ctggcaggct gacctctgct tccacttcaa gctggaccaa
     5041 atctgttagc tcttgaaaat aagtctgctc ctcctgactg gctaatttgt agaaaacctg
     5101 ataggtttgt ccgtcagacc gaccacgaaa agacaggctg tccccgttga cttcaatcgt
     5161 atctggaatg acctgcacag tcgtcacttg ctctggggct gactggtctg cccgctccca
     5221 ttggaccttt tggtagccga aaaacaagcc acatagagct aaaagcagca gcgttttgag
     5281 gaaaaccgtc ttaccttgcc gaacaccaaa gacagctaac accaaactga gtaggcccat
     5341 tgtcaacagg gaaaaagagt ggactgcaaa gtaggccgcc accgccaaga ctgccagatg
     5401 gatgggctgg caggggagct taatcgaccg tgacataagg ccgaatgctt tccatggtct
     5461 tgtcgccgat gcccgaaaca ttgttgaggt catccaccga cttgaagcca ccgttggcct
     5521 cacgataggc gataatgtcc gccgcccgct tggcaccgat acccgaaatg gtctgcaggt
     5581 cagcctcagt cgccgtattc agattgacca gactggtgct tttttcttct tgggacatag
     5641 cagagctggc agtcgtgctg gcaaccaccg agatattttc atccttgctg gccacataga
     5701 ccaccgcttc gtcgctgagc ttctgagcca gattgataga cttggggtct gcctgactgg
     5761 tcaagccgcc agctgcttca actgcatcat taacacgcgc atcagcttct aaagtgtaga
     5821 gtcctggttt tactactgct cctttgatat caatgaccag ctggataggc tcttcacttg
     5881 cttctgtact ggtttcctcc gtctgctcct gaccgcttga agtttgttcg gtctggggaa
     5941 aatcagtcag acccgtctgg tcagacttgg ctggttgact gaagattaaa aatgtcgcca
     6001 ttagcaagcc agccactgcg ggcagagcaa tttgccactt gtattcttta agcatttcta
     6061 tataagtttt aatcgtatcc ataaattacc tccacctata tagttcgtaa aaaatacaaa
     6121 aaacccgcaa gctgcgagtt tcatttactt attttttatc caactgagta cttggttgcc
     6181 agaagaagct ggcgatatag ctaaaggaat aggtcaatcc caagataaga gcaaccagca
     6241 aaagaactgg gatacggtag atataggtca agatatttgg ttttttcttg gtttggaaag
     6301 atgccgcatg gtcatctaag cgtttgaact cagcctcaat tcggctagtt acttctgctg
     6361 tacctgcatc atccatacgc ttgatgtccg aaacatcgat aggatttcca aaagccacat
     6421 caattcgctc accagctaag agccctttga tagtcatagg acccacatag gtagctggca
     6481 tgagtttgac ctttgctgac ttggcaatga ccgccacacc accttttagc tcagatgaat
     6541 gacgacttcc agatggaaac atgaccagcg aacggtcact ctttttcaac atgttaactg
     6601 gatacttgat ggctgccatg ccaggattgt cacggtcaat tggaaaggct ccacattttg
     6661 aaatccacca gccaaaaccg cggtccttga agagttcttt tttagccata aagatgaact
     6721 gcttgggagc agctgcgtag ccaagaaaga ctggatccca gaaggtttta tgcggagcga
     6781 tgaggatata attttcctcc tgtggcaaga tcttttccct atcatgatag tgaatattgc
     6841 cattgatggc ccacaacaag aatgttaata atgttcgtag ataagaataa aacataaact
     6901 tctccttttt caatcccccc tattatagca caaatttgct tcaggacgaa atgtcatatt
     6961 cattcaaatt tacggtcaaa atacccacta tttacatagc cccgacttgt aaaaaccact
     7021 agataggttt acaatagaaa catgataaaa attgaacgtg tagtagacat tttaaaagcg
     7081 gatgctaact tccgccatat caaacagaat gaccagactg acagcacatg gacagatgtc
     7141 caatttgacg ctctcagtta tgacagccgg actgttagcc catcgaccct cttttttgcc
     7201 aagggtttgg cctttaagaa ggaatttctg gaaaaggcta tcgaggctgg gctggctttt
     7261 tacgtgtctg aaatcgacta cgaagtcagc attcctgcta tcatcgtcca tgacatcaag
     7321 caagccatga gcctgattgc catggagttt catggtcatc cccagaaaca gctcaaactc
     7381 ctagccttca ccggcaccaa gggtaagaca acggcggctt attttgcttt taacattctc
     7441 aaacagagcc acaagcctgc catgctttcg accatgaaca ccacactgga cggtaagacc
     7501 ttcttcaagt ctaccctgac cacgcctgaa agcctggacc tctttgccat gatggcggag
     7561 gcggtcaaaa acggcatgag ccacttaatt atggaggtgt ccagccaggc ctatctggtc
     7621 aagcgggttt acgggctgac ctttgatgtc ggcgtcttcc tcaacatcag ccccgaccac
     7681 atcggcccca ttgagcatcc gacctttgag gactacttct accataagcg gcggttgatg
     7741 gacaatagca gagcggttat tgtcaatgct ggaatggacc attttgaagt cgtgaaagag
     7801 caagtcagct ccaaagacca tgacttttat gggccgactt ctgaaaacca gattagtcag
     7861 tcagcaggtt ttgacttcac agcgactggc aaattggctg gccattacga catccagctg
     7921 atcggtggct tcaaccaaga aaatgccatc gcagcaggac tggcctgtct ccgtttggga
     7981 gcaagtctgg aagatattca cacagggatt gcccaaacca atgttcctgg ccgtatggaa
     8041 gtcctgaccc agcaaaacgg ggccaaggtt tttgtcgatt acgcccacaa cggcgatagt
     8101 gtcaagaagc tgattgatgt cgtcttagag caccagactg gcaaggtgtt tttgattttg
     8161 ggtgctcctg gtaacaaagg agaaagtcgc cgcaaggact tcggactgct gctcaacgac
     8221 tatccgcaga ttgaggtcat tctgacagct gatgatccca accgtgaaga tccagctgct
     8281 attgctgaac aaatccgtgc ccacatgacc cgtccaagca actttatctt ggaccgggaa
     8341 gaagccattc gcacagccat gagtcagacg acttcttctc aagatgctgt cattatcgct
     8401 ggaaagggag ctgatgccta ccagattgtc aacggcgaaa aggccgccta tgacggtgat
     8461 ttggaagtag caaaacaata tttgtaatat acgga
//
LOCUS       DASFRC010000093         8444 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.093, whole genome shotgun sequence.
ACCESSION   DASFRC010000093 DASFRC010000000
VERSION     DASFRC010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8444)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8444)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8444
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.093"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..1751
                     /locus_tag="U1087_001462"
     CDS             <1..1751
                     /locus_tag="U1087_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEM4755931.1"
                     /translation="LASFPNPEFYLKQATRQPTYQTPERIYLFEETNEALHLPRGILA
                     KLQEIFEMVTIRDNRNSLSPIQISFKGRLRFEQELALADLLASENGLLCAETGFGKTV
                     LGAALIAQRKCRTIILVHNRQLLEQWLERLGEFLEIEEEEAVRYTPSGRVKVIGHIGQ
                     YGASKKWRSKLVDVVMIQSLFQLDAISDFLSDYDMMIVDECHHVTALQFEKVVAQFAG
                     QYLYGLTATPERKNGHQPIVFQRIGPILHTAQSGQYDFKKRLPLHLTSFGKLDLEQSN
                     STNFASLNDWLAKDLHRNTLIVQDIFKLYQEKRNILVLVNRREHIELLEKLLIEKEMP
                     NIFCLSGASKRRDTKELLKKISELDKNSPFVLISTGKYIGEGFDMPKLDTLILAAPLS
                     WKNNLIQYAGRLHRPYQGKTEVRIVDYLDIHVPYLERMYQKRQIAYRKMAYQVGEKEQ
                     TQVFYSGRNYEEKFREDLLNTRSTVSLQLHSFTSSRIQELLGLLRGKQVVIHASKNHK
                     LSEWITGVNSDNVKVKLVPERVSTTIILLDKSIVWYGNLSPFVYHSDDQASLLRLESQ
                     SIAEELLEKFENSNIK"
     gene            1866..2588
                     /locus_tag="U1087_001463"
     CDS             1866..2588
                     /locus_tag="U1087_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755932.1"
                     /translation="MEKEVFTPDQSQSIVDAILKGYKSYLDERIEKRRTMHVSAGYAW
                     TKANHIDDALATANLNFIDKFELKHAGQSWEFLEFNSENQLLGRVCFVLKGLTRLRQV
                     FPTAVKSGKGYLFDYAQINTSYLENLSRNTDESTLFPVQMELFDDNLFELLNRSEQSI
                     NNFFFITYQADELHHLTNIQVIMPDSRTGKLIEIQNLSTFISTSNVDFNDEKYQKLQG
                     LSEIDDVADFEIIPRLASEKEA"
     gene            2602..3756
                     /locus_tag="U1087_001464"
     CDS             2602..3756
                     /locus_tag="U1087_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HEM4755933.1"
                     /translation="MFNGSRLEELRLLNGLTRADLARELEVTEQAIWQFETGVTLPKM
                     KNKIAMARFFQVEVDYFDAVDKNGSFSLSRIAFRNADLEAKKNIHIQMVYLEKMNQMI
                     DYLENFVSIPNQIIYQLVDSIEQKLQQHESLEFIADHAREVLVVSVDNANLLYSLEKS
                     GIYISERLINGNADAYSAWSRNGRPFIVLGPGKSAVRRNFDLAHELGHLLLHNQVDFE
                     ELSKEELEEKEKEANQFASYFLLPRKQFLMDFVNIVGKRVSNPDQYILLKKRFGVSIQ
                     ALEYRAYKLGLLTPQQNSYFYRQISKKGYKAVEPLDLEIPLKKPSKIRSILDVILSNN
                     LLTLSDIERNQRVSKNFISQLFSFDVKFFDKYLLQLDKFDNVIPLFSRKQ"
     gene            3771..4829
                     /locus_tag="U1087_001465"
     CDS             3771..4829
                     /locus_tag="U1087_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HEM4755934.1"
                     /translation="MNKINSYKIHLPSLIPFGFILSDNRYTYREVFMEGQFEAVVEVD
                     EAGQLSSYVWDCEMEEVYTAHLVTAPAGAFVGQLREAYQSILARVEEACCIALPFSKD
                     QSNRLAQLIKEQWGDLPDYPFAKLPTYGAFRHPNNNKWYALVSQIPRDKLDGSGSQEE
                     VEIVNLKVDGREIAELLSQSGLFPAYHMSKKSWVSVLLDDTVEDQTVFALLEKSRYLV
                     GPKSYKAAQGPDYWVIPANPKVYDIDTEFAENKVVYWAQKSTIQAGDIVAIYVTAPVQ
                     AIRYVCRVLGANLENHGESDIPTEKQLMQVELLAQFSDDVLPRARMMDLGVRAVRGPR
                     RLTEGVIEVLTSEVKNLH"
     gene            4914..5906
                     /locus_tag="U1087_001466"
     CDS             4914..5906
                     /locus_tag="U1087_001466"
                     /EC_number="6.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016502595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--ammonia ligase"
                     /protein_id="HEM4755935.1"
                     /translation="MKKSFIHQQEEISFVKNTFTQYLKDKLEIVEVQGPILSRVGDGM
                     QDNLSGVENAVTVNVKLIPDATYEVVHSLAKWKRHTLARFGFNEGEGLFVHMKALRPD
                     EDSLDPIHSVYVDQWDWEKVIPDGRRNLAYLKETVEQIYKAIRLTELAVEARYDIESV
                     LPKKITFIHTEDLVKNFPDLTPKERENVVAKEYGAVFLIGIGGELADGKPHDGRAPDY
                     DDWTSPSEAGYKGLNGDILVWNEALGSAFELSSMGIRVDEEALKRQVAITGDEDRLEF
                     DWHRALLNGLFPLSIGGGIGQSRLAMFLLRKKHIGEVQSSVWPQEVRDSFENIL"
     gene            6041..7888
                     /gene="typA"
                     /locus_tag="U1087_001467"
     CDS             6041..7888
                     /gene="typA"
                     /locus_tag="U1087_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HEM4755936.1"
                     /translation="MTKLREDIRNVAIIAHVDHGKTTLVDELLKQSQTLDERTQLDER
                     AMDSNDIEKERGITILAKNTAVAYNGTRINIMDTPGHADFGGEVERIMKMVDGVVLVV
                     DAYEGTMPQTRFVLKKALEQNLTPIVVVNKIDKPSARPEEVVDEVLELFIELGADDDQ
                     LEFPVVYASAINGTSSLSDNPDDQEETMAPIFDTIIEHIPAPVDNSDEPLQFQVSLLD
                     YNDFVGRIGIGRVFRGTVKVGDQVTLSKLDGTTKNFRVTKLFGFFGLERKEIQEAKAG
                     DLIAVSGMEDIFVGETVTPTDAVEALPVLRIDEPTLQMTFLVNNSPFAGREGKWVTSR
                     KIEERLLAELQTDVSLRVDPTNSPDKWTVSGRGELHLSILIETMRREGYELQVSRPEV
                     IIKEIDGVKMEPFERVQIDTPEEYQGSVIQSLSERKGDMLDMVSTGNGQTRLVFLVPA
                     RGLIGYSTEFLSMTRGYGIMNHTFDQYLPVVPGEIGGRHRGALVSIDQGKATTYSIMR
                     IEERGTIFVNPGTEVYEGMIIGENSRENDLTVNITTAKQMTNVRSATKDQTAVIKTPR
                     ILTLEESLEFLNDDEYMEVTPESIRLRKQVLNKAERDKAAKKKKLATEE"
     gene            7906..8154
                     /locus_tag="U1087_001468"
     CDS             7906..8154
                     /locus_tag="U1087_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3165 family protein"
                     /protein_id="HEM4755937.1"
                     /translation="MFYLILAIMLVLFYIFVAPRNIKGTMNLIAAVFLLVALAIALVL
                     GFLRIMQFPKEIWVGLLMILIGFWAMRDIYQLNDDTKF"
BASE COUNT         2555 a         1524 c         1891 g         2474 t
ORIGIN      
        1 agctggcatc ttttcctaac cctgaatttt atctaaaaca agcgaccaga caaccaacct
       61 atcagactcc agaacgcatc tatttatttg aagaaacaaa cgaagccttg catcttccaa
      121 gaggaatact tgctaagcta caggaaatct ttgaaatggt aactattagg gacaatcgca
      181 acagtttgtc tccgattcag atttctttca aagggaggtt gcgttttgag caggaacttg
      241 ctttggcaga tttattagct agtgagaatg gtttgctatg tgctgaaaca ggtttcggga
      301 agacagtttt aggggcagcc ttgattgccc agaggaaatg tagaacgatt atcttagttc
      361 acaatcgtca actgttggag cagtggttgg aaaggttggg tgaattttta gagattgaag
      421 aggaagaggc agttcgctat actccttcag ggcgtgtaaa agtaataggg catattgggc
      481 aatatggggc ttctaaaaaa tggaggagta aattggtgga tgtggttatg attcaatccc
      541 tcttccaatt ggacgctatt tccgactttt tgtcggacta cgatatgatg attgtggatg
      601 aatgccatca tgtgacagcc ttgcagtttg aaaaagtagt tgctcaattt gctggtcaat
      661 atctatatgg cttaacagca acgccagagc gtaaaaatgg acatcaaccg attgtctttc
      721 aacgcattgg tccaatttta catactgctc aatcaggtca atacgatttt aaaaagaggt
      781 taccactcca tctaacatct tttgggaaat tggacttgga acagtcgaat agtacgaact
      841 ttgcatccct taatgattgg cttgccaaag atttacatcg caatactttg atcgtgcaag
      901 atattttcaa actatatcaa gaaaaacgaa acatccttgt cttagtcaat cgacgggaac
      961 atatagaatt attggaaaag ctacttattg aaaaagaaat gcccaatata ttttgtctga
     1021 gtggagcgag taaaagaaga gatacgaaag aactcctgaa aaaaatcagt gagctagata
     1081 agaatagtcc ctttgtcctc atttcaacag gaaagtatat tggcgagggc ttcgatatgc
     1141 caaagttgga tacactaatt ttggcagctc ctttgtcttg gaaaaataat ctcatacagt
     1201 atgcagggcg gcttcaccgt ccctatcaag gcaaaactga ggtgagaata gtcgattatc
     1261 tagatataca cgttccttat cttgaaagaa tgtaccagaa acgtcagata gcctatcgaa
     1321 aaatggccta ccaagttgga gaaaaggagc aaacccaagt attttatagt ggtaggaatt
     1381 acgaggagaa atttagagaa gatttgctga acacacgttc aacagtctct ttacaattgc
     1441 attcgttcac ttctagtagg attcaagaat tattgggatt gctccgagga aaacaagtgg
     1501 ttattcatgc ctccaaaaac cataagttaa gcgagtggat aacgggggta aatagtgaca
     1561 atgtaaaggt gaagcttgta ccagaaaggg tcagcacaac gatcatccta ttagacaaaa
     1621 gtatcgtttg gtacggcaat ttatcgcctt ttgtttatca ttcggatgac caagccagtt
     1681 tgttgaggtt ggaaagtcaa tctattgctg aagaattgct tgaaaaattt gagaattcaa
     1741 atattaaata aaaaaatccg aatactgttc tgttcggata tttctttaaa aaaagaacta
     1801 tatttgtatt aaaatttaat attttgtata aaaatatgat aaaatattga gaaatggagg
     1861 tgcatatgga aaaagaagtg tttactcccg atcaaagtca atctattgta gatgctatac
     1921 tgaagggata caagtcctat cttgatgagc gaattgaaaa gagaagaaca atgcatgttt
     1981 ctgctggtta tgcttggact aaagctaatc atatagatga tgctcttgcg actgcaaacc
     2041 taaattttat tgataaattt gagttgaaac atgcgggtca atcttgggaa tttttagaat
     2101 ttaactcaga aaatcaacta ttaggacgtg tatgttttgt tttaaaaggt cttactcgct
     2161 tgcggcaggt ttttccaaca gcagtaaaaa gtggaaaggg ctatttattt gactatgctc
     2221 aaattaatac aagttaccta gaaaatcttt caaggaatac cgatgaaagt acgcttttcc
     2281 ctgttcagat ggagttgttt gatgacaatt tatttgaact tttgaatcgg tctgaacaat
     2341 ctatcaataa ctttttcttt atcacatatc aggctgatga attacatcac ttgaccaata
     2401 ttcaagttat catgcctgat tcaagaactg ggaaattgat tgaaattcaa aatttatcaa
     2461 catttatttc tacaagtaat gtcgatttta acgatgaaaa atatcaaaag ttacaaggct
     2521 tatcagagat tgatgatgta gctgattttg agattatacc acgtctcgct tcagaaaaag
     2581 aagcttagaa aggcaaaaaa aatgttcaat ggttcaagac tggaagaatt acgacttctg
     2641 aatggcctta cacgtgcaga tttggcaaga gagcttgaag tgaccgaaca ggctatatgg
     2701 caatttgaaa ctggagttac acttccaaaa atgaaaaata agatagcaat ggctcgtttt
     2761 tttcaggttg aagttgacta ttttgatgct gttgataaga atggttcatt ctcactaagt
     2821 cgcattgcct ttcggaatgc agaccttgag gcaaaaaaaa acatccatat ccaaatggta
     2881 tatttggaaa aaatgaatca aatgatagat tatttggaga actttgtatc cattcctaat
     2941 caaataattt accagttagt tgatagtatt gagcaaaaac ttcagcaaca tgaatcactt
     3001 gagtttattg ctgatcatgc tagagaggta ttggtagtat cagttgataa tgccaatctc
     3061 ctctatagtt tagaaaaatc tgggatatac atttcagaga gattaatcaa tggaaatgcg
     3121 gatgcctata gtgcttggtc acgtaatggt cgacctttta tcgttttggg acctggaaaa
     3181 tcagcggtac gacgtaattt tgatttagca catgaactag ggcatctact cttgcacaac
     3241 caagtagatt ttgaggaact gtcaaaagaa gaattagagg aaaaagagaa agaagccaat
     3301 caattcgcct cctatttcct gttacctagg aaacaatttt taatggattt tgtgaatatt
     3361 gtaggtaagc gtgtcagcaa tcctgatcaa tatatcttgt taaaaaaacg ttttggtgtc
     3421 tcaattcaag cgcttgaata tagagcctac aagcttggct tactgactcc acagcaaaat
     3481 tcttatttct atcggcagat ttcaaaaaaa ggatataaag cagttgagcc actagatttg
     3541 gaaattccct taaagaaacc aagtaaaatc agaagtatct tagatgtcat cctttcaaac
     3601 aatcttttaa ctctgtcaga tattgaacga aatcagaggg tgtcaaagaa ttttatcagt
     3661 caattatttt catttgatgt gaaatttttt gataagtatt tgcttcaatt agataagttt
     3721 gataatgtaa ttccattgtt ttctagaaaa caatgatggg gagtagagta atgaacaaaa
     3781 tcaattctta caaaatccac ctcccctctc tcatcccttt cggttttatc ctctccgaca
     3841 atcgttacac ctaccgtgag gtgttcatgg aggggcagtt tgaggcggtg gtggaggttg
     3901 atgaggctgg tcagctgtcg tcctatgtct gggattgtga gatggaggag gtctataccg
     3961 cccatctggt gactgcgcca gcaggggctt ttgtggggca gttgcgtgag gcttatcagt
     4021 ccattttggc tcgggtagag gaagcctgct gtatcgctct gccattttcc aaagaccaaa
     4081 gcaaccgtct agcccagctc atcaaggagc agtgggggga cctgcctgat tatccctttg
     4141 ccaagttgcc gacctatggg gcttttcgcc accccaacaa taataagtgg tatgccctgg
     4201 tcagtcagat tccgagggac aagctggatg ggagcggttc tcaagaagag gtggaaattg
     4261 tcaatctcaa ggttgacggt cgggaaatag cagagctgct gagtcagtcg ggcctcttcc
     4321 ctgcctacca tatgtcgaag aagagctggg tgtcggtctt gctggatgat acggtggagg
     4381 accagacggt gtttgccctc cttgagaaaa gtcgttattt ggtgggaccg aaatcctaca
     4441 aggcggcgca agggcctgat tactgggtta ttccagccaa tcccaaggtc tatgatatcg
     4501 ataccgaatt tgcggaaaat aaggtagtct attgggcaca aaaatcaacc attcaagccg
     4561 gggacatcgt agccatctat gttacagcgc cggtacaggc cattcgttat gtttgtcgtg
     4621 tcttaggagc gaatttagaa aatcacgggg aatcagacat tccgacagaa aagcaactca
     4681 tgcaggtgga attgcttgct cagttttccg atgatgtttt gccgagagcg cgcatgatgg
     4741 acttgggagt cagggcggta cgtggtccta gacgcttgac agagggcgtg atagaagtac
     4801 tgacatccga agtgaaaaac ctccattaaa ttatcagaat atttaataaa aagactttac
     4861 aagtgggtaa aaaagagtat aataaggtgt ataaatttac gaggaggtaa ggtatgaaga
     4921 aaagcttcat tcatcagcaa gaggagattt ctttcgtcaa aaatacattc actcagtatt
     4981 tgaaagacaa gttagaaatc gtagaagtgc aaggaccgat tttgagtcgt gtcggggatg
     5041 gtatgcagga taatttgtcc ggtgtggaga atgcggttac tgttaatgtg aagttaattc
     5101 cagatgcgac ctatgaagtg gttcactcac ttgctaagtg gaagcgtcat accttggctc
     5161 gattcggttt taatgaggga gaagggctct ttgttcacat gaaggctctt cgtcctgacg
     5221 aggattcctt ggatcccatt cactcggtgt atgtggatca gtgggactgg gaaaaggtta
     5281 ttcctgatgg tcgtcggaat ttagcttact tgaaggaaac ggtagagcag atttacaagg
     5341 ctatccgtct gaccgaattg gcagttgaag ctcgttatga cattgagtct gttttgccta
     5401 agaaaatcac ctttatccac acagaggacc tggtcaagaa cttcccagac ttgacaccaa
     5461 aagagcgtga gaatgtggtt gccaaagaat acggtgcagt tttcctaatt ggtatcggcg
     5521 gtgaactggc agatggaaaa ccacatgatg gacgtgcacc agactatgat gactggacaa
     5581 gcccatctga agcaggctac aaaggactca atggggacat cttggtttgg aacgaagcac
     5641 ttggttcagc ctttgagttg tcctcaatgg ggattcgtgt ggatgaagaa gcgctgaagc
     5701 gccaggttgc tattacaggt gacgaggacc gtttggaatt tgattggcat cgtgcccttt
     5761 tgaatggtct cttcccgctt tcaatcggtg gcggtatcgg tcaatcccgt ttggccatgt
     5821 tcttgcttcg taagaaacat atcggtgaag ttcaatctag cgtatggcca caggaagtgc
     5881 gagatagttt tgaaaatatt ttgtaagagg ttgattttca atctcttttc tttttcttct
     5941 caatcaactg cctgaaaaca tttacaacaa gattatctgt gatttttgcg ccaaactgtg
     6001 atatactttt ttagttaaat taaaatatac agaggatatt atgacaaaac ttagagaaga
     6061 catccgtaac gttgctatta ttgcccacgt tgaccacgga aaaacaaccc tcgttgatga
     6121 attattaaaa caatcccaaa cattggatga gcgtacgcaa ttggatgagc gtgccatgga
     6181 ctcaaatgat attgagaaag agcgtggtat caccatcctt gcaaaaaata ctgccgtagc
     6241 ttataacggt actcgtatca acatcatgga cacaccggga cacgcggact tcggtggtga
     6301 ggttgagcgg atcatgaaaa tggttgatgg tgtagtcctt gtcgtggatg cttatgaagg
     6361 aaccatgcca cagactcgtt tcgtattgaa aaaagcgctt gaacaaaact tgacacctat
     6421 cgtggttgtg aataagattg acaaaccatc tgctcgtcct gaagaagtag tggatgaagt
     6481 gcttgaactc ttcatcgaac ttggggcaga cgacgatcaa ttggaattcc cagttgtcta
     6541 tgcgtcagcg attaatggta cttcttcatt gtctgacaat ccagatgacc aagaagaaac
     6601 aatggcacca atctttgata ccatcatcga gcatatccca gctccagttg acaactcaga
     6661 tgagccattg cagttccaag tttcactttt ggactacaat gacttcgtag gtcgtatcgg
     6721 tatcggtcgt gtcttccgtg gtacagttaa agttggtgac caagttaccc tttctaaact
     6781 agatggcaca acgaaaaact tccgcgttac aaaactcttt ggtttcttcg gtcttgagcg
     6841 taaagaaatc caagaagcta aagcgggtga cttgattgcc gtttctggta tggaagacat
     6901 cttcgtaggt gagacagtaa caccgacaga tgcagttgag gcacttccag ttcttcgtat
     6961 cgatgagcct actcttcaaa tgactttctt ggtgaacaac tcaccatttg caggtcgtga
     7021 agggaaatgg gtaacttctc gtaagattga agagcgtctc ttggctgaat tgcaaacaga
     7081 cgtatctctt cgtgtagatc caaccaattc accagataaa tggactgttt caggtcgtgg
     7141 tgaattgcac ttgtctatct tgattgaaac catgcgtcgt gaaggctatg agcttcaagt
     7201 atcacgtcca gaagttatca tcaaggaaat cgacggcgtg aaaatggagc catttgagcg
     7261 cgtgcaaatc gatactcctg aagaatacca aggttctgtt atccaatccc tatctgagcg
     7321 taagggtgat atgttggata tggtttcaac tggtaatggc caaactcgtc ttgttttcct
     7381 tgtgcctgcg cgtggtttga ttggttattc tacagaattc ctttcaatga ctcgtggtta
     7441 tggtatcatg aaccatactt tcgaccaata cttgccagtt gttcctggtg aaattggtgg
     7501 tcgtcaccgt ggtgcccttg tctctatcga ccaaggtaag gcaacgactt actctatcat
     7561 gcgtatcgaa gaacgtggta ccatctttgt caacccaggt actgaagtat acgagggaat
     7621 gatcatcggt gaaaactctc gtgaaaatga tttgactgtt aatatcacga ccgctaaaca
     7681 aatgaccaac gttcgttcag cgacgaaaga tcaaacagcg gttattaaga caccacgtat
     7741 cttgactctt gaagaatcac ttgaattctt gaatgatgac gagtacatgg aagtcacacc
     7801 agaatccatt cgtcttcgta agcaagtctt gaacaaggca gagcgtgata aggctgctaa
     7861 aaagaaaaaa ttagcaactg aggaataatt tctaggagaa gaagcatgtt ttatttaatc
     7921 ctcgccatca tgttagtact tttttatata tttgtggcac ctcgcaatat taaggggact
     7981 atgaatttga ttgcggcagt atttttactg gtagcattag cgattgcctt ggtacttgga
     8041 tttttaagaa tcatgcaatt tccaaaggaa atttgggttg gtctactaat gattctgatt
     8101 ggtttttggg cgatgcggga tatttatcaa ttaaatgacg atacaaaatt ttagcagagt
     8161 ctttgatttt tgaataccgt aatacgatat tactaaggaa ttttatccag ctttttggac
     8221 agtagtggca atctattagc taaagaaatt atattctgtg atacatcttg aagaagctct
     8281 cgttatttat aataaatgac aagcgcattt tcaaggtgtt tttatgtaga taaattttaa
     8341 tactcaatga aatccccaaa atagcaagtt cttagtacag tcatttaaat taactctgat
     8401 acatcgccgc tttcggcttg ccgtactcta cgaaagtgac tcgt
//
LOCUS       DASFRC010000094         8389 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.094, whole genome shotgun sequence.
ACCESSION   DASFRC010000094 DASFRC010000000
VERSION     DASFRC010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8389)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8389)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8389
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.094"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            82..552
                     /locus_tag="U1087_001469"
     CDS             82..552
                     /locus_tag="U1087_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HEM4755938.1"
                     /translation="MKLQNLQVGQSYLVKDCLTQDDIRKHLAHLGLKVGEEIRIISKT
                     KTNAIFQVKASRLALDREIIESLVLIEKSATEIINLSEAPIGSSAKVMDIYATGALRR
                     RLMDMGLTKNIQLFLKKVAPLGDPIEITLRGYELTLRKSEAQMIGVQITSEVGK"
     gene            549..2693
                     /gene="feoB"
                     /locus_tag="U1087_001470"
     CDS             549..2693
                     /gene="feoB"
                     /locus_tag="U1087_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HEM4755939.1"
                     /translation="MTKHIALAGNPNSGKTTLFNLLTGTNQRVGNWPGVTVERKSGTI
                     KKRKHLLIQDLPGIYSLSPYTPEERVARDYLIADQPAAILNVLDATNLERNLYLTLQL
                     LEMGLPIVIALNMTDALKSQGRSINSDQLSYQLGVPVQPISALKKLGISQLLHEVEKI
                     TNQQAEPIYPQYDKQFEAGLAQVIDLLSDSIPNHQKRFYAIKLLEQDQVILDQLQLNA
                     QDMLDLTEIIAILEKIYADDMEAIIVNQRYQFIEKITELVTKDSDKAFNLSDNIDRLV
                     TNRFLALPIFAAVMWLTYFLSIQTVGTMGTDWVNDVLFGELVPGLIQANLDRFEIAGW
                     LQSLVLDGIIAGCGAILGFVPQIFVLFVCLGILEDIGYMSRVAFVMDRIFRRFGLSGK
                     SFIPMLISTGCGVPGVMASRTIENEQDRKITIMTATFMPCSAKLPIISLVASAFFPDN
                     PWIAPSAYFVGMAAIVLSGMALKKTKQLGGVASPFIMELPSYHLPKLSTVLRYAFDKA
                     LSFIKRAGTIIFVTNIIIWFSSSYNWSLQMVETDESILASIGHSFSLLFAPLGFGNWR
                     ATVAAITGLLAKETVIATFGILYKLGETTEENPELWGLLQQDYTALSAYSFLVFNLLC
                     APCFAAIGAIHREMGEAKWTWIAIGFQTGLAYASSLVIYQVGLVLIYGQLPTVWTFIA
                     IFLIITAIYSLVKKPANTLPIVTLKTLEKGEY"
     gene            2693..2845
                     /locus_tag="U1087_001471"
     CDS             2693..2845
                     /locus_tag="U1087_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FeoB-associated Cys-rich membrane protein"
                     /protein_id="HEM4755940.1"
                     /translation="MPTLILFLIIVILFSLAIRSLINGKGSCGDCSCDCTIKQEMNES
                     SHHRHP"
     gene            complement(2898..3827)
                     /locus_tag="U1087_001472"
     CDS             complement(2898..3827)
                     /locus_tag="U1087_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM4755941.1"
                     /translation="MSNRFFRHFIESLKSLKRNGWMTIAAISSVAITLTLVGLFASVI
                     LNTAKLASDLEQNVRINVYLRANSTDQAETIVNEAGETVANPDYLKVYNQITALENVQ
                     SVTYSSKDEQLQKLTATLGETWNLFQGDANPLYDAYIIDTTDPNYVKSVAAEIAKIDG
                     VTEVRDGEVETERIFKLADLVRTWGLAATGLLLFTAVFLISNTIRITIISRSREIQIM
                     RLVGAKNSYIRGPFLWEGAWVGFLGAILPSVLVYSLYKMIYTSVNASLASQDLSLISM
                     NVFVPGMIGALFVIGIIIGSLGSVISMNRYLKI"
     gene            complement(3820..4512)
                     /gene="ftsE"
                     /locus_tag="U1087_001473"
     CDS             complement(3820..4512)
                     /gene="ftsE"
                     /locus_tag="U1087_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012130521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HEM4755942.1"
                     /translation="MGIIEMKDVSKKYGNGTTALRGVSVNVEAGEFTYIVGPSGAGKS
                     TFIKLLYREEKLDKGSLKVGKFDLAKIKKRDVPLLRRSVGVVFQDYKLLPKKTVFENI
                     AYAMEVIGEKPRNIKKRVMEVLDLVGLKHKIRSFPNELSGGEQQRIAIARAIVNNPKV
                     LIADEPTGNLDPENSWEIMNLLERINLQGTTILMATHNSQIVNTLRHRVIAIEDGRVV
                     RDEAEGEYGYDE"
     gene            complement(4654..5749)
                     /gene="prfB"
                     /locus_tag="U1087_001474"
     CDS             complement(join(4654..5676,5678..5749))
                     /gene="prfB"
                     /locus_tag="U1087_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775232.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HEM4755943.1"
                     /translation="MDTAEIRQKIEELGKKLTSFRGSLDLEGLEEEIAILENKMTEPD
                     FWNDNLAAQKTSQELNELKNTYGNFHQMLDLYDESEILLDFLAEDESVRDELVEKLAE
                     LDKTMTAYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGEMLLRMYQRYGNAKGFTV
                     ETLDYQAGDEAGIKSVTLSFTGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFTSVE
                     VMPELDDTIEIEIRDDEVKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVTQSTVDRT
                     QYGNRDRAMKLLQAKLYQLEQEKKAAEVDSLKGDKKEITWGSQIRSYVFTPYTMVKDH
                     RTGYEVAQVDKVMDGDLDGFIDAYLKWRIS"
     gene            complement(5784..6911)
                     /gene="queG"
                     /locus_tag="U1087_001475"
     CDS             complement(5784..6911)
                     /gene="queG"
                     /locus_tag="U1087_001475"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HEM4755944.1"
                     /translation="MNIKEEIIKLSQEIGISKIGFTTADDFAYLEKSLRASQEEGRSS
                     GFEHKNIEERIRPKLSLESAKTIISIAVAYPRHLPVKPQKTQYKRGKITPSSWGLDYH
                     YILQDKMERLARGIERLTDGLEYKAMVDTGALVDTAVARRAGIGFIGKNGLVISKEFG
                     SYMFLGELVTNLDIEPDQPVDYDCGDCNRCVAACPTSCLLGDTTMNARRCLSFQTQDK
                     GMMDLEFRKKIKTVIYGCDICQICCPYNKGISSPPVVEIDPELAEPELIPFLDLSNGQ
                     FKEKFGMIAGSWRGKNILQRNAIIALANNNDRSAIPKLLEIIDKKQNPVHMATAIWAL
                     GQLVKHPNDEMVSFIAGISSDNDDVIAEQMAFLNMVKDLQM"
     gene            complement(6952..7440)
                     /locus_tag="U1087_001476"
     CDS             complement(6952..7440)
                     /locus_tag="U1087_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HEM4755945.1"
                     /translation="MQTKKMSMFLFFAYLLLLTWMIVFKMDLSIVYGRYGYASINLIP
                     FAGTAVYDGVLDFPEILFNIVSFIPFGIYMEMLFRKASWVANLCLIMLVSLCFEVLQY
                     LLLLGVADITDLLANGLGGAIGINIMYVLTSIWREKAYVRMNIFCFVLTFFVILITYL
                     AM"
     gene            complement(7609..8025)
                     /locus_tag="U1087_001477"
     CDS             complement(7609..8025)
                     /locus_tag="U1087_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="HEM4755946.1"
                     /translation="MNYLQNYILSKSSYLPSDKLFILQKELEDLDDEALNVLMMVEMR
                     QPLVALILAIFFGEFGVDRFYVGNKELGFAKLIAFAVSFVTLFILIGFLLFLGLYLWK
                     FIDCFLIMRACKEANFERLMLQIHQYKAFQHSNQTF"
     gene            8159..>8389
                     /locus_tag="U1087_001478"
     CDS             8159..>8389
                     /locus_tag="U1087_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755947.1"
                     /translation="MRVIIHYPKPTKQLSSQKLPLLVDGKIAGTVTQGKILSLPITQP
                     SVTLSIRGDKKSSIQVKEGDRVQIVENSKYFIL"
BASE COUNT         2594 a         1958 c         1446 g         2391 t
ORIGIN      
        1 aataagccat tcctaaaaat tgtctgacac ttttaaggaa ttgtgctata ctattgttat
       61 aaaaatcaca aaggaaacga tatgaaactg caaaaccttc aagttggaca atcttattta
      121 gtcaaagatt gtctaacgca agatgatatt cgtaaacact tagcacactt gggtttaaaa
      181 gtcggagaag agattcgcat catttcaaaa accaagacca atgctatttt ccaagtcaag
      241 gcaagccgtc tagccctaga cagagaaatt atcgaatctc tggttttaat agaaaagtca
      301 gctacggaaa taatcaatct atccgaggca cctattggta gctcagctaa ggtcatggat
      361 atctatgcaa caggtgcact ccgtcgtcgc ctcatggata tgggacttac aaagaacata
      421 cagctatttc tcaaaaaagt cgctcccctg ggcgatccaa tcgaaattac cttgagagga
      481 tacgagctga cactacgcaa atccgaagcg caaatgattg gtgttcaaat cacaagcgag
      541 gtggggaaat gacaaaacac atcgcccttg caggaaatcc aaatagcgga aaaacaactc
      601 ttttcaacct cctaacagga accaaccaac gtgtcggtaa ctggcctgga gtcaccgttg
      661 aaagaaaatc tggaacgatc aaaaagcgaa aacatttact aattcaagat ttaccaggta
      721 tctactcgct gtctccctac acaccagaag aacgggttgc cagagattat ttgatagcgg
      781 accaaccagc tgctatcctc aacgtccttg atgcaacaaa cttggagcgg aatctctatc
      841 tgaccttgca gttattagaa atgggcctcc ctattgttat cgccctcaat atgacagacg
      901 ccctgaaaag tcaaggtcgc tcaataaaca gcgaccaact ctcctatcaa ctgggagttc
      961 ctgtacagcc tatcagtgca ctaaaaaagc taggtatatc ccagctcctc catgaagtag
     1021 aaaaaattac caatcaacaa gctgagccaa tctatcctca gtatgacaaa caatttgaag
     1081 ccggtctcgc ccaagttatt gacctattat cggattccat cccaaatcat caaaaacgct
     1141 tctacgccat taagctactc gaacaagacc aagtcattct agaccaattg caactaaatg
     1201 cacaagacat gcttgatttg accgaaatca ttgccatttt ggaaaaaatt tacgcagacg
     1261 atatggaagc cattatcgtc aatcaacgct accaatttat cgagaaaatc acagaactgg
     1321 tcacaaaaga cagcgataag gcttttaacc tgtctgataa catagaccga cttgttacca
     1381 atcgttttct tgccctccct atctttgcgg cagtcatgtg gctgacctac ttcctgtcta
     1441 ttcaaacggt aggtacaatg gggactgact gggtgaatga tgtcctcttc ggagagcttg
     1501 ttccaggcct tattcaggca aatctagatc gatttgaaat cgctggctgg ctacaatctc
     1561 tggtccttga tggcattatt gcaggatgcg gagccattct aggttttgta ccacaaattt
     1621 tcgtcctctt cgtctgcttg ggaatcttgg aagacatcgg ctatatgagc cgagtcgcct
     1681 ttgtcatgga taggattttt agacgttttg gtctatcagg caaatccttt attcccatgt
     1741 tgatttccac aggctgtggc gttcctggag tcatggcaag ccggactatt gaaaatgaac
     1801 aggaccgaaa aatcaccatt atgacagcaa ccttcatgcc ctgttctgcc aaacttccta
     1861 tcatttcact ggtagccagt gctttctttc ctgacaatcc ttggattgct ccaagcgcct
     1921 attttgtcgg tatggctgcc atcgtcctat ccggaatggc actaaaaaag accaagcaac
     1981 ttggtggagt cgcaagcccc tttatcatgg aattaccatc ttatcactta ccaaaactca
     2041 gtacggttct ccggtatgca ttcgataagg cacttagttt tatcaaacga gctggtacca
     2101 ttatatttgt gaccaacatc attatttggt tcagcagttc ctataattgg tctttacaaa
     2161 tggtagaaac agatgagagt atcttagcct ccattggaca cagtttttct ctcctctttg
     2221 ccccacttgg tttcggaaat tggcgagcaa ctgttgcagc cattacaggt ctcttagcca
     2281 aggaaaccgt cattgccacc tttggtatcc tctataaatt aggagaaaca accgaagaaa
     2341 atcccgaact ctgggggctt ttacaacaag actatacagc gttatcagcc tactccttcc
     2401 tagtcttcaa tctcctctgt gcaccttgtt ttgcagctat tggtgccatt caccgtgaaa
     2461 tgggagaagc caagtggaca tggattgcta tcggtttcca aacaggttta gcctatgcaa
     2521 gtagtttggt tatctatcag gttggtcttg tacttatcta cggacaatta ccaaccgtct
     2581 ggacatttat cgctatcttt ctaattatca cagccatcta cagcctagtg aaaaaaccag
     2641 ccaatactct tccaatcgtc acgctaaaaa cattagaaaa aggagaatat taatgcccac
     2701 acttatcctc tttctcatca tcgtcatctt attttctctt gcgattcgca gtctcatcaa
     2761 tggaaaagga tcctgcggag attgttcctg cgactgtact attaagcaag agatgaacga
     2821 atcttctcac catagacatc cataacaaaa aggtctgcct cattattgtg cagacctttt
     2881 tacatgtagc ttgtctatta aatttttaag taacggttca tggaaatgac tgatcccaag
     2941 gaaccaataa taataccaat tacaaaaagt gcgccaatca ttcctggaac aaagacattc
     3001 atactaatca gagacaaatc ttgactagca agactagcat ttactgaagt atagatcatc
     3061 ttataaagag aatagactag aacagaaggt aaaatagctc cgaggaaccc tacccaggca
     3121 ccttcccaga ggaatggtcc acggatataa ctgtttttag caccaaccag acgcataatc
     3181 tgaatttcac ggctacgaga aataatggta attcgaatag tattggaaat caagaagacc
     3241 gcagtaaaga gcaataaacc agtcgctgcc aatccccaag tccggactaa atcagccaac
     3301 ttgaaaatac gctctgtctc tacttcacca tctcgaacct ctgtaacacc atcaatttta
     3361 gcaatctctg cagccacaga tttaacataa tttggatctg ttgtatcaat gatgtaagca
     3421 tcgtaaagtg gattggcatc tccttggaat aagttccaag tttctcccaa ggtagctgtt
     3481 aatttctgca actgttcatc cttacttgaa taagtaacag attgtacatt ttctaaggct
     3541 gtaatctgat tgtacacctt tagataatct ggattagcta ccgtctctcc tgcttcgttc
     3601 acaatcgtct cagcttgatc ggttgagttc gctctcaaat acacattgat gcgtacattc
     3661 tgttccaaat ccgaggcgag ctttgctgtg ttcaaaataa ctgaagcaaa tagaccaacc
     3721 aaggtaaggg taatggctac agatgaaatg gctgcaatcg tcatccaacc atttcgcttc
     3781 aaactcttca atgactcaat aaagtgtcta aaaaatcgat tactcatcgt atccatattc
     3841 tccttccgct tcatcacgta ctacacgacc atcttcaatc gcaataacac gatgacgaag
     3901 tgtatttaca atctgactat tgtgtgtcgc catcaaaatc gttgtcccct gcaaattgat
     3961 tcgctccaat agattcatga tttcccaaga gttttcaggg tccaagttac cagttggctc
     4021 atcagcaatc aatactttag gattatttac aatggcacgg gcaatagcaa tccgctgttg
     4081 ctcaccacct gaaagttcat ttgggaaaga acgaattttg tgcttcaaac caaccaaatc
     4141 taaaacttcc attacacgtt tcttgatatt ccgtggtttc tcaccgataa cttccatcgc
     4201 ataggcaata ttttcaaaga cagtcttttt aggtaagagt ttgtaatctt ggaaaaccac
     4261 tcctacacta cgacgcagaa gaggaacatc tctcttttta atttttgcaa ggtcaaactt
     4321 accaaccttt agactcccct tatcgagctt ttcctcccga tacaagagtt tgataaaggt
     4381 tgacttacct gcaccagaag gacctacaat gtaggtaaat tctcccgctt caacattaac
     4441 tgatactccg cgaagggcag tcgttccgtt tccatatttc ttggaaacgt ctttcatttc
     4501 tattattccc ataggatttc ctgtcttaga cagtcctttc tttagatttg agaacgtttt
     4561 ttcaaaatac agtccgtatt ctttaaaaaa acttccttga tgagcgaaaa actatctctt
     4621 atttacaagc acttcacttg taaatacagg ttcttagcta attcgccatt ttaaataagc
     4681 atctataaag ccgtccaagt ctccgtccat aaccttatcg acttgagcca cctcataacc
     4741 agtacggtgg tcttttacca tagtataagg cgtaaagaca taggaacgaa tctgacttcc
     4801 ccaagtaatt tcttttttat ctcccttgag tgagtctact tctgccgctt tcttctcctg
     4861 ctccaattga tacaatttag cctgcaagag tttcattgca cggtctcggt ttccatactg
     4921 agtacggtca actgtggact gagtaacaat ccctgtcgga atgtgcgtca atcgaacacc
     4981 cgttgagacc ttgttgacgt tctgtccacc agcaccacct gaacggaagg tatccatctt
     5041 cacttcatca tctctgattt caatttcaat ggtatcgtcc aactcaggca ttacctctac
     5101 agatgtaaag gaagtatgac gacgcttagc tgagtcaaaa ggtgagatgc gcaccaaacg
     5161 atgaacaccc atttctgact taagcaagcc ataggcgttt ggaccagtaa agcttagagt
     5221 cacggactta atacctgcct catcaccagc ttgataatcc aaggtttcaa ctgtaaaacc
     5281 tttggcattt ccataacgct gatacatccg caggagcatt tctccccagt cttgtgcctc
     5341 ggtaccaccc gaacctggat ggatttccaa gatagcgtta ttgtgatcat agggttctga
     5401 caagagcaag gtcatttcgt aagcagtcat ggttttgtcc aattccgcta acttttcaac
     5461 caactcatcc cgcacagact catcttctgc tagaaaatcc agcaaaattt cagattcatc
     5521 atataaatcc aacatctgat ggaaatttcc ataagtattt tttaattcat tcaactcctg
     5581 agacgtcttc tgggctgcca aattatcatt ccagaaatct ggctccgtca tcttgttctc
     5641 aagaatggca atctcttctt ccagaccttc taagtcaaag agacccccta aaagaagtta
     5701 attttttgcc aagttcttca atcttttggc gaatttctgc tgtatccata tacacctcat
     5761 ttttattcat aatctttatt atatcacatt tgcaagtcct tgaccatgtt gagaaaggcc
     5821 atttgctctg ctatgacatc atcattgtct gatgaaatac ctgcgataaa ggaaaccatc
     5881 tcatcattgg gatgtttgac caattgcccc aaggcccaga tagccgtcgc catgtggaca
     5941 ggattttgtt tcttatcgat gatttctagg agtttgggaa tggcagagcg gtcattgtta
     6001 ttagctaagg caatgatggc attgcgctgg agaatatttt tcccccgcca agaacctgca
     6061 atcataccaa atttctcctt gaattgtcca tttgacaagt ccaagaatgg aatcagctca
     6121 ggctcagcca attctgggtc aatctccacc acaggtggac tagaaattcc cttgttgtaa
     6181 ggacaacaaa tctggcaaat atcacaacca tatatgaccg tcttgatttt cttacgaaac
     6241 tccaagtcca tcataccctt atcctgggtc tgaaaggaca agcaacgacg ggcattcatg
     6301 gtcgtatcac ctaatagaca agacgtcgga caggctgcaa cacagcgatt acaatcgcca
     6361 caatcataat ctactggttg atctggttcg atgtccaggt tggtcactaa ttctcctaga
     6421 aacatatagg aaccaaattc cttagaaatg actagcccat tcttaccgat aaagccaatt
     6481 cctgctcttc tggcaacagc tgtatccacc aaagctcctg tatctaccat agccttgtat
     6541 tccaaaccat ccgtcagtct ctcaattccc cgtgccaaac gctccatctt atcttgcaag
     6601 atatagtgat aatcaagccc ccatgaacta ggggtaatct tcccacgttt gtattgggtc
     6661 ttctgcggtt taacaggcaa atgtcgagga taagctaccg cgatagaaat gatggttttg
     6721 gcagattcta acgacagttt gggacggata cgttcttcaa tattcttgtg ttcaaatcct
     6781 gacgaacgcc cttcttcctg actagcacga agtgatttct ccaaataagc aaaatcatca
     6841 gccgttgtaa aaccaatctt cgagattccg atttcctgag ataatttaat aatctcttcc
     6901 ttaatattca ttatattcat tttagcaaac tttggatata tttagcaaga cctacatagc
     6961 taaataagtt attaatataa caaaaaacgt tagcacaaaa caaaaaatat tcatccgaac
     7021 ataggccttc tcccgccaaa tactggtcaa gacatacatg atattaatac cgattgctcc
     7081 ccctaagccg ttagccagta aatcagttat atctgcaacc ccaagtaaaa gaagatattg
     7141 cagaacctca aagcagagac tcactaacat aatcaaacat agattagcca cccacgatgc
     7201 cttgcgaaat agcatttcca tataaatacc aaagggaata aaacttacaa tattaaatag
     7261 aatttctgga aaatccagca ctccatcata gaccgctgtt cctgcaaacg gaattaagtt
     7321 tatactagca taaccatagc gtccatatac gatgctcaag tccatcttaa agacaatcat
     7381 ccaagtaagt aaaaggagat aggcaaaaaa taaaaacata ctcattttct ttgtctgcat
     7441 agaaattttc ctctcaacta gcatatttta tcattatatc ataaattctg ttctataaat
     7501 tgtcacttct gtgacaaagc tcattccata ttacaagtac tttacagcct actaaaaaca
     7561 gaaaaggaag acactaccaa gcctcccctt attcccaaaa atatcttatt aaaatgtctg
     7621 attgctatgc tgaaaagcct tatattgatg gatttgtagc atcaaacgct caaagttcgc
     7681 ttccttacat gctcgcatga tcaagaagca atcaataaac ttccacaaat aaagtcccaa
     7741 aaataacaag aacccaatca agataaatag cgtaacaaaa gatactgcaa aagcaatcag
     7801 cttggcaaat cccaattctt tattcccgac ataaaaacgg tcgacaccaa actcaccgaa
     7861 gaaaatagcc aaaataagag cgacaagagg ttgacgcatc tcaaccatca taagaacgtt
     7921 taaagcctca tcatctaaat cttctagttc tttttgcaga atgaataact tatcagatgg
     7981 taaataactg cttttactta aaatataatt ctgaagataa ttcatataaa ctcctacctc
     8041 ttcaaaatta tagcagtttc ttattcttca agcaagcctg taggggaaaa cagtgtcaga
     8101 aatcgtttac atttttttct tttttgctat aatgaaacta gattacaagg aggttcatat
     8161 gagagttatt attcattatc caaaacctac caaacaacta tcctcccaaa aacttccgct
     8221 cctggtagat ggaaaaattg ctgggacagt tactcaaggt aaaattctaa gcttaccaat
     8281 tacacaacca tctgtcacac taagcattcg aggggataaa aaatcaagca ttcaagttaa
     8341 agaaggcgat agggtccaaa tagtggagaa tagcaagtac ttcattctc
//
LOCUS       DASFRC010000095         8074 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.095, whole genome shotgun sequence.
ACCESSION   DASFRC010000095 DASFRC010000000
VERSION     DASFRC010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8074)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8074)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8074
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.095"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(10..837)
                     /gene="xth"
                     /locus_tag="U1087_001479"
     CDS             complement(10..837)
                     /gene="xth"
                     /locus_tag="U1087_001479"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEM4755948.1"
                     /translation="MKLISWNIDSLNAALTAESPRALLSRAVIDTLVTEDADIIAIQE
                     TKLSDKGPTKKHLEILESYFPGYANTWRSSVEPARKGYAGTLFLYKNHLSPTITFPEI
                     GAPTTMDSEGRIITLEFDDFYVTQVYTPNAGDGLKRLADRQIWDVQYADYLAKLDSHK
                     PVLATGDYNVAHKEIDLANPASNRQSPGFTDEERQGFTNLLAKGFTDTFRHLHGDVLN
                     AYTWWAQRSRTSKINNTGWRIDYWLVSDRIADKVSKSDMIDSGARQDHTPIVMEISF"
     gene            993..2654
                     /locus_tag="U1087_001480"
     CDS             993..2654
                     /locus_tag="U1087_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4755949.1"
                     /translation="MKRKLFVFAWLALVLEMLIYYWYQLPALNILSVDFWIFFLQSVG
                     LVWLILSMFSSKGAFQKVTKISGRQRQVDTYQIKTSQLPAYLKWLGRIWVLVVLGLLG
                     LGLINSRVFRAKDYAAVISVKDADFKADFPETDISKLALLDRASAEKIGDTYLGTIDK
                     VSQFGISDDYRQITIGQQPFRVSPLEYKNFWKWLSNHQDGIGYYVKVNQTTGKAELAK
                     LSKAMHYSDSEFLLNDTLRHLRLQYPTTIFGKPSFEVDDQGNPYYIATIYEPKFGLSS
                     NDPIGAIVLDAVTGESKKYSLEDIPEWVDRVYSANNVISRVDDHYTYQNGFWNTIFSQ
                     TGVKNTTDSYNYISIGSDIYLYTGITSATADSSNLGFILVNMRTREITNYKLASATET
                     AAQESAEGEVQEKGYKATAPSLVKLADTAYYLVSLKDDAGLVKSYALVDAEDYQQVTV
                     NNDIALLISQVTGTDASSLSGLTVTENGEVGEQTEVISGKVEALASQIIGGATIYYIE
                     SEGKIYKVKATEDSTDRLPFIKVGDHFSGQLDKKNYLKNFKVNPE"
     gene            2814..4202
                     /locus_tag="U1087_001481"
     CDS             2814..4202
                     /locus_tag="U1087_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEM4755950.1"
                     /translation="MSLFRKKQAVGRHSQMRRHLGLVDLIFLGIGSMVGTGIFTVTGL
                     AAAQYAGPALIISIVIAAISVGLTALFYAEFASRIPTNGGAYGYLYSVFGEFPAWIAG
                     WLTIMEFLTAVSSVASGWGAYLKGLLANFGIAMPTALNGTFNPAAGTYVDLLPVLVLI
                     FVVGVVLLNSKAALRFNSALVVLKFSALALFILVGLFFIKPENWSNFSPFGFGAIYGG
                     QAGIMAGASLMFFAFLGFESISLAIDEVKKPEKNVPKGIVLSLSIVTILYIVVTLVLT
                     GMVHYTKLNVADAVAFALREVGLDWAASYISIVAILTLITVCISMTYALSRMVYSISR
                     DGLLPKSLSRLTQTSKVPKNATILVGIFAAICAGIFPLASIASFLNICTLAYLIMLAL
                     GIIRLRQVEGLPKDGQFKTPLVPLLPILSIIICLSFMFQYSLDTWLAFGVSVVIGILI
                     YFCYGYRHSEAK"
     gene            4325..5206
                     /locus_tag="U1087_001482"
     CDS             4325..5206
                     /locus_tag="U1087_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF975 family protein"
                     /protein_id="HEM4755951.1"
                     /translation="MSNSDIRAKATVIREQTDGMITLFLAPVLISFLSGVAEFGLKQI
                     WGQTGTFSWGTTIVKDGVTWTHNFISVGPSIIFDFIAQCLIVTACFQLIRLVRKQRTK
                     VNFTECFTLLDGKNFLPVFSTTLLKMLVLYLASFPAALGMILIGLAFYSTIVIFGAPI
                     DYQPDFSAFFSSSYFQTGLILVCVGITCSLFVGYGLSQVSFLLYDYLENNTYSSPFKL
                     FSQSWQLMKGNKWRRFLLDLSFIGWFIGVLLTFGFLGLYVYPYYWTCQTIFYEDLKAK
                     NPLMFSTYKSVISSTVA"
     gene            5399..6235
                     /locus_tag="U1087_001483"
     CDS             5399..6235
                     /locus_tag="U1087_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF975 family protein"
                     /protein_id="HEM4755952.1"
                     /translation="MMTSDIVSRAMMTRERTRGTTLLFLPSILLSIVYAVPVTIFRLL
                     TFLELRQNSAVVEGRLVSSIRLTYLGELGFALLLQLFIGLSCFHLLELLRGDRQEFSL
                     KDSFSFLKTEWKKPICTTFLYYYLLLFMAGLPANLGAALFIKGFAMSSLMVLSPGAMA
                     ELAVHQPSQLMKIGAPIFLLGMIIYLFVYYTYSQVVFVLYDHLDNASYTGPLAVFRES
                     RFLMKGNYWQRIWLDLSFLGWFIGEVFTLHLLSFFVTPYYHLSRTIFYEKLKKQRLSA
                     VE"
     gene            complement(6253..7128)
                     /locus_tag="U1087_001484"
     CDS             complement(6253..7128)
                     /locus_tag="U1087_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM4755953.1"
                     /translation="MKTEFINEKAQSAFNLNIITSPIVAIILLLVGDSLGAVIFTPIS
                     FLLPFSETLSVSFELFAFAFISLMVILWARYIEKSPWVGLGFTKKGAGKDFLLGWGIG
                     AAMLTTCTLIMWGLGAIEFTSIQFSTKLVGEFIILILAWSIQGTTEEILTRGWMFSSL
                     SAKHNIPIGIIVSSLFFTFLHLGNNAISLIPILDLTLFAVLACLIMLKTGNIWVIGGL
                     HAAWNCFQGNVFAFPVSGTDAGQAFVQIGITGPEWLSGGKFGVEGSIISLLVQGIMIS
                     WLVYDLYFKPKTSSL"
     gene            7251..7862
                     /locus_tag="U1087_001485"
     CDS             7251..7862
                     /locus_tag="U1087_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3885 domain-containing protein"
                     /protein_id="HEM4755954.1"
                     /translation="MELNQWLKSFQLKDNRLVGPFFYGTLLALRFEIGPADEAEELSR
                     AIYLERAYARAVELFEQASSEYDYVLLSLLRQEDRDIDTYLWHFSSKFNFDKVPEPEL
                     IEVEDWTGDVLVFECYLFPVTDQDLKALLREIVKADHGGFHYLSASVIFLSSKDKALY
                     HCYDDRGVDIAVVDDDKRLELFTDCHDLLLDYDMEEMERRVRG"
BASE COUNT         2256 a         1443 c         1791 g         2584 t
ORIGIN      
        1 tatccactgt tagaatgaaa tctccatcac aattggtgta tggtcctgac gagcaccgga
       61 gtcaatcata tctgacttac ttactttgtc ggcgatgcgg tcgctgacaa gccagtaatc
      121 aattctccag cctgtgttgt tgattttact ggtgcggcta cgttgtgccc accaagtata
      181 ggcgttgaga acatcaccgt gcaagtggcg gaaggtatct gtaaaacctt ttgctagaag
      241 atttgtaaaa ccttgacgtt cttcatctgt aaaccctgga gattgacggt tacttgcggg
      301 attagcaagg tcaatttcct tgtgagcaac gttgtagtca cctgttgcaa gaacaggttt
      361 gtggctatca agttttgcta agtagtcagc atactgtaca tcccagattt gacggtcagc
      421 aagccgtttc aagccatcac cagcatttgg cgtataaact tgtgtgacat agaagtcatc
      481 aaattctagc gtgatgatac gcccttcaga atccatggtt gttggagcac caatctcagg
      541 gaaggttatg gttggactta gatggttttt gtagaggaag agtgtaccag catagccttt
      601 gcgagctggt tctacagatg aacgccaggt attggcatat ccagggaagt agctttccaa
      661 aatttctaga tgctttttag tcggtccctt atctgacaat tttgtttcct gaatggcgat
      721 aatatcagcg tcttctgtca caagtgtatc gatgactgca cgtgataata gggcgcgagg
      781 agactctgca gtcaatgcag cgttaagaga atcaatattc caagaaatga gtttcataat
      841 tttccttttc tagtctgtta ctgttttaca ttataccaaa aataaaagtt gcaggcgaat
      901 atggaaactt gaaaaaaatt ttataattct tgtattataa cattaaaatt gtgatacaat
      961 agaactaata aatctgtgtc aaggaggtta ttatgaaaag aaaattattt gtttttgcct
     1021 ggttagccct agttttggaa atgctaatct actactggta ccagttgcct gctttaaata
     1081 ttttgagtgt ggacttctgg atatttttcc ttcaatctgt cggattggtc tggctcatac
     1141 tttccatgtt cagctccaaa ggtgcttttc aaaaggtgac caagatttcc ggtcgccaga
     1201 gacaagtaga tacctatcag attaaaacct cgcaactgcc agcttactta aaatggttgg
     1261 gacgaatttg ggtattggtt gtcctgggtt tgttggggct ggggcttatc aactcacgtg
     1321 tatttcgtgc taaggattac gctgctgtca taagcgttaa ggatgcggat tttaaagcag
     1381 attttcctga aacagacata tccaaattgg ccctcctaga ccgcgcctcg gccgaaaaaa
     1441 tcggtgatac ttatctaggt accattgaca aggtctccca gtttggcatt tcggatgatt
     1501 atcgccagat tactatcggt cagcaaccgt tccgtgtatc gcctttggaa tataagaatt
     1561 tttggaaatg gctgagcaac catcaagatg ggattggtta ctacgtgaag gttaatcaga
     1621 caacagggaa ggcagaactt gccaagttga gcaaagccat gcactattca gattccgaat
     1681 ttttgctgaa tgatacctta cgtcatcttc gcttgcaata cccgacaact atttttggga
     1741 aaccatcctt cgaagtggat gaccaaggaa atccatatta tattgcaacg atttacgagc
     1801 caaaatttgg actttcatca aatgatccga ttggtgctat tgtattggat gcagtaacag
     1861 gggaaagtaa gaagtatagt ctggaagata ttccagagtg ggtagaccgt gtttattcgg
     1921 caaacaatgt tatcagccgt gtagatgacc actatactta tcaaaatggt ttctggaata
     1981 ccattttcag tcaaactggt gtgaaaaata caacagacag ctataattat atttctatcg
     2041 gctcagatat ttatctctac acaggtatca cctcagcaac tgctgattca tccaaccttg
     2101 gatttattct tgtcaatatg agaactcgtg aaattaccaa ctacaaattg gcttcggcga
     2161 cggaaacagc agcgcaagag tccgcagaag gtgaagtgca ggaaaaaggc tataaagcca
     2221 ctgctccaag cctggttaag ttggcagata cagcctacta tttagtatcc ttgaaagatg
     2281 atgccggctt ggttaaatca tacgctcttg ttgatgccga agattatcaa caggttactg
     2341 ttaacaacga tattgcgctc ttaatttctc aagtcacagg aacggatgct tctagccttt
     2401 caggattgac ggtgactgaa aatggagaag ttggtgaaca gactgaggtt atcagtggaa
     2461 aagtagaagc tttagcgagt caaataattg gcggtgcgac aatctactat attgagtctg
     2521 agggcaagat ttacaaagtc aaagcaacgg aagatagtac agatcgatta ccatttatca
     2581 aagtaggaga tcactttagc ggtcagttag ataagaaaaa ttatcttaaa aactttaagg
     2641 ttaatccaga ataatcataa gaaagagtga ggtagaaaag ccttgctctt ttgcttgtcg
     2701 tcacccatgc gaaatatttc aacttatggt ataatggggc gttgtggttc tttgacagga
     2761 atccgtagat tattctgtcg agtatccata ttcttattct gaaggagtat tttgtgagtt
     2821 tatttagaaa aaaacaagca gtcggtcgcc atagtcaaat gcgtcggcat ttaggcttag
     2881 ttgatttgat atttttaggt atcggttcga tggttggaac aggtatcttt acggtaactg
     2941 gtttggcagc agcccagtat gcagggccag ctctgattat ctcaattgtt attgcagcaa
     3001 tttcagtcgg actaacagcc ttgttttacg cagaatttgc ctcgcgtata ccgactaacg
     3061 gtggtgccta tggttatctc tactcggttt ttggtgaatt tcctgcctgg attgctggct
     3121 ggctgacgat catggaattc ttgactgctg tatcgagtgt tgcatctggt tggggagctt
     3181 atttgaaagg actcctggct aattttggta tcgctatgcc gacagctttg aatggaactt
     3241 ttaaccccgc tgcaggtacc tatgtagacc tcttaccagt tctcgtcttg atttttgtgg
     3301 taggagtggt cttgcttaat tctaaggcag cacttcgttt caattcagcc ttggtagttt
     3361 tgaaattttc agcgttggct ttatttattt tagtagggtt attctttatc aaaccagaaa
     3421 actggtcgaa cttctctcct tttggttttg gtgccattta tggtggacag gcaggaatta
     3481 tggcaggagc gtctctcatg ttctttgcct tcctgggatt tgagtctatt tcattagcaa
     3541 ttgatgaggt gaaaaaacct gagaagaatg taccaaaggg aatcgtgttg tctctatcca
     3601 ttgtaacaat tctttatatt gtagtgacat tagtcttgac tggtatggtt cactatacta
     3661 agttgaatgt ggcagatgcg gtagcctttg cacttcgaga agttggattg gattgggcag
     3721 cgagttatat ttctattgtt gcaatcctaa cattgattac agtatgtatt tcgatgacct
     3781 acgccttgtc gagaatggtc tattccatca gtcgtgatgg tttgctaccg aaatcattga
     3841 gccgattgac acaaacaagc aaggttccta aaaatgcgac cattcttgtg gggatttttg
     3901 cagccatttg tgcaggtatt ttcccactag caagtattgc ttccttcctc aatatctgta
     3961 ccttagctta tttgattatg ctggcgttgg gtattattcg tctgcgtcaa gtcgaaggtt
     4021 tgccaaaaga tggacaattt aaaacacctc ttgttccctt gttacctatc ctctcgatta
     4081 tcatttgtct ttcatttatg ttccagtata gtttagatac ttggttagca ttcggagtat
     4141 ccgtggttat tggaattttg atttacttct gttatggcta tcgtcattcg gaagcaaaat
     4201 aatagatttc ccttctttat ttgaagggat tttttgtaca atttttttat agaaataatg
     4261 gaaaacttaa aaataaaata gtataatata tataatgata caaatatatg aaaggagaaa
     4321 cgcaatgtct aatagcgata ttcgagctaa agcaacggtt attcgtgaac aaacagatgg
     4381 gatgataacc ttgtttttgg cacctgtttt gatttctttt ctgtcaggag tggcagaatt
     4441 tggcttgaaa caaatctggg ggcaaactgg tactttctcc tgggggacaa ctattgtgaa
     4501 agatggtgtt acttggacgc ataattttat ttctgtgggc ccgtcaatca tatttgattt
     4561 tattgcacaa tgtttaattg tgacagcttg ttttcaacta ataagactgg tgagaaagca
     4621 aagaaccaag gttaacttta cggagtgttt cactttacta gatgggaaga attttttacc
     4681 agtttttagt acgacattat tgaaaatgct ggtcttgtat ttagcaagtt tccctgctgc
     4741 tcttggaatg atattgatag gtttagcttt ctatagtact attgtcatct ttggtgctcc
     4801 tattgattat cagcctgatt tttcagcttt tttcagttcg tcttattttc aaacaggatt
     4861 aatactggta tgtgtaggga ttacttgtag tttattcgta ggatatgggc tcagtcaggt
     4921 ctcttttctt ctctatgatt atttggaaaa caatacctat tcttcaccat ttaaactctt
     4981 cagtcagagc tggcagttga tgaaggggaa taaatggcgc cgtttcctct tggatttatc
     5041 ttttatcggc tggtttattg gagttctttt gacgtttggg tttttgggac tttacgtata
     5101 tccatactat tggacttgtc agactatatt ttatgaagat ttgaaggcca agaatccatt
     5161 gatgttttca acatataaat cagttatctc ttccacagta gcctagggag tatggagata
     5221 acaaattatt aggaatccct tcgtattttg gagggatttt cctgttttta agagatgttc
     5281 tggaaaatta atggataaag ttttatacta atagtaggat ggtaaagtag tccgatgttg
     5341 atggaatatt tgcgacgtga cttcataaat aaggagagaa aattggaggg gaattgtgat
     5401 gatgacgagt gatatagtat caagagcgat gatgactcgc gagcggacaa gaggtacaac
     5461 actactattt ttgccctcca ttttgctatc tattgtttat gctgtaccag taacaatttt
     5521 tcgcctacta acatttctag agctccgtca aaacagtgct gttgtggaag ggcgattggt
     5581 ttcttcaatc aggttgactt atttaggtga gttaggcttc gctctgctgt tacagctgtt
     5641 catcggtctg tcctgttttc atttattgga attgttgaga ggggatagac aggagttttc
     5701 tttaaaagat agtttttcct ttctaaagac agaatggaag aagcctatct gtaccacttt
     5761 tctttattat tatttgcttc tttttatggc tggacttcca gctaatctag gggctgcttt
     5821 atttattaaa ggcttcgcaa tgagtagttt gatggtctta tctccgggag caatggcaga
     5881 gctggcagtt catcagccta gtcaattaat gaagataggg gctccgattt tcctgctagg
     5941 aatgattatt tacctttttg tctactatac ctactcacag gttgtttttg tcttgtatga
     6001 ccatttggat aatgctagtt atactggtcc cctggctgta tttagggaaa gtcgtttctt
     6061 gatgaaaggg aactattggc aacgtatttg gttagattta tcctttttag gatggtttat
     6121 cggggaagta tttacccttc atctgttatc tttttttgtg actccttact atcatttatc
     6181 caggaccatt ttctacgaaa aattgaaaaa acaaagactg tcagctgtag agtagctaac
     6241 agtcttttat ggttataggg agcttgtttt gggcttgaaa tagagatcgt aaaccaacca
     6301 ggaaatcatt attccttgga caagcaagct gatgatggag ccctctacgc caaactttcc
     6361 accagatagc cactcaggac cagtgatacc gatttgaaca aaggcctgac cagcatcggt
     6421 gccgctgact gggaaagcaa aaacattccc ttggaaacag ttccacgcag cgtgtaatcc
     6481 accaatcacc caaatgttgc ctgttttgag cataatgagg caggcaagaa cggcaaatag
     6541 ggttaaatcc aaaattggaa tgagtgaaat agcattgttt ccgaggtgga gaaatgtgaa
     6601 gaagagggaa gaaacaatga taccgatagg aatattgtgt ttagctgaaa gtgatgagaa
     6661 catccatcct cttgttagaa tttcttctgt cgtaccttgg atagaccagg caaggataag
     6721 gataataaat tctccgacta attttgtaga gaactggatg cttgtaaatt caatcgcgcc
     6781 taatccccac atgatgagtg tacaagtggt cagcattgca gctccgattc cccacccgag
     6841 tagaaaatct tttcccgcac cttttttagt aaaaccaagt cctacccacg ggcttttttc
     6901 aatataccgt gcccataaaa tgaccatcag gctgataaaa gcgaaagcga atagttcaaa
     6961 acttacagaa agggtctcgc taaatgggag taaaaagctt attggagtga aaataactgc
     7021 tcctagtgaa tctcctacta gcaacaaaat aatagctaca ataggagagg tgatgatgtt
     7081 gagattgaaa gctgattgag ccttctcatt gataaattcg gttttcatag gacctccttt
     7141 tactagatac tttactagtt cactattcta tcatattttt ccaaagaaga ctagacctaa
     7201 tttcctagta tatggtagaa tagtacaaag ctatataagg agaatagtat atggaattga
     7261 atcaatggct gaagtccttt caactgaaag ataatcgact agtgggccca ttcttttatg
     7321 gcacacttct tgctcttaga tttgaaatcg ggcctgcaga cgaagcagaa gaattatcaa
     7381 gagcaatcta tcttgaaaga gcctatgcac gtgcagtaga actttttgag caggctagtt
     7441 cagaatacga ctatgtgctc ctttcgctcc ttcgacagga agatagggat atagacacct
     7501 acctctggca tttttcatcg aaatttaact tcgacaaggt ccctgagcct gagttgatag
     7561 aagtggagga ttggacggga gatgtgctag tctttgagtg ctatctcttt ccagttaccg
     7621 accaggacct gaaggctttg ttgagggaga ttgtcaaagc cgaccatgga ggttttcact
     7681 acctttctgc ttcagttatc tttctatcta gcaaggacaa ggctctgtat cattgctatg
     7741 acgatagggg agtggatatc gcggtggtag atgatgacaa acgtttggag ctctttacag
     7801 actgccatga cctccttttg gactatgata tggaggagat ggagagaagg gtgagggggt
     7861 aggaaaccac tgctaaaggt gatataccat ctcttagata aaagtacttc acaagtgaat
     7921 acaggttcaa aaaaattcac agtaaaacct gtggaaaata tggtagaata gaacagtaga
     7981 aaagttccaa aagtggggcg gaaatctatt ttgggaggtg gcaacttcat ttttgatgga
     8041 aagtaaaact ttctcatcaa aaaacgaggc tggg
//
LOCUS       DASFRC010000096         7962 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.096, whole genome shotgun sequence.
ACCESSION   DASFRC010000096 DASFRC010000000
VERSION     DASFRC010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7962)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7962)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7962
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.096"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(193..1389)
                     /gene="tuf"
                     /locus_tag="U1087_001486"
     CDS             complement(193..1389)
                     /gene="tuf"
                     /locus_tag="U1087_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014335040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEM4755955.1"
                     /translation="MAKEKYDRSKPHVNIGTIGHVDHGKTTLTAAITTVLARRLPSSV
                     NQPKDYASIDAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQM
                     DGAILVVASTDGPMPQTREHILLSRQVGVKHLIVFMNKVDLVDDEELLELVEMEIRDL
                     LSEYDFPGDDLPVIQGSALKALEGDSKYEDIVMELMNTVDEYIPEPERDTDKPLLLPV
                     EDVFSITGRGTVASGRIDRGTVRVNDEIEIVGLQEEKSKAVVTGVEMFRKQLDEGLAG
                     DNVGVLLRGVQRDEIERGQVISKPGSINPHTKFKGEVYILTKEEGGRHTPFFDNYRPQ
                     FYFRTTDVTGSIKLPEGTEMVMPGDNVTIDVELIHPIAVEQGTTFSIREGGRTVGSGM
                     VTEIEA"
     gene            complement(1745..2728)
                     /locus_tag="U1087_001487"
     CDS             complement(1745..2728)
                     /locus_tag="U1087_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti sigma factor C-terminal domain-containing
                     protein"
                     /protein_id="HEM4755956.1"
                     /translation="MNMKTFEIATKKSKKKHLWKTVGLSILGLLLITGATLKTLQILT
                     ANNGEKIYQEHELLSQVAYPNIEYSTYYYKATSLFAGAVHADRHKDLAGVPVAFGDYE
                     YHYDWLGTYLNFSQDGPSYKGEIAYDRQTWSKLPLFYNTEKVDTDDFATVPSQELSLV
                     KDMSNQLVEVAITFDKKYSFGDLQTMLPQNLKKNWYWIGTASKKNTADFRIDQLFGFQ
                     GEALKVYEPDAELPAEAATWNPLTPMKKIAEQYNHYIGEYALVTDVKTFLDKFGKTDF
                     SKQEEIDQLEFAGIILTGKAEDFAQLEGKDWIYASSIGASIPIQPYYQLHH"
     gene            complement(2709..3212)
                     /locus_tag="U1087_001488"
     CDS             complement(2709..3212)
                     /locus_tag="U1087_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEM4755957.1"
                     /translation="MSIKLDQYEKEIIGIAEEISYYLQKSGATFSDSQDIAQDVLVKI
                     LEAELVLPFDKLRAWLYRSAVRAYIDKYRRDKRYHEILQKEFFTPENFLVYDQEDYEE
                     LYQAVADLPAKYQHVIDLYYFQDMSVKEIAHILGYSQSLVKINLYRGRKLLAKNLKEK
                     GYEYENF"
     gene            complement(3327..6023)
                     /gene="ppc"
                     /locus_tag="U1087_001489"
     CDS             complement(3327..6023)
                     /gene="ppc"
                     /locus_tag="U1087_001489"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000058210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HEM4755958.1"
                     /translation="MAIQKLENYNNKEAIREEVTILTSILEEVAAQMMPAETFAKIVE
                     LSQLSRQDDYQALIAIISQLNNDELAVISRYFAVLPLLINISEDVDLAYEINHQNNID
                     QDYLGKISTTIDMVSKQENAAEILEKLNVVPVLTAHPTQVQRQSMLDLTKHIHELLRR
                     YRDVKLGLLNKNKWEDELRCYIEIIMQTDMIREKKLKVTNEITNVMEYYNSSFIKAVT
                     KLQREYKRLAAEKGIVLNNPRPITMGMWIGGDRDGNPFVTAETLKLSALTQCEVIMNY
                     YDEQLYKLYRNFSLSTSIVNVSTAVKMLADLSEDSSVYRENEPYRRAFHYIQMKLANT
                     RDYLVHNKPSDARYSNVAEFKADLLAIKQSLVENKSMALLKGDFTELLEAVEAFGFYL
                     ASIDMRQDSSIHEASVAELLASARIVEDYSSLSEEAKCHVLLKQLETDPRILSATHMP
                     KSEQLEKELAIFAAARELKDKLGEEIIKQHIISHSESVSDLLELAVLLKEVGLVDVDK
                     ARVQIVPLFETIEDLDNAPDTMRQYLQLDLAKRWIAGNKYYQEIMLGYSDSNKDGGYL
                     SSGWTLYKAQNELMQIGQDYGVNITFFHGRGGTVGRGGGPSYDAITSQPFGSIKDRLR
                     LTEQGEVIGNKYGNKDAAYYNLEMLVSATLDRMVTQMITDPNEIDGYRETMDEIVSDS
                     YRIYRDLVFNNPHFYDYFFAASPIREVSSLNIGSRPAARKTITEIGGLRAIPWVFSWS
                     QNRVMLPGWYGVGSSFKRFIDKHPDNLSKLQKMYESWPFFRSLLSNVDMVLSKSNMNI
                     AFEYAKMCESEEVRNIFHVILDEWQLTKEIILSIEQNDELLAELPFLKASLDYRMPYF
                     NVLNYIQIELIHRLRRGELSKEQENLIHITINGVATGLRNSG"
     gene            complement(6044..7258)
                     /locus_tag="U1087_001490"
     CDS             complement(6044..7258)
                     /locus_tag="U1087_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HEM4755959.1"
                     /translation="MKIDKRQLLNYSILIPYLILSVIGLVMVYSTTSATQIINGRNPF
                     RTVINQAGFWIVSLVAIYTIYRMKLSFLRKKAVIYSVILVEVFLLAISRLFTPINGAH
                     GWIPLPIAGTLQPAEYLKLIIIWYLAHEFAKQQADIRTYDYVSLIKGSWIPKEFTDWR
                     VVSLLLLGLVATLPDLGNATIIVLIMVVMISVSGIAYRWFSTAILGIVVASTVILGTI
                     RILGVETVEKIPLFGYIARRFAAYFDPFGNATNSGLQLTHSYYAMSNGGWLGRGLGNS
                     IEKKGYLPEAHTDFAFSIVIEELGFVGASLILALLFFLIIRIIIVGVRARSPFNAMMA
                     LGMAGMLLIQTFVNIGGISGIIPATGVTFPFLSQGGSSLLIISIGIGFVLNIDASEKR
                     RLIEEEIERTLI"
     gene            complement(7395..7760)
                     /locus_tag="U1087_001491"
     CDS             complement(7395..7760)
                     /locus_tag="U1087_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4430 domain-containing protein"
                     /protein_id="HEM4755960.1"
                     /translation="MKKISIMLTVVFSLFLAACTNTTEKQSESAIEVTLQITTKDKEN
                     RQEVTAEEGDSVMDVLKEHHDIVEDNGLITEIDGVSQDTSTNTYWMYKVNGQMADKGA
                     KDLTVANGDEIEFYLETFE"
BASE COUNT         2373 a         1722 c         1461 g         2406 t
ORIGIN      
        1 tttaatccac tacctcacga tagtcagact tgcgaatcgc tactggtttc atcggtagca
       61 ggtacctacg gaggacctac acttctgatg tacgacatgc ctgtcatatt agaaaacccc
      121 actagccgag gctagtgggg tccaatgtta agttgtctga cttaaattgt tatttctggg
      181 aactcaatcg aattaagctt cgatttctgt aaccatacct gaaccaacag tacgtccacc
      241 ttcacggata gagaaagtag taccttgttc aacggcgatt gggtggatca attcaacgtc
      301 gatagtaacg ttatcaccag gcattaccat ttcagtacct tctggcaatt tgattgaacc
      361 agtaacgtca gttgtacgga agtagaactg tggacggtag ttgtcgaaga atggagtgtg
      421 acgtccacct tcttctttag taaggatgta aacttcacct ttgaatttag tgtgtgggtt
      481 gatagaacct ggtttagaga taacttgacc acgttcgatt tcatcacgtt gtacaccacg
      541 aagaagcaca ccaacgttat cgccggcaag accttcgtca agttgtttac ggaacatttc
      601 aacaccagta acaactgctt tagatttttc ttcttgaaga ccaacgattt cgatttcgtc
      661 gttgacacga acagtaccac ggtcgatacg tcctgaagct acagtaccac gaccagtgat
      721 tgagaatacg tcctcgactg gaagcaacaa tggtttgtca gtgtcgcgtt ctggttctgg
      781 aatgtactca tcaacagtgt tcatcaattc cataacgatg tcttcgtact tagagtcacc
      841 ttcaagagct ttaagagctg aaccttggat aactggaaga tcatcacctg ggaaatcgta
      901 ttctgaaaga aggtcacgga tttccatttc aaccaactca agcaattctt catcgtcaac
      961 caagtcaact ttgttcatga agacgataag gtgtttaaca ccaacctgac gtgaaagaag
     1021 gatgtgctca cgagtttgtg gcattggacc gtcagttgaa gctactacaa ggatagcacc
     1081 gtccatctga gcagcaccag tgatcatgtt tttaacgtag tccgcgtgtc ctggagcgtc
     1141 gatgtgagca tagtgacgtt tttcagtttc atactcaacg tgtgcagtgt tgatagtgat
     1201 accgcgttcg cgttcttctg gagcagcatc gatagacgca tagtcttttg gttggttaac
     1261 tgatgaaggc aagcgacgtg ccaatacagt tgtgatagct gctgtcaaag tagttttacc
     1321 gtggtcaacg tgtccaattg taccaatgtt aacgtgtggt ttactacgat cgtatttttc
     1381 ttttgccatt ttggtaaaag cctccaataa aatatatttt atagatagac agtaggcaat
     1441 acagtctaac tttaccttac tattctatca aattgtagca gaattgcaag cattttctat
     1501 cgttttttat tttatccatt ttctgcaagg gctattagct tcgcttataa ctttttttat
     1561 catcccattt taacctatta ctcaactaaa aacacctcac ttccatagga atattgatgt
     1621 taccatagct acaaggtgcc acaaatacga gactactgca acagaccttt ctccattcag
     1681 tcatcctacg actacctgac aagcctcttg ctataggtgt agaaaatata ttgactattt
     1741 tcacttaatg atgcagttga taataaggct gaataggaat ggacgcgcca atactagaag
     1801 catagatcca gtccttgcct tccaactgag caaagtcttc tgctttgccc gttaggataa
     1861 tgcctgcgaa ctccaactga tcaatctctt cttgtttaga gaagtccgtt ttaccaaatt
     1921 tgtccaagaa agttttgaca tctgtaacga gtgcgtattc ccctatataa tgattatact
     1981 gttctgctat ttttttcatc ggtgttaaag gattccatgt cgctgcctct gctggtaatt
     2041 cagcatctgg ttcataaacc tttagagcct ctccttgaaa accaaacaac tgatcaatgc
     2101 gaaaatcagc tgtgttcttc ttagaagctg ttccgatcca gtaccaattc ttttttaaat
     2161 tttgaggaag catggtctgc aagtctccaa aactatattt tttatcaaaa gtgatggcta
     2221 cttctactag ctgattggac atgtctttca ctagagaaag ttcttgactg ggaacagttg
     2281 caaagtcatc tgtgtcaact ttctccgtat tatagaagag agggagtttt gaccaggttt
     2341 gacgatcata ggcaatttct cccttataag aaggtccatc ctgagaaaaa ttcaaatacg
     2401 ttcccaacca atcatagtgg tattcatagt caccaaaggc aactggaacc cctgccaagt
     2461 ctttgtggcg atctgcatgg acagctccag caaatagaga ggtcgcttta taatagtagg
     2521 ttgagtattc aatgtttgga taggcaactt gtgacaataa ttcgtgttct tgatagattt
     2581 tttcaccatt attggcagtc aaaatctgta aggtcttcaa ggtcgctccc gttatcagca
     2641 agagccctaa tatagataga ccaaccgttt tccataagtg ttttttctta cttttctttg
     2701 ttgcaatttc aaaagttttc atattcatac cctttctctt ttaagttttt tgctagaagt
     2761 tttcgaccgc ggtaaagatt gattttcacc aaactctgac tatatcctaa gatatgggca
     2821 atctctttga cactcatatc ctgaaaataa tacaggtcaa tgacatgctg atacttggct
     2881 ggcaggtctg caacagcttg atagagttcc tcataatctt cttggtcata gaccaaaaaa
     2941 ttttcaggtg taaaaaactc cttttgtaaa atttcatggt agcgcttgtc tcgcctgtat
     3001 ttgtcaatgt aagcccgaac tgccgaacga taaagccagg ctcgtaattt atcaaaagga
     3061 aggacaagtt ctgcttctaa aattttcact agtacatcct gggctatatc ctggctgtct
     3121 gaaaatgtgg cgcctgattt ttgcaggtag taggaaatct cctctgcaat accaataatt
     3181 tctttttcat attgatctag tttgatactt atcccctcct ttcactgata aaacgaatga
     3241 aaatgtgttt ggttacacct tttttctacc attatatctt tttagacctc aaaaaaacaa
     3301 cctccgaaga agttgtttta tgtctattaa cctgagttgc gcaaacctgt tgccacaccg
     3361 ttgatggtaa tatgaatgag attctcttgt tctttgctca attctccacg acgaagacga
     3421 tgaattaatt caatctgaat atagttaagt acgttgaaat acggcatgcg ataatcaaga
     3481 ctggctttta ggaacggtag ttctgctaaa agctcatcat tttgctcgat tgacaaaatg
     3541 atttctttgg tcaactgcca ttcatctaaa atgacatgga agatatttcg tacctcttcg
     3601 ctttcacaca ttttagcata ttcaaatgcg atattcatat tggatttaga caataccata
     3661 tccacgtttg atagaagtga acggaagaat ggccaagatt cgtacatttt ttgtaactta
     3721 gacaaattat cagggtgctt atcaataaag cgtttgaaac ttgaaccaac tccataccaa
     3781 cctggcaaca tgacacggtt ttgtgaccag gagaataccc atggaatcgc acgcaaacca
     3841 ccgatttctg tgatggtttt tcgagccgca ggacgtgagc caatgttcag acttgatact
     3901 tcacgaattg gactagcggc aaagaaataa tcataaaaat gtggattatt gaacacaaga
     3961 tctctataaa tacgatagct atctgataca atttcatcca tggtttcgcg atagccatcg
     4021 atttcatttg gatcggtaat catttgtgta accatacggt caagcgttgc agataccagc
     4081 atttctaaat tataataggc tgcgtctttg ttaccgtatt tattgcctat cacttcgcct
     4141 tgttctgtca aacgaagccg gtccttgatg gaaccaaatg gctgagatgt aatcgcatcg
     4201 taggaaggac caccaccacg accaacagta cctccacgac cgtggaagaa ggtgatgttt
     4261 actccgtagt cttgaccaat ttgcatcaat tcattctgtg ctttgtagag tgtccagccg
     4321 gaggataggt agccaccatc cttgttggaa tctgagtagc caagcatgat ttcttggtag
     4381 tatttattgc ctgcaatcca acgtttcgct aaatctaatt gcagatattg acgcatggta
     4441 tcaggtgcat tatctaagtc ctcgattgtc tcaaaaagtg gaacaatctg aacacgggcc
     4501 ttatcgacat ctactagacc aacttctttt aataggacag ctaattccag taaatcagaa
     4561 acactctccg agtgtgaaat aatatgttgc ttgatgatct cctcacctag cttatctttc
     4621 aattcacgcg cagcagcaaa gatggccaat tctttttcta attgttctga ctttggcatg
     4681 tgcgttgcag aaagaatgcg tggatcagtt tccaactgtt tcaaaagaac atggcattta
     4741 gcttcctcag ataaactgga gtagtcttct acgatacggg cagaggccaa tagctccgca
     4801 acacttgctt catgaataga agagtcttgg cgcatatcga tactagctag gtagaaacca
     4861 aacgcttcga ccgcttcaag taattctgta aaatcacctt tcaatagcgc cattgattta
     4921 ttttcgacca aagattgttt gatggctaat aaatcagctt taaactcggc tacattacta
     4981 tagcgagcat ctgacggctt attgtgaact agataatctc ttgtatttgc aagtttcatc
     5041 tgaatatagt gaaaagcacg acgataaggc tcattttcac ggtagacaga actatcttca
     5101 gataaatccg ccagcatctt aaccgctgta gatacattta caatggaagt tgagagcgaa
     5161 aaattccgat agagtttata gagttgctca tcgtaataat tcataataac ttcacactga
     5221 gtcaaggcag acagcttcaa ggtctctgca gtaacaaatg gatttccatc acggtctccc
     5281 ccaatccaca tacccattgt aattggacga ggattattta agacgattcc tttctcagcg
     5341 gccaaacgtt tgtattcccg ctgcaactta gtgacagcct taataaagga agaattgtaa
     5401 tactccataa cgtttgtgat ttcgttggtt accttcaact tcttctcacg aatcatatcc
     5461 gtctgcatga taatttcaat gtaacaacgg agctcatctt cccatttgtt tttattgagc
     5521 aagcccaatt ttacatcgcg ataacgacga agcaactcat gaatatgctt ggttaaatca
     5581 agcatagact ggcgttgaac ctgagtagga tgggctgtca agactggaac aacattcaac
     5641 ttttcaagga tttcagctgc attttcttgt ttggaaacca tatcaattgt tgttgaaatc
     5701 ttaccaagat aatcttgatc aatattgttt tgatggttga tttcataggc caagtcaaca
     5761 tcttctgata tattaatcaa aagtggcaaa acagcaaagt atctagaaat aactgctagt
     5821 tcatcattat tcaactgact gataatagca atcaatgcct gataatcatc ctgacgagac
     5881 agttgagata attctacaat tttagcaaaa gtctctgcag gcatcatttg ggctgctact
     5941 tcttccaaaa tagatgttag aatcgttact tcttcacgga ttgcttcctt gttgttatag
     6001 ttttctaatt tttgaatagc catctcctac ctctttccta tctctaaatt agcgtacgct
     6061 ctatttcttc ttcaattaat cgacgttttt cactagcatc aatattcaaa acaaacccta
     6121 tcccgatgga aataatcaaa agactcgatc caccctgtga caagaagggg aaagttaccc
     6181 ccgtcgcagg aataattcct gaaattcctc cgatattgac aaatgtttga atcagaagca
     6241 tacctgccat tccaagtgcc atcatcgcat taaatggact acgagcacgg acgcctacaa
     6301 taataattcg aataatcaaa aagaacaata aggctagaat taaactagct ccgacaaaac
     6361 cgagttcttc aatgacaatc gaaaacgcaa agtcggtgtg ggcctctggt agatacccct
     6421 ttttctcaat cgaatttccc aagccacgtc caagccatcc accgttactc atcgcatagt
     6481 aagaatgagt caattgaaga cctgaattgg tggcattacc aaatggatca aaataggccg
     6541 cgaaacgacg agcaatataa ccaaagagcg gaattttttc caccgtttct acacccaaaa
     6601 tacgaatcgt ccctagaata actgttgagg cgaccacaat tcccaaaatc gctgttgaaa
     6661 accagcgata ggcaatccca ctcacactaa tcatcacgac cataatcagc acaataatcg
     6721 tcgcatttcc caagtctggc agtgtcgcaa ctagaccaag gaggagcaga ctgaccaccc
     6781 gccaatctgt aaactctttc ggaatccaac ttcctttaat caacgataca tagtcataag
     6841 tccgaatatc cgcctgttgt tttgcaaact catgtgccag ataccaaatg ataattaatt
     6901 tcaaatattc tgccggctgc aaggttcctg cgattggcag aggaatccag ccatgagccc
     6961 cgttaatcgg agtaaacaac cgagaaatag ctaacagaaa tacttctacc aaaataaccg
     7021 aatagataac ggctttcttg cgtaaaaaac ttaatttcat acgataaatc gtatagattg
     7081 ctaccaagct gacaatccag aatcctgcct ggttaatcac tgttctaaat ggatttctac
     7141 cattaataat ttgcgtagca ctggttgtcg aatagaccat gaccaaccca atcaccgata
     7201 agatgagata gggaatcagt atggagtaat tcaacaactg gcgtttgtca atcttcattg
     7261 cttatccaac cttcttcgaa tatagctctt attatagcat actttgtata aaaatactta
     7321 tcactttcta agttgctctg caaacattcg gaactaactt ttgtcgacaa gaaaaaggcc
     7381 gaagcctttc atatctattc aaatgtttca agataaaatt caatttcatc cccattcgca
     7441 actgtaaggt ctttcgcccc tttatcagcc atttggccat taactttata catccagtat
     7501 gtattggtac tcgtatcttg gctaacacca tcaatttctg ttatcaaacc attgtcttct
     7561 acaatgtcat ggtgttcttt aagcacatcc atgacactat caccttcttc cgcagtcact
     7621 tcctgacgat tctctttgtc cttggttgta atctgcaaag tgacttcgat agccgattca
     7681 ctctgtttct cagtagtgtt tgtacaagca gccaagaaga gcgagaagac aaccgtcaac
     7741 ataatactaa tttttttcat ttataaaatc tcctaaaaat ataatcaata attggataaa
     7801 acaaaactgt tgaagcagcg tgtaaactat caaagactag accattaagc cagaagacga
     7861 taggggaagt cccaaactgt gtagcagata aaaaacttat cgttagccca tacaaaaaga
     7921 caagaatccc cgccagaaga ctctgtagcc acaagggaat gt
//
LOCUS       DASFRC010000097         7937 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.097, whole genome shotgun sequence.
ACCESSION   DASFRC010000097 DASFRC010000000
VERSION     DASFRC010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7937)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7937)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7937
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.097"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            198..950
                     /locus_tag="U1087_001492"
     CDS             198..950
                     /locus_tag="U1087_001492"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002985521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEM4755961.1"
                     /translation="MSRKPIIAGNWKMNKNPQEAQAFVEAIAGKLPAGDKIEAAIAAP
                     AVDLNALLWFAKDSELKVAAQNCYFEDAGAFTGETSPKVLAEMGVNYVVIGHSERRDY
                     FHETDEDINKKAHAIFRNGLTPIICCGESLETYEAGKAVEFVGAQVSAALKDLTAEQV
                     ASLVIAYEPIWAIGTGKSATKDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVNPS
                     NVAEYMACPDVDGALVGGASLEAESFLALLNF"
     gene            complement(1003..1812)
                     /gene="yidA"
                     /locus_tag="U1087_001493"
     CDS             complement(1003..1812)
                     /gene="yidA"
                     /locus_tag="U1087_001493"
                     /EC_number="3.1.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-phosphatase"
                     /protein_id="HEM4755962.1"
                     /translation="MSIKLVAIDIDGTLLNSQHQITAEVHSAIQEAKKAGVKIVIATG
                     RPISGVQAILEELNLTEAGDYVITFNGGLVQDAATGEDIIKDTLTYEDYLDIESAARK
                     LRLPMHASTKEGIYTANRNIGKYTIYESTLVSAPIFYRTPEEMADKEIIKTMMVDEPE
                     ILDAAIPLLPTSLTEKYNVAKSAPFYLEITPKTVNKGQAIIHLAEKLGLTMDQTMAIG
                     DQENDRPMLEVVGNPVVMENGNPELKKIAKYITKSNDESGVAHALREWVLK"
     gene            complement(1802..3115)
                     /locus_tag="U1087_001494"
     CDS             complement(1802..3115)
                     /locus_tag="U1087_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEM4755963.1"
                     /translation="MIEKVFRDPVHNYVHVDHELIYKLINTKEFQRLRRIKQLGTTSY
                     TFHGGEHSRFSHCLGAYEIARRITQKFEDKYPQIWDTNESLLTMVTALLHDVGHGAYS
                     HTFERLFDTDHEEMTCAIITSPETEINALLKQVSPEFPDKVASVIKHTYPNKQVVQLI
                     SSQIDVDRMDYLLRDSYFTGANYGEFDLTRILRVIRPTENGIAFKESGMHAVEDYVLS
                     RYQMYMQVYFHPASRSMEVLLQNLLNRAKLLYTGEQEFFARTSPRLLPFFEHRIRLTD
                     YLSLDDGVMNTYFQSWIDGPDRILSDLAQRYINRKVLKSITFKAEEEEALDRLRSLVA
                     DVGFDPEYYTAIHHNFDLPYDIYRPNAEKKRTQIEIYRKDETLVELSSLSPIVHSLSG
                     TIHGDSRFYFPKEMLEETGIFAPQIADFNSHIHNDHFIIGESNEH"
     gene            3214..4101
                     /locus_tag="U1087_001495"
     CDS             3214..4101
                     /locus_tag="U1087_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEM4755964.1"
                     /translation="MNNQIILLTIQVFIVALILWMLYTILSYAKKHDISLKEKFWTGF
                     GIGYVTDLLDTLGIGTFATTTTMFKLTKLVEDDRKIPATMTTAHIIPVLVEALLFITI
                     VEVDMVTLIAMAAAAFTGAFVGAKVTQKWDTKKVQRILGILLIIAACFMVYRMITNPG
                     ADLTNEVKGLTGWKLAVGIAFDFMVGMLMSMGLGNYAPELIFFSLMGISPAVALPVMM
                     LNAAMIMTAGAKQFIQSGRVNWPGVPGIIVGGVLGVLTAAFFLSNLDINNLKILVVFI
                     AAYTGFTLLRSSFVTRIKK"
     gene            4113..4499
                     /locus_tag="U1087_001496"
     CDS             4113..4499
                     /locus_tag="U1087_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1934 domain-containing protein"
                     /protein_id="HEM4755965.1"
                     /translation="MDIHLRNEIDLDGQIEVVDQQFQVEVKEKDGNLYLIYSNDEAEK
                     VVIKCDEEELVMTRFSTPKSIMRFISGKEAIVTIPTPLGIQHFVTDTKRYQLNRSDQS
                     VQLQYELKGLENQQLFASYDLEISWK"
     gene            4975..7662
                     /locus_tag="U1087_001497"
     CDS             4975..7662
                     /locus_tag="U1087_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010922034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HEM4755966.1"
                     /translation="MSKEQKRDLFYTQSEEQVLSSMGSSLDGLSSDEASKRLADYGRN
                     ELDEGEKRTLLAKFLDQFKDLMIIILIAAAILTVITEGSHGLTDAIIILAVVILNAAF
                     GVYQEGQAEAAIEALKNMSSPVARALRDNHVVEVDSKDLVPGDIVLLEAGDVVPADMR
                     LLEANSLKIEEAALTGESVPVDKDLSAVLAEDAPIGDRVNMAYQNSNVTYGRGLGVVT
                     NTGMYTEVGYIAGMLANADETDTPLKQNLHQLSKVLTYAVLVIAAVTMAVSVFVRGEG
                     ILPALMTSVALAVAAIPEGLPAIVTVVLSLGTQVLAKRNSIIRKLPAVETLGSTEIIA
                     SDKTGTLTMNQMTVEKVYTNGQLVDAKEALDASNTTLRVMNFANDTKVDPTGKLIGDP
                     TETALVQFGLDQNFDVREVLVSEPRVAELPFDSTRKLMSTVHQQAAGNFFVAVKGAPD
                     QLLKRVTQIEENGTIRPITDADKQAILATNKDLAKQALRVLMMAYKYVDAIPELESDV
                     VENDFVFSGLVGMIDPERPEAAEAVRVAKEAGIRPIMITGDHQDTAEAIAKRLGIIDP
                     NDTEDHVFTGAELNELTDEEFQKVFKQYSVYARVSPEHKVRIVKAWQNDGKVVAMTGD
                     GVNDAPSLKTADIGIGMGITGTEVSKGASDMVLADDNFATIIVAVEEGRKVFSNIQKT
                     IQYLLSANTAEVLCIFLATLFGWDVLEPVHLLWINLVTDTLPAIALGVEPAEPGVMQH
                     KPRGRNSSFFSGGVLSSIIYQGILQTALVLGVYGFALLYPEHAGDNHAIHADALTMAY
                     VTLGLIQLVHAFNVKSVYQSIFTVGPFKNKLFNWSIVAAFLLLMATVVIPGFNTFFKV
                     SILTPTQWMVTVIGSGLMVVVVEIVKFVQRKLGLDEKAI"
BASE COUNT         2214 a         1471 c         1798 g         2454 t
ORIGIN      
        1 tgtcaagcaa aatgttaatt ttttataaca ttttacaacg cgggaagaat tattgtcatc
       61 aatgtgctgc tagaggacta atttaacttt caatgattcc cagagacttt tatcagtatt
      121 tcttataatt ggctttaatt atagatgaaa ctatgctata atggagtttg taaaataaaa
      181 aagaagaggt atgtgaaatg tcacgtaaac caatcattgc tggaaactgg aaaatgaaca
      241 aaaaccctca agaagcacaa gcttttgttg aggcgattgc aggtaaattg cctgctggtg
      301 acaagattga agcagctatc gcagctccag ctgtagattt gaacgctctc ttgtggttcg
      361 ctaaagattc tgaattgaaa gttgcagctc aaaactgcta ctttgaagat gctggtgcct
      421 tcactggtga aacatctcca aaagtattgg ctgaaatggg tgttaactat gttgttatcg
      481 gtcactcaga gcgtcgtgat tacttccacg aaactgatga agatattaat aaaaaagctc
      541 atgcaatctt ccgtaacggt ttgactccaa tcatctgttg tggtgagtca cttgaaactt
      601 acgaagctgg caaagcagta gaatttgtag gtgcacaagt ttctgcagct ttgaaagact
      661 tgactgctga acaagtagca tcacttgtta ttgcttacga gccaatctgg gcaatcggta
      721 ctggtaaatc agctactaaa gacgatgcac aaaacatgtg taaagctgtc cgtgacgttg
      781 ttgctgctga tttcggtcaa gaagttgcag acaaggttcg cgttcaatat ggtggttctg
      841 taaacccatc aaacgttgct gaatacatgg catgtccaga cgttgatggt gcgcttgttg
      901 gtggtgcttc acttgaagca gaaagcttct tggcattgtt gaacttctaa taacaaaagc
      961 atcggatttt gaattcgatg ctttttttga tattttaaga ggctatttca gtacccattc
     1021 tctcagagcg tgggctacac cgctctcatc atttgacttc gtaatgtatt tggcgatttt
     1081 cttcaattca ggatttccgt tttccatgac aacaggatta ccaacaactt ccaacattgg
     1141 acggtcattt tcttggtcac cgatggccat ggtttgatcc attgttagtc caagcttctc
     1201 agctagatga atgatagctt gtcccttgtt aacagtttta ggggtgattt ccaaataaaa
     1261 tggtgctgat tttgctacgt tgtacttctc agtcaagctg gtcggtagaa gtggaatagc
     1321 agcatcaaga atttctggct catcaaccat cattgttttg atgatttcct tatcagccat
     1381 ttcttcagga gtgcgataga aaatgggtgc acttactagt gttgattcgt aaatggtgta
     1441 tttaccgatg ttacggttgg cagtatagat accttccttg gtgctggcat gcattgggag
     1501 cctgagttta cgggcagcag attcgatgtc gagataatcc tcataagtca aggtatcttt
     1561 gataatatct tcaccagttg ctgcatcttg gactaagcca ccgttaaaag tgatgacgta
     1621 gtcacctgct tctgtaagat tgagttcttc taaaattgct tgaacaccgg aaatggggcg
     1681 accagtagca ataacaattt taacgcctgc tttttttgct tcttggattg ctgagtgtac
     1741 ttcagctgta atttggtgtt gactatttag tagtgtacca tcaatatcga tggcgacaag
     1801 tttaatgctc atttgattct ccaattataa aatgatcgtt atgtatgtgg ctgttaaaat
     1861 cagctatttg aggtgcgaaa attcctgttt cttctaacat ttcttttggg aaatagaagc
     1921 ggctatcgcc atggattgtg cctgataagg aatggacaat tggtgataga gaggatagtt
     1981 ctaccaaggt ttcatctttg cgataaatct caatttgagt ccgtttcttt tctgcattcg
     2041 gtcggtaaat gtcatacggc aaatcaaagt tgtggtgaat agcagtatag tattctgggt
     2101 caaacccgac gtctgcgacc aggctacgca ggcggtccaa agcttcctct tcttcggcct
     2161 tgaaagtgat ggatttgagc actttcctat tgatatagcg ctgggctaag tcagataata
     2221 tacgatctgg tccatctatc catgattgaa agtaagtatt cataactcca tcatccagac
     2281 tgaggtagtc ggttagacgg atacgatgct caaaaaaagg taatagccga ggtgaagttc
     2341 gtgcaaaaaa ctcctgttca ccagtatata gtagtttggc acgattgagt aaattctgca
     2401 ataggacttc catagagcgg cttgctggat gaaaatagac ttgcatgtac atctggtagc
     2461 ggctgagaac gtagtcttct actgcatgca taccagattc tttgaaggca attccatttt
     2521 ctgtcgggcg aatgacacgt aatatcctag ttaggtcaaa ttcaccatag ttcgcacctg
     2581 tgaagtagga atctcgtaat agataatcca tccggtcaac atcaatctgg ctcgaaatga
     2641 gttgaacgac ctgtttattt ggataggtgt gtttgataac actagcaacc ttgtctggaa
     2701 actcaggtga aacttgtttc aacagagcat tgatttccgt ttctggacta gtaataatag
     2761 cacaggtcat ttcctcatgg tctgtatcaa atagacgctc gaaggtatga gaataggctc
     2821 cgtgtccgac atcatggagt agcgcagtaa ccatggtcag tagggactca tttgtatccc
     2881 agatttgtgg atacttgtct tcaaattttt gagtaatccg tctggcgatt tcgtaggcgc
     2941 caaggcagtg cgaaaagcgg ctatgctcgc caccatggaa ggtataggaa gtagtcccta
     3001 gttgcttgat gcggcgtagt cgctgaaatt cttttgtatt gataagttta taaatcagct
     3061 catgatcaac atgtacatag ttatgaactg gatcgcgaaa tactttttct atcatagttt
     3121 cattataaca aaaaagggag ataaattcct gatttttcta aaacacaagg atattgctat
     3181 gtacccaatg gaatcttttg gtataatgga gaaatgaata atcaaattat cttattaact
     3241 attcaggtct ttattgtagc cctgattctt tggatgcttt acacaattct atcctatgct
     3301 aaaaagcacg atatttctct aaaagagaaa ttttggacag ggtttggtat cggttatgtt
     3361 actgatttgc tagacacctt ggggattgga acctttgcaa cgacaaccac tatgtttaaa
     3421 ctgacaaagt tggtggaaga cgatcgtaaa attcctgcga ccatgacaac ggcgcacatc
     3481 ataccagtct tagtagaggc gctattgttt attacgatag ttgaggttga tatggtcact
     3541 ctgattgcta tggcagcagc ggcatttacg ggtgcctttg ttggtgccaa ggtaactcaa
     3601 aaatgggata caaagaaagt tcaacgaatt cttgggattt tactaattat tgcagcctgt
     3661 ttcatggtct atcgcatgat tactaatcct ggcgcagatc ttaccaatga agtaaagggc
     3721 ttaactggtt ggaaactggc tgttggtatt gcctttgatt ttatggtggg aatgctgatg
     3781 agtatgggac tgggtaacta tgctcctgag ttaattttct tctcattgat gggaattagt
     3841 ccagcggttg ctcttccagt tatgatgttg aatgctgcta tgattatgac agctggtgcc
     3901 aagcagttta tccaatcagg acgagtaaac tggccaggag ttccaggaat cattgtcggt
     3961 ggggtgctag gtgttttgac agctgctttc ttcctatcaa atttggatat taataatttg
     4021 aaaattttag ttgtcttcat tgcagcgtat acaggcttta ctctgcttcg ttcatccttt
     4081 gttactagga ttaaaaaata gtaggaggaa ttatggatat tcatttacga aatgaaattg
     4141 atctggacgg gcagattgag gtagtggatc agcaatttca agtggaagtt aaggaaaaag
     4201 atgggaatct ttatctcatt tatagtaacg atgaagctga aaaagttgtc ataaaatgtg
     4261 acgaagaaga gttagtgatg acacgttttt ccactccgaa gtctattatg cgattcattt
     4321 ctggtaaaga agctattgtg accattccta caccgttagg aatccagcat tttgtgaccg
     4381 atacaaaacg ttaccaatta aaccgttcgg atcaaagtgt ccagttgcaa tatgaattaa
     4441 agggattgga gaaccagcag ctttttgctt cctatgattt ggaaatctcg tggaaataat
     4501 ctcttatttc cagaaaaata ttcttgaatt tcttgggatt tttgatataa tagttaacaa
     4561 atcgagggag tagctagcgg aaaattccgt gatattgtcg tcaatccgac ttgtttccgg
     4621 caatatatta aatagcgaga cttgttttag aacctgtctt cgcaagtaag gtatttttag
     4681 ataagagata gttttttgtc tatcaaggca gttttttgaa ggaatactga ctgtatttca
     4741 aaaaaaacta atactcaatg aaaatcaaag tcaggctagg cgacgccgat gcagattgaa
     4801 ctaaagttca tcaattcaag tcaacaacgc ctgagtttga ttttcgaaga gtataaagat
     4861 gagtgacaga aaactagccc tagatagaag tgccgagctg tgaagagagg ttctcattaa
     4921 acaggtctct tttttatttg ttaggtaaaa aagggaccga gaaggagaag gaaattgtca
     4981 aaagaacaaa aacgcgattt gttttataca cagagcgaag agcaagtatt gtcaagcatg
     5041 gggtcttctt tggacggttt gtctagtgat gaggcaagca aacgtctagc agactacggt
     5101 cgtaacgaat tggatgaggg tgaaaaacgc acactcttag ctaaattctt ggatcagttc
     5161 aaagacttga tgattatcat tttgattgca gcagcaatct tgacggtgat tacagaaggt
     5221 tcacacggtt tgacagatgc cattatcatc ttggccgtgg ttatcttgaa cgctgccttt
     5281 ggtgtttatc aagagggtca agctgaggca gctattgagg cgctaaaaaa catgtcaagc
     5341 ccagttgcgc gtgcgcttcg tgacaatcat gtagtcgaag ttgattctaa agacttggta
     5401 ccaggtgaca tcgtcttgct tgaagcaggt gatgttgtcc ctgccgatat gcgtttgttg
     5461 gaagctaact ccctcaaaat cgaagaagca gctcttacag gtgagtctgt accagttgat
     5521 aaagatttgt cagcagtttt ggctgaagat gcaccgatcg gtgaccgtgt caacatggcc
     5581 taccaaaact caaacgttac ttacggacgt ggtcttggtg tggttacaaa tacaggtatg
     5641 tacacagagg ttgggtacat cgctggcatg cttgctaatg ctgatgagac tgatacacca
     5701 ttgaaacaaa acttgcacca gctatcaaaa gtcttgacat acgcagttct tgtaattgca
     5761 gcggtaacga tggctgtttc agtcttcgta cgtggtgaag gtatcttgcc tgctcttatg
     5821 acttctgtag ctcttgcggt tgcggccatt ccagaaggtt tgccagctat tgtaacggtt
     5881 gtcctttcac ttggtactca agtattggct aagcgtaact cgatcatccg taagttgcct
     5941 gctgttgaaa cacttggttc aactgaaatc atcgcatcag ataaaactgg tactttgact
     6001 atgaaccaga tgactgttga aaaagtctat acaaacggtc aattggtgga tgctaaagaa
     6061 gctttggatg caagcaatac aacgcttcgt gttatgaact ttgccaacga tacaaaagtt
     6121 gacccaactg gtaaattgat cggtgaccca actgaaacgg cacttgttca atttggtttg
     6181 gatcaaaact ttgacgttcg tgaagtcttg gtatctgagc ctcgtgtggc tgaattgcca
     6241 tttgactcaa cacgtaaatt aatgtcaact gttcatcaac aagctgctgg aaacttcttt
     6301 gtagctgtta aaggtgcccc agaccaattg ctcaaacgtg taacgcaaat tgaagaaaat
     6361 gggacaattc gtccgattac cgatgcggat aaacaagcca ttcttgccac taacaaggac
     6421 ttggctaaac aagcccttcg tgtcttgatg atggcataca agtatgttga tgctattcct
     6481 gaattggaat ctgacgttgt tgaaaacgac tttgtcttct caggtttggt tggtatgatt
     6541 gaccctgagc gtcctgaagc ggcagaagct gttcgtgttg ctaaggaagc tggtatccgt
     6601 ccaatcatga ttacgggtga ccaccaagat acagctgagg cgattgcaaa acgtcttggt
     6661 atcatcgatc caaatgatac agaagaccat gtatttacag gtgcagagct caacgaattg
     6721 acggatgaag agttccaaaa agtcttcaaa caatactcgg tatacgctcg tgtatctcca
     6781 gaacataagg ttcgtatcgt taaggcttgg caaaatgatg gtaaggttgt tgccatgact
     6841 ggtgacggtg ttaacgatgc gccatcactt aagacagccg acatcggtat cggtatgggt
     6901 atcactggta cggaagtttc gaaaggtgcc tctgatatgg tccttgcaga tgacaacttt
     6961 gcaactatca ttgtggcggt tgaagaagga cgtaaggtct tctcaaacat ccaaaaaacc
     7021 atccagtatc tcttgtcagc caacactgct gaggtattgt gtatcttcct tgctaccctc
     7081 tttggttggg acgtattgga gccagttcat cttctttgga tcaatttggt aacagataca
     7141 cttccagcga ttgcccttgg tgttgaacct gctgaaccag gtgttatgca gcacaaacct
     7201 cgtggtcgta actcaagctt cttctcaggt ggtgtcttga gttcgattat ctatcaaggt
     7261 atccttcaaa cagcacttgt cttgggcgta tatggttttg cacttcttta cccagagcat
     7321 gctggagata accatgccat tcatgcggat gctcttacga tggcatatgt tactcttgga
     7381 ttgattcagt tggtgcatgc cttcaacgtt aagtctgttt accaatctat ctttaccgtt
     7441 ggtccattca agaacaaact ctttaactgg tctatcgtag ctgccttctt gctcttgatg
     7501 gcgactgttg tgattccagg attcaatacc ttcttcaagg tatctatctt gacaccaact
     7561 caatggatgg taacagtaat cggttcaggt ctcatggttg tcgttgtaga aattgttaag
     7621 tttgttcaac gtaagttggg attggatgaa aaagctatct aatatagtta ttcggcttat
     7681 cttttattac ttcgttaact cgccttgccg tacttcagta cagcctgcgc ctcgttgcct
     7741 tgtactaaaa gcaaactgaa gactatatca tttgaaaaag ctcagattta gtggtctgag
     7801 cttttttctg tactgataat gtattttggg aagatttctt gtcccaataa agtaatggct
     7861 agtgctagta tgaggaggat ggttttgaca agagttggta agttaaacag taaggctatt
     7921 ggtacgatag ccaagct
//
LOCUS       DASFRC010000098         7925 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.098, whole genome shotgun sequence.
ACCESSION   DASFRC010000098 DASFRC010000000
VERSION     DASFRC010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7925)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7925)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7925
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.098"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(462..1703)
                     /locus_tag="U1087_001498"
     CDS             complement(462..1703)
                     /locus_tag="U1087_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HEM4755967.1"
                     /translation="MRKFLLTLTTVIALFFTSTPILAEDFSVAAKHAIAVEVSSGKIL
                     YEQDAETKASIASISKTLSIYLVYEAMAKGEITLDTMVDISDYPYSLTSNTELSNVNL
                     DERSYSVRDLLNASLITSSNSAIIALAEKIAGSEAAFVDRMKAKVQEWGITDAKIVNV
                     SGLDNTDLGENIYPGSSPEDVNMFSALDVAIIARRLILDYPQVLDITSLNAYDFGGYT
                     YYSTNQMLSDGTHARGGVDGLKTGTSNSAGSSFLATTQQAGMRIITVVLNATDGLTSP
                     ENRFVATNDLMNYVYSNFSLVTLVKKGEAFEDSKINVFNGEKETSPVVAAADLTVVQR
                     NQTDNVPTATFTTDIKEIDAPLKAGTLVGKLQLKDQDLIGKGYISEQASVDMIIPSDM
                     KEASWPFSWWNQFVRYVNEKL"
     gene            1918..3711
                     /locus_tag="U1087_001499"
     CDS             1918..3711
                     /locus_tag="U1087_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM4755968.1"
                     /translation="MKKTTKLFALAGITLLSASVLAACGAKSSSSSSEQNLSFPSEVK
                     QDGTAVADAQLKYAFVSATTSSGLLIDELTENTTDSTFGGMVDISMFGYDGDRKLDDS
                     GLAKAEFDVKGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGVRFDDRFL
                     NIVGMEEYVAGTASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDI
                     PVADWEKSEYSRTSKLVGMGPWKIKEIVNGESITYVPNEYFFKGTTPKTSSLKIDIVS
                     PDTIVSEMKAGNYDIADMPVDQLDSYKDASNLNIVGSLDSAYEYISFNFGKYDESAKK
                     NVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPANSLIISFFGDIHDSELEGY
                     SYDPEKAKKLLEEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWK
                     EVGLNVELYTGRTVEGKSFYNSVQANDAAIDMYAGGWSTGYDPNPTGLWGPIAAFNMS
                     RFVSDENTKLLNAISSTESFDDKKNVENYKAWQKYAHEQAFAIPTFESESITALNKRV
                     KNYDSNYGSASGKGIALENIELTADKGVAAE"
     gene            4089..5087
                     /locus_tag="U1087_001500"
     CDS             4089..5087
                     /locus_tag="U1087_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4755969.1"
                     /translation="MATEKPLLDIKDLHVGFRIGDDYFDAVDGVDISLQKNEILAIVG
                     ESGCGKSTLATTIMGLHNPLNTKITGSIQYNDIELIGMDEAKYNTVRGNDIGMIFQDP
                     LASLNPLMTIGAQIDEALFYHTDLDTNARTERVLELLAQVGIPNPKRTFKQYPHELSG
                     GMRQRIIIAMALSCKPPIIIADEPTTALDVTIQAQILDLLNDIQAETGSGIILITHDL
                     GVVAETADRVAVMYGGQFVEVAPVEELFTNPKHPYTRSLLKSNPQSGSEGGDLHVIEG
                     IVPPITKMVRKGCRFAPRIPWIGAEAHEENPSMHEVGPNHFVRCTCHETFYFEGEA"
     gene            5090..6031
                     /locus_tag="U1087_001501"
     CDS             5090..6031
                     /locus_tag="U1087_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4755970.1"
                     /translation="MGFIEVKDLKVHYPIRSGFFNRVTDHVYAVDGVNIEFEEGKTYG
                     LVGESGSGKSTIGKAIIGLERATSGQIIYEGQDVTNKSRGKKGNFNRDVQMIFQDSLS
                     SFNPKKRILDIIAEPIRNFDRLSPDEEKKKVLQLLDTIGLNEEALIKYPHEFSGGQRQ
                     RIGVARALASNPRLIIADEPVSALDLSVQAQVLNYMKRIQDEFKLSYLFISHDLGVVQ
                     HMCDELFIMYRGRFVETGNKNDIYNNPQHIYTKRLLSAIPTIDPLNRLKNKEKRLAAE
                     KEYQEMQGQYYDENGRVYDLRSFSETHQVALPEGGQN"
     gene            6033..6989
                     /locus_tag="U1087_001502"
     CDS             6033..6989
                     /locus_tag="U1087_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010750774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM4755971.1"
                     /translation="MWKTVLRRLLMMIPQIIILSVIAFFVAKMMPGDPFTGLIDPNID
                     PAIIEQKRIAAGYYDPIPVQYFRWVGNLLQGDFGQSVIFKQPVVDVIMQRLNNTIWLS
                     LLTMVLTYLIALPLGMIAGRYQNSLADKIIGVYNFLTFSTPTFVFAILMLWMFGFSLG
                     WFPTRGSIDGGVEGFAAILSRLHHMILPAITMAILSTTVTIQYLRTGIIDAKSQDYVR
                     TARAKGVPERVVYNRHIFRNSILPIASFLGYELTGLIGGSIFIENIFTYPGIGQLFYN
                     SISSRDYSVILALLLIFGMGTLLGTLISDIIMSIVDPRIRVK"
     gene            7003..7905
                     /locus_tag="U1087_001503"
     CDS             7003..7905
                     /locus_tag="U1087_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM4755972.1"
                     /translation="MSKENKKQVQSASTPPGGFRVIAREFMKDRLALTSLIILVTVLL
                     AVFIGALLLDQEQVMKVNLLGRYLEPGVNGYILGTDEGGKDIFGQLIIGARNSIIIGF
                     TITIITSIVGISIGLISGYYGGRLDGFLMRIVDFIMILPVTMLIIVFVTVIKNYTIYH
                     FILIMSAFYWTAKARLFRTRTLSEASLDYVNASKTLGTSDFMIMFREILPNLSSLIIV
                     NLTLNFAGNIGIETSLTYLGFGLPSTVPSLGTLIANARNADILENKTWIWLPAAIFIL
                     VMMLCINYVGQAFQRAADAKQRLG"
BASE COUNT         2347 a         1427 c         1691 g         2460 t
ORIGIN      
        1 aaatagagag cgacggaagt cgctcttctt tgtaaattta gcaaactagt ctgggagact
       61 agattaccct actgacatcg cttccttaca ggaagcgaca tataatacgg agttccgcag
      121 gaactctctc caactcaatc tccaaccgag gttggagata aagagcgacg gcagtcgctc
      181 ttctttataa ccttataaca atttcgtacc ttccacgctc gtcgttttct gtaagaaaac
      241 gatatgtagc taggagtttc gtagaaactc tctccaaccg aggttggaga gagagagcga
      301 cggtagtcgc tcttctttgt aattcagata accttgtgac tcaaatagct ttaaagccat
      361 tcaaacctgt caaactcccc actgaagtag tagataagga atagcggatg tcactctgcg
      421 ataaaaaata gtatgtcgaa aatcgttcga catactattt tttataattt ttcattgaca
      481 tagcggacaa attgattcca ccaagagaaa ggccaggacg cttctttcat atcgctaggg
      541 ataatcatat cgacactagc ttgctcggaa atataacctt ttccaatgag atcttgatct
      601 ttcagttgca gtttgccaac cagggtccct gctttgaggg gagcatcaat ttcttttata
      661 tccgttgtga aagttgcggt ggggacatta tcagtttgat ttcgttgaac aacagttaaa
      721 tctgctgctg caacaacagg acttgtttct ttttcgccat tgaaaacatt tattttacta
      781 tcttcaaaag cttcaccttt ttttactagc gtaacaagcg aaaagttaga ataaacatag
      841 ttcattaaat catttgtcgc gacaaatcga ttttctggag aggtcagccc atcagtagca
      901 ttcaatacta ctgtgataat gcgcatacca gcttgttgag ttgttgcaag aaaacttgaa
      961 cctgctgagt ttgaggtccc tgtttttaag ccgtcaaccc ctccacgagc gtgagtacca
     1021 tcgcttagca tttggttggt gctatagtaa gtgtagccac caaaatcgta ggcgtttagt
     1081 gaggtaatgt cgagtacctg aggataatcg agtatcaatc gtcttgcaat gatagcaaca
     1141 tctagggctg aaaacatatt tacatcttca ggactggagc ctggataaat attttcaccc
     1201 aagtcggtat tgtctagtcc ggatacattg acaatctttg cgtcggtaat tccccattct
     1261 tggacttttg ctttcattcg atccacgaat gcagcttcgc taccggctat tttttctgcc
     1321 agagcaataa tagcactatt ggatgatgtt attaaagaag cgtttaatag gtctcttact
     1381 gaataggaac gttcatcaag gttgacgttg cttaattctg tattagaagt gaggctatag
     1441 ggataatcag aaatatctac catagtatct aaagtgattt caccctttgc cattgcttcg
     1501 tagaccaggt aaatgctcaa tgtcttactg atagaagcaa tgcttgcttt ggtttcggca
     1561 tcttgctcat acaagatttt gccgctactt acttcaactg cgatagcatg cttagctgca
     1621 acagaaaaat cttctgccaa aataggtgtg gaagtgaaaa aaagagcaat aactgtagtg
     1681 agtgttagta aaaatttacg cataatcatt cctttggctg ttattttgtt ctattatatc
     1741 acaagaaatg tgagaaaaat ttggaaaaaa tatgtaaaaa ataagaaaat gctgaaaaat
     1801 tatgttttta caaaattttc tgacaaaaaa gactttattt aagaaaattt tatgatataa
     1861 ttatttttat aagacatagt aatcagtgtc aaagaaaaag aaaaacagag gtgttttatg
     1921 aaaaagacaa caaaactctt tgccttagca ggtatcacac tcttatctgc atctgtttta
     1981 gcagcttgtg gtgctaagtc gtcatcaagt tcatcagaac aaaacttgtc attcccatct
     2041 gaagtaaaac aagatggaac agcagtcgca gatgctcaat tgaaatatgc atttgtttca
     2101 gctacaactt catcaggtct cttgattgac gagttgactg aaaatacaac tgactcaaca
     2161 tttggtggaa tggttgatat ttcaatgttt ggttacgatg gagatcgtaa gttagatgat
     2221 tctggtcttg ctaaagctga atttgatgta aaaggtaaga aaatcactgt tagtttgaca
     2281 ggtaaagatt acaagtggtc agatggtgag ccatttacaa tcaatgacta catctttact
     2341 atcaagtcaa tggcaagcaa agactataca ggtgttcgtt ttgatgatag attcttgaac
     2401 attgtgggta tggaagagta tgttgcagga acagcatcag acatctctgg tattaagaaa
     2461 gttgacgact acacagtaga attgactgta aaagaaatgt cgccttcaat gatgtatgcg
     2521 ggtggtgatg tcccagctta tatccaacca gaacatatct ataaagatat ccctgttgca
     2581 gactgggaaa agagcgagta ctcacgtaca tctaaacttg ttggtatggg accttggaaa
     2641 atcaaggaaa tcgtaaacgg tgagtctatc acttacgtac caaacgaata cttcttcaaa
     2701 ggtacaacgc caaaaacaag ctcattgaag attgacatcg tatctccaga tactattgtt
     2761 tctgaaatga aagctggtaa ctatgacatc gcagatatgc ctgttgacca gttggattca
     2821 tacaaggatg cttctaactt gaatatcgtt ggttctttgg actcagctta tgaatacatt
     2881 tcatttaatt ttggtaaata tgacgagtct gctaagaaaa acgtcatgga tgaaaatgct
     2941 aagatgaatg atgtgaaact tcgtcaagca attgcctatg cgattgatac taagacagct
     3001 ggtgagtcat tgtacaatgg tctttaccac cctgcaaact cattgattat ctcattcttc
     3061 ggcgacattc atgattcaga gttggaaggc tattcatacg atcctgaaaa agcgaaaaaa
     3121 ctcttggaag aagctggcta caaagacgta gatggcgatg gtatccgtga aggtaaagat
     3181 ggtaaagagt tcaagattac ctttgcagct cgtaaacgta cggaagcaaa cgaagcactt
     3241 gtacaacaat acattgcttg gtggaaagaa gttggcttga acgttgaact ttacacagga
     3301 cgtacagttg aaggtaagtc gttctataac tcagttcagg ctaatgatgc tgctattgat
     3361 atgtatgctg gtggatggtc aacaggttac gatccaaacc caacaggact ttggggtcca
     3421 atcgcagcct tcaacatgtc acgtttcgtg tctgatgaaa atactaagtt gttgaatgca
     3481 atcagctcaa cagaatcatt tgacgataag aaaaatgttg agaactataa ggcttggcaa
     3541 aaatatgctc acgagcaagc atttgctatt ccaacatttg aatctgagtc aatcacagcc
     3601 cttaacaaac gtgtgaaaaa ctatgattct aactatggtt cagcttcagg taaaggtatc
     3661 gctcttgaaa atatcgaact tacagctgat aaaggtgtag cggcagaata gttttataaa
     3721 gaagataata gaatctgaaa aagccaactt gcttggcttt tttcagattg ctattggaat
     3781 tttctgataa ttatggtata gtagactcag tacacaaaaa atgagtcact actaacaaaa
     3841 actcaagatg gatcacatta acctactcaa tttctaattg agacagtaat agggatggtc
     3901 ttgatttatg attggatata gtacattttt tacttctggg taaccgctat caaacgataa
     3961 ttgatagaaa tatgttattc tagagtagtt atataaagtc agttaatcaa acattatatg
     4021 aacttgataa tcgtaaggat attgaattga ttgagcttga ttagctggca cataaaggag
     4081 gaaaaagcgt ggctaccgaa aaaccgcttt tagacattaa agatttacac gtcggtttcc
     4141 gtattggaga tgattatttt gacgctgttg acggtgttga catctcattg caaaaaaatg
     4201 aaattttggc aattgtaggg gaatctggtt gtggtaaatc aactttggca acgaccatta
     4261 tgggcttgca taaccctttg aataccaaaa tcacaggaag tatccagtac aatgatattg
     4321 aattgattgg tatggatgaa gccaagtaca atacggtacg tggtaatgat attggtatga
     4381 ttttccaaga tcctttggct tctttgaatc cattgatgac gattggtgca cagattgatg
     4441 aggcgctgtt ctatcacact gatttggata ccaatgctcg tacagagcga gttttggaac
     4501 tcttggctca ggtaggtatt ccaaatccta agcggacatt taaacagtat ccacatgagc
     4561 tttcaggtgg tatgcgtcag cgtatcatta ttgcgatggc cttgtcttgt aaaccgccaa
     4621 ttattattgc ggacgaaccg acaacagcct tggatgttac aattcaagca caaatcttgg
     4681 atctcttaaa tgatattcaa gcggagacag gttcgggtat tattttgatt acccatgact
     4741 tgggagtagt tgcagaaact gctgatcgtg tggctgtcat gtacggtggt cagtttgtcg
     4801 aagtagcgcc agtagaagaa ctctttacca atccaaaaca tccatataca cgttcgctct
     4861 tgaagtcaaa tcctcaatca ggtagcgaag gaggcgatct tcatgttatt gaaggtattg
     4921 tgccgccgat tacaaaaatg gttcgtaagg gttgccgttt tgctccacgt attccgtgga
     4981 ttggagcaga ggctcatgaa gagaatccga gcatgcacga ggtaggtcca aatcactttg
     5041 ttcgttgtac ctgccatgag acattctatt ttgaagggga ggcctaatag tgggatttat
     5101 tgaagtaaaa gatttaaaag tccattatcc aattcgtagt ggcttcttta accgtgtgac
     5161 ggatcatgtc tatgctgtcg atggcgttaa tattgagttt gaagaaggaa aaacctatgg
     5221 tttggtaggt gagtcaggtt ctgggaaatc gaccattggt aaggcaatta tcggtttaga
     5281 gcgtgccact tctggtcaga ttatctatga aggacaagat gtaaccaaca aatcacgtgg
     5341 taaaaaagga aactttaatc gtgatgttca aatgattttc caagattctc tttcaagttt
     5401 taacccgaaa aaacgtattt tggacatcat tgcagaacca atccgtaact ttgaccgttt
     5461 atctccagat gaagaaaaga aaaaagttct tcaactcttg gatacaatcg gtctaaatga
     5521 agaagctctg attaaatatc ctcacgaatt ctcaggtggt caacgccaac gtatcggtgt
     5581 tgctcgtgct ttggctagta atcctcgttt gattattgca gatgagccgg tttctgcctt
     5641 ggatttgtct gtgcaggcac aggtcttgaa ttatatgaaa cgtatccaag atgagtttaa
     5701 gctcagctat ctctttattt cccatgacct cggtgttgtg caacacatgt gtgatgaatt
     5761 gttcatcatg tatcgcggac gtttcgtaga aacaggaaat aagaacgata tttataataa
     5821 tccacaacac atttatacta aacgtttgtt gtcagctatt ccaacgattg acccactcaa
     5881 tcgattgaag aataaagaaa agcgtttggc tgctgaaaaa gaatatcaag aaatgcaagg
     5941 tcaatactat gatgaaaacg gtcgtgtgta cgatttgaga tccttctcag aaactcatca
     6001 agtagccctt ccagaaggag gtcagaacta agatgtggaa aacagtatta cgtcgtttac
     6061 tcatgatgat tccgcagatt attattttga gtgtcattgc gttctttgtt gcgaagatga
     6121 tgccggggga tccctttaca ggattgattg accccaatat tgatccagca atcattgaac
     6181 aaaaacggat tgcggcaggt tattatgacc caatccctgt tcagtatttc cgttgggtag
     6241 gcaatctttt gcaaggagat tttggtcaga gtgttatttt taaacaacca gttgttgatg
     6301 ttatcatgca acgtttaaac aacactattt ggttgtcttt attgacgatg gtgttgactt
     6361 atttgattgc ccttccattg gggatgattg caggtcgtta ccaaaactcg cttgcagata
     6421 aaatcattgg cgtgtataac tttttgacat tttcaactcc aactttcgtt tttgctatcc
     6481 ttatgctttg gatgtttggc tttagtttgg gttggttccc aacacgtggg tcgattgacg
     6541 gtggtgtaga aggatttgca gccattctca gtcgcttaca ccatatgatt ctgccagcga
     6601 ttacaatggc aattttgtca acaacagtaa ctattcaata tcttcgtacg gggattatcg
     6661 atgcgaagag tcaggactat gttcgtacag ctcgtgccaa aggtgttccc gagagagttg
     6721 tttataaccg tcatatcttc cgtaattcta tcttgccaat tgcatctttc ttgggctatg
     6781 aattgacagg attgattggt ggttctatct tcattgaaaa tattttcact tatccaggta
     6841 tcggtcagtt attctataac tctatttcta gtcgtgacta tagtgtcatc ttggctttgt
     6901 tgttgatatt tggtatgggt accttgttgg ggacattgat ttcagatatt atcatgagta
     6961 tcgtggatcc acgtatccgt gtgaaataga aggaggagta aggtgagtaa agaaaataaa
     7021 aaacaagtac aatctgcttc aactcctcca ggtggcttcc gtgtcatcgc gcgggagttt
     7081 atgaaggatc gacttgcatt gacctcatta attatcttag tgacggttct cttggcagtc
     7141 tttatcggag cgcttctgtt ggatcaagaa caagttatga aagtcaacct tttgggacgt
     7201 tacttggaac caggtgttaa cggctatatc ttggggacag atgaaggtgg taaagatatc
     7261 tttggtcagc tgattatcgg tgctcgtaac tcgatcatta tcggttttac cattacgatt
     7321 attactagta ttgttggtat ctctatcggt ctgatttctg gttattacgg tggtcgtttg
     7381 gacggattct tgatgcgtat tgtcgatttc atcatgattt tgccagtgac tatgttgatc
     7441 attgtgttcg tgacagttat caagaactat acgatctatc acttcattct catcatgagt
     7501 gccttttatt ggacggccaa ggctcgtcta ttccgtacaa ggactttgtc agaggcaagc
     7561 ttggattatg tcaatgcatc aaaaacattg ggaacaagcg acttcatgat tatgttccgt
     7621 gaaattttac caaacttaag ttcattgatt atcgttaact tgaccttgaa ctttgcggga
     7681 aatatcggta ttgagacttc gttgacttat cttggtttcg gtctaccatc aacagtacca
     7741 agtttgggta ccttgattgc caatgcccgc aatgcagata ttttggaaaa caagacatgg
     7801 atttggttgc cagcagccat cttcatcctt gtgatgatgc tctgtatcaa ctatgtcgga
     7861 caagctttcc aacgtgcagc agatgctaag cagcgtttag gttaattgtg aaaagggttc
     7921 ctttg
//
LOCUS       DASFRC010000099         7912 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.099, whole genome shotgun sequence.
ACCESSION   DASFRC010000099 DASFRC010000000
VERSION     DASFRC010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7912)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7912)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7912
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.099"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            70..738
                     /locus_tag="U1087_001504"
     CDS             70..738
                     /locus_tag="U1087_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009659321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HEM4755973.1"
                     /translation="MTYSQDYLDDLLVRMAYHSSGIEGNTISLPETVSIILESTLPGK
                     HKSIREFYEIENHKQAFQALLFALDNGEELSLGLVKDIHALLMDRLQHDRGQFKSVQN
                     AIIGATFKTASPEETPFLMQQWVDNANYRLGLPLEIAELLEVLADVHIQFERIHPFSD
                     GNGRTGRLILMFQSMLKLGAPVLISKEDRALYMELLAEQDVTGLSQLLKRSLEFEQER
                     KNQF"
     gene            822..1373
                     /locus_tag="U1087_001505"
                     /pseudo
     CDS             822..1373
                     /locus_tag="U1087_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736297.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
     gene            1418..3007
                     /locus_tag="U1087_001506"
     CDS             1418..3007
                     /locus_tag="U1087_001506"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction-modification system subunit
                     M"
                     /protein_id="HEM4755974.1"
                     /translation="MSKTIQAITNQIWSMANELRGNMDASEYKNYILAFMFYRYLSEH
                     QERFLVEDEIISPAPGETVQDAYAREAVGNDLVEYLENTASHLGYAIAPEDTWARLVA
                     KIDNSEIVASDYQTIFDHFNANVELNQDAMEDFRGVFNDINLGDSRLGNSTVARAKSL
                     NSIVKLIDSIEYKNDEGKDILGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKIVT
                     LGLEKSDTSFSVYDPTMGSGSLLLTVRNELPQGQHIKFYGQEMNTTTYNLARMNLMMH
                     QVGYSNMILNNADTLESDWPDGVDELGINQPRSFDAVVANPPYSAKWDNRESKLKDPR
                     FMEYGKLAPASKADFAFILHSLYHLNNTGTMAIVLPHGVLFRGAAEGHIRKLIIEKNY
                     LDAVIGLPANLFYGTGIPTTILVFKKNRQTKDVFFIDASKEFEKGKNQNHLSDDMVEK
                     IVETYHNRQSVDKYAHLASIEEIVENDYNLNIPRYVDTFEEEEEIDLGQVTQQLEQDR
                     LEIRALEDKIRQQLKTLGVDF"
     gene            complement(3057..4331)
                     /gene="serS"
                     /locus_tag="U1087_001507"
     CDS             complement(3057..4331)
                     /gene="serS"
                     /locus_tag="U1087_001507"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000884256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEM4755975.1"
                     /translation="MLDIKRIRTDFDGVAAKLATRGVAAETLADIKELDAKRREILVT
                     VEELKAERNTVSAEIAQAKRNKENADDKIAAMQKLSAEVKNLDAQLLEIDEKLNAILT
                     VLPNTPHDSVPVGADEEENVEVRRWGTPREFTFEPKAHWDLGENLDILDWERGAKVTG
                     ARFLFYKNLGARLERALYNFMLDEHIAEGYQEIITPYMVNHDSMFGTGQYPKFKEDTF
                     ELADTNFVLIPTAEVPLTNYYRNEILEEKDLPIYFTAMSPSFRSEAGSAGRDTRGLIR
                     LHQFHKVEMVKFATPEQSYDELEKMTANAENILQKLGLPYRVLALCTGDMGFSAAKTY
                     DLEVWIPAQNAYREISSCSNTEDFQARRAQIRYRDAADGKVKLLHTLNGSGLAVGRTV
                     AAILENYQNEDGSVTIPEVLRPYMGGVDVIKP"
     gene            complement(4546..4920)
                     /locus_tag="U1087_001508"
     CDS             complement(4546..4920)
                     /locus_tag="U1087_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000079352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF956 family protein"
                     /protein_id="HEM4755976.1"
                     /translation="MAQSLNKHVELSTTGVSYLSLAGGTVGKFLLGDQALEFYADNNV
                     ENYVQIPWTSIIQIGANVSNRKISRHFEVYTDSGKFLFASKDSGKILKIAREHIGNEK
                     VVKLPTLLQILGQKISNLFAKK"
     gene            complement(4984..5895)
                     /locus_tag="U1087_001509"
     CDS             complement(4984..5895)
                     /locus_tag="U1087_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000136863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter family
                     subunit IID"
                     /protein_id="HEM4755977.1"
                     /translation="MTEKIQLSVKDRKAICWRSTFLQASWNFERMQNLGWAYTMVPAI
                     KKLYTKKEDQIAALKRHMEFFNTHPYVAAPIVGVTLALEEERANGADIDDAAIQGVKI
                     GMMGPLAGIGDPVFWFTVRPILGALGASLAVSGNILGPILFFGLWNAIRMGFLWYTQE
                     FGYKSGKEITKDMSGGILQDITKGASILGMFILAVLAQRWVSIGFNFTVSEVPLSEGA
                     YIEWDKLPEGYEGIQKAFELVGQGLSQTPTKVTTFQQNLNGLIPGFMHLLLTFLCMWL
                     LKKKVSPITIIVGLFAFGIVARLFGIM"
     gene            complement(5917..6729)
                     /locus_tag="U1087_001510"
     CDS             complement(5917..6729)
                     /locus_tag="U1087_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001280330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HEM4755978.1"
                     /translation="MSDISIISAILVVVVAFLAGMEGVLDQFQFHQPIVACTLIGLVT
                     GNLTAGVMLGGTLQLVALGWSNIGAAIAPDAALASVAAAIILIKGGDFSATAISVAQG
                     LAIPLAVAGLFLTMLVRTASVALVHGADAAAERGDFGALERYHLIALSLQGLRIAVPA
                     ALLLAIPTEAVQDALESMPAWLSGGMNVGGGMVVAVGFAMVINMMATREVWPFFAIGF
                     ALAAVSQLTLIALGAIGVSLAFIYLNLSKKGGNGDGGGAGSNDPIGDILEDY"
     gene            complement(6779..7771)
                     /gene="manX"
                     /locus_tag="U1087_001511"
     CDS             complement(6779..7771)
                     /gene="manX"
                     /locus_tag="U1087_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002308759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
                     /protein_id="HEM4755979.1"
                     /translation="MSIGIIIASHGEFAAGIHQSGSMIFGEQDKVQVVTFMPSEGPDD
                     LYAKLNAAVDAFDADDEILVLADLWSGSPFNQASRVAGENPDRKFAIITGLNLPMLIQ
                     AYTERMINAAAGVEEVAANIIKEAKDGVKVLPEELQPTEAAPVADVATTATQGAIPPG
                     TVIGDGKLKINLARIDTRLLHGQVATAWTPASKADRIIVASDTVAQDDLRKQLIKQAA
                     PGNVKANVVPIKKLIEVSKDPRFGNTHALILFETPQEALEAIEGGVEIKELNVGSMAH
                     STGKTMVNTVLSMDKDDVATFERLRELGVKFDVRKVPNDSPKDLFDLINKADVK"
BASE COUNT         2313 a         1630 c         1764 g         2205 t
ORIGIN      
        1 cagttggatc atctgaaact gttgaaaaag gcgctgttac agcagatgtt tatatagaaa
       61 gaggtcagta tgacatattc gcaggattat ttagatgacc ttctggtacg aatggcctat
      121 cattccagcg ggattgaggg gaataccatt tcactgcctg agacggtttc gattattttg
      181 gaaagcacgc tacctggcaa gcacaagagt atccgtgaat tttacgagat tgaaaatcac
      241 aaacaagcct tccaagctct gctatttgcc ttagataatg gggaagagct gagtttggga
      301 ctggttaagg atattcatgc cttgttgatg gaccgtctcc agcatgatcg ggggcagttt
      361 aagtcggtgc aaaacgctat tattggtgcg accttcaaga ctgcatcgcc agaggaaacg
      421 ccttttctta tgcaacagtg ggtggacaat gccaactatc gcttggggtt gcctttggaa
      481 atagctgagc tgttagaggt attggcagat gtgcatattc agttcgagcg tattcaccca
      541 tttagtgatg ggaacggtcg gacaggacgg ctgattttga tgtttcaaag tatgctcaaa
      601 ttgggagcac ccgtactgat tagtaaggaa gatcgagctc tttatatgga gttgctagcg
      661 gaacaagatg tgactggatt atcccaatta ctcaaacgct ccttggagtt tgaacaagaa
      721 cgaaaaaacc agttttaagt cgaattttca gaaagcaact ttcaattgga actattattt
      781 ttgcctgaaa atacaatgaa agccctactt tcacaactac ttggaaacag cgtaagttgg
      841 gggaggtggc ggacttttcc ataaaaacaa actcactttc tagagataag ttatcatcgt
      901 attattatga agttcagaac attcattatg gggatatttt aacaaaatat gacgctattt
      961 tagatgtatg taacaaagaa cttccatcaa ttattggaag tacgatttca gactttgcag
     1021 atgctttact tattgaagga gatattgttt tcgcggatgc ggcagaagac tcgactgttg
     1081 ggaaagctgt tgaagttcga aattttaagg gtaaaaatgt tgtttctggt ttacatacga
     1141 tagttgctag gccgaaagtt ccttatgccc cctactattt aggttatcta attaattcaa
     1201 ctgcatacca taatcaaatt ttacctttaa tgcaggggac aaaagtgagc tcaattagta
     1261 aggctaattt aaaatccacg acagtagtgt tccccaccct ccccgagcaa gaagctatcg
     1321 gcagcttctt ctccgatcta gatcagctta ttactcttca tcagcgaaaa tgagatttcg
     1381 agtaaaaaat gaaacaacat gaaaggatta caaaaacatg tcaaaaacta ttcaagccat
     1441 taccaatcag atttggtcta tggccaatga attgcgaggg aacatggatg cttcggaata
     1501 taagaactat atcctagcct tcatgttcta tcgctaccta tctgagcatc aagagcgttt
     1561 cttggtggaa gatgaaatta tcagtcctgc tccaggagaa actgttcagg atgcctatgc
     1621 acgagaagca gttgggaatg acttggtgga gtatttggaa aatacagctt ctcaccttgg
     1681 atacgcgatt gcaccagaag atacctgggc aagactggta gccaaaattg ataacagtga
     1741 gattgtagcg agtgactacc agacgatttt cgatcatttt aacgccaatg tagaactcaa
     1801 tcaggatgct atggaagatt tcagaggcgt ctttaatgac atcaatctag gtgactctcg
     1861 tttgggcaat tcaacggttg cgcgtgcaaa atccttgaac agtattgtga agctgattga
     1921 cagcattgag tataaaaatg atgaaggaaa ggatattctg ggggaaatct atgagtatct
     1981 tattggacag tttgccgctt cggcaggtaa aaaaggtgga gaattttata ccccgcatca
     2041 agtaagtaag attttagcca agattgttac tttaggtttg gaaaaatcag atactagctt
     2101 ctctgtttac gatccaacca tgggttcagg gtctttgcta ctaacagtgc gtaatgaact
     2161 acctcagggc cagcatatca aattctatgg ccaagaaatg aacacaacta cttataactt
     2221 ggcgcggatg aacctgatga tgcatcaggt cggctacagc aatatgattt tgaataatgc
     2281 tgatacctta gaaagtgact ggccggacgg ggtggatgaa cttggaatca atcagccacg
     2341 tagttttgat gcggtcgtcg caaacccacc ctactctgct aaatgggaca atcgtgagtc
     2401 caaactgaag gatccacggt ttatggaata cggtaagtta gcaccagctt ctaaagcgga
     2461 ctttgccttt atcttacaca gtctttatca tctgaataat acagggacca tggccattgt
     2521 tttaccacac ggagtgctct ttaggggagc agcagaaggt catattcgca aactgattat
     2581 tgagaaaaat tacctggatg cagttattgg cttgccagct aacctgtttt atggcacagg
     2641 cattccaacc actattctgg tcttcaaaaa aaatcgtcag accaaggatg tcttctttat
     2701 cgatgcgagc aaggagtttg aaaaagggaa gaaccagaat cacctttccg atgacatggt
     2761 agaaaaaatt gtagagacct atcacaatcg tcagtctgtt gacaaatatg ctcatttggc
     2821 atcaatagaa gaaattgtag aaaacgacta caatctaaat attcctcgtt acgtcgatac
     2881 ttttgaggaa gaggaagaga ttgatctcgg gcaagtaacg caacaactag aacaagatag
     2941 actagagatt cgggctctag aagataagat tcgtcaacaa ttaaagactt tgggagtaga
     3001 tttttagata aatgaaaaga gcgagtagaa ttttcctcgc tctttctttg tatatcttaa
     3061 ggcttaatca catcaacccc acccatgtat ggacggagaa cttctggaat ggtgacagaa
     3121 ccgtcttcat tttgatagtt ttcaaggatt gccgcaaccg tacgacctac tgctagacca
     3181 gatccgttga gggtgtggag caatttgact ttgccgtcag cagcatcgcg gtagcggatt
     3241 tgggcacggc gagcttggaa atcttctgtg ttggaacagc tggagatttc acggtaggca
     3301 ttttgggctg gaatccagac ttccaagtca taggttttgg cagctgagaa gcccatatcg
     3361 cctgtacaga gggctaaaac gcggtaaggt aagcctagtt tttggagaat attctctgcg
     3421 tttgctgtca ttttttccaa ttcatcataa gactgctccg gtgtagcaaa tttgaccatt
     3481 tcaaccttgt ggaattggtg gaggcgaatc agaccacggg tgtcacgacc agcagaacca
     3541 gcttcagaac ggaaagacgg gctcatggct gtgaagtaga ttggcaggtc tttttcttcc
     3601 aaaatctcgt tgcggtagta gtttgtcaat ggtacttccg cagttgggat gaggacgaag
     3661 ttggtatccg ccaactcaaa ggtatcttcc ttgaattttg gatattgtcc agtaccaaac
     3721 atagagtcat ggttgaccat gtaaggtgtg atgatttcct ggtagccttc tgcgatatgc
     3781 tcgtccaaca tgaagttgta gagggcacgc tccaagcggg cacccaagtt tttgtagaag
     3841 aggaagcggg caccggttac ttttgcccca cgttcccagt ccagaatatc caagttttcg
     3901 cccaagtccc agtgtgcttt tggctcgaag gtaaattcac gcggagttcc ccaacgacga
     3961 acttctacgt tttcttcttc atccgcacca acaggaacag aatcatgtgg cgtatttgga
     4021 agaacagtga gaatagcgtt caatttttca tcgatttcca aaagctgagc gtctaagttt
     4081 ttcacttccg cagacaattt ctgcatagca gcaatcttgt catccgcatt ttccttgttg
     4141 cgttttgctt gggcaatctc tgctgaaact gtgttgcgct ctgcttttaa ttcttctaca
     4201 gtgaccaaga tttcacggcg ttttgcatcc aattccttga tgtctgccaa ggtttcggca
     4261 gccacaccac gagtagctaa tttggcagcc actccgtcaa aatctgtacg aatacgtttg
     4321 atatctagca tagatgtctc ctttagaata aaaaacacag aatgagagat gctggagcga
     4381 tagttaccgc ggttccatcc agcttcacat tctgtgcact ttaagtatgt catttttagc
     4441 caacggtaga atttcatatc ccttgtttat ctgctcacag cgaccgcaga ctttctgaaa
     4501 aacgcctgat attacttatc cgtttgtttt attatacttg attttttatt tttttgcaaa
     4561 tagatttgag attttctgtc ctagaatttg caggagagtt ggcagtttga caactttctc
     4621 attgccaata tgttcacgag caatttttag aattttacca gaatctttag aagcaaaaag
     4681 gaatttgccg ctatcagtat agacttcgaa gtggcgactg atttttctat tggaaacatt
     4741 ggcaccaatc tgaatgatag atgtccaagg gatttgaaca taattttcaa cgttgttatc
     4801 agcataaaat tccagagctt gatctcctag caggaactta ccaaccgttc cacctgcaag
     4861 actgagatag gaaacgcctg ttgtggatag ttcgacgtgt ttatttaatg attgtgccat
     4921 agttacctca tttcttgttt tattatacca taaaaccccg catgagcggg gtttcttaat
     4981 ggattacata attccaaata ggcgagctac gataccgaat gcaaacaaac caacgatgat
     5041 agtgattgga gaaacttttt tcttcaacaa ccacatgcat aggaaggtaa gaagcaagtg
     5101 catgaagcct gggataagac cgttcaagtt ttgttggaaa gtagtaactt tagttggagt
     5161 ttgtgacaaa ccttgaccaa ccaattcaaa ggctttttgg ataccttcgt agccttctgg
     5221 caatttatcc cactcgatgt aagcaccttc tgagagtgga acttcagaaa ccgtgaagtt
     5281 gaagccgata gatacccaac gttgagcaag tacagcaagg atgaacatac cgaggataga
     5341 agccccttta gtgatgtctt ggaggatacc acctgacata tctttagtga tttctttacc
     5401 tgatttgtaa ccaaactctt gagtgtacca taggaagccc atacggatag cgttccaaag
     5461 accgaagaag aggattgggc caaggatgtt acctgacaca gcaagtgaag cacctagggc
     5521 accgaggata ggacgtactg taaaccagaa tactgggtcg ccgataccag cgagaggtcc
     5581 catcataccg attttcacac cttggatagc agcatcatcg atgtcagcac cgtttgcacg
     5641 ctcttcttca agggcaagtg ttacaccgac gataggtgca gcaacgtatg ggtgggtgtt
     5701 aaagaattcc atgtggcgtt taagagccgc aatttgatct tctttcttag tgtaaagttt
     5761 tttgatggct ggaaccattg tgtaagccca acccaagttt tgcatacgct caaagttcca
     5821 tgatgcttga aggaaggttg aacgccagca aatcgcttta cgatctttta ctgaaagttg
     5881 aattttttct gtcatgattg tgttcttcct ttcttcttag tagtcttcta ggatgtcgcc
     5941 gattgggtcg ttagaaccag ctccgccacc gtcaccgttt ccaccttttt tagaaaggtt
     6001 aaggtagatg aaggcaagag atacaccgat agcaccaagt gcgataagtg tcaactggct
     6061 aacagcagca agagcgaaac cgatagcgaa gaatggccat acttcgcgag tagccatcat
     6121 gttgataacc atagcgaaac ctacggcaac aaccatacca ccaccgacgt tcataccacc
     6181 tgacaaccaa gctggcatag attcaagagc atcttgaaca gcctcagttg ggatagcaag
     6241 aagaagggca gcaggaacag caatacgaag accttgaagt gaaagggcaa tcaagtggta
     6301 gcgctcaagt gcaccgaaat caccacgttc tgcagcagca tcagcaccgt gtacaagggc
     6361 aacagatgca gtacgcacaa gcattgtaag gaaaagacct gcaacagcaa gagggatagc
     6421 aagaccttga gcaactgaga tagcagttgc tgagaagtca ccacccttga tcaagatgat
     6481 agcggcagca acagaagcaa gggcagcgtc tggtgcaatc gcagcaccga tgtttgacca
     6541 gccaagggca acaagttgga gagttcctcc aagcataaca cctgctgtaa ggttaccggt
     6601 aacgagaccg atgagagtac atgcaacgat tggttgatgg aattggaatt ggtcaaggac
     6661 accttccata cctgcaagaa aggccacgac aacgaccaaa attgcagaaa taattgaaat
     6721 atctgacata gttataatcc tttcatattt ctgataatca cacagtgtta atcagttatt
     6781 atttaacatc tgccttgtta atcaagtcaa acaaatcttt tggtgaatcg tttggaactt
     6841 tacgaacatc gaatttgaca ccgagttcac gcaagcgttc aaaggttgca acatcgtcct
     6901 tatccataga aagaacagtg ttcaccattg ttttacctgt tgagtgagcc atcgaaccaa
     6961 cgttcaattc cttgatttct acaccacctt cgattgcttc aagagcttct tgaggtgttt
     7021 caaagagaat caaagcgtgt gtgttaccga agcgaggatc tttagaaacc tcaatcagtt
     7081 tcttgatagg aacgacgttt gctttaacgt ttcccggagc cgcttgcttg atcaattgtt
     7141 tacgaaggtc atcttgtgcc actgtatctg aagcgacgat gatacggtca gctttagaag
     7201 caggagtcca agcagtagcg acctgaccat gcaagagacg agtatcaata cgagccaagt
     7261 tgattttcaa cttaccatca ccgataacag ttcctggagg gattgcacct tgtgtagcag
     7321 ttgttgctac atctgctaca ggagcggctt cagttggttg tagttcttct ggaagaacct
     7381 tcacaccatc cttggcttcc ttaataatgt ttgccgcaac ttcctccacg ccagcagcag
     7441 cgttaatcat acgctctgtg taagcttgga taagcattgg caagtttaga ccggtgatga
     7501 tagcaaactt acgatctgga ttttcaccag ctacacggct tgcttggttg aatggagaac
     7561 cactccaaag gtcagccaaa accaagattt catcatcggc atcgaatgcg tccacggcag
     7621 cattgagctt agcatataaa tcatctggtc cttcacttgg catgaaagta acaacctgta
     7681 ctttatcctg ttcgccaaag atcattgaac ctgactgatg aataccagca gcaaattcgc
     7741 catgacttgc aataatgatt ccaatactca ttattgatcc tcctaaattt ttcttgttca
     7801 tgtaaaaacc attgaatggg ctttcatgtt cgaactataa cattataaaa cgttttcagt
     7861 gcatttgtca agagaaatta tgttaaaagt gcaaaatgtt tccaaaagct aa
//
LOCUS       DASFRC010000100         7723 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.100, whole genome shotgun sequence.
ACCESSION   DASFRC010000100 DASFRC010000000
VERSION     DASFRC010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7723)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7723)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7723
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.100"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(66..386)
                     /locus_tag="U1087_001512"
     CDS             complement(66..386)
                     /locus_tag="U1087_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1292 domain-containing protein"
                     /protein_id="HEM4755980.1"
                     /translation="MAHHHDHEHDHNHDERELITLVDDQGNETLFEILLTIDGQEEFG
                     KNYVLLIPASAEEDENGEVEIQAYSYIENENGTEGDLQPIPEDATAEWDMIEEVFNSF
                     MEEE"
     gene            complement(398..817)
                     /gene="ruvX"
                     /locus_tag="U1087_001513"
     CDS             complement(398..817)
                     /gene="ruvX"
                     /locus_tag="U1087_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HEM4755981.1"
                     /translation="MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIPINEEKGEFGLER
                     LTELVEQYKVDKFVVGLPKNMNNTIGPRVEASQAYGDLLTERYKLPVDYQDERLTTVA
                     AERMLIEQADISRGKRKKVIDKLAAQLILQNYLDRTF"
     gene            complement(817..1083)
                     /locus_tag="U1087_001514"
     CDS             complement(817..1083)
                     /locus_tag="U1087_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IreB family regulatory phosphoprotein"
                     /protein_id="HEM4755982.1"
                     /translation="MGFTEETVRFRLDDTDKQEISKTLTSVYRSLEEKGYNPINQIIG
                     YVLSGDPAYIPRYNDARNQIRKHERDEIIEELVRYYLKGNGIDL"
     gene            complement(1183..1581)
                     /gene="spx"
                     /locus_tag="U1087_001515"
     CDS             complement(1183..1581)
                     /gene="spx"
                     /locus_tag="U1087_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017768833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator Spx"
                     /protein_id="HEM4755983.1"
                     /translation="MIKIYTVSSCTSCKKAKNWLNAHQLSYNEHNLAKEAITKEEILN
                     ILTKTENGIASIVSSKNRYAKSLDFDIEELSVNEVIDLITSNPRILKSPILIDEKRLQ
                     VGYKEDDIRAFLPRAVRNVENAQARMRAAL"
     gene            complement(1817..2968)
                     /gene="recA"
                     /locus_tag="U1087_001516"
     CDS             complement(1817..2968)
                     /gene="recA"
                     /locus_tag="U1087_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001085741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HEM4755984.1"
                     /translation="MAKKPTKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLG
                     ERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKDGG
                     IAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
                     AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFG
                     NPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEA
                     VVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGSENAKKFLADNPAIF
                     DEIDRKIRVHYGLIEADGVEEVATEEAPVVAEEIQDVILDLDGGIELED"
     gene            complement(3020..4201)
                     /locus_tag="U1087_001517"
     CDS             complement(3020..4201)
                     /locus_tag="U1087_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence/damage-inducible protein A"
                     /protein_id="HEM4755985.1"
                     /translation="MKAELIAVGTEILTGQIINTNAQFLSEKCAELGIDVYFHTAVGD
                     NEQRLLSVLEVAGKRSEIVILCGGLGPTEDDLTKQTLAAFLGRNLVFDELAMAKLDRF
                     FASRPGRVRTPNNERQAQIVEGSQALQNPAGLAVGGMIEQDGVTYIVLPGPPSELKAM
                     FSESLLPLLSQSQQQLYSRVLRFFGIGESQLVTVLADLIDKQTDPTLAPYAKVGEVTL
                     RLSTKATSQEEANLRLNQLEEKILQHDKLREYFYAYGEENSLVQTVAERLVEKNKSIA
                     IVEQGTGGLLQAELSLALADQPYFSGGKVIGQLGTESGRLSEEADCIRQELQADLGLA
                     VSVLIKPESTEDNVLAKVYLTLATTSGISQKEIDLGGYSWQYLRQLACLQAWDFVRNT
                     L"
     gene            complement(4238..4807)
                     /locus_tag="U1087_001518"
     CDS             complement(4238..4807)
                     /locus_tag="U1087_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HEM4755986.1"
                     /translation="MSRCAWVNPNNPLYIAYHDEEWGNPLHDEQALFELLCLESYQAG
                     LSWEIVLNKRQAFCSAFFNYDIQKVATMTDSELDSLLTNPDIIRHKAKLYATRANAQA
                     FLRVQEEFGTFDTYLWEWVNFTSIDNPVKSFRELPTKNDLSERISKDLKKRGFKFVGP
                     VCIYSYLQAAGLLNEHEETCEIGKKLRTN"
     gene            complement(5061..5651)
                     /gene="ruvA"
                     /locus_tag="U1087_001519"
     CDS             complement(5061..5651)
                     /gene="ruvA"
                     /locus_tag="U1087_001519"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000271492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HEM4755987.1"
                     /translation="MYDYIKGILTKITAKYIVVETHGVGYILQVANPYAYSGQVQQEV
                     TVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGIGPTTALAIIAVDDNDGLVRAIE
                     QKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALDEAMEAME
                     ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK"
     gene            complement(5690..7627)
                     /gene="mutL"
                     /locus_tag="U1087_001520"
     CDS             complement(5690..7627)
                     /gene="mutL"
                     /locus_tag="U1087_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HEM4755988.1"
                     /translation="MSHIIELPEILANQIAAGEVIERPASVVKELVENSIDAGASQIE
                     ISVEEAGLKMIQITDNGEGIAPDEVALALRRHATSKIKNQSDLFRIRTLGFRGEALPS
                     IASVSHMIIETATADSAHGLHLEAKGGVIEKEEPVSRPVGTQITVSDLFYNTPARLKY
                     VRSQQAELSHIVDVVNRLSLAHPEIAFALVNEGRELIRTAGTGKLRQAISGIYGIASA
                     KKMVEIEAEDLDFQISGYVSLPELTRANRNYISIFINGRYIKNFLLNRVILEGYGSKL
                     MVGRFPLAVISIEIDPYLADVNVHPTKQEVRISKEKELMTLIREAISQALKEQDLIPD
                     ALENLAQSSTRPKVKAEQGTLPLREPKIYYDTIKQDFFLKPDVVAEDVKPLEEDRQEI
                     VESPVENKPTSVQFAERQTAESTDPEHPNLSTKELAKLADKLDQEETSTFPELEYFGQ
                     MHGTYLFAQGKTGLYIIDQHAAQERVKYEYYREKIGQVDNSAQQLLVPYIFEFPQNDA
                     LDLVHKMDAFRQVGVNLEEYGANQFILREHPIWMKEEEIESGIYEMCDMLLLTDQVSI
                     KQYRAELAIMMSCKRSIKANHALDDYSARDLLRQLSYCQNPYNCPHGRPVLVHFSKSD
                     MEKMFRRIQENHTSLRELGKY"
BASE COUNT         2093 a         1822 c         1424 g         2384 t
ORIGIN      
        1 atccactgga ccttaattcg ctttcttgtt ttcaggctca tgataaaaag gtccactgga
       61 cctttttatt cctcttccat aaagctgttg aagacttctt caatcatatc ccattctgct
      121 gttgcgtctt ctgggatagg ttgcaaatcg ccttctgtgc cattctcatt ctcgatgtat
      181 gagtaggctt ggatttcaac ttctccgttc tcatcttctt ctgcacttgc aggaatcaag
      241 agaacatagt tcttaccaaa ctcttcttga ccgtcaatcg tcaataagat ttcaaaaagt
      301 gtttcgttac cttggtcgtc taccaaagta atcaattcac gttcgtcgtg gttgtggtcg
      361 tgttcatggt catgatgatg tgccattaga atctccttta aaatgttcta tctaaataat
      421 tttgtaaaat cagctgagct gctaatttat cgataacttt cttgcgtttt cctcggctga
      481 tatccgcttg ctcaatcagc atccgttctg ctgcaacagt tgttaaacgt tcatcctgat
      541 aatcaactgg aagtttataa cgctcagtca ataaatcacc gtaagcttga ctagcttcca
      601 cacgtggacc aatagtatta ttcatattct tcggcaagcc tacaacaaat ttatcaacct
      661 tgtactgttc tacaagttcg gtcaaacgct ccagaccgaa ttcgcccttt tcttcattga
      721 ttgggatgat ttccaaccct tgggccgtga aacctaacgg atctgaaatg gctacaccaa
      781 ctgtcttgga accgacgtct aatcccatta ttctcattag aggtcaatcc cattcccttt
      841 caaatagtag cgcaccaatt cttcaatgat ttcatctcgt tcatgcttac gaatctgatt
      901 gcgagcatca ttatagcgag gaatataagc agggtcccca cttaatacat agccaatgat
      961 ttggttaatc ggattatagc ccttttcctc tagcgaacga taaacactag tcaatgtttt
     1021 gctgatttct tgtttatctg tatcatctag gcgaaaacga acggtttctt cggtaaatcc
     1081 catacttaca ccttctttcc ctatttttta cattatatca caaattttaa ttattctcaa
     1141 aaaatgcgca aaaagaaccc caaaagagtc cttttgtaca tcttatagag ctgctctcat
     1201 acgagcttga gcattttcaa cattgcgcac tgcacgtggc aagaaagcgc gtatatcatc
     1261 ttctttatag cccacttgaa gtcgtttctc atcaatcaag attggactct tcaaaatacg
     1321 tgggttagag gtaattaaat caatgacctc gttcacactc aactcttcaa tatcaaagtc
     1381 cagactcttt gcataacggt tttttgacga tacgatactt gcaataccat tctctgtttt
     1441 tgttaagatg tttaggattt cttccttagt aatggcttcc ttcgcaagat tatgctcatt
     1501 ataagataat tggtgagcat ttaaccaatt tttcgctttc ttacaagaag tacaactaga
     1561 tacagtataa attttaatca tgtagtcact cctttgctac attttattaa gcacattata
     1621 gactattata tcataaattc cctcggtctg cagacctatt ttttaaaaaa actttaaatt
     1681 ttggggtaaa aattcggttt ttattagaaa aaagcctgga atctccagac tttttcgttc
     1741 ttatactaaa caacttcgta catacctata acagatacgc accaatagtt caatattaaa
     1801 tctattttgt taggaattaa tcttctaatt caataccgcc atcaagatct aggataacat
     1861 cttggatttc ttccgcaaca acaggagctt cttcggtcgc aacttcttca actccatctg
     1921 cttcaatcaa gccataatga acacgaatct tgcggtcaat ttcatcaaag attgctggat
     1981 tatctgctaa gaatttctta gcattttcag aaccttggcc aattttttct ccattatatg
     2041 aataccaagc acctgctttt tggatgatgc cgaggttgct accaatctca atcaattcac
     2101 ctgtgcgaga aattccttca ccgtacatga tttcaacaac agcttcttta aatggtggcg
     2161 ccaccttgtt cttcacgatc ttcaccttgg tttccttacc aacgttttga tctttcttgt
     2221 cgcctgttcc tttgatttgt gtgtttccac gaacatccat acgaacagat gcatagaatt
     2281 taagcgcacg tccaccaggg gttgtttcag ggttaccaaa catgacaccg actttttcac
     2341 gcaattggtt gatgaaaata gctactgtct tagttttgtt gatggatgca ccgagtttgc
     2401 gcatggcctg actcatcatg cgagcctgca aaccaacatg actatcacca atatcgccat
     2461 caatttctgc acgtggtaca agggctgcaa ccgagtcaac aacaaccaaa tcaaccgcac
     2521 cagagtcgat cagcttgcct gcaatttcaa gaccttgttc ccctgagtct ggctgggaca
     2581 agagtaactc atcaatattg acaccaagag ctgctgcata ggctggatcc aaggcatgct
     2641 ccgcatcgat aaaggcagca ataccaccat ctttctgggc ttgagctact gcgtgtagag
     2701 caacagttgt cttacctgag ctctctggac cgtaaatctc aatgatacga cctttcggat
     2761 agccacccgc tccaagcgca atgtcgattg acaaactacc tgagctcatg acttgaactt
     2821 tttgttcagc acgctcacca agacgcataa cagcaccctt accaaaatct ttttcaattg
     2881 attttagggc atcatccagc gcttttttac gctcatcgcc aaatttcttt gtaatatctt
     2941 ctaatttctt agttggtttc ttagccaatg attttctcct cttttcttag tcaaactatt
     3001 atagcaaata tctgctattt cacaaagtgt ttcgtacaaa atcccaggcc tgcagacaag
     3061 caagctggcg aaggtattgc cacgaataac cacctaaatc tatctctttt tgggaaatac
     3121 ccgaggtcgt agccaaagtg agatatactt ttgcaagtac gttgtcctct gttgattccg
     3181 gtttgataag cacagacaca gccaaaccca aatcagcttg cagctcctgc cgaatgcagt
     3241 cagcttcctc tgatagcctg cccgattctg tccctagctg accgatgact tttcctccgc
     3301 taaaatacgg ctgatcagcc aaagccaggc tcaattcagc ttgcaagaga ccacctgtcc
     3361 cctgttcgac gatggctatg cttttattct tttccaccaa tcgctctgct actgtctgta
     3421 ccagactatt ttcctcaccg taagcataga aatattctct cagtttatca tgttgtaaga
     3481 ttttttcttc caactgattc aaacgtagat ttgcctcttc ttggctggtc gctttggtgg
     3541 acaagcgtaa agtcacctct ccaacttttg cataaggagc aagagttggg tctgtctgct
     3601 tgtcaatcaa gtccgccaaa acagtcacta actggctttc accaatgcca aaaaaacgta
     3661 ggacacgcga ataaagttgc tgctgagatt gggacagtaa aggtaagaga ctctcagaaa
     3721 acatggcctt gagctcactt ggtgggccag gcaaaacaat ataggttaca ccatcttgct
     3781 caatcatacc accaacagct aaaccagctg gattctgtag cgcctgactt ccctccacaa
     3841 tctgtgcctg acgttcatta tttggtgtac ggacacgacc tgggcgactg gcaaagaaac
     3901 ggtctaattt tgccatagcc aactcatcaa acacaagatt tctacctaag aaggctgcca
     3961 aggtctgctt agtcaagtca tcttctgttg gccccagtcc tccacagaga ataactatct
     4021 cactacgctt gccggctacc tccagtacag acaaaagcct ctgttcatta tctccaacag
     4081 ctgtgtggaa gtaaacatca attcccagct ctgcacattt ctccgaaagg aactgagcat
     4141 tggtattaat gatttgtcct gtcaaaatct ctgtacccac agcgattagt tctgctttca
     4201 tattcctcct ctgtctaggg tgcgattgct cgctcatcta attagttcgt aatttctttc
     4261 caatctcgca agtttcttca tgttcattca acagacctgc agcctgcaaa taggagtaaa
     4321 tacagacagg ccctacaaac ttgaaacctc gtttcttcaa atcttttgaa atccgctcag
     4381 acaagtcgtt cttggtcggc aattctcgga aggacttgac agggttgtcg atagatgtaa
     4441 agttaaccca ttcccaaaga tacgtatcaa acgtaccgaa ttcctcctgt actcgaagaa
     4501 aggcctgagc attggcgcgg gtagcgtaca gctttgcctt atgacgaatg atgtctggat
     4561 tggtcagaag gctatctaac tcgctatctg tcatggtcgc aaccttttga atatcatagt
     4621 tgaaaaaagc agagcaaaaa gcctggcgtt tattgagaac aatttcccag gaaagtcctg
     4681 cttggtagga ttccaagcaa agtaactcaa acagagcctg ctcatcgtga agcggattgc
     4741 cccattcttc atcatggtaa gcaatataaa gtggattgtt gggattgacc caagcacaac
     4801 gggacataga aactcctttt cgtgaataac taaagtgcga atcaggataa actgactgaa
     4861 acacggctac gatactttgt aaaattgtca aactgaatcc taaatatcac cgaataacgc
     4921 agttgacatc tggcaaaagg cttcgtcaaa actcgccttt tacctagttg tcattgcgga
     4981 ggtctcacaa cgaaatttct agcaaaattt ctgttcggcc gtctattttg ctttgtatcg
     5041 cttaacgcct tagtatccta ttacttcatc agcattttaa gggctgactt gatgtagttt
     5101 tctgcggtgt cgttggtgcc ttcaaagaat ttcttgattt tcttgagttc ggctggtcgg
     5161 tagccaagag cttccatggc ttccatagct tcatcaagag cgatattttc actggatggt
     5221 gctacttgtt gaacaggacc cgcttcttcg ctcatgacaa acttgccttc caagtccaaa
     5281 atcatctgct gggctgtttt cttgccaatc tttggaaact tggtcaggta ggtaatgttt
     5341 ttctgctcaa tagcacgaac aagtccatca ttatcatcaa cagcaataat agccagagct
     5401 gttgttggcc caatacctga tactgaaatc agactcagaa agacggattt ttcattttct
     5461 gtagcaaatc cgtagagcaa atgagcgtct tcacgaatca cctgatgagt atagacagtc
     5521 acttcttgct gaacttgtcc tgaataggcg tagggattag caacctgcaa gatatagcct
     5581 actccatgcg tttctaccac aatgtatttt gcagttattt ttgttaaaat tcctttaata
     5641 tagtcgtaca tatacttcct ttactaatgt gtcaactttt tcaactatgt taatacttgc
     5701 ccaattcacg caaactcgtg tgattttctt gaatgcgacg gaacattttt tccatatccg
     5761 atttgctaaa atgtactaag actgggcggc cgtgcgggca gttataggga ttttggcagt
     5821 aagacaattg tctcaataaa tcacgcgccg aataatcatc caaggcatga ttggccttga
     5881 ttgaccgttt acaagacatc atgatggcca gttctgcccg atactgcttg attgacacct
     5941 gatccgtcaa gagcaacatg tcgcacatct cataaatgcc agactcaatc tcctcttcct
     6001 tcatccaaat aggatgttca cgcagaataa attgattagc tccatattct tctaagttga
     6061 caccaacttg acggaaggca tccattttgt ggacaaggtc aagggcatca ttctgcggaa
     6121 attcaaaaat atacggcacc aataactgtt gagctgaatt gtcaacctga ccaattttct
     6181 cacgatagta ttcgtatttg acccgctctt gtgcggcatg ctggtcaatg atatacagtc
     6241 ctgtttttcc ttgtgcaaaa agataggtgc cgtgcatttg accaaaatat tccaattctg
     6301 ggaaggttga ggtttcttct tggtctagtt tgtctgctaa tttggccaac tctttagtac
     6361 tcaagttagg gtgttctggg tctgtacttt cagctgtctg gcgttctgca aattgaacag
     6421 aggtaggttt attttcgaca ggcgactcaa caatctcttg cctatcctct tcgagaggtt
     6481 tgacatcctc agcgacaaca tctggtttta aaaagaagtc ttgcttaatc gtatcataat
     6541 agatttttgg ctctctgagt ggtaaggtgc cttgctctgc ttttactttt ggtcgagtac
     6601 ttgactgagc taaattctca agagcatctg gtatcaagtc ctgctcttta agtgcttgac
     6661 taatcgcctc tcgaatcaag gtcatgagtt ctttttcctt ggagatgcga acttcctgct
     6721 tggtcggatg cacattgaca tcagcaagat aggggtcaat ttctatagaa atgactgcca
     6781 atggaaagcg tccaaccatc aacttactgc cgtaaccttc caaaattact cgattcagca
     6841 aaaaattctt gatatagcga ccgttgatga aaatggaaat gtagttgcgg ttggcacgag
     6901 tcaactctgg caaggaaaca taacctgaaa tctgaaaatc cagatcttct gcctcaattt
     6961 caaccatttt tttggcagaa gcaatcccat aaatccctga aattgcctga cgaagtttcc
     7021 ctgtccctgc agttctaatt aattctcgtc cttcgtttac taaggcaaag gctatttccg
     7081 gatgagctag actcaatcga tttacaacat caacaatatg tgataattca gcctgttgac
     7141 tgcgaacgta tttgagacga gcaggggtat tgtaaaataa atccgaaaca gtaatctgcg
     7201 taccaactgg acgactaact ggctcctctt tctcgatgac accacctttg gcctccaaat
     7261 gaagtccgtg tgcagagtct gccgtagctg tctcaatgat catatgactg acagaagcaa
     7321 tggagggcag agcttctcca cgaaaaccga gggtgcgaat acgaaacaaa tccgattgat
     7381 tttttatctt actggtggcg tgacggcgga gggcaagcgc tacttcatca ggggcaatcc
     7441 cctcaccgtt atccgtaatt tgaatcattt tgaggccagc ctcttcaaca ctaatttcaa
     7501 tctgactagc ccctgcgtca atggaatttt ccaccaactc cttaaccaca ctggctggtc
     7561 gctcaatgac ctcaccagcc gcaatctggt tggctagtat ttctggtagt tcaataatat
     7621 gtgacatcat ttctcctaca tttctttaat aatttttccc gaatgcttat ttttccatta
     7681 taccacatat ccactttccc tccttttccc agataggcta aag
//
LOCUS       DASFRC010000101         7691 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.101, whole genome shotgun sequence.
ACCESSION   DASFRC010000101 DASFRC010000000
VERSION     DASFRC010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7691)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7691)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7691
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.101"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..510)
                     /locus_tag="U1087_001521"
     CDS             complement(<1..510)
                     /locus_tag="U1087_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1273 domain-containing protein"
                     /protein_id="HEM4755989.1"
                     /translation="MDTKSLLVTGYRHTDLGIFSEKDPRLHIIKSAIRRNFIRFLEEG
                     VSWFILTGQLGFEYWSLEVLEDLRAEGYQLSIATIFPFENHGEQWNEANQAKLARFKQ
                     VDFVKYAYPRYENPGQFRDYNQFLLDNTAGCYLFYDSENETNLKYLYHMVLKKEGYNK
                     KTLTFEELNE"
     gene            576..1193
                     /gene="recU"
                     /locus_tag="U1087_001522"
     CDS             576..1193
                     /gene="recU"
                     /locus_tag="U1087_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RecU"
                     /protein_id="HEM4755990.1"
                     /translation="MVNYPHKVSKKINRTSPISSQRVNFANRGMSFEAAINDSNQYYL
                     AHDIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQASTTDYSGVFKRHYIDFEAKET
                     RQKASMPMKNFHAHQIEHMKQVVKQGGICFVLLHFSTLKETYLLPATHLIEFYQVDMG
                     SKSMPLTFIRQYGFEIQMGRFPSIPYLEIVEKNLLGGESFENYNN"
     gene            1162..3348
                     /locus_tag="U1087_001523"
     CDS             1162..3348
                     /locus_tag="U1087_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PBP1A family penicillin-binding protein"
                     /protein_id="HEM4755991.1"
                     /translation="MVNLLKTTTIKKALLITANILLAGAIIACLAGAALVVYYIQSAP
                     ELTEESLTATVSSKIYDKNGNLIADLGAEKRSSAKTEEIPTDLVNAIVAIEDQRFFNH
                     RGVDVIRIAGSLINNLSGGRLQGGSTLDQQLIKLTYFSTSVEDQNLKRKIQEAWLATQ
                     LERRNTKQEILTYYINKVYMSNGNYGMKTAALAFYGKELKDLTLPQLALLAGMPQAPN
                     QYDPYTNPEDAKERRDLVLAEMLEEKYIDNTQYEQAVLTPVTDGLQPLSTAAAYPAYM
                     DNYLKQVVEEVEAKTGYNLLTTGMDVYTNVDPAAQQQLWNIYNTDMYVSYPDDLLQVA
                     STVVDVSNGKVVAQLGSRKQETNVSFGTNQAVETNRDFGSTMKPITDYAPAFENGIYT
                     STADLILDGPYNYPGTTTPVNNWDKQYYGNISVKTAIQYSRNVTAVKALEATGLENAL
                     KFLNSVGIAYPDIHYSNAISSNTSDTSSKYGASSEKMAAAYAAFANGGTYYAPQYVNK
                     IVFSDGTVTEYAPKGTKVMSAETAYMMTDMMKAVMSYGYGLNASVSGVPMAGKTGTSN
                     YTDSETDTILASIPEANYSYMVVPDENFVGYSSQYAMAVWTGYTNRMTPILDNSMRIA
                     TDVYHNMMLFMHSDYTATDWEMPSGLVRYGSNYYLRGSRSLSNAYNTYTSSSTSSSSS
                     TETSETAEATTTSSEASSGTSTETATSSTETATTGNNPATGQTDGQ"
     gene            3407..4120
                     /gene="rsmG"
                     /locus_tag="U1087_001524"
     CDS             3407..4120
                     /gene="rsmG"
                     /locus_tag="U1087_001524"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004260112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HEM4755992.1"
                     /translation="MKPEVFYKTLADQGIQLSDQQKHQFHRYFQLLVEWNEKINLTAI
                     TEESEVYLKHFYDSIAPILQGHIQNEPLRLLDIGAGAGFPSLPMKIIFPQLDVTIIDS
                     LNKRINFLHLLAKELELEGVHFYHGRAEDFAQDKNFRAQFDLVTARAVARMQILSELT
                     IPYLKLNGKLIALKASSAEDELTQAKNALNLLFAKVIENHDYTLPNGDPRTLTIVEKK
                     KETPNKFPRKAGMPNKRPL"
     gene            complement(4162..4365)
                     /locus_tag="U1087_001525"
     CDS             complement(4162..4365)
                     /locus_tag="U1087_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HEM4755993.1"
                     /translation="MVQGTVKWFNAEKGFGFIAQENGPDVFAHFSEIQSDGFKSLEDG
                     QKVTFEVEQGQRGLQATNITKIG"
     gene            complement(4525..5359)
                     /locus_tag="U1087_001526"
                     /pseudo
     CDS             complement(4525..5359)
                     /locus_tag="U1087_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646498.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
     gene            complement(5356..7029)
                     /locus_tag="U1087_001527"
     CDS             complement(5356..7029)
                     /locus_tag="U1087_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4755994.1"
                     /translation="MKKIIEFKDFTFKYQAQQEPTLKDIQLTIYQGEKVLIIGPSGSG
                     KSTIGQCLNGIIPNIYKGEHSGSLLLDGQEAFNLSVYDKSLLVSTVLQDTDGQFIGLS
                     VAEDLAFALENDMESQVVMKQKVGDWAERLSLTDLLAHRPQDLSGGQKQRVSLGGVLI
                     DESPILLFDEPLANLDPKSGQDTIDLIDRLHKQEGTTTIIIEHRLEDVLYRQVDRVVL
                     INDGRILFNGGLDDLLRTSLLQENGIREPLYLSTLRALGYPIAQAEHLSSVWEIDIEA
                     LNIASLLTLHFENGEKESLLEVKHLHFSYPNKQVLTDIQLTIHKGERLAIVGKNGAGK
                     STLAKVLCGFIQGEGEILWKGQSIKEDSVKERAERIGYVLQNPNQMISQTMIFDEVAL
                     GLRVRGVTEEEIEHRVHHILKVCGLYPFRNWPISALSYGQKKRVTIASILVLNPEIIL
                     LDEPTAGQDQRHYREMMEFLDQLNAQGHTIVMITHDMQLMLDYSDRAVVVVDGQIIED
                     ASPAEILSDDMVIERANLKETSIFHLAERLGVNPLELTTFYMQEERRGR"
     gene            complement(7141..7458)
                     /locus_tag="U1087_001528"
     CDS             complement(7141..7458)
                     /locus_tag="U1087_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HEM4755995.1"
                     /translation="MAGRFYEAIVFAVATFGDIKSATLPEGGNLILMQADSFAQRVPF
                     QVVASGNEVLISLNVASRKEVDRLIERVEANGGQIIGCPTDARGFYGASFTDLDGIIL
                     MRL"
BASE COUNT         2435 a         1680 c         1381 g         2195 t
ORIGIN      
        1 ctcattcaat tcttcaaagg taagcgtttt tttattatat ccttctttct ttaagaccat
       61 gtgatataaa tatttcaaat tggtttcatt ttcagaatcg taaaataaat aacaacctgc
      121 cgtattatcc agtaaaaact ggttatagtc tctaaattgc cctgggtttt catagcgtgg
      181 ataagcatac tttacaaaat caacctgctt aaaccgtgct aactttgctt ggttagcctc
      241 attccactgt tcgccatgat tttcaaatgg aaatattgtt gcaatactca gttgataccc
      301 ctcggctcgt aaatcttcta agacttctaa ggaccagtat tcaaaaccca attgacctgt
      361 cagtataaac caactaacac cctcttctaa aaaacgaata aaattcctac gaattgcaga
      421 tttaataatg tgcagtcgag gatctttttc tgaaaaaatt cccaggtctg tatgtctata
      481 acctgttacc aaaaggctct tagtatccat ttcttgtact cttttcgcta attatggtat
      541 aatatgctga tattatttta tcaagaagga gttctatggt caattatcct cataaggtgt
      601 caaaaaaaat caatagaacc agtcctattt catcccagcg agtaaacttt gctaatcgcg
      661 gaatgtcttt tgaggccgct atcaacgata gcaatcaata ttaccttgcg cacgatattg
      721 ctgtcattca caagaagcca actcccgtgc aaattgtaaa agttgattac cccaaacgga
      781 gccgtgctaa gattgtcgaa gcatactttc gacaggcatc taccacagac tactctggtg
      841 tttttaaaag acattatatt gattttgaag cgaaagagac acgccaaaaa gcatccatgc
      901 ccatgaaaaa ttttcatgcg catcagatcg aacacatgaa acaggttgtt aaacaaggtg
      961 gcatttgttt tgtccttctt cacttttcaa cattaaaaga aacctatctc ttgccagcca
     1021 ctcatttgat cgaattttat caagtagaca tgggtagtaa gtcgatgcct ctaaccttta
     1081 ttcgacaata cggctttgag attcaaatgg ggcgtttccc cagcatccca tatctggaaa
     1141 tcgttgaaaa aaatctatta ggtggtgaat cttttgaaaa ctacaacaat taaaaaagct
     1201 cttctaatca ctgcaaatat tttactggcg ggggctatca ttgcctgcct ggccggagct
     1261 gcattggttg tttactacat ccaaagcgct ccagaattga cagaagaatc tttgacagca
     1321 actgtgtcaa gtaaaattta cgataagaac ggaaatctta ttgcagattt aggagcagaa
     1381 aaacgttcga gtgccaagac tgaagaaatt ccaacagact tggtaaatgc gattgtcgca
     1441 atcgaagacc aacgcttctt caatcataga ggggttgacg ttattcgtat tgcgggttcc
     1501 ctgattaata acttgagcgg aggacgtttg cagggtggct cgacacttga ccaacagctt
     1561 atcaagctga cttatttctc gacatccgta gaagatcaaa atctaaaacg gaaaattcaa
     1621 gaggcttggc tggctactca attggaacgc cgcaatacca aacaagagat tttgacctac
     1681 tacatcaaca aggtgtatat gtcaaatggt aattacggta tgaagactgc tgctcttgct
     1741 ttttatggaa aagagttaaa agatttgact cttcctcaat tagctctttt agcaggaatg
     1801 ccccaagcgc caaaccaata tgatccttat accaatccag aagatgcaaa agaacgtcgc
     1861 gatttggtat tggctgagat gctggaagaa aagtacattg ataataccca gtatgaacaa
     1921 gctgttctaa cacctgtaac agatggtttg caaccactat ctactgcagc tgcttatcct
     1981 gcttatatgg acaactatct gaaacaagtc gttgaagaag ttgaagcaaa aacaggttac
     2041 aacttgctga caacagggat ggatgtctat acgaacgtcg atcctgccgc ccagcagcaa
     2101 ctttggaata tctacaatac agatatgtat gtcagctatc cagatgattt attacaggta
     2161 gcttcaacgg ttgtggatgt ttctaatggt aaagtcgttg cgcaattagg tagtcgtaaa
     2221 caggagacaa acgtctcgtt tggtaccaac caagccgttg aaaccaaccg cgactttggt
     2281 tctacaatga agccaatcac agactatgct cctgcttttg aaaacggcat ttatacatct
     2341 acagcagatt taatcttaga cggtccttat aactatcctg gtacaacaac tcctgtcaat
     2401 aactgggata aacaatacta tggcaatatc tctgttaaga ctgctattca gtattctcga
     2461 aatgttacag ccgttaaagc attggaagct acaggcttag aaaatgcctt gaaatttttg
     2521 aatagcgttg gtatcgctta ccctgatatt cattactcta atgctatttc aagtaataca
     2581 tccgatacta gcagtaagta tggagcaagt agtgaaaaaa tggctgctgc ctacgctgct
     2641 tttgccaatg gtggtactta ctacgctcca cagtatgtca ataaaattgt ctttagtgat
     2701 ggaacagtaa cagaatatgc tcctaaaggg accaaagtca tgtctgccga aacagcctac
     2761 atgatgaccg atatgatgaa ggctgttatg tcttacggtt atggattaaa cgcttctgtt
     2821 agtggagttc ctatggcagg taaaacaggt acatcaaact ataccgatag cgaaacagat
     2881 actattctag cttcaattcc agaagcaaat tatagctaca tggtcgttcc tgatgaaaac
     2941 ttcgttggat attctagtca gtatgcaatg gctgtttgga ccggatacac caatcgtatg
     3001 actcctatcc ttgataacag catgcgaatt gcaacagatg tctaccacaa tatgatgctc
     3061 tttatgcatt cggactatac agctaccgat tgggagatgc caagcggact cgtacgttac
     3121 ggttccaatt actatctcag aggtagtcgc tcactatcca atgcttataa cacgtacact
     3181 agctctagta caagttcttc tagttcgact gaaactagtg aaacggccga agcgacgaca
     3241 acatcaagcg aagcatcatc tggaacttcc accgagactg caacttcttc aactgaaact
     3301 gcaacaacag gaaacaatcc tgcgacggga cagacagatg gtcaataaga aaattcccag
     3361 actcttctgg gtttttcttt tgcttaaatt atgataagat aagattatga agcctgaagt
     3421 attttataaa accttggcag accaaggtat tcaattaagc gaccaacaaa aacaccaatt
     3481 tcatcgctat ttccaactat tagtggaatg gaatgaaaaa atcaatctga cagctattac
     3541 cgaggaaagc gaagtctatc tgaagcattt ctacgattct atcgctccaa tcctacaagg
     3601 ccatattcag aacgaacctc ttcggctttt agatattgga gctggagctg gatttcctag
     3661 cctacctatg aagattatct ttccgcaact agatgttacc atcattgatt ctcttaataa
     3721 acgaattaac tttttacatt tgcttgccaa agaactagag ctcgaaggtg ttcatttcta
     3781 tcatggtcgt gcagaagact ttgcacaaga taagaacttc cgtgcacaat ttgaccttgt
     3841 cacagcacgc gcagttgccc gcatgcagat tctttctgaa ttgactattc cttatttgaa
     3901 gctcaacgga aaattaatcg cactcaaggc gtccagcgca gaagatgaat tgacccaggc
     3961 aaaaaacgca ctcaatctcc tcttcgcaaa agtcatcgaa aaccacgact atactcttcc
     4021 aaatggcgac cctcgaacat tgaccatcgt cgaaaagaaa aaggaaactc caaataagtt
     4081 tccacgcaaa gctggtatgc caaataaaag acccctttaa acataagaag agcgagtttc
     4141 actaagaaac ccgctctttt attatccaat ttttgtaata ttggttgctt gaagaccacg
     4201 ttggccttgc tccacttcaa atgtcacttt ctgaccatct tccaacgact taaaaccatc
     4261 tgattgaatt tcagaaaagt gcgcaaatac atctggaccg ttttcttgag caataaaacc
     4321 aaatcccttt tctgcattaa accatttaac tgtaccttgt accatttgtg ttacctcttt
     4381 ttatttattt gtaaaactta gcaagaggaa aaacaaaaga tgaaactgat acttaaactc
     4441 taaatttatt tacattccct actgtaacag tatatttcct atatgtcaac gataaagggt
     4501 tgataagccc aataaactca ataatcatcg ccacggatta tagaatcgac cctgattaac
     4561 aaaaaataga tagattgtca cgactactag agcaagaata aatagcaaga cagcgtaatc
     4621 tattctctgt agaggctgtt gggtatacca tgttcttttt ttattttttc caaaacgccg
     4681 caattccata gccgttgaaa tcgtatcaat cctctccaag gagctgaaaa tcaaaggaat
     4741 gacaagggat agattccctt ttatacgatc catcaatttt cctttcctgg acaattccaa
     4801 accacgcgct tcttgagaca ttcgaatcgt ataaaactct tcttgaatat ctggaatata
     4861 acgcatggtc aaacttactg cgtaagcaac tttgtaggat accccaattt gattcaagct
     4921 ggaagcaaac tggctaggat gagtggtcat gagaaagata atcgctaaag gaactgtaca
     4981 aaaatacttc aagagaagat tcaccagata aaatgcttgc tgactcgtca aggaataaac
     5041 tcccagacct gatagcaagg gagtgcctgc tccgtaaagt tccactccat accgtggtgc
     5101 aaacaagtga accatcaggg cattcattgc agcaaaaaat gatcgtcaga attaaaacaa
     5161 gagagatttc tttataacga atccctgaca ttttgaacaa ggctagagaa aatactgcga
     5221 taaaaagaat caagcgggta tcataagtaa tcatagcaag aatggaaact atgagaaaaa
     5281 agagtaattt actgacagcc gataaactat gaataaagcc agttcctgga tggtaaccaa
     5341 ttagtttttg ttgactcatc ttcctctcct ttcttcctgc atataaaacg tcgttaattc
     5401 caagggatta actcccaacc tctccgccaa gtgaaaaatt gatgtttctt ttaaattggc
     5461 tcgctcaatc accatatcat cagataaaat ttctgctgga ctggcatctt caataatctg
     5521 cccatccacc acaacaacag ctctatctga ataatctagc atgagttgca tgtcatgggt
     5581 aatcatgaca atggtgtgcc cttgagcatt taattggtcc aaaaactcca tcatttcccg
     5641 ataatgccgt tgatcttgtc ctgctgttgg ctcatctagc aaaataattt ctggattgag
     5701 aaccaagata gatgctatcg ttacccgttt tttctgccca taggaaagtg ccgaaatcgg
     5761 ccaattacga aacggataca ggccacatac tttcaagata tggtgaactc ggtgttcgat
     5821 ttcttcttct gtcacccctc gtacgcgcaa accaagagca acctcatcaa agatcatcgt
     5881 ttggctaatc atttggttgg gattctgaag aacataacca atccgttctg ctcgctcttt
     5941 gacagaatct tctttgattg actgcccctt ccagagaatc tcaccctcac cctgaataaa
     6001 accacaaagc accttggcta aagtagattt cccagcacca ttttttccaa caatagctag
     6061 acgctctccc ttatgaatcg tcagttgaat atctgtaaga acttgtttgt taggatagga
     6121 aaaatgaaga tgcttgactt ctaacaaaga ctctttctct ccattttcaa agtgtagagt
     6181 cagtagagat gctatattca aagcctcaat atcaatttcc caaactgagg agaggtgttc
     6241 tgcctgcgca atcggatatc ctaaggcgcg aagagtcgat agatataagg gttcacggat
     6301 gccgttttcc tgtaacaatg aggtacgtaa taaatcatcc agtcctccat tgaacaaaat
     6361 ccgaccatca ttaatcaata caactcggtc cacctgacga tacagtacgt cctctaaacg
     6421 gtgttcgata ataatggttg tggtcccttc ttgcttgtgc agacggtcaa tcaaatcaat
     6481 cgtatcttgg cctgatttgg ggtctaaatt agcaagtggc tcatcaaaca acaaaatagg
     6541 actctcatca ataagaactc cgcccagact gacacgttgc ttttgacctc cagataaatc
     6601 ttgtggtcga tgtgccagca aatcggtcaa agacagtctt tctgcccaat ctcctacttt
     6661 ttgcttcatc accacctggc tttccatgtc gttttccaag gcaaaagcta ggtcctcggc
     6721 aactgataaa ccaatgaatt gaccatctgt atcttgaaga accgttgata cgagcaagga
     6781 cttatcataa actgaaagat taaacgcttc ctgaccatcc aatagtaaac ttccgctatg
     6841 ttcccccttg taaatattgg gaataatacc attaagacat tgtccaatcg tcgactttcc
     6901 tgaaccagat gggccaataa tcagaacttt ctctccctga taaatcgtta actgaatatc
     6961 ttttaaagtg ggttcctgtt gcgcttggta tttaaatgta aaatctttaa actcaatgat
     7021 ttttttcata ggactattat agcgtaaatt gactctgaaa aaaaggaaga atcatcagtt
     7081 tctccctttt caaataagtt catctatgat tctagagcag atgaattcta ccttcttgcc
     7141 tcacaatcgc attaaaatga taccatcaag gtccgtaaaa cttgctccat aaaagccacg
     7201 ggcatctgtc gggcatccta taatttgccc gccatttgct tcaacacgct ctataagtct
     7261 atccacttct ttcctactcg ccacattaag cgaaatcaag acttcattgc cactcgctac
     7321 tacctgaaat ggtacgcgtt gagcaaagct atctgcctgc atcaaaatca agttgccacc
     7381 ctcgggcaaa gtcgcagact taatatctcc aaacgtcgca actgcaaaaa cgattgcttc
     7441 ataaaaccga ccagctattc aaggtctgct actgctaata ctcaatgaaa atcaaaagtg
     7501 accgaggaaa cgaagccgaa gatagaactg aagttcatca aagcaagttg acaacggata
     7561 atgttgattt tcgaagagga taagttcatc caaaatgact tcatctcctt ctcttttcta
     7621 attgataggc ttcgtataga atggactgaa gaaaatagca agaattctga ttgcacaaaa
     7681 aaattgcact g
//
LOCUS       DASFRC010000102         7682 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.102, whole genome shotgun sequence.
ACCESSION   DASFRC010000102 DASFRC010000000
VERSION     DASFRC010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7682)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7682)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7682
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.102"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(21..623)
                     /locus_tag="U1087_001529"
     CDS             complement(21..623)
                     /locus_tag="U1087_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM4755996.1"
                     /translation="MRILVAEDQAMLRDALCQLLGFQDAVEAVLQAENGSQAIALLEK
                     EPVDVVLLDIEMPEQTGLDVLEWVRGQALPVKVVIMTTFKRPGYFERAVKADVDAYVL
                     KERSIADLMRTIETVLAGRKEYSPELMDILLTQRSSLTDQESHLLKLVAEGLSNKEIA
                     SQLHLSDGTVRNYMTSILSKLGAENRTAAVKIAQEKGWLV"
     gene            complement(620..1714)
                     /locus_tag="U1087_001530"
     CDS             complement(620..1714)
                     /locus_tag="U1087_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEM4755997.1"
                     /translation="MIFEKRKVPLMFFVGMVFLYFPFYYAQYSPNPTAVVLATILFAL
                     VYCSLFYTDHKLYSLLAWFYLIGYIAVMSFWGNLQFSLFIFNLSNMLGWYYKENRPTY
                     RTVSYGILLLAIILWALFGPVPFEMRAFALVIHFFGLALLIFSWIETKREALQQRLQE
                     QNASINLLLAENERNRIGQDLHDTLGHVFAMLSVKAELVQTLLDHDQIDQAKKEVADL
                     QTLVKDSMQEVRQIVQSLKQHTVAEELQILQQMLDLAGVDLVVLGGEIAEQLSLPVQN
                     KLAMVLRELANNLLKHSQASKCRLVFEKDQQELVLHYEDNGVGFTQLTGQELHTIKDR
                     LVTVKGSLEFLSLAKPTRLSIRIPFEEVVE"
     gene            complement(1723..2454)
                     /locus_tag="U1087_001531"
     CDS             complement(1723..2454)
                     /locus_tag="U1087_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM4755998.1"
                     /translation="MKALLQVESIKLSRSLGVFLLSIGMPVVFFLIFSSTVQFDDVAM
                     QKAFIQSYMLTMTGFSMSGFALFTFPTMLAEDRKNSWLTFIQHSPLPIWHYYLSKLVR
                     VLLCFVSSNVIVFAVGGLVKGVEMTAQEWVISALLLLVTSIVFLAIGLLLVQIQSEQT
                     MSVVANLLYFVLAIMGGSWMPVSLFPDWVQRICKLMPSYHANQLVTIYAQEGDFLWKS
                     LLIVLGYAIIFLGIALVLNRKSEQQ"
     gene            complement(2451..3329)
                     /locus_tag="U1087_001532"
     CDS             complement(2451..3329)
                     /locus_tag="U1087_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4755999.1"
                     /translation="MIEVQALEKIIKGRTILSNISFEIKSGECVALIGPNGAGKTTLM
                     SCLLGDRKATKGQVLLDGLAPQAQSNKEKVAVLPQENAIPTDLKVKELLRFFQAIYKD
                     SLTDVEIDSLLRFSPEQKNQLAGKLSGGQKRLLAFVICLIGKPKLLFLDEPTAGMDTS
                     TRQRFWEIVHELKDHGVTIFYTSHYIEEVEHTAERILVLHQGRLLRDTTPFAMRSEEQ
                     EKEVTLPIAFAAVVESLAEINEISYKQDTVSFKTRAIEQVWASLQEAGCRISDLEVQN
                     KTLLNSLFDKTREEEL"
     gene            complement(3584..4108)
                     /locus_tag="U1087_001533"
     CDS             complement(3584..4108)
                     /locus_tag="U1087_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HEM4756000.1"
                     /translation="MMKQKYYQSPAEITSFSPRQSVALADTKAVLNQAVADLSVAHSI
                     LHQVHWYMRGRGFMIWHPKMDEYMEEIDGFLDEMSERLITVGGAPFSTLKEFSENSQL
                     KEVPGDYNKTMEEQLERVVEVFRYLAALFQKGFDVSDEEGDSVTNDIFNVAKANIEKH
                     IWMLQAELGQAPKL"
     gene            4310..4522
                     /locus_tag="U1087_001534"
     CDS             4310..4522
                     /locus_tag="U1087_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HEM4756001.1"
                     /translation="MSEEKFDAKLEQLSGSAKEVIGKLTGDKEIEVEGLVEKGIGKAK
                     ELVEDAKDGLEGAINGIKNAFDKEEK"
     gene            4692..5120
                     /locus_tag="U1087_001535"
     CDS             4692..5120
                     /locus_tag="U1087_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HEM4756002.1"
                     /translation="MKKIVFVCLGNICRSPMAEFVMKDLTNQFHIESRATSNWEHGNP
                     IYPGTQKIFQKHKIPYDKTKTSQQISQADFEEFDVIIGMDGNNVRDLQKMAPAHAQNK
                     IFQFAEKSVPDPWYTGDFDETYEMVKKGCQDWLDRLQSFD"
     gene            5258..5680
                     /locus_tag="U1087_001536"
     CDS             5258..5680
                     /locus_tag="U1087_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756003.1"
                     /translation="MKEFKLPSIKWHDITSHFTRPKLEILSLIIILICALSVFTGRIA
                     SKQAITFNNGALQYNGYVVANKMNGQGKLTFDNGDVYEGQFKNGIFHGQGTYTSASGW
                     VYTGQFKNGYADGKGKLTTEGQAIYEGTFKQGIYQYEN"
     gene            5670..7469
                     /locus_tag="U1087_001537"
     CDS             5670..7469
                     /locus_tag="U1087_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEM4756004.1"
                     /translation="MKIKWLSVIRVIGLVFVLLYHFFIKYFPGGFVGVDLFFTLSGYL
                     TTALLIDEFAKHKKIDIVSFFRRRFYRILPPLVLTILLVLPLALLVRNDFIANIGNQI
                     AAALGFMTNFFEILSGGSYENQFSPHLFMHTWTLAIEVQYYLVWAGLVWYLTRISKSV
                     GQLRGSIFLTSISLFSLSFLAMSISSFFVDNFSTIYYSSFTHTFPFFLGSILATIAGI
                     GNTTTAFQQQVNTLTIKQAIGLFLGGLGVELLLLFTLQFSSIWTYLIGFLLSSLATAT
                     MIFAARVLHEKTEDVKEPAIILFFSSISYGIYLFHWPLLIIFTQLTNATIATGLSFVF
                     STILSTISFYILEPYIADKVGSLFGLAIDLKPYKKWLLSSFACLTIVGLGICLFAPKL
                     GSFEQESMVSNLYQAQTQLNTTRSAAENAKATSFEIQKGVIIFGDSVTVRASAAIQTA
                     LPDAQIDGTVSRNLSEIAKLINLYKQNNSLKETVVVALGTNTTDNYQELLDQLVKDFP
                     KGRRLIFVTPYDGNFPPSESISYQTGQYEKELAEKYDYISIADWYQVAKDNPPIWYNT
                     DLVHFNLESNGGEVFAQTIKNAVEAVADAPIKN"
BASE COUNT         2262 a         1731 c         1538 g         2151 t
ORIGIN      
        1 ttctccccaa tctcattcgt ttatactaac caaccctttt cctgtgcaat cttaaccgca
       61 gcggtacggt tttctgctcc cagtttggac aggatagagg tcatgtagtt gcggactgtc
      121 ccgtcagaca ggtggagctg gctggcgatt tccttattgg acagaccctc tgccaccagc
      181 ttgagtaagt gactttcttg gtccgtcaag gaactgcgtt gggttaggag aatgtccatc
      241 aactctggtg aatattcctt acgccctgcc aagaccgttt caatggtccg catgaggtct
      301 gcgatggagc gttccttgag cacataggca tccacatctg ccttgaccgc ccgctcgaaa
      361 tagcccggtc gcttgaaggt ggtcatgatg acgaccttga caggcaaggc ttgtccccgc
      421 acccattcca agacatctag gcccgtctgt tccggcattt ctatatctag tagcaccaca
      481 tctactggct ctttttccaa aagagcaatg gcctgactgc cgttttctgc ctgtaaaaca
      541 gcctcaaccg catcttgaaa gcccaagagc tgacagaggg cgtcccgcag cattgcttga
      601 tcttctgcaa ctaagattct cattctacca cctcctcaaa cggaattcgg atggacaggc
      661 gggtgggctt tgccagagaa agaaactcca aacttccttt caccgttacc aacctgtctt
      721 ttatggtatg caattcctga cctgtcaact gggtaaagcc cacaccgttg tcttcgtagt
      781 gtaaaaccaa ttcttgctgg tctttttcaa aaaccaaacg acatttgcta gcctggctgt
      841 gcttgagcag attgttagcc aactctctca gcaccatagc cagcttgttc tggacgggta
      901 agctgagctg ctctgctatt tccccgccca aaacgaccaa atccactcct gccaagtcca
      961 acatctgctg caaaatctgg agttcctctg ccacggtgtg ctgcttgagg gactggacaa
     1021 tctggcggac ctcctgcatg gagtccttga ccaaggtctg aaggtctgcc acctccttct
     1081 tggcctggtc aatctggtcg tggtctaaca aagtctggac cagctcggcc ttgacagaca
     1141 gcatggcaaa gacatgacca agtgtgtcgt gcaagtcctg accgatacgg ttgcgttcat
     1201 tctcagccag caggagattg atggacgcat tctgttcctg taggcgttgc tgaagggctt
     1261 cccgcttggt ctcaatccag ctgaaaatca gcaaggccaa gccgaaaaag tggataacaa
     1321 gtgcaaaagc tctcatctca aaaggaacag ggccaaagag agcccatagg ataatagcca
     1381 gcaacaaaat cccgtaagac accgtccgat aggtcggtcg attctcttta taataccagc
     1441 ccagcatatt ggacaggttg aagataaaga gggaaaattg caaattaccc caaaagctca
     1501 tgacggcgat atagccaatc aggtaaaacc aagccagcag ggaatagagc ttgtggtcgg
     1561 tgtaaaagag ggagcaatag accaaggcaa agagaatagt cgctaggaca actgccgtcg
     1621 gattgggact atactgggca tagtaaaagg gaaaatagag aaagaccatg cccacgaaga
     1681 acatgagtgg tacctttctt ttttcaaata tcatctgtca cctcactgtt gctccgattt
     1741 tctattcaga actagagcaa ttcctaagaa aattatcgca tagcctagga caattagcaa
     1801 ggatttccag agaaaatctc cctcttgggc atagatggtc accagctggt tggcatggta
     1861 gctgggcata agtttgcaaa tccgctgcac ccagtctgga aagagggaaa caggcatcca
     1921 ggagccaccc atgatggcca gaacaaagta gagcaagttt gccacaaccg acatggtttg
     1981 ttccgactga atttgcacca agagcaagcc aatagctaga aatacgatag aggttactaa
     2041 aagtaagaga gccgaaatta cccattcttg agctgtcatc tctacaccct taaccaagcc
     2101 accgaccgca aagacaatga cattggaaga tacaaagcag agcaagaccc gaaccagttt
     2161 ggacaggtaa tagtgccaga ttggcagggg cgaatgctgg ataaaggtca accagctatt
     2221 ttttctgtcc tctgccagca tcgttggaaa ggtgaaaagg gcaaagcccg acatggaaaa
     2281 acctgtcatg gtcagcatat aggactggat aaaggccttt tgcatggcca catcgtcaaa
     2341 ctggaccgtc gatgagaaaa tcaggaaaaa gacgacaggc atgccgatag ataggagaaa
     2401 aactcccaaa cttctggata atttaatgct ttctacttgc agcaatgctt tcataattct
     2461 tcctcccttg tcttgtcaaa taggctatta agcagggttt tgttctgaac ctctaggtct
     2521 gaaatccgac aacctgcctc ctgcaagcta gcccaaacct gctcaatagc tcgggtctta
     2581 aagctaaccg tgtcttgttt atagctaatc tcattgattt cagccaagct ctccaccacc
     2641 gccgcaaaag caatcggcaa tgtcacttct ttttcttgct cctcactccg catggcaaat
     2701 ggcgtggtat cccttagtaa ccgcccctgg tgcaaaacca aaatccgctc cgccgtatgc
     2761 tccacttcct cgatatagtg gctggtataa aaaatggtca caccatgatc cttgagctca
     2821 tggacaatct cccaaaaacg ctggcgggtc gaagtatcca tgcccgccgt cggctcgtcc
     2881 aagaagagca gcttgggctt gccaatcaga cagatgacga aggccaatag tcgcttctga
     2941 ccacccgata gcttgccggc cagttgattt ttttgctctg gggaaaagcg gagcaggctg
     3001 tcgatttcca catctgtcag actatccttg tagatagctt ggaaaaagcg gagcaattcc
     3061 ttaaccttca ggtctgtcgg aatggcattt tcttgtggta agactgccac cttttcctta
     3121 ttagactgag cctgtggagc cagaccgtcc aacaaaacct ggcctttcgt cgcctttcta
     3181 tcccccaaca aacaagacat aagcgtcgtt ttcccggccc cgtttggacc gattaaagcc
     3241 acacattctc ctgacttgat ttcaaaggaa atattggaca aaattgtccg tcctttgatg
     3301 attttttcta gtgcttgtac ttctatcatt tttctacctc ctacttcttg aacatcttac
     3361 atacatagta tatctagaaa agggaagccc tactagaaga ctttgtcatt gactcatgtg
     3421 acaaatgtca tattaaactc aatgaaaatc aaaagtagct tagaaaacga agtcgaagat
     3481 agttctggag ttcattaagg caggttgaca acggataatc ttaattttca aagaggatta
     3541 aataatgcag caaaaaaaga gtcctactgg acccttcatc tgtttacaac ttaggagctt
     3601 gaccaagttc tgcctgcagc atccaaatat gtttttcaat attagccttg gctacattga
     3661 aaatgtcgtt ggttacactg tcaccttctt catcactgac atcaaatccc ttttggaaaa
     3721 gagcagctag atagcggaac acctctacca cacgctccaa ttgctcttcc atcgttttat
     3781 tgtagtcacc aggaacttcc ttaagctgac tattttcact aaactcttta agggtagaaa
     3841 atggtgcccc acctacggtg attaaacgct cactcatctc atccaaaaaa ccatcaattt
     3901 cttccatata ttcatccatc tttggatgcc aaatcataaa accacgtcca cgcatatacc
     3961 aatgaacttg atggaggata gaatgggcaa ctgacaaatc tgctactgcc tgattcaaaa
     4021 ctgccttggt atcagccaat gctactgatt gacgtgggct gaaggaagta atttctgctg
     4081 gagattgata atatttttgt ttcatcatat atcatccttt cttttattta taattattat
     4141 aaataaaaga agaaaaaaat gcaagaatta tccctcatcc tctgacttat tggcagacaa
     4201 atcccttgct atattaactt atatacgata gactagtaag taagaatagt atgtgatttt
     4261 ctttttagaa aatcatcgcc cccatatgtg tatatcaagg aggaatttta tgtcagaaga
     4321 aaaatttgac gcaaaactag aacaactatc tggctctgca aaagaggtaa ttggtaagct
     4381 gaccggcgac aaggaaatcg aagttgaagg acttgttgag aaaggaattg gcaaagcaaa
     4441 agagctagtc gaagatgcaa aagatgggct tgaaggtgcc attaacggca tcaaaaatgc
     4501 tttcgacaaa gaagagaaat aaacaaagag ttcaatatag ataggattgg tcgtgcattg
     4561 tttgataatg aacattacac ttaatttggt cttttaccta tagcccgaac aaaaatatac
     4621 aagagagggg aactcagaca tttacctgtc gggtctacct tctcttttct tatgccacga
     4681 aaggagaatc tatgaaaaaa atcgtttttg tctgtcttgg aaatatttgt cgtagcccta
     4741 tggctgaatt tgtcatgaaa gatttgacaa atcaatttca tattgaaagt cgtgctactt
     4801 caaactggga gcatggtaat cctatctacc ctggaacaca gaaaattttc caaaagcaca
     4861 agattcccta tgataagacc aaaacttctc aacaaatctc tcaagcagac tttgaggaat
     4921 ttgatgttat catcggtatg gacggcaata atgtccgaga tttacagaaa atggcaccag
     4981 cacatgcaca aaataagatt tttcaattcg cagaaaaatc cgtaccagac ccttggtata
     5041 ctggagattt tgacgaaacc tacgaaatgg taaagaaagg ttgtcaagac tggttggaca
     5101 ggttacagtc atttgactaa gaataagatt tcctatgtaa tgtttttgta atatttgtaa
     5161 aaaaatggta aactatttct gactgaactg ataatttctt actgtatcct agaaagaact
     5221 gattagcgtc ggtcaaatct tatgaaagag taaaacgatg aaagagttca aattacctag
     5281 tataaaatgg catgatataa caagtcattt cacccgtcca aaacttgaaa tcctctccct
     5341 tattatcatc ctcatctgtg ccctctctgt atttacaggg cgaattgcca gcaagcaagc
     5401 cataactttc aataatggcg ccctgcagta caacggttat gtggtcgcaa ataaaatgaa
     5461 tggtcaagga aaattgacct ttgataatgg agatgtctac gaaggacaat ttaaaaatgg
     5521 aattttccac ggtcaaggaa cctacacatc tgcaagtggg tgggtttata ccgggcaatt
     5581 taaaaacggc tatgccgatg gaaaaggaaa attgaccacc gaaggacagg ctatctacga
     5641 aggaactttt aaacagggga tttatcaata tgaaaattaa atggttatct gttatacgtg
     5701 tgattggatt agtctttgtc ctactctatc atttctttat caaatatttc ccaggtggct
     5761 ttgtgggggt tgacctcttc tttaccctgt ctggatattt gacaactgcc cttttgattg
     5821 atgagtttgc aaaacataaa aaaatagata ttgtcagctt tttcagaaga aggttctatc
     5881 gcattctccc ccctctggtt ttaacgattc ttttggttct tccacttgct ctacttgtcc
     5941 gcaatgattt cattgccaat atcggcaatc agatagccgc tgcgctcgga ttcatgacaa
     6001 acttctttga aattctatca ggtggtagtt acgagaatca attttcacct catctattta
     6061 tgcatacttg gacactagcc atagaagttc agtattacct tgtctgggct ggtttagttt
     6121 ggtatctgac tcgcatctca aaaagtgtgg ggcaactacg tggatcaatt tttctaacat
     6181 ctataagcct cttctcgcta agttttttag caatgtctat ctcaagtttc tttgtagata
     6241 atttctcaac catttactac tcgagcttca cacatacctt cccattcttc ctcggaagca
     6301 ttctcgcaac catcgctggt atcggaaata caacaactgc cttccagcaa caagtgaata
     6361 cattgactat caaacaagct ataggtctgt ttcttggagg actaggagta gaacttcttc
     6421 ttctctttac tcttcaattc agttccatct ggacctatct aattggtttt cttctatcca
     6481 gtttagctac agcaactatg atttttgctg ctcgggtact tcacgagaaa accgaagatg
     6541 tcaaagaacc tgcaattatc ctcttctttt caagtatttc ttatggtatc tacctcttcc
     6601 attggccctt gctcattatc tttacacaac tgacaaatgc cactatcgct acgggattat
     6661 cctttgtttt ttctactatc ctatcaacta tttccttcta tattctagaa ccatatattg
     6721 ctgataaagt aggaagcttg tttggattag caatagactt aaaaccctat aaaaaatggc
     6781 ttcttagcag ctttgcttgc ttgaccatag ttggcttagg tatctgtctg tttgcaccaa
     6841 aattaggaag ttttgaacaa gagagtatgg ttagcaatct ttatcaagct cagacccaac
     6901 taaatacaac acgatctgct gctgaaaacg ctaaagctac tagttttgaa attcaaaaag
     6961 gagttatcat ctttggcgat tctgttactg ttcgcgcaag tgctgccata cagaccgcgc
     7021 taccagatgc acagatcgat ggaactgtca gtcgaaatct ctctgaaatt gctaaattga
     7081 taaatcttta taagcaaaat aatagcttga aagagactgt agttgtagcc ctaggtacaa
     7141 atactacgga taattatcag gaactactag accagctagt caaagatttt cctaaaggac
     7201 gtcgccttat ttttgtcact ccttacgatg gaaacttccc tccgagcgaa tccatttctt
     7261 atcaaactgg tcaatacgag aaagaattgg ctgaaaaata tgattacatt tccattgcag
     7321 actggtatca agttgcaaag gataatccac caatttggta caataccgac cttgttcatt
     7381 tcaatcttga aagtaatgga ggcgaagtct tcgcccaaac gataaaaaat gctgttgaag
     7441 ccgttgctga tgctccaatc aaaaactaga tttatacatc atcatcctct gagaatttct
     7501 cggaggattt ttgcacgatt ttccgataaa tccagcgcga actctaagaa atggcgctgt
     7561 gcctgagctc agtctcaata aatcttgtga aataagccac ttctacaacg gatggcaaag
     7621 cgaagatgac aagttaaaac tcctaccttt tacagtagga gttggtgtca aattgactat
     7681 tt
//
LOCUS       DASFRC010000103         7667 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.103, whole genome shotgun sequence.
ACCESSION   DASFRC010000103 DASFRC010000000
VERSION     DASFRC010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7667)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7667)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7667
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.103"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            67..2457
                     /locus_tag="U1087_001538"
     CDS             67..2457
                     /locus_tag="U1087_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HEM4756005.1"
                     /translation="MLAQIIVDVPLMQTDQAYSYRVPAELEEGLKVGVRVHVPFGKGN
                     RLIQGIVVDLIDENDENNLQDLKELAEVLDYSPVLNQEQFWLADQMRKSVFSYKITLL
                     KSMLPSLLNSSYDKLIRPGLGLEMAEQISLFGDKEQIRFSDLDVTEQGKIMRLAQSGK
                     ILVDYVAKDKKQIKTEKWYRVCLEKLREADISNRAKKRQQLKKFLLEHSEDQLLSNLK
                     SDYSADTLRYFQEKGYIEVWEEEVSRTQGVFDKVEKTQALDLNPEQAIAVREIVASIG
                     QESQTFLLQGVTGSGKTEVYLQVIDRVLKMGKTAIMLVPEISLTPQMTNRFISRFGQQ
                     VAILHSGLSDGEKYDEWRKIEAGNAQVVVGARSAIFAPLTNLGVIIIDEEHEATYKQD
                     SNPRYHARDVAKLRADYNRATLVLGSATPSLETRARASRGVYGRLTLNQRANPLARIP
                     EVEVVDFRDYIGQQEASNFTPVLIDKIREKLARKEQVVLMLNRRGYSSFVMCRDCGSV
                     DQCPNCDISLTLHMDTKTMNCHYCGFQKGIPQTCPNCQSRSIRYYGTGTQKAYDELQE
                     LLPEARILRMDVDTTKKKGAHEDLLERFGRGEADILLGTQMIAKGLDFPNVTLVGVLN
                     ADTALNLPDFRSSERTFQLLTQVAGRAGRADKEGEVLIQTYNPNHYAIAFAKEQDYEG
                     FYRYEMGIRKNLGYPPYYFTVGLTFSHKSEEFVVKKAYEAVAFLRQHLTDAIQILGPT
                     PKPIARTHNLYHYQIILKYRHEDRLEEVLNQILDWTQERENQDLRLIIDNEPQNMM"
     gene            2588..3526
                     /locus_tag="U1087_001539"
     CDS             2588..3526
                     /locus_tag="U1087_001539"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HEM4756006.1"
                     /translation="MTKLIFMGTPAFSAMVLRGLLADGNYNILAVVTQPDRAVGRKKV
                     IQMTPVKEVALEYNLPVYQPEKLSGSQEMDELMNLGADGIVTAAFGQFLPTKLLNSVD
                     FAVNVHASLLPKYRGGAPIHYALINGDERAGVTIMEMVKEMDAGDMISSDSIAIEESD
                     NVGTLFEKLAVVGRDLLLQTLPAYIAGDLKPVAQNPEQVTFSPNIQPEEEVLDWNKTA
                     RQLFNHIRGMYPWPVAHTYWQGERFKIQEAVEAEGEGPVGRVIARSKKELIIATGQGA
                     LSLKTVQPAGKPKMTIADFLNGAGRDIAVGDQFGDQ"
     gene            3513..4826
                     /gene="rsmB"
                     /locus_tag="U1087_001540"
     CDS             3513..4826
                     /gene="rsmB"
                     /locus_tag="U1087_001540"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HEM4756007.1"
                     /translation="MVINKHETARSLALSVLEQVFDQGAYSNIALNKALESSRLSAQD
                     KGLATELVYGTVSRKITLEWYLAHFIEDREKLDTWVYYLLMLSLYQLVYLDKLPTHAV
                     VNEAVNIAKRKPGTDKFVNAILRKLSQDSLPKPADIKRKNKRLSVQYSVPVWLVQTLI
                     AEYGDERAEKIFQSLHDRNKASVRVTDGQQVEQLAEELGAQHSQLSPVGLVKSHGHFA
                     GTDYFKKGLITIQDETSQLVAPTLGIQGDEIILDACAAPGGKTCHMASYLTDGKVYAL
                     DLYDHKLNLIEENARRLGLEDKIETKGLDASRVHEEFGPDTFDKILVDAPCSGIGLIR
                     RKPDIRYNKASMDFDSLKTIQLQILDSVCQSLKIGGIITYSTCTIIAKENQEVIQEFL
                     QNHPNFEQVTLEHPQTDIMVDGCLLITPEQYKTDGFFIGQLRRKS"
     gene            4864..5601
                     /locus_tag="U1087_001541"
     CDS             4864..5601
                     /locus_tag="U1087_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Stp1/IreP family PP2C-type Ser/Thr phosphatase"
                     /protein_id="HEM4756008.1"
                     /translation="MEIALLTDVGQKRSNNQDYINRYKNRAGIDLVVLADGMGGHRAG
                     HIASEMAATDLGAAWVDTQLVTLNDVREWMVAIIDAENQKIHELGQTEEYKGMGTTLE
                     AVVVIDNQMIYAHVGDSRVGLIRDGEYTRLTNDHSLVGALVRAGQLTEEEAQRHPQKN
                     IVTQSIGQAEPIEPDIALKTLEVGDYVLINSDGLTNMIPTEDIRDIVLSDVSIESKVE
                     TLVRFANNAGGLDNITVGLLHITEEAR"
     gene            5601..7595
                     /gene="pknB"
                     /locus_tag="U1087_001542"
     CDS             5601..7595
                     /gene="pknB"
                     /locus_tag="U1087_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014635866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Stk1 family PASTA domain-containing Ser/Thr
                     kinase"
                     /protein_id="HEM4756009.1"
                     /translation="MIQIGKIFAGRYRIVRQIGRGGMADVYLARDLILDGEEVAVKVL
                     RTNYQTDQIAIQRFQREARAMAELDHPNIVRISDIGEEDGQQYLAMEYVNGLDLKRYI
                     KENAPLSNDVAVRIMGQILLAMRMAHTRGIVHRDLKPQNVLLTSNGVAKVTDFGIAVA
                     FAETSLTQTNSMLGSVHYLSPEQARGSKATIQSDIYAMGIILFEMLTGRIPYDGDSAV
                     TIALQHFQKPLPSVREENANVPQALENVVLKATAKKLNERYKSVAEMYADLASALSMD
                     RQNEPRVELEGNKVDTKTLPKLSQANVETKVPHTNSSAQVSATDKGSGKKEVAKSGNK
                     PVSKPRPGIRTRYKVLIGAILLTVIAAGLMFFNAPRTVTVPDVSGQTVEKATEMIEVA
                     GLEVGNITEEATATVDEGLVIRTSPAAKTTRRQGSKIDIVVATAALASIPDVVDKESD
                     TARQELEALGFQVTIKEEYSEKVAQGLVIKTDPGANSSAEKGAKITLYVSKGVAPQVV
                     PNVVGKSQENATQILQTAGFSIGTITQEYSSSVTAGQVISTDPVANTELAKGSIINLV
                     ISKGKELIMPDLTSGNYTYSQARSQLQALGVNAESIEKQEDRSYYSTTSDIVIGQYPA
                     AGATIDGTVTLYVSVASTRTSSDSSAGSSTSTSTSTGSGQ"
BASE COUNT         2280 a         1468 c         1875 g         2044 t
ORIGIN      
        1 ttatacataa agtgaacctt ggtcgcatca gtcgtggtat tagaaggtaa aataaatgga
       61 gatggtatgt tagcacagat tattgtagac gttcctttga tgcagacaga tcaagcttat
      121 tcctatcgag ttccagctga gttggaagag gggctcaagg ttggcgtgcg tgtccatgta
      181 ccctttggta agggaaatcg gctgattcaa gggattgtag ttgacttgat tgatgaaaat
      241 gacgaaaata acttacaaga cttgaaagag cttgccgagg ttttggacta tagtcctgtt
      301 cttaatcaag agcaattttg gttggcagac cagatgagga agtcggtctt ctcctataaa
      361 attactctct taaaatccat gctacccagc ttgctcaatt cttcctatga caaattgatc
      421 cgtccagggc ttggtttgga aatggcagag cagattagtc tgtttggtga taaagagcag
      481 attcgttttt ctgacttgga cgtgacagag caagggaaaa tcatgcgtct ggcccagtca
      541 ggaaaaatct tggtagacta tgtggccaag gataagaagc aaatcaagac agaaaaatgg
      601 taccgagttt gtctggagaa attacgagaa gcagacatta gcaatcgggc taaaaaacgg
      661 cagcagttaa agaaatttct tctggaacac tcggaagacc agcttctttc aaacctaaaa
      721 tcggactatt cagctgatac gctccgctat ttccaagaaa aaggctatat agaagtttgg
      781 gaagaggaag tgtcgcgaac tcagggtgtt tttgataagg tagaaaaaac gcaggccttg
      841 gatttgaatc cagagcaggc cattgcggtt cgtgagattg tggcctctat cggtcaggaa
      901 agtcagacat ttctactgca aggggtgaca ggctctggga agacggaagt ctatctccag
      961 gttattgata gggtcttgaa aatggggaaa acggctatta tgctggtgcc tgaaatttcc
     1021 ttgacccctc agatgaccaa tcgttttatt tctcgttttg gccagcaggt tgccatttta
     1081 cactcgggct tgtctgatgg tgagaagtac gatgagtggc ggaagattga ggcggggaat
     1141 gcccaggtgg ttgtcggggc ccgttcggcc atttttgccc ctttgacaaa cttgggtgtt
     1201 atcatcattg atgaggagca tgaagcgacc tacaagcagg acagcaatcc acgctatcat
     1261 gcgcgtgatg tggcaaagtt gcgggcagac tataatcgag cgaccctggt cttggggtct
     1321 gctacgccga gtcttgaaac acgggctcgg gctagtcgag gagtctatgg aagactgact
     1381 cttaaccaga gggctaatcc attggctcgt attccagaag tggaagttgt ggatttccgt
     1441 gattatatcg gtcagcagga ggctagtaat tttacccctg ttctgattga taagataaga
     1501 gaaaaattgg ctcgtaagga acaggtcgtt cttatgttga ataggcgtgg ttattcttct
     1561 tttgtcatgt gtcgtgattg cggtagcgtt gaccagtgtc ccaattgtga tatttcccta
     1621 acgctccata tggacacaaa aacgatgaat tgccattatt gtggttttca aaaggggatt
     1681 cctcagacct gtccaaactg tcaaagtcgt tctattcgtt attatgggac gggtacgcaa
     1741 aaggcctacg atgaattgca ggagctcttg ccagaagcta gaattttgcg tatggatgtg
     1801 gatactacca agaaaaaagg tgctcatgag gacttgctcg aacggtttgg tcgaggcgaa
     1861 gcggatattc ttctgggaac tcagatgatt gccaaaggct tggattttcc aaatgtgacc
     1921 ctagttggcg tgctcaatgc ggatacggct ctgaatttgc ctgattttcg gtcttctgag
     1981 cggaccttcc agttgctaac tcaggtagct ggtcgggctg gtcgagctga taaggaaggg
     2041 gaggtcctga ttcagaccta taaccccaat cattatgcca ttgcttttgc caaagagcag
     2101 gattatgaag gtttctatcg ttatgagatg ggcattcgga aaaatcttgg ttatccacct
     2161 tactatttta cggtgggtct aaccttttcg cacaagtcag aagaatttgt cgtgaaaaaa
     2221 gcctatgaag ctgtagcctt tctccgtcaa cacttaacag atgcaattca aatcttggga
     2281 ccgacgccca agcctattgc cagaactcat aatctctacc actaccagat catcttgaaa
     2341 tatcggcatg aagaccgttt ggaagaggta ttgaatcaga ttttggattg gacacaggag
     2401 agagaaaatc aagatttgcg actgattatt gacaatgaac cgcagaatat gatgtgaggt
     2461 cactattgac cttgcatttt tttgttttaa gaacctttga ttaaggaaaa aataagcaaa
     2521 aatgatataa ttaggggata gtataattga tatgaatcag aaaatgaaaa ggagatgaga
     2581 cacgaatatg acaaagttga tttttatggg aacgccagcg ttttcagcga tggtcttaag
     2641 agggctctta gctgatggaa attataacat actggcagtt gtaacccagc cagaccgagc
     2701 tgttggacga aaaaaagtca tccaaatgac acctgtgaaa gaagtagcct tggaatacaa
     2761 tttaccagtc tatcaaccag agaagctatc tggaagtcaa gaaatggatg agctgatgaa
     2821 tttaggagca gatgggattg tgacggcagc ttttgggcaa ttcctaccaa ccaaattatt
     2881 gaactcagtt gactttgcag tcaatgttca tgcctctctt cttcctaaat accgtggcgg
     2941 tgcccctatc cattacgctt tgattaacgg tgatgaacgt gctggcgtaa ccatcatgga
     3001 aatggtcaag gaaatggatg ccggtgacat gatttccagc gatagcattg ctattgaaga
     3061 aagcgacaac gtcggcacct tgtttgaaaa gttggctgtt gttggtcggg atttattatt
     3121 acaaacctta ccagcctata ttgctggtga cttgaaacca gtcgctcaaa atccagaaca
     3181 ggtaaccttc tcaccaaata tccagccaga agaagaggta ctggattgga ataagacagc
     3241 tcgtcaacta tttaatcaca ttcgcggtat gtacccgtgg cccgttgccc acacctattg
     3301 gcaaggggaa cggtttaaaa ttcaagaagc tgtagaagca gaaggtgaag gaccagttgg
     3361 tcgggttatt gctcgaagca agaaagaatt gatcattgcg acaggtcagg gagccctttc
     3421 tctgaaaact gtccagccag ctggtaagcc aaaaatgacc attgcagact ttttaaatgg
     3481 tgcaggtcga gatattgcag taggagatca atttggtgat caataaacat gaaacagcaa
     3541 gaagtctagc cttatctgta ttggaacaag tctttgatca aggtgcttac tcgaacatcg
     3601 ctctcaataa ggctctagaa tcttctcgtt tatcagcaca ggacaagggc ttggcgaccg
     3661 aattggttta tgggacggtt tctcgtaaaa ttaccctaga gtggtatttg gcgcatttta
     3721 tcgaagatag ggaaaagttg gacacttggg tctactatct cctcatgttg agcctctacc
     3781 agttggtata tttggacaaa ttgcctaccc acgcagttgt caatgaggca gttaatattg
     3841 ccaagcgaaa gcctgggaca gataagtttg tcaacgctat tttgcgtaag cttagtcagg
     3901 attcgttgcc gaaaccagca gatattaaaa gaaagaacaa acgtctatcc gttcagtatt
     3961 ctgtgccagt ttggttggtc caaaccctga ttgcagaata tggcgatgaa cgtgcagaga
     4021 agattttcca aagcttacat gatcggaata aggccagcgt acgcgtgaca gatggtcaac
     4081 aagtggagca attggcagag gagctaggcg cccaacactc acagttatca ccagttgggt
     4141 tggttaaatc ccatggacac tttgcgggga cagattattt caagaaagga cttatcacca
     4201 ttcaagatga aaccagtcaa ttggtagctc cgactttggg tattcaagga gatgaaatca
     4261 tcttggatgc ctgtgcagct ccgggtggaa agacatgtca tatggcaagt tatcttacgg
     4321 atggaaaagt ttatgcgttg gatttatatg atcataaact aaacctgatt gaagaaaacg
     4381 cacgtcgttt aggtctagaa gataagattg agaccaaagg tctggacgcc agtcgtgttc
     4441 atgaggaatt tggtccagat acctttgata aaatcctagt ggacgcccct tgttcaggta
     4501 ttggacttat ccgccgtaag ccagatattc gttataacaa ggcatcgatg gactttgatt
     4561 ctctaaagac tatccagttg cagatactgg acagtgtttg ccaaagcttg aaaattggtg
     4621 gtataataac ctatagcaca tgtacgatta ttgctaagga aaaccaagag gttattcaag
     4681 aatttctgca aaaccatccc aattttgaac aggtgacact agaacaccct caaacagata
     4741 ttatggtgga tggttgcttg ttgataaccc ctgaacagta taagacagat ggctttttca
     4801 tcggtcaact tagacgaaaa tcctagaata agaggaggaa gttgcttagc aacgataaaa
     4861 attatggaaa ttgcattact tactgatgta ggacagaaac gttcgaacaa ccaagactat
     4921 atcaatcgct acaaaaaccg cgcagggatt gatttggtcg tgttagctga tggaatgggt
     4981 ggtcaccgtg ccggccatat tgctagtgag atggcagcaa cagatttggg agctgcttgg
     5041 gttgatactc aattagtgac tttgaatgat gtccgtgaat ggatggttgc aatcattgat
     5101 gctgaaaacc aaaagattca tgaacttgga cagacagaag aatacaaggg gatgggaaca
     5161 actcttgagg cagttgttgt catcgacaat caaatgatct atgcccatgt tggagattca
     5221 cgagttggat tgattagaga tggcgaatat acacgtctaa ctaacgacca ttcgctggta
     5281 ggtgcccttg ttcgagctgg tcagctcaca gaagaagaag cacagcgtca tcctcaaaaa
     5341 aatattgtaa cgcagtccat tggacaagcc gaaccaattg aaccagacat tgctttgaaa
     5401 actcttgagg ttggagatta tgtccttatt aacagcgatg gcttaaccaa tatgatacca
     5461 accgaggaca ttcgtgatat tgtattgagt gatgtttcaa ttgaaagcaa ggtagaaaca
     5521 cttgtacgtt ttgccaataa tgcaggcggt ctagataata ttacagtagg tttgcttcac
     5581 attacggagg aggctaggta atgattcaaa tcggtaagat ctttgccggt cggtatcgaa
     5641 tcgttcggca aattggtcga ggcggtatgg cagatgttta cctagcaaga gatttgattt
     5701 tagatggaga agaggttgct gttaaagttc ttcggaccaa ctatcagaca gatcaaattg
     5761 ctatccagcg ttttcaacgt gaagcgcgtg ccatggcaga acttgaccat cccaatatcg
     5821 ttcgtatttc ggacatcggt gaagaagatg gtcaacagta tctggctatg gaatatgtca
     5881 atggcctcga tttaaaacgt tatataaaag aaaatgcacc actttccaac gatgttgcgg
     5941 tgcgaattat gggacagatt ctccttgcta tgcgcatggc gcacacgaga ggaattgtcc
     6001 atcgagattt gaaacctcag aacgtccttt tgacttccaa tggagtcgct aaagtaacag
     6061 actttggtat tgcagttgcc tttgctgaaa cgagtttgac acaaaccaac tccatgttgg
     6121 gttctgttca ctatctttca cctgagcagg cgcgtggttc gaaagcgacc attcaaagtg
     6181 atatttatgc gatgggaatc atcctttttg aaatgttgac gggtcgcatt ccctatgatg
     6241 gagacagtgc tgtgacgatc gctcttcagc atttccaaaa acctctccca tctgttagag
     6301 aagagaatgc caacgtacct caggccttag aaaatgttgt actaaaagca acggcaaaaa
     6361 aattaaacga gcgctataag tcggttgcag aaatgtatgc agatttagct tcggctctat
     6421 ccatggatcg tcagaatgaa cccagggttg aactagaagg gaacaaggtt gatacaaaaa
     6481 ccttgccgaa actctcccaa gccaatgttg aaacgaaagt accgcataca aacagttctg
     6541 ctcaagtttc tgcgacggat aaggggtctg gtaagaaaga agtggcgaag tcgggaaata
     6601 agcctgtttc aaaaccaagg ccaggcatac gtacacgcta caaagtcttg ataggagcta
     6661 ttttgttaac agtcatagcg gctggactca tgtttttcaa cgctccacga acagttacag
     6721 tccctgatgt atctggtcaa accgttgaaa aagctacaga aatgattgaa gtggcaggat
     6781 tggaagttgg aaatatcaca gaagaagcga cagcgactgt agatgaaggc ttggtaatac
     6841 ggacctctcc ggctgcaaag acgaccagac gtcaagggag taagattgat attgtagtag
     6901 caacggctgc gctggcatct attccagatg tggtggataa ggagtctgat actgcgcggc
     6961 aggaattgga ggcccttggt ttccaagtga caataaaaga agaatatagc gaaaaagttg
     7021 cccaaggact cgttatcaaa acagatccag gagcaaatag ttctgctgag aagggtgcaa
     7081 aaattaccct ttacgtttcc aaaggagtgg cgccacaagt tgttccaaac gttgttggaa
     7141 aaagtcagga gaatgctact caaattcttc agacagcagg cttcagcatt ggaaccatta
     7201 ctcaggaata tagctcatct gttactgcag gtcaggttat cagcacagat cccgttgcca
     7261 atacagagtt ggcaaaaggt tctatcatca atctagttat ttcaaaagga aaagaattga
     7321 ttatgcctga tttaacatct ggcaattaca cctattcaca ggcgcgtagt caattacaag
     7381 ccttgggtgt caatgcggaa agtattgaaa aacaagaaga tagaagctat tattcaacga
     7441 caagtgacat cgtcattgga caatatcctg ctgctggagc aacaattgat ggaacagtta
     7501 ccttgtatgt ctctgttgca tcaaccagaa ccagtagcga ttcttcagca ggaagttcca
     7561 caagtacaag tacttcaaca ggtagcggac aataaagatg aataaggttg gggagatacc
     7621 caatgtcatt aagttatcta acctatcaca ttttgtgatg ggttagt
//
LOCUS       DASFRC010000104         7595 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.104, whole genome shotgun sequence.
ACCESSION   DASFRC010000104 DASFRC010000000
VERSION     DASFRC010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7595)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7595)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7595
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.104"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            93..374
                     /locus_tag="U1087_001543"
     CDS             93..374
                     /locus_tag="U1087_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000371962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756010.1"
                     /translation="MDIDQLLELLKLKLGISTTLRDKPLEKILDAVISELSQTFGVEL
                     DSKRADHEMFVVDFAAYRYEGGVDMPRHLQWRLHNLQVSSKGETSDVES"
     gene            361..660
                     /locus_tag="U1087_001544"
     CDS             361..660
                     /locus_tag="U1087_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016356241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head closure protein"
                     /protein_id="HEM4756011.1"
                     /translation="MWNHEITLIANKITGKDKLKQNIIEEVKTVLLCRKKSITRSEFY
                     QANQAGIRPSLVVDIHSFEYDNQELAEFGGKRYRIIKTYPVDIETIELTLTEKLS"
     gene            657..1016
                     /locus_tag="U1087_001545"
     CDS             657..1016
                     /locus_tag="U1087_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000060159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HEM4756012.1"
                     /translation="MSLTGDLANEIAKAMAEYSEEIEDKIDLIAEDVVNEAVNELKAT
                     SPKRHGKYARNWRFKKNAKGSYVIYNAAPTYRLTHLLENSHLLRNGGRSKAQPHIKPV
                     EEKVKENFEKRIKELGR"
     gene            1013..1336
                     /locus_tag="U1087_001546"
     CDS             1013..1336
                     /locus_tag="U1087_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001847815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756013.1"
                     /translation="MKLSEFADILEQAGLPVTYRAYQEGNVPDMPYLVYFESNPIVNS
                     ADNKRNHEIKSVVVELAFERKDEDLEERLEELWSNHELFFEAQEETFIETERLYVKPY
                     TVYLY"
     gene            1349..1924
                     /locus_tag="U1087_001547"
     CDS             1349..1924
                     /locus_tag="U1087_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006150474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEM4756014.1"
                     /translation="MENKVTYGLKNVHVAPITNISAETGVLTYGEIFRFPGAMEITLE
                     PKGESGAIQADDIDYHFMNANEGYEGKWKVPHIIDQFATKILGEIKDTETGVLTEKGD
                     AEPTPFALMFEFSGDKNKTRHVLYYCSASRPATGSKTKSGTSVNERELTFNASPRPLD
                     TVVKRSVTSADKKEVYDNWFKQVYEPVAVSR"
     gene            1936..2355
                     /locus_tag="U1087_001548"
     CDS             1936..2355
                     /locus_tag="U1087_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001227145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756015.1"
                     /translation="MRKIIPIGDQEYELATNGYTPIAYKEEFGKDYFQDLFSMLNSQA
                     LLSELDKLEPGQELQASDIDMSVLADFDMTFFNRLFWTFAKSANPRIKPYAQFFMEME
                     EFPVQEIGRDLMEMLNASMQTKKKQTRQNLQAMKSLQ"
     gene            2663..5416
                     /locus_tag="U1087_001549"
     CDS             2663..5416
                     /locus_tag="U1087_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000918321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HEM4756016.1"
                     /translation="MASNIKGIKIEIDGDTQPLQKALKDVNKNATEATKELRQIDKAL
                     KFDTGNVTLLTQKQEVLQQQVSNTKEKLETLRQAQAQVEKQFQNGDIGADQYRAFQRE
                     LETTQNVLKGYENKLENVNRALANNGQAVETNVSQLNNLQSEQSQLASEMDKVTSAFK
                     LQESELGQNASESEKVALAQKKIAAQSEIVEKQISNLEKQLSLTKKEYGENSTEANKM
                     EAELNQAKTALNNLNNEMNETKSAANGAQDGLEGMTKIARAEALQNVSEKLSAVSDKL
                     LEVGTDAMEAAAQVQASNAQFRTVFGDMESQARQSLNAIGDEMDIVPERLQGSFTQMA
                     SFAKTSGMETADALDLTTRATRAAADGAAFYDKSIEEVTENLQSFLKGNYENDAALGI
                     SATETTRNAAANKLYGKSFNELSEAQKQLTLLQMVEDGNALSGALGQAARESDGLENV
                     LGNLKQSGTNALAAIGQPILEMLIPVFQSLADIVNNVATWFTNLSPTIKNIVVIIGML
                     VVAVGTLLPIILAVVSGFQLLMGGLAGLSVGIMPLIGIIAGVIAGIVLLVVAIKELWQ
                     NNEGFRTAVTEIWNAIMSVINTIVQQISDFVMSIWETLSTWWAENQELIRATAETIWN
                     AIQSVIQTVMSILGPLIEASWNNIQLVISTVWEVIKTVVETAINVVLGIITAVMQIIN
                     GNWSGAWETIKGVFSTVWNGIQSIVQTLLSAIQSYIGNVMSGISGTISNIWNAISGTV
                     SNILNGISNTVSNIWNGIKNSISNAINGAKDVVSNAINAIKGFFNFEFKWPHIPLPHF
                     SISGSINPLDWLKGGLPKIGVEWYAKGGILTKPTAFGMNGNNLMVGGEAGNEAILPLN
                     DKTLGAIGRGIAQTMGGSTPTINITITGNVVREEADITKIANQVAQRIADELQRKTQL
                     RGG"
     gene            5419..6141
                     /locus_tag="U1087_001550"
     CDS             5419..6141
                     /locus_tag="U1087_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006150465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEM4756017.1"
                     /translation="MIRHNELVIDGVKTSSFPFKVIVHESPSVTLGDSKTNLLEHDGI
                     SGAIVQTNKHRGLIEKSYTIYLVKPTEEQLNKFMSLFIREKFWLENERVKTTRLWCYK
                     ASATDAEQEKPGLYVTKVTFTCHPTKFFKGTDSQTLTGNGVLKVQGSALAFPKITVVG
                     QSASETSFTIGNQVIKLEKLSESLVMVNDPDNPSFKTASGKLIKWAGDFITVDTAKGQ
                     NVGVVLGPGIQSLKFETVWGWA"
     gene            6142..7323
                     /locus_tag="U1087_001551"
                     /pseudo
     CDS             6142..7323
                     /locus_tag="U1087_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001918212.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
BASE COUNT         2352 a         1487 c         1814 g         1942 t
ORIGIN      
        1 gaacctgaac ttccagaggg cgacaagcct gctgatgaat cagtagagaa accaaagcgg
       61 aagcgtacca ctaagaaagc agaggaatag tcatggacat tgatcagcta ttagaactgc
      121 ttaaactgaa gctaggcatt tcaaccactc tcagggataa gccgttggag aaaattcttg
      181 atgccgtcat ttctgaatta tcacagactt tcggtgttga attggattct aaaagagctg
      241 atcatgagat gtttgtggtt gatttcgctg cttatcgcta tgaaggtggt gtggacatgc
      301 cgcgtcatct tcaatggcga ttacacaatc tgcaagtttc atcaaaagga gagactagcg
      361 atgtggaatc atgaaatcac tctgatagca aataaaatca ctgggaaaga caaattgaaa
      421 cagaacatca ttgaggaagt caagactgtt ctgttgtgtc gcaagaagtc aattaccagg
      481 tcagagtttt accaagccaa tcaggcaggc attcgtccaa gcctagttgt cgatattcac
      541 agttttgagt acgacaatca agagttggct gaattcggag gtaaaagata ccgcatcatc
      601 aagacttatc cagttgatat tgaaactatt gaattgacct tgacggagaa attatcatga
      661 gcctaactgg tgatttagcc aacgagattg ctaaggcaat ggcagaatat tccgaagaaa
      721 tcgaggataa gattgaccta attgcagaag atgttgtgaa tgaagctgta aatgaactaa
      781 aggccaccag tccaaagagg catggtaaat atgctagaaa ctggcgattc aagaagaacg
      841 caaaagggtc ttatgtgatt tacaatgctg caccaactta ccgacttact cacttactgg
      901 aaaacagtca cttgttacga aatggtggcc gtagtaaagc acaacctcat atcaaacctg
      961 tcgaggagaa ggtcaaagaa aactttgaaa aacggattaa ggagcttggt cgatgaagct
     1021 atcagaattt gcagatatct tggaacaggc tggtttgcct gtaacctatc gagcatatca
     1081 agagggaaat gtccctgata tgccttacct tgtgtatttt gaatctaatc ctattgtcaa
     1141 ttctgccgac aataaaagaa accacgaaat taagtcagtg gttgttgagt tggcatttga
     1201 gagaaaggat gaggatttgg aggagcgttt ggaagagcta tggtctaacc atgagctctt
     1261 ttttgaagct caagaagaaa cttttattga gactgaaagg ctctatgtca agccttacac
     1321 agtctatctc tactagagga ggaatgacat ggaaaataaa gtgacctatg gtctgaaaaa
     1381 tgtacacgtt gcaccaatta ctaatattag tgctgagaca ggggtgctga catacggaga
     1441 gattttccgt ttccctggtg caatggaaat tactcttgaa ccaaaagggg aatcaggtgc
     1501 tattcaagca gatgatattg attatcactt catgaatgcc aacgaaggtt atgagggtaa
     1561 atggaaagta cctcacatca ttgatcaatt tgctaccaaa attcttggtg aaatcaaaga
     1621 cactgaaact ggtgtattga ctgaaaaagg cgatgccgag ccaacaccgt ttgccttgat
     1681 gtttgaattt tcaggggata agaataagac ccgacatgtg ctctattatt gctctgctag
     1741 tcgtccagca actggctcta agacaaagag cggtacaagt gtcaatgagc gagaattaac
     1801 tttcaatgct agcccacgtc cgctcgatac tgtagtgaaa cgctcggtca cttcagcaga
     1861 caagaaagaa gtctatgata attggttcaa gcaagtctat gagccagtcg cagttagcag
     1921 ataaggaggt cctacatgcg taaaatcatt ccgattggtg atcaggagta tgaattggcc
     1981 acaaatggct atactccgat tgcctacaag gaagagtttg gtaaggacta tttccaagac
     2041 ctattctcaa tgttgaacag tcaagcactc ttgtctgagc ttgataagtt ggaacctggt
     2101 caggaattgc aagcgagtga tattgatatg tcggtccttg ctgactttga tatgacgttc
     2161 ttcaatcgtc ttttctggac ctttgccaag tctgccaacc ctcgtatcaa gccttatgct
     2221 caattcttca tggaaatgga agaattccct gtccaagaaa tcggtcgaga cctgatggaa
     2281 atgttgaatg cgagtatgca gacaaaaaag aaacagactc gtcagaatct gcaagcgatg
     2341 aaatctttac agtagaatcc tatctctctt gttgcaagga gactggttta tccattgatg
     2401 acctgaagca tatttcaatc ggaatggctt tggactacca gacggattat gtgaatttac
     2461 gcagtaaaga taagggtggc gaaagaaaag ctactcaaga agattttgac aacttttaag
     2521 aaattagcag tgctgagaga gtgatcctag ggtcaagttc cttgtagtaa gtggattttc
     2581 ggtcatagat gagcttgtaa gctctgctat ttttcgtttg aggtgggagg gtaggcaatt
     2641 ttcaaaggaa aggaggaaac aaatggcaag taacatcaaa ggaattaaga ttgaaattga
     2701 tggggacacg caacccttgc agaaggctct gaaagatgtc aacaagaacg ccactgaagc
     2761 tactaaggag ctgagacaga ttgacaaggc tttgaagttt gatacaggca atgtaacctt
     2821 gctgacccag aaacaggaag tcttacaaca gcaggtatca aataccaagg agaaacttga
     2881 aactctgaga caagcccaag cacaggtgga gaagcaattc cagaatggag acatcggagc
     2941 tgatcagtac cgtgctttcc aacgtgaact ggaaactact caaaatgtcc tcaagggtta
     3001 tgagaataag cttgaaaatg tcaatagagc tctggccaat aatggtcaag ctgtagagac
     3061 caatgtcagc caactgaaca acctacagag tgagcagagc cagttagcat ccgaaatgga
     3121 caaagtgacc agtgctttta aactacaaga gagtgagctc ggtcagaacg cttcagagtc
     3181 tgagaaagtc gcccttgctc agaagaagat tgctgctcaa tccgagattg tcgaaaaaca
     3241 aatctcgaac cttgagaaac aactgtcctt gacaaaaaaa gagtatggtg aaaactcaac
     3301 tgaagctaac aagatggaag ctgagttgaa ccaggctaag acagctctca acaatctcaa
     3361 taatgagatg aacgaaacca agtcggctgc aaatggtgct caggacggac ttgagggaat
     3421 gacaaaaatt gcaagagcgg aagccttgca aaatgtcagc gaaaaactaa gcgctgtttc
     3481 agataagttg cttgaagttg gcacagatgc catggaggca gctgcacagg ttcaggcaag
     3541 caatgctcaa tttcgtaccg tatttggcga tatggaaagt caggcaagac agtctcttaa
     3601 cgctatcggc gatgagatgg acatcgttcc tgaacgactg caaggctcat ttactcaaat
     3661 ggcatccttt gctaagacat caggaatgga aactgctgac gctcttgatt tgactactcg
     3721 agcaacaaga gcagctgctg acggtgccgc tttctacgat aagtccattg aggaagtgac
     3781 ggaaaactta cagtccttcc tgaaagggaa ttatgaaaat gatgcagctt tgggtatatc
     3841 agcaactgag acaactcgaa acgctgctgc aaacaaactt tatgggaaat catttaatga
     3901 gctgagtgaa gcccagaaac agttgacttt gcttcaaatg gtggaagacg ggaatgcact
     3961 ttcgggagct cttggtcagg ctgcaaggga atcagatggc cttgagaacg ttttggggaa
     4021 cttgaaacaa tcagggacga atgcccttgc tgcaattggt cagccaatcc ttgaaatgct
     4081 cattccagta tttcagtcat tagcagatat tgtcaataat gtagcaactt ggttcaccaa
     4141 tttatccccg acaattaaga atattgttgt aattattgga atgcttgtcg tggccgtagg
     4201 tactctactg ccaattattt tagccgtagt ttctggattc cagctactta tgggaggttt
     4261 agcaggacta tccgtaggta tcatgccact gatagggatt attgccggtg taatagctgg
     4321 catagttctc ttagtagtag caatcaagga actatggcaa aacaacgaag gtttcagaac
     4381 ggctgttaca gagatatgga atgccattat gtctgtcatc aatacgattg tgcagcaaat
     4441 atctgatttt gtgatgtcta tttgggagac cttgtctacc tggtgggctg aaaatcagga
     4501 attgattcgg gcaaccgctg agacgatttg gaatgccatt caatccgtca ttcagactgt
     4561 catgagcata cttggtccgc ttattgaagc tagttggaac aacattcagc tggtcatttc
     4621 aacagtttgg gaagttatca agactgttgt tgaaacagcc ataaacgttg tcctgggcat
     4681 tatcacagca gtcatgcaga tcatcaatgg aaactggtct ggtgcttggg aaacgataaa
     4741 gggagtattc tcaactgtct ggaatggtat tcagagcatt gttcagacgc ttctatccgc
     4801 tattcaatca tatattggaa atgtgatgag tggtatatct ggtacgattt caaacatttg
     4861 gaatgcgatc tcaggaaccg tcagcaacat cctcaacggg atatcaaaca cggtttcaaa
     4921 catctggaat ggtatcaaga atagtatttc caatgccatc aacggtgcaa aagatgtggt
     4981 ctcaaatgct atcaatgcta tcaaaggatt ctttaacttt gagtttaagt ggcctcatat
     5041 cccattacca cattttagta tatcaggctc cattaaccca ctagattggt taaaaggtgg
     5101 attacctaaa attggtgttg aatggtatgc gaagggaggc atcttgacca agccgacagc
     5161 atttggtatg aacggtaaca atcttatggt tggcggtgag gcaggcaatg aagctatctt
     5221 accgcttaat gataagacgc tcggagccat tggccgtggt atcgctcaga caatgggagg
     5281 tagtacacca actatcaata tcacgatcac tggcaatgtt gtccgtgagg aagctgatat
     5341 caccaagatt gctaatcaag ttgctcagcg tatcgcagat gagctacaac gtaaaacaca
     5401 attgagagga gggtaaacat gattagacat aatgaattag tgattgacgg tgtaaagaca
     5461 tcgtcttttc ctttcaaagt gattgtgcat gagtcccctt ccgtcacgtt gggagatagc
     5521 aagaccaatc tgctggaaca tgacggcatc agtggagcga ttgtgcagac taacaagcac
     5581 cgggggttga ttgaaaaatc ctacacaatc tatcttgtca agccaacaga ggagcaattg
     5641 aacaagttca tgagcttatt catccgtgaa aagttttggc ttgagaatga gcgtgtgaag
     5701 actacacggc tctggtgcta caaggcaagc gctacagatg cggaacaaga gaaacctggt
     5761 ctttatgtga ccaaggtaac ctttacttgc caccctacta agtttttcaa aggcacagac
     5821 agccagacct tgactgggaa tggggtttta aaggtacaag ggtcagctct tgcttttccg
     5881 aagattacag tagttggtca gagcgcttct gagacatcgt ttacgatagg taaccaagta
     5941 attaaacttg aaaagctctc agaatcgctt gtgatggtca atgatcctga caatcctagc
     6001 tttaagacag ctagcggcaa gctcattaag tgggctggag attttatcac ggttgatact
     6061 gctaaagggc agaatgtcgg tgtggtattg ggaccaggga ttcagtcatt gaaatttgaa
     6121 acagtttggg ggtgggcata gttgctttat ttacttgata aggatgtcaa gacagtcaaa
     6181 tggaatggca ttccgctaca cgaagctagc tctgctattg tcaaagaaga agtcaacggc
     6241 gattttgtat tgactgtccg ctatcctatc actgattcaa gtatctatca gcttatcaaa
     6301 gaggatatgc tgataaaggc acctgcacct gtgctgggtg ctcagctctt ccgcatcaag
     6361 aaacctgttg agaacgatga tagtctggac atcaccgcct accatatcac tgacgatgtc
     6421 atgcaacggt ctatcaatcc tgttagtgtt gttggtcaag gttgtgctat ggctctctct
     6481 caaatggtcc aaaatgctaa gacggacctt gggacttttt cgtttacaag cgacatcatg
     6541 gatagtcgga cctttaacac gacagatgca gagactcttt actcagtcct attggacggt
     6601 aaacacagta ttgttggaac gtgggagggt gagcttgtcc gtgataactt tactctgact
     6661 atcaagcgta gccgtggggc tgaccgaggg gttgtcatca cgacacacaa gaacctcaag
     6721 tcctatcagc gtaccaaaaa ctcccaaagc gtggtcacta ggatacacgc taagtcaact
     6781 tttaaggctg aaggtgctga ggaagaaaca accatcaacg taacagttga tagtccactt
     6841 atcggaaatt atccatacat caacgaaaaa gattatgaga ataataacgc taagacagtg
     6901 gatgagctga gaaagtgggc agaagctaag tttaagcacg agggtatcga caaggtatca
     6961 gatgctattg agattgaagc ctatgagctt gacgggcaag ttatccatct aggtgataca
     7021 gttaacatca agagcaggaa acacaacgtt gatatttaca aaaaggctat tgcttacgag
     7081 ttcaacgctt taacggaaga atacatctcc atcacgtttg atgataagcc tggggtagga
     7141 ggtactggtg tatctagtgg cgtgtctaat gctgccgatg tgatcttgaa tgccaatcga
     7201 aacgctcaag atgtcgctat cgagcgagct atccgaaatg ctaaccaagc ctttgacgcc
     7261 gaatttgaca agcgtgttga atccatcaac gacggcatcg aacaagctca agctgaagct
     7321 gaacgtcacg ctgacgctat taagcaagct attgatactg aaatcactca agtcaaccaa
     7381 tccatgcaag cacaatcaca ggaacacgac agacaggtcg cagatatatt gtccaaaact
     7441 cagtctgtcg agtcgcttgc caaccaagcc aagtcggatg ctgctagtgc attggctaga
     7501 gccaaccagg tcaagaccga agctatcgca gatgcgaggg ctcaggttgc gacggttagt
     7561 caggcgctaa acactgccaa gtccgaactg cagac
//
LOCUS       DASFRC010000105         7579 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.105, whole genome shotgun sequence.
ACCESSION   DASFRC010000105 DASFRC010000000
VERSION     DASFRC010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7579)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7579)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7579
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.105"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            76..633
                     /gene="frr"
                     /locus_tag="U1087_001552"
     CDS             76..633
                     /gene="frr"
                     /locus_tag="U1087_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006148672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HEM4756018.1"
                     /translation="MSKEIIAKAQERMNQSHQSLAREFSHIRAGRANASLLDRISVEY
                     YGSPTPLNQLAGITVPEARVLLITPFDKSILKDIERALNASDLGLTPQSDGTVIRLVI
                     PALTEETRKNLAKDVKKVGENSKVAIRNIRRDAMDEAKKAEKAKEITEDELKTLEKDI
                     QKVTDDAIKTIDKMTADKEKELLEV"
     gene            765..1619
                     /gene="cvfB"
                     /locus_tag="U1087_001553"
     CDS             765..1619
                     /gene="cvfB"
                     /locus_tag="U1087_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001095445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding virulence regulatory protein CvfB"
                     /protein_id="HEM4756019.1"
                     /translation="MNDLLAQYIVGLVTDENDQFYFVQKEGRTFALSKDEGEHSLGQS
                     VKGFAYTDMKQKLRLTTKEVGASRTSFGWGTVTEVRKDLGVFVDTGLPDKQVVVSLDI
                     LPEIKELWPKKGDQLYVKLDVDKKDRIWALPAFQEDFQKMAGPAYDNMQNQNLRAIVY
                     RLKMNGTFVYLPDNNMLGFIHPSERFAEPRLGQVLEARVIGYRAVDRTLNLSLKPRSF
                     EMLENDAQMILTYLESNGGFMTLNDKSAPEDIKATFGISKGQFKKALGGLMKAGKIKQ
                     DSLGTELV"
     gene            1629..2549
                     /locus_tag="U1087_001554"
     CDS             1629..2549
                     /locus_tag="U1087_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000964166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HEM4756020.1"
                     /translation="MLVYIAGSGAMGCRFGYQLSKTNHEVILLDNWEEHIETILENGL
                     KVTGDVEETIQLPIMKPTEATREADFIILLTKADQLPKMLRDIKPIIGPTTKVLSLLN
                     GLGHATTMRRYVPDESIMVGVTMWLAGLKGPGHAHLEGPGSISVQHILGDEQSVADII
                     EMLNEAGLNVTYDNHVVSAIWQKACVNGVMNPTCTILDCTIGELFGTEAGLNLVQGIF
                     KEFIAVAKSEADGIDEEAIWKYVIDASKKASNHYPSMHQDLVQHGRKTEIDYLNGAVV
                     FKGKRAGIPTPYCQMITDMVHAKESMLGLR"
     gene            2559..3014
                     /locus_tag="U1087_001555"
     CDS             2559..3014
                     /locus_tag="U1087_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HEM4756021.1"
                     /translation="MLIEEETIEEYMAALPENRKEAVERLHQVIVEQLPAGFEVGILG
                     GMINYYVPLTAYPDGYHCTPGEPLPFLALASQKAHIALYHMGIYMDQELNDWFVAAYQ
                     AQVPTKLDMGKSCVRMKNPKNIPYELIGDLVSKMSMERYIELYEKNHRK"
     gene            3020..3235
                     /locus_tag="U1087_001556"
     CDS             3020..3235
                     /locus_tag="U1087_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001232073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YozE family protein"
                     /protein_id="HEM4756022.1"
                     /translation="MRRSFYSWLMTQRNPKSNEPVAILADYAFDESDFPKQSDNFDEV
                     SRFLEESASFAFSMSDFDAIWEDYLGH"
     gene            3314..4336
                     /locus_tag="U1087_001557"
     CDS             3314..4336
                     /locus_tag="U1087_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HEM4756023.1"
                     /translation="MLEHSIDIQLKHPDDSFSLFGSNERHLRLMEQELGVVIHARTEK
                     VQVIGQEEPVEQARLVIQSLLVLVSRGLVINTPDVVTAISMAKNDEIEKFVALYEEEI
                     IKDNYGKPIRVKTLGQKLYVDSVKRHDIVFGIGPAGTGKTFLAVTLAVTALKRGQVKR
                     IVLTRPAVEAGESLGFLPGDLKEKVDPYLRPVYDALYQILGKEQTTRLMEREIIEIAP
                     LAYMRGRTLEDAFVILDEAQNTTIMQMKMFLTRLGFNSKMIVNGDISQIDLPRKVKSG
                     LIDATEKLSKIPQIDFVHFSAKDVVRHPVVAQIINAYEEEARAADSRASFETIGEPSR
                     KYNGEE"
     gene            complement(5006..6154)
                     /locus_tag="U1087_001558"
     CDS             complement(5006..6154)
                     /locus_tag="U1087_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin-independent methionine synthase II
                     family protein"
                     /protein_id="HEM4756024.1"
                     /translation="MTTSRFQLVGSLLRPANLGEFKRQIEAREDIKYPFYDDFDGYKE
                     TEASLIQKIVAEQKENGLDIVTDGEFGRSMWHLDFLWGFDGIERYIAEHGYPFKDHDG
                     QIFETRKDIGLRITAPLSAKNHHFIDIFKQVKELAGETVTKQTIFGPAHAFNELTIFN
                     GQVGPNQVYKTRDELKAGLIAAYKEFLDQYKEAGGQIVQFDDCLWELFDPANPVPFLP
                     QDDSEALAALADEFVAINNAVIDYGHEIGLTVWTHNCRGNYESRSAAGGTYEAIAEKF
                     LRDQKYDRFFLEWDDERAGDLKALESLRDKNVEVVLGLLSSKTSDLDDEERVYKLLEE
                     ASKIIPKERLYLSHQCGFASCDSGNELAIPQQWAKIKQGQEIADKFWS"
     gene            6353..7519
                     /locus_tag="U1087_001559"
     CDS             6353..7519
                     /locus_tag="U1087_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM4756025.1"
                     /translation="MKKQSPFIIAGIVMLGVVMRAPFTALPAILTDVAAGLGVEVSSL
                     GILTSIPLIMFALCSSLAPRLAAKFGMEKLMALVLLVMVLGSGMRVLNLPALYIGTML
                     VGATIAFINVLLPSLVAANFPKKIGLYTTIYITLMGVAATVASMIAVPIVSSSSWEFF
                     ILLITGLVFMAFLIWLPNVKNNHRFASENQGNQKSSIWKNKAAIAFLIFGGLQSVLYY
                     TEITWLPTISQSVGFSKAEAGLMAGFFNMTAIPMSMIIPAVLSRQTKEMRRNIMLAIS
                     SVTLLGLVMMVLIPTNLILWSALHIILSFSNAALFPYMMLSFTLKTSNSQATAQLSGM
                     VQTGGYLIAAFGPGLLGYSYPIFGNWLPLILALAIVTLAMMWTIVLIEREDIIL"
BASE COUNT         2207 a         1439 c         1714 g         2219 t
ORIGIN      
        1 gttatgcctg tggctcgttg cctagtacta aaagtaaact aaaagactgt aaaaaaatac
       61 aaagaaggaa gtcttatgtc taaagaaatt attgctaaag cgcaagagcg catgaaccaa
      121 tctcatcaga gtttggcacg tgaattcagc cacattcgtg ctggccgtgc caatgctagt
      181 ttgttggacc gtatttcagt tgagtactac ggttctccaa cgccattgaa ccagttggct
      241 ggtattacag tgccagaagc gcgtgttcta ttgattactc cgtttgataa gtcaatcttg
      301 aaggatattg agcgtgcttt gaacgcttca gatcttggtt tgacaccgca atctgacggt
      361 actgttatcc gtttggttat tcctgccctt acagaggaaa ctcgtaagaa cttggcgaag
      421 gatgtgaaaa aagtcggtga aaattcaaaa gttgccatcc gtaatatccg tcgtgatgcc
      481 atggatgaag ctaaaaaagc tgaaaaagca aaagaaatca cagaagacga gttgaagacg
      541 cttgaaaaag atattcaaaa agtaacagat gatgctatca agacaattga taaaatgact
      601 gccgacaaag aaaaagaatt gttggaagtt taatcaacac gtttttagac tacaaaaata
      661 gatcatcact gggctgtcta acttccagtg gtgaaccaat aagaaatcta atggggggag
      721 ttagacaaga cttcccccac tttttaatca gaaagaagaa aatcatgaat gatttattag
      781 cacaatatat cgttggttta gtgactgacg aaaacgatca gttttacttt gtccaaaaag
      841 aggggagaac ctttgctctt tctaaggatg aaggagaaca tagtctaggt caatctgtta
      901 agggatttgc ctataccgat atgaaacaaa aactccgttt gacaactaag gaagttgggg
      961 cgagtcgtac cagctttggt tggggaactg tcacagaggt acgtaaggat ttgggtgtct
     1021 ttgtggatac aggtctgcca gacaagcaag tggttgtttc cttggacatt ttgcctgaaa
     1081 tcaaggaact ctggccgaaa aaaggggatc agttgtacgt caaattagac gtcgataaga
     1141 aggatcgcat ttgggctctg ccagcttttc aagaagattt tcagaaaatg gctggacctg
     1201 cttatgacaa tatgcaaaac caaaatctgc gagcgattgt ctatcgtttg aaaatgaatg
     1261 gtacttttgt ttatttgcca gacaacaaca tgcttggttt tatccatccg agcgaacgct
     1321 ttgcggaacc acgtctgggt caggttttgg aggcgcgtgt catcggctac cgtgcagttg
     1381 atcggacctt gaacttgtct ctcaagccac gttcatttga gatgctggaa aatgatgccc
     1441 agatgatatt gacttatctg gaaagcaatg gaggtttcat gaccttgaac gataagtctg
     1501 ctccggaaga catcaaggcc acctttggta tttccaaagg gcaattcaaa aaagctcttg
     1561 gtggtttgat gaaggctgga aaaattaaac aggattcttt gggaacagaa ttggtctagg
     1621 gggcgtctat gctagtatat attgctggta gtggggcaat gggctgtcgt tttggttatc
     1681 aattgtctaa gacaaatcat gaagtgattt tgctggataa ttgggaagaa catatcgaaa
     1741 cgattctaga aaacggcttg aaagtgactg gagatgtaga ggaaacgata cagctaccca
     1801 tcatgaaacc gaccgaagca acgagagaag cagattttat cattctattg actaaggctg
     1861 atcagttgcc aaagatgttg cgggatatta aaccgattat cggtccaact accaaggttt
     1921 tgagtctctt gaatggtttg gggcatgcga cgaccatgcg tcggtacgtg ccagatgaaa
     1981 gtattatggt tggggtgacc atgtggttgg cgggactaaa gggtcctgga catgctcact
     2041 tagaaggtcc gggttctatc tccgttcagc atattcttgg tgatgagcaa tcagttgcgg
     2101 atattattga aatgctgaat gaagctggac taaatgtgac ctatgacaat catgttgtca
     2161 gtgccatttg gcagaaagcc tgtgtcaatg gtgtgatgaa tccaacttgt accattttag
     2221 actgtacaat tggtgaatta tttggtacgg aggctggact gaatctagta caggggattt
     2281 tcaaggaatt tatcgccgtt gccaagtctg aggcagatgg aattgacgaa gaagctattt
     2341 ggaaatatgt tattgatgcc tcgaagaagg cttccaatca ctatccatct atgcaccagg
     2401 atttggtcca acatggtcga aagacagaaa ttgattatct gaatggagcg gttgttttta
     2461 agggcaaacg tgcaggtatc cctacgccat actgtcagat gataacagat atggttcacg
     2521 ccaaagagag tatgctgggg ttgagatagg agaaagtcat gctgattgaa gaggaaacga
     2581 ttgaagaata tatggctgcc ttgcctgaaa atcggaagga agcagttgaa cgactccatc
     2641 aagtgattgt ggaacagtta ccagctggtt ttgaagtagg catcttggga ggtatgatta
     2701 actattatgt gccgcttact gcctaccctg atggttatca ttgcacaccg ggagagcccc
     2761 tgcctttcct tgccttggca tcacaaaagg cacacatcgc cctctaccac atgggaatct
     2821 atatggacca agaattgaat gattggttcg ttgctgctta tcaagcacag gtgcctacca
     2881 aactggatat gggcaagtcc tgtgttcgta tgaaaaatcc caagaatatt ccttatgaat
     2941 tgattgggga tttagttagt aagatgtcta tggagcgcta tatagagctc tacgaaaaaa
     3001 atcatagaaa gtagatgtag tgagaagaag tttttattct tggttgatga cccaacgcaa
     3061 cccgaaaagt aatgaaccag tagctatctt ggcagattat gcctttgatg aatctgattt
     3121 tcctaagcaa tcagataatt tcgatgaagt cagtcgtttt ttggaggaat cggccagctt
     3181 tgccttttcc atgtctgatt ttgatgcgat ttgggaagat tatttgggac attgatggat
     3241 aaaatagtac aaaatagcct tgtttgggct atttttgtta taatatagaa aagcacagga
     3301 aaaggagcaa ctcttgctag aacattcaat tgatattcaa ctcaagcatc cagatgattc
     3361 gtttagtcta ttcggttcga atgaacgcca tctgagattg atggaacagg aactaggtgt
     3421 ggttattcat gcccgtacgg aaaaagtgca ggtgattgga caggaagaac ctgtagaaca
     3481 ggcgcgtctt gttatccagt ctctccttgt cttggtgagt cgtggtttgg ttatcaatac
     3541 gccagatgtg gtcacagcta tttccatggc aaaaaatgat gagatagaga aattcgttgc
     3601 cctctatgaa gaagagatta tcaaggacaa ctatggcaaa cccattcgcg taaagactct
     3661 tggtcaaaaa ctctacgtgg acagcgtaaa gcgtcatgac atcgtgtttg gaatcggtcc
     3721 tgctggtaca ggtaagacct tcttggcggt tactctagct gtaacagccc tcaagcgggg
     3781 acaggtcaag cgcattgtcc tgacccgtcc tgcggtcgag gcaggcgaaa gtttaggctt
     3841 tttaccaggg gacttaaaag aaaaagtaga cccttatttg cgtcctgtct atgatgccct
     3901 ataccagatt ttgggaaagg agcagaccac gcgcctaatg gagcgcgaga ttatcgagat
     3961 tgcaccgctg gcctatatgc gggggcggac cttggaagat gcctttgtca tcttggatga
     4021 ggcgcaaaat acgaccatta tgcagatgaa gatgttcctg acccgtctgg gctttaattc
     4081 taagatgatt gtcaatgggg acattagtca gattgacctg ccacgcaagg ttaagtcagg
     4141 cctgattgat gcgacagaga aactaagcaa aattccgcag attgatttcg tacatttttc
     4201 agccaaggat gtggttcgtc acccagttgt tgcccagatt atcaatgcct atgaagagga
     4261 ggctcgggca gctgatagtc gagcaagttt tgaaacgatt ggggagccta gtcggaaata
     4321 caatggtgaa gagtagttgt ttcattggct gatatataaa agaattgtta tgctagttac
     4381 atttgatata taataaaaag ccttactgga tgatactgta agtgatgaaa caaacaggag
     4441 cttagtccaa ataagcgact tacaccatat cgtaaaatca catcgtacag caaatatcaa
     4501 ctatttgtca caagttatac caagcctatt gcccgactcc cttaaagcat tgtcacaacg
     4561 ttgctttgtc aacggtatca tataaatcta ttaaaatatt gctagtactt caagttggat
     4621 tagagattaa atcttaacga cattttcgaa ccagccctca ttatagcgga tagagatcat
     4681 aaaacctata actttatgga ttgttaccaa taaaaaggct ggttctatct gattcggatt
     4741 cgagatggga aaagcagcat gaaaccgagt tttactccct ttcttttcgc atgttcggca
     4801 ccgataagta tgaaaccctc gtggccaatt gtgataaatc tgtagcctat ataaaaaagc
     4861 cttcttttgt gttgtccgaa cataaaatcc caagtattac atcggaaaaa tacttgggat
     4921 tagatatcat agattaactg atcagagtta acttagagac actgattgat gacagggctt
     4981 ttatgcacga ataacaagaa gtggcttaag accaaaactt gtctgcaatt tcttggcctt
     5041 gtttaatttt tgcccactgt tgcgggatgg ccaattcatt acctgaatca catgaagcga
     5101 atccacattg atgtgacaag tagagacgct cttttggaat aatcttgctt gcttcctcga
     5161 gtaatttgta aacacgttct tcatcatcca aatcagaagt tttacttgaa agtagaccaa
     5221 gaacgacttc gacattcttg tcacgcaagc tttccaaagc ttttaaatca cctgcacgtt
     5281 catcatccca ctcaaggaag aatcgatcgt atttttggtc acgcaggaat ttttcggcaa
     5341 tagcttcgta agttccgcca gctgcagagc ggctttcata gttaccacgg cagttgtgcg
     5401 tccagacggt caagccaatt tcatgcccgt aatcaataac agcattattg atagcaacaa
     5461 actcgtcagc caaagcagcc aatgcttcag aatcgtcttg tggcaagaaa ggtacagggt
     5521 tagcagggtc gaataattcc caaaggcagt catcaaattg aacgatttgt ccaccagctt
     5581 ccttgtactg gtctaaaaat tccttatagg cagcgatgag cccggctttt aattcatcac
     5641 gagtcttgta gacctgattt ggtccgactt gtccattgaa aattgtcaat tcattaaagg
     5701 catgggctgg accgaaaata gtttgtttgg ttacagtttc tcctgctaat tctttcactt
     5761 gtttgaaaat atcaatgaaa tggtgatttt ttgcagaaag tggagcagta atacgcaatc
     5821 caatatcctt acgtgtttca aaaatctgtc catcatggtc tttaaatgga taaccatgtt
     5881 cagcaatgta acgctcgata ccatcgaagc cccagagaaa atctaggtgc cacattgaac
     5941 gaccaaattc tccatctgtc acaatatcca aaccgttttc tttttgttct gcaacaattt
     6001 tttggatgag tgaagcttca gtttctttgt aaccatcgaa gtcatcatag aatgggtatt
     6061 tgatgtcctc acgagcttcg atttgtcgtt taaattctcc taagtttgct ggtcgaagaa
     6121 gtgaaccgac taattggaat cttgaagttg tcatatgtgt gtctctcttt cgttttagtg
     6181 atgaacctat tctaactcat aagctatcat ttgaaaaata gttattttca tggcaaatcc
     6241 atagttaaaa actataacta gaaaaaatag acggaaataa ctttctatca tttgtcaact
     6301 atggtataat cgaaagtgct gaaatccgaa cattaggaga cttaggagaa aaatgaaaaa
     6361 acaatcaccc tttataattg caggaatcgt catgctaggg gtcgtgatgc gtgccccctt
     6421 tacagcttta cctgctattt tgacagatgt ggcagcagga ctgggagtag aagtgagttc
     6481 attaggaatt ttaacctcta ttccgctcat catgtttgct ctctgttcat ccttagcacc
     6541 gcgtcttgcg gctaagtttg gcatggaaaa actaatggct ctagtcttac tggttatggt
     6601 gctgggttca ggaatgcgag ttctcaactt accagccctt tacattggta caatgcttgt
     6661 tggtgctaca atagcgttta ttaatgtttt gctaccaagt ttggttgcgg ctaattttcc
     6721 aaagaaaatt ggtctgtata cgacgattta tatcactctc atgggggtgg cggcaacagt
     6781 tgcatctatg attgctgttc caattgtctc ctctagttct tgggaatttt ttattctatt
     6841 aattacagga ttggtgttta tggctttcct aatctggttg cctaatgtaa aaaataacca
     6901 tcgatttgca agtgagaacc aaggaaacca gaaatcatct atctggaaaa ataaagcagc
     6961 gattgccttt ttgatatttg gtgggttaca atcagtcctc tactatacag agattacctg
     7021 gttgccaact atttctcaat cagttggttt tagtaaggca gaagcagggc taatggctgg
     7081 cttcttcaat atgacagcta ttcccatgtc tatgattatc ccagctgtcc tttcccgtca
     7141 gacaaaagaa atgcgtcgaa atatcatgct ggctatttca tctgttacct tgcttggttt
     7201 ggtcatgatg gtattgattc cgaccaatct cattctttgg tcagcgcttc acattatttt
     7261 aagtttttca aatgcagccc tcttccctta tatgatgttg agctttactt tgaaaacaag
     7321 caacagccag gcgactgccc agttatcagg aatggtgcag acaggtggct atctcattgc
     7381 agcatttgga ccaggccttc tcggttatag ctatccaatc ttcggaaact ggctgccatt
     7441 gattcttgct ctggctatcg tcacacttgc catgatgtgg actattgttc tcattgaaag
     7501 agaagatatt atcttataaa gtataatccc ttaagaaggc tggcattttt ctgtgaaaat
     7561 ggcagagctt ctaagggat
//
LOCUS       DASFRC010000106         7506 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.106, whole genome shotgun sequence.
ACCESSION   DASFRC010000106 DASFRC010000000
VERSION     DASFRC010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7506)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7506)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7506
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.106"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            134..3352
                     /locus_tag="U1087_001560"
     CDS             134..3352
                     /locus_tag="U1087_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002917476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SP_1767 family glycosyltransferase"
                     /protein_id="HEM4756026.1"
                     /translation="MKKIICLIGDKGYLLQLTTCLKSIFRFNRQCNIYIFNQDIPQEW
                     FLSIRDIATQFDSQIHDIRLFDSELAQNWPTHDHISHMSYARYFIPKYIPEDRVLYLD
                     SDTLVCQSLDSLCSLDLQGYPLAAVPDPSGIEFNAGVLVIDNKKWRKEQILEQLIQTT
                     QAEQAIKEANPDYLFNGDQTVLNKVFAHNWLELDKVENLQVGHDMVAFYSNWTNHFSQ
                     STAFPRIIHFTTRHKPWSTFSSHRYRDLWWTFAMTDWSDLASIQLEDFQQLQTGFNAF
                     TFTNSESLEQIETLVQACPDITFHIAAYTNMGLPLLKLNVYHNVRLYQSIVGPTLDKL
                     IEHCQIYLDINHGDKPLHIIQSIKDRNIPILAFESTTSPDSQARVFSSEQVENMVAFL
                     QEVEASQKESSVKKTIVLAANYAYNTQVLTTIKSICYHNRNVTFYLINSDFPSEWFTG
                     LNKKLAPLDSRIINGRVNSQLLEGYQTNISYTVFLRYFIPQLVAEERVLYLDCDLVVS
                     QDLTPLFTMDMQGYPLAAVKDLGGQVYFNEHVFNSGVLLIDNKQWKEENMTRHLIEMT
                     NEWHDKVIQDDQSILNMVFKDRWLALENNYNFVTIHQMFSDYPLDHPTYPAVIHYLTE
                     RKPWSIYTQSLFRDLWWFYHDLEWTDIQKQEPLPRMEKLQVEKPKPTAFIYTYSEGLE
                     GIEFLLENLPQWTFIIASPVMVSDRLASLLRYDNLVLASNLIGLTCVVEDLVGQSTVL
                     LDINYDGEVEHIIERFHTLNKPVYSLPQTQHGQQGQIAFSQVQELALALERLANKVDG
                     SGNTDSPTVIGISETIDYLLKHQSSLARFGDGEMDIIAGNSIPYQDYDANLAKELKEI
                     MSQSSSETFVVCLSDVFEKQERYTESAQNFWKHHLEHYKDYYQEICQADWYGSTFISR
                     PYMDLVDKEPSAGYFAQLKQIWQDKDILIVEGKHSRSGIGNDLFDNAKSIQRIICPAK
                     NAYQNFQQIKEATLQYGKDRLILAMLGPTAKVLAYQVAKENLQIIDIGHIDSEYEWFK
                     VKATHKIKFNHKHTAEHNFDQDIVLQEDSTYASQIILDLSES"
     gene            3358..5466
                     /locus_tag="U1087_001561"
     CDS             3358..5466
                     /locus_tag="U1087_001561"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012745.1,HMM:NF013652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEM4756027.1"
                     /translation="MHNSNPIHIAFSVAGKYADYLGTTIYSILKHNSDNTIHFYILYQ
                     EIETEYRQNLEKLLLHFPNATIRFLKIENNYLNQIKPAKDGLHVSTYYRFLLTELLPE
                     LDKVLYLDVDVLVRGNIKPLWDTDISSVSLGVSREIDIYAGAPDHVTSIGLEDHHNYF
                     NAGVILFNLNKLRVEQLDKVLLETAVAKSPDLRFGDQDILNMIFKDDTTLFSYIYNFT
                     NWRLMWPEISDQPGIILHFSGSGKTKPWNNKHQTFDYLGPYIDEYRKYRLEYYHLIAS
                     NKSKVAVVVELHDREEHLKECIDSIIRQSYTNLDILLLDDQANEHCRKIAQEYCTIDQ
                     RISFTAPHSVTRAERYQTIAEKTAANYILFVRESDILEEDCIKYLVEKAEYGNTDLVL
                     SNYFVFDSNDGVFYFHEPIKNGDALQKQDLESLSNKQQNYLEHLWGKLFTTEYFLENI
                     PSYRGNLLLSDFYAAPSLTYLPRADYIYREDKTEKISVIVTAYNVAPYIEECVTSILN
                     QTYQNIEIILVNDGSTDETAKICDKLASQDNRIKVIHKENGGASDAKNVGVKHANGEY
                     ITLVDGDDVIDKELVATLYHHVKQEQADIAMGHYYIYDENDGKFYYFHIDDQTNFEVI
                     TPTQAVIRQTNWGKYNNANYIITVCKLIKKTCFQGVKFPFGRKFDDDATTHKLFIKAN
                     KIVQINIYIYIYIGDEKIVS"
     gene            5463..5699
                     /locus_tag="U1087_001562"
     CDS             5463..5699
                     /locus_tag="U1087_001562"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase family 2"
                     /protein_id="HEM4756028.1"
                     /translation="MTSGFQLSWVDDFIPIYEEKIADCLLAQIPLKDIRLRYINILRD
                     YKQYLEYQQLTDTKQYELILQKLQFAKLEQTDSE"
     gene            5978..6976
                     /locus_tag="U1087_001563"
     CDS             5978..6976
                     /locus_tag="U1087_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEM4756029.1"
                     /translation="MKVHITNLYGQSPLSVALMAQHMVTDIAKKLDIKEIGIYSFNAD
                     GESVENLAIRFDGMNAAVGNGDVIIFQAPSWNGTHFDHEYLKRLRIYSGIKIVIFIHD
                     IPPLMFSTNFYLMEKTIEMYNMADLIIAPSQKMLDLLYQHGLRVTNTLLQNMWDHKTD
                     IWLEKPAFHRVVNFTGNPQRFHFVDDWQFATPLNLFAPEYYPTKPNNVSYKGWKYSLT
                     LLEELNKNGGFGLVWSQGEDAEYYNLNVSYKLSTYIAAGLPVIAPRSLSNAHYISEYK
                     LGFLVDSLEEANAIVSTITEEEYRSLLDSLWNFRELITKGYFAQKLLTDAVHQVMI"
     gene            6990..>7506
                     /locus_tag="U1087_001564"
     CDS             6990..>7506
                     /locus_tag="U1087_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM4756030.1"
                     /translation="MDDLISVIVPVYNVEKYLSQCLESIINQTYKNIEILLINDASTD
                     NSKQICQHYAQLDSRIKLFNKPENRGVSDSRNWGIENCVGEYIIFIDSDDYIEYNFIE
                     KLYEVSISEYADIVVGEYYRYIENQGNFLIHVHNIIKEELSKHDCIDKIFLAHTDIFN
                     FPVAKLIKKNLF"
BASE COUNT         2439 a         1646 c         1281 g         2140 t
ORIGIN      
        1 cgtgtcaaga ctccgtcctt tcttcctttt ctcgtaattg tgtgatataa ttttcaatat
       61 atgatatgac atctgcttat acctgattaa ctagcacaac gggtaactac tacatttttc
      121 aaaaggatat ttcatgaaaa aaatcatttg cttaatcgga gataaaggct acctgctgca
      181 attgactact tgcctcaaat ctatttttcg ctttaaccgc caatgtaaca tttatatctt
      241 taaccaagat atccctcagg agtggtttct ctctatcaga gacattgcta cacaatttga
      301 cagtcaaatc catgacattc gtctctttga tagcgagtta gctcaaaatt ggccgaccca
      361 cgaccatatc agccatatga gctatgctcg ttactttata ccaaagtaca ttccagaaga
      421 tcgcgttctt tacctagaca gcgatacctt ggtctgtcaa tcccttgact ctctctgctc
      481 cctagacctt caaggctacc cacttgctgc tgttccagat ccttcaggaa ttgagtttaa
      541 cgctggtgtc ctcgtcattg ataataagaa atggcgtaag gaacaaattc tcgagcaact
      601 cattcaaaca acccaagctg aacaagccat aaaagaagca aatccagatt accttttcaa
      661 cggagaccaa actgtcctca acaaagtatt tgcccataac tggctcgaat tagacaaggt
      721 agaaaatcta caagttggtc acgatatggt cgccttttac agcaactgga ccaaccattt
      781 ctcacagtca acagcatttc cacgtatcat ccacttcact actcgacaca agccttggag
      841 taccttcagt tcacaccgtt accgagatct ctggtggaca ttcgctatga cggactggtc
      901 tgatttagcc agtattcagc tagaagattt ccagcagctc cagacaggtt ttaatgcctt
      961 tacctttacc aattcagaat cactcgaaca gattgaaacc cttgttcagg cttgtccaga
     1021 tatcaccttc cacatcgcag cctatacaaa catgggttta ccactgctca agctcaatgt
     1081 ctaccataat gtgcgactct atcagtccat tgtcggtcca accttggata agctcatcga
     1141 acattgccag atttatctag atatcaatca tggcgacaag ccacttcata tcatccaatc
     1201 catcaaagac agaaatatcc ctattcttgc ctttgaatca accactagcc ctgatagtca
     1261 ggcaagagtc ttttcatcag aacaagttga aaatatggta gcattcttac aagaggtaga
     1321 agccagccaa aaagaaagct ccgtcaagaa aaccatcgtg ctagcagcta attatgcata
     1381 caatacacaa gttttaacca ctattaaatc catctgctac cataatagaa acgtaacctt
     1441 ctacctcatc aatagcgatt tcccatcaga atggtttaca ggcttgaata aaaaattggc
     1501 tccactggat tcacgcatta tcaatggcag ggtcaatagc cagttgctag aaggttatca
     1561 aacaaatatt agttatactg tctttctacg atactttatc ccccaattgg tagctgaaga
     1621 acgagtcctc tatcttgatt gtgacctagt ggtttctcaa gacttaacac cgctatttac
     1681 aatggatatg caaggctatc ctctggctgc tgtcaaagat ttaggaggcc aagtctattt
     1741 caatgagcat gtctttaact cgggtgttct tctcatagac aataaacaat ggaaagagga
     1801 gaacatgacc agacatttga ttgaaatgac aaatgaatgg catgacaagg tcatacaaga
     1861 cgatcaaagt attctaaaca tggtcttcaa agatcgctgg ttagcacttg aaaacaacta
     1921 taatttcgta accatacacc aaatgttttc agactatcca cttgatcatc caacctatcc
     1981 agccgttatc cactatttga ccgaaagaaa accttggagt atctatacgc aatccttgtt
     2041 tagagatttg tggtggtttt atcatgactt ggagtggacc gacatccaaa aacaggagcc
     2101 tctcccacgt atggaaaaac ttcaggtaga gaaacctaaa cccactgcct ttatctacac
     2161 ctacagcgaa gggctagaag gaattgaatt tctcttggag aatcttcctc aatggacctt
     2221 tatcatcgca tcacctgtca tggtttccga ccgactagct agtctattac gttatgataa
     2281 tctcgtcctt gcatccaatc tcatcggcct gacctgtgtc gttgaagatt tggttggtca
     2341 atcaactgtc ttactagaca tcaattacga cggcgaagtt gaacatatta tcgaacgatt
     2401 ccataccctc aataaaccag tctactccct accacaaacc cagcatgggc aacaaggtca
     2461 gattgctttc agccaagtgc aggaacttgc tctagcctta gaaagactgg ccaataaagt
     2521 agacggatca gggaacaccg attccccaac agtcatcgga atttccgaaa ccattgacta
     2581 cctcttaaaa caccaatcct cccttgctcg atttggtgat ggagaaatgg acatcattgc
     2641 cggtaatagc atcccttatc aagactacga tgcaaacttg gccaaagagc ttaaagaaat
     2701 catgtctcaa tccagctcag aaactttcgt cgtttgtcta tcagatgtct ttgaaaaaca
     2761 agaacgttat actgaatctg ctcaaaactt ctggaaacat cacttagaac actacaagga
     2821 ctactaccaa gaaatctgtc aagcagactg gtacggctct accttcatct ctcgccctta
     2881 tatggacttg gttgacaagg agccctcagc tggatatttt gcacagctaa aacaaatttg
     2941 gcaagataaa gatattttaa ttgtcgaagg caaacactct cgttctggta ttggaaatga
     3001 tttattcgat aatgctaaat ccattcaacg cattatctgc ccagcaaaaa atgcctacca
     3061 aaacttccag cagattaaag aagcgactct ccaatatgga aaagaccgat tgattctagc
     3121 aatgctaggt ccaactgcaa aagtgctggc ctatcaagtt gctaaagaaa atttgcaaat
     3181 cattgacatc ggccatattg attccgaata cgaatggttc aaggttaaag caacacataa
     3241 gataaaattt aaccataaac atactgcaga acataatttt gaccaagata ttgttctcca
     3301 agaagacagc acctatgctt cacaaattat tctagattta tcagaaagtt aagaaatatg
     3361 cacaattcca atcctatcca catcgccttt tctgtggcag gaaagtatgc ggattattta
     3421 ggtactacca tttactctat cttaaagcat aatagcgata acactattca tttctacatc
     3481 ttatatcaag aaatcgagac agagtacaga cagaatcttg aaaaactgct tttgcacttc
     3541 ccaaatgcaa cgattcgttt cttaaaaatc gaaaataatt acctcaatca aattaaacct
     3601 gcaaaagatg gtctacacgt ctcgacttac tatcgttttt tactaacaga actcctacca
     3661 gaactagaca aagtacttta cttagacgtc gatgtactgg tacgtggaaa catcaaacca
     3721 ctttgggaca cagatatatc ttccgtttct ttaggtgtct ctcgagaaat tgatatctac
     3781 gcaggtgcac ccgatcatgt gacctctatc ggtcttgaag accatcacaa ctatttcaat
     3841 gctggcgtta tcttatttaa cctcaacaaa ctacgggttg agcagctgga taaggtactt
     3901 ctagagacag ccgtcgcaaa aagtcctgat ctgcgttttg gtgaccagga tattctcaat
     3961 atgattttta aagatgatac caccctattc agctatatct acaattttac caactggcgt
     4021 ctcatgtggc cagaaatcag cgaccaacct ggtatcatcc ttcacttttc tggctcaggt
     4081 aaaacaaaac catggaataa taagcaccaa acctttgact atcttggtcc ctatattgat
     4141 gaataccgca agtatcgctt ggaatactac catctgattg cttctaataa gtctaaagta
     4201 gctgtggtcg tagagcttca tgaccgtgag gaacacctaa aagaatgtat cgacagtatt
     4261 attcggcaat cctataccaa ccttgacatt ctattactcg atgatcaagc aaacgaacat
     4321 tgtcgtaaga ttgcacaaga atattgcacg atagatcagc gtatctcttt cacagctcca
     4381 cacagcgtta caagagcaga aagatatcaa acaattgctg aaaaaacagc agcaaactat
     4441 attctattcg tccgtgagag tgacatttta gaagaagact gcatcaaata tctagtagaa
     4501 aaagctgaat acggaaatac tgaccttgtt ttatcaaact actttgtttt tgacagcaat
     4561 gatggcgtat tttactttca cgaacctata aaaaacgggg atgcactaca gaagcaggac
     4621 ttagaaagtc ttagtaacaa gcaacaaaac tatctggaac atctttgggg aaaactcttc
     4681 actactgagt acttcttaga aaatattcca tcttatcgtg gaaacctatt actatcagac
     4741 ttctatgctg ctccttcact tacctacctt ccacgtgcag actacatcta ccgagaagat
     4801 aaaaccgaaa aaatcagcgt tattgtaaca gcctataatg ttgcgccata catagaagaa
     4861 tgtgtcacga gtatcttaaa tcaaacctat caaaatatag aaatcatcct tgttaacgac
     4921 ggatcgacag atgaaactgc caaaatctgc gataaactag caagccaaga caatcgtatc
     4981 aaggttatcc ataaagaaaa tggcggagct tccgatgcta aaaatgtcgg tgtcaaacat
     5041 gctaatggcg aatacattac tctagttgac ggtgacgatg ttattgacaa ggaactcgtg
     5101 gcaactctgt atcaccatgt taagcaagaa caagctgata tagccatggg gcattattat
     5161 atatatgatg aaaatgatgg gaaattttat tattttcata ttgatgatca aacaaacttt
     5221 gaagtcatca ctcccactca agctgtcatc cgtcagacca actggggaaa atataataat
     5281 gccaactata ttataaccgt ctgtaagctg ataaagaaaa cttgtttcca aggtgtcaaa
     5341 tttccttttg gtcgcaaatt tgacgatgat gcaacaaccc ataagctctt cattaaagca
     5401 aataaaattg ttcaaatcaa catatatata tatatatata taggagacga aaaaatagta
     5461 tcatgacatc tggttttcaa ctatcttggg ttgatgattt tattccaatc tatgaagaaa
     5521 aaattgcgga ttgcctcctt gctcaaatcc cattaaaaga tattcgatta cgctacatca
     5581 atattttaag agattacaag cagtacttgg aataccaaca gctcacagat accaaacagt
     5641 atgaacttat tttgcaaaag ttacaatttg caaagttaga acaaacagac tcagaataaa
     5701 aacctgtatt cacagttcag tgcttccatc taaggctagt ttttcagcta gtcatcgcta
     5761 gttttttcaa gatacaatca gtatttcctc aaaatcactg ccttgatgag caaaaaacta
     5821 tcttttaaat aaaagtactt tacttttgaa tacaggttct aagactgaac aaaatccagc
     5881 ttggttatag tcctgaactg ctacaaaaca tcgcaactgt tttacatgct gaatttaatc
     5941 cttttggtat ctaactctaa agaaagtagg aaatagtatg aaagttcaca ttaccaacct
     6001 ctacggccaa tcgcctctga gtgtcgcact catggctcaa catatggtta cagatattgc
     6061 caaaaagtta gacatcaagg aaatcggtat ttatagtttc aatgccgatg gcgaaagcgt
     6121 tgaaaatctg gctattcgat ttgatggcat gaatgctgct gtaggaaatg gcgatgttat
     6181 cattttccaa gcacctagct ggaatggtac ccactttgac catgaatacc tcaaacgtct
     6241 gagaatttat tctggcataa agattgtcat ctttattcat gacatcccac ctctcatgtt
     6301 tagtaccaac ttctatctga tggaaaagac catcgaaatg tataacatgg ctgatttgat
     6361 tatcgcaccg tctcaaaaga tgctggacct gctctaccag catggccttc gtgtcaccaa
     6421 tactcttttg caaaatatgt gggatcataa aacagatatc tggcttgaaa aacctgcctt
     6481 tcaccgtgtt gtcaacttca cgggaaatcc gcaacgtttc cattttgttg acgactggca
     6541 gtttgccaca ccgctcaatc tctttgcgcc agaatattac ccaaccaaac ccaacaacgt
     6601 ttcctataaa gggtggaaat acagtctcac tttgctagaa gaactgaata aaaacggggg
     6661 ctttggtctg gtctggtcac aaggagaaga tgcagaatac tacaatctca acgtttccta
     6721 caaattaagc acctacatcg cagcaggtct acctgtcatt gccccacgta gcctctccaa
     6781 tgcccactat atttccgaat acaagctggg gttccttgtc gatagtctgg aagaagccaa
     6841 tgccatcgtt tccactatca ctgaggaaga ataccgttcc ctccttgatt ctctttggaa
     6901 tttccgagaa ctgattacaa agggctactt tgctcaaaag ctactgactg atgcggttca
     6961 tcaggttatg atttaggagg agacacagta tggacgattt aatttcagtt atcgttcccg
     7021 tctacaatgt ggaaaaatat ttatcacaat gtttggaaag catcatcaat caaacttata
     7081 aaaatataga aatactctta ataaatgatg cttctaccga taacagtaaa caaatctgtc
     7141 agcactatgc ccagttagac agtcgaatta aactattcaa taaacctgaa aacagaggag
     7201 tgtctgattc tcgaaactgg ggaattgaaa actgtgtggg tgagtatatt atctttattg
     7261 atagcgacga ttacatcgaa tacaacttta tagaaaaatt atacgaagta tctatatctg
     7321 aatatgccga tattgtggtt ggggaatatt atcgctatat cgaaaatcaa ggaaactttc
     7381 tcatccatgt acacaatatc attaaagaag aattatccaa acatgattgt atagataaaa
     7441 tatttcttgc tcatacagat atttttaatt ttcctgttgc taagctcatt aagaaaaatc
     7501 tatttt
//
LOCUS       DASFRC010000107         7392 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.107, whole genome shotgun sequence.
ACCESSION   DASFRC010000107 DASFRC010000000
VERSION     DASFRC010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7392)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7392)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7392
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.107"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(85..2874)
                     /locus_tag="U1087_001565"
     CDS             complement(85..2874)
                     /locus_tag="U1087_001565"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HEM4756031.1"
                     /translation="MKLKETLNLGKTAFPMRAGLPTREPEWQKAWDEANLYARRQELN
                     EGKPAFHLHDGPPYANGNIHVGHALNKISKDIIVRSKSMSGFRAPFVPGWDTHGLPIE
                     QVLAKQGVKRKEMDLVEYLEMCRDYALSQVDKQRDDFKRLGVSADWENPYITLTKDYE
                     AAQIRVFGAMADKGYIYRGAKPVYWSWSSESALAEAEIEYHDIDSTSLYYANKVKDGK
                     GLLDTDSYIVVWTTTPFTVTASRGLTMGADIDYVLVQPAGSDRKYVLAEALVDSLAAK
                     FGWESFEVISKHKGAEFEYIVTEHPWDTEVDELVILGDHVTTDSGTGIVHTAPGFGED
                     DYNVGVKYDLEVAVTVNERGLMNEATGPDFEGQFYDKVVPTVKEKLGDLLLASEVINH
                     SYPFDWRTKKPIIWRAVPQWFASVSKFRQEILDQIEATTFIPAWGKTRLYNMIRDRGD
                     WVISRQRAWGVPLPIFYAEDGTAIMTKEVTDHVAALFEEHGSIIWWKSDAKDLLPAGF
                     THPGSPNGEFTKETDIMDVWFDSGSSWNGVMNARENLAYPADLYLEGSDQYRGWFNSS
                     LITSVAVNGHAPYKAVLSQGFVLDGKGMKMSKSLGNTILPSDVEKQFGAEILRLWVTS
                     VDTSNDVRVSMDILGQVSETYRKIRNTLRFLIANTSDFNPASDAVAYEELRSVDQYLL
                     VKFNKLVAQIREAYDNYDFMGIYKSVVNFVTLDLSAFYLDFAKDVVYIDGAKSLSRRQ
                     MQTVFYDILVKITKLLTPILPHTAEEIWSYLEHEAEEFVQLAEMPEVETYANEAQLLA
                     DWENFMNFRTQAQKALEEARNEKVIGKSLEAHLTAYVSAETKSFLESLNADIAQLLIV
                     SNLTVTTETAPESAVLVEEVAFTVERARGEVCDRCRRIDTSVVERSYGATICDHCASV
                     VEENFAEAVAQGFEA"
     gene            complement(2885..3328)
                     /locus_tag="U1087_001566"
     CDS             complement(2885..3328)
                     /locus_tag="U1087_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM4756032.1"
                     /translation="MIRLELVNKDNFEAVLQVQLAPEDQRRVASVEYSLAQAWLYKDS
                     GMILPYAVVSGRKVVGFAMLSIEPKDNSYYLWRLLIDKDFQNRGCGKEVVQQMIGKAK
                     ADPLCHKISINYVIGNHKMRYILEKFGFQPVGLDGQEMKMELIIK"
     gene            complement(3559..4248)
                     /locus_tag="U1087_001567"
     CDS             complement(3559..4248)
                     /locus_tag="U1087_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DivIVA domain-containing protein"
                     /protein_id="HEM4756033.1"
                     /translation="MALTALELKDKTFATKFRGYDADEVDDFLDIVTRDYEDLIRKNH
                     DQELELKNLRERLAYFDEMKESLSKSVLLAQDTAEKVKVAAEDQAANIIKQADYDAAT
                     LLHEAKDKANEILRNATDNAKKVVIETEELKNQTRIFHQRLKSTVESQLSLVNSSEWE
                     EILRPTASYIQTSDEAFRDVLHKALDEELPVEEESLDYTRQLTPEEIAELTRQAAAFE
                     SGESVVLSIEE"
     gene            complement(4257..5048)
                     /locus_tag="U1087_001568"
     CDS             complement(4257..5048)
                     /locus_tag="U1087_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HEM4756034.1"
                     /translation="MKNDKNLLQHFSREEREFVEKIMDMCQQVEDTYSYRLTHFLHPR
                     QDEIVCKIANYYQLQTFSSRYFVSTEHSRVIIAPAYYELDIKDFELTALHLSYARKFH
                     TLSHSQVLGTFLNRLGIKREYLGDILIDDERLIVFIDQKFGQIALQSITKVARVPVKG
                     KEEEWTTVRLPIGQEWRSKDVLVSSMRLDKLISVAFNLSRGTANKLIEAGHVKLDYVL
                     TEQTSKLVEIGQLISVRRYGRVRLNEFLGFSKQGKIKLKLDIVKT"
     gene            complement(5051..5314)
                     /locus_tag="U1087_001569"
     CDS             complement(5051..5314)
                     /locus_tag="U1087_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HEM4756035.1"
                     /translation="MQILIFLLLKIVEIYSYLLLAYALLSWFPSLYTSSIGRLIQWLV
                     APILKPFKRFNLQFMGLDWTVMAAMIALNMGTRFLVQLLLLLA"
     gene            complement(5319..5888)
                     /gene="sepF"
                     /locus_tag="U1087_001570"
     CDS             complement(5319..5888)
                     /gene="sepF"
                     /locus_tag="U1087_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein SepF"
                     /protein_id="HEM4756036.1"
                     /translation="MALKDTFKNLFNYFEVDEVNEVEEQADAYSMPNDRPKMRVANTT
                     AAPVREQQPKVETRREARSESQLQRLHERQQELMTNNNEKEIVKTTIDIKFPKRYEDA
                     PEMVNLLLDNASILIDFQYMSEQQARRCLDYLDGARSVLSGNLKKVSNTMWLLTPVNV
                     TVNIEELRNANAGTTTGAADSNFDFDIKR"
     gene            complement(5905..6576)
                     /locus_tag="U1087_001571"
     CDS             complement(5905..6576)
                     /locus_tag="U1087_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HEM4756037.1"
                     /translation="MNFQKNKDAIFSAVSKAAEKAGRPSESVKVIAVTKYVDSSIANQ
                     LVNTGITHIGENRVDQFLEKYNALADKQLTWHLIGTLQRRKVKDIIPFVDYFHALDSV
                     KLAQEIDKRATKIVKCFLQVNVSGEESKHGFAVSEIDAALAEISLLENIELVGLMTMA
                     PIDATDAELDEIFSKMQEIQEELATRNLPRMPFTELSMGMSGDFERAIAHGATYVRIG
                     SAFFE"
     gene            complement(6583..>7392)
                     /locus_tag="U1087_001572"
     CDS             complement(6583..>7392)
                     /locus_tag="U1087_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002263818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HEM4756038.1"
                     /translation="GNKRGNFAIEGIEGLREQVDTLLIISNNNLLEIVDKKTPLLEAL
                     SEADNVLRQGVQGITDLITNPGLINLDFADVKTVMENKGNALMGIGIGTGEDRVIEAA
                     RKAIYSPLLETTIDGAEDVIVNVTGGYDMTLTEAEDASEIVNQAAGQGVNIWLGTSID
                     ETMKDEIRVTVVATGVRQDTADKPARHRTEAVSPRPSQRFDHSVASAPTRGAAQQTEA
                     PKASAFGEWNLRRENLIRPTDTEPTSTVSVEKFTMDQDEEELDTPPFFRNR"
BASE COUNT         2118 a         1668 c         1350 g         2256 t
ORIGIN      
        1 cttgacaacg aataattttg attttcgaag agtattacaa aaagcctatc gctagataga
       61 ctttaacaaa tgtattgtga ttgcttaggc ttcaaaacct tgagctactg cttcagcaaa
      121 gttttcttcc actacgcttg cacagtggtc acagattgtc gcaccatagc tacgttctac
      181 aacacttgta tcaatacggc ggcaacggtc acatacttca ccacgtgcac gctctacagt
      241 gaaggcaact tcttctacca gaacagcact ttcaggagct gtttccgtgg ttactgtcaa
      301 gtttgaaacg atgagcaact gagcaatgtc tgcattcaag ctctccaaga aggacttggt
      361 ttcagctgag acataggcag tcaaatgagc ttcaagtgac ttaccaatca ctttttcatt
      421 acgcgcttct tccaaggctt tttgtgcctg agtacggaag ttcataaagt tttcccaatc
      481 agccaaaagc tgcgcttcat tggcataggt ttccacctct ggcatttccg ccaattgtac
      541 aaactcttct gcttcgtgtt ccaagtatga ccagatttcc tctgctgtat gtggcaagat
      601 tggggtcaag agcttggtaa ttttcaccaa gatgtcatag aaaactgtct gcatctgacg
      661 acgagaaagt gatttagcac catcaatgta gacgacatct ttggcaaaat cgaggtagaa
      721 ggctgacaaa tcaagggtta caaagtttac tacagatttg tagatgccca tgaaatcata
      781 attgtcgtag gcttcacgga tttgagctac caatttattg aatttcacca agagatactg
      841 gtcaacagaa cgaagctctt cgtatgccac cgcatcactt gcaggattga aatcagaagt
      901 gttagcaatc aagaagcgaa gggtattacg gattttacgg taggtttcag aaacctgtcc
      961 aagaatatcc atagacacac gtacgtcgtt tgaagtatcc acagaagtta cccacagacg
     1021 caagatttct gcaccaaatt gtttctcaac atcacttgga agaatggtat tgcctagaga
     1081 tttagacatc ttcatacctt tgccatctaa gacaaaacct tgtgacaaga cagctttata
     1141 tggcgcatga ccatttacag ctacagaggt aatcaaggat gagttaaacc aaccacggta
     1201 ttggtctgaa ccttctaggt agaggtctgc tgggtaggca aggttttcac gggcgttcat
     1261 gacaccattc caagatgaac cagagtcaaa ccatacgtcc atgatgtctg tttctttggt
     1321 aaattcgcca tttggtgaac ctggatgagt gaaaccagct ggcaagagat cttttgcatc
     1381 agatttccac cagatgatag aaccatgctc ttcaaagagt gctgctacat ggtctgtcac
     1441 ttccttggtc ataatcgcgg taccatcttc tgcatagaag attggaagcg gcacacccca
     1501 agcacgctga cgagagatga cccagtcacc acggtcacgg atcatgttgt aaagacgtgt
     1561 tttaccccaa gcaggaataa aggtcgttgc ttcgatttgg tccaagattt cctgacggaa
     1621 tttagaaaca gaggcaaacc actgtggcac tgcacgccag atgattggct tcttggttct
     1681 ccagtcaaat gggtaggagt gattgatcac ttcactagca aggagcaagt cgcctaattt
     1741 ttccttaacc gttggtacaa ccttgtcata gaattgccct tcaaaatcag gacccgtagc
     1801 ttcattcatc aagccacgtt cgttgacagt taccgcaacc tccaagtcat atttgacacc
     1861 gacattgtag tcatcctcac caaagcctgg agccgtatgg acgatacctg taccagagtc
     1921 cgttgtgaca tggtcaccca agataaccaa ttcatcaact tcagtatccc atgggtgttc
     1981 ggtcacgata tattcaaatt cagcaccctt gtgttttgaa atcacttcga aggattccca
     2041 accgaatttg gctgccaagc tatcaaccaa ggcttctgcc aagacatact tacggtcaga
     2101 gccagcaggt tgaaccaaga catagtcaat gtctgctccc attgtcaaac cgcgagaagc
     2161 cgttaccgta aatggagtgg ttgtccagac aacgatgtag ctgtctgtat ccaagagccc
     2221 cttgccatct ttgaccttgt tggcataata cagagatgtt gagtcaatgt cgtggtattc
     2281 gatttcagct tctgcaaggg cagattcaga tgaccatgac cagtagacag gcttagcacc
     2341 acggtagata tagcccttgt ctgccatagc accaaagaca cggatctgag ctgcttcgta
     2401 gtctttagtc aaggtgatat atggattttc ccagtctgca gaaacaccca agcgcttgaa
     2461 atcatcacgt tgcttgtcaa cttggctgag ggcataatca cgacacattt caaggtattc
     2521 aaccaagtcc atttccttgc gtttgacacc ttgttttgcc aagacttgct caataggaag
     2581 gccgtgcgta tcccaacctg gtacaaatgg agcacggaaa ccagacattg acttagagcg
     2641 aacgataata tctttagaaa tcttgttcaa agcatgccca acgtggatat ttccgttagc
     2701 gtatggaggg ccatcgtgga ggtggaaggc aggcttgcct tcattgagtt cttggcgacg
     2761 agcatacaag tttgcttcat cccaggcctt ttgccattct ggttcacgag ttggcaatcc
     2821 tgcacgcata ggaaatgctg tcttacctaa attgagtgtt tcttttagtt tcatcataac
     2881 tcctttattt tataattaat tccattttca tttcttgacc atctaaaccg acaggctgaa
     2941 agccaaattt ttctaagatg taccgcattt tatgattgcc aatgacataa tttatagaaa
     3001 ttttatgaca aagcggatcc gccttcgcct ttccaatcat ttgctggacg acttcctttc
     3061 cgcatccacg attttgaaaa tccttatcaa tcaacaagcg ccataaataa taactattat
     3121 ctttgggttc gatagataac attgcaaaac caacaacttt tctgccagat accacagcat
     3181 atggtagaat catccccgaa tctttatata accaagcttg ggctaatgaa tattcaactg
     3241 atgctactcg gcgttggtcc tcaggtgcaa gttgaacttg taacactgct tcaaagttat
     3301 ccttgtttac taattctaat cgtatcataa aaataaaaaa actcccgcca aataaggacg
     3361 aaagttcgtg gtaccacctt agtttagata gagtttcccc tatccctcta tgttcgtaac
     3421 gtgaacagac gtctctcctt actattttca ggaaaaatca aacaaagtga tgatccatag
     3481 aaagagattg tagggcttcc accatctcct actcgcttaa aatatttcta acgaccttgt
     3541 ctttgcttat gatttctatt attcttctat tgaaagtact acagattctc cactctcaaa
     3601 agctgctgcc tgacgagtta attccgcaat ctcttctggt gtcaattgac gtgtataatc
     3661 caaactttct tcttcaacag gtaattcttc atccaaagcc ttatgaagaa catcacgaaa
     3721 ggcttcgtca cttgtttgaa tgtaacttgc tgttgggcgg aggatttcct cccattcaga
     3781 tgaattaacc agtgataatt ggctttctac tgttgatttc agacgctgat ggaaaatacg
     3841 tgtctggttt tttaattctt cagtttcaat gacaactttt ttcgcgttgt cagtcgcatt
     3901 acgaagaatt tcatttgcct tatctttagc ttcatgtaac aatgttgccg catcatagtc
     3961 agcttgttta ataatatttg ccgcttgatc ttcagccgca acctttactt tctcagctgt
     4021 atcttgagct aaaagaactg atttactcaa tgattctttc atctcatcaa aataagccaa
     4081 acgttcccgc aaatttttca attctaactc ttggtcatga tttttacgaa ttaaatcctc
     4141 ataatcacgc gttacaatat ccaaaaagtc atcaacttca tctgcgtcgt atcctctaaa
     4201 ttttgtagca aaggttttat cttttaattc taatgctgta agtgccatct ttcctcctaa
     4261 gttttaacaa tgtctaactt taattttatc ttcccttgct tagaaaaacc taaaaattca
     4321 tttaggcgaa ctctaccata tctcctaaca ctaattaatt gccctatttc aactaattta
     4381 ctggtttgtt ctgtcagaac ataatccaac ttcacatgtc cagcctcaat caacttgttt
     4441 gcagttcccc ttgaaagatt aaatgcgacc gaaatcaatt tatccaatct catactagaa
     4501 accaacacat cctttgaacg ccattcctgt ccaatcggta gtcgaacagt cgtccattct
     4561 tcttcctttc ccttaacagg gacacgagca actttagtga tagattgtaa ggcaatctgc
     4621 ccaaatttct gatcgataaa gacaatcaat cgttcatcat caatcaaaat atcacccaaa
     4681 tactcccttt taatccctag tcgattgaga aaagttccaa gaacttgtga atgggataag
     4741 gtgtgaaatt ttctagcata ggacaaatga agagcggtta actcaaagtc cttgatgtcc
     4801 aactcataat aagccggggc aataataacc cgcgaatgtt cagtcgaaac aaagtaccga
     4861 ctagaaaacg tttgtaactg gtagtagtta gcaattttgc atacaatttc atcttgtcta
     4921 ggatgtaaaa agtgagttaa tctgtatgaa tacgtatctt caacttgctg acacatatcc
     4981 attattttct ctacaaactc tctttcttcc ctagaaaaat gttgcaataa gtttttgtca
     5041 tttttcataa ctatgctaac agtagcaata attgaaccaa aaagcgtgtt cccatattaa
     5101 gcgcaatcat ggctgccatt acggtccaat ccaaccccat aaattgtaga ttaaatcgct
     5161 taaagggttt taaaatcggt gctaccagcc attgaatcaa acgaccaatc gagcttgtgt
     5221 ataggctagg aaaccaactt agcaaagcgt atgccaataa gagataagaa taaatctcta
     5281 caatttttaa tagtaaaaaa atcaaaattt gcatagcgtt accgttttat atcaaaatca
     5341 aaatttgaat cagccgcacc agtagttgta ccagcattag cattgcgcaa ttcttcaata
     5401 ttgactgtga catttactgg agttaatagc cacatggtat ttgagacctt ttttaaattt
     5461 ccagataata ctgaacgagc accatccaag tagtctaggc aacgtcttgc ttgttgctcc
     5521 gacatatatt gaaaatcaat gagaatactc gcattatcta ataaaagatt taccatctct
     5581 ggtgcatctt cataacgttt tggaaactta atatcaattg tagttttgac aatctctttt
     5641 tcgttattat tagtcatcaa ttcttgctgc ctttcatgta ggcgttgaag ttgactttct
     5701 gaacgtgctt cccgacgcgt ctctactttt ggctgctgtt cgcgcacagg tgcagctgta
     5761 gtattggcaa cacgcatttt aggacgatca ttaggcattg aataggcatc tgcctgttct
     5821 tcaacttcat tgacttcgtc aacttcaaag taattaaata aattcttaaa tgtatctttt
     5881 aatgccatat tttcctcctc tccattattc aaagaatgct gagccaattc tcacatatgt
     5941 agctccgtga gcaatggcgc gttcaaagtc cccactcatt cccatactta actctgtaaa
     6001 gggcatacgt ggtaagttcc ttgtagctag ttcttcttgg atttcctgca ttttagaaaa
     6061 aatctcgtct aattcagcat ctgtagcatc aatcggtgcc atcgtcatca atccaacaag
     6121 ttcaatgttc tccaataaac taatttcagc aagtgccgca tcaatctcag atactgcaaa
     6181 gccatgctta ctctcctcac cggaaacgtt gacttggagg aaacacttga ctattttagt
     6241 cgcacgttta tctatttcct gagctagttt aacagagtct agggcgtgga aataatcaac
     6301 aaatggaata atgtccttga cctttcttct ctgtaaagtc cctatcaaat gccatgtcaa
     6361 ttgtttgtct gctagggcat tatacttttc taagaactga tcgactcgat tttctccaat
     6421 atgagtaatt ccagtattca ctagctgatt agcaatagag ctgtcaacat atttggtgac
     6481 agctattacc tttactgatt cacttggacg acctgccttc tcagcagctt ttgaaactgc
     6541 tgaaaagata gcatccttat tcttttgaaa attcatttta gtttagcgat tacggaagaa
     6601 tggtggtgta tccaattcct cctcatcttg atccattgta aatttttcga ctgaaacagt
     6661 ggatgttggt tctgtgtcag ttggacgaat caagttttcg cgacgcaaat tccactctcc
     6721 gaaggcagaa gctttcggcg cttcagtttg ttgtgcagct ccacgagttg gtgctgatgc
     6781 tactgaatga tcaaagcgtt gagaagggcg tggtgaaaca gcttccgtgc gatggcgggc
     6841 tggtttatca gcagtatctt gacgaacacc cgtagccaca acggtcacac gaatctcatc
     6901 tttcattgtt tcatcaatag atgtacccaa ccaaatgtta acaccttgac ccgcagcctg
     6961 attaacgatt tctgaagcat cttctgcttc tgtcagagtc atgtcatagc cacctgtaac
     7021 attgacaatg acatcctctg caccatcaat tgttgtttca agaagaggag aataaatcgc
     7081 tttacgagcc gcctcaatca ctcggtcctc accagtaccg ataccgatac ccatcaaggc
     7141 gtttcctttg ttttccataa ctgtcttcac atctgcaaag tccaagttaa tcaaaccagg
     7201 atttgtaatc aagtctgtaa ttccttgaac accttgacga agaacattat cagcttcgct
     7261 tagtgcttct aaaagcggtg ttttcttatc aacaatttca agaaggttgt tgtttgaaat
     7321 aattaaaagt gtatctactt gttcacgaag accttcaatt ccctcaatcg caaagtttcc
     7381 acgtttattt cc
//
LOCUS       DASFRC010000108         7340 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.108, whole genome shotgun sequence.
ACCESSION   DASFRC010000108 DASFRC010000000
VERSION     DASFRC010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7340)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7340)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7340
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.108"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            92..740
                     /locus_tag="U1087_001573"
                     /pseudo
     CDS             92..740
                     /locus_tag="U1087_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939615.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
     gene            complement(771..1406)
                     /gene="serB"
                     /locus_tag="U1087_001574"
     CDS             complement(771..1406)
                     /gene="serB"
                     /locus_tag="U1087_001574"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HEM4756039.1"
                     /translation="MTTGLLVMDVDSTLILEEGIDLLGEEAGLGAQVAVITERAMRGE
                     LDFEEALRERVALLKGLPVSVFDRIIKKIHFTPGAAELVSELKMRGYKVAVVSGGFHE
                     TVDRLAAQLELDYVRANRLEVVDGVLTGQVLGEIVTQDTKKACLEEWAAENGLSLSQT
                     IAMGDGANDLPMIQRAGIGVAFCAKPIVQEQAPYQINEKNLYKLIEILDSK"
     gene            complement(1458..3182)
                     /gene="ezrA"
                     /locus_tag="U1087_001575"
     CDS             complement(1458..3182)
                     /gene="ezrA"
                     /locus_tag="U1087_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation ring formation regulator EzrA"
                     /protein_id="HEM4756040.1"
                     /translation="MPTGTIILIVSIVIILIIAYVACLIVRKRNDNLLVALEERKEEL
                     FNLPVNEEVEAVKALHLIGQSQVSFREWNQKWIDLSLNSFADIENHLFEAEGYNNAFR
                     FVSAKNAIDSIDSQIDLIEEDIASIRHGLMELKEQEEKNSGRVKHALNLFDSLQEAVR
                     ENPDSYGETLPELEKQLKNIEVEFSEFVMLNSSGDPIEASEILDKAEEHMIALNQIMD
                     RIPSLIKRVTKDFPEQLEDLESGYRKLVEQNYLFTEANIESQFQNIRVSIRENTALIV
                     SFDLDAAEAENEGIQAKIDHLYKVFNREIEANKEAVKISKNLPKFLEHVVQNTQLLDE
                     ESQRLNATYLLADSKLSRINQLKARLESIEIVVTESVEDIENPQVAYSILKERLDHSL
                     ASLKEIEEEQLVLADYLKSQELSENTARKKSTLYINKLHTLKRYMEKRNLPGIPAEFL
                     TNFFRTSDHVEALIAELDYKRINIEVVNRLLENATYDMNQLEELAYLIVQNATLTEQL
                     LQYSNRYRSFDESVQKAFNRSLSIFEKDFDYQAAFEEISFALETVEPGVTERFVRSYE
                     KTREAIRY"
     gene            complement(3271..5223)
                     /gene="gyrB"
                     /locus_tag="U1087_001576"
     CDS             complement(3271..5223)
                     /gene="gyrB"
                     /locus_tag="U1087_001576"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015604652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HEM4756041.1"
                     /translation="MTEEIKDLQEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEG
                     LHHLVWEIVDNSIDEALAGFADKIEVYIEPDNSITVIDNGRGIPVDIQEKTGRPAVET
                     VFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVHVYKNGQVYFQEYKRGEVV
                     ADLEVVGETDRSGTTVHFTPDPEIFTETTEFDFAKLNKRIQELAFLNRGLNLSITDKR
                     EGVEQTKEYHYEGGIASYVEYLNENKDVIFETPIYTEGEMDDITVEVAMQYTTSYHEN
                     VVSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVI
                     SVKHPGPQFEGQTKTKLGNSEVVKITNRLFSDAFAEFLLENPQIARRIVEKGILASKA
                     RIAAKRAREVTRKKSGLEISNLPGKLADCSSNDATKTELFIVEGDSAGGSAKSGRDRE
                     FQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTD
                     ADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPPIYGIKVGSEIKEYIQPGVNQEQE
                     LQDALERHSTGRSKPTIQRYKGLGEMDDHQLWETTMNPENRLMARVSVDDAAEADKIF
                     DMLMGDKVEPRREFIEENAVYSTLDV"
     gene            complement(5405..5944)
                     /locus_tag="U1087_001577"
     CDS             complement(5405..5944)
                     /locus_tag="U1087_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HEM4756042.1"
                     /translation="MTRVAVVLADGFEEIEALAPVDVFRRAHFDCQIVGLDSHEVEGS
                     HGIRVQTDQVFDGDLSSFDLIVLPGGMPGSVHLRDSESLITELQRAVASGKSVAAICA
                     APIVLDKAGLLDSRHYTCFPGKEKDITSGIHLEEDVVVDGPIITSRGAGTSLDFAYKL
                     VDLFGGDGESLAQTMVYHS"
     gene            complement(5958..7187)
                     /locus_tag="U1087_001578"
     CDS             complement(5958..7187)
                     /locus_tag="U1087_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HEM4756043.1"
                     /translation="MRKLMKNRGTIDSRVDYSLILPVFFLLVVGIISLYIAVSQDYPD
                     NVVQMVGQQIAWIGIGTVAAFLVMFFSTKFLWQITPYLYVLGLGLMVLPLFFYSPDLV
                     ASTGAKNWVTIGGMTLFQPSEFMKIAYIIMLSRVIVTFHKYYPNRKIREDFMLIGYMT
                     LFTIPVLILLALQKDLGTSLVFVAIFSGMLLLSGVSWKILLPTALTGIVLVGGFMLIF
                     ISPGGTTFLHNLGMDTYKINRIAAWLDPFKNAQSTTYQQAQSLVAIGSGGLKGLGFNK
                     TNLLIPVRESDMIFTVIGEDFGFIGGTVLIGLYLLLIYRMLRVTLKSNNRYYTYISTG
                     YIMMLLFHVFENVGAATGLLPLTGIPLPFISQGGSSMVSNLIGIGLVLSMGYQSRLAD
                     EKETNRSRRYRKITIKR"
BASE COUNT         2216 a         1671 c         1247 g         2206 t
ORIGIN      
        1 actatattag tatagcacgc tcctattcag ctttcaataa atcttttctg tttttcatcg
       61 tctgtgttat actgaaagaa aggagataag tatgtatcaa actatattat ttgacttaga
      121 tggaactctt actgattctg gacaaggaat cttaaactcc gtcgcctacg cactagaaaa
      181 aatgggaatt gaagaaccag atacaaccaa tttaaaccga ttcatcggcc cccactctat
      241 gaatcttttt cacgattcta ccaactcagc cctgaagata cacaaagtgc agttgatact
      301 ttccgtgtct attttaaaga aaaaggaatg tttgaaaatc aactctatcc tggaatcatc
      361 cctctgcttg aagaattgaa aacggctgga aaaacactag taattgctac ctcaaagcca
      421 gaaatatttg ccaaacagat tctagaacat tttggtatcg ctcactactt tgttgtcatt
      481 gccggtgcta gtctggatag tagtcgcatc agtaaggcgg acgtcatcgg ctatgctata
      541 atcaattaga agcatttcca aaacatgctg tgatgattgg agatagggaa catgacattg
      601 aaggagcacg caggcaccaa cttcccgcca tcggtgttct ttacggctat gggaacaaac
      661 aggaatttga aaaggctggg gccaccatga tagtcgaaac catccaagat ttgaaaagga
      721 ttttactgac aacagaatag aagaaaagcc agcactcagc tgacttctca ttatttacta
      781 tctaaaatct ctattagttt atagagattt ttttcattta tttggtaggg cgcctgttct
      841 tggacaatcg gtttagcaca gaaagctact ccaattcctg ctcgttgaat cattggtaga
      901 tcatttgctc catcccccat ggcaatcgtt tgagatagac tcagcccatt ttctgccgcc
      961 cattcttcta aacatgcttt tttagtatct tgcgttacaa tttcccccaa cacttgtcca
     1021 gtcaatactc catctactac ttctaatcga ttagcccgaa catagtctaa ctctaactgt
     1081 gcagctagtc gatcgactgt ttcatgaaac ccgcctgaaa ctactgctac cttatagcct
     1141 cgcattttta attctgagac taattctgct gctccaggcg taaagtggat ttttttgata
     1201 attcgatcaa acacagaaac aggcagtccc tttaacaacg ccacacgttc acgtaaggct
     1261 tcctcaaaat ccaattcccc acgcatagca cgttcggtaa ttactgcaac ttgcgctcct
     1321 aaaccggcct cttctccaag taaatctatt ccttcttcca aaattaatgt tgaatcaaca
     1381 tccataacta ataatccagt tgtcatctcc gatattcctt tcaaagtata aaaataaaaa
     1441 gccaaatggc tttttatcta gtagcgaatg gcttcgcgag ttttttcgta tgaacgtaca
     1501 aaacgctctg ttacaccagg ttcaactgtt tccagagcaa atgaaatttc ttcaaatgct
     1561 gcttggtaat caaaatcctt ttcaaaaatt gataatgaac ggttgaatgc tttttgcaca
     1621 ctttcatcga atgaacgata acggttagag tattgtagca actgctctgt taaagtcgca
     1681 ttttgcacaa tcaaatacgc caactcttcc aattgattca tatcatacgt tgcattttcc
     1741 aacaaacggt taacaacttc gatattgatt cgtttatagt ctaactcggc aatcaaggct
     1801 tccacatgat cgctcgttct aaagaagttt gttaaaaatt cagctggaat tcctggaagg
     1861 ttgcgttttt ccatataacg cttaagggta tgcaatttgt tgatataaag tgtagatttc
     1921 ttacgcgctg tgttctctga caattcttgt gatttcagat agtcagctaa aacaagctgc
     1981 tcctcttcga tttctttcaa acttgccaat gaatgatcca aacgctcttt caaaatagaa
     2041 tatgcaactt gtggattttc aatgtcttcc acactttctg taacaacaat ttcaatcgat
     2101 tccaaacgag ctttaagctg attgatacgt gaaagtttgc tatctgccag caagtaagtt
     2161 gcgtttaggc gttggctttc ctcatccaag agctgtgtat tttggacaac atgctccaag
     2221 aattttggca agtttttact aatcttaaca gcttccttat ttgcttcgat ttcacgattg
     2281 aagactttat acaaatgatc aatttttgct tgaattccct cattttcagc ttctgcggca
     2341 tccaaatcaa aggaaacaat caaagcagta ttttcacgaa ttgaaacgcg aatattttgg
     2401 aactgtgact cgatgttagc ttctgtgaac aaataattct gctcaaccag tttacgataa
     2461 cccgactcca aatcttccaa ttgctctggg aaatcttttg taactcgttt aatcaaactt
     2521 ggaatgcgat ccatgatttg attgagagca atcatatgct cttcagcctt atcaaggatt
     2581 tcagaagctt caatcgggtc acctgaggaa ttgagcatca caaattcaga aaactcaact
     2641 tcaatatttt tcaattgttt ctcaagttct ggtaacgtct caccgtagct atctggattt
     2701 tcacgaacag cttcctgcaa actatcgaac aagtttaacg catgttttac gcgaccagag
     2761 tttttctctt cttgctcctt caactccatc aaaccatgac ggatagaggc gatgtcttct
     2821 tcaattaaat caatttggct gtcgatactg tcgatagcat tctttgcact cacaaagcga
     2881 aaggcattgt tataaccttc tgcctcaaag agatgatttt caatgtcggc aaatgaattg
     2941 agcgacaaat caatccattt ttgattccat tcacggaatg acacctgact ttgaccaatc
     3001 aaatgaagtg ctttgacagc ttcgacttct tcattaactg gaaggttaaa tagctcttcc
     3061 ttacgttctt ccaatgcaac caaaaggttg tcatttcgtt tacgaacaat caggcaagct
     3121 acataggcaa tgattaaaat aataacaatc gaaacgatta agatgattgt tcctgtaggc
     3181 atgtaaatct ccttagctca tagtaattac tagaaaatat cgcttaatta taccataaat
     3241 ctctagtata tgcacttgtt tttttagttt ttagacatcc aatgttgaat aaacagcatt
     3301 ttcctcgata aactctcgac gaggttcaac cttatccccc attagcatgt caaaaatctt
     3361 atcggcttct gccgcatcat caactgaaac gcgtgccatg agacgatttt caggattcat
     3421 cgtagtttcc cacaactgat gatcatccat ttctcccaaa cctttgtaac gttgaatcgt
     3481 tggcttggac cgtcccgtac tatgtctttc taaggcatct tgcaattctt gctcttgatt
     3541 aaccccaggt tgaatatatt cttttatctc acttccaacc ttgataccgt aaataggtgg
     3601 ttgagcgata tatacgtatc ccgcttctac aacaggacgc atgtagcggt aaaataatgt
     3661 cagaaggagt gtccgaatat gggcaccatc gacatcggca tctgtcataa tgactaattt
     3721 ttgataacgt gccttgctaa cgtcgaaatc agcaccaaag ccagttccca tagctgtaaa
     3781 tagactacgg atttcttcgt tggccaaaat cttgtccatg ctggcttttt ctacgttcaa
     3841 aatcttacca cgaatcggta aaatagcctg aaattcacgg tcgcgaccgg atttagctga
     3901 accaccggct gagtccccct caacgatgaa aagctctgtc ttcgttgcat catttgagga
     3961 acaatccgct aacttacctg ggagatttga aatctcaaga cccgatttct tacgagttac
     4021 ctcacgcgca cgcttagcag caatacgcgc cttgcttgcc aagatccctt tttcaacaat
     4081 ccgtctagca atctggggat tctccaaaag aaattctgca aaggcatcag agaaaaggcg
     4141 attggtaatt ttgaccactt cactattccc aagttttgtc ttagtttgtc cctcaaattg
     4201 aggacctggg tgcttaacag aaatgaccgc tgtcaagcct tcacgcacat cctcaccagt
     4261 caaattatcc tcattttctt tgagaatttt atttttcttg gcgtagtcgt tgataacacg
     4321 tgtcagagct gtacggaatc cttgctcatg ggtaccacct tcatgtgtgt gaatattgtt
     4381 ggcgaaacta actacgtttt catgataact cgtcgtatat tgcatggcaa cctcaacggt
     4441 aatatcatcc atctcccctt ctgtatagat aggggtctca aaaatgacat ccttgttctc
     4501 attaagatac tcaacgtagg aagcaatacc accttcatag tgatattcct ttgtttgctc
     4561 tactccctca cgtttgtccg taatagagag atttaaacca cgatttagga aggccaattc
     4621 ttggatccgc ttatttaatt ttgcaaagtc gaactcagtc gtctcagtaa aaatttctgg
     4681 gtcaggtgta aaatgtacag ttgtaccaga acggtctgtt tctccaacaa cctccaaatc
     4741 tgcaacgact tcacctcgtt tatactcttg gaaatagacc tgaccatttt tgtagacatg
     4801 gacgtctagc tgagtagata gggcgtttac gactgatgaa cctacgccgt gcaatccccc
     4861 tgagacctta taaccgcctc cgccaaattt accacctgca tggagcactg taaagacagt
     4921 ttctaccgct ggacgaccag ttttttcctg aatatctacc ggaatcccac gtccattatc
     4981 aataaccgtg atggagttat ctggctcaat ataaacttca attttatccg caaaaccagc
     5041 cagcgcctca tcgattgagt tgtcgacaat ttcccaaacc aagtgatgga gaccttcttt
     5101 agatgttgag ccgatataca tccctggacg cattcgaaca gcttcaagac cttccaagac
     5161 ttgaatctga ctggcatcat attcttgagc cttctcttgt aaatctttga tttcttctgt
     5221 catttctttt ccttattttc tatttgttgc tccttaaaaa tagaaaagcc aatccatctt
     5281 gataaaagcg aaacatattt ttagagcaaa aatcattcta acgaataccc tttattatac
     5341 catattttct aatattttga tagaaaaaag aagaggaaac attagctcca tcttcttcat
     5401 tactttaact atgataaacc attgtttgag ctaggctttc tccatctcca ccaaataaat
     5461 caaccaattt ataggcgaaa tccaaacttg ttccagcacc tcggctagtg ataattggac
     5521 catcaacgac cacatcctct tccagatgaa tacctgacgt aatgtctttt tctttccctg
     5581 ggaaacatgt atagtgacga ctatctaaca aaccggcctt atccagaaca atcggagccg
     5641 cacagattgc tgctactgat tttcctgatg caaccgctct ttgcaattcc gtaatcaggg
     5701 actctgaatc tctaaggtga acagaacctg gcattcctcc tggtaaaaca atcagatcaa
     5761 aggaagacag gtctccatca aagacttggt cagtttgaac acgaataccg tgcgatccct
     5821 ccacttcatg actatctaaa ccaacaatct gacagtcgaa atgagctcga cgaaatacat
     5881 ctacaggggc caatgcttcg atttcttcaa aaccatcggc taaaacaacc gcaactcttg
     5941 tcatataaac caactttcta acgttttatc gtaatttttc tatagcgacg tgatcgattt
     6001 gtttccttct catcagctag tcgtgactga taccccattg acagcactag accaatacca
     6061 atcagatttg aaaccatgga cgaaccacct tgggagataa acggcaaagg aatacctgtt
     6121 aaaggcaaca aacccgttgc agcgccaaca ttttcaaaca catggaacaa gagcatcatg
     6181 atatagccag ttgatatgta ggtgtagtat cgattgtttg acttcaacgt tacccgcagc
     6241 attcgataaa tgagcaacaa gtatagtcca atcaataccg tcccaccaat aaaaccaaag
     6301 tcctctccaa tcaccgtaaa aatcatatca ctttctcgaa ccggtataag aagatttgtt
     6361 ttattgaaac ctagtccttt taagccacca cttccgatag ctaccaaact ttgagcttgc
     6421 tggtaggtcg ttgattgggc atttttaaag ggatcaagcc aggctgcaat acgattgatt
     6481 ttataagtat ccatccccaa attgtggagg aatgtcgttc caccaggaga aataaaaatc
     6541 agcataaatc caccaaccaa aacgatcccc gttaaggcag tcggtaatag aattttccaa
     6601 gaaactcctg ataatagaag cattccgcta aagattgcta caaatactaa ggaagttcct
     6661 aaatctttct gtaaggccaa caaaatcaag actgggatag taaacagtgt catataacca
     6721 atcaacataa aatcctcacg aatttttcga tttggataat atttatgaaa ggtgacaatc
     6781 acccttgaca acataatgat gtaggctatt ttcataaatt cggatggttg aaaaagagtc
     6841 attccaccaa tcgttaccca gttttttgct cccgttgacg ctactaagtc tggactgtag
     6901 aaaaacaaag gcaataccat aagtcctagc ccaagtacgt acaagtaagg tgtgatttgc
     6961 cacagaaact tagtggaaaa gaacatgacc aaaaaagctg ccactgttcc aattcctatc
     7021 caagcaattt gttgaccaac catctgtaca acattatctg gataatcttg actaaccgca
     7081 atgtagagag aaataatccc cacaactaat aaaaaaaaga ccggtaaaat aagcgagtag
     7141 tctactcgac tatcgattgt tcccctattt ttcatcaatt tcctcatact ttcacttcaa
     7201 attcttactc gttccattat agcagaaatc atctctcatt gaaactaaaa atctagttac
     7261 atcagtgggg atacgattta tactcaacga aaatcaaaag tagcctagga aagaagtcga
     7321 agatagaact ggggttcatc
//
LOCUS       DASFRC010000109         7325 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.109, whole genome shotgun sequence.
ACCESSION   DASFRC010000109 DASFRC010000000
VERSION     DASFRC010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7325)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7325)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7325
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.109"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(220..984)
                     /locus_tag="U1087_001579"
     CDS             complement(220..984)
                     /locus_tag="U1087_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM4756044.1"
                     /translation="MKRLLRRIRPTKPLKELTWIDLIIITTILCGNAIYTSTMQWIAS
                     FSATETVETGVLSFSPADNWWALANQGKLFLFALVYLLIRNYDFKQLKVKLEWTVLLW
                     GPLIFIGAGLISDLTFTAFSYIPGLSGGYNFLGYLPYYDWNIMTVLNRFLAVDYSTVI
                     YSLFNGFYEEFFFLGLLLSTDKKKRSLVLLFSTIVRISFHTYQGMVSALVIGVAFGLF
                     YYYMYTRKNDNLLPYFLGHALADMVGTSFFTLFIAG"
     gene            complement(1063..1746)
                     /locus_tag="U1087_001580"
     CDS             complement(1063..1746)
                     /locus_tag="U1087_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjjG family noncanonical pyrimidine
                     nucleotidase"
                     /protein_id="HEM4756045.1"
                     /translation="MHYKHLLFDLDHTLLDFSRGEEVALTQFLTAMEVEDIQAFKEVY
                     RPLNQGMWKDLEKGNITKKELINTRFSRTFAHFGRQVDGREMALRYQEFIGRQGQIFT
                     GADKLLQELTHRGYQIYAATNGVTYIQKNRLLHSLIQSYFKEVFISEQMGTQKPATDF
                     YEKIAEQIAGFQFAQALMIGDSLTADIQGGNNAGMDTVWYNPTHKINNSKAVPTYTIH
                     SYQELLDLL"
     gene            complement(2368..3165)
                     /locus_tag="U1087_001581"
     CDS             complement(2368..3165)
                     /locus_tag="U1087_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM4756046.1"
                     /translation="MNQISISNLEFSYHPDKKILKGLNIILDERSTAIIGQNGAGKTT
                     FVKLLKGLIRPTAGKIMLNGQDLSEQSVAKIAKSIGLIFQNPDDQIFKHTVLDEIMFG
                     PLQMGMTHSQAEQAARKTMSLLGLDGFDKVNPYDLGLSDRKMVSIAAIVAMDTQVVIF
                     DEPTIAQDDAGKKQIQSVIQLLREQGKIVISILHDMDFVAETFERALVFAQGEVLLDG
                     SVREVFSQKDVLEKAYLSQPTTMQLCQALGYDDVFLTPEEFIAYKQE"
     gene            complement(3152..4015)
                     /locus_tag="U1087_001582"
     CDS             complement(3152..4015)
                     /locus_tag="U1087_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM4756047.1"
                     /translation="MAHIKIENLKYQYPFAEKLALDGITCEIRPGEFIGVIGRNGSGK
                     STFCQSLTGLVPNFYRGSYGGKVWIDQSEVKRVEVDDLCQKVGSVFQNPFNQITGSKA
                     TVYEEIAFGLENFGVPKEEMEVRIEESLRLLDIEEYRDRAPFDLSGGQMQRMAIASIM
                     AMKPEVIILDEPTSQLDPQGSEAVFKAIQSLSKQGITVIMVEHKVEKIAAYSDRVMLL
                     DQGKLIAMDTPQAVFSRPDLEKYGVVAPTFTRICKQLGMKLPGSSYYPVTLEEASQLL
                     AKNKGEMYESN"
     gene            complement(4015..4779)
                     /locus_tag="U1087_001583"
     CDS             complement(4015..4779)
                     /locus_tag="U1087_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HEM4756048.1"
                     /translation="MKTMSLFEDKNSFLNNLSPLTKMLYVLATILIPIIAGDLAVFSI
                     TILLSVVLLAHSKVLRQTLPILSVSGFVILTVGIIQGLFRSGNVTPVFQLGPVIFYKE
                     GLLFAAEIALNVCNIILAFCVLILTTKSSDMIEELVRKGFSPRMGYVFVSLFQLIPQM
                     TSRMATITDAQRSRGMETEGSMLVRLKAFLPLVSPVIMSSFIDTRERAIALEVRGFNS
                     KSKKTFINPPIRSQFDRLIQIFCIFGVVLAIVWRVL"
     gene            complement(4790..5401)
                     /locus_tag="U1087_001584"
     CDS             complement(4790..5401)
                     /locus_tag="U1087_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HEM4756049.1"
                     /translation="MNWRNNNPLSLKFNTAALVLIPAGVGINYIGKLIAGVLKLPLWL
                     DSIGTCLSACLAGPIVGAVVGIMNNLIYGLTVDPISTVYALTNAALGIAVGLLAYYGS
                     MKNIRGALFTGIVAGFAAVLVSTPLNMIFWGGTTGNLWGDLVYAGLLAQKFPVWFASF
                     MDEIVVDIPDKIVVLLLVLSLYKSLPKSLLSLYQSNSVIKNLD"
     gene            complement(5406..6152)
                     /locus_tag="U1087_001585"
     CDS             complement(5406..6152)
                     /locus_tag="U1087_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside phosphorylase"
                     /protein_id="HEM4756050.1"
                     /translation="MVLQPDIRCDIEQGARYAILPGDPQRVDRVAEFLDSVEFIAFNR
                     EHKTMRGSYKGVPVLVTSTGMWGASTGIAVEELARIGVECMIRIGSCGALQPEMQMGD
                     LVILNGAVRDEGTSRAYVDPIFPVVPDPDVLFALRGTAMNQGFAHHVGIARSHDSFYI
                     DNELEVDHFWSKKGVLAGDMESAALFTIGSLRGIKTGSILNTVALYDGELKDEINQYV
                     SGENRVTQGEKNEILTTLEAIVMLEKQRKG"
     gene            complement(6164..6843)
                     /locus_tag="U1087_001586"
                     /pseudo
     CDS             complement(6164..6843)
                     /locus_tag="U1087_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775052.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
BASE COUNT         2366 a         1570 c         1095 g         2294 t
ORIGIN      
        1 aaaaatacat tttaacataa ataaaccatt aattcaaaaa aatatgggat aaaaaatatg
       61 ataaagtaat cgaaatttga ctgaacagat taaatatatc agcacaataa aacgggtgat
      121 gataccgagt tgatagaaac tacatatcat catccgtttg tcagctgtag ggagaaagaa
      181 attttatccg attagcttga tgtccgttct tcacattgtt taccctgcaa taaacaatgt
      241 gaagaaactt gtaccaacca tatccgcaag agcatgtcct aagaaatatg gcaataaatt
      301 atcatttttc cttgtgtaca tgtagtaata gaaaaggccg aaggctacac caataacaag
      361 agcagatacc attccttgat aggtatggaa agatatacgt acaattgttg aaaagagtaa
      421 gaccagcgaa cgctttttct tatctgtact caacaataag cctaagaaaa agaactcttc
      481 atagaagcca ttaaacaagg aatagataac tgtgctgtag tcaacggcta ggaaacggtt
      541 gagcactgtc attatattcc agtcatagta aggcaagtat ccgaggaaat tatacccacc
      601 agacagacct ggaatatatg aaaaagctgt aaatgtcaaa tcgctaatca ggcccgcacc
      661 aatgaaaatc agtggtcccc agagtagaac ggtccattct aattttactt ttagctgctt
      721 gaaatcataa ttccgaatca ataaatacac cagggcaaac aggaataatt ttccttgatt
      781 ggctagagcc caccaattat cggctggact aaacgacaga actcctgttt caacggtttc
      841 tgttgcggaa aatgatgcta tccattgcat ggttgaggta taaatagcat taccacataa
      901 aatcgttgtg ataataatca aatctatcca agtgagttct tttaggggct ttgttggacg
      961 aatgcgtctc agtaatcttt tcactttttc ctccttatat ttttgtatat attctttctg
     1021 tataattata tactaaaatc cttataagtt tcttaaaata tcttataaca aatctaataa
     1081 ttcttgatag ctatgaatgg tataggttgg aactgcctta ctattattta tcttgtgagt
     1141 cggattatac caaacagtat ccataccagc attatttccg ccttgaatat ctgctgtcaa
     1201 actgtctcca atcattaagg cttgggcaaa ttgaaaacct gcaatctgct ctgctatttt
     1261 ttcataaaaa tcagtcgcag gcttttgcgt ccccatctgc tcagaaataa atacttcttt
     1321 aaaatacgat tgaatcagtg agtgaagcaa gcgatttttc tgtatatagg tcacgccgtt
     1381 ggtcgctgca taaatctggt agcctcggtg tgtcaattcc tgcaaaagct tatctgcacc
     1441 tgtaaaaatt tgtccctgcc gcccaataaa ttcttggtag cgcaaggcca tctcccttcc
     1501 atcaacttgc cgaccaaagt gggcaaaggt ccgtgaaaag cgggtgttta ttagctcttt
     1561 ctttgtaatg ttcccttttt ccaaatcctt ccacatgccc tgattgagcg gtcgatagac
     1621 ttctttaaaa gcttgaatat cttcaacctc catagctgtc aaaaactggg ttaaggctac
     1681 ttcttctcca cggctaaaat caagaagagt atgatcaaga tcgaataata aatgtttgta
     1741 gtgcaatttt gggattttcc tctctaaaaa caccctctat ttgagtgaaa tcaattcgtt
     1801 tctaatctat agtgatcatc gtaaaattca tttttaagaa ccgctccttt ttaaaccgct
     1861 tagcctcaga tatatcttgg ctttctgtat tttatcggca gatagccctt atatcagtgt
     1921 gtattatctt gatagatagc acaactaagt actcaagtat agacatctta ttgataaagt
     1981 ttttgaattc aactagatct ttatagtaat aattatatca tactaaaaaa tacaaaggct
     2041 ataattttcc atcaaagttt caatgtgaaa tatttaccct ctatccacaa atcaagtctt
     2101 ctaaattaaa tggaaaaata tatacatttg taaaattata aaattttctg attcaaattt
     2161 ttaatttaca aatttatagt gatacagaaa ggagaacctc gtccgcttca aaaagattaa
     2221 aagaatagaa acagaactac ctcaatctgc aatctctcac aaacttagaa ttagactaat
     2281 atcgttcaat aattaggaag cagtatagaa taacattata aaaaccaagc ggttaccagg
     2341 aatctcctag attgtaattt aagtacatca ctcctgtttg taagctatga actcttcggg
     2401 agtgagaaaa acgtcatcat agcctagtgc ttgacataat tgcatcgtgg ttggctgaga
     2461 tagataggct ttttcaagga catctttctg tgaaaaaacc tctcgaacac ttccatctaa
     2521 caaaacttct ccttgtgcaa agacaagggc acgttcaaac gtttctgcta cgaagtccat
     2581 atcatgcaaa atggaaataa ctatttttcc ttgttctctc aacaattgta tcaccgattg
     2641 aatctgtttt tttcctgcat catcttgagc aatcgttggt tcatcaaaaa tcacaacctg
     2701 tgtatccata gcaactattg cagcgattga caccattttt ctatcggata atcctaagtc
     2761 gtagggattt accttgtcaa atccatctaa gcccagcaag gacatagttt ttctagctgc
     2821 ctgttctgct tgagaatgag tcatgcccat ttgcaatggt ccaaacataa tttcatctaa
     2881 taccgtatgt ttaaaaattt ggtcatctgg attttgaaaa atgagtccaa tacttttagc
     2941 aattttagcg acagattgtt cgcttaaatc ttgtccattt aacataattt taccagccgt
     3001 cggacgaata aggcctttca gtaactttac aaatgtagtc tttccagcac cattttgtcc
     3061 aataatcgcc gtcgaacgct catctaaaat aatattcaac ccttttaata tttttttatc
     3121 cggatgatag gaaaattcta agttactaat actaatttga ttcatacatt tcccccttat
     3181 tctttgccaa caactgacta gcttcctcaa gtgtcacagg ataataggaa cttcctggta
     3241 gcttcatgcc taactgcttg catattctag taaaggtagg tgctacaact ccatactttt
     3301 ctagatctgg tcgagaaaac acggcttgtg gtgtatccat ggcaattagt tttccctgat
     3361 caagcaacat tacccggtca ctgtaagctg cgattttttc aaccttatgt tccaccataa
     3421 ttacagtgat gccttgctta cttaaagact gaatagcttt gaaaactgcc tcactacctt
     3481 gtggatcgag ttgagaagtt ggctcatcta aaataatgac ctctggtttc atcgccataa
     3541 tgctagcaat tgccattcgt tgcatttgtc ctcctgacaa gtcaaacgga gctcgatcac
     3601 ggtactcttc aatgtccaac aaacgtaaac tttcctcaat tcgaacttcc atttcttctt
     3661 ttgggactcc gaaattctcc aaaccgaaag caatttcttc atacacagtc gccttagaac
     3721 ctgtaatttg attaaatgga ttttgaaaaa cgcttccgac tttttggcac aagtcatcaa
     3781 cctctaccct cttcacttcg gattgatcaa tccatacctt tcctccatac gaaccacggt
     3841 aaaaattcgg aacaagtcct gttaatgatt gacagaatgt cgattttcca gaaccatttc
     3901 gaccaattac cccaatgaat tcacctggac gaatctcaca cgtgatgccg tctagagcca
     3961 acttttcagc aaagggatat tggtatttta gattttcaat tttaatatgt gccattatag
     4021 aaccctccag acaattgcta gcacaactcc aaaaatgcag aaaatttgaa tcaatcgatc
     4081 aaattgcgaa cgaatcggtg gattgataaa tgtcttttta gattttgaat taaatcctcg
     4141 aacctctaag gcaattgcgc gttctctcgt atcaataaaa gaactcataa ttacaggaga
     4201 gaccaatggc aaaaaagctt ttagccgaac caacatcgaa ccttctgttt ccatcccacg
     4261 acttctttgt gcatccgtaa ttgttgccat tcggctcgtc atctgaggga ttaattggaa
     4321 caaggagaca aacacatatc ccattcgagg tgagaagcct tttctaacta attcttcaat
     4381 catgtccgac gattttgtcg ttaaaatcag aacacagaaa gctaaaataa tattacatac
     4441 atttaaagca atctcagctg caaatagcaa gccttcctta taaaaaatga ctggacctaa
     4501 ttgaaaaaca ggcgtgacat taccacttct aaacaatcct tgaataattc ctaccgttaa
     4561 aataacaaac ccagatacac tcagaattgg taaggtctgc cttaacactt tagaatgtgc
     4621 taacaaaacg acacttaaaa gaattgtaat gctaaataca gctaaatcac ctgcaataat
     4681 cggtatcaga atggtcgcaa gcacatacaa catcttagtt aacggagaca aattattcaa
     4741 aaatgaattc ttgtcttcaa acaaactcat cgttttcatg gagacctcct taatctaggt
     4801 tcttaatcac actattactt tggtaaagcg atagtagact ctttggtaaa ctcttataca
     4861 agcttagcac aagtaataat acgactattt tatctggaat atctaccact atttcatcca
     4921 taaacgatgc aaaccaaact gggaattttt gagctaatag acctgcataa accaagtctc
     4981 cccataaatt tccggttgta ccaccccaaa agatcatatt caatggcgtt gataccaaga
     5041 ctgctgcaaa tccagcaaca attcctgtaa ataaggcacc cctgatgttc ttcatactac
     5101 cgtaataagc caataaaccg actgcaattc ctagggctgc attggttaag gcataaactg
     5161 tagaaatcgg atccaccgtt aatccataaa ttaaattatt cataattccc acaacagcac
     5221 ctacaattgg accagccaaa caagccgata aacaagttcc aatcgaatct aaccaaagtg
     5281 gtaatttgag aacccccgca atcaatttac caatataatt aatcccaacc cctgccggaa
     5341 tcaacactaa agctgcagta ttaaacttca atgataatgg attattattt ctccaattca
     5401 tgattctatc ctttcctttg tttttctagc atcacaatcg cttccaatgt cgtaagaatt
     5461 tcattttttt caccttgtgt cacacgattt tcgccagaca catattggtt gatctcatct
     5521 ttcaattcac catcatatag tgccactgta tttaaaatgg agcccgtttt aatcccacgt
     5581 aggctaccaa tagtaaataa agctgcactt tccatgtctc cagctaatac acctttttta
     5641 gaccaaaaat gatcaacttc caactcatta tcaatataaa aactatcatg gcttctagca
     5701 attccaacgt gatgggcaaa accttggttc atagcagttc ctcgtaaggc aaataaaaca
     5761 tcagggtctg gaaccaccgg aaaaattgga tcaacatacg ccctagaagt cccctcatca
     5821 cgtacagccc cattcaaaat gaccaaatct cccatctgca tctccggttg caatgctcca
     5881 catgagccaa tccgaatcat acattccaca ccgatacgtg ccaactcttc taccgcgatt
     5941 cctgttgaag caccccacat ccctgtagag gtaactaaca ctggaacccc cttatagctt
     6001 ccacgcattg ttttgtgttc acgattgaat gctataaatt ctacactatc taaaaactct
     6061 gctactctgt ccaccctctg tggatcgccc ggcaatatgg cgtatcttgc accttgttct
     6121 atgtcacaac gaatatctgg ttgtagtacc atctttcttt ctcctaatct agtaaactcg
     6181 ttaaagcttg gtggtccaat agttgaatct taccatgacc taaatcgatg atttgctttt
     6241 ctttaaattc ttttaacaat cgattgatac tccgttgggt aaccgccatc tcttgactca
     6301 atctttccga attaaactgt aatgatgcta atttttttcc tccaaattgc tccagcaaat
     6361 agtatgcaag tcgagtcgct gtctaagatc atatagacta ttgcgcttca tacgattaca
     6421 catacgatag gaattttcac aaatcttctt aataaacaaa ctactaaagt tttgatctaa
     6481 tgccatccaa ctcgaaagtg tatctttatc tatttccaaa gcgataatat caccaactcc
     6541 tttcacataa ctaatatacg gaacttgttg aaatatttcc atttctccaa tcaagtcacc
     6601 agactgacta caacaaagaa aatatttttt cccattttcc gattccgagt aaacattgac
     6661 cctcccctca acaataatat acatatactg atagatctcc ccttgctcca actcaaattc
     6721 accatcttcg aatctcttga catgtatttt acgcaagatt tcatatgggc aaagctttag
     6781 taatgaatat acatctggat tcatctcgat tatatccaat agtagatgca ttttcaaaat
     6841 catacacgct cctttcttta ttgttaccac aacaatgata acgctttctt ttttgcaagt
     6901 aaaggaattc cgtccgattc aatagcaaaa aaacatatcc aatgtcataa tacacaaaca
     6961 ttttaaggac aaatgtcttc ttgttttacg atttgttcca gatttctaag ccatacttta
     7021 taaataaatt ttgataaaat cttcctaatt ccaagagctt ttaaactcta atttgtatta
     7081 cttaacttct actcatttcg aatgatgaat gtttgtattg ctaaatgcgg attccattac
     7141 aaaagatgat tttatttttt gtgaagtagt cagattttct gaaatattta acacttattt
     7201 atataacata ataaaattgc gctattttta aggcttttga tttttgtaaa gtagaaaaac
     7261 tatttttctt gccactaata tcaactaaga attcgtttta atatcaaatg aaaagaccca
     7321 aattg
//
LOCUS       DASFRC010000110         7146 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.110, whole genome shotgun sequence.
ACCESSION   DASFRC010000110 DASFRC010000000
VERSION     DASFRC010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7146)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7146)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7146
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.110"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(45..1157)
                     /gene="glf"
                     /locus_tag="U1087_001587"
     CDS             complement(45..1157)
                     /gene="glf"
                     /locus_tag="U1087_001587"
                     /EC_number="5.4.99.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-galactopyranose mutase"
                     /protein_id="HEM4756051.1"
                     /translation="MKKYDYLVAGAGLFGAVFAHEAAKKGKKIKVIEKRDHIAGNIYT
                     KEVEGIQVHEYGAHIFHTSEREIWDYVNQFAEFNRYTNTPVANYKGEIYNLPFNMNTF
                     NKLWGVVTPAEAEAKIAEQRAVLGGKTPENLEEQAISLVGTAIYEKLIKSYTEKQWEK
                     PCTELPAFIIRRLPVRLTYDNNYFNDTYQGIPIGGYTQIVEKMLEHENIDVETNVDFF
                     ANKEDYLADYPKIVFTGMIDEFFDYQLGELEYRSLRFETEVLDMENYQGNAVVNYTDS
                     ETPYTRIIEHKHFEFGTQDKTIITREYSKTWKRGDEPYYPVNNDRNNKLYTAYKRLAE
                     QQENVIFGGRLGHYRYYDMHQVIGVALQCVRNEVGE"
     gene            1383..1645
                     /locus_tag="U1087_001588"
                     /pseudo
     CDS             1383..1645
                     /locus_tag="U1087_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558050.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase family protein"
     gene            complement(1720..3078)
                     /gene="rlmD"
                     /locus_tag="U1087_001589"
     CDS             complement(1720..3078)
                     /gene="rlmD"
                     /locus_tag="U1087_001589"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HEM4756052.1"
                     /translation="MLKKNDIVEVEVVDLTHEGQGVAKIDGFVFFVDNALPGEKISMR
                     ILKLKKNIGFGKVEQWQSFSPDRNQDLDLTYLRTGIADLGHLTYPAQLAFKKKQVENS
                     LRKIAGISEIAVADTLGMDNPLAYRNKAAVPVRRVNGQLETGFFRKNSHDLVPIEDFY
                     IQHKEIDALVLATRDLLRKLDLKPYDEKEQTGLVRNIVVRRGHYSGQLMLVLVTTRPK
                     IFRVETLIERLTSQFPNLVSIVQNINDQNTNAIFGQEFRLLHGSETITDTMLGNEFEI
                     SAPSFYQVNTEMAEKLYQTAIDFAELSADDVVIDAYSGIGTVGLSFAKQVKHVYGVEV
                     VEKAVLDSQKNAARNGIDNVTYVCDSAESAMQKWVADGVKPTVIFVDPPRKGLTESFI
                     KASTSVKPEKIVYISCNVATMARDIKLYEELGYKLTKVQPTDLFPNTHHVEVVSLLEK
                     RN"
     gene            complement(3145..4467)
                     /locus_tag="U1087_001590"
     CDS             complement(3145..4467)
                     /locus_tag="U1087_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000032347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HEM4756053.1"
                     /translation="MNKNNNILTHHEQLRLDYLQKNIHYLNDKESRELDYLLYKKELR
                     ERHGSPRQSLRSFTPTAYEDDFEEDYFEEDDEQEELLPRYPERKSRKTRQAKPQRFQS
                     PRIEPKVKVPKPKKARKKGGFKRFIGFVLLAIALVIVAMGYSFFKGMNSVSEKPVAEV
                     FNGVDTSNGTNILILGTDGRVGESSGETRTDTIMVLNVNNTDNKVKLVSFMRDTLVDI
                     EGYEYKLNTAYTLGEQDNQQGAEEVRKALKNNFDIDIKYYAMVDFATFATTIDTLFPE
                     GVTIDAQFSTINGEVVSSVEVPNDLQLEENAPAYQTIQVGVQQMDGKTLLNYARYRSD
                     DEGDFGRTRRQQEVLSAVMTQAKNPMKLFSGSEAIGKVVAMTPTTVPQSFMWLQGPGL
                     LLDAANGIERVTIPENGDWIDDYDMYGGMALRVDFEKYQQRLAELGLR"
     gene            complement(4479..5306)
                     /gene="pheA"
                     /locus_tag="U1087_001591"
     CDS             complement(4479..5306)
                     /gene="pheA"
                     /locus_tag="U1087_001591"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HEM4756054.1"
                     /translation="MQVAYLGPRGSFTHQVAQQAFPSADLQAFETITEVIKAYETGEV
                     TYSVIPVENSIEGSVHETIDYLFHQAEIHAVAEIVQPIAQQLLATSADKAVEVIHSHP
                     QAIAQGKKYIQEHFPQARIEITASTAYAARFVAEHPEQPFAAIAPQAAAVEYGLEVIA
                     QDIQEISENFTRFWILGDKAPSIALEQVAKKVSLALTLPDNLPGALYKAMSVFSWRGI
                     SLTKIESRPLKTALGEYFFILDLDNQSEELLAYSQKELTSLDITYKVLGNYLVYMTS"
     gene            complement(5297..5788)
                     /locus_tag="U1087_001592"
     CDS             complement(5297..5788)
                     /locus_tag="U1087_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEM4756055.1"
                     /translation="MPIVLLGFMGVGKTTTAHLLNLPVYDMDHIIEERIGMPIADYFS
                     LEGEASFRQLETEVLKELLDLPSNCIVSTGGGVIKSEVNRELLLANREDNVLLTASFE
                     VSYQRIRKDRQSQRPLFLQCSKEEFEALYRERMALYQGLADTVIDTDKLNPEQVARKI
                     LCK"
     gene            complement(5797..7077)
                     /gene="aroA"
                     /locus_tag="U1087_001593"
     CDS             complement(5797..7077)
                     /gene="aroA"
                     /locus_tag="U1087_001593"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HEM4756056.1"
                     /translation="MNLRRSVEKLKGTIRVPGDKSISHRSIIFGSLAKGVTRVHDILR
                     GEDVLSTMQVFRDLGVKIEDNGDIVEVHGVGFDGLQAPKNDLDMGNSGTSIRLISGVL
                     AGQDFEATMFGDDSLSKRPMDRVTIPLSQMGVEISGQTERDLPPLTIKGNKNLKPIRY
                     QLPVASAQVKSALIFAALQAEGESVIVEKELTRNHTEDMIVQFGGQLEVNGKEIRIQG
                     GQEFIAQEITVPGDISSAAFWLVAGLIVPGSKIVLENVGINETRTGILDVIKAMGGKM
                     TLSNIDELAKSATITVETSELKATEIAGELIPRLIDELPIITLLATQAHGTTIIRDAE
                     ELKVKETDRIQVVADALNSMGATIEPTEDGMIIHGPTALHGAEINTFGDHRIGMMTAI
                     AALLAKDGEVVLERAEAINTSYPAFFEHLNSLMD"
BASE COUNT         2021 a         1642 c         1276 g         2207 t
ORIGIN      
        1 aacttctgcc aagaatcaat tactactttg atgacttctc aaaatcattc cccaacttca
       61 tttctcacac attgcaaggc cacaccgata acctggtgca tatcgtagta acgataatga
      121 ccaagacgtc caccaaaaat aacattctct tgttgttctg cgaggcgttt ataagcagta
      181 tagagtttgt tgttgcgatc attgttgact ggataatatg gctcatcgcc tcgtttccag
      241 gtcttcgaat actcgcgggt aataatggtt ttatcttgtg taccaaattc gaaatgtttg
      301 tgttcgatga ttcgagtata tggtgtctcg ctatctgtat agttgacaac cgcattccct
      361 tgatagtttt ccatatccaa cacttctgtc tcaaatcgaa ggctacgata ttccaattca
      421 ccaagttggt aatcaaagaa ttcatcaatc attcctgtaa agacaatctt tggataatca
      481 gctaaatagt cttccttatt ggcaaagaaa tcaacatttg tctccacatc gatattttca
      541 tgttccaaca ttttttctac aatctgcgtg taaccgccga ttggaatacc ttgataagta
      601 tcgttaaagt agttattatc ataagtcaaa cgcacgggca aacgacggat gatgaaggct
      661 ggtaactccg tacacggctt ttcccattgt ttctcggtgt aggacttgat caatttttca
      721 tagatggctg taccaactag tgagatggct tgctcttcta agttctcagg tgtttttcca
      781 cccaaaacag cacgttgctc tgcaattttt gcctctgcct ccgcaggagt aaccacaccc
      841 catagtttat tgaaggtatt catgttgaat ggaagattgt aaatctcacc cttgtagttg
      901 gcaactggtg tgtttgtgta gcggttgaac tccgcaaact gattcacata gtcccaaatt
      961 tccctctctg aagtgtggaa aatatgtgcg ccatattcat ggacttgaat accttctact
     1021 tcttttgtat agatgttacc tgcaatgtgg tctcgttttt cgataacctt tattttttta
     1081 ccctttttag ctgcctcatg agcaaagact gcaccgaaca gcccagcacc tgcaactaga
     1141 taatcgtatt ttttcatatt gtttttacat ttaactttct agggaagtca tttctccaaa
     1201 tcttttacta gactatcatt tataccatcg tctcataacc aataaagaat gagttgtgat
     1261 aatctcttcc ctaaaacctt tcacttaaag cttgcaatat ccaatattat aacagacaat
     1321 acaaccttca tcaagtttag caatagactt gttcggtaac tcaaaggcgg tatactaaag
     1381 gtatggaaac aacatacgaa aaaatcttaa aattaaactc agagaatttc aaattgttga
     1441 tagttgttaa aaaaaagcga cgtttcaact gatgcttgat tgtctcactg acgcttatca
     1501 agagcaacac cgaaaaggag gacatccacg ccgtctaagt atggaagagc agctcatcat
     1561 gaccttgcgc tacttacgct attacccgac tcaatgcttg ttggcatttg attttggtgt
     1621 aggtgtggca actgtcaaca tgatgcgtat ttgagagttc aaaggtcctg cggacctttg
     1681 aagcagcttg ccagaaaaca agagagtaag ctggacaatc taattgcgtt tttctaacag
     1741 actcacaact tcaacatgat gtgtattcgg aaataaatcc gtcggctgta ccttcgtcaa
     1801 tttgtacccc aattcctcat aaagtttaat atcacgcgcc atcgttgcca cattacagga
     1861 gatatagacg attttctctg gttttacaga agtacttgct ttgataaaac tttctgtcaa
     1921 accttttcgt ggtgggtcga caaaaatcac agtcggtttg actccatctg ccacccattt
     1981 ttgcatagcg gattctgcac tatcacagac ataggtaaca ttatcaatcc catttcgagc
     2041 agcattcttc tgactatcaa ggacagcctt ttcaacgact tctacaccgt aaacatgctt
     2101 aacttgtttt gcaaaggaga gaccaactgt cccaatacct gaataggcat caatcacgac
     2161 atcatctgcc gacaattctg caaagtcaat ggcggtctga tagagttttt cagccatttc
     2221 tgtgttgact tgatagaaag acggtgcaga aatttcaaat tcattgccca acatggtatc
     2281 tgtaatagtt tcactgccat gcaaaagacg gaattcttga ccgaatatag cattggtatt
     2341 ctggtcatta atattctgaa cgatagaaac aagatttgga aattggcttg tcaaacgctc
     2401 aataagggtt tcaacacgga aaatcttcgg acgagtcgta actaaaacta gcatcaactg
     2461 acctgaataa tgaccacgac gaacaacaat atttctcaca agtcctgtct gttctttctc
     2521 atcgtaaggc ttcaagtcta attttctcaa gaggtcacgt gtcgctagaa ccaaggcatc
     2581 aatttcctta tgttgaatgt aaaaatcctc aatcggaact aaatcatgtg aattttttcg
     2641 gaaaaatcct gtttctaact gcccattcac acgacgaact ggaacagctg ccttattacg
     2701 ataagcaaga ggattgtcca ttcccaaagt atctgctact gctatttctg aaatgcctgc
     2761 aatcttacgt agactattct caacttgttt tttcttaaaa gctagttggg ctggataagt
     2821 gagatgcccc aagtcagcaa tacctgttct tagataggtc aaatccaagt cctgattacg
     2881 gtctggtgag aagctctgcc attgctccac cttaccaaaa ccaatatttt tcttaagttt
     2941 taagatgcgc atggaaattt tctcgcctgg aagagcattg tctacaaaga agacaaaacc
     3001 atcaattttt gccacaccct gcccctcatg tgtcaaatct acaacttcta cttcgacaat
     3061 atcgtttttc tttaacataa ttctactttc tatttttgga ccactaaaaa agtgaccgaa
     3121 gtcacttcta gtataccata tttcttaacg caggcctaac tcagccaagc gctgctggta
     3181 tttttcaaaa tcaacacgaa gagccatacc accatacata tcatagtcgt caatccagtc
     3241 tccattttct gggattgtaa cacgttcgat accatttgcc gcatccaata gaaggcctgg
     3301 tccctgtagc cacataaagc tttgtggcac tgtggtcgga gtcatggcca caaccttacc
     3361 tatagcttcg gagccagaga atagtttcat tggattttta gcctgtgtca taacagcaga
     3421 tagcacttcc tgttgacgtc tcgtacgacc aaaatcacct tcatcatccg aacgatagcg
     3481 cgcgtagtta agtaaggtct taccatccat ctgctgtaca ccgacctgaa tcgtttgata
     3541 agcaggagca ttttcttcca gctgtaaatc attcggcact tctactgagc taacgacttc
     3601 accattaata gttgaaaact gtgcatcaat cgttacgccc tcagggaaaa gtgtatcaat
     3661 cgttgtcgca aaggttgcaa aatccaccat cgcatagtac ttgatatcaa tgtcaaaatt
     3721 attcttcaac gccttccgaa cttcttcagc cccttgctga ttatcctgtt ctcccaaagt
     3781 ataggcagta ttgagtttat attcatatcc ctcaatatcc accaaggtat cccgcataaa
     3841 gctaacaagt ttgactttgt tatccgtgtt attcacattt agaaccatga tggtatccgt
     3901 tcgagtttca cctgagcttt cgccaacacg accgtctgtt cccaaaatta aaatatttgt
     3961 cccattcgat gtatctacgc cgttgaagac ctcagctact ggcttctcac tcacgctatt
     4021 catacctttg aaaaaactat agcccatcgc tacaatcact agcgctatag caagcaatac
     4081 gaaaccaata aagcgcttga aaccaccctt tttacgtgct tttttaggtt taggcacttt
     4141 cactttgggc tcgatacgag gagactgaaa ccgttgaggt ttggcttgtc ttgtttttct
     4201 ggatttacgt tcaggatagc gaggcaacag ttcctcttgc tcatcatcct cttcaaaata
     4261 atcttcctcg aagtcatctt cgtaagccgt tggtgtgaag ctacgtagag attgccttgg
     4321 acttccatgc cgttctctca gctctttttt atataataga taatccaact cacgactttc
     4381 tttgtcattt aagtagtgga tatttttttg caaataatct aacctcaatt gttcatgatg
     4441 ggttaggata ttattgtttt tattcatctg tcttcatcct agctggtcat atagaccagg
     4501 taattcccta gtactttata ggttatatct aaactagtca attctttttg agaataggct
     4561 aataattcct cagactgatt gtcaagatcc agtatgaaaa aatactcacc caaagccgtt
     4621 ttcaggggcc ggctttctat ttttgttaag ctgattcctc tccatgagaa aacagacatg
     4681 gccttataca aggctcctgg caggttatct ggcaatgtca gtgcaagact gactttttta
     4741 gctacttgtt ccagggcaat agacggagcc ttatccccca aaatccaaaa acgtgtaaaa
     4801 ttctcgctga tttcctggat gtcttgcgca attacctcca gtccatattc aactgctgcc
     4861 gcttgcggag caattgccgc gaatggttgt tcagggtgtt ctgccacaaa gcgagcagca
     4921 taggctgtac tagctgttat ttcaatacga gcctgaggaa aatgttcctg aatatatttc
     4981 ttcccctgag caattgcctg cggatgagaa tggataacct ctacagcctt atcggcactc
     5041 gtggctaaca gttgttgggc aatcggttga acaatctcgg caaccgcatg aatctccgcc
     5101 tgatgaaaga gatagtcaat cgtttcatga acactacctt caatcgagtt ctctactgga
     5161 ataacggaat aggtaacttc tcccgtttcg taggccttga taacctctgt aatcgtctca
     5221 aaagcctgca aatccgcact cggaaaggcc tgctgggcca cttgatgtgt aaaagaacca
     5281 cgaggtccta gataggctac ttgcataaaa ttttccttgc tacttgttct ggattcagtt
     5341 tatctgtatc gattacagta tcagctaaac cttgataaag tgccattcgt tcacgataga
     5401 gggcttcaaa ctcttcctta ctacactgta aaaagagagg tctttgcgat tgtctatcct
     5461 tacgaattct ctgataggaa acttcaaagg aggcagtaag aagtacattg tcctccctat
     5521 ttgccaacag caattccctg tttacttcag atttaatcac cccaccacca gttgacacga
     5581 tacaattact aggtaagtcc agcaattctt tcagtacctc tgtctccagt tgtctaaacg
     5641 aagcctctcc ttcaagactg aaatagtcag caataggcat accaatccgt tcttcaatga
     5701 tatggtccat atcgtaaacg gggagattta acaaatgtgc tgttgttgtt tttccaactc
     5761 ccataaatcc aagtaaaacg attggcatac gttctcctaa tccatcaaac tatttaagtg
     5821 ttcaaagaag gcaggatagc tagtgttgat agcttctgct ctttccaata caacttctcc
     5881 atctttggcc aacaaggcgg caatggcagt catcataccg atacggtggt caccaaatgt
     5941 attgatttca gcaccatgta aagcagttgg tccgtgaata atcataccat cttctgttgg
     6001 ttcaatagtt gctcccatac tatttagagc atctgcaaca acctgaatac gatccgtttc
     6061 tttaactttc aactcctcag catcacgaat aatcgttgtt ccatgtgctt gagtcgctag
     6121 taaggtaata attggcaact catcaatcaa acgaggtatc aattcgcctg caatctccgt
     6181 agccttcaat tccgacgttt caactgtaat ggttgctgat tttgcaagtt catctatgtt
     6241 agaaagggtc atttttccgc ccatagcttt aatgacatct agaataccag tccgagtttc
     6301 attgattcct acattttcaa ggacaatttt tgaacctggt acgattaagc cagcaaccaa
     6361 ccaaaaagca gcacttgaaa tatctcctgg aactgtaatc tcttgggcaa taaactcctg
     6421 accaccttgg atgcggattt ccttgccatt gacttctaac tgtccaccaa actggacaat
     6481 catatcttct gtatggtttc gagtcaattc tttttctacg atgaccgact ctccctcagc
     6541 ctgcaaggca gcaaaaatca gagctgattt tacttgggca gaggctacag ggagttggta
     6601 gcgaattggt tttaaattct tattcccttt gatggtcaac ggaggtaggt cacgttcagt
     6661 ttgtccagaa atctctactc ccatttgact gagtggaata gtcactcggt ccatgggacg
     6721 tttggacaag gaatcatcac caaacatagt cgcctcaaag tcttgacctg ccaaaacgcc
     6781 tgaaatcaaa cgaatcgagg ttccagaatt tcccatatcc aaatcatttt ttggcgcttg
     6841 aagaccatca aaaccaacac cgtgtacttc aacaatatca ccattgtctt caatttttac
     6901 acccaaatca cgaaagacct gcatggttga caagacatct tccccacgta aaatatcgtg
     6961 gacacgggta acaccttttg caagggaacc aaaaataata gagcgatgac taattgattt
     7021 atctcctggg acacgaatcg ttccctttag tttttctacg cttcttctta agttcatatc
     7081 cttacctcaa actagtatca tttctatttt atcatattta taaaatattt tctgattttt
     7141 atgaca
//
LOCUS       DASFRC010000111         7083 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.111, whole genome shotgun sequence.
ACCESSION   DASFRC010000111 DASFRC010000000
VERSION     DASFRC010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7083)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7083)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7083
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.111"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(77..1201)
                     /locus_tag="U1087_001594"
     CDS             complement(77..1201)
                     /locus_tag="U1087_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEM4756057.1"
                     /translation="MKRKRTNKPQHMRRKRKTPIMKNNKKMLYTSSLALSLFSTGMIS
                     TNVLAIEWAPRTVSEISPEIVQEEGKMTYTVQYGDTLSAIASAMNIDMDLLAKINQIA
                     DVNLIFPDTVLTTTVDLTTNQVTQVEIEAPVQGNTNETVQATVDLTTNQVTVEDTVVP
                     LDQISSVTDSAPVEEVVEQPVAEASVEEVVEQPVAEASVEEVVEQPVVEAPVEEVVEQ
                     PVVEAPVEEVAEQPVVEAPVEQPVVETPQVTALSTTTTSTSAYDVGLQPQVAAFRAEV
                     ANAFGITSFSGYRPGDSGDHGKGLAIDFMVPQSSALGDQVAAYAVVNLASKNINYIIW
                     KQRFYAPYDSIYGPAYTWNLMPDRGSVTENHYDHVHVSFN"
     gene            complement(1544..2527)
                     /locus_tag="U1087_001595"
     CDS             complement(1544..2527)
                     /locus_tag="U1087_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEM4756058.1"
                     /translation="MEVQMKYKWATLGTGVIANELVQALQDMGGNLYSVANRTYDKGV
                     EFAQKYGIEKVYREIDEVFEDPEVDIIYISTPHNTHINYLRKALKAGKHVLCEKSITL
                     NSEELAEAIQLAEENQVILAEAMTIFHMPIYRQLSEVVASGKLGDLKMIQMNFGSYKE
                     YDMTNRFFNKNLAGGALLDIGVYALSFVRWFMTEKPSQVLSQVKLAPTGVDEQVGILL
                     SNDAGEMATTALTLHAKQPKRGTIAYDKGYIELYEYPRGQKAVITYTEDGSQEVIEAG
                     ETARALSYEVADMEKAVAGIENTMHLAFTQDVMEIMTQLRKEWGLVYPEEM"
     gene            2612..3502
                     /locus_tag="U1087_001596"
     CDS             2612..3502
                     /locus_tag="U1087_001596"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000146880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HIII"
                     /protein_id="HEM4756059.1"
                     /translation="MNTVVLKASAQQKQAMMAHYDRYRQTSKNPYIEAFFKLTGASLS
                     IYTSGKVVFQGEMAEQEAGVWGYEPESSGQTTIPGQNLPMIGTDEVGNGSYFGGLAVV
                     ASFVRPEDHAFLKSLGVDDSKKMTDQKICQIAPLLKEKIPHQALLLSPKKYNEVIEQG
                     YNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSSQNYQKYLKKEANQFANPVTLEE
                     KAEGKYLAVAVSSIIARAMFLENLVQLGQLVGMNLPSGAGSKSDQVAASILKQYGMAG
                     LNQTAKLHFANTQKAQKLLK"
     gene            3512..4141
                     /gene="lepB"
                     /locus_tag="U1087_001597"
     CDS             3512..4141
                     /gene="lepB"
                     /locus_tag="U1087_001597"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEM4756060.1"
                     /translation="MGAIQKTKRSPLVAFLAEWGIFLLFMAAFFASRYFIWNPVSVDG
                     HSMDPTLQHQEKLIMLKTTSIDRFDIVVASETDSDGKEKLIVKRVIGMPGDTIRYEND
                     VLYVNDQKVDEPYLDEYLAAFQKDKLQEVYSYNKQFQAVAQSAEAFTQDANGYVDFTV
                     TVPEGQYYLMGDDRLVSLDSRSVGTFSRENIKGEVVFRMWPLNRIGTVD"
     gene            4205..6694
                     /locus_tag="U1087_001598"
     CDS             4205..6694
                     /locus_tag="U1087_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RecD-like DNA helicase"
                     /protein_id="HEM4756061.1"
                     /translation="MNEVYFTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVT
                     GTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERSKPTSAGLVKYFSSEHFKGIGRK
                     TAEKIVELYGEDTIDKILAEPEKLTQITGLSSKNMQAFVEKLRLNYGTELILAKLAEY
                     GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDSPQRF
                     RAGMLFSLIHRSMETGDTYVEARDLLEATLELLEKSRHTELDPAAVAKELTGLIADDK
                     VQQEGTKIFDNSLYFAEHGIHTNLTRLMGKNGFKPFPRADVEAAIAELESISSLTYDN
                     IQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAP
                     TGRAARRMNELTGLPSATIHRHLGLVEGQEESYRDDYLDADFIIVDEFSMVDTWLANQ
                     LFQNISSQTQVLIVGDAEQLPSVSPGQVLADLLKIDKLPSITLERIYRQSDDSTIVTL
                     ASQIRQGALPSDFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQILAPMY
                     RGAAGIDQLNTMTQALLNPLEEGELEFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGY
                     ITDLLPAKYTDSKQDEITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILP
                     ITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAVKNAGTVRKTYLVPRFQGEMA
                     EQESKESLIKKDESKTATTTQTQPPTQPDRKEQVKVVKENNQQLSLLDQDQPKKTSPQ
                     PTEYILTVDNLLTIDPMIGIEQADIEEFFKA"
     gene            complement(6733..>7083)
                     /locus_tag="U1087_001599"
     CDS             complement(6733..>7083)
                     /locus_tag="U1087_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM4756062.1"
                     /translation="QALQTMELEVVMLTGDNEKTAQAIAKEVGIEQVVSQVLPDDKAN
                     QVKFLQEQGKTVAMVGDYDHAFGKSYGVLMREWNLLARAVFVLNADNEIVYVEYLDNV
                     NEHPDYKAALEAVK"
BASE COUNT         2008 a         1753 c         1450 g         1872 t
ORIGIN      
        1 tcattcattc gactatatta ctacatataa agcaataacc gtttcagata aggctgaaac
       61 ggttattttt gtaagtctaa ttaaaagata catgcacatg atcgtagtgg ttttctgtaa
      121 cgctaccacg gtctggcatc agattccatg tataggctgg accatagata ctgtcatacg
      181 gcgcatagaa gcgctgtttc caaatgatgt agttgatatt tttagaagct aagtttacaa
      241 ctgcataagc cgccacttga tccccaagtg ctgaactttg tggtaccatg aagtcaattg
      301 ccaatccctt accatggtcg ccagaatcac caggacggta acctgagaaa gaagtaatac
      361 cgaaggcatt agctacttct gcgcggaagg ctgctacctg aggttgcaaa ccgacatcat
      421 aagcacttgt acttgttgta gtggttgata gggctgtcac ttgtggagtt tcaactacag
      481 gctgttctac aggtgcttct acgacaggtt gttctgcaac ttcctctaca ggtgcctcaa
      541 ccacaggttg ctctacaact tcctctacag gcgcttctac tacaggttgc tctacaactt
      601 cctctacaga cgcttctgct acaggctgtt ctacaacttc ctctacagac gcttctgcta
      661 caggttgctc cacaacttcc tctacaggtg ctgagtcggt aactgatgaa atttgatcca
      721 acggaacaac cgtatcctca accgttactt gattggttgt taggtcaaca gttgcctgaa
      781 cggtctcatt tgtgtttccc tgaacaggag cttcaatctc aacctgagtc acttgattgg
      841 ttgttaggtc aacagtcgtc gtcagtaccg tatcagggaa aatcaagttg acatctgcaa
      901 tttgatttat tttcgccagc aagtccatat caatattcat agctgaggcg atggcagata
      961 aggtatctcc atactgaaca gtataggtca tctttccttc ttcttgtaca atttctgggc
     1021 taatttcaga aacagtacgt ggagcccatt cgatggctaa aacatttgtc gaaatcatcc
     1081 ctgtactaaa gagggaaaga gccaatgaag atgtgtataa catcttctta ttgtttttca
     1141 tgatgggtgt ttttctcttg cgacgcatat gttgtggttt atttgttctc ttacgtttca
     1201 taatcttatt ccttctttat ttttgagatg gttctatctt acctaaatta aatctgaaaa
     1261 acaagccttc aacctttctt ttaaataaac tgtctccact atgtaatctt aggacttttc
     1321 tgtcacacaa tcaatataaa tgtcatctga ctgtcatatt attagataat actcaatgaa
     1381 aatcaaaaac agactcggag atgcagatag aactaacgtt caccaaatca agtcaacaac
     1441 gtctggattt tcgaagacta taattaaaaa ataagagtaa ggcagtaatc caacaattgg
     1501 ctactagctc actctcattt ctattttcgg attagtcaag atcctacatt tcttcaggat
     1561 aaaccaagcc ccattcttta cggagttggg tcataatctc cataacatct tgggtaaatg
     1621 ctaggtgcat ggtgttttcg atgcctgcga cagctttttc catatccgcc acttcataag
     1681 aaagggccct ggctgtctcg cccgcttcga ttacctcttg gctaccgtct tcagtatagg
     1741 taatgactgc tttctgacca cgtgggtact cgtaaagctc gatgtagcct ttatcgtagg
     1801 caatagtgcc ccgttttggc tgtttggcat ggagggtcag ggcggtggtc gccatttctc
     1861 ctgcatcatt gctgagcaaa atccctacct gctcatccac acctgtcgga gccaatttga
     1921 cctgagacaa gacctggcta ggcttttccg tcataaacca acggacaaag gacagagcgt
     1981 agacaccaat atccaagagg gcaccgccgg ccaagttctt attgaaaaag cggttggtca
     2041 tgtcgtattc cttgtagctg ccaaagttca tctgaatcat cttcaaatct cccagcttgc
     2101 cactggcaac cacttcgctc aactgacgat agattggcat gtggaaaatg gtcatggctt
     2161 ctgccaggat aacctgattt tcttctgcca gttgaatggc ttctgctaat tcttctgaat
     2221 taagcgtaat agacttttca cagaggacat gctttccagc cttcaaagct tttctcaaat
     2281 aattgatatg ggtattgtga ggcgtagaaa tatagataat gtctacttca ggatcctcaa
     2341 acacttcatc gatttctcga taaactttct cgatgccata tttttgcgca aattccacac
     2401 ccttgtcata ggtacggttg gctaccgaat aaagatttcc tcccatatcc tgcaaggcct
     2461 gaaccaattc gttggcaatg acacctgttc ccagagtcgc ccatttatac ttcatttgca
     2521 cttccatagt gtacctcact ttcttctacc attatagtaa attccaccct tttctgcaca
     2581 ctctaactag catttgtgtt acaataagaa catgaatacc gttgtactaa aggcctctgc
     2641 ccagcaaaaa caagccatga tggctcacta tgaccgctat cggcagacca gcaaaaatcc
     2701 ttacatagaa gcatttttca aactgaccgg tgccagcctg tccatctaca cttctggaaa
     2761 agtcgttttt cagggggaaa tggcagagca ggaagcaggg gtctggggct atgagccaga
     2821 aagctctgga cagacgacca tacctggtca aaacctgccc atgattggta ccgatgaggt
     2881 tggaaacggg tcttattttg gaggtttggc agtcgttgct agttttgtcc gcccagaaga
     2941 ccatgccttt ctcaagtcgc ttggtgtgga tgattctaag aaaatgacag accaaaaaat
     3001 ctgccaaatc gctcctctct taaaagagaa aatcccccac caagctctgc tattgtcacc
     3061 gaaaaaatac aacgaagtca tcgagcaagg ctacaatgcg gtgtctgtca aggtggccct
     3121 acacaatcag gctattttcc tactcttgca aaagggtgtc cagcctgaga agattgtcat
     3181 tgatgccttc acttccagtc aaaattatca aaagtacttg aagaaggaag ccaaccaatt
     3241 tgccaacccc gtcactctag aagaaaaggc tgagggcaag tatctggctg tggcagtatc
     3301 ttctatcatt gctagagcta tgtttttaga aaatcttgtc cagcttggtc aactagttgg
     3361 gatgaatctg ccgtctggtg cgggcagtaa atccgaccaa gtcgcagcaa gcatcttaaa
     3421 acaatatggt atggctggtc tcaaccaaac tgccaaactc cactttgcca atacgcaaaa
     3481 agcacaaaaa ttattgaaat gaggaaaaaa tatgggagca atccaaaaaa caaaacgctc
     3541 accactagtc gccttcttag ctgaatgggg catcttttta ctgtttatgg cagctttttt
     3601 tgccagtcga tactttatct ggaatcctgt ctctgtcgat ggccattcca tggacccaac
     3661 gcttcaacac caagaaaaac tcatcatgct aaaaacgacc tctatcgacc gctttgatat
     3721 tgttgtagcc agtgagacag acagcgacgg caaggaaaaa ctgattgtca aacgtgtgat
     3781 tggtatgcca ggtgacacca ttcgctacga aaacgatgtc ctctatgtta acgaccaaaa
     3841 agtggacgag ccttacttag atgaatatct agctgcattc cagaaagata aacttcaaga
     3901 agtctattct tacaacaaac aattccaagc tgtggcccaa tctgctgaag ctttcacaca
     3961 agatgccaat ggttacgtag actttaccgt gacagtacca gaaggacaat actacctgat
     4021 gggagatgac cgccttgtct cactagatag tcgtagtgta ggaacatttt cccgtgaaaa
     4081 catcaaagga gaagttgtct ttcgcatgtg gcctctcaac cgtattggga ctgttgatta
     4141 atacaaacaa gtttggagca atccgttcca aacttctttt tcattattat tggaactaaa
     4201 ctctatgaac gaagtgtatt ttaccggcac tattgaccgg attatttttg aaaatcctag
     4261 taatttttat aaaatccttc tccttgaaat cgaggagaca gacgcagact atgatgacta
     4321 cgaaattatt gtgaccggaa cgattgccga tgtcattgaa ggagaagact atcgtttcta
     4381 tggcaatctg gtcacccatc ccaagtatgg tcagcagctg caaatttcgc gttacgaacg
     4441 cagcaagcct acctcagctg gtctggtcaa gtatttctcc agcgagcatt tcaagggaat
     4501 tggacgcaaa acagctgaaa aaatcgttga gctctatggc gaagatacca ttgataagat
     4561 tttagctgaa cctgaaaaac taacccaaat cacaggccta tccagcaaga acatgcaggc
     4621 atttgtcgaa aaactccgcc tcaattatgg aaccgagttg atcttggcaa aactagccga
     4681 gtatggcatt cccaataaat tggcctttca aatccaagac cagtataagg aaaaaacact
     4741 tcagattatt gaagaaaatc cctatcaact ggtcgaagat gtccaggggc tcggctttac
     4801 cattgccgat aggattgcgg aaaatctagg aattgccagt gattcacccc aacgttttcg
     4861 ggctggcatg ctctttagtc tcattcatcg ctccatggaa acaggcgata cctatgtgga
     4921 ggccagagac ttgctggaag caacccttga actgctggaa aaatcccgcc atacagagct
     4981 ggaccccgct gctgttgcca aagaattgac gggactgatt gcagacgaca aggtacagca
     5041 agaaggcaca aagatttttg acaacagcct ctactttgcc gaacatggta tccatacaaa
     5101 cctaactcgc ctgatgggaa aaaacggctt caagcccttc ccacgcgcag acgtcgaggc
     5161 tgccatagca gagctggaaa gcatatcttc tctcacctac gataacattc aaaaagaagc
     5221 cattgtccaa gccattacca atccgctttt cattctgaca ggcgggccag ggactggaaa
     5281 gacaaccgtt atcaacggta ttatcgcggt ctatgccatc ttgcataaga ttgacctgac
     5341 tcgcaaccga gaagaatgcc cagtcctcct agccgctcca actggacgag cagccagacg
     5401 gatgaatgaa ttgacagggc tgccttccgc caccatccac cgccatctcg gtctggtaga
     5461 aggacaggag gaatcctacc gtgatgatta tttggatgcc gactttatca tcgtggatga
     5521 gttttctatg gtagatactt ggttggcaaa ccagctcttc cagaatatct cctcccagac
     5581 ccaagttctg attgtcggcg atgccgagca attgccttct gtcagccccg gtcaagtact
     5641 tgctgacctc ttgaaaattg acaagctgcc cagcattact ctagaacgta tctatcgtca
     5701 atccgatgat tcgaccattg ttaccctagc cagccagatt cgacagggtg ctctgcctag
     5761 cgattttcgt gagaaaaagg ctgaccgttc ctattttgaa gcccagaatg aacaaattcc
     5821 agccctgatt gagcgcattg tcggcgcagc catcaagtca ggtattcctg caaacgaggt
     5881 acagatcctc gctcccatgt accgtggggc cgcaggcatc gaccaactca acactatgac
     5941 ccaggccctg ctcaatccac tggaagaggg agagttagaa ttcctgcata acgagcaagc
     6001 cttccgccaa ggcgaccggg tcattcattt agtcaacgat gccgaggcca atgtcttcaa
     6061 tggtgattta ggctacatca ccgacctcct tcctgccaag tacaccgact ccaagcagga
     6121 cgaaattacc atcaacttcg acggtagcga ggtcacctat ccccgaaacg aatggtacaa
     6181 gattaccctg gcctatgcca tgtccatcca caagtcccaa ggcagcgagt ttcaggtagt
     6241 catcctcccc atcacccgca ccagccaccg tatgctccag cgcaatctgg tctacaccgc
     6301 catcacccgc tccaagagca agctcatcct cctaggcgaa atctccgcct tcgactacgc
     6361 cgtcaaaaac gccggcaccg tccgaaaaac ctatctggtc ccacgtttcc aaggggaaat
     6421 ggcagagcag gaaagcaagg aaagcctgat taaaaaagac gaaagcaaaa cagctacaac
     6481 cacgcaaacc cagcccccta ctcagccaga cagaaaagaa caggttaaag tagtcaaaga
     6541 aaacaaccaa caactctccc ttcttgatca agaccagcca aaaaaaacaa gtccccaacc
     6601 cacagaatac attttgactg tagacaacct actaaccatc gaccccatga ttggcataga
     6661 acaggcagat attgaagaat tttttaaagc ataaaaacca gcaagtcagt agatgaacac
     6721 cgttatattc ttttatttga cagcctctaa agctgcttta taatctgggt gttcgttgac
     6781 attgtctagg tattctacgt agacgatctc attgtcggca ttaaggacaa agaccgcacg
     6841 cgccagcaaa ttccactccc gcatgagcac accgtaggat tttccaaagg catggtcata
     6901 gtcccctacc atggcaactg tcttgccctg ttcttgtaag aacttgactt ggttggcctt
     6961 gtcatctggc aggacctgac tgaccacctg ctcaatgccg acttccttgg caatagcctg
     7021 ggcagttttt tcattatctc ctgtcagcat gacaacctct agttccatgg tttgcagagc
     7081 ctg
//
LOCUS       DASFRC010000112         7080 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.112, whole genome shotgun sequence.
ACCESSION   DASFRC010000112 DASFRC010000000
VERSION     DASFRC010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7080)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7080)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7080
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.112"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            76..348
                     /locus_tag="U1087_001600"
     CDS             76..348
                     /locus_tag="U1087_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlbG family protein"
                     /protein_id="HEM4756063.1"
                     /translation="MFEKKNRTCLTVYLHYNRDARKLSQYGDIVYHSKRLRYVFVYMD
                     QELVEATILKLKKERFVKKVVPSYIKELDQNFVGNLWRDEEPSVVG"
     gene            479..1648
                     /locus_tag="U1087_001601"
     CDS             479..1648
                     /locus_tag="U1087_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM4756064.1"
                     /translation="MKTRKFAVALATFASAALLAACGNVSTTNTSAAGSSVGDTFKIG
                     YNLELSGAVSSYGQTEEKGANLAVKEINAAGGIDGKKIEVITKDNKSETAEAATVATS
                     LASEGANVVIGPATSGASAASIPALTSAGVPMITPSGTQTNLVVNDKGEVQEYFFRTT
                     FTDGYQGQIMAKYATENLSAKKVVLYFDNSSDYGKGVAEAFKKAYTGEIVSEITFASG
                     DKDFQAALTKLKDKEFDAIIMPGYYNETGTIVKQARGLGIDKPILGSDGFDSPQFTEL
                     ATASAASNVYYLSGFVTSASEKAKAFYDAYVKEYNEEPSMFSALAYDSVYMAAEAAKG
                     AADSAAVKANLAALKDFKGVTGTMSVDKEHNVIKSVYVVSLTNGEESSVDTISID"
     gene            1854..2741
                     /locus_tag="U1087_001602"
     CDS             1854..2741
                     /locus_tag="U1087_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002897070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEM4756065.1"
                     /translation="MLQQLVNGLILGSVYALLALGYTMVYGIIKLINFAHGDLYMMGA
                     FMGYFLLNNLNFIADGGTRFFVALILAMVGTAILGVVIEFLAYRPLRNSTRIAALITA
                     IGVSFFLEYTMIKFFTADVKAFPQAIEAVTFNLGPVSVTNIQLIILGVSLALMVALQL
                     IVKRTKMGKAMRAVSVDSDAAQLMGINVNRTISFTFALGSALAGAAGVLLGLYYNQIE
                     PLMGMTPGLKAFVAAVLGGIGIIPGAALGGFVIGIIETFTYVIEFDTFRDAIVYTVLI
                     IILLVRPSGILGKNVKEKV"
     gene            2744..3691
                     /locus_tag="U1087_001603"
     CDS             2744..3691
                     /locus_tag="U1087_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002914606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEM4756066.1"
                     /translation="MKQNLKVNAIWLAILLAGFGLIQGLVSAGILNFYYIQIVQQIGI
                     QIILAVGLNLIVGFSGQFSLGHAGFMAIGAYAVGILGKMMPTYGGFAIALIVGMLISG
                     AVALLVGIPTLRLKGDYLAIATLGVAEIIRILIINGGSVTNGAAGIMSIPLFTSWPLV
                     YIFVIITTLVTVNFLCSPMGRATISVREDEIAAESVGVNPTFVKVSAFVFGAMTAAIA
                     GGLHAGYVGTIVPKDFAFMTSVNVLIIIVLGGLGSITGTFVAAIVLGILNVFLKSYSD
                     ISMIIYSLALILLMIFRPGGLLGTKEFSVAALLKKKEVK"
     gene            3691..4455
                     /locus_tag="U1087_001604"
     CDS             3691..4455
                     /locus_tag="U1087_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002913097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4756067.1"
                     /translation="MALLEVKDLTKNFGGLTAVGDVTMELHEGELVGLIGPNGAGKTT
                     LFNLLTGVYEPSEGTISLAGTILNGKAPSKIASLGLGRTFQNIRLFKNMTVLENVLIG
                     LGNHGKSEVFASFFRLPAFYKNEEALKTKAIELLKIFYLDGDADTLAKNLPYGQQRRL
                     EIVRALATEPKILFLDEPAAGMNPQETAELTQLIRKIKEEFGITIILIEHDMSLVMEV
                     TERIYVLEYGRLIAHGTPEEIRNNKRVIEAYLGGEA"
     gene            4455..5165
                     /locus_tag="U1087_001605"
     CDS             4455..5165
                     /locus_tag="U1087_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000062217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4756068.1"
                     /translation="MAMLEVKNLSVNYGVIEAVKDVSFEVNEGEVVTLIGANGAGKTS
                     ILRTISGLVRPSAGTISFLGNEIQKVPARKIVADGLSQVPEGRHVFAGLTVMENLEMG
                     AFLRNNREENQANLKKIFARFPRLEERKNQDAATLSGGEQQMLAMGRALMSQPKLLLL
                     DEPSMGLAPIFIQEIFDIIQDIQKQGTTVLLIEQNANKALAIADRGYVLETGKVVLSG
                     TGKELLASEEVKKAYLGG"
     gene            5340..6075
                     /locus_tag="U1087_001606"
                     /pseudo
     CDS             5340..6075
                     /locus_tag="U1087_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775267.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
     gene            6183..6773
                     /locus_tag="U1087_001607"
     CDS             6183..6773
                     /locus_tag="U1087_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015445299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756069.1"
                     /translation="MKLRKVSFILVTFVIGLLSLSSVKAETSMFVPVGQQNVPGVEVA
                     PFRTGSDSIHVHVGSFGYVATYINGERLKVEPVKHELKCPSYTTENCQTKEWYTSGER
                     ADGSGDYVVKLNKKLEEGDVVTLKFADDGNLYFGQLVYKSEKKRVEQTQKEQEDEYAD
                     ALFKRSIEEEENKTWRDRIKDTFQDAWWNFKGWWNS"
     gene            6923..>7080
                     /locus_tag="U1087_001608"
     CDS             6923..>7080
                     /locus_tag="U1087_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HEM4756070.1"
                     /translation="MTVIEQIEQLKKEKLELLTVLCGEDIGQYQIAKDLLLRKLDFDA
                     ADLGFAYF"
BASE COUNT         2058 a         1218 c         1598 g         2206 t
ORIGIN      
        1 ttacaggtag ttggagcttt tcatttatca ttgaaaacgg tataatatag aaagagaatt
       61 tttagaggag aagacatgtt tgagaagaaa aatcgcactt gcttaactgt ctatttacac
      121 tacaatcgtg atgcacgtaa actcagccaa tatggagata ttgtttacca ttccaaacgc
      181 ttgcgatatg tttttgtgta tatggatcaa gaactagtag aagctaccat attaaaattg
      241 aaaaaggaac gttttgtaaa aaaagtggtt ccttcataca ttaaggaatt agaccaaaac
      301 tttgtaggta atctatggag agatgaagaa ccatcagtcg taggatagtc ggaattagca
      361 ggtatgtatt ccctgctaat tttttatttt aaaatttttt tcttttttgt tgacaatttt
      421 cagataattc agtatattag atacatcgta aaatttaaga aagatttaag gagttttcat
      481 gaaaacaaga aaatttgcag tagcgcttgc tacatttgcc tctgcagctc tactcgctgc
      541 atgtggtaat gtttcgacaa ccaatacttc agccgcaggt tcttctgtag gtgatacgtt
      601 taaaattggc tacaacttgg agttgtcagg tgctgtttca tcttatggtc aaacagagga
      661 aaaaggtgcc aaccttgccg tgaaagaaat caatgctgcg ggtggtattg acggcaaaaa
      721 aatcgaagtg atcacaaaag acaacaagtc tgaaacagca gaggcagcta ctgttgcaac
      781 aagcttggca agtgaagggg caaacgttgt gattggtcct gctacatcag gagcttcagc
      841 agcctctatt ccagcattga catctgctgg tgttcctatg attactcctt caggaactca
      901 aacaaacttg gttgtgaacg ataaaggtga ggtccaagaa tacttcttcc gtacaacctt
      961 tacagatggg tatcaaggtc aaattatggc taaatacgct actgagaacc tgtcagctaa
     1021 gaaagttgtt ctttactttg acaactcttc tgattatggt aagggtgtag cagaggcgtt
     1081 caagaaagca tacacaggag aaatcgtttc agaaatcaca tttgcttctg gcgataaaga
     1141 tttccaagct gctttgacaa aattgaaaga taaggaattt gatgcaatca tcatgcctgg
     1201 ttactacaat gaaacaggta caattgtgaa gcaagcacgc ggtttgggta ttgacaagcc
     1261 aattcttggt tcagatggtt ttgactcacc acaatttact gaattggcaa ctgcatcagc
     1321 agcatcaaat gtttactacc tttctggatt tgtaacatca gcaagcgaaa aagcaaaagc
     1381 attctatgat gcctatgtga aagaatacaa tgaagagcca tcaatgttct cagctttagc
     1441 ttacgactcg gtttacatgg cagcagaagc agcaaaaggt gcagctgatt cagcagcagt
     1501 gaaggctaat cttgcagctc tgaaagactt taaaggtgtg actggtacaa tgtctgttga
     1561 caaagagcac aatgtcatta aatcagttta tgttgttagt ttaacaaacg gagaagaatc
     1621 atctgtagat actatctcta ttgactaata gtggatgaaa agagggaatt ccctcttttt
     1681 cacttgtcag aatgtataga atagtataca tgcggatata aaatttgggt tggttaaatt
     1741 ttctgtaatt ttaatgatta aactctctgt ctaacttgct tattttcaga aaattttgta
     1801 taatgtaaca atgctattga gctcgaaaaa tatttagaaa gattggtgaa cctatgcttc
     1861 aacaacttgt caatggtttg attcttggtt ctgtttatgc ccttttggcc cttggttata
     1921 ccatggtgta cggaattatc aaactcatta acttcgccca tggtgatttg tatatgatgg
     1981 gtgcttttat ggggtacttc ctattaaata atttaaattt tattgcagat ggtggaacgc
     2041 gtttctttgt tgctctcatt ctagcgatgg tagggacggc tattctcggt gtagttatag
     2101 agtttttagc ctatcgtcct ttgcgtaatt caacgcgtat agcagctttg attacggcta
     2161 tcggtgtatc cttcttctta gaatacacta tgattaaatt ctttacagca gacgtaaaag
     2221 cctttccaca agcaatcgaa gctgtgactt ttaaccttgg tccagtttct gttacgaata
     2281 tccagttgat tattcttggt gtatcgcttg cgttgatggt tgcacttcaa ttaattgtca
     2341 aacgtacaaa aatggggaaa gccatgcgtg cggtctctgt agatagcgat gcagctcagc
     2401 ttatggggat caatgtaaac cgtacaatca gctttacttt tgctcttggg tcggctcttg
     2461 cgggtgctgc gggtgttctc ctaggtctct actacaacca gattgagcct ttgatgggga
     2521 tgaccccagg tttgaaagcc tttgtagcgg cagtattggg cggtatcggt attattccag
     2581 gtgctgcgct tggtggcttc gttatcggta tcatcgaaac attcacctat gtgattgaat
     2641 tcgatacttt ccgcgatgcg atcgtatata ctgttttgat catcatcctc ttggtgcgtc
     2701 caagtggtat tcttggtaaa aatgtgaaag agaaggtgta accatgaagc aaaatttaaa
     2761 agttaatgcg atttggttgg ctatcttatt ggctggtttt ggacttattc aaggtcttgt
     2821 atcagcaggg attctgaatt tttactacat ccagattgtt cagcaaatcg gtattcaaat
     2881 tatcttggca gttggtttaa acttgattgt tggtttctca ggtcaatttt cacttggtca
     2941 tgctggtttt atggctattg gtgcttatgc agtaggtatc cttgggaaaa tgatgccaac
     3001 ttatggtgga tttgctatcg ccttgattgt tgggatgtta atctcaggtg cagtagctct
     3061 tttagtcggt attccaaccc ttcgtttgaa aggtgactac cttgcaattg cgactctcgg
     3121 tgttgcagag attattcgta ttttaattat caatggtggt agtgtaacga atggtgcagc
     3181 aggtattatg tctattccac tctttacaag ctggccttta gtttatattt ttgtaatcat
     3241 cacaaccttg gtgacagtta acttcctatg tagtccaatg ggacgtgcta caatttctgt
     3301 tcgtgaggat gaaattgcgg cagaatctgt aggtgtcaat ccaacatttg ttaaagtttc
     3361 agcctttgta tttggtgcta tgacggcagc cattgcaggt ggtctccatg caggatacgt
     3421 tgggacaatt gttccgaaag actttgcctt tatgacctcc gttaacgttt tgattatcat
     3481 cgtattgggt ggtttgggct ctatcacagg tacctttgta gcagccattg tacttggtat
     3541 tttgaacgta ttcctcaaga gttactctga tatttcaatg attatctatt cattagctct
     3601 tattctcttg atgattttcc gtcctggagg tcttttggga acgaaggaat tcagcgtagc
     3661 agctctactc aagaagaagg aggttaagta atggcattac ttgaagtaaa agatttaacc
     3721 aagaacttcg gtggcctgac tgccgttggt gacgtgacca tggaacttca tgaaggagaa
     3781 ttggttggtc ttatcggtcc aaatggtgct ggtaaaacga ctcttttcaa cctcttaaca
     3841 ggtgtttatg agccaagcga ggggacaatt tctcttgcag ggactatttt gaacggtaaa
     3901 gcaccatcaa aaattgcttc gcttggtcta ggtcgtactt tccagaacat tcgtttgttc
     3961 aaaaatatga ccgttttgga aaatgttttg attggtcttg gcaaccatgg taaatcagaa
     4021 gtatttgcaa gtttcttccg tcttccagca ttctataaga atgaagaagc gttgaaaaca
     4081 aaagcgattg aacttttgaa aatcttctat ttggatggag atgcagatac attagctaaa
     4141 aaccttcctt acggtcaaca acgacgtttg gaaatcgttc gtgcccttgc gactgaaccc
     4201 aaaattcttt tcttggatga gccagcggct ggtatgaacc cacaagaaac ggcagaattg
     4261 acccaactca tccgtaaaat caaagaagaa tttggcatta ctatcatctt gatcgaacac
     4321 gatatgagct tggttatgga agtaacggag cggatatacg tattggagta cggtcgtttg
     4381 attgcccatg gtacaccaga agaaattcgt aataacaagc gtgtaattga agcctacctt
     4441 ggaggtgaag cttaatggca atgttagaag taaaaaatct ttccgttaac tacggtgtta
     4501 tcgaagctgt taaagatgtt agctttgagg ttaatgaagg tgaagttgta acacttatcg
     4561 gcgctaatgg tgctggtaaa acctctatcc ttcgtactat ttcaggactt gttcgtccat
     4621 cagctggaac gatttctttc cttggaaatg agattcaaaa agttcctgct cgtaaaatcg
     4681 ttgcggacgg tttgtcgcaa gttccagaag gtcgacatgt ctttgcaggc ttgactgtta
     4741 tggaaaactt ggaaatgggt gccttccttc gcaacaatcg tgaagaaaac caagcaaact
     4801 tgaaaaaaat ctttgctcgt tttccacgtt tggaagaacg taaaaaccag gatgcagcta
     4861 ccctttcagg tggggagcaa cagatgttgg ccatgggacg tgccctaatg agccaaccaa
     4921 aactcttgct ccttgatgaa ccatcaatgg gcttggctcc gatctttatc caagaaattt
     4981 ttgatatcat ccaagatatt caaaaacaag gaacaactgt cctcttgatt gagcaaaatg
     5041 ccaacaaagc tctcgctatt gcagatcgtg gctatgttct agaaacagga aaagttgtcc
     5101 tctcaggaac aggaaaagaa ctcctcgcct cagaagaagt caaaaaagca tatctgggtg
     5161 gctaaaaagg tctgggggac ctttttaggt tggaaatgag aaccgctggt aagcggtttt
     5221 ctttatatca aggtctgggg gaccttttta ggtggaaata gggagtgttc tctcatgtta
     5281 ttgctatcta tgcagtggtc ttcaaatata gtataatgaa tgtatatttg gaggtttgta
     5341 tgattaaagt tgaagagatt ttatcgactc tatcaccgaa tcaaaaggtt aactatgata
     5401 aagtgtttca aaaaatggca agcacgtggc aggaagctgg gcttcgaccg aaaattctca
     5461 tgcatgtctg ttgtgcccca tgctcgacct atacattgga gtacttgact caatatgcag
     5521 atgtaaccat ctattttgcg aattccaata ttcatccaaa ggcggaatac cagcggcggg
     5581 cagccgtgac ggcccagttt gtcaaagaat ttaatcagaa aactggacag tcggtaggct
     5641 atctagaagc tgactatagc cctcaggaat ttttcaagaa aactcagcat cttgccaatg
     5701 agccagaggg aggagatcgg tgtaaggttt gctatgatta tcggttggat aagactgcgg
     5761 agaaggcagt tgagcttggc tttgacaatc agtccacata agaattcgca gaccatcaat
     5821 gctgctggga ttgaggtgca gaaattatac ggtacccagt atcttccgag tgactttaag
     5881 aaaaatggag gctatcagcg ttcagttcaa atgtgtgaag agtatgacat ttatcgccag
     5941 tgctattgtg gctgtgtcta tggggccaat gcccaaggtg tcaatctcgt acaggtaaaa
     6001 aaagaagcct tggaattttt aaaaacgcac agagattatt cccacattcc tttcaaggtg
     6061 ttggataaga attgagtttt tgagtttagt ttttacttaa ggagcgtttt ttcttgcttt
     6121 ctctatgaaa ttggtatata ctaattccgg ttaatatatt gtactactag gagaaaagca
     6181 aaatgaaatt gagaaaagta tcgtttattt tagttacctt tgtcatcggt ttactatcgt
     6241 tatcaagtgt aaaggcggag acttcgatgt ttgtaccagt aggtcaacag aatgttccgg
     6301 gggtagaagt agctcctttt agaactggtt cagactctat ccatgtccat gttggttcat
     6361 ttggttatgt tgctacatat ataaatggag aacgattgaa ggtcgagcct gtaaagcatg
     6421 aactcaagtg tccgagttat actacagaga attgccaaac taaagagtgg tatacaagtg
     6481 gggaacgtgc ggacggcagt ggagattatg ttgtaaaatt gaataagaaa ctcgaagaag
     6541 gtgatgttgt tacattaaaa tttgcagacg atgggaattt gtattttggt caattagtat
     6601 ataaaagtga aaagaagcga gttgaacaga ctcaaaagga acaagaggat gagtacgcag
     6661 atgccttgtt caaacgttct attgaggaag aagaaaataa gacttggaga gatcggataa
     6721 aggatacttt tcaagatgct tggtggaatt tcaaagggtg gtggaatagc taacaaagga
     6781 actgctattt ggaaaatagg tcatttggag tgattatcaa ttaatttttt ctaccttcct
     6841 gatataaatt tcaatgaaag agtccagact ttatgtctag gctctttttg tggtacaatg
     6901 agaaaagaat tttgaggttt ttatgacagt tattgaacag attgaacaat taaaaaaaga
     6961 gaaattagag cttctgaccg ttttatgcgg tgaagacatc ggacaatacc aaatagcgaa
     7021 agacttactt ctgcggaagc ttgattttga tgcggcagat ttaggttttg cctattttga
//
LOCUS       DASFRC010000113         7056 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.113, whole genome shotgun sequence.
ACCESSION   DASFRC010000113 DASFRC010000000
VERSION     DASFRC010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7056)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7056)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7056
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.113"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            111..452
                     /locus_tag="U1087_001609"
                     /pseudo
     CDS             111..452
                     /locus_tag="U1087_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028534.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase"
     gene            528..788
                     /locus_tag="U1087_001610"
     CDS             528..788
                     /locus_tag="U1087_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HEM4756071.1"
                     /translation="MEAIVYSHFRNHLKDYMKKVNDEFEPLVVVNKNPEEDIVVLSKS
                     EWDSLQETLAVARNTYLSQKVLRGMAKVKTGQTQERNLIEAD"
     gene            790..1047
                     /locus_tag="U1087_001611"
     CDS             790..1047
                     /locus_tag="U1087_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Txe/YoeB family addiction module toxin"
                     /protein_id="HEM4756072.1"
                     /translation="MGIHFTDDAWEDYLYWQGQDKKTLKRINKIIKDMQRHPFEGIAK
                     PEPLKYDYQGAWSRRIDAENRLIYMVEADRLCILSLKDHYR"
     gene            1061..1591
                     /locus_tag="U1087_001612"
     CDS             1061..1591
                     /locus_tag="U1087_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1697 domain-containing protein"
                     /protein_id="HEM4756073.1"
                     /translation="MKKVVLLRGVTPVGKNKIPKMSYLAEILTEAGLTSVQTYIQSGN
                     VVCETDILDEELSRLIHQTIKEKIGAELAIIVKHQMELTQAVAENSFGEGYDPSRVHL
                     VFTNDEINGEKLNKLLHQDFGDEELRLGSQCLYMYLPRDARKKKLNTNYLEKQLDITA
                     TMRKLSVISRLSEMAK"
     gene            1575..2483
                     /gene="rsmA"
                     /locus_tag="U1087_001613"
     CDS             1575..2483
                     /gene="rsmA"
                     /locus_tag="U1087_001613"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HEM4756074.1"
                     /translation="MKWRNKKQERTHMRIADKNVTRAVLERHGFTFKKSFGQNFLTDT
                     NILQKIVNTAEIDQNVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRLIPILADTLGR
                     FDNVTVVNQDILKTDLQTQIQNFKNPDLPIKVVANLPYYITTPILMHLIESKIPFSEF
                     VVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM
                     VRREQPLVSVKDEDFFFRVSKASFVHRRKTLWNNLTNHFGKSDEVKDKLTRALGMAEL
                     EASVRGEALSMADFARLSDSLQEVGL"
     gene            2846..4576
                     /locus_tag="U1087_001614"
     CDS             2846..4576
                     /locus_tag="U1087_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756075.1"
                     /translation="MLKKLLKKHPDIVAVTVFFLFSLTLLLPQILSKAVVTGDDIVFH
                     YNRFYDTAMQIKSGDFSYIMSLHGYQQSGRIVNALYGPYLAYLQGALLLLAGTWYRYQ
                     LLSNLLLGVLSATSLYFLMREVKVRYSLSVGLSMFFVTTYSVQYWWVAQGFSSWGVAL
                     FPLCLIPAVRFLKTGKVPIFLMAGAVGLMLQIHMLSALFLILAYAILFSIGWLKSQDK
                     WNVMKDVLFSVGVFLILTVNIWLPLLYVNATNELAAPFINKKFIQSTVTWSKAYFLYF
                     PYSLPIIFATFLYFMLKKWKKQSVILRGLTVTFLVFFIFSTNLFPWQLFAGKGIGLVD
                     LIQFPFRFFLYANALLLTIVGLQLTDYEVRKKLFLGLTILSTIIGVGFTWDQYNQAVN
                     DQYNKAEFLQDMLHTTLYGTTEELRASLHSKNLGEFVQLVQKSTPDYVPVLSEKEENV
                     RAVNEAKSRYDRYRDQIILPNQQFNKQVFGDSLKISWSANQSEEIQIPIVIYRDSELT
                     LNGKRLGKMDYYLSTIGVPTVTSQKGKNTLILSYKQQWWLLPVIFISLTGWILWSIYY
                     TFIYRKSNIS"
     gene            4589..7033
                     /locus_tag="U1087_001615"
     CDS             4589..7033
                     /locus_tag="U1087_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HEM4756076.1"
                     /translation="MKQIKLKATKQFILVMVMTVLLAMGRALLLSDVSFPLWFIPLPL
                     IAYLIFTFYVLVLLDKYEKFIKTKTFAKYVSYFLGFLYLVNLVYRLNAKKYQPWNIFR
                     NNLFQFELLLMLALPVLLAFLWRKKTGIREKLSQWSANHLVPDGYLLLTSLLSLSPLA
                     ISYWKDSHYESLVEKGSYIEFFSQTPLFAPIHFIGTYIFLRYLHKAFVEFKANRTNVH
                     SMLFISLALATLSHIGYQASMAGGTGSYFTRHLFPGVIIFQIACLLFLNIIISLVINR
                     QILSVAVIAGLNVTLIAANFLKFRYRSEPLTPNDFKWVGNLGMILSFISLRVVLVSLV
                     FIVLLVFIYRRIHKKYFQGKIVASIWKRLAGVSVIVSLILGMGWAIRNEKDHKIAGWI
                     PILSQVNNWRNVDWKGYAFVARYRTLSFLWLQQLSKTSMEMPENYSEKTMKAIVKKYT
                     ALAEEINAERTGQLTDQTVIYILSESLADPRRIPGVTLSQNVLPNIEYIMSQTTSGLM
                     KSDHYGGGTANIEFQVYSGLPFYNYSSSISSVYLDVAPNMKKLPSISDLYPADNRIAI
                     HPYYDTSYNRNSIYKQLGIEQFYTLNSAKYPLTVTAEDYQGNFVSDKKTYDLILEQVR
                     SGTNTFVSAITMQNHVQWNSAEPASITASGESFTAEENENLNSYVRLLSFTDQATRDF
                     LDQLKTLDKKVTVVFYGDHLPGLYPESAFVTDPSAQYKTDYFVWSNFETEDYHYDLVN
                     SSDMNALMLETTNNKVSPYYALLTEVLHKDRVGQAERDAKVAEELKLVQYDLSTGKGY
                     LLKYKDFFKVATETTE"
BASE COUNT         1999 a         1382 c         1538 g         2137 t
ORIGIN      
        1 gttgaagagg agacttgaat cgtatcaagt ctctttcttg ataggttgat ttgtgataca
       61 attagtgtga aatctagtaa ataaatagtg tcagttactt gacataagag ggccatgttg
      121 agcacgggga gagtattgtc tcctctgtcg tccgcgaggt caaagaagaa acaggcttga
      181 cggtatccaa tctcgaactc tgtggcattc aaaactggac ggatccgact gaccactatc
      241 gttatctggt attttgctat aaaactagtc atttttcagg ttctattcaa tcttcagatg
      301 agggggaggt cttctggagt gaccgtgcag aattgaagaa tgttcaactg gctgacggct
      361 ttgaaaccat gctggaaatc tttgaacagc cacagctgac ggagaatttt tactggtttg
      421 aagacggcga gtggaaggtg gagaatcgct aaagagttgt acaataagtt tgacaactct
      481 ttttttctgt gctatagtaa gcctagaaat gatgagaggt attgcttatg gaagctattg
      541 tatattccca ttttcgaaat cacttaaagg actatatgaa aaaggtcaat gacgagtttg
      601 aacctttggt cgtggttaat aaaaatccag aggaagatat tgttgtactc tcaaagagtg
      661 agtgggatag tttacaagaa accctcgctg ttgctcggaa cacttatctg tctcaaaaag
      721 tcctacgtgg tatggctaaa gtcaaaacgg gacaaaccca agaacgaaac ctgatagagg
      781 cggactaaca tgggaatcca ttttacagac gacgcctggg aagactatct ttattggcag
      841 ggtcaggata agaaaacact gaagagaatc aataagatta tcaaggatat gcagcgacat
      901 ccttttgaag gcattgccaa accagaacct ttgaagtatg attatcaagg tgcctggtct
      961 cggagaattg atgcggagaa tcggttgatt tatatggtgg aagctgatcg gttgtgcatc
     1021 ctgtcgctaa aggatcatta taggtgaggg ggattaacaa atgaaaaaag tcgtcctcct
     1081 tcgaggtgtt acccctgttg gcaagaataa aattcccaag atgtcttact tggcggaaat
     1141 tttgacggaa gctggtttaa cttctgtcca aacctatatt caaagcggaa atgttgtttg
     1201 tgaaacagat atattagatg aagaactcag tcggcttatc catcaaacca ttaaagaaaa
     1261 aataggtgca gagttagcga tcattgtcaa acatcagatg gagttaacac aagcagttgc
     1321 tgaaaattct tttggtgagg gctatgatcc ttctcgtgtt catttggtct ttaccaatga
     1381 tgagataaat ggtgaaaaat taaacaaatt attgcaccaa gactttggcg atgaggagtt
     1441 gcgtctggga agtcaatgtc tatacatgta tcttccgaga gatgctcgaa agaaaaaact
     1501 aaataccaat tatttagaaa aacagctgga cattacagcg acgatgagaa aactaagtgt
     1561 tatttcacga ttgagtgaaa tggcgaaata aaaaacaaga aagaacacac atgagaatcg
     1621 cagacaaaaa cgttactcgt gccgtcctgg aacgccacgg gtttaccttt aagaaatcct
     1681 ttggtcagaa ctttttgacc gatactaata ttttacagaa gattgtgaac acggcagaga
     1741 ttgaccagaa tgtcaatgtc atcgaaatcg gtcctggaat tggagccttg actgagtttt
     1801 tggcggagaa tgccgccgag gtcatggcct ttgagattga cgaccgcctg attccgattt
     1861 tggcggacac cttgggtcgc tttgacaatg tgactgtggt caaccaagat atcctcaaga
     1921 ccgacctgca gacccagatt cagaacttca agaatccaga tctgcctatc aaggtcgtgg
     1981 ccaacctgcc ctactacatc accaccccta tcctcatgca cctgattgag agcaagattc
     2041 ccttcagcga gtttgtggtc atgatgcagc gggaggtggc cgaccgcatt tctgctgagc
     2101 caaacaccaa ggcctatggc agcctgtcca ttgcggtcca gtactacatg actgccaagg
     2161 tggctttcat cgtgcctcgc accgtctttg tgcccgctcc aaacgtggac tccgccattc
     2221 tcaaaatggt tcgccgcgag caacctctgg tgagcgtcaa agatgaagat ttcttcttcc
     2281 gagtgtccaa ggccagcttt gtgcaccgcc gtaagaccct gtggaacaac ctgaccaacc
     2341 attttggcaa gtccgacgag gtcaaggaca agctgacgcg ggcacttggc atggcagagc
     2401 tggaagccag tgtccgtgga gaagcacttt ccatggctga ctttgcacgt ttgtctgata
     2461 gccttcagga agttggttta taagcaagta ttgattgcgg agaaatctgc aatcaatctt
     2521 tattttacct aaaaccattt tcaatctatc ttgtccgttg acagtggggg gaaagcttgt
     2581 tatactggga gttgataaat tttaaggaat tattgtctgc aaatgagcag aatagtaaga
     2641 acccgtattc acagttcagc acttctactt aaggatagtt tttaagctag tcatcgttag
     2701 ttttttcaaa gtacagtcag tattctctca ataaaactgc cttgattagc gaaaaactat
     2761 ctcttattga taatcacttc acttctgagt acaggttctt acaaaaacaa gagaggggtt
     2821 ccctcttttt ttatgaaggt atcttatgtt aaaaaaatta ctgaaaaagc atccagatat
     2881 tgttgcagta actgtatttt ttcttttttc gctcaccctt ctattgccac agattttgtc
     2941 aaaagcagtg gtgacaggag acgatattgt ttttcattat aatcgttttt atgatacagc
     3001 tatgcaaatt aagtcaggag atttttctta tataatgagc ttgcatggct atcagcaatc
     3061 tggaaggatt gtcaatgctc tatatggtcc atatctagcc tatttgcaag gagccttgct
     3121 gttgttggcc ggaacttggt atcgatatca actactgtct aatcttcttt taggagtttt
     3181 gagtgccact tcgctttatt ttctaatgcg agaagtgaaa gtacgctatt ctctatctgt
     3241 tgggttatcc atgtttttcg tgactaccta ctctgttcaa tactggtggg tagctcaagg
     3301 attttcaagt tggggagtgg ccttatttcc gctttgcttg attccagcag ttcgattcct
     3361 aaaaactggt aaagttccta tttttctgat ggcaggagct gtagggttaa tgttgcagat
     3421 acacatgctg tcggctctgt ttctcatctt agcctatgca attctttttt caattggttg
     3481 gttaaaatcg caagacaaat ggaacgtaat gaaagatgta ctgttttcgg ttggagtttt
     3541 tctgatttta actgtaaata tctggttacc cttattatat gtaaatgcaa caaatgaatt
     3601 agcagcacca tttataaaca aaaagtttat tcagtcaaca gttacctggt ctaaggctta
     3661 tttcttatac tttccatact ctctaccaat catttttgca acctttcttt attttatgct
     3721 gaaaaaatgg aagaagcaat cggtgatatt gagggggctg acagtaactt ttctggtatt
     3781 ttttattttt tcaacaaatc tttttccgtg gcaactattt gctggtaaag gtattggatt
     3841 agtggattta atccaatttc cctttagatt ctttttgtat gctaatgctt tacttctgac
     3901 gattgttggt cttcaattaa cagattacga agtacgtaaa aagttgtttt tggggttgac
     3961 aatcttatct accataattg gtgttggttt tacttgggat caatataatc aagcagtcaa
     4021 tgaccagtac aacaaagcag aattcttaca agatatgctt catactactc tatacggaac
     4081 aacggaagaa ttacgtgcat ccttgcattc aaaaaattta ggtgagtttg ttcaactggt
     4141 tcagaaatca actcccgact atgtgccggt gttatctgaa aaagaagaga atgttcgtgc
     4201 ggtaaatgag gctaaatctc gttatgatcg ttaccgtgac cagattattt tacctaacca
     4261 gcaatttaat aagcaagttt ttggggatag cttaaaaata agttggtcag caaatcaatc
     4321 agaggaaatc caaataccga ttgttattta ccgagatagt gaattgacat tgaatggaaa
     4381 gaggttaggg aagatggatt attatctttc cactattggt gtgccaacgg ttaccagcca
     4441 aaaagggaag aacaccctaa tcctctccta taagcaacaa tggtggttat tgccagttat
     4501 ctttatcagt ttgactggct ggatactttg gtcgatttat tataccttta tctaccgaaa
     4561 atcaaatatt tcctaagaga gaaatgctat gaaacaaatc aaactcaagg caaccaagca
     4621 atttattctg gtcatggtaa tgaccgtctt gctggctatg gggcgagccc ttttactgag
     4681 tgatgtatct tttccactct ggtttattcc cctacccttg attgcctatc ttatttttac
     4741 attttatgta ttggtcttgc ttgataaata tgagaaattt ataaagacca aaacctttgc
     4801 caagtatgtc agctattttc taggttttct atatcttgtc aacctggtct atcggctcaa
     4861 tgccaagaag tatcaaccct ggaatatttt ccggaataat ctctttcaat ttgagcttct
     4921 attgatgttg gctcttcctg tattgttggc atttttatgg cggaagaaga cgggaattcg
     4981 agaaaaatta agccagtggt cagccaatca cttggtacca gatggctatt tgctcttgac
     5041 cagcttactc tcgctcagtc ctctagccat atcttactgg aaagatagcc attatgagag
     5101 tttggttgag aaaggttctt acatagagtt tttcagccag acaccgctgt ttgcacctat
     5161 tcattttata gggacctaca tttttcttcg ctatcttcat aaggcatttg tagagtttaa
     5221 ggccaatcga accaatgtcc acagcatgct ctttatcagt ttggcactgg ctacgctatc
     5281 gcatattggt tatcaggctt ctatggctgg gggaacgggt tcttatttca cacgtcatct
     5341 ctttccgggt gttattatct ttcaaattgc ctgcctctta ttcctaaata ttatcattag
     5401 cttggtcatc aaccgtcaaa tcctatcggt tgctgtgatt gctggtctaa atgtgacctt
     5461 gatagcggct aatttcctca aattccgcta ccgttcagag ccattaactc ccaatgattt
     5521 caaatgggtc gggaacttgg ggatgattct cagcttcatc agtctacgtg ttgtcttggt
     5581 atcgctcgtc tttatagtcc tccttgtgtt tatctaccga cgtattcaca agaagtactt
     5641 ccaaggaaag attgtcgctt ctatctggaa acggctggca ggagtttcag ttatcgtatc
     5701 cttgatttta ggaatgggtt gggcgattcg caatgaaaaa gaccataaga ttgctggctg
     5761 gattcctatt ctttctcagg tcaataactg gcggaacgta gactggaagg gttacgcctt
     5821 tgtggctcgt tatcgcacac tttcattcct ctggttgcag caactcagta agaccagtat
     5881 ggaaatgcct gagaattact ctgagaagac catgaaggct attgtgaaga agtacaccgc
     5941 cttggctgag gaaatcaatg cagagcggac aggtcaattg actgaccaga cggtaatcta
     6001 cattcttagt gagagtttgg ctgacccgcg tcggattcca ggtgtaaccc ttagtcaaaa
     6061 tgtccttcca aatattgaat acatcatgag ccagactacc agcggcttga tgaagagcga
     6121 ccactatggt ggtgggactg ccaatatcga gtttcaggtc tatagtggtc tgcccttcta
     6181 caattacagc tcatccattt cttcagtcta tctggatgtg gcgccaaata tgaagaagtt
     6241 gccaagtatc agtgacctct atccagcaga taatcgtatc gccatccatc cttactacga
     6301 taccagttac aaccgaaatt ctatctataa gcagctgggg attgagcaat tctacactct
     6361 caatagtgcc aagtatcctc ttactgtgac ggctgaggat tatcagggga attttgtcag
     6421 tgacaagaag acctatgact tgattttgga gcaggtacgt tcaggaacaa atacattcgt
     6481 ttctgccatt accatgcaaa accatgtgca gtggaactct gctgagcctg caagtattac
     6541 agcttcgggt gaaagcttca cggcggaaga aaatgaaaac ctaaatagct atgttcgttt
     6601 gctgtccttt acggatcagg caaccagaga ttttctagac cagcttaaga ccttggataa
     6661 aaaggtgacc gttgtctttt acggcgacca tctgccaggt ttgtatcctg agtcagcttt
     6721 cgtgacggac ccaagcgcgc agtataagac agattatttc gtgtggagta attttgaaac
     6781 agaagactac cattatgatt tggtcaattc tagcgacatg aatgcactga tgctggagac
     6841 gaccaacaac aaggtcagtc cttactatgc cctcttgaca gaagtgctcc ataaggaccg
     6901 agtaggacag gctgagcgag atgcgaaagt tgcagaagag ctcaaactgg tccaatatga
     6961 cctatccaca ggaaaaggct accttttgaa atacaaagat tttttcaaag tagcgactga
     7021 aacgacagaa taaaaatagg ggagtgggaa agaact
//
LOCUS       DASFRC010000114         6983 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.114, whole genome shotgun sequence.
ACCESSION   DASFRC010000114 DASFRC010000000
VERSION     DASFRC010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6983)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6983)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6983
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.114"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..167)
                     /locus_tag="U1087_001616"
     CDS             complement(<1..167)
                     /locus_tag="U1087_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM4756077.1"
                     /translation="MILSKRFKNRRKELGFTQKELAEGICEQSLISRVEKLGVAPTSD
                     ILFALSQRLQVS"
     gene            complement(304..1242)
                     /gene="msrB"
                     /locus_tag="U1087_001617"
     CDS             complement(304..1242)
                     /gene="msrB"
                     /locus_tag="U1087_001617"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HEM4756078.1"
                     /translation="MKEIYLAGGCFWGMEGYFSQIDGILDTSVGYANGQVETTNYQLL
                     KQTDHAETLYLAYDETRIHLREILLYYFRVIDPFSVNQQGPDKGRQYRTGIYYTDEAD
                     LPTIEQVMTEQASLFGGRPLAVEVEPLAHYIPAEDYHQDYLKKNPKGYCHIDLGQAKI
                     PLIDVADYQKPDQQVLKDSLTDLQYQVTQEAATERPFENEFWNSDQAGIYVDITTGEP
                     LFLSTDKFDSGCGWPSFTKPISKEVATYFQDLSHGMNRIEVRSRAGHAHLGHVFDDGP
                     RDKGGLRYCINSAALRFISREEMGEAGYGLFLDLLK"
     gene            complement(1282..2811)
                     /locus_tag="U1087_001618"
     CDS             complement(1282..2811)
                     /locus_tag="U1087_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEM4756079.1"
                     /translation="MSTISYKPLNLYRQFKTAAQEFPNVAIYFDQPYASFPELGLENT
                     YQTVFEAIQRRAAQFAAADIGYGDKVVLYKSPAFDTYLLAVAVTALGAVPVMISYHLP
                     SSNLDVFAERLEKSFIVYDQETEERVAGMTRTDLVTKVFLPQVLVQEADTFEENLLPE
                     DVIQYMTHTSGTTGVPKLICHTAQTMGWRVAWQQTIFDKMTERGLLAFHISPVHSRYN
                     IGVSSAIGLGFPLYPLSSARKDDVERALALHRPSALETHPNNFVQWARLAKEKPEVFS
                     SIRYYHSTFDAINIGTLRTFLEASKEQHPVFMQVYGQSECGPMILRYHRLENLGTVSG
                     RDMGIGLEGYTEARITDAQGNPLPAGENGHIQFLSKGRAVTYYKEDARFQENVYGAWW
                     DSGDYGCMTPEGTLLLKDRQVDLIEHIDSNLALEDLLLDKLDFLSEVVIIRDVNGAPQ
                     PIIALAEDAEMNWEAWWAMVADLPLLKEPILMAYDDIPRTATMKVQRLKMEAEMKEKN
                     L"
     gene            complement(3128..3442)
                     /gene="trxA"
                     /locus_tag="U1087_001619"
     CDS             complement(3128..3442)
                     /gene="trxA"
                     /locus_tag="U1087_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEM4756080.1"
                     /translation="MVQVITDANFEVETQEGIVLVDFWAPWCGPCRMQAPILEQLADE
                     VDEDELRIYKMDVDENPNTARQFGIMSIPTLLFKKDGQVVKQVAGVHTKDQIKTILAE
                     IG"
     gene            complement(3814..4467)
                     /locus_tag="U1087_001620"
     CDS             complement(3814..4467)
                     /locus_tag="U1087_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM4756081.1"
                     /translation="MIIRKYQTSDEKGWVYCKALSYLFSPFFDDRETEKPELMTDVYD
                     YRVEWVAEVDGQIVGLIDIDIYTEECSQSYIYAPSKRTAYFTNLAVHPDFQGQGIAQV
                     LFEKAEQELREQGVEKLAIFTREDDAANHLYQKWGGEVVCSDYLVVGAPQDVPTFRFG
                     IDLERGRLSFSDMEGQPVPYYLREGVYVVSEEAGLDLFDIEDVYQELTYVVDLTEKS"
     gene            complement(4491..6824)
                     /locus_tag="U1087_001621"
     CDS             complement(4491..6824)
                     /locus_tag="U1087_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009659728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HEM4756082.1"
                     /translation="MNNKIIETLEFHKVRQKIEPYLLTEQGFEELRQLEPMVEVQRIQ
                     QAFDELTDIAQIFVENPYFSLSATSDIGPAMRRLELDTDLNIAELLAVKKVLEVSKSL
                     LDFYGNLENVSLSQLDKLFEKIELFPHLQGSLQSINDAGFVEDFASEKLARIRRKIRE
                     AEDQVRQVMQDILKTKGDMLSDSILASRNGRNVLPVKNTYRNKIAGVVHDISASGSTV
                     YIEPRAVVTLNEEISHLRAEERHELNRILQELSDMLRPHSGVIRNNAWLIGHIDFVRA
                     KHLFAREHQAVVPKLSEKQDIALLNVRHPLIAKPVPNDLYFGSQLTAIVITGPNTGGK
                     TIMLKTLGLTHLMAQSGLPILADKGSRVAIFKEIFADIGDEQSIEQSLSTFSSHMTHT
                     VQILAEADQDSLILFDELGAGTDPQEGASLAMAILDDLRLRGIKTMATTHYPELKAYG
                     IETSGIENASMEFDTNSLRPTYKFMQGVPGRSNAFEIARRLGLSDIIIQSAQSWTDTD
                     SDVNRIIEKLESQTVESRQRLDKIRDVEQENYKMNRALRKLYDELNRERENELNKARL
                     EAKEIVDMALAESEDILKNLHAAASLKPHQIIEAKAELKKLAPEVVDLSKNKVLKKAK
                     IQREAKVGDDIIVTAYGQRGTLTNQLKDGRWEAQVGLIKMTLAKDEFELVKAEKAEQP
                     KKRQVHTVKRANVRGPKARLDLRGKRYEEAMMELDEFIDQALLNNLAQVDIVHGIGTG
                     VIREGVTKYLRRNKQVKEFGYAPQNAGGSGCTIVTFK"
BASE COUNT         1908 a         1636 c         1419 g         2020 t
ORIGIN      
        1 gacacctgta agcgttgtga taaggcaaat aatatatccg atgtaggagc aactcctaat
       61 ttttcaactc gactaatcaa actctgctca caaattccct ctgcaagttc cttttgagta
      121 aagccaagtt cctttcttct atttttaaaa cgtttactaa gaatcatttt catatccttt
      181 ctgtatattt acatcttaaa taaaatccct atataaatca ttttatcaaa attatctttt
      241 ctaacatact atttcgacac aaaaagccta ttctttgcga atagactttc tgcgttccta
      301 aatttattta agcaaatcta aaaacaggcc atatcctgct tctcccatct cttctcttga
      361 tataaaacga agggctgcag agttgataca gtaacgtaat ccacccttgt cacgcggtcc
      421 atcatcaaag acatggccca gatgagcatg tccagcccga ctgcggactt caatacggtt
      481 catgccgtgg gaaagatctt ggaaataagt cgcaacttcc ttgctgattg gcttggtaaa
      541 ggagggccag ccgcatcctg agtcgaattt gtctgttgag agaaagaggg gctcgccagt
      601 cgtaatatcg acgtagatac cagcttggtc gctattccaa aactcatttt cgaagggtct
      661 ttccgtcgct gcctcctgag tgacttgata ctggaggtcg gtcaagctgt cttttaagac
      721 ttgttggtct ggcttttggt agtctgcaac atcaatcaga gggatttttg cctgcccaag
      781 atcgatatgg cagtaccctt tgggattttt cttgagataa tcctgatggt agtcttcggc
      841 ggggatgtaa tgcgcgagtg gctccacttc aacggctagg gggcgtccgc caaagaggct
      901 agcctgctcc gtcatgacct gctcgatggt cggcaaatca gcctcatctg tgtaatagat
      961 accagtccga tactggcgcc ccttgtcagg tccctgctga ttgacagaga agggatcaat
     1021 gacgcggaaa tagtagagga gaatttcccg caaatggata cgagtctcat cataggctag
     1081 atagagtgtt tctgcgtgat ctgtttgttt gaggagttga taattggtcg tctccacctg
     1141 tccattggca tagccaacgc tggtgtcaag aataccatca atctgggaaa agtagccttc
     1201 cattccccag aaacaaccgc ctgctagata aatttctttc atgtgaactc cttcttatct
     1261 gcaagcgtgg tttcgtcacc cttacagatt tttttctttc atttctgctt ccattttgag
     1321 gcgttgaacc ttcatggtcg cagtacgtgg aatgtcgtca taagccatca agatgggttc
     1381 tttcaatagt ggtagatctg caaccattgc ccaccaagct tcccagttca tctcagcatc
     1441 ttctgccaga gcaataatcg gctgcggtgc accattgaca tcgcggataa tcacgacttc
     1501 tgataaaaag tccaatttat ccagcaataa atcttccaaa gctagattgc tgtcgatgtg
     1561 ctcaatgagg tcaacctgac ggtcttttag aagcagtgta ccctctggag tcatgcatcc
     1621 gtagtcacca ctatcccacc aagcaccgta cacattttct tggaaacggg catcttcttt
     1681 gtagtaggtc accgcacggc cttttgacag aaactggata tgtccgtttt ctccagctgg
     1741 gagaggattc ccttgggcat ctgtgatgcg tgcttctgtg taaccttcca gaccaatccc
     1801 catatctcgt ccgctaactg ttcctagatt ttccaaacga tggtaacgta aaatcattgg
     1861 accacattca ctttgaccat aaacctgcat aaagactgga tgttgctctt tagaagcctc
     1921 caagaaggtg cgaagcgtac caatattgat ggcatcaaag gtggaatggt aataacgaat
     1981 gctactaaag acctctggtt tttccttggc caatcttgcc cattggacaa agttgttagg
     2041 atgggtttcc agagcacttg gacggtgaag agcaagcgcc cgttcaacat catcttttct
     2101 tgcagaagaa agcgggtaga gggggaatcc tagtccaatc gccgacgaca cgccgatatt
     2161 atagcgtgaa tgaacaggtg agatatggaa ggccagcaag cctctctccg tcatcttgtc
     2221 aaaaatagtc tgttgccaag ctactcgcca gcccatggtc tgtgctgtgt ggcagattag
     2281 ttttggaaca cctgtcgttc ctgaagtatg ggtcatgtac tgaatgacat cttctggcag
     2341 gagattttct tcaaatgtat ctgcttcttg cactaggact tggggtaaaa atacctttgt
     2401 gaccaggtca gttcgggtca ttcctgctac acgttcttcc gtttcctggt cgtagacaat
     2461 gaaagacttt tccaatcgct ccgcaaacac atctaaattc gaagatggca aatggtagga
     2521 aatcataaca ggaacagcac ccaatgccgt taccgctact gctaacaaat aggtgtcaaa
     2581 agctgggctc ttatacagaa ccaccttgtc cccatagcca atatctgctg ctgcaaattg
     2641 ggcagctctt ctttgaatgg cctcaaaaac tgtttgatag gtattttcca atcctaattc
     2701 agggaaggag gcgtagggtt ggtcaaaata aatggcaaca tttggaaact cttgagctgc
     2761 tgttttaaac tgacgataaa gatttaatgg tttgtaacta atagttgaca tatctaacct
     2821 ttctaaaatg acaatgataa ggttattata acatcttgtg ccaaccttca caatcttata
     2881 tcttagcaaa tatcgtcatt tagtttttct tttattgctt cgacaatcga ggaaatatcg
     2941 tttccatatt tccaacttca aacactccac tggtgtgttt gaactcgcct tgcatcagtt
     3001 atgcctgcgg ctgtcgacgc aaactttgtt cgcttagtac taaaagacta tattagaaaa
     3061 taatcacaaa agtaagtctg attataaaaa aacaagtagt caatccacca cttgctttca
     3121 ttttcaatta accaatctct gccaatatag ttttgatttg atctttcgtg tggacaccag
     3181 caacttgttt cacaacctgt ccatcttttt tgaacaaaag agttgggata gacatgattc
     3241 caaactgacg agctgtgttt ggattttcat caacatccat cttgtaaata cgcaattcat
     3301 cttcgtccac ttcatctgcc aattgctcca aaattggtgc ttgcatacga caaggaccac
     3361 accatggtgc ccaaaagtca acaaggacta tgccttcttg tgtttcaact tcaaagtttg
     3421 catctgtaat aacttgaacc ataattttct ccgtttctgt ttttctacta tcattctaca
     3481 ccaaaaaaaa acagaaagcg aatttttgct acggaagaga aatgagttaa acctatctat
     3541 aaaaatttca gttgtaaaaa caaatgggta aagccaaact tgtccacaac gatacaagcg
     3601 agaaatgaaa aattgttttg cttatcaaat ccaattgtaa caatgagaca aggtgacgga
     3661 gtaggtgcta cgggaaaaag aggggagata gatgtgtcga gaaaatagtg acttggaaaa
     3721 acgtattggt caagccaaac tagaccgcag ggaaacgagg gggaactcac gtacctgatt
     3781 tatttacaaa aagagaaaaa agttgaaaat gtttcaactt ttttctgtta aatccaccac
     3841 ataggttaat tcttgataga catcttctat gtcaaagaga tccaagccag cttcttcact
     3901 gactacataa acaccttctc tcaaatagta gggaactggc tgaccttcca tatctgaaaa
     3961 ggacaatcta cctcgctcta aatcaattcc aaagcggaag gttggaacat cttgtggcgc
     4021 tccgaccact agataatccg aacagactac ctcaccaccc catttctgat ataaatggtt
     4081 ggctgcgtca tcctcacgag taaagatggc taatttctct acaccttgct ctctcaactc
     4141 ctgctctgct ttttcaaaaa gcacctgggc aatgccctgc ccttgaaaat cagggtgaac
     4201 tgctaggtta gtaaaataag ctgttcgctt acttggtgcg taaatataag actggctgca
     4261 ctcttccgtg taaatatcga tgtcaattag accaacgatt tgcccgtcca cttcagccac
     4321 ccattccaca cgataatcat aaacgtctgt cattagttcg ggtttctctg tttctctatc
     4381 atcaaagaat ggagagaaga gatagctgag tgccttacag taaacccagc ctttttcatc
     4441 actggtttga tattttctga taatcataag aatctcccat cggttgatta ctatttaaac
     4501 gtcacaatag tacagcctga tccacctgca ttttgtgggg catagccgaa ctccttgacc
     4561 tgcttgtttc ggcgtaggta cttggtcacc ccttctcgga tgacacctgt acctataccg
     4621 tggacaatat cgacttgggc taggttattg agaagggcct gatcgataaa ttcatccagc
     4681 tccatcatag cctcttcgta gcgtttgcca cggagatcta agcgggcttt tggtcctcgt
     4741 acattggcac gtttgactgt gtgaacctgg cgtttcttag gctgctctgc cttctccgcc
     4801 ttgactaact caaactcatc tttggccaag gtcatcttaa tcaagccaac ctgagcttcc
     4861 caacgcccgt ccttgagctg attggtcaag gtcccgcgtt gtccataagc tgtaacgata
     4921 atgtcatcgc ccaccttggc ttccctctga attttagctt tcttcagaac cttgttttta
     4981 gacagatcca ccacttcagg cgccaacttt ttcagctctg ccttggcttc gataatctgg
     5041 tggggcttaa gactagctgc agcatggaga tttttgagaa tatcctcgct ttctgccaat
     5101 gccatatcta caatttcctt ggcttccaag cgtgccttgt tgagctcatt ttccctctca
     5161 cgattgagct cgtcatagag cttgcggagg gctcggttca tcttgtaatt ttcttgctcc
     5221 acatcacgaa tcttatccag acgctgacga ctttcaaccg tctgactttc caatttctcg
     5281 ataatgcggt tcacatcgct atctgtatcc gtccaagatt gggctgactg gataataata
     5341 tcagatagac caagacggcg agcaatttca aaggcattgg agcgaccagg aacaccctgc
     5401 ataaacttat aggtcggacg caggctattg gtatcaaact ccatgctggc attttcaata
     5461 ccagaggttt ctatcccgta ggccttaagc tcagggtagt gggtggtcgc catggtcttg
     5521 atcccccgca gacgaaggtc atccaaaata gccattgcca aggacgcacc ctcctgcgga
     5581 tctgtcccag ctcccaactc atcaaataga atgagggaat cttgatccgc ctccgccaaa
     5641 atctgtaccg tgtgggtcat gtgactggag aaggtcgata aactctgctc gatggactgt
     5701 tcgtctccaa tgtccgcaaa aatttctttg aagatagcta cccgactgcc cttgtcagcc
     5761 aagataggca aaccagactg ggccatcaga tgggtcaatc ccaaggtctt aagcatgatg
     5821 gtcttaccac ctgtgttggg acctgttatc acgatagccg tcaactgact accgaaataa
     5881 aggtcatttg gtacaggctt agcaatgagc ggatgtcgaa cgttgagaag agcaatatcc
     5941 tgcttctcag atagtttggg tacaactgct tgatgttcac gtgcaaagag atgcttagca
     6001 cggacgaaat caatatgccc gataagccag gcattgttac ggatcacacc actatgcgga
     6061 cggagcatat ccgataattc ctgcaggata cggttgagct catggcgttc ttctgcacgt
     6121 aggtgactga tttcttcgtt caaggtcacc actgcccgcg gctcaatata aaccgtcgag
     6181 ccagaagcgg agatatcatg gactacaccc gcaatcttat tgcgataggt atttttaaca
     6241 ggaaggacat tgcgtccatt acggcttgcc aaaatactat cggacagcat gtcgcccttg
     6301 gtcttcaaaa tatcctgcat gacctgacga acttgatctt cagcttcacg gatttttctt
     6361 ctaatacgag ccagcttttc tgaggcaaaa tcctctacaa aaccagcatc attgatggac
     6421 tggagggagc cctgtaaatg tggaaaaagc tcaatcttct caaagagttt atccagctgg
     6481 ctaagactga cattttccag atttccataa aaatccaaga gagatttaga aacttccaag
     6541 acctttttaa cagctaataa ttcagcgata ttgaggtctg tatccaattc caaacgacgc
     6601 atggctggac caatgtcact agtagctgac agactgaaat agggattttc cacaaaaatc
     6661 tgcgctatgt ctgtcaactc gtcgaaggcc tgttggatac gttggacttc caccatgggc
     6721 tccaactgtc gtaattcttc aaagccctgt tccgtcaaga gatagggctc aattttttgt
     6781 cttaccttgt gaaattcaag ggtttcaata attttattat tcatatgttc ctacttagtc
     6841 ttttccttag ctttatctca ttatcaaaac aataaaagat aaaaatatag tctttcccaa
     6901 tctcttacat taaagttata acagtcaact aatactcaat gaaaatcaga atcagacttg
     6961 ctccaaaggt tcggggaacc ttt
//
LOCUS       DASFRC010000115         6921 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.115, whole genome shotgun sequence.
ACCESSION   DASFRC010000115 DASFRC010000000
VERSION     DASFRC010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6921)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6921)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6921
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.115"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(116..454)
                     /locus_tag="U1087_001622"
     CDS             complement(116..454)
                     /locus_tag="U1087_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlbF/YmcA family competence regulator"
                     /protein_id="HEM4756083.1"
                     /translation="MSTNIYDIANELERAIRNLPEYKAVEAVKVSVEGNSEAKEILES
                     YISFQKEIQSKLQAGEIPTEADQKKMLDFNKKVQGNPLLTEYFSKQQQLGTYVADLER
                     IIFKPLNELL"
     gene            complement(464..1567)
                     /locus_tag="U1087_001623"
     CDS             complement(464..1567)
                     /locus_tag="U1087_001623"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HEM4756084.1"
                     /translation="MKKTILIVGLGLIGSSLALCIRKDHPDYHLIGFDPNEQSCQIAL
                     GKGMVDEVSTELEGVAKQADVILLCVPIQVSLCLIEEFSALELKDTVLITDAGSTKSA
                     IVAAAEEYLAPRKINFIGGHPMAGSHKSGASAADLHLFENAYYIMTPCQATKQDAVPR
                     LTDLLSGTGARFVQIDAAEHDRVTSQISHFPHVLASSLMHQAGEYAQDHPFTNNFAAG
                     GFRDMTRIAESEPSMWTSILLTNADSILNRIEEFQERLSEISDVLRSGDQKAIWDFFD
                     KGRQTRRAMEIHKRAGVDSFYDLFLSVPDEEDTILKVLEVLRGISIVNIRINEENRED
                     IHGILQITFKNKGNLEDAAKRLREQTTYKIHLD"
     gene            complement(1575..2741)
                     /gene="aroC"
                     /locus_tag="U1087_001624"
     CDS             complement(1575..2741)
                     /gene="aroC"
                     /locus_tag="U1087_001624"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002997861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HEM4756085.1"
                     /translation="MRYLTAGESHGPRLTAIIEGVPAGLPLTAEDINEDLKRRQGGYG
                     RGSRMQIETDRVEITAGVRHGKTTGAPITLNVTNKDHQKWLDIMAVEDIEEKLKSKRR
                     IKHPRPGHADLVGGMKYRFDDLRNSLERSSARETTMRVAVGAVAKRILAELDIEIANH
                     VVVFGGKEIDVPDGLSVAEIKERAAQSEVSIVNQEREEEIKAYIDQIKRDGDTIGGVI
                     ETVVGGVPAGLGSYVQWDKKLDAKLAQAVVSINAFKGVEFGVGFQAGYLKGSQVMDEI
                     LWSQEKGYTRRTNNLGGFEGGMTNGEALIIRGVMKPIPTLYKPLMSVDIDTHEPYKAT
                     VERSDPTALPAAGVVMESVVATTLATEILEKFSSDNMEELKAAVASHRDYVKNF"
     gene            complement(2744..3418)
                     /locus_tag="U1087_001625"
     CDS             complement(2744..3418)
                     /locus_tag="U1087_001625"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HEM4756086.1"
                     /translation="MKIVVPIMPRNLEEVEAIDVERLAEADIVEWRADYLPKDDILRV
                     APAIFEKCNGKEVVFTIRTTREGGHLDLDDQEYVNLIKEVAALYQPDYIDFEYYSYKS
                     VFEQMLEFPNLVLSYHNFEETPSNYMEIMSELTSLSPAVVKMAVMAKTEQDVLDVMNY
                     TRGFKSLNTEQTFATIAMGELGKLTRIAGVITGSCWTFASLDETSAPGQMSLGNTRKF
                     LEILEN"
     gene            complement(3415..4578)
                     /locus_tag="U1087_001626"
     CDS             complement(3415..4578)
                     /locus_tag="U1087_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent rRNA methyltransferase"
                     /protein_id="HEM4756087.1"
                     /translation="MKIKVNRIAEQKINRGIQLLDSADFSGVSFDEDRLAVLYSESGS
                     YLGQAYLSKQNKGIGWLFSRSNQDLTMDFFVKLFVDAKQKRQHFYQSEMTNAFRLFNQ
                     DGDSFGGMTVDLYDEYAVFSWYNTFIYSVKEMIVAAFQQVFPEVRGAYEKIRFKGLAF
                     ESAHLYGEEAPEYFTVLENGVHYQVFMNDGLMTGIFLDQHEVRGSLVDGLAAGKSLLN
                     MFSYTAAFSIAAAMGGAGETTSVDLAKRSRELSKAHFKVNSLDLDNHHFVVMDVFEYF
                     KYAKRKGLTYDVIVLDPPSFARNKKQTFSVAKDYHKLISQSLEILNTGGTIIASTNAA
                     NVSVEKFKRQIEKGFGVRKHRYEASYRLPADFVINKNDESSNYLKVFTIQVDK"
     gene            4694..6868
                     /locus_tag="U1087_001627"
     CDS             4694..6868
                     /locus_tag="U1087_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HEM4756088.1"
                     /translation="MKKLIDYVKKSGQTRLGFVLILLIIYWLKTLWAYYVDFNLDTQG
                     FFQNFIAIMNPLPVGILLLGLSLYIKNTKAFYSVAMTIYIVLFAWLFSNAVYYREFSD
                     YISISTMMATSSVSAGLGEAALKLFRLWDIVYFLDFIAFGFLVYRKAFHWDKTPFHKK
                     SSFAITAFSVLLFSINLFLAEIDRPELLTRGFSNTYIVRALGLPAFLGYNANQTYNAH
                     KDRSGATASDLEPVKQYITEHYAQPNDNYFGIAKGRNVIYLHLESLQQFVIDYKLNVN
                     GIEYEVTPFLNSLYHSSSTLAFSNFFNQVKAGKTSDAETMIETSLFGLNQGSFMVQYG
                     GSNTQQAAPYILSQNGGYTSAVFHGNAASFWNRNNTYKQWGYNYFFDQSYFSKATAEN
                     SFQYGLNDKIMFADSIQYLEHLQQPFYTKFITVSNHYPYTTSLIGDEIGFPLANTDDE
                     TINGYFATANYLDASIKAFFDYLKATGLYENSVIVLYGDHYGISNSRNPDLAPLIGKD
                     SQTWSDFDNAMMQRVPYMIVVPGMTNGGIFDTYGGEIDALPTLEHLLGIKSDNYLQVG
                     QDLLSSQHSQIVALRTAGSFITPKYTSYEGKIYYTETGLEITNPDETTQKEIDAIKEA
                     TAAQLATSDAIQTGDLIRFFDNGLPALDSSQYNYIDSLAAEIALENKLGTQSTSLYSK
                     NGNKSTIELFKAPSYLELHGSTTATSTPNTGTSSTSTSSTSQ"
BASE COUNT         2058 a         1617 c         1166 g         2080 t
ORIGIN      
        1 tactccccaa agtaccgttt ctgaaactgt acttggagat aagaactcac gtaagcagcg
       61 tatactaggc gtcaattcat ggcctaaccc cctgctccta tcaaatataa atatattaca
      121 acaattcgtt gagaggcttg aagatgatac gttccaaatc agctacatac gttcccaact
      181 gttgttgctt gctgaaatat tccgtcaaaa gtggatttcc ctgaactttc ttgttgaaat
      241 ccaacatttt cttttggtca gcttcagtag gaatctcacc agcctgcaat ttagattgga
      301 tttctttttg gaaagaaata taactttcca atatttcttt ggcttctgaa ttcccctcaa
      361 ctgagacctt aacggcttcc accgccttat attcaggcag gttacggatt gcacgttcca
      421 attcatttgc gatatcatag atatttgttg acataatttt ctcctaatct aaatggattt
      481 tgtaagtcgt ctgctctctt aaacgtttcg cagcgtcttc caaatttccc ttgtttttaa
      541 acgtgatttg taaaataccg tgtatatctt cacggttctc ttcattgata cgaatattga
      601 caatggaaat accccgtaag acttccaaaa ccttcaaaat cgtatcttcc tcatcaggaa
      661 cactaaggaa taaatcgtag aaagaatcaa cacctgcacg cttgtgaatt tccatggctc
      721 tacgagtttg acgtccctta tcaaaaaagt cccaaattgc tttttgatcg ccagatctga
      781 gcacatctga aatttctgaa agacgttctt gaaattcctc gattcgattt agaatagaat
      841 ctgcattggt tagcaaaatg ctagtccaca tgctcggctc actttccgca atccgtgtca
      901 tatctctaaa tcctccagct gcaaaattat tcgtaaaggg atgatcttgg gcatactcac
      961 cagcttgatg catcaaacta gaagccaata cgtgtggaaa atgtgaaatt tgactggtca
     1021 cacggtcatg ttctgccgca tcaatctgaa caaaacgtgc ccccgttcca gataacaagt
     1081 ctgtcaatcg aggaaccgca tcctgcttgg tagcctgaca cggtgtcata atgtagtaag
     1141 cattctcaaa tagatggaga tctgctgcac tggcaccaga tttatgacta cctgccatag
     1201 ggtgtccacc gataaaatta atttttcttg gcgccaaata ttcctcagca gcagccacaa
     1261 ttgcagactt cgttgaacct gcatctgtaa tcaagaccgt atccttcaat tcaagggcac
     1321 taaattcttc aatcaaacac aaagaaactt gaattggaac acaaagaaga atcacatcag
     1381 cctgctttgc tacaccctcc aattccgttg atacctcatc aaccatcccc ttgcccaagg
     1441 caatttggca tgattgttcg ttaggatcaa agccaatgag gtgatagtca ggatggtctt
     1501 tgcgaataca gagcgcaagt gaacttccaa tcaaccctag acctacaatt aaaatcgttt
     1561 ttttcattaa ttacctagaa atttttgaca tagtcgcgat gactggctac cgcagctttc
     1621 aattcctcca tattatcgga agagaacttc tctaggattt ctgtcgctag agttgtagct
     1681 acgactgatt ccatgactac accagctgct gggagagccg ttggatctga acgctccaca
     1741 gtagctttat aaggctcatg agtatcaatg tcaaccgaca tcaatggctt atagagggtc
     1801 ggaattggtt tcataacacc acgaatgatt agggcctcgc cattggtcat accaccttcg
     1861 aaaccaccta gattattggt tcggcgtgta tatccttttt cttgggacca gagaatttcg
     1921 tccatgactt ggctcccttt gagataacca gcttggaagc ctactccaaa ttctactccc
     1981 ttaaaagcat tgattgaaac aacagcctgc gctaattttg catctaactt tttatcccat
     2041 tgcacataag accccaagcc agctggaact cctccaacaa cagtctcaat cactccgcca
     2101 atagtatctc catctcgctt gatttgatca atataggctt tgatttcttc ttcacgctct
     2161 tggttgacaa tggatacttc ggactgggct gcacgctctt tgatttctgc tacgcttaaa
     2221 ccatctggga catcaatttc cttccctccg aaaacgacta catggttagc aatttcaata
     2281 tccaactcag ccaaaatccg tttggcaacc gcaccaacag ccacacgcat agttgtctca
     2341 cgcgcactag aacgctccaa ggaattacgc aaatcatcaa agcgatattt cataccacca
     2401 actaggtcag catgtcctgg gcgtggatgt ttgatacgac gcttactttt gagtttttct
     2461 tcgatgtcct caactgccat aatatccaac catttttgat ggtctttgtt ggtcacattc
     2521 aatgtaatcg gggcaccggt cgtcttaccg tgacgaacac cagcagtaat ctctacgcga
     2581 tctgtttcaa tctgcatccg actaccacga ccgtatcccc cctggcgacg ttttaaatct
     2641 tcattaatat cctcagctgt taaaggaaga ccagctggaa ctccctcaat aatggctgtt
     2701 agacgtggtc catgagactc accagctgtt aaataacgca tacttaattc tccaaaattt
     2761 ccaaaaactt acgagtattg cctaaagaca tctgtccagg tgcagatgtt tcatctaagc
     2821 tggcaaaagt ccagcaggat cctgtaatca cacctgcaat acgcgttaac ttccctagtt
     2881 cacccatagc gattgtcgca aatgtctgct cggtgtttag cgatttaaaa ccacgagtat
     2941 aattcataac atctaggaca tcctgctctg tcttagccat tacagccatt ttaacaacag
     3001 ctggtgacag gctagtcagt tcagacatga tttccatata attagacggt gtttcctcaa
     3061 aattatgata actcaacaca agattaggaa actccaacat ctgctcaaaa accgacttat
     3121 aagaataata ttcaaaatca atataatctg gctgataaag cgctgcaact tctttgatta
     3181 aattgacata ttcttgatcg tccaaatcca agtggccacc ttcacgtgtt gtccgaatag
     3241 tgaaaaccac ttccttacca ttacattttt caaatatagc aggtgctact cttaaaatat
     3301 catctttcgg aaggtagtct gctcgccatt caacaatatc tgcctctgct agacgttcta
     3361 catcaatggc ctctacctct tccagatttc taggcataat aggaactact attttcattt
     3421 atctacctgt atcgtaaaga cctttaggta attactactt tcatcatttt tattgattac
     3481 aaaatcggct ggcaagcgat aacttgcctc ataacggtgt tttctaacac caaaaccttt
     3541 ttcaatctgc cgcttaaatt tttcaacaga aacatttgcg gcgttggtcg aagcgataat
     3601 agttccacct gtatttagta tttccaaaga ttgagaaatc aacttgtgat aatctttggc
     3661 tactgaaaag gtttgtttct tatttcgtgc aaagcttggc ggatccaaga caatcacatc
     3721 ataagtcaag cctttacgtt tggcatattt gaaatattca aatacatcca ttaccacaaa
     3781 gtgatgatta tctaagtcta aactattaac cttaaagtga gctttagaaa gttctcgcga
     3841 gcgtttggct aagtcaacag aagtcgtttc ccctgctccg cccatggcag cagcaataga
     3901 aaatgctgcc gtatacgaaa acatgttcaa aagtgacttg cctgccgcca ggccatccac
     3961 caaggaacca cgtacctcat gctgatccaa aaagattccc gtcatcagtc catcattcat
     4021 aaagacctga tagtgaactc cattttccaa cacagtgaaa tactcagggg cttcttctcc
     4081 ataaagatga gcagactcaa aggccaaacc tttaaaacga atcttctcat aagctcctct
     4141 tacttctgga aatacctgtt gaaatgcagc aacaatcatc tctttgacag aataaataaa
     4201 ggtattatac catgaaaaaa ctgcgtattc atcatacaag tcaaccgtca ttccaccaaa
     4261 actatctcca tcttgattaa ataaacgaaa agcgttcgtc atctcagatt gataaaaatg
     4321 ttgacgtttc tgtttagcat ccacgaataa tttaacaaaa aaatccatgg tcaagtcttg
     4381 attgcttcta ctaaacagcc agcctatccc cttattctgt ttggacaaat aagcctgacc
     4441 caaatagctt ccagactctg aatacaaaac agccagcctg tcttcatcaa atgaaacacc
     4501 tgaaaaatca gcgctatcca agagttgaat ccctctgttt attttctgtt ctgcaatacg
     4561 gtttaccttt attttcatag aattattata acatgtttct tcatatatgc caaaaaaact
     4621 ctaaactttg aggcttattt taaaattatg gtataatgaa ctaaactttt agaaaggacc
     4681 atgaggtttt attgtgaaaa aactaattga ctatgtcaag aagagcggac aaactcgact
     4741 tggcttcgtc ttgattttgc taatcattta ctggctcaaa acactctggg cctactatgt
     4801 tgattttaat ttagataccc aaggattttt ccaaaatttt atcgctatta tgaatcctct
     4861 accagtagga attttattgc ttggtctatc gctttatata aagaatacga aggcattcta
     4921 tagtgtagcg atgaccattt atattgttct tttcgcctgg ctcttttcaa atgcagtcta
     4981 ttatagagaa ttttccgatt atatctccat ttctaccatg atggctacct ctagcgtatc
     5041 tgctggacta ggagaagcag ctcttaagtt atttaggcta tgggatattg tttatttcct
     5101 tgattttata gcttttggtt tcttagtcta ccgtaaggca tttcactggg acaaaactcc
     5161 atttcataaa aaatctagct ttgccatcac agccttttca gtattattat tctctatcaa
     5221 tctcttttta gcagaaattg atagacctga gctactgacg agaggatttt ctaatactta
     5281 tatcgtcaga gcccttgggt taccagcttt ccttggctac aatgctaatc aaacctacaa
     5341 tgcccataag gatcgctctg gggccaccgc ctcagacctg gagcctgtaa aacaatatat
     5401 tacagaacat tatgctcagc cgaatgacaa ctacttcggt attgccaaag gacgaaatgt
     5461 tatctatctc cacctagaaa gcttacaaca atttgttatt gactataagt tgaacgtcaa
     5521 cggtatcgaa tacgaagtca cacctttcct caattctctg tatcattcta gctctactct
     5581 cgccttttct aatttcttca accaagtgaa ggcaggtaaa acctctgatg ccgaaactat
     5641 gattgaaacc tcactttttg gactcaatca aggctctttc atggtccaat atggtggaag
     5701 caatacccag caagccgcac catatattct ctctcaaaat ggtggctata catctgctgt
     5761 attccacgga aatgcagcca gtttctggaa taggaacaac acctataaac aatggggtta
     5821 caattacttc tttgatcaat cctatttctc taaagccact gctgaaaatt cattccaata
     5881 cggtctgaat gataaaatca tgttcgccga ctctatccaa tatctggaac atttacagca
     5941 acccttctat accaaattta tcacagtttc caaccactac ccctatacaa ccagcttgat
     6001 tggggatgag attggctttc cattagccaa tacagatgat gaaaccatta atggctattt
     6061 tgctactgcc aactatctcg atgcgtccat aaaggcattt ttcgattact taaaagcgac
     6121 tggcttgtac gaaaactccg tcatcgtcct ctatggtgat cactatggaa tttctaattc
     6181 acgcaatcct gacttggcac cgttgattgg aaaagattct cagacttggt cagattttga
     6241 caatgccatg atgcaacgtg ttccatatat gattgttgta cctggaatga ccaacggcgg
     6301 gatttttgat acctacggtg gtgagattga tgcacttcct actctcgaac atcttttagg
     6361 aatcaaatcc gataactatc ttcaagttgg tcaagaccta ctttccagcc aacacagtca
     6421 aattgtggct cttcgaaccg ctggcagttt catcacacca aaatacacta gctacgaagg
     6481 taaaatctac tatacagaaa ctggtcttga aattacaaat ccagatgaga caactcagaa
     6541 agaaattgat gcaattaaag aagctaccgc agcacaactg gcgactagcg atgccattca
     6601 aactggtgat cttatccgtt tcttcgacaa tggattgcct gccttggatt caagtcaata
     6661 taactacatt gactcattgg ctgccgagat tgctctggag aataaacttg gtacacaatc
     6721 gacaagtttg tatagtaaaa acggcaataa gtcaacaatt gaactattta aagcaccaag
     6781 ctacctagaa cttcacggta gtacaactgc tactagcaca ccaaatactg gtactagctc
     6841 aacaagtacc agttcaactt cgcagtaata cactaaaaag cttagaatca tgtcagttac
     6901 tacattgatt ctaagccttt t
//
LOCUS       DASFRC010000116         6769 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.116, whole genome shotgun sequence.
ACCESSION   DASFRC010000116 DASFRC010000000
VERSION     DASFRC010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6769)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6769)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6769
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.116"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            104..1249
                     /gene="nagA"
                     /locus_tag="U1087_001628"
     CDS             104..1249
                     /gene="nagA"
                     /locus_tag="U1087_001628"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HEM4756089.1"
                     /translation="MTVFIKAKSIILPESEVESAYLEITDKGQFGRIVTEKPEGEIVD
                     YSDFHLAPGLVDTHIHGYASHDVMDNDFEGIKVISEGLLSCGVTSWLPTTLTDTTENL
                     DAVCETIGTYAGQETGAKIQGIFLEGPFFTEKYKGAQNPKYMSDPSIEKLDNWHSLSK
                     GLVNKIAIALEREGVKEFIEFANSKAIHTALAHSDATYAQAEAAVEAGANIFVHVYNG
                     MSGLHHREPGMVGAALNLKNVYAEMICDGHHVHPAAAEIVVKARGAEETVLITDCMRA
                     GGMGEGESRLGEFEVVVKDGTARLKESGSLAGSILELIEAVQNVVKWGLVSLPDALRM
                     ASLAPARSVNIDHICGRIAEGGAADFIVVDDAGRLQATYLDGVKRFG"
     gene            1273..2274
                     /gene="lacD"
                     /locus_tag="U1087_001629"
     CDS             1273..2274
                     /gene="lacD"
                     /locus_tag="U1087_001629"
                     /EC_number="4.1.2.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase"
                     /protein_id="HEM4756090.1"
                     /translation="MTKLQLSQAKFNHMTRLSNSDQVIAALAIDQRGALKRLLAAAAG
                     SGEFGDDILIDFKKVISSDLTPYASSILLDAEYGVPASELRHADCGFIAAYEKTGYDA
                     STPGRLPDLLPNWSAKRIKELGADAVKILLYYDVDDKPEINDIKHAWVERIGSECIAE
                     DIPYFVEILTYDASDMDVTSREYAALKPHKVNGAMREFSKSRYNADVLKVEVPVNMNF
                     VEGYTDEEPVYTVEEAKAFFKEQTDSTHLPFIYLSAGVSAKLFQETLVFAKEAGSSFN
                     GVLCGRATWKDAVAIFASEGEETAKAWLADQGRRNVEELNEVLATTARPWTEKVEVK"
     gene            3001..3960
                     /locus_tag="U1087_001630"
     CDS             3001..3960
                     /locus_tag="U1087_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM4756091.1"
                     /translation="MGFKKIILSSVALLSAVTLATCSSNSSDSSSVNVGIIQYAEHEA
                     LSSAREGFVEALGEAGYKEGENLTIDLQNAQGDQANLQTMVEKLAGKNDLNFAIATPA
                     AQAMLNADSETSSVFTAVTDPVEAGLVESLEKPGGTMTGSTDATDVEGQIEMLLKVVP
                     TAKIVGIFYNSSEVNSEVQAEQAKKALEAKGVKVEVTTVTTTNDVQQAITSLAGKVDA
                     IYLPTDNTVASTASTIGDILKEAKVPAMGSDAAVIDAALFTYGVDYHAIGVQAGELAV
                     KILKGEKPADLAVEKPNTAAITVNEEMAKAVGIDAATIKALEE"
     gene            3984..4958
                     /locus_tag="U1087_001631"
     CDS             3984..4958
                     /locus_tag="U1087_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM4756092.1"
                     /translation="MYYKLVKKLATISVASMGLLTLAACSSSSEQASSDVVKVGVLQY
                     MEHESLTAAREGFVAELEANGYKEGEKLVLDYQNAQGDQANLQTISEQLIDGNDIVLA
                     IATPSTQSLATVSTETPIVFTAVTDPLSADLVESIEKPGGLLTGTSDQAPIDKQVELL
                     GQAVPDAKTVGILYTTSERNSEVQVEQAKELLEKAGYKVVVKGITSSNEVQDATTSLM
                     KDVDALFIPTDNTVASTMTMIGELSVEHKVPVIGGSTDMVDEGGLLTYGTNYEALGRQ
                     TAKMAIKIIEGANVSETAVEYPETVSLHVNEEMAQKLGIDTSKLAVSE"
     gene            5013..5906
                     /locus_tag="U1087_001632"
     CDS             5013..5906
                     /locus_tag="U1087_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM4756093.1"
                     /translation="MDIILSSISQGLLWSVMAIGVYLTFRILDIADMTAEGSYPLGAA
                     VCATGIVNGVNPLLATFMAMVAGMGAGLISGLLHTKLKIPALLTGIVTLTGLYSINLK
                     ILGKANVALLKQETLVTQLQDFGLTKTNAVLVIGLFFVLAVVGLLTLLLNTQIGLAIR
                     STGDNIPMSEANGINVDNMKIYGYMLSNGLIALCGALLTQNNGYADLNSGTGTIVIGL
                     ASVIIAEVILRNLRLGWRLLSVVLGAVVYRLIILAILEIPGMDADLVKLFSAILLATV
                     LYVPELQKKLNIRRPKLNGNA"
     gene            5916..6716
                     /locus_tag="U1087_001633"
     CDS             5916..6716
                     /locus_tag="U1087_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM4756094.1"
                     /translation="MSTILSIQNIHKTFEAGTVNENHVLRGLNLDVKEGDFISIIGGN
                     GAGKSTFMNSLAGALTVDSGDILLEGKSIKHVSAAKRSKDISRVFQDPKMGTASRLTI
                     EENMAIAYRRGLSRGLGWGVKDSERAIFKEALKELGLGLENRMKVDTQFLSGGQRQAL
                     TLMMASLVKPKVLLLDEHTAALDPKTSDMVMELTKKIVESHQLTALTITHNMENAIEY
                     GNRLVMLHRGQIVVDVEGEEKKNLTVQNLMDLFYKNSGEKLTDDEMIL"
BASE COUNT         2021 a         1225 c         1573 g         1950 t
ORIGIN      
        1 agttatggta attacttgac attttctaat agaagttcta caatatattt agtatatggt
       61 tataaccagt ttgataagta tatatatcaa taaaggagat aatatgacag tatttataaa
      121 agcaaaatct attattttac cagagagtga ggtcgaatca gcctatttgg aaattactga
      181 caagggtcag tttggacgga ttgtgactga aaagcctgaa ggggagattg ttgattattc
      241 tgactttcat ttagcaccag ggctagttga tacacatatc cacggctacg cttctcacga
      301 tgttatggac aatgattttg aagggatcaa ggtaatttca gaaggtctct tgtcttgtgg
      361 ggtaacctct tggcttccaa cgaccttaac ggatacgact gaaaatttag atgcagtttg
      421 tgaaacgatt gggacttatg cagggcagga aacaggcgcc aagattcaag gtattttctt
      481 agaaggtccc ttctttacag aaaaatacaa gggagcacaa aatcctaagt acatgagcga
      541 tccgtccatt gaaaagttgg acaactggca cagcttatct aaaggtttag tcaataaaat
      601 tgctattgct ctagaacgtg aaggcgtcaa agaattcatc gagtttgcta acagcaaggc
      661 aattcatact gccttggctc acagcgatgc gacctatgcg caagcggaag cggcagtaga
      721 agctggtgcc aatatcttcg tccatgttta caatgggatg agtgggcttc atcaccgtga
      781 accaggtatg gtcggtgctg ctttgaattt aaaaaatgtc tatgcggaaa tgatttgtga
      841 tggacaccat gttcatccag ctgcggcaga aatcgtggtc aaagcacgtg gagctgagga
      901 aactgttttg attacggact gtatgcgagc tggcggtatg ggtgaagggg agtcccgcct
      961 cggtgaattt gaagttgttg taaaagatgg aactgctcgt ttaaaagaaa gcggtagttt
     1021 ggcaggttct atcttagaat tgattgaagc agtgcagaat gttgtgaaat ggggcttggt
     1081 atccctacct gatgcccttc gtatggcctc tctggcacca gctcgctctg tcaatattga
     1141 ccatatttgt ggtcggattg cagaaggcgg agctgcagac tttatcgtcg tagatgatgc
     1201 aggacgctta caagcgacct atctagatgg cgtgaaacga tttggttaat aaaattcctt
     1261 aggaggaaac taatgacaaa attacaactt tctcaggcta aattcaatca catgacccgc
     1321 ttgtcaaaca gcgatcaggt gattgcggcc ttggcgattg accaacgtgg tgcattgaaa
     1381 cgcctgcttg ctgctgcagc aggtagtggt gaatttggtg atgacatttt gattgacttc
     1441 aagaaagtca tctcaagcga tttgactcct tatgcaagct ccattctctt ggatgctgag
     1501 tatggtgttc cggcttcaga attgcgccat gcagattgcg gtttcattgc agcttatgaa
     1561 aaaacaggtt acgatgcgtc tacaccaggt cgtttgccag accttttgcc caattggtca
     1621 gccaaacgta tcaaagaatt gggggcggat gccgtaaaaa tcttgcttta ctatgatgta
     1681 gatgacaagc cagaaatcaa cgacattaag catgcttggg tagaacgcat tggtagtgag
     1741 tgtatcgcag aagatattcc ttacttcgtc gaaatcttga cttatgatgc cagcgatatg
     1801 gatgtgactt ctcgtgaata cgcagccctc aaaccgcaca aggtcaatgg tgccatgcgt
     1861 gaatttagta agtcacgtta taatgccgac gtgctcaagg ttgaagtgcc tgtcaatatg
     1921 aactttgtag aaggctacac agatgaagag ccagtctata cagttgagga agctaaggcc
     1981 ttcttcaagg aacaaacaga cagcactcac ttgccattca tttatttgag cgctggcgta
     2041 tctgctaaac ttttccaaga aacccttgtc tttgccaaag aagctggttc aagctttaat
     2101 ggtgttcttt gtggtcgggc gacttggaag gatgcagtag ccatctttgc aagcgagggt
     2161 gaagaaacag ccaaagcttg gttggcggat caaggccgcc gcaacgtaga agaactaaat
     2221 gaggttctag caactacagc gcgtccttgg actgaaaaag tagaagtaaa ataattgttt
     2281 tagtagggtc tgggcttagg ttcagacttt ttgttacatc aaatatagtc atttatactc
     2341 ttcgaaaatc aaaatcagtc gatgttgacc tggttttgca atccgctctt atatctctca
     2401 ccttgaacag tccatttact gtgcaagcaa tcccagaaac aagaaagcct tgagttatag
     2461 ctgcggttgt tgacgcaaac cttgttcccc ttatttccaa cctctgatta tttgtgaaat
     2521 agttggagca agtactaaaa gtaaactaaa aggctatata aacatgatga caggtcgttt
     2581 tatagctaat aatatagggg cctattttta gaaaaattcg aaaaaacttg aaaaatctga
     2641 aaatttacac aatttcctat tgacaaataa tttgaaaaca gttatgatag ttacaaataa
     2701 atgagaaagg gaaacagaga tgttacaaat gtgtcaaaat cattcagcta atcatactta
     2761 tttctacggc tattttagat agtgtttgta gacatggtaa acatggatgc aaacacggga
     2821 acgtaaagtt tgtatctatg tggctgtagc tattttgaca tgtgcctcat agatgataca
     2881 tctaaatggc acggataatt cattctgttt tcctatacag atgaaatata aggaccgttt
     2941 agagtgtagt ctaagcggtc ctttcttgtt tgctattata tttataaaag gagaataatc
     3001 atgggattta aaaaaattat acttagttca gtagcacttt tgtcagcagt aacgcttgct
     3061 acatgcagtt ccaattcgtc agattcgagt tcagtcaatg ttggtattat tcaatatgct
     3121 gaacatgaag cgttgagctc agctcgtgaa ggctttgtag aggcgctcgg agaagcaggc
     3181 tacaaggaag gtgaaaatct gacgattgat ttgcaaaatg cccaaggtga tcaagcaaac
     3241 ttacagacaa tggttgagaa attggcagga aaaaatgatc ttaactttgc catcgcaaca
     3301 ccggcagccc aagccatgct taatgcagat agtgaaacat caagtgtatt cacagctgtc
     3361 acagatccag ttgaagcagg tttggttgaa tcattggaaa aaccaggtgg gacaatgacc
     3421 ggatcgactg atgcaactga tgtggaaggt caaatcgaga tgttgctcaa agttgtacca
     3481 actgcgaaga ttgtcggtat tttctacaat tctagcgagg taaactcaga agttcaagct
     3541 gagcaggcta aaaaggcact cgaagcaaaa ggtgtaaaag tagaagtgac aacagttacg
     3601 acgacaaacg atgttcagca agctattact tcacttgcag gaaaagtcga tgctatctat
     3661 cttccaactg ataatacagt tgcctctaca gcttcaacaa tcggtgatat tttaaaagaa
     3721 gcaaaagttc cagctatggg aagtgacgcg gcagttattg acgcagctct atttacctac
     3781 ggtgtcgact accatgctat cggtgttcaa gctggtgaat tggctgtgaa gattttgaag
     3841 ggtgaaaagc cagctgactt agcagttgaa aaaccaaata cagcggctat taccgtcaat
     3901 gaagaaatgg ctaaagctgt tggtattgat gcagcgacta taaaagcatt agaagagtaa
     3961 aatatttagg agaagaaacg tttatgtatt ataagctagt aaaaaaattg gcaactattt
     4021 cagtagcaag tatgggtttg ctaacacttg cagcttgttc ctcatcatca gaacaagctt
     4081 cctcagatgt ggtcaaagtt ggagttctcc aatatatgga gcatgaatca ttgacagctg
     4141 cccgtgaggg ttttgtggcg gaattagaag caaatggtta taaagagggt gaaaaattgg
     4201 ttttggatta tcaaaatgcc caaggcgatc aagctaacct tcaaaccatt tcagaacaat
     4261 taatcgatgg aaatgatatt gtcttggcaa tcgctacgcc gtctacccag agtttagcga
     4321 ctgtgtctac tgaaacgccg attgtcttta ctgcggttac agatcccttg tcagctgact
     4381 tggtagaatc cattgaaaaa ccaggtggac ttttgacagg tacatctgac caagctccaa
     4441 ttgacaaaca agttgaattg ctaggacaag ctgttcctga tgctaagaca gttggtattt
     4501 tgtatactac tagcgaacgg aattcagaag tccaggtaga gcaagctaag gaattgctag
     4561 aaaaagcagg ttataaggta gtagtaaaag gaatcacatc ttcaaatgaa gtccaagatg
     4621 cgacaactag cttgatgaag gatgtagatg ctctctttat tccaacagac aatactgtcg
     4681 cttcaaccat gaccatgatc ggtgaattat ctgtggagca taaggttcca gtaatcggtg
     4741 gttcaacgga catggtggat gaaggaggtc ttttgactta cggtaccaac tatgaagctt
     4801 taggtcgtca aactgcaaaa atggctatta agattatcga aggagccaat gtgtcagaaa
     4861 cagcagtaga atacccagag accgtcagtc ttcacgttaa tgaagaaatg gctcagaaat
     4921 taggtatcga tacttctaag cttgctgtat ctgaataaga tcggtaagat agaacctagt
     4981 attgactacg aatttagaaa aaggagaaaa tcgtggatat tattttatca agtatctcgc
     5041 aaggtttgct ttggtcagtt atggcgattg gtgtttactt gacgtttcgt attttagata
     5101 ttgctgatat gacagctgag ggatcttatc cgcttggagc tgctgtttgt gcgacaggga
     5161 ttgtgaacgg agtgaatccc ttgctggcaa cctttatggc tatggtagct ggtatgggtg
     5221 caggattgat ttctggttta cttcatacaa aactaaaaat tccagccctt ttgaccggta
     5281 ttgtaacctt gacaggtctc tactctatca acttgaaaat cttaggcaaa gccaatgtgg
     5341 ctctgcttaa gcaagaaact ctagtgaccc aattgcagga tttcggtttg acaaaaacaa
     5401 atgcagtctt ggttattggt cttttctttg tactagcagt tgtaggtctg cttactctct
     5461 tgttgaatac tcaaattggt ctggctattc gttcaacagg ggataatatt ccaatgagtg
     5521 aggccaatgg tatcaatgta gacaatatga aaatctacgg ttatatgttg tcgaatggtc
     5581 taattgccct ttgtggtgct cttcttactc agaataatgg ctatgcagat ctcaactcag
     5641 gtactggtac cattgttatc ggtctagcat ctgtcatcat tgcagaagtt atcttgcgta
     5701 acttacgctt gggttggaga ctcctatcgg ttgttctcgg tgcggttgtt taccgtttga
     5761 ttatcttagc gattttggaa attccaggta tggatgcaga ccttgttaaa ctcttctcag
     5821 ctatccttct ggcaaccgtt ctctatgtgc cagaattgca gaagaaattg aatattcgtc
     5881 gtccaaaatt gaatggaaat gcttaggagg aagtcatgtc tacaatttta tcaatccaaa
     5941 atattcataa gaccttcgaa gcaggaacgg tcaacgaaaa ccatgtcctt cgtgggttga
     6001 acctagatgt aaaagaaggt gatttcattt ccattatcgg tggtaatggt gctggtaaat
     6061 caactttcat gaactcactt gcaggtgcct tgacggttga ttcgggcgat attttgcttg
     6121 aaggtaaatc cattaagcat gtctcagctg ccaaacgttc taaggacatc agccgtgttt
     6181 tccaagatcc aaagatggga acagcttctc gattgactat tgaagaaaac atggctattg
     6241 cctatcgtcg tggattgtca cgtggtcttg gctggggtgt gaaggatagt gaacgtgcta
     6301 tttttaagga agccttgaaa gagcttggtc tgggattaga aaaccgtatg aaggttgaca
     6361 cgcaatttct ttcaggtggt caacgtcagg ctctgacctt gatgatggct tcgctggtta
     6421 aaccaaaagt tctgctcttg gatgaacata ctgctgccct ggatccaaaa accagcgata
     6481 tggttatgga attgaccaag aaaattgtgg aaagtcacca gttgacggct ctgacgatta
     6541 cgcataatat ggaaaacgcc attgaatatg gaaatcgttt ggtcatgttg caccgtggtc
     6601 agattgttgt cgatgtagaa ggagaagaga agaagaacct gaccgttcaa aacttgatgg
     6661 accttttcta caaaaacagc ggtgaaaagc taactgacga tgagatgatt ttataaaaaa
     6721 ataagactac tgatttcatg caagtcagta gtcttttttc ttatatcgt
//
LOCUS       DASFRC010000117         6743 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.117, whole genome shotgun sequence.
ACCESSION   DASFRC010000117 DASFRC010000000
VERSION     DASFRC010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6743)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6743)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6743
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.117"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(18..812)
                     /locus_tag="U1087_001634"
     CDS             complement(18..812)
                     /locus_tag="U1087_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HEM4756095.1"
                     /translation="MDKLILGRYIPGDSIIHRLDPRSKLLAMFGFLLMIFWANNLVTN
                     ALLIAFVLGMVVLSRIRLSFFINGLKPMIGIILFTTFFQVFFTPGATILWEFWIFKLS
                     VEGLQQAAIIFVRFVLIIFFSTLLTLTTTPLSLADGIESGLAPLKKFKVPVHEIGLML
                     SMSLRFVPTLMDDTTRIMNAQRARGVDFNEGNLIQKVKSVIPILIPLFASSFKRADAL
                     ATAMEARGYQGGDGRTKYRILEWKLADTLAILVMLALAGLLFILKK"
     gene            complement(805..1647)
                     /locus_tag="U1087_001635"
     CDS             complement(805..1647)
                     /locus_tag="U1087_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter ATPase"
                     /protein_id="HEM4756096.1"
                     /translation="MGIDLQEVSYTYQAGTPFEGRALFGVDLEIVDGSYTALIGHTGS
                     GKSTILQLLNGLNVPTEGRVVIDDVVITATSENKDIKQVRKKVGLVFQFPESQVFDET
                     VLKDVAFGPQNFGVSQEEAETIAREKLALVGIDESLFERSPFELSGGQMRRVAIAGIL
                     AMEPSILVLDEPTAGLDPAGRQELMDIFKKLHESGMTIVLVTHLMDDVANYADFVYIM
                     EKGKLVRSGKPVDIFQEVDFLESIQLGVPKITKFAANLERRGFVFERLPITIEEFTGM
                     VTHG"
     gene            complement(1623..2459)
                     /locus_tag="U1087_001636"
     CDS             complement(1623..2459)
                     /locus_tag="U1087_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter ATPase"
                     /protein_id="HEM4756097.1"
                     /translation="MMNIIEVKNLKYKYNQEDEQYTLNDVSFHVKQGEWLSIIGHNGS
                     GKSTTVRLIDGLLEAESGDIYIDGDALTIDNVWDKRRLIGMVFQNPDNQFVGATVEDD
                     VAFGLENQGIPLEEMRSRVDEALELVGMTDFKTREPARLSGGQKQRVAIAGVVALRPK
                     IIILDEATSMLDPEGRLDLIKIVREIKERHGMTVISITHDLDEVALSDRVIVMKNGQV
                     ESISTPNELFMREDLVDLDLDRPFTTELASSLRQTGLDLPLRYFTEEELEETLWELIS
                     KK"
     gene            complement(2456..2995)
                     /gene="pgsA"
                     /locus_tag="U1087_001637"
     CDS             complement(2456..2995)
                     /gene="pgsA"
                     /locus_tag="U1087_001637"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HEM4756098.1"
                     /translation="MKKENIPNALTIGRILVIPIFILLLTVWDSTISHVLAALIFALA
                     SITDYLDGYLARKWQVVTNFGKFADPMADKILVMTAFIMLVELGFAPAWVVAIIICRE
                     LAVTGLRLLLVENGGTVLAAAMPGKIKTFSQMFAVIFLLLHWNVVGQITLYIALFFTL
                     YSGYDYFKGASFLFKDTFK"
     gene            complement(3005..3862)
                     /locus_tag="U1087_001638"
     CDS             complement(3005..3862)
                     /locus_tag="U1087_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM4756099.1"
                     /translation="MRQKSIGEVLRTAREGRGWTFVDLQRITKIQAKYLQALEYNDFD
                     FIANSDDVQSILKAYAEALELDADVLLDAYETNSLVKYYEDGEEELRSSELKRSYKVR
                     KRKKNSYLPLIYLLLATGLIIIFVTYIVYSRLQNRASITPTTTSYSIVEQSVSEASSG
                     TETSSTEQAQSNSTSSSSSAIENVTISGTGSNIVATLKTVTYPVEVTVTAKNTTSWIS
                     LSDTLLEGGVTLTPDNPTVTTTIEEGVTSTTLVLGVVKGVEVSVGGQKLDLSALTADT
                     GSITINFEQ"
     gene            complement(3944..5227)
                     /locus_tag="U1087_001639"
     CDS             complement(3944..5227)
                     /locus_tag="U1087_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEM4756100.1"
                     /translation="MKLVEKKYPYMKESVFYGKVDNGLTVILLPKVDFHETYGILTTN
                     FGGIHTRFTLANGKSVVYPAGIAHFLEHKLFETENEEDIMNEFAKLGASANAYTSFRQ
                     TSYLFSTTQKVLESLSLLQSFVREPYFTEDNVEREQGIIEQEIEMYQDDADYRLFTGI
                     LSSLYPESPLAYDIAGTVESIAAITADDLHENFDVFYHPSNMNLFVIGNFDLEAVWKQ
                     ISSYQVAQMDNPAQSFELAGIQKLPIQEHLSEQFEVSTPKLAVGLRGNDEVDKETIQK
                     YRLSLQFLFAMLFGWTSKRYQQLYEQGKIDSSFQFQLEVTPEYHYLIISGDTQEPITL
                     SSILMKALRKFEDDADVTEDHLQLLKNEMYGDFIRSLNSLEFTASHFVSQYSEYENVF
                     DIPQMIQSLQLDDIREAGRRFIDHCDMTDFTIFPK"
     gene            complement(5224..6477)
                     /locus_tag="U1087_001640"
     CDS             complement(5224..6477)
                     /locus_tag="U1087_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEM4756101.1"
                     /translation="MKLQEGVDLHFIDTDQFTTNRIRIRFAAEMSEATVAGRVLVANI
                     FEMGNQEFQTAQAVRRRLAELYGAQFSTSVSKRGRVHCVDVTISYVSPRHLPENEDIT
                     VEILDFLYTCIFRPLKKGRGFDSQIFEVEKTNLINFLQSEIEDNFYHADVEMSKLFYK
                     DPSLQIPRVGRLDLVEKETAESTFQIYRNMLRMDKIDIFVLGKVDREQVKRKLEDFGF
                     TYRNPKLELEYNQEYSNITQEKIERKQARQSILELAYHLQVVYNDVNYPALMVFNGLL
                     GAFSHSKLFMNVREKESLAYTIGSQVSIFSGMLKVYAGISHENRLRVMKLISKQLLDL
                     KCGKFTEEELELTKNMLIHSATLAQDRQNNLIEQVYNQVTLGNRNLSWLDWIEAIKSV
                     SIEDVIRVGQMINLQAVYFMEGTEE"
BASE COUNT         2169 a         1529 c         1005 g         2040 t
ORIGIN      
        1 tttctagcgt tttttactta ttttttcaat ataaataaga gtccggctaa agctaacata
       61 actaaaattg ctaacgtatc tgctaacttc cattccaaaa tccggtactt ggttctccca
      121 tcgccgcctt gatacccacg cgcctccatc gccgttgcaa gagcatctgc cctcttaaaa
      181 cttgatgcga ataacggaat caaaatagga ataactgact ttaccttctg aataagattt
      241 ccctcattaa agtccactcc acgagctctc tgagcattca taatccgagt ggtatcatcc
      301 atcaaggtcg gtacaaaacg caagctcatg gacaacatca aaccaatttc atgcacagga
      361 actttaaatt tcttcaaagg tgcaagcccc gactcaatac catcagccaa gctaaggggt
      421 gtcgtcgtca aggtcaatag ggttgagaag aaaataatca aaacaaagcg aacaaaaata
      481 atcgccgcct gttgcaaccc ttctacagat aatttaaaaa tccaaaactc ccatagaatg
      541 gtcgctccag gtgtaaagaa aacctgaaag aaagttgtaa atagaataat tcctatcatc
      601 ggtttcaaac cattaataaa aaatgataag cgaatacgtg ataaaacaac cattcctaaa
      661 acaaatgcta tcaacaaggc attggtgacc aaattattgg cccaaaaaat catcaataga
      721 aatccaaaca ttgctaaaag cttacttctt ggatccaagc gatgaataat tgaatcccca
      781 ggaatatagc gacctaaaat taatttatcc atgtgtcacc atccccgtaa attcttcaat
      841 tgtaatagga agacgttcaa atacaaagcc tcttctctcc aaattagctg caaacttagt
      901 aatcttaggc actcccaact gaatactctc taaaaaatct acctcttgaa aaatatcgac
      961 tggtttacca gaacggacca gctttccctt ttccataatg taaacaaaat cagcatagtt
     1021 agccacatcg tccatcaaat gagttaccaa aacgattgtc atgcctgatt catgaagctt
     1081 tttgaaaata tccatcaatt cctgacgacc cgcaggatcc aatccagccg ttggttcatc
     1141 caaaactaag atacttggtt ccattgccag aatcccagca atagctaccc gacgcatttg
     1201 accaccagat agttcaaaag gactacgctc aaacaagctt tcatcaattc caaccaaggc
     1261 caacttttca cgcgcaatcg tttcagcctc ttcctgagaa actccgaaat tttgtggacc
     1321 aaaagcaacg tcttttaaga ccgtttcatc aaacacttga ctttcaggaa attggaacac
     1381 caaccccact ttcttcctga cttgcttaat atccttattt tcagacgtcg ctgtaatcac
     1441 aacatcatca ataactactc ttccttctgt tggtacattt aatccattca agagttgtaa
     1501 aatcgttgat ttgcccgaac ccgtatgccc aataagggcc gtgtaagagc catcaacaat
     1561 ctccaaatcc acaccaaaaa gcgcacgccc ctcaaaagga gtgccagctt gataggtata
     1621 gcttacttct tggagatcaa ttcccataaa gtttcctcta attcttcctc tgtaaaatag
     1681 cggagcggta aatcaagtcc agtctggcgc aaagatgaag ccagttctgt cgtaaacggt
     1741 ctatccaagt ctaaatctac caaatcttct cgcataaata gttcatttgg agtgctaatt
     1801 gattcaacct gtccattttt catcacgata actcgatcac tcaatgcaac ctcatccaaa
     1861 tcatgtgtta tagagataac cgtcatacca tgacgctcct taatttcacg gacaatttta
     1921 atcaagtcga gacgaccttc tggatccaac atagacgtag cctcatccaa aataataatt
     1981 tttggacgca aggcaaccac tccagcaatc gccaccctct gcttctgacc accagataaa
     2041 cgagcaggct cacgtgtttt gaaatcagtc attccaacca attccaaagc ttcgtcaact
     2101 cgactacgca tctcctccaa agggattccc tgattctcta aaccaaatgc aacatcatct
     2161 tcaactgtag cacccacaaa ttggttatct ggattttgaa aaaccatacc aatcaagcgt
     2221 cgcttatccc atacattatc aatggttaag gcatcaccgt caatataaat atcacctgat
     2281 tcagcttcca acaaaccatc aatcaaacga actgttgttg atttacccga accattatga
     2341 ccaataatag atagccactc tccctgtttc acgtgaaacg aaacatcatt tagagtatat
     2401 tgctcatcct cttggttgta tttatatttt aaatttttta cttcaataat attcatcatt
     2461 taaatgtatc tttaaacaag aaggacgcac ccttgaaata atcatagcca gaatataggg
     2521 tgaagaaaag tgcaatatag agtgttattt gccccacgac gttccagtgt aagagcagga
     2581 aaataactgc aaacatctgt gaaaatgttt tgatttttcc tggcatagcc gcagctagaa
     2641 ctgttcctcc attttccacc aagagtagac gaagacctgt cactgccaat tcacgacaaa
     2701 taataattgc aactacccaa gctggagcaa agccaagctc tacaagcatg ataaatgctg
     2761 tcatcaccaa aatcttatct gccatcggat ccgcaaattt tccaaagttt gttacaacct
     2821 gccatttacg agccaagtag ccgtctagat aatccgtaat actagctaat gcaaaaataa
     2881 gtgctgctaa gacatgacta attgttgaat cccaaacggt cagtaacaag ataaaaattg
     2941 gaattaccaa aatcctacct atcgtcaatg cattgggaat attttctttt ttcatataaa
     3001 acctttattg ttcaaaattt attgtaattg agcctgtatc tgctgtcaag gctgatagat
     3061 ctaacttttg accacctaca cttacctcaa cccctttaac aacaccaaga acaagtgtag
     3121 tagaagtcac tccttcttca atagtagtag ttactgttgg attatcaggt gttagtgtaa
     3181 cgcccccctc taacaaggtg tcagaaaggc tgatccaact cgttgtattt tttgctgtta
     3241 cagttacttc tactggataa gtcactgttt taagggtcgc aacaatgtta gaacctgttc
     3301 ctgaaatagt cacattttct atagcggaac tacttgaact cgttgaattt gactgcgcct
     3361 gctcagtaga actcgtctct gtgccactac ttgcttcaga tacagattgc tcaactatac
     3421 tatatgacgt tgtagtaggc gtaatagatg ctctattttg gagcctgcta taaacaatat
     3481 aagtcacaaa aataataatc aaccccgtcg caagtaataa gtaaatcaac ggaagataag
     3541 agttcttttt acgtttacga accttatagc ttcttttcaa ttctgaagag cgtagttctt
     3601 cttctccatc ttcataatat ttcactaaac tattggtctc gtaagcatcc agtagaacat
     3661 ctgcatctaa ttccaaagcc tcagcatatg cttttaaaat agactgaaca tcatctgagt
     3721 ttgcaataaa atcaaaatca ttgtactcaa gtgcctgcaa atatttagct tggatttttg
     3781 ttatccgttg caagtcaaca aatgtccaac cccgtccttc tctggctgtt ctaagtactt
     3841 cccctatact cttttgtctc ataatatcct ctctctatcg cccatcatgt acagtatact
     3901 attctaacaa aattccaaag aaatttcgac gggttgcgcc cacttatttt ggaaaaatcg
     3961 tgaaatctgt catatcacag tgatcaataa agcgacgacc tgcctctctg atgtcatcta
     4021 actgaagact ttgtatcatt tgaggtatat caaaaacatt ttcatattct gaatactgag
     4081 aaacaaagtg actagctgta aactcaagag aatttaagct acgaataaaa tctccataca
     4141 tctcgttttt caacaattgt aaatgatcct ctgtcacatc tgcatcatcc tcaaatttcc
     4201 taagtgcttt catcagtata ctagaaagcg taatgggttc ttgagtatct cccgagataa
     4261 tcaaatagtg gtattcaggt gtaacctcta attggaactg gaaagaagaa tcaatttttc
     4321 cctgctcgta taactgttga tagcgttttg aagtccaacc aaacaacatg gcaaataaaa
     4381 attgtaaact aagccgatat ttctgaatag tctccttatc aacctcgtca tttccccgta
     4441 aaccaacagc caattttggg gtagatactt caaattgttc tgagagatgt tcctgtatcg
     4501 gcaacttttg gatacctgcc aattcaaacg actgagctgg attatccatc tgagctactt
     4561 gataacttga aatttgtttc caaactgcct ctaaatcaaa attaccaata acgaataaat
     4621 tcatgttact tggatgataa aacacatcaa aattctcatg taaatcatcc gcagtaattg
     4681 cagcaattga ttcaactgtc cctgctatat cataggccaa aggactttct ggataaagcg
     4741 atgatagaat tcccgtaaac aagcgataat ctgcatcatc ttgatacatc tcgatttctt
     4801 gttcaataat cccctgttct ctttctacat tgtcttctgt aaaatacggt tctcgaacaa
     4861 aagattgtaa aagtgataga gactccaata ctttctgagt cgttgaaaat aagtaactag
     4921 tctgtctaaa actggtataa gcatttgcgc ttgctcccaa tttagcaaac tcattcataa
     4981 tatcctcttc attctcagtt tcaaacagct tatgttctaa aaaatgtgca atccctgcag
     5041 gataaacaac acttttacca ttagccaatg taaatcgagt atgaataccc ccaaaatttg
     5101 tcgttagaat tccatatgtc tcatggaaat ctactttagg aagcaaaata actgtcaacc
     5161 cattgtcaac tttcccataa aagacagatt ctttcatgta aggatacttc ttctcaacta
     5221 acttcattct tctgttccct ccataaagta aacagcctgt aaattaatca tctgtcctac
     5281 tcgaatgaca tcctctattg ataccgattt gatagcctca atccaatcta accaacttaa
     5341 atttctattt cctaaggtaa cttgattata tacttgttct atcaaattat tctgcctatc
     5401 ttgagccaag gttgctgaat gaatcaacat gttttttgtc aactctaatt cttcttctgt
     5461 aaacttacca cattttaaat caagtagttg tttactaatt aacttcatta ccctgagtct
     5521 gttttcatgg ctaattccag catagacctt cagcattcct gaaaaaatag aaacctgact
     5581 gccaattgta taggccaaac tttctttctc acgaacattc ataaataact tcgaatggga
     5641 gaaagcaccc agtagaccat taaataccat caaagccgga tagtttacat cgttgtaaac
     5701 tacttgtaaa tgatatgcca attccaaaat ggactgcctt gcctgtttac gctcgatttt
     5761 ttcttgcgtg atgtttgagt attcctgatt atattctaac tctaattttg gatttctata
     5821 agtaaaacca aaatcttcaa gttttctttt gacttgttct ctgtcaacct tccctaagac
     5881 aaatatatca attttatcca tacgcaacat attccgataa atctgaaaag ttgattctgc
     5941 tgtttctttt tcaaccaaat caagcctacc gacgcgtgga atttgaagag agggatcttt
     6001 ataaaaaagc ttactcattt caacatctgc atgataaaaa ttatcttcta tctctgactg
     6061 aagaaaattg attaaattcg ttttttcaac ctcgaaaatc tggctatcaa atcctcgccc
     6121 ctttttcagt ggtctaaata tacatgtgta taaaaaatca agaatctcca ctgtaatatc
     6181 ctcattttct ggtaagtgac gaggactgac atatgaaatt gtcacatcta cacagtgcac
     6241 cctaccacgt ttcgaaactg aggtcgagaa ctgagcacca tacaattctg ccaatcttct
     6301 ccgaacagcc tgagcagtct gaaattcttg gttacccatt tcaaaaatat ttgcaactaa
     6361 cacacgacca gcaactgtag cctcactcat ttcagctgca aagcgaatac gtatacgatt
     6421 tgtcgtaaac tgatctgtat caataaaatg aagatctact ccctcttgta atttcatcgt
     6481 cttcctcttt caaacattgt accttccatt ataccatttt gtgataaggt atgcttggct
     6541 ttagcatttg attgctttac acgcctttat agttgatttt actggatttt ttgaaaaatg
     6601 tgtaaacttt ataaagcgtt acattttcct agaaagtcca caaaaaggtg aacaaatttt
     6661 acaaataaaa aaaggttatc aaagggcgat aacctaaaaa ttttatgagt tcagcaggca
     6721 agtactagcg tagtgatcag cta
//
LOCUS       DASFRC010000118         6719 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.118, whole genome shotgun sequence.
ACCESSION   DASFRC010000118 DASFRC010000000
VERSION     DASFRC010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6719)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6719)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6719
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.118"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            21..686
                     /locus_tag="U1087_001641"
     CDS             21..686
                     /locus_tag="U1087_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM4756102.1"
                     /translation="MKTFCQGMKWLGRKLWVLLRAFGLLLIAVLPDAILEVSTSQLAQ
                     WGAALVSFVIIVFMYWRAEKNGIKIWDRSFLTWKGLGLVVLTFAVAQLFKHLGYYIME
                     LQGIEETSNELELTKLLENIPFWLAFVRIACQAAISEEIIVRGYLFKKLFEKYKILGI
                     VVSGLIFAFLHGPTDLGSWIIYASPGFLLAYLYYKTDYLIYPIAVHFINNAWSVLAFY
                     YFQ"
     gene            complement(767..1693)
                     /locus_tag="U1087_001642"
     CDS             complement(767..1693)
                     /locus_tag="U1087_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM4756103.1"
                     /translation="MNLSKEKQLFHHYYANWLRIYKEGAIREVTLKKYRMTLQWLIRL
                     APSLLLEDLNRVRYQELINSYAKTHERQTTMDFHHQLKGAILDAVDEGIIERDPTRKV
                     IIKGRLPRKKKTKYLNQFELHQLIQELRLGEELNWDWLILLIAKTGIRFSEALALTTQ
                     DFDFHRQLLTIDKTWNYKGDGGFLPTKNKSSIRKIQLDWQTSTQFANLLQHTQPDDLL
                     FVKKERIYNSTINAILEKRCLSANLPVITIHALRHTHASILLFAGVSIASVARRLGHA
                     SITTTQKTYLHIIRELENQDVDLIMRSLSGLC"
     gene            1787..2389
                     /locus_tag="U1087_001643"
     CDS             1787..2389
                     /locus_tag="U1087_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEM4756104.1"
                     /translation="MKNFKERKIMKLEELAHFTGGSLQVRLDTTSWEDARDYILYNQQ
                     HHQLDGYEVIEEVIDSRTVTTDREVTLLEEGDLLFSLLSGKAVLVRAEHAGLLYTQNY
                     IKIEPIAKLDKVFLLYLINESSAIRRQFYQSLQGSEVMKYTVKQLKSLQLGALPPLDS
                     QQKLGKIYLDGLVLRQKRQAYAQGDFLRLTYLLKEVYAHE"
     gene            2382..5588
                     /locus_tag="U1087_001644"
     CDS             2382..5588
                     /locus_tag="U1087_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HEM4756105.1"
                     /translation="MNELAFETELIQYITTGTITQPEHLEGLEWSVSDSSTLYAVKSK
                     LWTYEPSIKTTEQLWENFRNILWQHNQHRLDKPLSDTEFAQVKQIISDLKTPYEAGQF
                     LYGISGVSELEITLDDGRHTFLTVFDQRKIGGGDTVYQVVNQIRRAPKIPGRRECIFD
                     TTLLINGLPIIQIEEKKDTIDVDKALNQMHQYIQERQYTDIFSTLQILVAIAPNNVRY
                     MANTTAEKFNKDFAFHWQRKSDGSKVRNWKEFADSMLSIPMAHQMTTNYMILDGTPQK
                     QMLKVMRPYQVYATQAVIEGIKKVDFELGCNKVGYIWHTTGSGKTITSFKTAWLASRM
                     PKVDKVVFLVDRIALTNQTKDDYLAYDPEAGENSFGSIRETQNTTALARQLTSKDSGI
                     IVTSVQKLDTLVKRKSFKSPDKHIVFIVDEAHRSTGGDSFAGIQKAFKKAAWIGYTGT
                     PNLDDTGASLRTQDIFGPLLHAYTIKNAISDRNVLGFKVDFETTIDQEKLKTTYLPDF
                     YRQKYPKWTSAQIEEKIANLSPDDMDDAVTSSIYDENPEHVRLVVEDVFKHWANRSGS
                     GRYNALFTTHVGGGRASTPMAMMYFREFQRINQLHREQGGLVLKVGVTFALNTQNNDS
                     MVESNTGLLEAITIYNTEFGTSFGLSDVASYTEDLVSRLNRTAKDKNYLDLVIVVDQL
                     LTGFNAPELNTLYVDRTLKGASLIQAYSRTNRVEDMDKKPFGRVVNYRWPAHNEKLMN
                     QALAIYADDSAANLSEAEQKNNNEKNGLVAKPFKEVFAEVKQTVDQLRELTGDFNDIP
                     KSEKKREAMLELLRAYNQGLSKLKQYQPEEVDGVIEGFDYNQPDRFIESLGMSVEEEK
                     LLTTVLANELKRTLAKEQKVSIHQIELKMTHIKEVTIDYDKLTELVELLLNQVHEEKM
                     VEAAATRDELDRFASGLEDLNYADQIRQTGDAIYRGDFPTQDMNFAYPVKGIDSQKII
                     QEASHVYIDKKLFAFRIQWGLTEHIRNQELRELLARHRYGQNDLDDTGHLRTLIKEAS
                     RDYQTWAEDDAVKGLSKIQYRNQLRQALYDLADDLVGQ"
     gene            5696..>6719
                     /locus_tag="U1087_001645"
     CDS             5696..>6719
                     /locus_tag="U1087_001645"
                     /inference="COORDINATES: protein motif:HMM:NF013579.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEM4756106.1"
                     /translation="MTKEKSTVPRLRFPGFTYAWKQRKFSDLAEVRRGLTYSPSAIRS
                     HGVRVLRSSNINEDTFVFGEDDVFVDKSVVKIPLVEEGDILITSANGSSRLVGKHSII
                     KGLPSNSAIHGGFMLLASSKVPCFLNAFMSSIWYHKFIGLYVAGGNGAIGNLNKSDLD
                     EQIVLVPTLPEQAAIGSFFSDLDQLITLHQRKLDDVKELKKALLQKMFPKGNGNDFPE
                     LRFPEFTDAWKQRKLGEVAEKISQKNLDRQYVETFTNSAEFGIISQRDFFEKNISSLD
                     NISGYYIVSPDDFVYNPRISNLAPVGPIKRNKLGRVGVMSPLYTIFRFSDIHLDFVEK
                     YFDTTIW"
BASE COUNT         2046 a         1187 c         1536 g         1950 t
ORIGIN      
        1 tatcagaata ggggattgat atgaaaacat tttgtcaagg gatgaaatgg cttggtcgaa
       61 aactttgggt attactgaga gcgtttggtt tgttattaat tgctgttctt ccagatgcta
      121 ttttagaggt atctacttct caattagccc agtggggagc agccttagta tccttcgtga
      181 ttattgtctt tatgtactgg agagctgaga agaatggtat caagatttgg gatagaagtt
      241 ttttaacttg gaaaggtctt ggtttagttg tcttaacatt cgcggtagct cagctgttta
      301 aacaccttgg ctattacatt atggaacttc aggggattga agaaaccagc aatgagcttg
      361 aattgacaaa gttattagaa aacattccat tttggttagc ctttgttaga attgcctgtc
      421 aggcagcgat ttcagaggag atcattgtca gaggctatct attcaaaaag ctatttgaaa
      481 agtacaagat tctaggaatt gtagtatctg gtttgatttt tgctttcctg catggaccaa
      541 cagatttggg ttcatggatt atttatgcta gcccaggttt cttgctggct tacctctact
      601 ataaaacaga ttatctgatt tacccaatag cagttcattt tatcaataat gcctggtcgg
      661 tgctggcttt ctactatttt caataagcat aaagaaaaga cgattccgtt tggagtcgtc
      721 ttttgctatt gtcagtacaa gccttgtcac gatagagata ggaatgtcaa caaagtcctg
      781 atagtgaccg cataattaaa tcaacatctt ggttttccaa ctcacgaatg atatgaagat
      841 aggttttttg ggtcgttgtt atgcttgcat gaccaagtcg tctagcaaca cttgcgatag
      901 aaaccccggc aaataataaa atagatgcat gggtgtgtcg cagggcgtga atggtgatga
      961 caggaagatt tgcacttagg caacgctttt caagaatggc attgatggta gagttgtaaa
     1021 tccgctcttt cttcacgaaa agtaggtcat cgggttgggt gtgctgcaat aagttggcga
     1081 attgggtgct ggtttgccag tcgagttgga tttttcgaat tgaagattta ttttttgtag
     1141 gtaaaaatcc gccgtctcct ttataattcc atgttttatc aatggtcaat agctgtctgt
     1201 gaaaatcaaa atcttgagta gtgagagcaa gggcttctga gaatcgaata cctgttttag
     1261 caattaataa gatgagccaa tcccaattca gctcctctcc gagacgtaat tcttgtatca
     1321 actgatgaag ctcaaattgg ttgaggtatt ttgtcttttt ctttcgagga agtcttcctt
     1381 tgataatcac cttacgtgtc gggtctcgtt caataattcc ttcatctaca gcatctaaaa
     1441 tagctccttt caactggtga tgaaaatcca tggttgtctg tcgttcatgt gttttagcat
     1501 agctgttaat caattcttgg taacgaaccc gattcaaatc ttccaacaac agactaggag
     1561 ctagtctgat aagccactgc aatgtcattc tatatttctt gagagtgact tctcgaatgg
     1621 ctccttcctt gtaaatccgt agccaatttg cataatagtg atggaaaagc tgtttttctt
     1681 ttgataagtt catggcagaa cctccttttt aatttttaaa aattacataa tttattgaca
     1741 gatttccgag gagatgctat acttatttta gcgaaaaaat gtaattatga aaaatttcaa
     1801 agaaaggaaa attatgaaac tagaagaatt ggctcacttt acgggaggta gtttacaggt
     1861 tcgcttggat actaccagct gggaagatgc tagagactat atcctctaca atcagcaaca
     1921 tcatcaattg gatggttatg aggtgataga agaagtgata gatagtcgga ccgtgacgac
     1981 agatagagaa gtgaccttgc tcgaggaggg agacttactc tttagtttac tatcggggaa
     2041 ggctgtttta gtgagagcgg agcacgcagg cttactctat acacagaact atatcaaaat
     2101 tgagcccatt gcaaagctgg ataaggtctt cttgctgtat ctgatcaatg aatcctcggc
     2161 tattagacgg cagttttacc aaagcttaca ggggagtgag gtaatgaaat atacagtcaa
     2221 gcaactgaaa agtttacagc taggcgcctt gcctccttta gatagtcagc agaaactagg
     2281 aaagatttat ttagatggat tagtcttacg gcagaagcgg caagcttatg cgcaaggaga
     2341 ttttttacgg ctaacatatt tgttaaagga ggtttacgca catgaatgaa ttagcatttg
     2401 aaacagaatt gattcaatat attacgacag ggactattac acagccggag cacctagaag
     2461 gtctagaatg gtctgttagt gattcttcga ccctgtatgc agtcaaatct aaactgtgga
     2521 cttatgagcc gagtatcaag acaacggagc aattatggga aaattttcgt aatattctct
     2581 ggcaacacaa ccaacatcga ttggacaaac ccttgagcga taccgagttt gctcaggtca
     2641 agcagattat ttcagatctg aaaacacctt atgaggctgg tcagttttta tatgggatta
     2701 gcggtgtttc cgaattggaa attacacttg atgatggacg gcatacattt ttgacagtat
     2761 tcgaccaacg taagataggc ggtggggaca ctgtctacca agtggtgaac caaattcgta
     2821 gggctcctaa aatccctgga cgacgagaat gtatatttga tacaaccttg ttgattaatg
     2881 gcttacctat tattcagatt gaagagaaaa aggatacgat agatgtagac aaggcattga
     2941 accaaatgca tcaatatatc caggaacggc aatatacgga tattttttct accttgcaga
     3001 ttctagtcgc tatcgccccc aacaatgttc gctatatggc caataccact gcggagaaat
     3061 ttaataagga ctttgctttc cactggcagc gtaaatctga cggtagtaag gttcggaatt
     3121 ggaaagaatt tgcggattcc atgctcagca ttcctatggc ccatcagatg acgaccaact
     3181 acatgatctt agacgggaca ccgcagaaac aaatgctgaa agtcatgcgt ccctatcaag
     3241 tttacgccac tcaggcggtc attgagggga taaaaaaagt cgattttgaa ttaggctgta
     3301 acaaggttgg ttacatctgg catacgacag gctcagggaa gacgatcact agttttaaaa
     3361 cagcttggct ggcaagtcga atgcccaagg tagacaaggt tgtctttcta gtggatcgta
     3421 tcgctttgac caatcagact aaggatgatt atctggctta tgatccagaa gctggggaga
     3481 atagttttgg cagtattcga gaaactcaaa ataccacagc cttggcacgg cagttgacta
     3541 gtaaggatag tgggattatc gttacttctg tgcaaaaatt agatacactg gtgaagagaa
     3601 aatccttcaa atcaccagat aagcatatcg tgtttatcgt tgacgaagct caccgctcaa
     3661 ctggtggaga tagttttgca gggattcaaa aggcctttaa gaaagcggct tggattggct
     3721 atacaggaac tcccaactta gatgatacag gtgctagtct acggacgcaa gatatttttg
     3781 gccctcttct tcatgcctac actattaaaa atgccattag tgatcgcaat gtactagggt
     3841 ttaaggtgga ttttgagaca accatcgatc aggaaaaact aaaaacaact tacttgccag
     3901 atttttatcg gcaaaaatac ccgaagtgga caagtgcaca gattgaagaa aagattgcca
     3961 atctaagtcc agatgatatg gatgatgcgg tgacttctag catctatgat gaaaatccag
     4021 agcatgttcg actggtagtc gaagatgtct tcaaacactg ggcaaatcgc tccggcagtg
     4081 gccgttacaa tgccttattc accacccacg taggtggagg cagggcctcc acacccatgg
     4141 ctatgatgta tttccgagag tttcaacgaa tcaatcaact gcatcgagag caaggaggtc
     4201 tggtcttgaa ggtgggagtg acctttgcct tgaatactca aaataatgat agcatggtcg
     4261 agtcaaatac tggtttgctt gaagctatta cgatctataa cacagaattt gggacgtcct
     4321 ttggcttgtc agatgttgct tcttatacag aggacctggt tagtcgcctt aatagaacag
     4381 ccaaggacaa gaactactta gatttggtga ttgtcgtgga tcagttgttg acaggtttca
     4441 atgctcctga gctcaatact ctttatgttg accgaaccct taaaggagcc agtcttatcc
     4501 aggcctattc tcgtaccaat cgtgtggagg atatggataa aaaacctttt ggacgggtgg
     4561 tcaattaccg ctggccagct cataatgaga aattgatgaa tcaggccttg gccatctatg
     4621 cagatgatag tgctgccaat ttatcagaag cggaacaaaa aaataacaat gaaaaaaatg
     4681 gactggtggc taagcctttc aaggaagtat ttgcggaagt caaacaaacg gtcgaccaat
     4741 tgagagagtt gacgggtgat tttaatgata ttccgaagtc tgagaaaaag cgtgaggcta
     4801 tgttagaatt gctccgtgct tacaatcaag gattgtctaa gctgaaacag tatcagccag
     4861 aggaggttga tggggtgatt gaaggatttg attacaatca gccggaccgc tttattgaaa
     4921 gtttgggaat gtctgtagag gaagaaaaac ttttgacgac agtcttagcc aacgaattga
     4981 aacgaacctt ggcgaaagaa caaaaagtta gcattcacca aattgaactc aagatgactc
     5041 acatcaagga agtgacaatt gactacgata aattgaccga actggttgag ctcttgctga
     5101 atcaggttca cgaagagaag atggtagaag ccgcagctac cagggatgaa ttggatagat
     5161 ttgcaagcgg tttggaagac ctcaactatg ctgaccagat ccgtcaaaca ggggatgcaa
     5221 tctatcgagg tgattttccg acacaagata tgaactttgc ttatccagtc aaggggattg
     5281 atagtcagaa gattatccaa gaagcctcgc atgtttatat tgacaagaag ctctttgctt
     5341 tccgaatcca atggggcttg acggaacata tccgcaacca agaactacga gagttgttgg
     5401 cgagacatcg atatggtcag aatgacttgg atgataccgg acacttacgt accttgataa
     5461 aagaagctag tcgcgattac cagacctggg cagaagatga tgctgttaaa ggcttgagta
     5521 agattcagta ccgcaatcag ttgagacaag cactatatga tttggccgac gacttggttg
     5581 gtcaataggt tgcgattttg ttggatgata gcgtataata gaatggaaat cgtccgaaaa
     5641 attgcaaaaa taactttcaa aaataaaaca aaaagaaagt agaaaaggag ggactatgac
     5701 aaaagaaaaa tcaaccgtac cacgattgcg cttccccgga ttcacgtacg cttggaaaca
     5761 gcgtaagttt tctgatttag cagaagttcg taggggacta acatattctc catcagctat
     5821 acgaagccac ggtgtgcgtg tgttacgttc ttcaaatatt aacgaagata catttgtttt
     5881 tggagaggat gatgttttcg tcgataaaag tgtagtaaaa attcccttag tggaagaagg
     5941 ggatatatta ataacctctg ctaatggttc gagtagatta gtgggcaaac attctattat
     6001 caaaggtttg cctagtaatt ccgcaataca tggtggtttt atgttattag catcatctaa
     6061 agtaccatgt tttctcaatg catttatgag ttcaatttgg tatcacaagt ttattggttt
     6121 gtatgttgcg ggaggaaatg gagcaatcgg aaacttgaat aagagtgacc tagatgagca
     6181 gattgtttta gtccccaccc tccctgaaca agcagccatc ggcagcttct tctccgacct
     6241 agatcagctt attactcttc atcagcgaaa attagatgat gttaaagaat tgaagaaggc
     6301 tttgttacag aaaatgtttc cgaaagggaa tggaaacgat tttcctgagc taagattccc
     6361 agaatttacg gacgcttgga aacagcgtaa gttgggggaa gttgcggaaa aaattagtca
     6421 aaaaaatcta gatagacagt atgtagaaac ttttacaaat tctgctgaat tcggtatcat
     6481 ttctcagagg gatttctttg aaaaaaatat ctctagtttg gataatataa gtggatacta
     6541 tattgtgagt cctgatgatt ttgtatataa tccaaggatt tcaaatttag ctccagttgg
     6601 tccaataaag cggaataaat tgggaagagt gggggttatg tcgcctcttt atactatatt
     6661 tagattttca gatatacatt tggattttgt agagaagtat tttgacacaa caatttggc
//
LOCUS       DASFRC010000119         6663 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.119, whole genome shotgun sequence.
ACCESSION   DASFRC010000119 DASFRC010000000
VERSION     DASFRC010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6663)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6663)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6663
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.119"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            159..1919
                     /locus_tag="U1087_001646"
     CDS             159..1919
                     /locus_tag="U1087_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003108409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICBA"
                     /protein_id="HEM4756107.1"
                     /translation="MENTSIRVRLQKLGTTLSNMVMPNIGAFIAWGVLTSLFIPTGWL
                     PNETFATIVGPMIKYLLPLLIGYTGGYNVYGQRGGVMGAILTMGVIEGSSVPMFIGAM
                     VVGPFGAWVIKKFDQAIQPKIRPGLEMLVNNFSAGLIGFVLMLVTFKVVGPFVESMTG
                     VVGDGVQAIVDMKLLPLANIIIEPAKVLFLNNALNHGIFTPLGTEQVLEAGKSVLFLL
                     EANPGPGLGILLAYAFFGKGSAKSSSWGAMVIHFLGGIHEIYFPYVLMKPALFLAAIA
                     GGVSGTFVFQTLGAGLAGAASPGSIIAVTLMLPKGDNTFGNALAVYAGVFAGALASFL
                     VASIILKADKSEGESLEAAQAATKAAKAVAKGQAVETVAAEISANSVKQIIFACDAGM
                     GSSAMGASLLRDKVKKAGLDIPVTNKAIANLQDTEYTLIVTQQELADRAAQRTPRAIH
                     VAVDNFLTSPKYDEIVAKLVGQAQEVSPRQVSLDAEAEVDLNYIDEVVFAYGQAQGSA
                     TMGQATLAAIFKNKGIGIPVATVPYDKLTEHNAKNILVVTTIAQQAEVQQVAPNAQLL
                     VVDSLVTTPEYDKIVARMHK"
     gene            1949..3901
                     /locus_tag="U1087_001647"
     CDS             1949..3901
                     /locus_tag="U1087_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019804801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="HEM4756108.1"
                     /translation="MLLTKREEQLMKAFLQVGKLSLKEMADILQVSSRTVYRTLSDLT
                     DFLIEHEIDLVKDGKKYYLSGDLSALEDYKTLDSYSPSQRLELMIYQLLTSQEVITNE
                     QFQEQFLVSNVTVIQDIAVIEKRLSDFDLCLVRHKGYGIEGTNSQKRRLLAILLANAI
                     AIQDFWQDNYDNYPSLDKEVVEESRRAFESHQTVLGDIDSKLKQLLIILLSLADNQGE
                     LDHRVGVSKEALDFSQKVFMRLAQASKRFYSIQEIIFFASILDELIIKRQEVPLFRES
                     FDSSFYYNISQLIDSVSRFTKIDFIKDRLLFPLLFNHIRLSLAVPMLFPDHATTNVAY
                     LATQKNPFLHRLVSLVIQDIFPTYLHNEYEYELVTLHFASSLRRSPDIYPIRLLLVTD
                     ERPLTTSVLVSKIKNIAPFVEWIDVQSTTNLSQLNLEHYDYCLTTKPVGQDGLDLIST
                     FPNTQEILDLQETLQAIQENRTVLIREDIKEENHCDLQAYLKASSQVLQSFRLIHLGQ
                     QTSFDEAVVATVGELDHVADRAYLADKLLTRFAVSPLAIPQTNLALIHTQSSQVRHSQ
                     FVIVELENSVSALSMNNQQEAVQRILVMLTPLGVEAEVRELMTAISQSIIENKLYTEI
                     YRTGNQEIIYQLLNSIFTETIKKLEK"
     gene            3903..4340
                     /locus_tag="U1087_001648"
     CDS             3903..4340
                     /locus_tag="U1087_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012961912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM4756109.1"
                     /translation="MELQQNLIKLNQAFTTKEEAIRYCGHQLVQAGHVNEAYIEAMIE
                     RNQELSVYMGNFIAIPHGTDAAKKEVLSSGITIVQVPAGVNFGTEEAPKIAIVLFGIA
                     GVGDEHLEIIQKISIFCADVDNVVKLADAQSEDEVITLLNSVG"
     gene            4354..5490
                     /locus_tag="U1087_001649"
     CDS             4354..5490
                     /locus_tag="U1087_001649"
                     /EC_number="1.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002963177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HEM4756110.1"
                     /translation="MKQAVHFGAGNIGRGFIGEILFENGFEIAFVDVNETIIDALNQR
                     HAYEIEIAEEGQRHIAVSGVRGINNRLNPEEVVTALATADFVTTAIGSNILPFIAGLV
                     AQGIEARREAGNTQPLDVLACENMIGGSAFLYEEVKKHLSEEGLAYAAEFIGFPNAAV
                     DRIVPAQSHEDPLFVVVEPFNEWVVETQGMKNPNLKLEGVHYEADLEPFIERKLFSVN
                     SGHATSAYTGAHFGATTILEALQNPEVKSKVETVLAEIRSLLIAKWNFDEQALVDYHK
                     VIISRFENPYIVDDIARVARTPIRKLGYDERFIRPIRELRERGLSYDNLLATVSYIFG
                     YKDETDEQSVQLQALLQEKSLPEVVAEVTGLTEPALIEEIVAII"
     gene            5705..6346
                     /locus_tag="U1087_001650"
     CDS             5705..6346
                     /locus_tag="U1087_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004228788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM4756111.1"
                     /translation="MDYVLEVLPSLLNGAVVSLQVFFLVLILSLPLGAVFAFLMQIKF
                     KPLQWLLHFYVLIMRGTPLLLQLIFVYYVLPSVGITFDRMPAVILAFTFNYAAYFSEI
                     FRGGIEAIPKGQYEAAKVLKFTPVQTIRFIVLPQVVKIVLPSVFNEVMTLVKDTSLVY
                     ALGVSDLLLASRTAANRDASLAPMFIAGAIYLLMIGAVTLISKQVEKKFDYYR"
     gene            6356..>6663
                     /locus_tag="U1087_001651"
     CDS             6356..>6663
                     /locus_tag="U1087_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000891751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM4756112.1"
                     /translation="MLELRNLSKRFDNKQIFSNYDLVIPEGKIIAIVGQSGGGKTTLL
                     RMLAGLETIDSGTLIYNGQELPLEELGKRHLLGFVFQDFQLFPHLSVLENLVLSPVKT
                     "
BASE COUNT         1818 a         1345 c         1484 g         2016 t
ORIGIN      
        1 atagatagat ataaagacga atgtagctgg cttcttgcca atgcattggt ctttttgttt
       61 ttgaagattg ctttgtcaca aaaattgtga caagatttga gttttattgt gtcaagaggt
      121 tttgtataat aaacttacaa aataggagga aaaataatat ggaaaatact tcaattcgtg
      181 ttcgtcttca aaaactgggg acaacgctgt ctaacatggt catgcccaat atcggtgctt
      241 ttatcgcttg gggtgtcttg acctcgctct tcattccaac aggttggttg ccaaatgaaa
      301 cctttgcgac tattgttggc ccgatgataa aatatctctt gccacttttg attggttata
      361 ctggtggtta taatgtttat ggtcaacgtg gtggtgtcat gggtgccatc ttgaccatgg
      421 gggtcatcga gggctcgtct gttccaatgt ttattggagc catggtcgtg ggtcctttcg
      481 gtgcctgggt tatcaagaaa tttgaccaag ctattcagcc aaaaatccgt ccaggtttgg
      541 aaatgttggt taacaacttc tctgctggtt tgattggttt tgtcttgatg ttggtgacct
      601 tcaaagttgt tggtccattc gttgaaagca tgactggcgt ggttggtgat ggtgtacaag
      661 cgattgtcga tatgaaactc ttgccacttg ctaacatcat catcgagcca gctaaggtac
      721 tcttcctcaa caacgccctc aaccacggga tctttacccc gcttggtaca gagcaagtct
      781 tggaagctgg caagtctgtt ctcttcctct tggaagctaa ccctggtcca ggtcttggta
      841 tcttacttgc ctatgccttc tttggaaaag gctctgctaa atcatcttca tggggggcaa
      901 tggtcattca cttcctcggt ggtatccatg aaatctactt cccatacgta ttgatgaagc
      961 cagctctttt ccttgctgct attgctggtg gtgtatctgg tacctttgtt ttccaaacct
     1021 tgggtgcagg tcttgctggt gctgcctctc caggttcaat cattgcggtt accttgatgt
     1081 taccaaaagg tgataataca tttggaaatg cattggccgt atatgctggt gtattcgcag
     1141 gtgctcttgc ttcattcttg gtagcttcta tcatcttgaa agctgacaag tcagaaggag
     1201 aatcattgga agctgctcaa gcggctacaa aagctgcaaa ggctgttgct aaaggtcaag
     1261 cggttgaaac agtcgctgca gaaatctcag caaattctgt taaacaaatt atcttcgcct
     1321 gtgacgcagg tatgggtagc tctgctatgg gtgcttcgct actccgtgat aaagttaaaa
     1381 aagctggatt ggacattcct gttaccaata aggctattgc caacttgcaa gatacagaat
     1441 ataccttgat tgttactcag caagaattgg cggaccgtgc tgctcaacgt acaccacgcg
     1501 ctattcatgt cgcagttgac aacttcttaa cctcaccaaa gtatgatgaa attgttgcga
     1561 aactagtcgg tcaagcccaa gaggtttctc ccaggcaagt aagtttagat gcagaagcag
     1621 aagtagattt gaactatatc gacgaagtgg tctttgccta cggtcaagcc caaggttctg
     1681 ctacaatggg tcaagcaact ctagcagcta tctttaaaaa taaggggatt ggtattccag
     1741 tagccactgt tccttatgat aaattaacag agcacaatgc taaaaatatt ctggttgtta
     1801 ccactattgc ccaacaggca gaggttcaac aagttgcacc gaatgcacaa ctcttggtag
     1861 ttgatagtct agtgactaca ccagagtatg acaaaattgt cgctcgcatg cacaagtaat
     1921 ttttgaaaca atgtagtata ataaagctat gctattaaca aaacgtgaag aacaattgat
     1981 gaaagctttc ctccaagtag ggaagctttc attgaaagaa atggctgata ttttacaggt
     2041 gtcctcacga acggtttatc ggaccttgtc tgatttgaca gattttttga tcgagcatga
     2101 aatcgatttg gttaaggacg ggaagaagta ttatttgtct ggtgatttgt cggctctgga
     2161 agactacaag actttggatt cctattctcc tagtcaacgc ttggaactca tgatctatca
     2221 gctcttgacc agtcaggaag tgataaccaa tgaacaattt caagaacagt tcttagtttc
     2281 caatgtgacg gtcattcaag atattgcagt cattgaaaaa cgcttatcgg attttgacct
     2341 gtgccttgtg cgtcacaaag gttatggaat agagggtaca aatagtcaga aaaggcgact
     2401 tttagctatc cttttagcca atgcgattgc tattcaagac ttctggcagg ataattatga
     2461 caactatcca agtttggaca aggaagtggt agaggaaagt cgtcgtgcct ttgaaagtca
     2521 ccaaactgtt ttgggtgata ttgattctaa actcaagcag ttgctgatta ttctcttgag
     2581 cctagctgac aatcagggag agctagatca tcgagttggc gtttccaagg aagccttgga
     2641 tttttcccag aaggtcttca tgcgtctagc ccaggccagc aaacgctttt acagtatcca
     2701 agaaattatc ttctttgcaa gtatcttaga tgagttgatt atcaagcgac aggaagtgcc
     2761 actcttccga gaaagctttg atagtagctt ctactacaat atctcccagc tgattgactc
     2821 ggtatcacgc tttaccaaaa ttgattttat caaggatcgg cttctttttc ctctgctatt
     2881 taatcacatt cgtttaagtt tggcagtgcc tatgctcttt ccagatcatg ccacgaccaa
     2941 tgttgcttat ctggctaccc agaaaaatcc cttcctacat cgactggtca gcttggttat
     3001 acaggatatc ttcccgacct acttacacaa tgaatatgag tatgaactgg tcaccctgca
     3061 ctttgcatca agcttgcgca gaagtccaga catttatcca attcgtttgc tcttggtgac
     3121 ggacgaaaga ccactgacga caagtgtttt ggtgtcaaaa atcaaaaata tcgcaccatt
     3181 tgtggaatgg attgatgttc agagtacgac aaatctgtca cagttgaatt tagagcacta
     3241 tgattattgc ttgacaacaa agcctgtcgg acaagacgga ctggatttga tttctacctt
     3301 cccaaatacc caggaaattc tggacttgca ggaaactcta caagctattc aggaaaatcg
     3361 tacggtcttg atacgggaag acatcaaaga ggagaatcat tgcgatctgc aggcctattt
     3421 aaaagccagt agccaagtct tgcaatcctt tcgcctaatt catcttggtc agcagactag
     3481 ttttgatgag gcagtagtcg ctactgttgg agagttggat catgtggctg atagagctta
     3541 cttggcagac aaactcttga cccgctttgc agtcagtccg ctggccattc ctcagacaaa
     3601 tctggccctt atacatactc agtctagtca agtaagacat agtcagtttg ttattgttga
     3661 actggaaaac agtgtttccg ccctctccat gaataatcag caggaagcgg tccaacgcat
     3721 tttggtcatg ttgacgcctc taggcgtgga ggcagaagtc cgcgaattga tgacagctat
     3781 cagtcaatcc attatcgaaa acaaacttta tacagagatt taccggacgg gcaatcagga
     3841 aatcatttac cagttgctca attcaatctt taccgaaact atcaagaaat tggagaaata
     3901 acatggaatt acaacagaac cttattaaac taaaccaggc ctttacaacg aaagaagagg
     3961 ctattcgcta ctgtggacat cagttggttc aagctggtca tgtcaatgaa gcctacatcg
     4021 aggcaatgat tgagcggaac caagaattgt ctgtttacat gggcaatttt attgccattc
     4081 ctcatggaac agatgccgcg aaaaaggaag tcctatcatc agggattacc atagttcagg
     4141 tgccagcagg tgtcaacttt gggacagaag aagctccgaa gattgcgatt gtcctctttg
     4201 gaattgcagg tgtgggcgat gagcatttgg aaattattca gaaaatctca attttctgtg
     4261 cggatgttga taacgttgtc aaattagcag atgctcagtc agaagatgaa gtaatcaccc
     4321 tgttgaatag tgtaggataa gggagaagaa gagatgaaac aagcagttca ctttggagca
     4381 ggcaatatcg gacgcggctt tatcggggaa atcctctttg aaaacggctt tgagattgcc
     4441 tttgtcgatg ttaatgaaac cattattgat gcattgaacc agcgtcatgc ttacgagatt
     4501 gaaatagcag aagaaggcca acgccatatt gcagtttcag gggtgcgtgg gattaacaac
     4561 cgtcttaatc ctgaagaagt tgtcacagcc cttgctacag ctgattttgt aacgacagct
     4621 attggatcaa acattctgcc tttcattgca ggtcttgtag ctcaagggat tgaagcccgt
     4681 cgagaagcag gcaataccca accgcttgat gttttggctt gtgagaatat gattggtggc
     4741 tctgcctttc tttacgaaga agtcaaaaaa cacttgtcag aggaaggttt ggcttacgca
     4801 gcagagttta tcggcttccc aaatgcagcg gtggaccgca ttgtcccagc ccaaagtcat
     4861 gaagatccac tctttgtcgt agttgagcct ttcaatgagt gggtggttga aacccagggc
     4921 atgaaaaatc caaacttgaa gctagagggt gttcactatg aagcggactt ggagcctttc
     4981 attgaacgca aactcttctc tgtcaactca ggtcatgcga cttctgccta cacaggtgcg
     5041 cattttgggg cgactactat cctagaagcc ttgcaaaatc cagaggtgaa aagcaaggtt
     5101 gaaactgtgc tggcagaaat ccgtagtctt ctgattgcca aatggaactt tgacgagcaa
     5161 gctttggtgg actaccataa agtcatcatt agccgttttg aaaatcctta tatcgtggat
     5221 gacattgccc gtgtggctcg gacgccaatc cgtaagcttg gttatgacga acgctttatc
     5281 cgcccaatcc gtgaactccg tgaacgtggc ttgtcttatg ataaccttct tgcgactgtc
     5341 agctatatct ttggctacaa ggatgaaaca gatgagcaat ccgttcaact gcaagctctt
     5401 ttgcaggaaa aatccttgcc agaagttgta gcagaagtga caggcttgac tgaaccagcc
     5461 ttgattgaag aaattgtagc tatcatctaa attgcgcctc tagtgtgtgg taggtttaca
     5521 aatgaactaa agcgaacaag ttattctgtt ttgcagaaaa tgaaccttgt tcgcttttca
     5581 ttttgattgc ttttgcaatt ttatacaatt tataggtaaa ttattagaaa attgaaaact
     5641 tttctttgta atacaagata ttttctgcta tactagaacc taatcattct tttaggagaa
     5701 ctttatggat tatgttttgg aagttctgcc cagtctatta aatggtgcgg tagtttccct
     5761 gcaagtattt tttctagttt tgatactatc cttgcccctg ggagctgttt ttgccttttt
     5821 aatgcagatt aagtttaaac ccttgcaatg gcttttgcat ttctacgtgt taattatgcg
     5881 tggaactccc ttgcttttgc aactgatttt tgtttattat gttttaccta gtgttggtat
     5941 cacttttgac cgtatgccag cagtcattct agcctttact tttaactatg cggcctattt
     6001 ctctgaaatt ttccgtggtg gtattgaagc tattccaaaa ggtcagtatg aagctgctaa
     6061 ggtattgaaa tttacacccg ttcagaccat tcgttttatc gtcttgccac aggtggtgaa
     6121 aattgtcttg ccaagtgtat tcaatgaagt aatgaccttg gtcaaggata catctttggt
     6181 atatgcctta ggtgttagcg acctcttgct tgctagccga actgcggcca accgtgatgc
     6241 cagtctggca cctatgttta ttgcaggagc aatctatctg ttgatgattg gagctgttac
     6301 acttatttct aaacaagtag aaaagaaatt tgactattat agataggagg aagtcatgtt
     6361 agaactacgc aatctatcca aacgatttga taataaacag attttctcca actatgattt
     6421 ggtcattcca gaggggaaaa taattgccat cgtcggtcaa tcaggtggtg gtaagactac
     6481 tcttttacgg atgttggcag gtttggaaac cattgattca ggaaccttga tttataatgg
     6541 tcaagaactg ccacttgagg aattggggaa acgacatctg ctgggctttg tcttccagga
     6601 cttccagctt ttcccacacc tatccgtttt ggaaaacttg gttctctctc ctgtgaaaac
     6661 gca
//
LOCUS       DASFRC010000120         6652 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.120, whole genome shotgun sequence.
ACCESSION   DASFRC010000120 DASFRC010000000
VERSION     DASFRC010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6652)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6652)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6652
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.120"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(14..322)
                     /locus_tag="U1087_001652"
     CDS             complement(14..322)
                     /locus_tag="U1087_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1827 family protein"
                     /protein_id="HEM4756113.1"
                     /translation="MKIINTTNSHPNLVQSQLANTDAFLVETYSAGNTDVIFTQAPRH
                     YELLISNKYRAVQQNEIEQIRDFFLHRKIDERTINKAAIQTIHTDRLIEMSIPIIAEV
                     "
     gene            complement(377..838)
                     /locus_tag="U1087_001653"
     CDS             complement(377..838)
                     /locus_tag="U1087_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEM4756114.1"
                     /translation="MEKIAVFGEKKAGVSYQSRFGVYAVIPDEKKEQIILVQAPNGAW
                     FLPGGEIEKGENHLIALERELMEELGFTAEIGKYFGQADEYFYSSHRDTHFYNPAYIY
                     EVTSYHQIGQPLEDFNHIAWFPVNEAIDKLKRGSHKWGIEQWKLQENSFNN"
     gene            complement(1024..3252)
                     /locus_tag="U1087_001654"
     CDS             complement(1024..3252)
                     /locus_tag="U1087_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HEM4756115.1"
                     /translation="MLCKNCNINDATIHLYTNLNGKQQQVDLCHNCYQIMKTDPNNAI
                     LRGLGDLTNPNNMDPFSEFFNHLGGYPGNTPAGKNREQTPPTQASGHNGRGGHTPPPQ
                     QPQQPNGLLEEFGINVTEIARRGDIDPVIGRDQEITRVIEILNRRTKNNPVLIGEPGV
                     GKTAVVEGLAQKIVDGDVPQKLRDKEVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRN
                     RREIILFIDEIHEIVGAGSAGDGNMDAGNILKPALARGEMQLVGATTLNEYRIIEKDA
                     ALERRMQPVKVEEPSVEETITILKGIQNKYQDYHHVKYSDAAIEAAAVLSNRYIQDRF
                     LPDKAIDLLDEAGSKMNLTLNFIDPKEIDQRLIDAENRKAQATRDEDYEKAAYFRDQI
                     AKYKEMQKATISEEDIPLITEKEIEAIVEQKTNIPVGDLKEKEQSQLVNLASDLKAHV
                     IGQDEAVDKIAKAIRRNRVGLGAPNRPIGSFLFVGPTGVGKTELSKQLAIELFGSADS
                     MIRFDMSEYMEKHAVAKLVGAPPGYVGYEEAGQLTEKVRRNPYSLILLDEVEKAHPDV
                     MHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKVEASVGFGAAMEGRTQSVLG
                     QLSNFFTPEFMNRFDGIIEFQPLSKENLLEIVSLMLDDVNKRLSHNGISLHVTDKVKE
                     KLVDLGYDPKMGARPLRRTIQDQIEDAITDFYLEHPAEKDLRAVMSSKGTIQIKAQTK
                     TK"
     gene            3476..3706
                     /locus_tag="U1087_001655"
     CDS             3476..3706
                     /locus_tag="U1087_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005592360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1797 family protein"
                     /protein_id="HEM4756116.1"
                     /translation="MESHLVRIINRLEAMANDGGTLKRNFERDGIVVAEVAYSYDEEN
                     GSVFTLRDVAARETYAFDSIDLIAMEIYELLY"
     gene            3831..4520
                     /locus_tag="U1087_001656"
     CDS             3831..4520
                     /locus_tag="U1087_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM4756117.1"
                     /translation="MNFSFLPEYWAYFNYGAIVTLIIAFFSVFFGSILGVLLAFAQRS
                     KYKVLAWTANIYVWIFRGTPMIVQIMIAFAMTHFVAPTFQLGILTVDLTRLIPGIIVI
                     SMNSGAYVSETVRAGINAVPKGQLEAAYSLGIRPKQAMRYVIMPQAIKNILPALGNEF
                     VTIVKDSSLLSTIGVMELWNGAQTVQSTSYIPLTPLVFAASYYLIMTTVLTVIIQSFE
                     KKLNKGGQFHV"
     gene            4513..5247
                     /locus_tag="U1087_001657"
     CDS             4513..5247
                     /locus_tag="U1087_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019805208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM4756118.1"
                     /translation="MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGK
                     STFLRTMNLLEVPTKGTVTFEGVDITDKSNDIFKMREKMGMVFQQFNLFPNMTVLDNI
                     TLSPIKTKGIAKDEAEKKAKELLEKVGLPDKANAYPQSLSGGQQQRIAIARGLAMDPD
                     VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMDGGVI
                     VEDGTPEEVFEHTKEERTKDFLSKVL"
     gene            5377..6225
                     /locus_tag="U1087_001658"
     CDS             5377..6225
                     /locus_tag="U1087_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase"
                     /protein_id="HEM4756119.1"
                     /translation="MTVIDGKALGVKLQAALAEKTARLKEEKGLVPGLVVILVGENPA
                     SQVYVRNKERSALAAGFKSEVIRVPDTITESDLLDLIERYNQDDEWHGILVQLPLPAH
                     ISEEKVLLAIDPDKDVDGFHPTNMGKFWSGHPVMIPSTPAGIMEMFKEYQIELEGKSA
                     LVIGRSNIVGKPMAQLLLDANATVTIAHSRTKNLPELARQADILVVAIGSGHFVTKEF
                     VKPGAVVIDVGMNRDENGKLIGDVKYDEVSEVASYITPVPGGVGPMTITMLMEQTYEA
                     CVRSAK"
BASE COUNT         1809 a         1187 c         1529 g         2127 t
ORIGIN      
        1 gccatctggc ttcttacact tctgcgataa tgggaataga catttcaatc aaacggtctg
       61 tgtgaatcgt ttgaatggca gccttgttaa tagttcgttc atcaattttt cgatgaagga
      121 agaaatcacg aatttgctcg atttcatttt gttgtactgc acggtattta ttactaatca
      181 agagttcata atgacggggt gcctgtgtga aaataacgtc tgtattacct gcagaataag
      241 tctctactag gaaagcatca gtattagcca actggctttg gacaagattg ggatgactat
      301 ttgtcgtgtt aatgattttc atgtggaacc tcctctatct ctttggctac attatagcac
      361 gattagagtg tttttactag ttattgaatg aattttcttg caatttccat tgttcaatgc
      421 cccatttgtg actaccacgt ttgagtttat cgatggcttc attgactggg aaccaagcaa
      481 tatggttgaa atcttctagt ggttgtccta tttgatggta gctagttact tcatagatgt
      541 aggctggatt atagaaatgg gtatcgcggt ggctagagta gaagtattcg tcagcctgac
      601 caaagtattt tccgatttca gcggtgaatc caagctcttc catcaattcg cgctccaaag
      661 caatgaggtg attttctccc ttttcaattt ctccaccagg aagaaaccaa gctccgtttg
      721 gtgcttgaac gagtatgatc tgttctttct tttcatctgg gataactgcg taaacaccaa
      781 agcgactctg gtagctgacg ccagccttct tttctccaaa tacagcaatt ttctccatag
      841 gcaattctat cctctttcat tattggaatg agttgtatac attataccac ttttttatta
      901 tttttccttg tgataggctt tacaaagtaa agttttttta taggatggag atggggaaga
      961 atttagataa atagagtagc aaaacagtaa aataggctac tcgtagagag cagctctatt
     1021 ttcttatttt gtctttgttt gtgccttgat ttgaattgta cctttacttg acatgacagc
     1081 acgtaggtct ttttctgctg gatgttctaa gtagaagtcg gtgatagcat cttcaatctg
     1141 atcttggatg gttctgcgta gtggacgagc tcccatcttt ggatcgtagc caaggtccac
     1201 taatttctcc ttaactttat ctgttacatg gaggctgatg ccattgtgag aaaggcgttt
     1261 gtttacatcg tctagcatga ggctgacgat ttcaagtagg ttttccttgc tcagtggttg
     1321 gaactcaata ataccgtcaa atcggttcat aaattcaggt gtgaagaaat tgctaagttg
     1381 gccaagaact gattgagtcc gcccttccat agccgcacca aaaccgacac ttgcttcaac
     1441 ttttccagta ccagcatttg atgtcatgat gataatggta tctttgaagc tgacagtacg
     1501 accttgtcca tctgtcagac gcccatcgtc taagacctga aggaacatgt gcatgacatc
     1561 tgggtgggct ttttcaactt cgtcaaggag gatgagtgag taaggattac gacggacttt
     1621 ttctgtcaat tgtccagcct cctcatagcc tacatagcct ggaggagctc cgacgagttt
     1681 agcgacagcg tgtttttcca tgtattcgga catgtcgaag cggatcatgc tgtcagccga
     1741 accgaagagt tcgatagcta attgcttaga caattcggtt ttaccgacac ctgttggtcc
     1801 gacaaagagg aaggatccaa tgggacgatt tggagcaccg agaccgacac gattacggcg
     1861 gatggcttta gctatcttgt caactgcctc atcttgtccg ataacatggg cttttaagtc
     1921 actagcgagg ttcacaagct gggactgttc cttttctttt aaatcaccaa ctgggatatt
     1981 tgttttttgc tcaacgatgg cctcaatttc tttttcagta atgagtggaa tatcttcctc
     2041 gctgatagtt gccttttgca tctccttgta cttagcaatt tggtcacgga aataggccgc
     2101 tttttcatag tcttcatccc gtgtagcttg tgctttacga ttttcggcat caatcaggcg
     2161 ttggtcaatt tcctttggat caataaagtt gagggtcaaa ttcatttttg aaccagcttc
     2221 atccagaagg tcaatagctt tgtctggtag gaaacggtct tgaatgtagc ggttggacag
     2281 tactgcagca gcttcgatag cagcatcgga gtatttaaca tgatggtaat cctggtattt
     2341 attttggata cctttgagaa tagtaatggt ttcttcgaca cttggttctt caacttttac
     2401 aggttgcata cggcgttcta gggcggcatc tttttcgata atacggtact cgttgagcgt
     2461 tgttgcaccg actagttgca tttcaccacg tgcgagggct ggtttgagga tattgcctgc
     2521 atccatgtta ccatcgcctg cagagccagc accgacaatt tcgtgaatct cgtcaatgaa
     2581 aagaatgatt tcgcgacgat tacggatttc ttccatgagt ttttgcatgc gttcttcaaa
     2641 ttgtccgcgg atacctgttc cttgtacaag gctgacaaca tccagacgaa tgacttcctt
     2701 gtctcgtaat ttctgtggga catcgccatc aacaattttt tgagccaagc cttcaacaac
     2761 cgctgtttta cctacaccag gctcaccgat aagaacaggg ttgttttttg tacgacggtt
     2821 gagaatttcg atgacacggg taatttcttg atcgcgaccg attactggat caatatcccc
     2881 acgacgggca atttcggtaa cgttgatacc aaattcttca aggagcccat ttggttgttg
     2941 gggttgttgc ggaggagggg tatgtccacc acgtccatta tgcccactgg cttgagtggg
     3001 aggagtctgt tcgcgatttt ttccagcagg ggtattgcca ggatagccac ctaggtgatt
     3061 gaaaaattca ctaaagggat ccatattgtt aggatttgtt aaatctccca acccacgtag
     3121 gatggcatta ttagggtctg ttttcatgat ttggtagcag ttgtgacaga ggtctacctg
     3181 ctgctgttta ccgtttaagt tggtgtagag atggatcgtt gcgtcgttga tattacaatt
     3241 tttgcagagc ataattctac ctctttctgt gaaaaaatgt gacctattgt taaatagtca
     3301 aaaaaggtca gttctagctt tattataaca agattcatag aaaaatcaag aaactgctac
     3361 gcttggaaaa actttctatg aaaaataggg cgataggaag aaaataggga aaaaataaga
     3421 cttttttggc aatatgtggt aaaatattcc tataaaaagg attaggagaa cgaatatgga
     3481 atcacatttg gtgagaatta tcaatcgtct ggaagctatg gctaatgacg gcggtacgtt
     3541 gaaacgtaat ttcgaacgtg atggtattgt tgttgcagaa gtggcttata gctatgacga
     3601 ggaaaatggt tcagtattta ccttgcgtga tgttgctgct cgtgaaacgt acgcgtttga
     3661 cagcatcgac ttgattgcaa tggaaatcta tgagctattg tactaagaag aagtgagagg
     3721 cacctaaggg tgcttttttc ttgtgtaaat tgaatattat aaataaaaat attgcataaa
     3781 tattcaaaaa tggtataata gactctaaat gacagaattg gagtaagatg atgaattttt
     3841 cttttttgcc tgagtattgg gcttatttta attatggggc aattgttacc ctcattattg
     3901 catttttctc agtatttttt ggtagtattt taggtgtgtt gcttgccttt gctcagcgta
     3961 gtaagtataa agttttagct tggactgcca atatctatgt ctggattttc cgtgggacac
     4021 cgatgattgt ccagattatg attgcttttg cgatgacaca ttttgtagca ccaacttttc
     4081 agctaggaat tttgacggtt gatttgacgc gcttgattcc aggtatcatt gttatttcga
     4141 tgaactcggg tgcctatgta tctgaaactg ttcgtgccgg tattaatgct gtaccaaaag
     4201 gacagctgga agcagcttat tcgcttggta ttagaccaaa gcaggcgatg cgttacgtta
     4261 tcatgccaca ggctatcaag aatattcttc cagccttggg aaatgaattt gtgactattg
     4321 ttaaggatag ttcacttttg tcaaccattg gtgtgatgga attatggaac ggtgctcaga
     4381 cagttcaatc cacttcttat attcctttaa caccacttgt atttgcagcg agctattatc
     4441 taattatgac aacggtgcta acagtgatta ttcagtcgtt tgagaaaaag ttgaacaagg
     4501 gagggcagtt ccatgtctaa tgcgattatt tctatcaagg atttacataa gtacttcgga
     4561 aagaatgagg ttctaaaagg aattgattta gatattcaac aaggtcaggt ggtcgttatt
     4621 atcggtccat cagggtcagg gaaatcgact ttcttacgta caatgaacct cttagaagtg
     4681 ccaaccaagg gaactgttac atttgaaggt gttgatatta ctgacaagtc aaatgatatt
     4741 ttcaagatgc gtgaaaagat gggaatggtt tttcaacagt tcaatctttt tccgaatatg
     4801 acggtattag ataatattac tttatcacct attaagacaa agggaatcgc aaaggatgag
     4861 gctgagaaga aggctaagga attacttgaa aaggtaggat tgccagataa ggcgaatgcc
     4921 tatccacaaa gcctttcagg tggtcagcaa caacggattg ctattgcacg tggtctggcc
     4981 atggacccag atgtcctact ttttgatgaa ccgacctctg cactagaccc tgaaatggtt
     5041 ggtgaagttc ttgctgtaat gcaggatttg gccaagtcag ggatgaccat ggttatcgtg
     5101 actcatgaga tgggatttgc gcgtgaggta gctgacaggg ttatctttat ggatggcggt
     5161 gtcatcgtgg aggatggaac gcctgaagaa gtctttgaac ataccaagga agaacggacc
     5221 aaggatttct tgtctaaggt cttgtaataa atgaacaaat aagtacgact ccgacattgt
     5281 tcggagtttt ttgctatatg ctatagtcta ctttgtacaa gtatagtcag tcggagaatt
     5341 ttagggtata atagaaaaaa caaaaggagt gtaggtatga cagtcattga tgggaaagca
     5401 ctaggtgtaa aattgcaggc tgctttggcg gagaaaactg ctcgattaaa agaagaaaag
     5461 gggttggtac caggtcttgt agttatttta gttggcgaaa atcctgctag tcaggtctat
     5521 gtacggaata aggagcggtc agctctagct gctggattca agagtgaggt tattcgcgtt
     5581 ccagatacga ttactgagtc agacttgttg gatttgattg agcgctataa tcaggatgat
     5641 gaatggcatg gtattttggt gcaattgccc ttaccagccc acatcagcga ggagaaggtc
     5701 ttgttggcca ttgacccaga taaggatgtg gatggttttc atccgactaa catggggaaa
     5761 ttctggtcag gtcatcctgt tatgattcca tctaccccag caggaattat ggaaatgttc
     5821 aaggaatatc agattgagct ggaagggaag tcagctttag ttattggtcg ttctaatatt
     5881 gttggtaaac cgatggcaca gctgttattg gatgccaatg ctactgtaac gattgcgcat
     5941 tctcgtacca aaaacttgcc agagcttgct cgtcaggccg atattcttgt tgttgctatt
     6001 ggtagtggtc attttgtgac taaggaattt gttaagccag gtgccgtggt gattgatgtt
     6061 ggtatgaatc gtgatgaaaa tggcaagcta atcggtgatg tcaaatacga tgaggtatca
     6121 gaagtggcga gttatattac cccagttcca ggtggtgttg gtccgatgac tattaccatg
     6181 ttgatggaac agacctatga agcttgtgtc agaagtgcaa aataagatag agagtttaat
     6241 aaaaataaat atatccatgc ctgctttggt aaagctctct tcttagaacc tgtatttaca
     6301 agcgaagtac tcatattaag agacagattt agctaatcaa gataattttt tgaggggata
     6361 ttaattgtat tttgaaaaaa actaatgatg agtagcttaa aaactagcct tagaatagaa
     6421 gcgttgaact gtgaatacag gttcttaaat tatgcttgta gttttggtag ctaacagtaa
     6481 tgagtgcagt cctcgtatgg ataagtctat ttttaaacga ctctacttat tttattggtc
     6541 atattcaata aatcagtctt aagacggata tgacttttag taatattggt tatactatac
     6601 ccaatcctaa atatttttca taatctcctg aaaagcccga tcgtgtgatc ag
//
LOCUS       DASFRC010000121         6455 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.121, whole genome shotgun sequence.
ACCESSION   DASFRC010000121 DASFRC010000000
VERSION     DASFRC010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6455)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6455)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6455
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.121"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(59..871)
                     /gene="purR"
                     /locus_tag="U1087_001659"
     CDS             complement(59..871)
                     /gene="purR"
                     /locus_tag="U1087_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pur operon repressor"
                     /protein_id="HEM4756120.1"
                     /translation="MKLRRSERMVVISNYLINHPYELTSLNTFAEKYESAKSSISEDI
                     AIIKKAFEESSIGHIETITGASGGVVFTPSISKAESVEIAQALRDQMAESNRILPGGY
                     IYSSDLLSTPHILKNVGRIIADAFKDEKIDAVMTVATKGVPLANAVANVLNVPFVIVR
                     RDLKITEGSTVSVNYVSGSSDRIEKMFLSKRSLKAGSRVLIVDDFLKNGGTINGMISL
                     LSEFDSTLVGVAVFAENQKGDRSVANYKSLLAVTDINVKENRVDVELGNIFD"
     gene            complement(962..1840)
                     /locus_tag="U1087_001660"
     CDS             complement(962..1840)
                     /locus_tag="U1087_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HEM4756121.1"
                     /translation="MTVKIVARESLTKGWSTDQKYQVQLEDGRLGLLRIAERPAYEAK
                     RLEFQLVEHLFGLGLPVAEPLSFWADDLSVYTLYEWVEGQDMNEVASSLSDSVLYDLG
                     CQSGQFLRTLHALPIDQSQRDWNSFYQAKIDSKLAAYQVASHSYPNVQAMIDFVQANR
                     HLLEGRPIAYHHGDFHTGNFLRGQNGRLKILDFDRHDIGDPWEEFNRLIFTADLSPAF
                     ARGQVDAYFDGAIPEEFWRLMALYVTVNSLGALSWAERVDPLQIPLMQEQAATISEWY
                     ADFTRWIPTWYLQVYS"
     gene            complement(1840..2781)
                     /locus_tag="U1087_001661"
     CDS             complement(1840..2781)
                     /locus_tag="U1087_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exoribonuclease YhaM family protein"
                     /protein_id="HEM4756122.1"
                     /translation="MKINQMKKDEFFEGFYLIKTAEVRQTRAGKDYLALTFQDDTGEI
                     EGKVWDAQPGKIKDFTAGTVVHMQGRREVYNNTPQVNQLVLRLPKAGEPNDPADFKEK
                     PPVDVKDTKDYLSQMIFRIENATWQRIVRALYSKYDKEFYSYPAAKINHHAFYSGLSY
                     HTATMVRLADKIGDIYPQLNKSLLFAGIMLHDLAKVIELTGPDNTGYTVRGNLIGHIS
                     LIDEEITKVLMELGIDDSLEEVTVLRHVILSHHGLLEYGSPVRPQIMEAEILHMIDNI
                     DAEMMMMLSALDKVGPGEMTNRIFAMDNRAFYKPNLD"
     gene            complement(2771..4009)
                     /gene="rmuC"
                     /locus_tag="U1087_001662"
     CDS             complement(2771..4009)
                     /gene="rmuC"
                     /locus_tag="U1087_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HEM4756123.1"
                     /translation="MDIVLLILLILVLLALVFLYGKWQSLALLLQDQAEDTADNLSDQ
                     LSYQLDNATLKQQQAIHQEVERLRTELYQQLTDIRQELNKSHLETRDATDRRLQAIQE
                     SNEKRLEEMRQTVEEKLEKTLQTRLQASFETVSKQLESVNRGLGEMQTVARDVGSLNK
                     VLSGTKTRGIMGELQLGQIIEDILTPSQYEREFATVSGSSERVEYAVKLPGRTEGDYI
                     YLPIDSKFPLADYYRLEDAYESGDKDQIDLHRKNLLAAIKRFAKDIQSKYLNPPETTN
                     FGVLFLPTEGLYSEVVRNPIFFDELRRQENIVVAGPTTLSALLSSLSVGFKTLNIQRS
                     ADDISKVLGNVKLEFGKFSDLLLKAQKQLNQASSNIDKLLTTRTNAIERSLRTIDLYE
                     DDQTKGLLGLSPLDEEDNEN"
     gene            complement(4010..4642)
                     /locus_tag="U1087_001663"
     CDS             complement(4010..4642)
                     /locus_tag="U1087_001663"
                     /EC_number="2.7.6.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine diphosphokinase"
                     /protein_id="HEM4756124.1"
                     /translation="MIKIAVIAGGSFDCLPEPADLYVGVDAGSLRLLDHFLPLDWAIG
                     DFDSVTSEELGQIREMAEWFLRAPVEKDDTDLELALKEIFKAYPQAQVRIYGALGGRM
                     DHMMANLFLAAEPDLAAFMEQIELVDSQNIVRFRPAGQHRLSPIAGMKYISFMPSDQS
                     RLTIRHAKYPLDASNYFFKKCYSSNEFIDRDIDIQLDQGYVVLIYSKDKD"
     gene            complement(4635..5294)
                     /locus_tag="U1087_001664"
     CDS             complement(4635..5294)
                     /locus_tag="U1087_001664"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002893879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEM4756125.1"
                     /translation="MSHYKIAPSILAADYANFEKELKRLEKTGVEYVHIDVMDGHFVP
                     NISFGADVVAAMRPHSKLVFDCHLMVSNPENHIEGFARAGADILTIHAEATVHLHGTL
                     QKIRAAGMKVGVVINPGTPLVTIEPVLNLVDQVLLMTVNPGFGGQAYIPEVAEKIEGL
                     VKLRENKGLNFDIEVDGGIDDKTIHSAKNAGANVFVAGSYLFKGDLDANVAKLRAALN
                     D"
     gene            complement(5309..6184)
                     /gene="rsgA"
                     /locus_tag="U1087_001665"
     CDS             complement(5309..6184)
                     /gene="rsgA"
                     /locus_tag="U1087_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HEM4756126.1"
                     /translation="MQGRIIKALAGFYYVEADGQIYQTRARGNFRKKGQTPYVGDFVD
                     FSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSAKEPDFNANLLDRFLVLLEQK
                     DMDPIIYISKMDLVEDRAEMDAFKAIYEKIGYPFVYSLEELTPLLQDKVTVFMGQTGV
                     GKSTLLNRIAPELALETGAISDSLGRGRHTTRAVSFYNVFGGKIADTPGFSSLDYEVK
                     EAEALTDCFPEIAEASQDCKFRTCTHSHDPDCAVKEAVASSAISQSRFDNYLQFLSEI
                     QNQRETYTKVSKKFK"
     gene            6309..6390
                     /locus_tag="U1087_001666"
     tRNA            6309..6390
                     /locus_tag="U1087_001666"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6342..6344,aa:Leu,seq:cag)
BASE COUNT         1739 a         1594 c         1398 g         1724 t
ORIGIN      
        1 caggttaagc cctagcatac aaacaacaaa aaacctctca tcaagagagg cttaacgatt
       61 aatcaaaaat attccccaac tctacatcga ctcgattttc cttgacattg atgtcggtca
      121 cagcgagcaa agacttgtag ttagctacgc tacggtcccc tttttggttt tctgcaaaga
      181 cagccacgcc taccaaggtt gagtcaaact cagagagcag gctaatcata ccattgatgg
      241 tgccaccatt tttcaagaaa tcatcgacga tcaagacacg gcttcctgcc ttcaaactac
      301 gcttagacag gaacatcttt tcgatgcggt cgctagatcc tgacacatag ttgacagaaa
      361 cagtagagcc ttctgtgatt ttcaaatcac gacgcacaat aacaaacggt acattaagga
      421 cattggcaac agcattggcc aagggcacac ctttggttgc aaccgtcatc actgcatcaa
      481 ttttttcatc tttaaaagcg tcagctatga tacgaccgac atttttcaaa atatgtggtg
      541 tagacagcaa gtcagatgaa tagatataac cgcctggcaa gatacgatta ctttcggcca
      601 tctgatcacg aagggcctgt gcaatttcga cagactctgc cttagagatt gatggagtaa
      661 aaacaactcc tccactggca ccagtaatgg tttcaatatg cccgatagag ctttcctcaa
      721 aagccttttt aatgatggca atatcctctg agatagacga cttggcagat tcatactttt
      781 ccgcaaaggt attcaaacta gttaattcat aagggtggtt gatgaggtaa ttggaaatga
      841 caaccatacg ctcacttctt cttaatttca tattgttctc ctttttggct ttttcctatt
      901 atagcacata aaaacacaaa aagcgaacct ttttttcttg aaaaagttcg ctttttcgta
      961 tttagctata aacttgtaga taccacgttg gaatccagcg agtaaagtcc gcataccatt
     1021 ctgagatggt ggccgcctgt tcctgcatca aggggatttg gaggggatct acgcgctctg
     1081 cccaagaaag agcgcctaga ctatttactg ttacataaag agccatgagt ctccaaaatt
     1141 cctctggaat agcgccgtca aaataggcat ctacctgacc acgcgcaaag gctggagaca
     1201 aatctgccgt gaaaatcaaa cggttgaatt cttcccaggg atctcctata tcatgtcgat
     1261 caaagtctaa aattttcagt cttccattct ggccccgtag aaagttccct gtatgaaaat
     1321 caccatgatg gtaggcaatt ggtcttccct caagcaagtg acgattagcc tgaacaaagt
     1381 ctatcatagc ctgaacattt ggataggaat gactagctac ttggtaggca gctaatttac
     1441 tgtcaatctt agcctgataa aaactgttcc agtcccgttg gctttggtca atcggtaggg
     1501 catgcaaggt tcgcaaaaac tgccctgact gacagcccaa atcatataag acagaatcag
     1561 acaaactaga agccacttca ttcatatcct gaccctccac ccattcataa agggtgtaga
     1621 ctgacaagtc atccgcccaa aaacttagtg gctctgccac aggcaaacct aaaccaaaca
     1681 ggtgttcaac taattgaaac tctaatcgct tagcctcata ggctggccgc tctgctattc
     1741 tcaacagacc aaggcgacca tcttctagct gaacctggta cttttggtcc gtggaccagc
     1801 cttttgtgag gctctcacgt gcgactatct tcacggtcat cagtctaggt ttggcttgta
     1861 gaaggcacgg ttatccatgg caaagatgcg gttggtcatc tcgcctgggc caaccttgtc
     1921 caaggccgat agcatcatca tcatttccgc atcgatgttg tcaatcatgt ggaggatttc
     1981 cgcctccata atctgcggac ggacagggct tccatactcc aagaggccat ggtggctgag
     2041 gataacgtgg cgcagaacag tcacttcctc cagactgtca tcgatgccca attccatcaa
     2101 gaccttggta atctcttcat caatcaagga aatgtgccca atcagattgc cacggacagt
     2161 gtagcctgtg ttatcagggc ctgtcagttc aatcaccttg gctaggtcat gaagcataat
     2221 tcctgcgaaa agcaggctct tgttgagctg aggataaata tcaccaattt tatctgccaa
     2281 acgcaccata gtcgccgtgt gataggacag accagaataa aaagcgtggt ggttgatctt
     2341 ggcagctgga taggaataaa attccttgtc gtacttgctg tagagagcac ggacaatccg
     2401 ctgccaagtg gcattttcaa tgcggaaaat catctggctc aaatagtcct tggtgtcctt
     2461 gacatccaca ggtggttttt ccttgaaatc agcagggtcg ttgggttcgc ctgcctttgg
     2521 caaacgcaga accagttgat tgacctgggg ggtgttgttg taaacctcac ggcgcccctg
     2581 catgtgaaca actgtcccag cagtaaagtc cttgattttc cctggttgag catcccagac
     2641 cttgccttca atctcgcccg tatcatcctg gaaggtcaga gctaggtagt cttttccagc
     2701 ccgtgtttga cggacttcag ctgtcttgat cagatagaat ccttcgaaga attcatcttt
     2761 tttcatttgg ttaattttca ttatcttcct catctaatgg ggacaggcca agcagtccct
     2821 tggtttggtc atcttcgtat aggtcaatgg tccgaagact acgctcgata gcgttggtgc
     2881 gagtggttag gagtttgtca atattgctgc tggcttgatt gagttgtttc tgagccttaa
     2941 gcaagaggtc agaaaacttg ccaaattcca gcttgacatt gcccaagact ttggaaatat
     3001 catcggccga ccgttgaatg ttgagggtct taaagccgac ggagagggaa ctgagcaggg
     3061 cagacagggt ggtcggtcca gctaccacga tattttcctg acgacgaagc tcatcaaaga
     3121 aaatgggatt gcggaccact tctgaataga gtccctcagt tggcaagaac aacacaccaa
     3181 aattagtcgt ttcaggcgga ttgaggtact tgctctgaat atctttagca aagcgcttga
     3241 tagcagccaa gagatttttg cgatggaggt caatctggtc cttgtcccca ctttcgtagg
     3301 catcttccaa gcgataatag tccgccaacg gaaacttgga atcgattggc aagtagatat
     3361 agtctccttc cgtccgtcct ggtagcttga ccgcatactc cacgcgctca ctagagcctg
     3421 aaactgtggc aaactctcgc tcatattggc taggtgtcaa aatatcctcg ataatctgtc
     3481 ccagctgtaa ctcacccatg atgccacggg ttttggtacc agacagaacc ttgttcagac
     3541 tgcccacatc acgtgctacc gtctgcattt cgcccagacc acgattgacc gattccaatt
     3601 gcttggacac cgtttcaaag gaggcttgta ggcgggtttg cagggttttc tccagctttt
     3661 cctcaaccgt ctgccgcatt tcttctaggc gtttttcatt agactcctga atggcctgca
     3721 aacggcggtc ggtggcatct cgcgtttcca agtggctctt attcagctct tgacggatgt
     3781 cggttagctg ttggtaaagc tccgtgcgga gtctttccac ctcctgatga atggcttgct
     3841 gctgtttgag agttgcgtta tctagttgat agctgagctg gtcagacaag ttgtctgctg
     3901 tatcttcggc ttgatcttgc aaaagcaggg ccaagctctg ccattttcca taaagaaaaa
     3961 ccaaggcaag caagaccagt atcagcaaaa taagtaatac aatatccatc taatccttgt
     4021 ccttactgta gatcaggacc acgtagccct gatccagttg aatgtctata tctctatcta
     4081 taaattcgtt agaggaatag cattttttga aaaaataatt gctggcatcc agcgggtact
     4141 tggcatgacg aatggtcagg cgactctggt ccgacggcat aaaggaaatg tacttcatac
     4201 cagcaatcgg tgacaaacgg tgctgacctg caggtcgaaa tcggacgatg ttctgactgt
     4261 ccaccaattc gatctgctcc ataaaggcag ccaagtcagg ctctgcagcc agaaagagat
     4321 tggccatcat gtggtccatg cggccaccca aagctccata tatgcgaacc tgggcctgcg
     4381 gataggcctt gaagatttcc tttaaagcca gctccaaatc tgtatcatct ttttcaacag
     4441 gagctcgcag aaaccactct gccatctccc ttatctgccc caactcctca gaggtcaccg
     4501 agtcaaaatc accgatagcc cagtcaagag gcagaaaatg gtccagaaga cgaagagagc
     4561 ctgcatctac ccccacatag aggtcggcag gctcaggaag gcagtcaaag gaaccgcctg
     4621 caatgacagc aatcttaatc attgagggca gctctcaatt tggcaacgtt ggcatccaaa
     4681 tcgcctttga agaggtagga accagccaca aagacattgg cacccgcatt tttggctgaa
     4741 tgaatggtct tgtcgtcaat cccgccgtcc acttcaatat caaagttcaa acccttgttt
     4801 tcacggagct tgaccaagcc ctctatcttc tccgccactt ctggaatgta ggcttgtcca
     4861 ccaaaacctg ggttgaccgt catgagcaga acctgatcca ctaagttgag cacaggctca
     4921 atggtcacaa gcggtgtacc tggattgatg acaacaccca ccttcatacc agctgcacga
     4981 attttttgca gtgttccatg caggtgaacc gttgcttctg catgaatggt taaaatatct
     5041 gcacccgcac gggcgaagcc ttcgatatga ttttcaggat tggacaccat aagatggcaa
     5101 tcaaaaacca gcttgctatg aggacgcatg gccgcaacca catccgcccc aaagctgata
     5161 tttggcacaa agtgaccatc catgacatca atgtgcacat actccacacc tgtcttttct
     5221 agacgcttga gctctttttc aaaatttgca taatctgccg ccaaaataga cggggcaatc
     5281 ttataatgtg acatagagta ccaactttct atttgaattt cttacttacc ttggtatagg
     5341 tttcacgctg attttggatt tcgctgagga attggagata attgtcaaag cgactttggg
     5401 aaatggcaga gctggcaaca gcttccttga ccgcacaatc cggatcatgg gaatgggtac
     5461 aggtcctaaa tttgcagtcc tgactggctt ccgcaatctc tggaaaacaa tctgtcagag
     5521 cctccgcctc cttgacttca tagtctaggg atgaaaaacc tggcgtatcc gcaattttcc
     5581 caccgaagac attgtagaag ctgaccgcac gagtggtatg gcgaccacgc cccagactat
     5641 ctgaaatcgc ccctgtttcc aaggctaatt ctggtgcaat gcggttgaga agagtcgact
     5701 tgccaacccc tgtctgcccc ataaagaccg tcaccttatc ctgcaataat ggcgtcaatt
     5761 cctccaaact atagacaaaa ggatagccaa ttttctcata gatagccttg aaggcatcca
     5821 tctccgcccg atcttctacc aaatccatct tagagatata gataatggga tccatatcct
     5881 tctgttcaag gagaactagg aaacgatcca gtagattggc attaaaatca ggttccttgg
     5941 ccgacatgat aaccaccgcc tgatcgatat tgacgatagg aggtcgaacc aaactatttt
     6001 tccgctcatg aatctttaat atatagcctt ctgagttttc ctccgcagaa aagtccacaa
     6061 aatcacccac gtagggcgtt tgtcccttct tacgaaaatt tcctctggct ctggtttgat
     6121 aaatctgtcc atccgcctcg acatagtaaa aacctgccaa ggccttgata attcttcctt
     6181 gcaatgaaga ctcctttgtg tgtacttgct actattatac caaatttcct acaaaaaaac
     6241 cgcaagcggt ttcgatttta cattttcctc tagtcatttc aatgtaaaaa tagtataata
     6301 aaaagcaagc ggaggtggtg gaacggcaga cacgcatgct tcaggcgcat gtgcccatcg
     6361 ggtgtgaggg ttcaaatccc ttcctccgca ttatttataa aggataactc caagtcaaag
     6421 ttgatgactt gggggcattt ttatatcttc tcgct
//
LOCUS       DASFRC010000122         6419 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.122, whole genome shotgun sequence.
ACCESSION   DASFRC010000122 DASFRC010000000
VERSION     DASFRC010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6419)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6419)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6419
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.122"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            287..586
                     /locus_tag="U1087_001667"
     CDS             287..586
                     /locus_tag="U1087_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein"
                     /protein_id="HEM4756127.1"
                     /translation="MLNAKDLRKLKRSELFELLVEQAKEIESYQAKLVDLEKRIEYRE
                     VVLGEIGSIVEASLAVTRIFEEAQLAANIYLEQVQKVTHKQSDNCEIGRIDEDGD"
     gene            576..1178
                     /gene="lepB"
                     /locus_tag="U1087_001668"
     CDS             576..1178
                     /gene="lepB"
                     /locus_tag="U1087_001668"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEM4756128.1"
                     /translation="MVTNKNKDYVTISDLPSISIMSEELDKIRYKERYLETLKNTIFT
                     LVTVAALAVLIAMLWLLVLHIYGSSMSPTLEAGDMVATVKTNTLSTGDMVAFYYNNKV
                     LVKRVVATSGQWVNIDEQGNVYVNGKTLDEPYVKDKAYGQTDIKLPYQVPEGQYFVMG
                     DHRSVSIDSRNTAIGSIGEEQLVGKLTFRIWPFHKMGVIK"
     gene            1203..1583
                     /locus_tag="U1087_001669"
                     /pseudo
     CDS             1203..1583
                     /locus_tag="U1087_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922052.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1584..1973)
                     /locus_tag="U1087_001670"
                     /pseudo
     CDS             complement(1584..1973)
                     /locus_tag="U1087_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558050.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            1941..2732
                     /locus_tag="U1087_001671"
     CDS             1941..2732
                     /locus_tag="U1087_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018363760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class C sortase"
                     /protein_id="HEM4756129.1"
                     /translation="MASQIRHDLSLLVFFLITGLLLLLYPTVSDYWNSHYQSEAVATY
                     SEKLLDISKEEKQKILENVSAYNNMLEKGTIPNLNIDSVALKKYDSILNITDTGIMGY
                     VEIPKLQTTLPIYHGTDDAVLQVAVGHAAISGHRGLPSAKLFSDSDQLVIGDTFMIQV
                     LDNTLTYEIDKIITVTPDDVSPLMIDPNEDFVTLVTCTPYGVNSHRLLVRGHRIENQL
                     LTKQVVSEGSIVKPILVSPFIALCLLGLLWSLFFYKKRSKFVYVT"
     gene            2858..3034
                     /locus_tag="U1087_001672"
                     /pseudo
     CDS             2858..3034
                     /locus_tag="U1087_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003104139.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
     gene            3134..3544
                     /locus_tag="U1087_001673"
     CDS             3134..3544
                     /locus_tag="U1087_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM4756130.1"
                     /translation="MNIKEVSDVTGLSADTIRYYERIGLIPKIARKSSGVRNFSESDV
                     AILEFIRCFRSAGMSIERLIEYMGLVQAGDSTVEARIDLLKEEQEELRSRLSEIQQAL
                     DRLDYKIENYQTILRGAENQLFTDGSGSCKKDRE"
     gene            complement(3567..3881)
                     /locus_tag="U1087_001674"
     CDS             complement(3567..3881)
                     /locus_tag="U1087_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3270 domain-containing protein"
                     /protein_id="HEM4756131.1"
                     /translation="MALRHYQSHEYQYEEYIPKEKKANFQTYQAKNANKERLKELLFF
                     VNIAFFSLITVIASYVYLSVGIPVFIAIILASATGFLGLRLVQIGLKKKFKPKQVIRK
                     NE"
     gene            4042..4971
                     /locus_tag="U1087_001675"
     CDS             4042..4971
                     /locus_tag="U1087_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012997850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HEM4756132.1"
                     /translation="MEKIIITATAESIEQVKELLAAGVDRIYVGEEDHALRIPTNFTY
                     DELREIAELVHSAGKELTVAANALMHQDMMDNIKPFMELMREIKVDYLVVGDTGIFYI
                     NKRDGYNFKLIYDTSVFVTSSRQINFWKDHGAVEAVLAREIPSEELFDIAKNLEMPAE
                     ILVYGASVIHHSKRTLLQNYYNFTKADETDLSRGRGLFLAEPSDPDSHYSIFEDKHGT
                     HIFINNDIDMMTKLSELDEHGYHNWKLDGIYCPGQNFVEIVKLFVQARDLIEKGDFTY
                     DQAFLLDEQVRKLHPAERGLDTGFYEFDRNKVK"
     gene            5089..6375
                     /locus_tag="U1087_001676"
     CDS             5089..6375
                     /locus_tag="U1087_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015057417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HEM4756133.1"
                     /translation="MSKTLKRPEVLSPAGTLEKLKVAIDYGADAVFVGGQAYGLRSRA
                     GNFTMDEMREGIEYAHARGAKVYVAANMVTHEGNEEGAGAWFRELRDMGLDAVIVSDP
                     ALIVICATEAPGLEIHLSTQASSTNYETFEFWKELGLTRVVLAREVTMEEVAEIRKRT
                     DVEIEAFVHGAMCISYSGRCVLSNHMSKRDANRGGCSQSCRWKYNLYDLPFGEERRSI
                     KGEIPEEFSMSAVDMCMIDHIPDMIENGVDSLKIEGRMKSVHYVSTVTNCYKAAVDAY
                     LESPEKFEAIKQDLIDEMWKVAQRELATGFYYSPPSENEQLFGARRKIPEYKFIAEVV
                     AFDKETMTATIRQRNVINEGDQVEFYGPGFRHFETTIQDMHDSNGEKIDRANKPMELL
                     TIKLDREIYPGDMIRACKSGLINLYQEDGQSLTIRA"
BASE COUNT         2039 a         1118 c         1381 g         1881 t
ORIGIN      
        1 ttatattaat ggaattgttt gagaaatcaa aaggatgtag tttttcgatt tgcatacata
       61 ttttaactta aacatatgtg tgcaaaaagt tctgattttt tgtgtttttt aagaaattgg
      121 cattgttgac aaactaagga ttggcttggt atcatgcaca ggctaatttg attgtattat
      181 atttgtaaaa atgtatatgt tttgattgat aggtgatatt tagaagtaaa caagcatata
      241 ttttgtagcg aaagcaatat cagcaaaaag gagagaggag gaagcaatgt taaatgcaaa
      301 agaccttaga aaactgaagc gttctgaatt atttgaactc ttggttgagc aggcaaagga
      361 aatagagtct tatcaagcaa aattagtaga tttggaaaaa agaattgagt atcgcgaagt
      421 ggttttggga gaaattggtt cgatagtgga ggcgtctcta gcagttacta ggatttttga
      481 agaagcacaa ttagctgcaa atatttatct tgaacaggtt caaaaagtta cacataaaca
      541 atctgataat tgtgaaatag ggagaataga tgaggatggt gactaataaa aataaggatt
      601 atgttactat atcagattta cccagtatat caataatgtc agaggagctg gataaaatac
      661 gatataaaga gcggtatctt gagacattaa aaaatactat tttcacgctt gttactgtcg
      721 ctgcacttgc agtattaata gccatgttat ggttgctagt tctgcatatt tatggaagtt
      781 ctatgtctcc tactctggaa gcaggtgata tggtggcaac tgtgaagaca aatacacttt
      841 caactggaga tatggttgca ttctactaca ataataaggt tttggtaaaa agagtagtag
      901 caacttctgg tcagtgggta aatatagatg agcaggggaa tgtttatgta aatggaaaaa
      961 cattagacga accctatgtt aaagataagg cctatggtca aactgatatt aaactaccgt
     1021 accaggttcc agaaggtcaa tattttgtaa tgggagatca tcgcagtgta tctattgatt
     1081 ctagaaatac agctattggg tcgattggtg aggagcaact ggttggaaag ttaacctttc
     1141 ggatatggcc atttcataaa atgggagtaa tcaaataaag gaaggagata taaaaaaata
     1201 aaatattata ggagagattg tttaaatttg ttcagcaata ctttcgagag aaaaagactg
     1261 caaaaataac tatgtcattg tcaataatta tggcttttgg aatatcatat ttgctgattt
     1321 taccagccat tactttagag acagacagtc aggagagtgt tctgcaatca gtctataatc
     1381 agccatcaac agtagaacag ccagttcaag aagaacaggc ggagtcacag ttagcacagg
     1441 ttcaatctgc tggaagctta ttcgctgaac atgaaaatat aactgtacaa gttaactatg
     1501 aggagcatac atttgaacag ccagttcggt tacaggtttt accctcagaa gatagtacaa
     1561 aatatattgg acttgttcgg taactacatc atctcatggt tgatgatacc acaaatcaac
     1621 tcagttctta attcaaaccg ttttctacga ttacgatagg gctgtgccat gatttgaaag
     1681 gttttaaatt tggcattaaa gtgttcaact tcaatacgga ttttagctat ctctcgattc
     1741 aaccctctat cctcttcggt taagaggtga tgtttagaac gtttagcagg aataaaggta
     1801 ttttcgtgaa atttcaagat gcctaaatac cctaaatcta cgaaaacaag ggtattttgg
     1861 ggcaaactat agccaatact ctccttaaaa agggtaaaat catgcgtatg accatctgaa
     1921 aaagccaatt gacaagcacg atggctagtc aaatcaggca tgatttgagt ctgctagtct
     1981 ttttcttaat aactgggcta ttattgttat tatatccaac agtaagtgat tattggaact
     2041 cacattatca atcagaagca gtagctactt attctgagaa attattggat atttcaaaag
     2101 aagaaaaaca aaaaatttta gaaaatgtca gtgcatataa caacatgctc gaaaagggga
     2161 caatacctaa tttaaatata gacagtgtag ctttaaaaaa gtatgactca attttaaata
     2221 tcacagatac tggtattatg ggctatgtag aaattcctaa gttgcagaca acgttaccta
     2281 tttatcacgg aacggatgat gccgtattgc aggtagcagt aggtcacgct gctatttcag
     2341 gacatcgggg attgccttct gcaaaactgt tttctgattc agatcagctg gttatagggg
     2401 acacatttat gatacaagtt ttagataaca ctctgacata cgaaattgat aaaattatta
     2461 cggttactcc agatgatgta tctcctttga tgatagatcc gaatgaggat ttcgtaaccc
     2521 ttgtgacttg cacaccttat ggtgttaata gccaccgatt attagttaga ggtcatcgaa
     2581 ttgaaaatca actacttact aagcaagtag tctcagaggg atcaattgta aaacctatat
     2641 tggtttctcc ttttattgct ttatgtttat taggactact ttggagttta tttttttata
     2701 aaaaaagaag taaatttgtt tatgtgactt agatagtatc gcaaagaatg tcaaactatt
     2761 cgactttgtt ctttagcttt taagcttagg aaagggaggt ttttccaact cccaatcatc
     2821 caaaaggtga aatagaagat aaactaaatg acgatatatc aatgtcctct atacgctaga
     2881 agaaggaggt aaacgagctg tcggattcaa attgtcagac ggcattgaca ttcccaaaga
     2941 atttgaaggc aaattcaagt ttgcccgcca acgctccaaa ctagctggcg aaattcgtgg
     3001 caccttcttt gttgtcaagg gcgagtattt ataggatggc aaatctgggg aaacccagat
     3061 tttttaaata atgacttgac ctggagtgga cttcaaggtg tataataagc gaaaacaaag
     3121 aaaggagcct ggaatgaata tcaaagaagt tagtgatgta acaggtctat cagcagatac
     3181 cattcgctac tatgagcgga taggacttat tcccaaaatt gcaagaaaat cttctggagt
     3241 aaggaacttt tcggaaagtg atgtagctat tttggaattt atccgctgtt ttaggagtgc
     3301 tggtatgtct attgagcgct tgattgagta tatgggcttg gtgcaggcag gagatagtac
     3361 agtggaagct cggattgatt tactaaaaga ggaacaggaa gaactgcggt cacgcttgtc
     3421 ggaaattcag caagctctag atcgtttaga ttataaaata gaaaattacc agactatatt
     3481 aagaggtgca gaaaatcaat tgtttacaga cggcagtggt tcatgcaaaa aagacagaga
     3541 ataactttct ctgtcttcat acttcattat tcattttttc tgataacttg tttgggttta
     3601 aatttcttct ttagtccaat ttgaaccaaa cgtagtccaa gaaaacccgt cgcacttgcc
     3661 aatatgatgg caataaaaac aggaatgcct acagacagat agacataact agcgatgact
     3721 gttatcaaac taaaaaatgc gatattaaca aaaaacaaca attcctttag acgttcttta
     3781 ttggcatttt ttgcttgata ggtttgaaaa ttagcctttt tctctttcgg gatatactct
     3841 tcgtactggt actcatggga ctgatagtgt cttaatgcca tatcgtctcc ttttctgctc
     3901 cttaaagaat accataacat tgctgaattt ttatgtcatt tatattacaa taatgttaca
     3961 agagaaagat tagaaaagtc tgaacattaa aatacaggta gtcacttatc agatatttct
     4021 ctttttgata taattatctt tatggaaaaa attatcatta cagcaacagc tgaaagtatt
     4081 gagcaggtca aagaactgct tgcagcagga gttgaccgta tttatgttgg ggaagaggac
     4141 catgccctgc gcatcccaac aaattttacc tatgatgaac tcagggaaat agcagagcta
     4201 gttcatagcg ctgggaagga attgacggtc gctgccaatg ccctcatgca ccaagatatg
     4261 atggacaata tcaaaccgtt tatggagcta atgagggaaa tcaaggttga ttatctggtt
     4321 gtcggagata ctggaatttt ctatatcaat aaacgtgatg gctacaattt caagctaatc
     4381 tatgatacat ctgtctttgt gacttccagc cgtcagatta acttttggaa agatcatgga
     4441 gcagtagagg ctgttttggc aagagagatt ccatcagaag aactctttga tattgctaag
     4501 aacttggaaa tgccagcgga aatcttggtc tacggcgcct ctgttattca ccattctaaa
     4561 cgaaccttgt tacagaatta ctacaatttt acaaaggctg atgagacaga tttgtcacgt
     4621 ggacgcggac ttttcttagc tgagccgagc gacccagata gccactattc catttttgaa
     4681 gataagcatg gcacccatat ctttatcaac aatgacattg atatgatgac caagttgtcg
     4741 gaattagatg aacatggtta tcataattgg aaacttgatg gtatctattg ccctggtcag
     4801 aactttgtgg aaattgttaa gctttttgtt caagcaagag atttgattga aaaaggcgac
     4861 ttcacttatg atcaggcctt ccttttggat gaacaggtac gcaagctcca tccagctgaa
     4921 cgtggcttgg atacaggctt ctacgaattt gaccgcaata aggttaaata acaatattta
     4981 tcgcacaatt tatttacttt aacctggcag agttggctct gtcctaggtt gccgagtgaa
     5041 acaacatcgt ttacagtatt ctatcctgca aatagaaaga agtatattat gtcaaaaaca
     5101 ttaaagcgtc ccgaggtctt gtcacctgct gggactttgg agaaattgaa ggttgccatt
     5161 gattatggtg ctgatgctgt ctttgttggc ggccaggcct acggtctgcg tagccgggct
     5221 ggtaacttta ccatggacga gatgcgggaa gggattgaat acgcccacgc ccgtggtgcc
     5281 aaggtctatg tggctgccaa catggtcacc cacgaaggta atgaagaagg agcaggagcc
     5341 tggttccgtg aattgcgtga catgggcttg gatgccgtta tcgtatccga cccagccctc
     5401 atcgttatct gtgctactga agcgccaggc cttgaaatcc acctgtctac ccaggcttca
     5461 tcaaccaact atgagacctt cgagttctgg aaggaattgg gcttgactcg tgtcgtcctg
     5521 gcccgcgaag tgactatgga agaggtggct gaaatccgta aacggacaga cgttgaaatc
     5581 gaagcctttg tccacggtgc catgtgtatt tcctattcag gtcgctgcgt tctctctaac
     5641 cacatgagca aacgcgatgc taaccgcggt ggctgctccc agtcttgccg ttggaagtac
     5701 aacctctacg acctcccatt tggtgaagaa cgccgttcga ttaaggggga aatcccagag
     5761 gagttctcca tgtctgcagt ggacatgtgt atgatcgacc atattccaga tatgattgaa
     5821 aacggggtcg atagcctgaa aatcgaaggc cgtatgaaat ctgtccacta cgtatcaaca
     5881 gtgaccaact gctacaaggc tgcggtagat gcctatcttg aaagcccaga aaagtttgaa
     5941 gcgatcaagc aagacctgat tgatgagatg tggaaggttg cccaacgtga attggcgaca
     6001 ggtttctact atagcccgcc gagtgaaaat gagcagctct ttggagcccg ccgtaagatt
     6061 ccagaataca aatttatcgc cgaagtagtg gcttttgaca aggaaaccat gactgcaacc
     6121 attcgtcagc gtaatgttat caacgaaggt gaccaagtag agttttacgg accaggtttc
     6181 cgtcattttg aaacgactat tcaggacatg catgattcaa atggagaaaa gattgaccgt
     6241 gccaacaagc cgatggaact cttaactatt aagctggacc gtgaaatcta tcctggtgac
     6301 atgattcgtg cctgcaaatc aggcctcatc aacctctacc aagaagatgg gcaatctcta
     6361 actattcgtg cataaacata aaaaggctga aatttcagct tcagaacgta gataaactc
//
LOCUS       DASFRC010000123         6385 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.123, whole genome shotgun sequence.
ACCESSION   DASFRC010000123 DASFRC010000000
VERSION     DASFRC010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6385)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6385)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6385
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.123"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            8..493
                     /locus_tag="U1087_001677"
                     /pseudo
     CDS             8..493
                     /locus_tag="U1087_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636750.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            628..1194
                     /locus_tag="U1087_001678"
     CDS             628..1194
                     /locus_tag="U1087_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017647560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756134.1"
                     /translation="MKPKKNIIVPIKIVPRTGTHTFDDVIEQGYCRRLSKYIPDAVIG
                     GFYIYNSKDALPYAKKLKNTIYGKNLSVGYLARLLDVWHRACQLFHITTGSCLADDIF
                     TSKKINNESYYYRGNISDFITDKILDRVQENHRSFSRKANKDIIFAVECEFDVNPDFY
                     HYVINRLGWTKFKYSYLVKAVAGALSEA"
     gene            1246..1482
                     /locus_tag="U1087_001679"
     CDS             1246..1482
                     /locus_tag="U1087_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756135.1"
                     /translation="MKIYKFMFNITYPALVISLYIIFQMKGTMSPWFDTLFVAGGFLV
                     IPLLLLLLGYLSENDHGGTDNEANQAESCSTSEV"
     gene            1439..2803
                     /locus_tag="U1087_001680"
     CDS             1439..2803
                     /locus_tag="U1087_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001242574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HEM4756136.1"
                     /translation="MKLIKLNHAVRVRFNPYIITSKRLFLSRVGMDLFLGMLLINTWV
                     SPYSIPIKSVLSLIFIGIICSIEKFFKSVFISKIQNILYVRESLFDMLIGLNLYEESD
                     NVVTNSATLNFEILPNNIVMVEVPLFGNKFLKLLKNLDEYLIPTLGLPLISKQEFPDY
                     VIYRLGNIEEIQQYVFNSHTLTKEFFEDIPSPIIKLSNTQQFSLKSNTNLGIYGRTGT
                     GKTIALQWYLFNALAKGCGTTDHTYLGVVDGKGADLFALGKLLQEELGEQIAVGSSPQ
                     MLAKLSREFVDIMNERFEIIERNSTLNADAYDLEMTPNFLFVDELASIRDSCGSSKQG
                     KELWNEILQNLGLIARKGRQAGCHLCLSTQDPNAENIPVELRNQISAVLYLGNIGDDR
                     LKMAFSMCELENVPTISDRKGEALFYADGLNSAEPVLTIVPFVDVKTKQDFLQVVRNI
                     LPNY"
     gene            2803..3066
                     /locus_tag="U1087_001681"
     CDS             2803..3066
                     /locus_tag="U1087_001681"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756137.1"
                     /translation="MTVFRTREIGTIAQGAESSGAFLFSLVRKSPPTAFFAGGRKNTP
                     VLIGGAHIHEMYSKPLIRKGLRLVGYTEVIETLVGEGIESLFV"
     gene            3103..3522
                     /locus_tag="U1087_001682"
     CDS             3103..3522
                     /locus_tag="U1087_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756138.1"
                     /translation="MTYNMTDTTLKIGQLDLDMTQFEVPKKIVILSAKVNNRYNEVNG
                     EKIKTEEVTKITCTALDADKVKVLTEMGISTDDLKAINLEIVGNVDKVATLAQNESLL
                     NVPIELVKPKVRLAWNMARSNWAGVKLVCEDIKILGA"
     gene            3527..4543
                     /locus_tag="U1087_001683"
     CDS             3527..4543
                     /locus_tag="U1087_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="HEM4756139.1"
                     /translation="MNTVRIDYFAVTVKNISPESVLTDILLIPLEDFTLNNWGINKYQ
                     RHYACSEIKVYFNEDRTSMGVFIELKGQGCRQYEEFLDGNENNWIALIGRLYQYSVNF
                     TRLDIAHDIFDGSLDVQRVYDYCKKGLCISKAKHFEYHEKSVLENGERVGETVAIGSR
                     GNQQWCIYNKRMEQLSKQELVEYPSWIRAELRCWQDKANIIAEQLFLKRPLSSIYFEA
                     INGHYRFVKPNATDTNRWRRKKVKWWLDYLKTENQTVLSVERTKPTLRQSEAWTEKQV
                     AKTLAKVYTAKYQAYDVQKAEDYIQGLLKEGLSRLTDNDEKDIEQYIREQNSSPLWGQ
                     KKTT"
     gene            4604..4810
                     /locus_tag="U1087_001684"
     CDS             4604..4810
                     /locus_tag="U1087_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3173 domain-containing protein"
                     /protein_id="HEM4756140.1"
                     /translation="MIATVNKNDLVALGFSEGTSKRIIRQGKELLIARGFRVYQNKRV
                     GTIPASIATELLGFDVSLGAHHDS"
     gene            4800..5933
                     /locus_tag="U1087_001685"
     CDS             4800..5933
                     /locus_tag="U1087_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000155506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEM4756141.1"
                     /translation="MTVKKAKNGTWTVDISDGFHPVTKKRIRIIRKGFKTKKEALELE
                     QYIRVVELKEKRFDFLVTTDMLFDILEEEDRQNNRKISYISTQRNNYERHIKPYFINT
                     NLNKLSYEHIFEFREYLKIKPKKQNDSSTLSHNTVNKIMILLKKIFDTGVRKSLIDKN
                     PVENIRKLPISKPTINFWNVEEFNEFRKLITSDEISYDLFFTIAFFTGMRLGEIVALT
                     WYDINLITNSIHITKTAYFVNGTNHINSTKTRAGTRRITINHKLARMLADWKEKQKDL
                     LKEFTTDTENLQVIQSTPLPMTKNMIDKKFKQILARNDYLKKIRIHDLRHSHASLLIN
                     QGEDYLVVKERLGHASITTTIDTYSHLYPSKQKTLANKLDDIF"
     gene            complement(6020..6103)
                     /locus_tag="U1087_001686"
     tRNA            complement(6020..6103)
                     /locus_tag="U1087_001686"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6067..6069),aa:Leu,seq:caa)
     gene            complement(6115..6186)
                     /locus_tag="U1087_001687"
     tRNA            complement(6115..6186)
                     /locus_tag="U1087_001687"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6152..6154),aa:Gln,seq:ttg)
     gene            complement(6198..6270)
                     /locus_tag="U1087_001688"
     tRNA            complement(6198..6270)
                     /locus_tag="U1087_001688"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6235..6237),aa:His,seq:gtg)
     gene            complement(6278..6348)
                     /locus_tag="U1087_001689"
     tRNA            complement(6278..6348)
                     /locus_tag="U1087_001689"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6314..6316),aa:Trp,seq:cca)
BASE COUNT         2221 a         1024 c         1249 g         1891 t
ORIGIN      
        1 taacagaatt ttttattttg gaattttttt ggtatttttg cttgacaaat tcaggaaaaa
       61 tgataaaatt taggtagacg attatataaa ggagctggtt attatgagat tgcaattgag
      121 attatctcaa gatgctaaaa taattctaga aaaagaaaag cttaagcgac tagaaaataa
      181 tggtgtaatt gctacttatg gagatatcat tgaagaaatt tgcaaaaatt ttagagagag
      241 attaaacgaa atagattggc tatttgtaaa aaatcaacct ttatatgaaa aggtaatttc
      301 ttcttacacc tctctatcac cttctgcatt aacattatct gatgaaacga tacttgtctt
      361 agatgagtta acagctattc tcaattctat acttaatatg aagcgaacag tgtatcgttc
      421 atttactgta agaataattt taaaagcatt tgctttagaa caaaaagata ttagtattag
      481 ttatgttgac taatatttat attttacagt attgggtaga cgattatata aaaaggagaa
      541 aaaatatgaa ttctagagct tcaccaatac ttatttaaga atactgactg tgacaataaa
      601 atagagaaag agaaatgagg taataatatg aagcctaaaa agaatatcat agtaccaata
      661 aagatagtcc caagaactgg aactcatacc tttgacgacg ttatcgaaca agggtattgc
      721 cgtaggctat caaaatacat tcccgatgca gttattgggg gattctacat atacaattca
      781 aaagatgcat taccatatgc aaaaaagctt aaaaatacta tttatggtaa gaatttatcc
      841 gttgggtatc tagcgagatt gcttgatgtg tggcatagag cttgtcagtt attccatatt
      901 acaacaggtt catgtttggc tgatgacatt ttcacttcaa aaaaaattaa caatgagtcc
      961 tattattaca ggggcaatat ctcggatttt atcactgata agattctaga ccgtgttcaa
     1021 gagaatcacc gctccttctc aagaaaagcc aataaagata ttatttttgc tgttgaatgt
     1081 gaatttgatg taaatcctga cttttatcat tatgttataa atagactagg gtggactaaa
     1141 tttaaatata gctacttagt taaggctgtt gcaggggcgt tatccgaggc ttagaattaa
     1201 ggggagctac cccctcccct tttggtttta tgaaaggaaa ttattatgaa aatttataaa
     1261 tttatgttca acataaccta tcctgctcta gttatttctt tgtatattat attccagatg
     1321 aaagggacga tgtctccgtg gtttgatact ttgtttgtag ctggaggttt tttagttatt
     1381 ccacttttat tgttattgtt gggttattta tcagaaaatg accacggagg gacagataat
     1441 gaagctaatc aagctgaatc atgcagtacg agtgaggttt aatccttata taataacctc
     1501 taaaagattg tttttgagca gagtcggaat ggatttattt ttaggaatgt tattgataaa
     1561 cacttgggtt tctccatact caattcctat taaatcagtg ctttcattga tatttattgg
     1621 aataatttgt tctattgaaa aattttttaa gtctgttttt atatcaaaaa ttcaaaatat
     1681 actgtatgtt agagaatctc tatttgatat gctgattggt ctaaatttat acgaagaaag
     1741 tgataatgta gtaaccaata gtgcaacatt aaactttgaa atcttgccca ataatattgt
     1801 aatggtcgaa gtaccattgt ttgggaataa gtttttaaaa cttcttaaaa acctagacga
     1861 gtatcttata ccaacattag gactgcctct aatatcaaaa caagaattcc ctgattatgt
     1921 tatttataga ctcggtaaca tagaagaaat tcaacagtat gttttcaata gccatacatt
     1981 gactaaagaa ttttttgaag atattcctag tccaataatc aagctatcaa atactcagca
     2041 atttagtcta aaatcaaata ctaatctcgg gatttacggt cgaacaggaa cagggaagac
     2101 aatagctcta caatggtact tatttaatgc actggctaaa ggttgtggca ctactgacca
     2161 tacttatttg ggagtggttg atggtaaggg cgctgattta tttgcccttg gtaaacttct
     2221 tcaagaagaa ttaggggagc aaatagcagt aggctcttca cctcaaatgt tagcaaaatt
     2281 atcaagagaa tttgttgata ttatgaatga gcgttttgaa attattgagc gaaacagcac
     2341 actaaatgca gatgcctatg acttagaaat gacaccaaac tttctatttg ttgatgaact
     2401 cgcttctatt cgtgatagtt gtggttctag taaacaaggt aaagagctat ggaatgaaat
     2461 tctgcaaaac ttaggcttga ttgcacgcaa aggacggcag gcaggttgcc acctctgcct
     2521 tagtacccaa gacccaaatg cagagaatat tcctgttgaa cttagaaacc aaatatcagc
     2581 agttttatac cttggaaata taggggacga ccgattgaaa atggctttta gtatgtgtga
     2641 actggaaaat gttcctacaa tttcagatag aaaaggcgaa gcactctttt atgctgacgg
     2701 tttaaattct gctgagcctg tacttactat cgtcccgttc gtcgatgtta aaacaaaaca
     2761 agatttttta caggtagtta gaaatatact gccaaactac taatgacggt ctttcggact
     2821 agagaaatag ggacgattgc ccagggggca gaatcgagcg gagcgttcct cttttcgcta
     2881 gtccgaaaga gcccaccgac tgctttcttt gcaggaggtc ggaaaaatac cccagtacta
     2941 atagggggtg cacacataca tgaaatgtac tctaaaccct tgatacgtaa ggggttacgg
     3001 cttgttggtt ataccgaagt cattgaaacc cttgtgggag aagggattga gtcgcttttc
     3061 gtgtaggata cgactttttg aatagaaaat ggagtaatta ttatgactta caatatgaca
     3121 gatactaccc ttaagattgg gcaacttgat ttggatatga cacagtttga agtgccgaaa
     3181 aaaattgtta ttctatctgc taaagtaaat aataggtata acgaggttaa tggcgagaaa
     3241 atcaaaactg aagaagttac gaaaatcact tgtactgccc ttgatgccga taaagtgaaa
     3301 gttctaactg aaatgggaat ttctactgat gacttgaaag ctatcaacct agaaattgta
     3361 ggtaatgtag ataaggttgc tacgctcgct caaaatgaat cacttttgaa tgttccgatt
     3421 gagttggtta agccgaaagt tcgtttagct tggaacatgg cacgaagtaa ctgggcaggt
     3481 gttaaattag tatgtgagga cattaaaatt ctaggagcat aaccctatga atacagtcag
     3541 aattgattat tttgcagtaa ccgttaaaaa tatttctcca gaaagtgttt taactgatat
     3601 tcttttaatt cctttagaag atttcacatt aaataattgg ggaataaaca agtaccagcg
     3661 acattatgct tgttctgaga ttaaagtgta ctttaatgag gatagaactt caatgggggt
     3721 ttttatcgaa ttaaaagggc aaggttgtcg ccaatatgaa gaatttttgg acggtaacga
     3781 aaataattgg atagctttga taggtcggtt gtatcagtat tcggttaatt ttactcgctt
     3841 agatattgct cacgacatat ttgacggtag tttagatgtt cagcgagtat atgactattg
     3901 caagaaaggt ttatgtatct cgaaagcaaa gcattttgag tatcatgaga aatctgtctt
     3961 agaaaatgga gaacgagttg gagagacggt tgctataggt tccagaggta atcaacaatg
     4021 gtgtatctac aataaacgta tggaacaact tagcaagcaa gagcttgtag aatatccctc
     4081 atggattcgt gcggaactta gatgttggca ggataaggcg aatattattg cagagcaatt
     4141 gtttctaaag cgtcctctgt catctatcta ttttgaagct atcaatggtc actatcgttt
     4201 tgtgaaacca aatgcgacag atactaatcg ttggagaaga aaaaaggtca agtggtggct
     4261 agactatcta aagaccgaaa atcagactgt tttgagcgtt gagagaacta agcctacatt
     4321 acggcagtca gaggcttgga cagagaaaca agttgcgaag acattggcaa aagtctatac
     4381 agcaaaatat caagcctatg atgttcaaaa ggcagaggac tacattcaag gtctactaaa
     4441 agagggcttg tcaaggctaa ctgataatga tgaaaaggat atagagcaat atattcgaga
     4501 gcagaatagt tctcccttat ggggacaaaa aaagacgact tgaaaacaag tcgcctctaa
     4561 aaattaacta actagattat aacaaaagaa aggaaagtgt ccaatgatag caaccgtaaa
     4621 taagaatgac ctagttgccc ttggtttctc tgaaggaact tctaaacgta tcatcagaca
     4681 ggggaaagag cttctaatag caagaggatt tagggtttat caaaataagc gtgtcggaac
     4741 tatccctgct tctatcgcta ctgaattact tggttttgac gtttctttag gtgctcatca
     4801 tgacagttaa gaaagcaaaa aatggaactt ggactgttga tatttctgac ggcttccacc
     4861 cagttaccaa aaagcggata cgaatcattc gtaaaggttt caagacaaag aaagaagctt
     4921 tagagttaga acaatatatc cgtgttgttg agttaaaaga aaaacgtttt gattttttgg
     4981 taacaaccga tatgctcttc gatatacttg aggaagaaga ccgacaaaat aacagaaaaa
     5041 tcagttatat cagcacacaa agaaacaact atgagcgaca tatcaaacct tacttcataa
     5101 atacaaactt aaataaatta tcttatgagc acatttttga atttcgagag tatctcaaaa
     5161 taaagcccaa aaagcaaaac gatagctcta cgttaagtca taatacagtc aataaaataa
     5221 tgatactcct caaaaagatt tttgatactg gtgtaagaaa gtcattgata gataaaaatc
     5281 cagttgaaaa tataagaaaa ttgcctatta gtaagccaac tataaatttt tggaatgtag
     5341 aagaatttaa cgaatttaga aaacttatta caagtgatga aataagttac gacctattct
     5401 ttacgattgc cttttttact ggcatgcgat tgggcgagat agttgcgtta acttggtacg
     5461 atataaactt aatcactaat agcattcaca tcacaaaaac agcatatttt gttaacggta
     5521 caaatcatat caatagtaca aaaactagag caggtaccag acgtattaca atcaatcata
     5581 aattagcaag aatgcttgca gactggaaag aaaaacaaaa agacttactt aaagaattta
     5641 caacagatac agaaaacctt caagtgattc aaagcacacc actaccaatg acaaaaaata
     5701 tgattgataa aaaatttaag cagatactgg ctaggaacga ctatctaaaa aagatacgaa
     5761 tacacgattt aaggcactct cacgcgtctt tacttatcaa tcaaggggaa gattatctag
     5821 tcgtaaaaga acgtcttgga cacgcctcta tcacgactac aatagataca tattcccact
     5881 tataccctag taaacaaaag acattggcga acaaattgga cgatattttt tagaaaatgg
     5941 aattttttgg caacttgaaa aagagcaata gaaaagataa aacaaaagac aaggcttaga
     6001 aaccttgtct ttataactat accggcggcc ggggtcgaac cggcacgtcc ttgcggacac
     6061 tggattttga gtccagcgcg tctgccaatt ccgccacgcc ggcatatagt tgaactgggg
     6121 tagctggatt cgaaccaacg catgagggag tcaaagtccc ttgccttacc gcttggcgat
     6181 accccaatat taaaataggc gagtgagggg aatcgaaccc ccgaatgtca gagccacaat
     6241 ctgatgtgtt aaccacttca ccacacccgc catataacac gggcagtagg aattgaaccc
     6301 acactgaagg ttttggagac cttagttcta cctttaaact atgcccgtaa aggtatggag
     6361 agagagggat tcgaaccccc gaacc
//
LOCUS       DASFRC010000124         6381 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.124, whole genome shotgun sequence.
ACCESSION   DASFRC010000124 DASFRC010000000
VERSION     DASFRC010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6381)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6381)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6381
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.124"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            515..832
                     /locus_tag="U1087_001690"
     CDS             515..832
                     /locus_tag="U1087_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose transporter subunit IIB"
                     /protein_id="HEM4756142.1"
                     /translation="MQALTKTTWYPLVKKVAAVIGVKITKKTVEKTIANAVPILGGLI
                     SGGLTYFTFQSMGGMLADTFVKKINGDFDGELELTEAFKASLEEEKELGIIEAEFTEA
                     SES"
     gene            912..2255
                     /locus_tag="U1087_001691"
     CDS             912..2255
                     /locus_tag="U1087_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007517532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM4756143.1"
                     /translation="MKFTDMKLKPYIQEALKEINFVQPTEVQEKLIPVVLSGRDLIGE
                     SKTGSGKTHTFLIPIFQKLNEELDQVQAVITAPSRELATQVYQAARQLASHSDIEVRV
                     TNYVGGTDKNRQIDKLQASQPHIVVGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLD
                     MGFLETVDKIAGSLPKDLQFMVFSATIPQKLQPFLKKYLSNPVMEQIKTHTVISDTIE
                     NWLISTKGRDRNAQILEVTKLMQPYLAMIFVNTKTRADELHSYLTANGLRVAKIHGDI
                     PPRERKRMMNQVKNLDYQYIVATDLAARGIDIEGVSHVINDTIPQDLSFFVHRVGRTG
                     RNGLSGIAITLYQPSDDADIRELEKLNIKFLPKEMKNGEFVDTYDRDRRANREKSREK
                     LDLEMIGLVKKKKKKVKPGYKKKIQWAVDEKRRKTKRVEARAKGRAERKAKRQTF"
     gene            2273..2509
                     /locus_tag="U1087_001692"
     CDS             2273..2509
                     /locus_tag="U1087_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4059 family protein"
                     /protein_id="HEM4756144.1"
                     /translation="MLQNILSFYLQGLLIASLLIITSSLVWFIWRATKGVDKTLQERQ
                     DFLFDFLFDLLMINVMTIPIAAFGVVGILLMFKA"
     gene            2523..3440
                     /gene="trxB"
                     /locus_tag="U1087_001693"
     CDS             2523..3440
                     /gene="trxB"
                     /locus_tag="U1087_001693"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HEM4756145.1"
                     /translation="MYDTVVIGAGPAGMTAALYAGRSNLKVALLERGIYGGQMNNTAE
                     IENYPGYDHISGPALAEKMFEPLEKFGVDHIFGTLVRIEEEGQIKKVITEDGVLETKT
                     VVLAMGAKHRLLGIPGEDTYNSRGVSYCAVCDGAFFRGQKLLVVGGGDSAVEEALFLT
                     QFAESVTIVHRRDQLRAQKVIQDRAFANEKINFIWDSVVEEIKGDDLRVQSVVIKNVK
                     TEEVSELDFGGVFIYVGLDPMTDSVADLGITDEAGWVITNEKMETTQSGIYAIGDIRQ
                     NQLRQIATAVGNGAVAGQEVYNYITELAE"
     gene            3449..4015
                     /locus_tag="U1087_001694"
     CDS             3449..4015
                     /locus_tag="U1087_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HEM4756146.1"
                     /translation="MFHIYDIQKNPDGISFDKTLDLQEELQARNGEVLGLSPVQVTGN
                     IRFESGFFFLDYQMTYDITLASSRSLKPVVLHEVQNVNELFVANEAVLKEQDLIDEDM
                     VLVVEDDHIVLVVEDDHIVLDESVADNILLAIPIKVLTPEEEAGQELPSGQAWALMTE
                     EDFQQKAQEKKEANSPFAQLQGLFDSEE"
     gene            4103..5530
                     /gene="gndA"
                     /locus_tag="U1087_001695"
     CDS             4103..5530
                     /gene="gndA"
                     /locus_tag="U1087_001695"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent phosphogluconate dehydrogenase"
                     /protein_id="HEM4756147.1"
                     /translation="MTKANFGVVGMAVMGRNLALNVESRGCSVAIYNRSADKTEDVVA
                     SNPGKNLVPSYDVESFVASIEKPRRIMLMVQAGPGTDATIQALLPHLDEGDILIDGGN
                     TFYEDTIRRSKELANSGINFIGTGVSGGEKGALEGPSIMPGGQKEAYELVADVLEEIS
                     AKAPEDGAPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAESYDLMQHLLGLSVDEMAD
                     IFTEWNKGELDSYLIEITADILKRKDDQGQDGPIVDYILDAAGNKGTGKWTSQSSLDL
                     GVPLSLITESVFARYISTYKDERVAASKVLPKPAPFAYEGDKAELVEKIRQALYFSKI
                     MSYAQGFAQLRVASKENNWNLPFGEIAKIWRAGCIIRARFLQKITDAYGRDEDLANLL
                     LDEYFLDVTAKYQQAVRDVVALAVQAGVPVPTFSAAITYFDSYRAENLPANLIQAQRD
                     YFGAHTYNRKDKEGIFHYDWYSESK"
     gene            5612..6301
                     /locus_tag="U1087_001696"
     CDS             5612..6301
                     /locus_tag="U1087_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEM4756148.1"
                     /translation="MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHE
                     TDFDLILMSFQLSDMSSKELATELLAIKPATVMIVVVEPTEVSQYGEEVLSYAVSYVV
                     KPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
                     REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIK
                     TVRGVGYAMRD"
BASE COUNT         1918 a         1157 c         1503 g         1803 t
ORIGIN      
        1 ggaacaattc aatcaagaac agttatatgg agtggttatt caaaccatga cagctgctag
       61 tcaacttcct atggttaaag tcaatcggga agaatttttg aagactcgtt ttaaagatag
      121 tccctatcta gataaaatta ttgcggatgg accaacggcg gtcttcacta caaaagcttt
      181 gcgtaaagaa gctgaaaaaa tcattaatga tatgactacg aaaacatctt tgatttcttt
      241 cgcagctggt ttaccgggga atccatttac agcggtggcg gcaggtactg ctgatatagc
      301 tcagtatttt ggttttgcct tgaatttgtc gcaacaaatc gcttatcttt ttggtgaaga
      361 tgaattattt gttggtgaag ggaaggaaat ttcagaagag gttcaaatcc gcattattgc
      421 ctacattggt gtcatgtttg gagcaggtgg ttcagcagtt cttctcaata aagtatccaa
      481 gacagtcgga gctaatatcg gtaaaaaagt agctatgcag gctttgacca agacaacttg
      541 gtatcccttg gtgaaaaagg tagccgcagt gattggtgtg aaaattacca aaaagactgt
      601 tgaaaagacg attgccaatg cagttcctat tttgggtggt ctaatttcag gaggtttgac
      661 ctattttacc ttccagtcca tgggagggat gttggcagac acatttgtga aaaaaataaa
      721 tggtgatttt gatggcgaat tagaactcac tgaggccttt aaagcaagtt tggaagaaga
      781 gaaggaactt ggaattattg aggcagaatt tactgaagca agtgagagtt gattaggacg
      841 ggtatccgtc ctttttgctt gtccacctaa atcgtgctat aatagagggc agtacaacta
      901 aagagggaac tatgaaattt acagatatga aactcaagcc ttatattcag gaggctttga
      961 aagaaattaa ctttgtccaa ccgacagaag ttcaggagaa attgattcca gttgttttgt
     1021 cagggcgaga cttgataggg gaatcaaaaa caggttcggg taagacccat accttcttga
     1081 tcccgatttt ccaaaaatta aatgaggaat tggaccaagt tcaggctgtt attacagccc
     1141 catctcgtga actggctact caggtttatc aagcggcacg ccagttggct agtcattcgg
     1201 acatcgaggt tcgtgtgacc aattatgttg gcggtacgga taagaaccgt caaattgaca
     1261 agcttcaagc tagtcagcct cacattgttg ttgggacacc agggcgtatc tatgatttgg
     1321 tcaaatcagg tgaccttgct atccataaag caaaaacctt tgtggtggat gaggcagata
     1381 tgaccttgga catgggcttt ttagaaacag ttgataagat tgctggtagc ctgccaaaag
     1441 acttgcaatt tatggtcttt tcagcgacca ttccgcagaa actccaaccg tttttgaaaa
     1501 aatacttgtc caatccagtc atggaacaaa tcaagaccca tacggtcatt tcagatacca
     1561 ttgaaaactg gctgatttca accaaggggc gtgaccgtaa tgctcaaatc ttggaagtaa
     1621 ccaagctcat gcaaccttac ttggccatga tttttgtcaa tacaaagaca cgtgcagatg
     1681 aattgcatag ctatttgact gcgaacggtc ttcgtgtcgc aaagattcat ggggatattc
     1741 ctccacgtga gcgcaagcgg atgatgaacc aggtgaaaaa cttggactat cagtacattg
     1801 ttgcaactga tttagcagca cgtgggattg atattgaggg cgtcagtcat gtcatcaatg
     1861 atactattcc acaagacctt tccttctttg ttcaccgtgt ggggcgcaca ggtcgtaatg
     1921 gtttatcagg tattgccatt accctttatc agccaagcga tgatgcagat attcgagagc
     1981 tagaaaaact caatatcaaa ttcttgccaa aagaaatgaa aaatggcgaa tttgtcgata
     2041 cctacgaccg tgaccgccgt gctaaccgtg aaaaatctcg tgaaaaacta gatttggaaa
     2101 tgattggctt ggtcaagaag aaaaagaaaa aagtcaaacc aggctacaag aagaaaatac
     2161 aatgggctgt tgatgaaaaa cgtcgcaaga ccaagcgagt tgaagcgcgt gcaaagggtc
     2221 gtgcagaacg taaagccaag cgtcaaacct tttaaagtaa tcgaggaaaa agatgttaca
     2281 aaacattcta agtttttatt tacaaggatt gctaatagct tccttgttga ttatcacttc
     2341 tagtctggtc tggtttatct ggcgtgcgac aaagggtgtg gataaaacct tgcaagaacg
     2401 acaagatttc ttgtttgatt tcttgtttga tttgttgatg attaatgtga tgacaatccc
     2461 cattgcagcc tttggagtag tgggaatctt attaatgttt aaagcgtaga aggaaaaagt
     2521 atatgtacga tacagttgta attggtgcgg gtcctgcggg gatgactgca gctctttatg
     2581 cagggcgtag caatttaaag gtagctcttt tggaacgtgg tatttatggt ggtcagatga
     2641 ataatactgc ggaaattgaa aactatccag gctatgacca tatttcaggt ccagccttgg
     2701 ctgaaaaaat gtttgaaccc ttggaaaaat tcggtgtgga ccatattttt ggcaccctag
     2761 tccgtattga ggaagaagga caaattaaga aagtgattac tgaggatggt gttttggaga
     2821 caaagacagt cgttctagcc atgggtgcaa aacaccgttt gttaggtatt ccaggtgagg
     2881 atacttacaa tagccgtggt gtctcatatt gtgcagtctg tgacggtgcc ttcttccgtg
     2941 gacaaaaact cttggttgtc ggtggtggag attctgcggt cgaagaagct ctcttcttaa
     3001 cacaatttgc ggagtctgtg acaattgttc accgccgtga tcagcttcgt gctcaaaaag
     3061 tcatccaaga ccgcgctttt gccaatgaaa aaattaactt catctgggat agtgtagtcg
     3121 aagaaatcaa gggtgatgac ttacgtgtac aaagcgtggt tatcaaaaat gtgaaaacag
     3181 aggaagtcag cgaactggac ttcggtggtg tctttatcta tgtcggtttg gatccgatga
     3241 cggattcggt tgccgatttg gggattacgg acgaagctgg ttgggttatc actaatgaaa
     3301 agatggagac gactcaatca ggcatctatg ccatcggtga tattcgtcaa aatcaacttc
     3361 gtcagattgc aacggcagta ggaaatggtg cagttgctgg acaagaagtc tataactaca
     3421 tcacagaact agctgaatag gggaatacat gtttcatatt tacgatattc agaaaaatcc
     3481 agatggaatc tcctttgata aaaccttgga tttacaggaa gaattgcaag ctcgaaatgg
     3541 tgaagttcta ggcttgtcgc cagtccaagt cactggaaat atccgctttg aatcaggttt
     3601 ctttttcttg gactatcaga tgacttatga tattaccttg gcatccagtc gttctctgaa
     3661 accagttgtt ttgcatgagg tccaaaacgt caatgaactt tttgttgcca atgaagcagt
     3721 tcttaaagaa caagatttga ttgatgagga tatggtactg gtagtagaag atgaccacat
     3781 tgtcctggta gtagaagatg accacattgt ccttgatgag agtgtagcag acaatatttt
     3841 actggctata ccaatcaaag tcttgacacc tgaagaagaa gctggacagg aactaccatc
     3901 tggtcaagct tgggctttaa tgactgaaga agattttcaa caaaaagctc aagagaaaaa
     3961 agaggccaat agtccttttg ctcaattgca gggcttgttt gatagtgaag aatagtttgg
     4021 atagttaaat tatctgaaaa ttcttgtcaa ctttcccctt tcggtgtata atgaaaggga
     4081 tacaaattag aggagtaaac aaatgactaa agcaaatttt ggtgttgtag gaatggccgt
     4141 tatgggccgc aaccttgcgc ttaacgttga atcacgtggc tgttcagtag ctatttacaa
     4201 ccgctctgct gataaaacag aagatgttgt tgcaagcaac ccaggtaaaa acttggtacc
     4261 aagttacgat gtggaaagct ttgtggcatc tatcgaaaaa ccacgtcgca tcatgcttat
     4321 ggttcaagct ggtcctggta cagatgcaac cattcaagca ctcttaccac acttggatga
     4381 aggtgacatc ttgattgatg gtgggaatac tttctacgaa gacactatcc gtcgttctaa
     4441 agaattggca aactccggca ttaacttcat cggtacaggt gtatctggtg gtgaaaaagg
     4501 agctcttgaa ggtccatcta tcatgcctgg tggtcaaaaa gaagcctacg aattggtagc
     4561 agatgtcttg gaagaaattt cagcaaaagc gccagaagat ggagcaccat gtgtgactta
     4621 tatcggtcca gatggtgctg gtcactatgt aaaaatggta cacaacggta tcgagtatgg
     4681 tgatatgcaa ttgattgcgg agtcttatga cctcatgcaa cacttactcg gtttgtcagt
     4741 ggatgaaatg gctgacattt tcactgagtg gaacaaaggc gaattggata gctacttgat
     4801 tgaaatcaca gcagatattt tgaaacgtaa agacgatcaa ggtcaagatg gaccaatcgt
     4861 tgattacatt ttggatgcgg ctggtaacaa gggaactggt aaatggacaa gtcaatcatc
     4921 acttgacttg ggtgtgccat tgtcattgat tacagaatct gtatttgctc gttatatctc
     4981 aacctacaaa gatgagcgtg tagcagcaag caaggtcctt ccaaaaccag ctccgtttgc
     5041 atacgaaggc gacaaggctg aattggtaga aaaaatccgt caagcattgt acttctcaaa
     5101 aatcatgtct tatgcacaag gttttgcaca gttgcgcgta gcatcaaaag aaaacaactg
     5161 gaacttgcca tttggtgaaa tcgcaaaaat ctggcgtgca ggttgtatca tccgcgctcg
     5221 cttcttgcaa aaaatcacag atgcctacgg acgtgatgaa gacttggcaa acttgctctt
     5281 ggatgagtac ttccttgatg taacagctaa gtatcaacag gcagttcgtg atgttgttgc
     5341 cttggcagtt caagcaggag ttcctgtacc aacattctca gcagctatta cctacttcga
     5401 tagctaccgt gctgaaaact tgccagcgaa cttgattcaa gcacaacgtg actactttgg
     5461 tgctcacact tataaccgta aagataaaga aggaatcttc cattacgact ggtatagcga
     5521 atcaaaatag aaaagatggg cgtggaagcg cccttctttc tagtcataat acgattccta
     5581 caccatttga aagaatagaa aaggatggac aatggctaag aaaattttga ttgctggtaa
     5641 agaacgcaat ctctcgcatt ttgtttccat ggaattgcag aaaaaagact atcttgttga
     5701 ttatgcatcg acagggaaag aggctatgtc cttggcacat gaaacggatt ttgatttgat
     5761 tctgatgagt tttcagcttt cagacatgtc cagcaaggaa ttggctacag aactattagc
     5821 gataaaacca gccacggtca tgattgtggt agttgagccg acagaagtta gtcaatatgg
     5881 ggaagaagtc ctctcttatg ctgtttccta cgtagtgaag ccctttgtca tcagtgattt
     5941 agtggagcaa atctctgcga tttttcgtgg tcgtgatttt attgacaata attgtaaaca
     6001 ggttcacatg catgcggcct atcgtgattt gaaggttgat tttcaaaatc gaacagtgac
     6061 tcgaggtgat gaattgatta atttgacccg ccgagagtat gatctgctgg ctaccttaat
     6121 gaacagtcca gaacctgtta gtcgagaaca acttcttgag cgtgtttgga aatatgaagc
     6181 ggcttctgag accaatgtcg tcgatgtata tattcgctat ctacgtggta aactggattt
     6241 gccacatcaa gattcatata taaaaacagt tcgtggtgtc ggatatgcca tgcgcgattg
     6301 atttagagta gagtggaggg agtgagaaag aactctattt ttcaaaaatg agttcgtcaa
     6361 caagtcttta tttctagttg t
//
LOCUS       DASFRC010000125         6255 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.125, whole genome shotgun sequence.
ACCESSION   DASFRC010000125 DASFRC010000000
VERSION     DASFRC010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6255)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6255)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6255
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.125"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..596
                     /locus_tag="U1087_001697"
     CDS             <1..596
                     /locus_tag="U1087_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003059255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA polymerase"
                     /protein_id="HEM4756149.1"
                     /translation="KVGVQLWFHANGVDESNVHEPYKPKSRGLGNSQVLPRDYRTQRE
                     IEIVLAEMADQVANRLRSAHKKATVISIHISYSRTEVKKSINAQKKIDPANLPKTMVG
                     HVLELFRKKYTSGAVRQIGVSYSGFVDENYTLLSLFDDVEQIEKDNRLQTAIDVVREQ
                     FGFLAIQKGTVLTEGSRNIERSKLIGGHSAGGLEGLK"
     gene            593..961
                     /locus_tag="U1087_001698"
     CDS             593..961
                     /locus_tag="U1087_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004254363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756150.1"
                     /translation="MIDRSYLPFQSAREYQDTKMQKWMGFFLSEHTSALSDDINKVTY
                     MSDLSMEKKLLLLSQVYAGQLNTRIHVVEKNNRISYTGTIPSLTKDFILIKTPTGHIN
                     LKLKDIVSIELVEEVLYESA"
     gene            948..1262
                     /locus_tag="U1087_001699"
     CDS             948..1262
                     /locus_tag="U1087_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018378996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756151.1"
                     /translation="MNQLEFQRNHLQMDYYSESYQDFERDFYRYSNMNIPLTFLTDDI
                     LKTMATSRKNYFVLNKEKARDNRDHFFLFEISTIDENPLIYRYSYKKTTTYLTQKQEQ
                     FN"
     gene            complement(1300..2070)
                     /locus_tag="U1087_001700"
     CDS             complement(1300..2070)
                     /locus_tag="U1087_001700"
                     /inference="COORDINATES: protein motif:HMM:NF013577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HEM4756152.1"
                     /translation="MIYGKLPVVFLGLLASEKNGSTNSIIASYILEHLEDMKDIGIQQ
                     FAEDCNVSTSSISRFCRDVGLESFSELKMILNQVNLQKGPEASQGCFQDRKKSYTELT
                     QSGIQQVSDSLNEFEVYELVQDIIKYEKVATFGLMKAETAALILQSDLLMYGKQIFSN
                     LSFKEQTDYILNADEQHLIILFSFTSSYFDYAPLKPFLQKKKHPKIWMVTGGNTNAPS
                     FVHKCLRFKSTQNHFEHPSQLDFVATIIAQEYNFLNKK"
     gene            complement(2083..2640)
                     /locus_tag="U1087_001701"
     CDS             complement(2083..2640)
                     /locus_tag="U1087_001701"
                     /inference="COORDINATES: protein motif:HMM:TIGR01383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HEM4756153.1"
                     /translation="MVKVAVLMAEGYEEGETLTIVDILRRAEIETTTFHFGDDEFVKG
                     MHNMYIKADKKFGSEVYEYDVVVLPGGRPGGANLLANPDVIKLVQDFNTTEGKYIGAM
                     CSGTVVLSEAKVIDGKDVTGYTGYAEKLIGGNFKEDVVVFDQNIITSQGPATPYPFAY
                     KIAEVLGKDTAVLRERMLYNFAGGR"
     gene            complement(2633..3205)
                     /locus_tag="U1087_001702"
     CDS             complement(2633..3205)
                     /locus_tag="U1087_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001140921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HEM4756154.1"
                     /translation="MVKVAVLVAPGFEEGETLTIVDIIRRANIECELVGIDEIVTGAH
                     DITVKCDAVLDANLSGEYDMVVLPGGRPGADNLRDNKLVIKAINEMDAEGKWVAAMCA
                     APIALEQAGILENRNYTAYVGYQDFIKVGNFKEDIVVVDKNLVTSRGPATAYEFAYAL
                     VDVLGGDSIAVKKRMVYTNAFDVEEGKVYG"
     gene            complement(3283..4696)
                     /gene="ascB"
                     /locus_tag="U1087_001703"
                     /pseudo
     CDS             complement(3283..4696)
                     /gene="ascB"
                     /locus_tag="U1087_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937725.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
     gene            complement(4717..>6255)
                     /locus_tag="U1087_001704"
     CDS             complement(4717..>6255)
                     /locus_tag="U1087_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019780896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HEM4756155.1"
                     /translation="NIIARVVEAISGCFGPVIPVLIGCGMVKSVAAILTTLNLVDPTS
                     GTYQIISLIGDLLFYFFPFFLAVSAAKKFKTHEFLAVALAGALMYPTIQNGALQAAET
                     GVNSLSFLGLPVLFVNYKSTIIPIILSVWIMSYVYKWVNKLIPDTFKVLFVPMIVLFI
                     MVPLELIVIGPFGTYLGQGVAKVVSYLYTTNGVLGALLFGTFRPLLIIFGMHYAITPI
                     NAQLIAEYGYSVISPANLTGNLAQAGATLATFFFLKKKSEKAEALSAGVTALFGVTEP
                     AMFGFNLKYKKPMICAMIAGGIGAAYINFWSGGATAVILPGLLALPTYIADNYIHIII
                     GISISIALAMIGTLVFGIGSKPKADDTTIVSATKLDVKPFAKGEVVELNKVNDAVFST
                     GVMGNGFAIVPTEGKVFAPFAGKVTMVFETKHAIGLRSDNGVEVLVHIGLDTVNLKGE
                     HFNVRIKEGDTIEAGQLLVEFDLEKLKELGYDTIIPFIVTNGAEFAQVTPKLSSDSIE
                     FALA"
BASE COUNT         2063 a         1298 c          970 g         1924 t
ORIGIN      
        1 gtaaagtcgg tgttcaactt tggtttcacg ccaatggagt tgatgagagt aacgtccatg
       61 aaccctataa accaaaatca cgaggattgg gtaactcaca agtacttcct agagattaca
      121 gaacccaaag ggaaattgaa atcgtattag ctgaaatggc tgaccaggtt gctaatcgac
      181 tgcgttcagc ccataagaaa gcaactgtta tttcaatcca tattagctat tctaggactg
      241 aggtgaaaaa atctataaat gcacagaaaa aaatcgaccc cgcaaatctc ccaaaaacaa
      301 tggtgggcca tgtacttgaa ttattccgaa agaaatacac ctctggtgca gtgagacaaa
      361 ttggtgtatc ttatagtggc ttcgtagatg aaaactatac tctactatca ctctttgatg
      421 atgtagaaca aattgaaaaa gataatagac ttcagacagc tattgatgtt gtcagagaac
      481 agtttggctt tttagccata caaaaaggaa ccgtcctaac tgaaggttcc agaaatattg
      541 aacgcagtaa acttatcggc ggtcattccg ctggtggatt ggagggatta aaatgattga
      601 ccgttcatac ttaccatttc agtcagcaag agagtaccag gatacaaaga tgcaaaaatg
      661 gatgggcttt ttcctatctg agcatacatc agcactctct gatgatataa acaaagtaac
      721 gtacatgtca gatttgtcaa tggagaagaa attattactc ctcagtcagg tgtatgctgg
      781 gcaactgaac acgcgcattc atgtcgttga aaaaaacaat cgaatttcct atactggtac
      841 aataccaagt ctgaccaaag atttcatatt aataaaaact ccaacaggtc acattaattt
      901 gaaattgaaa gacattgtta gtattgaact tgtagaggag gtgctctatg aatcagcttg
      961 aatttcagcg taatcacctg caaatggact attacagcga gagctaccaa gattttgaac
     1021 gtgacttcta ccgctactcc aatatgaata ttccattgac ctttctgact gatgatatcc
     1081 tcaaaacaat ggcaacttct cgtaagaatt actttgtcct aaataaggaa aaggctagag
     1141 ataatcgcga tcacttcttc ctatttgaga taagtaccat agatgagaat ccgctaatct
     1201 accgctattc ttacaagaaa acaactacct acttaacaca aaaacaggag cagttcaatt
     1261 gactgctcct gtttgtaatt accaacattt tgctaaaact cattttttat ttaaaaaatt
     1321 atactcttga gcaataatcg tcgcaacaaa atctaattgg ctcggatgtt cgaaatgatt
     1381 ctgtgtcgat ttaaatctta aacatttatg aacaaatgaa ggagcattag tgtttccacc
     1441 agttaccatc caaatcttcg ggtgtttctt tttttgtaaa aaaggtttta aaggagcata
     1501 atcaaaataa gaacttgtaa aagaaaacaa aataattaga tgttgctcat cagcatttag
     1561 tatgtaatca gtttgctctt taaaagacaa atttgaaaaa atctgttttc catacatcag
     1621 taagtcactt tgtaaaatga gtgcagcagt ttcagccttc atcaatccaa atgttgctac
     1681 tttttcatac ttaataatgt cttggactaa ctcataaact tcaaattcat ttagagaatc
     1741 tgaaacttgc tgtattccag attgagtcaa ttctgtatat gattttttcc gatcttgaaa
     1801 acaaccttga ctagcttcgg gtcctttttg taaattgact tgattcaaaa tcatttttaa
     1861 ttctgaaaag ctctcaaggc ctacatctcg acaaaatctt gagatagacg aggtagaaac
     1921 attacaatct tctgcaaatt gctgaatacc aatatccttc atatcttcaa gatgttccag
     1981 tatataactt gcaattatac tattcgtaga accattcttt tcacttgcta aaagccccaa
     2041 gaagacaact ggtaattttc cataaatcat atctgctctt ttctaacgac caccagcaaa
     2101 attatacaac attcgttctc ttaatacagc cgtatcttta ccgagtactt cagcgatttt
     2161 atatgcgaat ggatatggag tagctggtcc ttggcttgta ataatatttt ggtcaaaaac
     2221 tacaacatct tccttgaagt ttccaccaat tagtttctct gcataaccag tataacctgt
     2281 gacatcctta ccgtcaataa cttttgcttc agaaagaaca actgttcctg aacacattgc
     2341 tccaatatat tttccttcag tggtattgaa atcttgaacc aattttatta catcaggatt
     2401 tgctaataga tttgcaccac ctggccgtcc ccctggtaga acaactacat catattcata
     2461 cacttcagaa ccaaattttt tgtccgcttt gatatacata ttgtgcatac ctttgacaaa
     2521 ttcatcatct ccaaaatgga atgtagttgt ttcaatctcc gcacgtctta ggatatcaac
     2581 gatagttaat gtttccccct cttcatagcc ttctgccatc aatactgcta ccttaaccat
     2641 agactttacc ctcctcaaca tcaaatgcat ttgtataaac cattcgtttt ttcactgcaa
     2701 tagaatcacc acctagaaca tcaactagcg cataggcaaa ctcataggca gtagctggtc
     2761 cacgactggt aactaaattt ttatcaacaa ccacaatatc ttctttgaaa ttaccgactt
     2821 tgataaaatc ttggtaacct acatatgcag tataatttcg gttttcaagg ataccagctt
     2881 gttctaaagc aattggtgct gcacacatag ctgcaaccca ttttccttct gcatccatct
     2941 cattaattgc tttaattacc aacttattat ctcttagatt gtctgcacct ggacgacctc
     3001 caggtaatac aaccatatcg tattcacctg aaagattagc atctaaaaca gcatcacatt
     3061 tgactgtaat gtcatgagct ccagttacaa tttcatcaat accaaccaat tcacactcaa
     3121 tattagcccg acgaataata tctacaattg tcagtgtttc cccctcttcg aatccgggtg
     3181 ctacaagtac tgctactttt accatatctt acctactttc atttttcttt attttatcac
     3241 ttactcacat cggataaaac attttttcat aatctggaaa aattaattta acccattgga
     3301 ggcaattatt ttcttgtacc attcaaatga tgactttttt atacggtcaa agctaccatg
     3361 acctgaatta tccgcatcta cataaatcat gccatagcgt tttgacattt cacctgtgga
     3421 agccgctacc aaatcaataa ttccccaaac taagtaacca ataatttcaa caccgtcctc
     3481 aatagcttca cttaccatct gaatatgctt acttaaataa tcaattctat aatcatcata
     3541 aatttggcct tcaactactt gatctttagc accaagacca ttttcgacaa taaacagagg
     3601 tttttgataa cgatcataaa gtgtatttaa agtgatacgt aatccaagtg gatcaatttg
     3661 ccaacccaat cactacttga aatgtaagga tttttaactg aagtcatcaa atttgatgat
     3721 gtttcatcct gtttttcatg ggagatacat ctagaggtat aataacttaa tgccacaaag
     3781 tctgctgtat tctctgataa aatttccaaa tcatcatctt ctatccttag tttcacatcc
     3841 aactctttga attttcgcct agaataggta gggtactgtc cacgacattg aatgtcaata
     3901 aagaaatagc tttctctatt tttgtctaat gccatcaaaa tatcctccgg atggcatgaa
     3961 tacggataat agtcaccagc tgccaacata catcctactc tattattcgg atttatctca
     4021 tgtgcaattt ttacagccaa gctacttgct attagttgat gatgggctga ttgataacga
     4081 atttgagcaa cattttcttc accaaataat tctaatccac cacctgagaa agagttgtgt
     4141 aagattacgt ttatttcgtt aaaagtaatc caatttcgaa ccaaatcttt ataattctca
     4201 aatagagttt tagcatactt agtataaaga gtaatcatct ctcggtttct ccacccacca
     4261 atggagtcaa ttaagtatac aggtatatca aagtggctaa tcgtaaaact agaggttcaa
     4321 tattatatga gcgacacaac tcaaaaactc tgcgataaaa atctaagcct gcctgattcg
     4381 gttcattttc gactccagtt gaaaaaattc gtgtccaaga aatgctggtt ctaaaacact
     4441 tgatacccat ctcagcaagt aattttatat cctcttcata cctgtcgtaa aattgaattc
     4501 ctattcgact tgggtagtaa gtattttgtt cgtcaaaagt ccgataatca ataaagccct
     4561 gttttacagt tcgacgtttt tcaccaagag gtactacatc cataacagat agagagcgat
     4621 tatctttaag ataagcgccc tccgcctgat ttgctgcaat agcacctccc cacaagaaat
     4681 cttttgggaa tgtcatattg tatccttttc taaaaattag gctagtgcaa attcaattga
     4741 atctgaagaa agttttggag tcacctgagc aaactcagca ccattggtca caataaatgg
     4801 aataattgta tcataaccta gttctttcaa tttttccaag tcaaattcta ctagtaattg
     4861 acctgcctct attgtatctc cttctttaat ccgaacatta aaatgctcac ctttaagatt
     4921 gacagtatcc agtccaatat gaacaagtac ttctacacca ttatcgcttc gtaatccaat
     4981 agcgtgctta gtttcgaaaa ccattgtaac cttacctgca aatggtgcaa aaacttttcc
     5041 ttcagttgga acaatggcaa atccatttcc cataactcca gttgagaaga ctgcatcgtt
     5101 aactttatta agttctacta cttcaccctt cgcaaaaggc ttcacatcta attttgtagc
     5161 tgatacaatc gtagtatcgt cagctttagg tttactacca ataccaaata ctaaagtacc
     5221 aatcattgct aatgcaatac tgatagagat gcctatgata atatggatat aattgtcggc
     5281 aatgtaggtt ggtaatgcaa gtaggccagg aagaataaca gctgtcgccc caccactcca
     5341 gaagttgata tatgcagcac caataccacc agcaatcatt gcacaaatca ttggtttttt
     5401 gtatttcaag ttgaaaccaa acattgcagg ctcagtaact ccaaataatg ctgtaacacc
     5461 cgctgaaagt gcctctgctt tttctgactt tttctttaaa aagaaaaatg tagcaagtgt
     5521 cgcaccagcc tgggccaaat tcccagtcag gttagctgga gaaatgactg agtacccata
     5581 ctccgcaatc aattgagcgt taatcggagt aattgcataa tgcattccaa agataattaa
     5641 caaaggacgg aaagtaccaa ataacaaggc accaagtaca ccatttgtag tatagaggta
     5701 gctaacaact ttagcaacac cctgaccaag atatgttccg aaaggaccaa ttacaatgag
     5761 ctcaagtgga accatgataa ataaaactat cataggcaca aataaaactt taaaagtatc
     5821 tggaataagc ttattaaccc acttataaac atatgacatt atccatacac ttaaaatgat
     5881 cgggatgatt gtagatttat agttcacaaa tagaaccggt aggcctaaaa aagatagact
     5941 attcacacct gtttcagctg cttgtagagc accattttgg atagtaggat acattagtgc
     6001 acctgctagt gctacagcta gaaactcatg tgttttgaat ttttttgcag cactaactgc
     6061 taaaaagaat gggaaaaagt agaacagtag gtctcctatc aaactaataa tttgataagt
     6121 accacttgtt ggatcaacta agttaagtgt tgttaagatt gccgctactg acttaaccat
     6181 accacagcca atcaaaactg gaataacagg accaaaacaa ccagaaattg cttccacaac
     6241 acgggcgata atatt
//
LOCUS       DASFRC010000126         6047 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.126, whole genome shotgun sequence.
ACCESSION   DASFRC010000126 DASFRC010000000
VERSION     DASFRC010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6047)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6047)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6047
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.126"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(76..2157)
                     /gene="fusA"
                     /locus_tag="U1087_001705"
     CDS             complement(76..2157)
                     /gene="fusA"
                     /locus_tag="U1087_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018374688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEM4756156.1"
                     /translation="MAREFSLEKTRNIGIMAHVDAGKTTTTERILYYTGKIHKIGETH
                     EGASQMDWMEQEQERGITITSAATTAQWNNHRVNIIDTPGHVDFTIEVQRSLRVLDGA
                     VTVLDSQSGVEPQTETVWRQATEYGVPRIVFANKMDKIGADFLYSVSTLHERLQANAH
                     PIQLPIGSEDEFRGIIDLIKMKAEIYTNDLGTDILEEDIPAEYLEQAQEYREKLVEAV
                     AETDEELMMKYLEGEEITNEELKAAIRKATINVEFFPVLCGSAFKNKGVQLMLDAVID
                     YLPSPLDIPAIKGVNPDTDAEEERHASDEEPFAALAFKIMTDPFVGRLTFFRVYSGVL
                     NSGSYVLNTSKGKRERIGRILQMHANSRQEIETVYAGDIAAAVGLKDTTTGDSLTDEK
                     AKIILESIHVPEPVIQLMVEPKSKADQDKMGIALSKLAEEDPTFRVETNVETGETVIS
                     GMGELHLDVLVDRMRREFKVEANVGAPQVSYRETFRASTQARGFFKRQSGGKGQFGDV
                     WIEFTPNEEGKGFEFENAIVGGVVPREFIPAVEKGLVESMANGVLAGYPIVDVKAKLY
                     DGSYHDVDSSETAFKVAASLALKEAAKSAQPTILEPMMLVTITAPEDNLGDVMGHVTA
                     RRGRVDGMEARGNTQIVRAYVPLAEMFGYATVLRSATQGRGTFMMVFDHYEDVPKSVQ
                     DEIIKKNGGNA"
     gene            complement(2699..3169)
                     /gene="rpsG"
                     /locus_tag="U1087_001706"
     CDS             complement(2699..3169)
                     /gene="rpsG"
                     /locus_tag="U1087_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011285383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEM4756157.1"
                     /translation="MSRKNQAPKREVLPDPLYNSKLVTRLINRVMLDGKRGTAASIVY
                     GAFDQIKEATGNDALEVFETAMENIMPVLEVRARRVGGSNYQVPVEVRPERRTTLGLR
                     WLVTIARNRGEHTMIDRLAKEIMDAANNTGAAVKKREDTHKMAEANRAFAHFRW"
     gene            complement(3186..3599)
                     /gene="rpsL"
                     /locus_tag="U1087_001707"
     CDS             complement(3186..3599)
                     /gene="rpsL"
                     /locus_tag="U1087_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001142328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEM4756158.1"
                     /translation="MPTINQLVRKPRKSKVEKPKSPALNVGYNSRKKVQTNVSSPQKR
                     GVATRVGTMTPRKPNSALRKFARVRLSNLIEVTAYIPGIGHNLQEHSVVLLRGGRVKD
                     LPGVRYHIVRGALDTAGVNDRKQGRSKYGTKRPKG"
     gene            complement(3830..5452)
                     /gene="groL"
                     /locus_tag="U1087_001708"
     CDS             complement(3830..5452)
                     /gene="groL"
                     /locus_tag="U1087_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940029.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEM4756159.1"
                     /translation="MAKEIKFAADARESMVRGVDILADTVKVTLGPKGRNVVLEKAYG
                     SPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREG
                     LKNVTAGANPIGIRRGIEAAVATAVEALKAQASPVSNKAEIAQVAAVSSRSEKVGEYI
                     SEAMERVGTDGVITIEESRGMETELDVVEGMQFDRGYLSQYMVTDNEKMVAELENPFI
                     LITDKKISHIQDILPLLESILQTNRPLLIIADDVDGEALPTLVLNKIRGTFNVVAVKA
                     PGFGDRRKAMLEDIAILTGGTVITEDLGLDLKDATIETLGQAAKVVVDKDGTTIVEGA
                     GNPEAIANRVAVIKSQIEGTTSEFDREKLQERLAKLSGGVAVIKVGAATETELKEMKL
                     RIEDALNATRAAVEEGIVAGGGTALVNVIDSVAKLELKGDDETGRNIVLRALEEPVRQ
                     IAYNAGYEGSVIIDKLKNSELGIGFNAATGEWVNMMDAGIIDPVKVTRSALQNAASVA
                     SLILTTEAVVANKPEPAAPAMPQGMDGMGMGY"
     gene            complement(5463..5744)
                     /gene="groES"
                     /locus_tag="U1087_001709"
     CDS             complement(5463..5744)
                     /gene="groES"
                     /locus_tag="U1087_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009730535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HEM4756160.1"
                     /translation="MLKPLGDRIVVKIEEKEQTVGGFVLAGASQEKTKEASVLAIGQG
                     IRTLNGDLVAPAVAVGDTVLIDAHAGLEVKDGDQTVHIIREADILAIVE"
BASE COUNT         1598 a         1383 c         1219 g         1847 t
ORIGIN      
        1 agtatcacgc tcagatgtgt gacatatccg tcgtaccaaa aaaacaccta cccgaaggta
       61 ggtgtagata gacaattatg cattgccacc gtttttctta atgatttcat cttgtacaga
      121 ttttggtaca tcttcgtagt ggtcaaatac catcatgaaa gtaccgcgac cttgtgttgc
      181 tgaacgaaga acagttgcgt aaccgaacat ttccgcaagt ggcacataag cacgaacgat
      241 ttgtgtgtta ccacgagctt ccataccatc aacgcgacca cgacgtgcag taacgtgacc
      301 cataacgtca ccaaggttat cttctggtgc agtgattgtt acaagcatca ttggctcaag
      361 gatagttggt tgagctgatt tagctgcttc tttaagggca agagatgctg ccactttgaa
      421 ggctgtttca gatgagtcga catcgtggta tgaaccatcg taaagcttag ctttaacgtc
      481 aacgattggg taaccagcaa gaacaccgtt cgccatagat tctacgagac ctttttcaac
      541 cgctgggatg aattcacgtg gaaccacacc accgacgata gcgttctcga actcgaaacc
      601 tttaccttct tcgtttggtg tgaattcgat ccaaacgtca ccgaattgac ctttaccacc
      661 agactggcgt ttgaagaaac cacgagcttg tgtagaagca cggaatgttt cacggtatga
      721 tacttgagga gcacctacgt ttgcttcaac cttgaattca cgacgcatac ggtcaacaag
      781 gacatccaag tgcaactcac ccataccaga gataactgtt tcaccagttt caacgtttgt
      841 ttcaacgcgg aatgttggat cttcttcagc caatttagaa agggcaatac ccatcttgtc
      901 ttggtcagct ttagacttag gctcaaccat caattggata actggttctg gaacgtggat
      961 tgactcaagg atgatttttg ctttttcatc tgtcaatgag tcaccagttg tagtatcttt
     1021 caaaccaacc gcagcggcga tgtcacctgc ataaacagtt tcaatttctt gacggctgtt
     1081 tgcgtgcatt tgaaggatac gtccgatacg ctcacgttta cctttagaag tgttcaatac
     1141 gtatgagccg ctgttaagga cacctgagta gacacggaag aatgtcaaac gacctacgaa
     1201 tgggtcagtc atgatcttga aggcaagagc tgcaaatggc tcctcatctg atgcatgacg
     1261 ctcttcttca gcatctgtat ctgggttaac acctttaata gcagggatgt caagtgggct
     1321 tggaaggtag tcgataactg catcaagcat caactgaaca cctttgtttt tgaaggctga
     1381 accacacaat actgggaaga attcaacatt gatagttgct ttacggatag cggctttcaa
     1441 ttcttcgttt gtgatttctt caccttcaag gtatttcatc atcaattctt catcagtttc
     1501 agcaactgct tcaaccaatt tttcacggta ttcttgagct tgctcaaggt attcagctgg
     1561 aatatcttct tcaagaatat ctgtaccaag gtcgttagta tagatttcag ctttcatctt
     1621 gattaagtcg atgataccac ggaactcgtc ttcagaaccg attggcaatt gaattgggtg
     1681 tgcatttgct tgaagacgct catgaagtgt gcttactgag taaaggaagt cagcaccgat
     1741 tttatccatc ttgttagcaa atacgatacg tggaacaccg tattcagttg cttgacgcca
     1801 tactgtttca gtttgtggct caacacctga ttgtgagtca agaacggtta ccgcaccatc
     1861 aagaacgcga agtgaacgtt gtacttcgat tgtgaagtcc acgtgtcctg gtgtgtcgat
     1921 gatgtttaca cggtggttgt tccattgagc tgttgtcgca gcagatgtga tagtgatacc
     1981 acgctcttgc tcttgctcca tccagtccat ttgtgatgca ccttcgtgag tttcaccgat
     2041 tttgtggatt ttaccagtgt agtaaagaat acgctcagtt gtcgttgttt tacccgcgtc
     2101 aacgtgcgcc atgataccga tattacgagt tttttctaat gaaaattcgc gtgccatgag
     2161 gtttgttctc ctataatttt agttttatac tttattatac catattttaa gaaaagcgag
     2221 tgggcaagtc ccacccgctt gatttcttac taatggtgtg aagtggatga ggtcatcctc
     2281 aatccggttt gtgatggttg aacgataagt ttctaccata atctcaattg atttatgtag
     2341 aactgactta acgtcctcac atcctaattg aactcgagct acaactcact gacaaaaaga
     2401 gacgcagttg ttttggcttt agccaattac aaatggggct acctttaggt gagaacctca
     2461 ttgattgcac agcaatctgc ttcgcttccc tattttgtct aggagttgct tgacgccctc
     2521 gtatcttaat cttagttgag ttcggactaa aaattctgga aaaaagagac gcaattgttt
     2581 tggctttagc caattacaag tgtggctacc tttaggtgta aatcttcctt ggaccttgag
     2641 gtccatcgtc tgatttccta tttttccttg aattttctta acgtcctcac atcctatctt
     2701 accagcggaa gtgtgcgaat gcgcggtttg cttctgccat tttgtgagta tcttcacgtt
     2761 tcttaacagc tgcaccagtg ttgtttgctg catccatgat ttctttcgca aggcgatcga
     2821 tcatagtgtg ctcaccacgg ttacgagcga ttgttaccaa ccaacgaaga ccaagtgttg
     2881 tacgacgctc tggacgaact tcaactggga cttggtagtt agaaccaccg acacgacgtg
     2941 cacgtacttc aagtacaggc atgatgtttt ccattgctgt ttcaaatact tcaagtgcat
     3001 cgttaccagt tgcttctttg atttgatcaa aggcaccgta aacgattgat gcagcagtac
     3061 cacgtttacc gtccaacata acacggttga tcaaacgagt taccaatttt gagttataca
     3121 atggatctgg caatacttcg cgcttaggcg cttgattttt acgactcatt tatatttccc
     3181 ctttcttagc cttttggacg tttagtaccg tatttagaac ggccttgctt acgatcgtta
     3241 acacctgcag tatcaagtgc accacgaacg atatggtaac gtacccctgg aaggtctttt
     3301 acacgtccac cacgaagaag aacaacgctg tgctcttgca agttgtgacc gatacctggg
     3361 atgtaagcag taacctcgat aaggttgctc aaacgtacac gagcgaattt acgaagggct
     3421 gagttaggtt ttctaggtgt cattgttccg acacgagttg caacaccgcg tttttgtggt
     3481 gatgaaacgt tagtttgaac ttttttacgg ctgttgtaac caacgttcaa agctggtgat
     3541 ttaggttttt ctactttaga cttacgtggt ttacgtacca actggttaat tgtaggcatc
     3601 tacattctcc tgtatatatt ttttattttt ggtgataggg cattggtgac aacccctatc
     3661 tgtgtgtact tttgcaacat ttgtcagcac gtccctgtac actcttgaga gaccaaaagt
     3721 aaaaagtacc gtctaatata gtaccacatc ccaagaccat tgtcaaatag atatatttga
     3781 aatttttaag aaaaaacaca gccaagtagc tgtgtcattt tgctatttct tagtagccca
     3841 tacccattcc gtccatacct tgtggcatag ctggagcagc tggttctggt ttattggcaa
     3901 caactgcttc cgttgtcaat atcaagctgg ctacggaagc tgcattttga agagcagaac
     3961 gagtcacctt aacagggtca ataatacctg catccatcat attcacccat tcacctgtcg
     4021 cagcattaaa gccaatccca agttccgaat tcttcaattt atcaatgata actgaacctt
     4081 cataacctgc gttataggca atctgacgaa ctggttcttc caaggcacga aggacaatat
     4141 tgcgtcctgt ttcatcgtcg cctttcaact ccaatttcgc tacgctatcg ataacattta
     4201 caagggctgt accaccaccg gcaacgattc cttcttcaac tgcggcacgt gttgcgttga
     4261 gggcatcttc gatacggagt ttcatttctt tcaactcagt ctcagtagcg gcaccgactt
     4321 tgataacagc aacaccgcca gacaattttg ccaaacgctc ttgcaatttt tcacggtcaa
     4381 attctgaagt tgttccctca atttgtgact tgataacagc cacacggttg gcaatggctt
     4441 caggattgcc agcaccttca acaatagttg taccatcctt gtcgaccaca accttggcag
     4501 cttgaccaag ggtttcaatg gtcgcatctt tcaagtccaa accaaggtct tctgtaatga
     4561 ctgtaccacc tgtcaagata gcaatgtctt ccaacatagc tttacgacgg tcaccaaagc
     4621 ctggagcttt gactgcaaca acgttgaatg taccacgaat cttgttgaga acaagggtag
     4681 gaagagcttc gccatccaca tcgtcagcaa taatcaaaag cggacggttg gtctgaagaa
     4741 tgctttccaa gagtggcaaa atgtcttgga tatgagaaat tttcttatcg gtaatcaaga
     4801 tgaatggatt ttcaagttca gctaccatct tttcattatc tgttaccatg tattgtgaca
     4861 gataaccacg gtcaaattgc ataccttcaa ccacatccaa ctcagtttcc ataccgcgag
     4921 attcttcaat agtgataaca ccgtctgttc ccacgcgctc catagcctca gaaatgtact
     4981 caccaacttt ttcagagcgc gaagacacag ctgcgacttg agcaatttca gctttattgg
     5041 atacaggact tgcttgtgct ttcaaggctt caaccgccgt cgcaaccgcg gcttcaatac
     5101 cacgacggat accgattggg ttggcacctg cagtcacgtt tttcaagcct tcgcgaacaa
     5161 tcgcttgtgt caaaacagta gcagttgttg taccgtcacc agctatgtca ttggtttttg
     5221 aagccacttc ggataccaac ttagcaccca tattttcaaa atggtcttcc aactcgattt
     5281 ctttagcaat ggttacacca tcattagtaa taagtggtga gccataagcc ttttccaaga
     5341 caacattgcg accttttgga cccaaggtta ctttgacagt atccgccaaa atatcgacac
     5401 cacggaccat gctttcacgt gcatctgctg caaatttaat ttcttttgcc attttcctac
     5461 ctctattcta caattgccaa aatgtctgct tcacggatga tgtgaacggt ttggtctccg
     5521 tctttaactt ccaatcctgc gtgagcatca atcaaaacag tatctccaac tgccaccgct
     5581 ggggcaacca agtcaccatt caaggtacga atcccttgtc caatcgctag gacacttgct
     5641 tcttttgtct tttcttgact tgcacctgct aggacaaagc caccaactgt ttgttctttt
     5701 tcttcaattt ttacgacgat acgatcgccc aatggtttca acattgtatt acctcctggt
     5761 ctttttagca ctctttgtat gcgagtacta attcacattt cctattgtat cacttggtca
     5821 aaaatagtca agaaaattct tttttaattt acctaaaatc cgtcgcagga ctgaggaaac
     5881 acaacctgtt aattatagcg aaactatgtt atactatttt taaaaagttt gggagtattc
     5941 atgaaatttt ttagagattt aaaaatagat taccttgaaa gccgattttc agcctacgaa
     6001 agttttgcag aatggttttt aaaacgtaaa ttaggctttt gggggag
//
LOCUS       DASFRC010000127         5964 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.127, whole genome shotgun sequence.
ACCESSION   DASFRC010000127 DASFRC010000000
VERSION     DASFRC010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5964)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5964)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5964
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.127"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(23..1690)
                     /gene="dnaX"
                     /locus_tag="U1087_001710"
     CDS             complement(23..1690)
                     /gene="dnaX"
                     /locus_tag="U1087_001710"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HEM4756161.1"
                     /translation="MYQALYRKYRSQTFGEMVGQEVVATTLKQAIEQGKISHAYLFSG
                     PRGTGKTSAAKIFAKAMNCPNQVGGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDE
                     IRDIRDKSTYAPSLATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHK
                     IPATILSRVQRFEFKSIKVTDIQEHLAAILTKEGLIFDEQALTIIARRAEGGMRDALS
                     ILDQALSLSQDQQVTLEIAEEITGSISLRALDDYVASLCQGDSVTALQHLQTLFDQGK
                     SMSRFATDLLYYLRDVLIVQTGGEDTHLTTGFSENLALEQARIFTMIEMVTRGLADIK
                     SSPQPKIYAEMMTIRLAEDSSPSGAMAELPADLLGQLASLQQQVADLQKQLGQLSSQP
                     STVKPVSRKPQAPKKYRLDTSKVHAILQEAMENPTLARENLTRLQNAWSEIIESLSGA
                     DRALLVGSQPVAANENHAILAFDSPLNAEQTMKRDNLNTMFGNILSKAAGFSPQILAI
                     AQEDWVSIRAEFSAKAKGQKTQEIEKEASPVPEEFGFLADTVEIRND"
     gene            complement(1690..2187)
                     /locus_tag="U1087_001711"
     CDS             complement(1690..2187)
                     /locus_tag="U1087_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEM4756162.1"
                     /translation="MTKQEKISNYQLLLAQLEALLDGETNALANLSNASALLNQALPN
                     SVFTGFYLYDGSELILGPFQGGVSCVHIALGKGVCGEAAAKRQTILVDDVRLHDNYIS
                     CDATALSEIVVPMVKNDQLLGVLDLDSRLVADYDTIDQDYLEKFVALLVEKTDWNFAM
                     FGEKR"
     gene            complement(2252..2521)
                     /locus_tag="U1087_001712"
     CDS             complement(2252..2521)
                     /locus_tag="U1087_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1294 domain-containing protein"
                     /protein_id="HEM4756163.1"
                     /translation="MSIKQMVSMALVVWNLVVFITYGMDKGKARKNAYRISEKTLLLM
                     SYFGGGLGAWAGGTHFRHKTQKKYFQLAWAIGVLIDAVIMYWMWK"
     gene            complement(2609..3148)
                     /locus_tag="U1087_001713"
     CDS             complement(2609..3148)
                     /locus_tag="U1087_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEM4756164.1"
                     /translation="MPKQRILPHIILGIMGASGQMVTGKQITDYVQRDLGEFWQVAHS
                     QVYPELKRMTKEELITCHAVPGNEKEKQYAMTATGRQILDEWLSIPNEETPQQRDLFS
                     IKMFFIREKDDPRIPGLLQSQIELVTKHLKHLESRKVELFSTKESIQDNYGHYLILTR
                     AIERNRAQLKWLEDTLAEM"
     gene            complement(3150..3779)
                     /gene="udk"
                     /locus_tag="U1087_001714"
     CDS             complement(3150..3779)
                     /gene="udk"
                     /locus_tag="U1087_001714"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HEM4756165.1"
                     /translation="MTQKPIIIGVTGGSGGGKTSVSRAILDNFPNARISMIEHDSYYK
                     NQSHLTFEERILTNYDHPLAFDTDLMIYHISELLAGRSVDIPIYDYTQHTRSEKTYRQ
                     EPQDVFIVEGILVLEDKRLRDLMDIKIFVDTDDDIRIIRRIKRDMEERGRSLDSIIEQ
                     YTSVVKPMYHQFIEPTKRYADIVIPEGVSNVVAIDLINTKVESILRERG"
     gene            3862..4848
                     /locus_tag="U1087_001715"
     CDS             3862..4848
                     /locus_tag="U1087_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEM4756166.1"
                     /translation="MLNFGIVGTSDISHRFIEAVHLSGYYQLQAVFSRKLETAAAFSE
                     QYEGVDLYTEWVKFLSAPIDVVYIASPNALHFEQAKAVLVAGKHAIVEKPMVSTPQEL
                     EQLRRVAQENNVFLFEAARNYHEQAQAIIREFLTDKTILGGSFGYAKYSSKMPELLAG
                     QMPNIFSTDFSGGALMDLGVYTLYAAIGILGTPRTARYVAQQLPSSIDLNGSGQLIYD
                     NYIVHIQAGKNITSNLASEIYTNDGTLTLNACQYISSAIFTKHDGEQIVLPIQAAQHP
                     MLEEALEIAQAIKQQNRKLVDQWLTVAESVHQTLYTMRQDAGIIFKADNNEI"
     gene            4838..5920
                     /locus_tag="U1087_001716"
     CDS             4838..5920
                     /locus_tag="U1087_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM4756167.1"
                     /translation="MKSKFPSSWTDQLTLLGFDDFTPIQVQAFEPIANGKSLLAISPT
                     GTGKTLAYLWPSLLALTPKKAQQLLILAPNTELAGQIFDVCKAWSETIGLTAQLFLSG
                     SSQKRQIERLKKGPEILIGTPGRIFELIKLKKIKMMNINTIVLDEFDQLFSDSQYQFV
                     EKIINYVPRDHQLIYMSATAKFDRQKIAEDIESIDLSEQKLDNIQHCYMMVDKRERLE
                     TLRKFANIPDFRALAFFNSLSDLGASEDKLLYNGVNAVSLASDVNVKFRKVIIERFKN
                     HELNLLLATDMVARGIDIDNLECVLNFEVPFDQEAYTHRSGRTGRMGKEGLVITLVSS
                     PSELKQLKKYASVQEVILKSQELYKI"
BASE COUNT         1712 a         1404 c         1147 g         1701 t
ORIGIN      
        1 gctttttgct cagcctcatt ttctaatcat ttctaatctc aactgtatct gcgagaaagc
       61 caaattcttc tgggactgga ctggcttctt tttcgatttc ctgtgtcttt tgcccttttg
      121 ctttcgctga aaattcagca cgaatactta cccaatcttc ctgagcaata gctaaaatct
      181 gtggagaaaa acctgcggcc ttgctgagaa tatttccaaa catggtattg agattgtcac
      241 gcttcatcgt ctgttcagca ttaagcggag aatcaaaggc tagaatcgca tgattttcat
      301 tggcagcaac tggttgagaa ccaaccaaca aggcacgatc agccccagat aagctctcga
      361 taatttcact ccaagcattt tgcaagcggg tcaaattttc acgcgccaag gttggatttt
      421 ccatagcttc ctgcaaaatt gcatgaacct tgctggtatc caatcggtac ttcttcggag
      481 cctgtggctt gcgtgaaact ggcttaacag tacttggttg actagataat tgacctagtt
      541 gtttctgtaa atccgcaact tgttgttgca gactggctag ttgacccagt aaatcagctg
      601 gcagctctgc cattgccccc gaaggagaac tatcttcagc caaacgaatg gtcatcattt
      661 cagcgtaaat cttgggttga ggactggact tgatgtccgc caagcccctg gtcaccatct
      721 ctatcatggt aaaaatccgt gcctgctcaa gagctagatt ttctgaaaaa cctgttgtta
      781 aatgcgtatc ctcaccaccc gtctgcacga taaggacatc tctcaaatag tacaaaagat
      841 ctgtcgcaaa acggctcata ctctttcctt ggtcaaacaa ggtttgtaga tgctggagag
      901 ctgtgacact atccccttga cacagacttg ccacatagtc atccaaggca cgcaagctga
      961 tagaacccgt aatttcctca gcaatttcca aggtcacttg ctggtcctga ctaaggctga
     1021 gagcctgatc caaaatggat agggcatccc gcatcccccc ttctgcccga cgcgcaatga
     1081 tcgtcagagc ctgctcgtca aagattagcc cttccttggt caaaattgca gccaagtgct
     1141 cctgaatgtc cgtcaccttg atggacttaa attcaaatcg ttgcaccctt gacagaatgg
     1201 tagcaggaat cttgtgcaat tccgtcgttg ctagaataaa gaccacattt tcagtcggtt
     1261 cttccaaggt cttcaagagg gcattgaagg ctccagtaga cagcatgtgg acctcgtcga
     1321 tgatatagac cttataggtc gcaagactag gtgcgtaggt cgatttgtcc cgaatatcac
     1381 ggatttcatc cacaccattg ttggaagcag catcaatctc aatcacatct tccaggctac
     1441 cttccgtaat agcctgacag atataacaat cgttacaagg ctcgcctcca acctgattag
     1501 gacagttcat ggccttggca aaaatcttag ctgccgatgt cttacccgta ccacgaggac
     1561 ctgaaaagag ataggcatga ctgattttcc cctgttcaat ggcctgtttg agcgtggtcg
     1621 caaccacctc ctgccccacc atctccccaa aggtctggct tcggtacttc ctatataaag
     1681 cttggtacat tagcgttttt ctccaaacat agcaaaattc cagtccgtct tctcaaccaa
     1741 gagagcaacg aacttttcta gatagtcttg gtcaatcgta tcataatcag ctaccaatct
     1801 cgaatccaag tccaaaaccc ccagcaactg gtcgtttttc accattggca caacgatttc
     1861 tgatagggct gtcgcatcgc aggaaatata gttgtcatgt agacgaacat cgtctacgag
     1921 aatagtctgg cgcttagctg cagcctcacc gcagacaccc tttccaagtg caatatgaac
     1981 acaggaaacg ccaccctgaa aaggccccaa aatcaattca ctaccatcat acaagtaaaa
     2041 tcctgtaaag acagagtttg gtagagcttg attgagcaaa gcagaagcat ttgatagatt
     2101 ggctaaagca ttggtttcac catcaagaag agcttccaat tgagccaata atagttgata
     2161 gtttgaaatt ttttcttgtt ttgtcatagg aacattatag catagttaag ccgactttta
     2221 tagtccgagc gataaagaaa aaggcttgcg cctatttcca catccaatac ataatcactg
     2281 catcaatcaa tacccctata gcccaggcta gttgaaaata ctttttctgt gtcttatgcc
     2341 gaaaatgggt tccacctgcc caggcaccca gcccgccacc aaaataggac atgagtaata
     2401 aggtcttttc tgaaatccga taggcgttct ttcttgcctt ccctttatcc ataccatagg
     2461 taatgaagac aactaaattc caaactacta gcgccatact aaccatctgt ttgattgaca
     2521 tacattcctc caattaagtc acatttcttc ttactctaac ataatccaaa acaggacaca
     2581 aggaaaaacg attcggaaat ccgaatcgtt acatttccgc cagtgtatcc tctaaccatt
     2641 tgagctgggc acggttgcgt tcaatagccc gtgtcaaaat caaatagtgt ccataattgt
     2701 cttggatact ttccttggtt gagaacagct caactttacg actttctagg tgttttaagt
     2761 gcttggtgac tagttcaatt tgactctgca acaaaccagg aatccgtggg tcatcctttt
     2821 cacggataaa aaacatcttg attgaaaaca agtctctttg ctgaggcgtt tcttcatttg
     2881 gaatggatag ccattcgtct aaaatctgac gaccagtagc cgtcatcgca tactgctttt
     2941 ccttttcatt tccaggtact gcatgacaag taatcaattc ttccttggtc atacgtttta
     3001 attctggata gacttggcta tgggcaacct gccaaaattc gcctaaatca cgttgaacat
     3061 agtcggtaat ctgcttgcca gttaccattt gaccgctagc acccataatc cctaatatga
     3121 tatgaggtaa tattctttgc ttcggcatct taaccacgct ctcttaatat actctccacc
     3181 ttggtgttaa tcaagtcaat agctacaacg ttgctgacgc cttcaggaat gacgatatct
     3241 gcatagcgct tggttggctc gataaactgg tgatacattg gtttcaccac cgaggtgtac
     3301 tgctcaatga tactatctaa gctacggcca cgctcttcca tgtctctctt aatgcggcga
     3361 atgatacgaa tatcgtcatc agtatcgacg aatatcttaa tatccattaa atcccgcaac
     3421 cgtttgtctt ccaatactaa aataccttcc acaataaata catcttgtgg ttcctgacga
     3481 taggtcttct ctgaacgtgt gtgctgagtg taatcataaa tcggaatatc cactgaacgt
     3541 cctgctaata gctcactgat atgataaatc atcaaatccg tatcaaaagc cagtggatgg
     3601 tcataattgg ttagtatccg ttcttcaaag gtcaggtggg actgattctt ataataagaa
     3661 tcgtgttcaa tcatagatat acgagcattt gggaaattat ccagaatggc acgcgacaca
     3721 cttgtcttgc cacccccaga tccgccggtt acgccaataa taatgggttt ctgagtcatc
     3781 atcatctcct tctattttca atactatttt accatgaaac atggtataat gaaaaggata
     3841 acacaaaaga aatgagaatt tatgcttaat tttggtattg ttggcacctc agacatctct
     3901 catcgtttta tagaggcggt ccatttaagt ggatattatc agctacaggc tgttttctcc
     3961 cgtaaactag aaactgctgc tgccttttca gagcagtatg aaggagtcga tttatacaca
     4021 gaatgggtaa aatttctttc tgctcccatt gatgttgtct atattgccag tccaaatgcc
     4081 ctgcactttg aacaggcaaa agctgttcta gttgctggta aacatgctat tgttgagaag
     4141 cccatggttt ctacacctca ggaattagaa caattgcgtc gcgttgccca agaaaataat
     4201 gttttcctct ttgaggctgc tcgaaactat cacgaacaag ctcaagccat tatccgtgaa
     4261 tttttgacgg ataaaacgat tttaggtggt tcatttgggt atgccaaata ttcttctaag
     4321 atgcctgaat tgttagccgg gcaaatgcca aatatctttt caactgattt ttccggtggt
     4381 gctctcatgg atttaggtgt ctatacgctc tacgccgcta tcggcatttt gggaactccc
     4441 agaacggccc gctatgtagc acaacagcta ccttctagta ttgacttaaa tggttcggga
     4501 caactcattt atgacaacta tatcgtccac attcaagcag gaaaaaatat tacgagcaat
     4561 ctagcgagcg aaatctatac aaatgatgga acactaacac tcaacgcatg ccagtatatc
     4621 agctctgcta ttttcacaaa acatgacgga gagcaaattg ttttaccaat ccaagcggcc
     4681 cagcatccta tgctcgaaga agcgctagaa attgcacagg caatcaagca acaaaaccgc
     4741 aagcttgtgg accagtggtt gactgtggca gaaagcgtcc atcaaacact ttacaccatg
     4801 cgtcaagacg caggaataat ctttaaggcg gataacaatg aaatctaaat ttccctccag
     4861 ctggacggac cagcttaccc tacttggctt tgatgacttt actcctatcc aagtccaggc
     4921 ctttgagcct attgcaaacg gcaagtccct tctagctatc agcccaacag gcacaggaaa
     4981 aacccttgcc tacctctggc ctagcttatt agcactaact cctaaaaaag cccaacaatt
     5041 gctcatcctc gcaccaaata cagagctggc tggtcaaata tttgatgttt gtaaggcttg
     5101 gtcggagaca attgggttga ctgctcaact attcttgtct ggttccagtc aaaaacgcca
     5161 gattgagcga ctaaaaaaag gaccagaaat cctgattgga acacctggtc gtattttcga
     5221 gttgattaaa ttgaaaaaaa tcaagatgat gaatatcaac accatcgtcc tagatgagtt
     5281 tgatcagcta ttctccgatt ctcaatatca gtttgttgaa aagattatca actatgtacc
     5341 tcgtgaccac cagttaatct acatgagtgc aacagctaaa tttgaccgtc aaaaaattgc
     5401 tgaggacatt gaaagcattg atttatctga gcagaaattg gataatatcc agcattgcta
     5461 tatgatggta gataagcgtg aacgtttgga aactctacgt aagtttgcca atatccctga
     5521 ttttcgtgct cttgcatttt ttaacagcct atcagacctt ggtgcaagcg aagataaact
     5581 actctataat ggtgtgaatg cagtttcatt ggcttctgat gtcaacgtaa aattccgtaa
     5641 ggtcatcatc gaacgtttca agaatcacga actcaatctt ctacttgcta cagatatggt
     5701 cgcacgcggt attgatattg ataacttaga atgtgtcctc aactttgaag ttccttttga
     5761 ccaagaagcc tacactcatc gttctggacg tactggacgc atgggcaagg aaggtcttgt
     5821 catcactcta gtatctagtc ctagcgaact aaaacaattg aaaaagtatg cctccgtcca
     5881 agaagtcatt ctcaagagtc aagagctcta caaaatataa taaacaatat acaaaaggct
     5941 tagaaccagt gtttctacta acat
//
LOCUS       DASFRC010000128         5958 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.128, whole genome shotgun sequence.
ACCESSION   DASFRC010000128 DASFRC010000000
VERSION     DASFRC010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5958)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5958)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5958
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.128"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            86..955
                     /gene="rfbA"
                     /locus_tag="U1087_001717"
     CDS             86..955
                     /gene="rfbA"
                     /locus_tag="U1087_001717"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002276675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HEM4756168.1"
                     /translation="MKGIILAGGSGTRLYPLTRAASKQLMPIYDKPMIYYPLSTLMLA
                     GIKDILIISTPQDLPRFKDMLGDGSELGISLLYAEQPSPDGLAQAFIIGEEFIGDDNV
                     ALILGDNIYHGNGLTKMLQRAASKEKGATVFGYQVKDPERFGVVEFDADMNAISIEEK
                     PEEPKSNFAVTGLYFYDNDVVEIAKNIKPSPRGELEITDVNKAYLDRGDLSVELMGRG
                     FAWLDTGTHESLLEAAQYIETVQRLQNVQVANLEEIAYRMGYITKEQVYELAQPLKKN
                     EYGQYLLRLIGEA"
     gene            955..1548
                     /locus_tag="U1087_001718"
     CDS             955..1548
                     /locus_tag="U1087_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018029578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HEM4756169.1"
                     /translation="MTENFFGKTLAARPVEAIPGMLEFDIPVHGDNRGWFKENFQKEK
                     MLPLGFPESFFAEGKLQNNVSFSRKNVLRGLHAEPWDKYISVADGGKVLGTWVDLREG
                     ETFGNTYQTVIDASKGIFVPRGAANGFQVLSDFVAYSYLVNDYWALELKPKYAFVNYA
                     DPSLDIKWENLEEAEVSEADENHPFLKDVKPLRKEDL"
     gene            1548..2033
                     /locus_tag="U1087_001719"
     CDS             1548..2033
                     /locus_tag="U1087_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HEM4756170.1"
                     /translation="MFQAFLEIAEQLNKLGITPLLMGSVGLERRTGRDWQARDLDIHV
                     PSDPRGWEAPDEERIYRADELIVLMNQLGYVLVDRHEHEFHKDGLSVEFGGLHSLPEF
                     AGVELEDLEELETVGVRYYLPTLEQYLKIYQASSKDSYRAENNNQKDFAKIAYLKEIL
                     R"
     gene            2222..3268
                     /gene="rfbB"
                     /locus_tag="U1087_001720"
     CDS             2222..3268
                     /gene="rfbB"
                     /locus_tag="U1087_001720"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002884100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HEM4756171.1"
                     /translation="MSQFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGN
                     KANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTN
                     FIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSP
                     YSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLY
                     GEGKNVRDWIHTNDHSTGVWAILTKGHMGETYLIGADGEKNNKEVLELILEKMGQPKD
                     AYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDFSQGLEETIQWYTDNQDWWKAEKE
                     AVEANYAKTQEVIK"
     gene            3323..4174
                     /gene="rfbD"
                     /locus_tag="U1087_001721"
     CDS             3323..4174
                     /gene="rfbD"
                     /locus_tag="U1087_001721"
                     /EC_number="1.1.1.133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019780653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose reductase"
                     /protein_id="HEM4756172.1"
                     /translation="MILITGANGQLGTELRYLLDERGVEYVAADVAEMDITDADKVDA
                     FFAEVKPSVVYHCAAYTAVDMAEDEGKELNYKINVTGSENVAKAAAKYGATLVYISTD
                     YVFNGDLPVGKEWQVDDQPDPQSEYGRTKRKGEEAVEKFADKFYTVRTAWVFGNYGKN
                     FVFTMQNLAENRDTLTVVNDQHGRPTWTRTLAEFMVHLVDTKQAFGYYHLSNDAAEDT
                     TWFDFATEILKDTNTKVLPVDSSQFPAKAKRPFNSTMSLDKAKATGFVIPTWQEALEA
                     FYKQEKK"
     gene            4191..5234
                     /locus_tag="U1087_001722"
     CDS             4191..5234
                     /locus_tag="U1087_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM4756173.1"
                     /translation="MKKKAIVKSLLMSGIFLALLGGATLLSGAVPVVAAETSQSTTYH
                     LTDDEKVAVREYIQAKMTIDMQEYRLAFLEGMMEEMASGSAEAAWDEEIADLKANLTA
                     EQVVVLDELEANLIGSIAQHYHYLFETLTVAGKSGREEAAAIVSKYESEDDASTPEAE
                     LAALKYAREVIVELLNKESAAIDNYIAYAEATGQELAGLLESGNSNLESITSATIGYG
                     QALATASQPKFPYDFSEMDRQIAELTASLQSKVEDKSTANIENTGAQTSQSVTNDSND
                     LQDVPGQGGGQISDVATGKGNISEAGQKKVIPNDNAKVLPKTSGKSSLPLTVLGLITI
                     FAGWLLTKKQEEK"
     gene            5272..>5958
                     /locus_tag="U1087_001723"
     CDS             5272..>5958
                     /locus_tag="U1087_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEM4756174.1"
                     /translation="MFLHVKYIKEMFVKKRTLLFLSLCASALNAQLVQADMVNAPSSQ
                     VSSSQVAETGGQLSVVDEAGQIKAILSNIQGEIIGVTAQFSSETNSGITVTFSMDEQG
                     RYVAVLDRSAFAEEDQVFSLKLTAQLTDGSFQTLSDYSFEWKKDVVSAAEKPTALDNS
                     DATPSKIEEEATSTTTSSTVNSSLTAGATSSTSNSLTRSSSNTIAGSSNGSTSVPSAR
                     VSTASSSVNVT"
BASE COUNT         1831 a         1142 c         1375 g         1610 t
ORIGIN      
        1 ttgtgtcaca ggcttttttc ttatgacaat atctttaaaa atatggtata atgaactgat
       61 attaatttag ggaaggtact cttatatgaa aggtattatt ctagctggtg ggtcaggtac
      121 acgcttgtat cctttgacgc gcgcagcttc aaaacagttg atgccaattt acgataaacc
      181 aatgatctat tatccattgt caacattgat gttggctgga atcaaagata ttttgattat
      241 ttcaactccg caagatcttc cacgttttaa ggatatgtta ggagatggtt ctgaacttgg
      301 aatttcactt ttatatgcag aacaaccaag tccagatggt ttggcgcaag cctttattat
      361 cggtgaagaa tttatcggtg atgacaatgt agccttgatt cttggtgata acatctacca
      421 cggaaatggt ttgaccaaga tgttgcaacg tgctgctagc aaagaaaagg gagcgactgt
      481 ctttggttat caagtaaaag atccagaacg gtttggtgtt gttgagtttg acgctgatat
      541 gaatgccatc tctatcgaag aaaaacctga agagccaaaa tcgaattttg ctgttactgg
      601 tctttatttc tatgacaatg atgttgtgga gattgcgaaa aatatcaagc cttcacctcg
      661 tggcgagttg gaaatcacag atgtcaacaa ggcttactta gatcgaggtg atttatcagt
      721 tgaattgatg ggccgtggat ttgcttggtt ggatacaggt acgcatgaaa gcctcttgga
      781 agctgcacag tacatcgaaa cggttcaacg tttgcaaaac gttcaagtgg ctaacttgga
      841 agaaattgct taccgcatgg gctacattac aaaagaacaa gtgtatgaat tggcacaacc
      901 gcttaagaaa aatgaatacg gacaatactt gctccgtttg attggagaag cttaatgaca
      961 gaaaactttt tcggtaaaac actagcagct cgcccagttg aagctattcc aggaatgtta
     1021 gaattcgaca ttcctgttca tggcgacaac cgtggctggt tcaaggagaa cttccaaaag
     1081 gaaaaaatgt tgcctctcgg ctttcctgaa agcttctttg cagaaggaaa attgcaaaat
     1141 aatgtttctt tctcccgcaa aaacgttctt cgtggtcttc acgcagagcc ttgggataaa
     1201 tacatttcag tagcagacgg cggtaaggtc ttgggaactt gggttgatct acgtgaaggc
     1261 gaaaccttcg gtaataccta ccaaaccgtt atcgatgctt caaaaggtat cttcgttccg
     1321 cgcggagcag ccaatggttt ccaagttttg tcagatttcg tggcttacag ctacttggtt
     1381 aatgactact gggctttgga actcaaacct aagtatgcct tcgtcaacta cgctgaccct
     1441 agcctcgaca tcaagtggga aaacctagaa gaagcggaag tttcagaagc agatgaaaac
     1501 cacccattcc tcaaggacgt caagcctttg agaaaagagg acctctaatg tttcaagcct
     1561 ttttggaaat agcagagcag ttaaacaagt taggaatcac tcccttgtta atgggttctg
     1621 tcggtctgga aaggcggaca ggacgagatt ggcaggcaag ggatcttgat attcatgtgc
     1681 ccagtgaccc acggggatgg gaagcgccag atgaggagcg gatttaccgt gcagatgagc
     1741 tgattgttct gatgaatcaa cttggctatg tcctggttga tcgtcatgaa catgaatttc
     1801 ataaagacgg cttatctgtt gaattcggag gcctacattc actgcctgaa tttgctggtg
     1861 tagagctaga agatttggaa gaactagaaa cagtaggtgt tcgctattac ctaccgacac
     1921 ttgaacaata cctgaaaatc taccaagctt cttcaaaaga ttcctaccgt gcagaaaata
     1981 acaatcaaaa agactttgct aagattgctt acttgaagga aatcttgagg taaaaaagcg
     2041 agcgaagcga gcagttctgt gtgtcatcgc cgtagtgaga agctcctttg ctttgctaag
     2101 gagcggggga aaccatgaga ccttaggctc atggtttagt aatgaaacac cttggtggtt
     2161 gcttacgacc ccactaccta agatgacaca caaaaaagaa aaaaactttt cggagaaaaa
     2221 aatgtctcaa tttaaaaata ttatcgtgac tggtggagct ggtttcatcg gttcaaactt
     2281 tgtacactat gtatataaca atcatccaga cgttcacgta actgttttgg ataaacttac
     2341 ttatgcagga aacaaggcta acttggaagc tattcttggt gaccgtgttg agctggttgt
     2401 tggcgacatt gcagatgctg agttggttga caaattggct gctaaggcag atgccatcgt
     2461 tcactatgcg gcagaaagcc acaacgacaa ctctctcaac gatccaagcc catttatcca
     2521 taccaacttt atcggtactt acactttgct tgaagcggct cgtaaatacg acatccgttt
     2581 ccaccatgta tcgaccgacg aagtatacgg tgaccttcct ttgcgtgaag atttgccagg
     2641 tcatggcgaa ggtccaggcg agaaatttac tgcggaaacc aactacaacc catcatcacc
     2701 ttactcatca accaaagctg cttcagactt gattgtcaaa gcatgggtgc gttcatttgg
     2761 tgtcaaagca actatctcaa actgttcaaa caactatggt ccttaccaac acatcgagaa
     2821 atttatccca cgccaaatca ccaatatctt ggcaggtatt aagccaaaac tttacggtga
     2881 aggtaaaaac gtccgtgact ggattcatac caacgaccac tcgactggtg tttgggcaat
     2941 cttgacaaaa ggccatatgg gtgaaactta cctaatcggt gctgacggtg agaagaacaa
     3001 caaagaagtg cttgaattga ttcttgaaaa aatgggtcaa ccaaaagatg cttacgacca
     3061 cgtgactgac cgtgcaggac acgatttgcg ctatgctatt gacgcaagca aacttcgtga
     3121 cgagcttggt tggacaccac aattcacaga cttctctcaa ggtttggaag agactatcca
     3181 gtggtataca gataaccaag actggtggaa agctgaaaaa gaagctgttg aagccaacta
     3241 tgctaagaca caggaagtta ttaaataaga ttattaaagg ctagggctct tgcccaagcc
     3301 tttcttgaaa taaggagcaa atatgatttt aattacaggt gcaaatggtc agttgggtac
     3361 agaattgcgt tatctcttgg atgagcgtgg tgttgagtac gttgccgctg acgtagcaga
     3421 aatggacatt acggatgcag ataaagtaga tgccttcttt gcagaagtaa agccaagcgt
     3481 tgtataccac tgtgcagcct acacagctgt tgatatggca gaggatgaag gcaaggaact
     3541 caactacaag attaacgtaa caggttctga gaatgttgct aaagcggcag ctaaatacgg
     3601 tgcaaccctt gtctatatct caacagacta tgtcttcaat ggtgatttgc cagtcggcaa
     3661 agagtggcaa gtagatgacc aaccagatcc tcaatctgaa tacggtcgca ccaagcgcaa
     3721 gggtgaggaa gcagttgaga aatttgctga caaattctac actgttcgta ctgcttgggt
     3781 ctttggtaac tacggtaaaa actttgtttt cactatgcaa aatcttgcgg aaaaccgcga
     3841 tactttgacg gttgtcaatg accaacacgg tcgcccaact tggacccgta cccttgcgga
     3901 attcatggta cacttggtgg acaccaagca agcatttggc tactaccact tgtcaaacga
     3961 tgcagcagaa gatacgactt ggtttgactt cgcgacggaa atcctcaagg ataccaacac
     4021 caaggtattg ccagtggatt ctagccaatt cccagccaag gcaaaacgtc cattcaactc
     4081 aaccatgagt ttggataagg caaaggcgac aggttttgtc atcccaactt ggcaagaagc
     4141 tttggaagca ttttacaaac aagaaaagaa atagtttaca ggagatgtgt atgaaaaaga
     4201 aagcgattgt taagtcgttg ttgatgtcag gaatttttct ggctttacta ggaggtgcta
     4261 cattactgtc cggagctgtt ccagttgtag cagcagagac aagtcaaagt acgacctatc
     4321 atttaactga tgatgaaaaa gttgccgtac gtgaatatat tcaagctaaa atgactatcg
     4381 atatgcaaga atatagattg gcgtttcttg agggaatgat ggaagaaatg gcttcgggta
     4441 gtgctgaagc tgcgtgggat gaagaaattg cagacttgaa ggcaaactta acagcagagc
     4501 aagttgttgt tttagatgaa ctcgaagcaa atttaattgg tagcatagcc caacattacc
     4561 attacttatt tgagacactt acagtcgctg gaaaaagcgg acgagaagaa gcggcggcta
     4621 tagtttctaa gtacgagtct gaagatgatg caagtactcc tgaagccgaa ttggctgcat
     4681 tgaaatacgc tagagaagtt atcgttgaac tactgaataa agagtcggca gcgattgata
     4741 attatattgc ttatgcagaa gcaactggac aagaattagc tggattattg gaaagtggaa
     4801 actctaattt agaatctatt acatctgcaa ctataggata tggtcaagct cttgcaactg
     4861 cttcgcaacc aaaatttccg tatgactttt cagaaatgga ccgacagatt gcagaactaa
     4921 ctgctagtct acaatcaaaa gtcgaggata aaagtacagc taatattgaa aatactgggg
     4981 cacaaacaag tcaaagcgtt acaaatgact caaatgattt gcaagatgtt ccaggtcaag
     5041 ggggcggtca gatttctgat gtagctacag gcaaaggcaa tatttccgaa gcaggtcaga
     5101 aaaaggttat cccaaatgat aatgctaagg tattgccaaa aacttcaggg aaatctagtc
     5161 ttccattaac tgtactagga ctcataacaa tttttgctgg ttggttattg acaaagaagc
     5221 aagaagaaaa atagaagatt agtgtaattg catctatttt gagaaatata gttgttttta
     5281 catgtgaaat acataaagga gatgtttgtg aaaaaaagaa cgttattatt tctttctttg
     5341 tgtgcatccg cgttgaatgc tcagcttgtt caagcggata tggtaaatgc cccatctagt
     5401 caagtttctt catctcaggt tgctgaaact ggcgggcagt tatctgtcgt tgatgaggct
     5461 ggtcagatta aagctattct atcgaacatt caaggggaaa ttattggtgt tacagcccag
     5521 tttagctctg aaacaaatag cggcattact gtcacattct caatggatga gcagggtaga
     5581 tacgtagcgg ttttggatcg gtctgcattt gcggaggaag accaagtctt ttcgctgaag
     5641 ttaacagcac aattaacaga tggaagtttt cagaccttat cagattatag tttcgagtgg
     5701 aagaaggatg tcgtaagcgc ggctgagaag cctactgctt tggataatag tgatgcaact
     5761 ccgtctaaaa ttgaggagga agcaacttcg actactacaa gctcaacggt taattctagt
     5821 ttgacagcag gtgcaacaag tagtacttcg aattcgctga caagaagttc ttcaaatacg
     5881 attgcaggaa gttcgaatgg ctctacaagt gttccaagtg ctcgagtcag tacagcttcc
     5941 agttcggtca atgttaca
//
LOCUS       DASFRC010000129         5951 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.129, whole genome shotgun sequence.
ACCESSION   DASFRC010000129 DASFRC010000000
VERSION     DASFRC010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5951)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5951)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5951
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.129"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            114..1244
                     /locus_tag="U1087_001724"
     CDS             114..1244
                     /locus_tag="U1087_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEM4756175.1"
                     /translation="MNTSFKEKVILILLSGATLLAVLNWSSIYGAIQQLLGSMNSLFI
                     GAIFAFILNVPMKKLEDQFEKISFLKKSKRSLAIVGVLIGFALIVTGLVVIVLPTLVT
                     TVSELVSVSSTAIPKSVNALTNFLESNGLLSGQIGDQIASFLDQLKNLTLISSLVTQI
                     LSGLVSNVTGIFSNTMTLIMAFFFTLAILGSKEHLQAMTRKFLQATLPEKAVRVVNYI
                     GEVIVDTYDRFLMSQIVEACIIGILVFVSYSLSGIPYASMAGILAGVLSFVPYIGPFS
                     ACLISALFVAVQNPLLALWSIVLFQILQLIEGNVIYPRVVGQSVGLPTLFTLAAALIG
                     GNLFGLLGMVFFTPIFAVVYRLVREWVASRLKKQDELLVESE"
     gene            1316..1807
                     /gene="nrdR"
                     /locus_tag="U1087_001725"
     CDS             1316..1807
                     /gene="nrdR"
                     /locus_tag="U1087_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor NrdR"
                     /protein_id="HEM4756176.1"
                     /translation="MRCPKCQSLKSSVIDSRQAEDGNTIRRRRSCDQCGQRFTTYERI
                     EEKTLVVVKKDGTREQFSREKIFNGIIRSAQKRPVSTDDIDEVVNRIEQKVRAQGDSE
                     IESDVIGNLVMEELVALDEITYVRFASVYRSFKDVGELENLLKQMISKGSKVKPGKKD
                     ETK"
     gene            1794..2945
                     /locus_tag="U1087_001726"
     CDS             1794..2945
                     /locus_tag="U1087_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation/membrane attachment
                     protein"
                     /protein_id="HEM4756177.1"
                     /translation="MKPNDLFAYIKISPFTPDIVSLSQCYQPIIGFDALALYYYFYSF
                     ADQGQGRYKWTVILNHMDFGMNRLEKALDVLTAMGLLELYRADELTGLALQAPLTVKS
                     FLATPLYKNLLARKIGESSMENLLVHQPNQEQNISKTFSQVFTMDGQAPVIFEPKHDF
                     DWSAFKALMAKDKLLFQDEAEDIIALSYIAEQAGWTWLETYRQAKATAIGQTISTKRL
                     QQSRQSLPTESTNLTAQEQAIVREAKSKSSLTFLSFIKEQRKAAVTGTERKCLTDLAN
                     LGLLDEVINVLVLYTFNKVDSANLNEKYAMKLGNDFSYKGIGSAEAAVLYLRELKTGQ
                     AVTKSSQPQKSNVPEWSKEEVVVDNSPEAQARMEALRKRMLENESKGGS"
     gene            2945..3844
                     /gene="dnaI"
                     /locus_tag="U1087_001727"
     CDS             2945..3844
                     /gene="dnaI"
                     /locus_tag="U1087_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein DnaI"
                     /protein_id="HEM4756178.1"
                     /translation="MKSVQDRLSQATNPSPKSYQQLYQEIVSDPEVAAFIKKEGLTQQ
                     EITLSISKFLEYISQRDLFVKRDQAYIAKGYQPVLVMNEGYADVSYLETEELVEYRRL
                     EAIKNRIQLINMPLALKKVTGEDLDFTDINREEVYDAIATFVKHFDEQPKGLYIYGNF
                     GIGKSYLMAYLAHRLSIIHHLSTTMLHYPTFVVDIKNAIKDGSVKERIDEIKMAQVLV
                     LDDIGAEQHSPWVRDDVLQVILQYRMQENLPTFFTSNFSFDDLERHFASGKSGDETWQ
                     AKRVMERIRYLARDLHLKGNNRR"
     gene            3841..4554
                     /locus_tag="U1087_001728"
     CDS             3841..4554
                     /locus_tag="U1087_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003041432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent oxidoreductase"
                     /protein_id="HEM4756179.1"
                     /translation="MNETIDLMLNHTSVRRFTEEPIEAEHLQAIISAGRAASSWKNFQ
                     SYSIIVVQSEEKKQALYDLVPQPAILQAQAILLFVGDHNRASKAAQLHGSDFDVKGTE
                     NLLISSVDASLAGQNALLAAESLGYGGVFIGMIRHKALAIAELFNLPDYTYPIFCIAL
                     GRPAQNHPVKPRLESEAIVFQEEYVEQGMEVIQAYDQVQTEYAGARQTETWSERMVAQ
                     FGQAEQPETKSILEKNKLL"
     gene            4573..5883
                     /gene="der"
                     /locus_tag="U1087_001729"
     CDS             4573..5883
                     /gene="der"
                     /locus_tag="U1087_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018377046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HEM4756180.1"
                     /translation="MALPTIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYA
                     TGEWLNRKFSLIDTGGIDDVDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGVTDADEY
                     VSRILYKTNKPVILVVNKVDNPEMRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAII
                     ENLPVQEVEENPDIIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTHFT
                     DPEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIERSDVILMVINAEEGIREYDK
                     RIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKQWEDDIRDQFQYLSYAPIIFVSALTKQ
                     RLHKLPEMIKAISESQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKP
                     PTFVVFVNEEELMHFSYMRFLENQIRKAFVFEGTPIYLIARKRK"
BASE COUNT         1652 a         1174 c         1408 g         1717 t
ORIGIN      
        1 tgagatgttg acacgaactt tgaaaagaga ggttggtctt tttgtccagc ccctctttct
       61 ttttctataa gcgtgtgata aaataatagc caataagtaa gaatggaaaa gttatgaata
      121 catcatttaa agaaaaagtc atattgatac tcttatctgg agcgacattg ttagctgttc
      181 tcaactggtc tagtatttat ggggctattc aacaattatt aggcagtatg aattcgcttt
      241 ttattggagc tatttttgcc tttattctca atgttcccat gaaaaaatta gaagatcagt
      301 ttgaaaaaat ttctttttta aagaaatcca agcggtcttt ggcaattgtt ggagtattaa
      361 ttggatttgc tttaattgtg acaggactag tggtgattgt tcttcctaca ttggtgacga
      421 ctgtttcaga actggtttcg gttagtagca cagccattcc aaaatcggta aatgccctaa
      481 ctaattttct tgaatcaaat ggtcttttgt cgggacaaat cggagaccag attgccagct
      541 ttttggatca gttgaagaat ttaacactta tttcaagttt ggtcacacag attttatctg
      601 gcttggtgtc caatgtgacg gggatttttt cgaatactat gacgttgata atggctttct
      661 tcttcactct agcgatttta gggagcaagg aacacttgca ggcgatgacg agaaagttct
      721 tgcaggctac cttgccagag aaggctgtca gagtagtgaa ctatattgga gaagttattg
      781 ttgataccta tgaccgattc ttgatgagtc agattgttga ggcgtgtatc attgggatac
      841 ttgtctttgt tagttattcg ctctcaggaa ttccttatgc cagcatggct ggtattttag
      901 ctggggtcct atcgtttgta ccttatatcg gtcctttttc agcgtgtttg attagtgctc
      961 tctttgtggc ggtacaaaat ccgctcttgg cactctggtc tatcgtactc ttccagattc
     1021 ttcagttgat tgaagggaat gtgatttacc cgcgcgtggt tggtcaatca gttggtcttc
     1081 cgactctctt taccctggct gcagccttga ttggtggtaa tttgtttggt ctacttggta
     1141 tggtcttctt taccccaatt tttgcggttg tctaccgctt ggttcgtgaa tgggttgcca
     1201 gtcgattgaa gaagcaagat gaattattgg tagaaagtga gtaattctcg ctttctttta
     1261 tttttgtcat ttttatgcta tactgaagtg ataaagttta tgtaggagaa agagtatgcg
     1321 ttgtccaaaa tgtcagagtt tgaaatcaag tgtcattgat agtcgtcagg ctgaagatgg
     1381 caataccatc cgtcgtcgtc gttcctgcga ccaatgtggt caacgtttta ccacctatga
     1441 acggattgaa gagaaaactc tagtcgttgt gaaaaaggac ggaactagag agcagttttc
     1501 acgtgaaaag attttcaatg ggattattcg atctgcgcaa aaacgtccgg tatccaccga
     1561 tgatattgat gaagtggtga atcggattga acagaaggtt cgagcacaag gtgatagtga
     1621 aatagaatcc gatgtcattg ggaatttggt aatggaagaa ttggtcgcat tggatgaaat
     1681 cacctatgtg cgttttgcat cggtttatcg ttctttcaaa gatgttggag agctagaaaa
     1741 tttgcttaag cagatgattt ccaaaggaag taaggtaaaa ccgggaaaaa aagatgaaac
     1801 caaatgattt atttgcctat ataaaaatca gcccgtttac acctgatatt gtcagtctta
     1861 gccaatgcta ccagccgatt atcggttttg atgctttagc gctttattat tacttttata
     1921 gttttgccga tcaagggcaa ggacgttaca aatggactgt cattctcaat cacatggatt
     1981 ttgggatgaa tcgtttggag aaggctctgg atgttctgac tgccatgggg ctcctagaac
     2041 tctatcgtgc agatgaatta acaggtttgg cgctacaagc ccctctgacc gtaaaaagtt
     2101 ttctagcgac acccttgtat aagaacttgt tggcaaggaa gattggggag tcaagcatgg
     2161 agaatctgct tgttcaccaa cccaatcaag aacagaatat ctcaaaaaca ttttctcagg
     2221 tctttactat ggatgggcag gcaccagtta tttttgaacc gaaacatgat tttgactggt
     2281 ctgccttcaa ggcattaatg gctaaagata agcttctttt tcaggatgaa gctgaggata
     2341 ttattgcgct tagttacata gcagagcagg cagggtggac ctggttggaa acctatcggc
     2401 aggctaaagc aacagctatt ggacagacca tctcgaccaa acgcttgcag cagtcacgtc
     2461 agtcattgcc aacagaaagc acaaacctca ctgcccaaga acaagccatt gttcgtgaag
     2521 caaaatcaaa atccagccta accttcctgt cctttatcaa ggagcaacgg aaggcagctg
     2581 tgacaggaac agaacgaaaa tgcttgacgg atttggccaa tttgggtctg cttgacgaag
     2641 ttatcaatgt cttggtcctc tataccttta acaaggtgga ctcagccaat ctaaatgaaa
     2701 aatacgctat gaagctgggc aatgattttt cctacaaggg aattggcagt gcagaggcag
     2761 ctgttcttta cctaagagag ttgaagacag gtcaagctgt taccaagtcg agccagccac
     2821 agaaaagcaa tgtgcctgag tggagtaagg aagaggttgt cgtggataac agtcctgaag
     2881 ctcaggcaag aatggaagca cttagaaaac gaatgttaga aaacgaaagc aagggaggta
     2941 gctgatgaaa tcagttcaag acaggttgtc gcaggcaacc aatccaagtc caaaatcgta
     3001 tcagcaactc tatcaggaga tagtgagtga tcctgaagtc gctgctttta tcaaaaaaga
     3061 aggtttaacc caacaggaaa tcaccctctc catttctaag tttttggaat atatcagcca
     3121 gcgcgacctc tttgtcaagc gagaccaagc ctatattgct aaggggtatc aaccagtttt
     3181 ggtcatgaat gagggctatg cggatgtgtc ctatcttgag acagaagaat tggtcgaata
     3241 ccgtcgtttg gaagctatca agaaccgtat ccagctcatc aatatgcctc tggctctcaa
     3301 aaaagttaca ggtgaggact tggattttac ggatattaat cgtgaagaag tttatgatgc
     3361 tattgctact tttgttaagc attttgatga acagccaaaa ggtctttata tatatggcaa
     3421 tttcggtatt ggaaaaagtt atttgatggc ttatttggct caccgtttat caatcattca
     3481 ccacctctct accaccatgc tccattatcc gacctttgtt gttgatataa aaaatgccat
     3541 caaagatggt tctgtcaagg agcgaattga tgaaatcaag atggctcagg tcttggtgct
     3601 agatgacatc ggagcggagc aacatagtcc ttgggtacgt gacgatgtgc tgcaggttat
     3661 tcttcaatac cgcatgcagg aaaatctgcc gaccttcttt acctccaatt tctcctttga
     3721 tgatttggag cgtcatttcg cctctggcaa gtctggtgat gagacctggc aggccaaacg
     3781 ggttatggag cggattcgct atctggctcg cgatttgcat ttgaaaggaa ataaccgccg
     3841 atgaatgaaa ccattgattt gatgttgaac catacttccg tacgtcgttt tacggaggag
     3901 cctattgagg cggaacattt gcaagctatt atttcagctg ggcgagctgc atctagctgg
     3961 aagaatttcc agtcctattc cattattgtg gtgcagtcgg aggagaaaaa acaggctctc
     4021 tatgacctgg tgccccagcc agctatttta caggcccagg ccattttgct ctttgtgggc
     4081 gaccacaatc gtgccagcaa ggcggctcaa ctccatggtt cagactttga tgtcaaagga
     4141 acagagaatc tcctgatttc ttctgttgat gcgagcctag cagggcaaaa tgccctttta
     4201 gcagctgaaa gcctgggtta tggtggggtc tttatcggca tgattcgtca caaggctttg
     4261 gcaatagcag agctgttcaa cttgcctgac tatacctatc ctattttctg cattgccctg
     4321 ggtcgaccag cccaaaacca tcctgttaaa ccacgtttgg aaagcgaagc cattgtcttt
     4381 caggaagagt atgtggagca aggcatggaa gtcatccaag cctacgacca agttcagacg
     4441 gaatatgcag gagcccgtca gacagaaacc tggtccgagc gtatggttgc ccagtttggt
     4501 caggctgaac aaccagaaac aaagtctatc ttagaaaaga ataaattatt gtaaactaga
     4561 agaggaggag ctatggctct accaactatc gccatcgttg gccgtcccaa cgttggtaaa
     4621 tcaacactat ttaaccgtat tgcgggggaa cgtatttcta tcgtagaaga cgttgaaggt
     4681 gtgacccgtg accgtattta tgctactggt gagtggctca accgtaagtt ttccttgatt
     4741 gatacaggcg gtattgatga tgtggatgca ccgttcatgg aacaaatcaa gcaccaggct
     4801 gagattgcta tggatgaggc ggatgtcatt gtctttgtcg tatcaggtaa ggaaggtgtg
     4861 accgatgccg atgaatacgt atcgcgtatc ctttataaga ccaacaaacc agttattttg
     4921 gttgtcaata aggtcgataa ccctgaaatg cggaacgaca tctacgattt ttattcactc
     4981 ggtcttggag atccttatcc agtatcttct gtacacggta tcggaacagg ggatgtcttg
     5041 gatgctatca ttgaaaatct gccagtccaa gaagtagaag aaaatccaga cattatcaag
     5101 ttcagcttga ttggtcgtcc aaatgttggt aaatccagtt tgattaacgc tattttgggg
     5161 gaagagcgcg tgatcgcctc gcctgttgcg ggaacgaccc gtgatgccat tgatacgcac
     5221 tttacagacc cagaagggca agaatttacc atgattgata ccgcaggcat gcgcaagtct
     5281 ggtaaggtct atgaaaatac ggagaaatac tctgttatgc gtgccatgcg tgccattgaa
     5341 cgctcggatg ttatactcat ggtcatcaat gcagaagaag gcattcgtga gtacgataaa
     5401 cgtattgcag gttttgccca tgaagctggt aagggaatga ttatcgtggt caacaagtgg
     5461 gatacgcttg aaaaagacaa ccataccatg aagcagtggg aagacgatat tcgtgaccag
     5521 ttccaatact tgtcttacgc accgattatc tttgtatcag ccttgaccaa gcaacgcttg
     5581 cacaagttgc ctgagatgat taaggccatt agcgaaagcc agaatacccg tattccgtcg
     5641 gctgttctca atgatgtcat catggatgcc attgccatta acccaacacc gactgacaag
     5701 gggaaacgtc tcaagatttt ctatgcgaca caagttgcga ccaaaccacc gacctttgtg
     5761 gtctttgtca acgaagaaga gctcatgcac ttctcctata tgcgtttctt ggaaaatcaa
     5821 atccgtaagg cctttgtatt tgaaggaaca ccgatttatc tgattgcacg gaaacggaaa
     5881 taaggctggg caaaaagtcc agccacgctt ctcagagttc gggtcaacat ctcagcgcag
     5941 tggttgattg g
//
LOCUS       DASFRC010000130         5938 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.130, whole genome shotgun sequence.
ACCESSION   DASFRC010000130 DASFRC010000000
VERSION     DASFRC010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5938)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5938)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5938
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.130"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(57..614)
                     /locus_tag="U1087_001730"
     CDS             complement(57..614)
                     /locus_tag="U1087_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM4756181.1"
                     /translation="MEIRLAHPNEMEAIVDILEDARAFLATSGINQWQGEYPNKENIF
                     DDILSGRGYVGIVDGKVAAYAAVHRGQEAEYEAIYEGKWQHNHPVYTTFHRIAAADEF
                     RGQGIIQTFLQGLIEGQKGPDFRCDTHEQNKTMQHILKKLGYVYCGKVPIDGERLAYQ
                     KIKQKSERSLYQEISEDDRWLLGNN"
     gene            complement(614..1705)
                     /gene="serC"
                     /locus_tag="U1087_001731"
     CDS             complement(614..1705)
                     /gene="serC"
                     /locus_tag="U1087_001731"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HEM4756182.1"
                     /translation="MTIYNFSAGPAVLPKPVLERAQAEFLDYNGSGMSVLEMSHRSKD
                     FDDIIKGAEATLRELMAIPDNYKVIFLQGGASLEFTMIPLNFAQGKKAYYLVGGSWGK
                     KAYTEAVKLSKTIAFEPILLGSTEDITYAELPTFDKNDIDPTAAYVHLTTNNTIEGTT
                     VYGIPDTNGVPVIADMSSNILAARYNVEDFAMIYAGAQKNIGPAGVTVVIVREDFLND
                     QPMLSSMLDYRIQAENDSLYNTPPAYSIYISKLVFEWVKEIGGVDEMEKINREKSGLL
                     YDYIDQSNFYTNPVRKKEERSVANIPFVSPSEELDAKFVKEATTAGFKNIKGHRSVGG
                     MRASLYNAFPHQGVVELIEFMKKFAAENA"
     gene            complement(2175..3038)
                     /gene="rsmI"
                     /locus_tag="U1087_001732"
     CDS             complement(2175..3038)
                     /gene="rsmI"
                     /locus_tag="U1087_001732"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HEM4756183.1"
                     /translation="MKVQKSFKGQTSFGTLYLVPTPIGNLQDMTFRAVQILKEVDIIA
                     AEDTRNTGLLLKHFEVETKQISFHEHNAHEKIPVLIDWLKSGQSIAQVSDAGLPSISD
                     PGHDLVGAAIAEDIPVVALPGASAGITALIASGLAPQPHIFYGFLPRKSGQQKEFFQE
                     KKTYPETQIFYESPYRVADTLENMLTVYGDRQVTVVRELTKLYEEYQRGSISELLEYL
                     EENPLKGECLIIVEGAGEEVYPSADEVDLKAEVEREIASGIKPNQAIKEVAKRYQLKK
                     QEVYDIYHGLG"
     gene            complement(3040..3357)
                     /gene="yabA"
                     /locus_tag="U1087_001733"
     CDS             complement(3040..3357)
                     /gene="yabA"
                     /locus_tag="U1087_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication initiation control protein YabA"
                     /protein_id="HEM4756184.1"
                     /translation="MDKKEIFDALDDFSQNLLTTLAEVDAIKKHLQGVIDENTTLRLE
                     NSKLRERLEKEDKTGHKSSNFGKENLENIYEDGFHICTFSYGQRRDNDEPCMFCVELL
                     NRD"
     gene            complement(3377..4261)
                     /locus_tag="U1087_001734"
     CDS             complement(3377..4261)
                     /locus_tag="U1087_001734"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HEM4756185.1"
                     /translation="MKIEELRNLQPNVFQRFVTILEQRRLVHAYLFSGDFASFDMAIF
                     LSQSLFCQEKEGVLPCQKCRSCRLIEANEFSDLTVIAPQGNVIKTDTIRELVKNFSQS
                     GFESNKQVFIIRDAEKMHANAANSLLKVIEEPQSAIHILLLTNQEEAVLPTIKSRTQI
                     IGFPKNIPAMERMLEEEGLLKTQANLLAQLVSSQEEAKKLAENKNFLDLMGQTKKFTD
                     LLLVEPTRAYLQVGILVSLAVEKAEQGRLFDLLSLILSEKMMESANVREKMDAVLKAK
                     KMWQANVSLQNSLEYITL"
     gene            complement(4258..4896)
                     /locus_tag="U1087_001735"
     CDS             complement(4258..4896)
                     /locus_tag="U1087_001735"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004193056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HEM4756186.1"
                     /translation="MRNGFFITFEGPDGAGKTTVLQQLLPALQELGPEVVTTREPGGV
                     AIAEEIRNIILNPANTEMDDKTELLLFIAARRQHLKEKILPPLAQGKLLLIDRFIDSS
                     IAYQGFGRGLDIGDIHWLNQFATDGLKPDLTLYFDIDTEEGLARIARNADRDVDRLDM
                     EKADMHRRVRQGYLNILEQEPERFVKIDASQPLEAVVADALAVIKKRFAERT"
     gene            5071..5937
                     /locus_tag="U1087_001736"
     CDS             5071..5937
                     /locus_tag="U1087_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEM4756187.1"
                     /translation="MVRLKNILLILLGAGLFAFGLNYLIMPNRLFEGGATGLTLIIYY
                     LFHIQPWIMNIVINIPLFILGWKILGKKTLYLSILGTFSVTFWLAIFEKIHFSINLQQ
                     DLILVSILGGILMGLGLGTIFRAGGTTGGSDIIARIGHKFLPYSIGQIILAVDILILT
                     LIVIVFKDLRTVLYTLMMVAIASKVIDFVTEGGYGSKGVMIVSQKSDQLAQAIDCEIE
                     RGVTFIKAQGFYSKADVNMIYSVIYKSQLQEMKELIHRIDPHAFITITDAHEVLGEGF
                     TLDRDKKPIERH"
BASE COUNT         1691 a         1292 c         1061 g         1894 t
ORIGIN      
        1 cgaaccttga gaagtgatat gaagcttttt cccggtcctt ttctttcttt atttcattaa
       61 ttatttccga gtaaccaacg gtcgtcttca ctgatttcct ggtaaagact ccgctcgctc
      121 ttttgcttga ttttttgata ggctagacgt tctccatcta ttgggacttt accacaatag
      181 acatagccta atttttttag aatgtgctgc attgtcttat tctgctcgtg ggtatcacag
      241 cggaaatccg gtcctttttg accttcaatt aaaccttgca aaaaagtttg tatgattcct
      301 tgaccacgaa attcgtcagc tgctgcaatt ctatgaaatg ttgtatatac aggatgattg
      361 tgctgccatt ttccttcata tatggcctca tattctgctt cttgaccacg atgaacggcg
      421 gcataggctg ccaccttacc gtcaactata ccaacgtaac ctctgccaga aagaatgtca
      481 tcaaagatat tctctttatt aggatactct ccctgccatt gattgatacc agaggttgct
      541 agaaatgcac gagcatcttc aagaatatcg acaatagcct ccatctcatt tggatgtgct
      601 aatctaattt ccattaagca ttctccgctg caaatttttt catgaattca atcaattcaa
      661 ccacaccttg atgtgggaaa gcattataga gcgacgcccg catcccacct actgaacggt
      721 gacctttgat gtttttaaaa ccagctgttg ttgcttcttt gacaaacttg gcatctaatt
      781 cttcacttgg tgagacaaaa ggaatgttcg ctactgaacg ctcttctttt ttgcgaacag
      841 ggtttgtata gaaattagac tggtcgatat agtcataaag caaaccagat ttttcacggt
      901 tgattttttc catctcatca acaccaccaa tttcttttac ccattcaaag acgagtttag
      961 aaatatagat agaataagct ggtggcgtat tataaagaga gtcattttct gcttgaatac
     1021 ggtagtccaa catgcttgaa agcattggtt gatcattgag gaagtcctca cgaacaatca
     1081 ccaccgtcac accagcagga ccaatatttt tctgagcgcc agcataaatc atggcaaaat
     1141 cttcaacatt atagcgagct gctaagatgt ttgaagacat gtcggcaatg actggcacac
     1201 cattggtgtc aggaatacca taaactgttg ttccttcaat agtgttattt gttgtcaaat
     1261 gcacgtaagc agcagttgga tcaatatcat ttttatcgaa ggttggcaat tctgcatagg
     1321 taatatcttc cgttgatcca agcaaaattg gttcaaaggc aattgtttta gacagcttca
     1381 cagcctcagt ataggctttt ttaccccatg agccacctac aagatagtag gctttcttac
     1441 cttgagcgaa gttgagagga atcattgtga attccaaaga agctccacct tgcaagaaaa
     1501 taaccttgta attatctgga atggccatca attcacgaag cgttgcctca gcacctttaa
     1561 taatatcatc gaagtccttg gagcgatgcg acatctccaa aacgctcatt cccgaaccat
     1621 tgtagtccaa gaattcagct tgggcgcgtt caagtactgg ttttggcaat actgcaggac
     1681 ctgcagagaa gttgtagatt gtcataaaat ccctccatta agttagtctg ttcattatat
     1741 cacaaatatt cagacaattc cataaaatat gattattttg taaaaacatt cggatttctt
     1801 atatttattc tactttctaa agaacctctt acttttagcc ataaacgagg cgcttgcctc
     1861 acagggattc atcaggtttc aatgaaaatt ttatgaccag atttgactgt ttggggagtg
     1921 tcgccaattg ctatctgcat attaatactc aatgaaaatc aaaagtagct tagctgggat
     1981 atagttgaag gctggaagta tagagaactg tgttcgcgtc attaagccga agatagaact
     2041 ctgttccttt ctcatttcaa ggtaacagac tgaaaagatc cactggagct tttcactcat
     2101 caaggctctt gacaacggat aattttgatt ttcgaagagt ataagcttgc ataaacatac
     2161 aaaaaaacta ggtcttaacc tagtccatga tatatatcgt atacttcttg ttttttgagt
     2221 tggtagcgtt tggccacttc tttgatagcc tgattaggtt ttatgccact tgcaatttcc
     2281 ctttctacct cagccttcaa gtctacttcg tcagcagaag gatagacttc ctcaccagca
     2341 ccctcgacaa taatcaagca ttctccctta agtggatttt cttccaaata ctctagtaat
     2401 tcggaaatgc ttcctctctg gtattcttcg tataacttgg tcaattctcg aacaactgtt
     2461 acctgacgat caccataaac tgtcaacata ttttctaagg tatctgccac acgatatgga
     2521 gattcataga aaatttgcgt ctcaggatag gtcttttttt cttggaaaaa ttctttttgc
     2581 tgccccgatt ttctcggtaa aaatccataa aaaatatgtg gctggggtgc caaaccagat
     2641 gcaatcaagg ctgtaattcc tgccgatgct cctggaagtg ctacaacagg aatatcttcc
     2701 gcaatcgctg cccctaccag gtcatgacca ggatccgaaa tggaaggcag gcctgcatca
     2761 gaaacttgcg caatggactg accagatttg agccaatcaa tcaaaactgg aattttttca
     2821 tgggcattgt gttcatgaaa ggatatttgc ttggtttcta cttcaaaatg tttgagtagg
     2881 agtcctgtat ttcttgtatc ttccgctgca attatatcca cttctttcaa aatctgaaca
     2941 gctcggaatg tcatatcctg taagtttcca ataggcgttg gcaccagata taaagtccca
     3001 aaactcgtct gtcccttaaa tgatttttgt actttcatcc taatctcgat tcaataattc
     3061 tacacagaac atacaaggtt catcattatc cctacgttga ccataagaga aggtacaaat
     3121 atggaaacca tcttcgtaaa tattctccaa attctcctta ccaaagttgg aagatttatg
     3181 gcctgtctta tcttcttttt ccaaacgttc gcgcaacttg gaattttcca agcggagggt
     3241 cgtattttca tcaataactc cctgtaaatg ctttttgata gcatccactt ctgccaacgt
     3301 ggttagaaga ttctgcgaaa aatcatctag ggcatcaaaa atttcttttt tatccattat
     3361 ctccctttct tttattttac agagttatat actctagact attttgtaga cttacgtttg
     3421 cctgccacat cttcttagcc ttaagaacag catccatttt ttcacgtacg tttgccgatt
     3481 ccatcatttt ctcagataat atcagactca gaaggtcaaa caaacgtccc tgctcagctt
     3541 tttccacagc taaagacact aggattccaa cttgcaaata agcacgtgta ggctccacca
     3601 agagcaagtc tgtaaatttc tttgtctgtc ccatcaaatc taaaaagttt ttattttctg
     3661 ctaacttttt cgcttcttct tgacttgaaa ccagttgagc taagagattc gcttgtgttt
     3721 ttaacaagcc ctcctcttct aacattcgct ccatggccgg aatattttta ggaaaaccta
     3781 taatctgtgt ccgactcttg atagtaggaa ggacagcttc ttcctgattg gtcaataata
     3841 agatgtgaat agctgactga ggttcttcaa tcacttttag caaagagttg gctgcgttag
     3901 catgcatttt ctcagcatca cgaataatga aaacctgctt attggattca aatccagatt
     3961 gtgaaaaatt cttaactaat tcacgtatcg tatctgtttt gataacattt ccctgcggtg
     4021 caataacagt aagatctgaa aactcatttg cttcaattag acgacaagac cgacacttct
     4081 gacaaggaag gacgccttct ttctcctgac aaaataacga ttgactgaga aaaattgcca
     4141 tatcaaaact agcaaagtca cctgaaaata gataggcatg caccaaacgt ctctgctcta
     4201 aaattgtcac aaaacgttga aatacattgg gttgtaagtt tctaagttct tcaatcttca
     4261 tgttctttct gcaaaccgtt tcttaatgac cgccagagca tctgcaacaa cagcctctag
     4321 tggctgactg gcatcaatct ttacaaaccg ctctggttcc tgctctaaaa tattaagata
     4381 gccttgacgc acccgtctat gcatatctgc tttttccata tccaagcgat ccacatcacg
     4441 gtcagcattg cgggcaattc gagccagccc ctcttctgta tcaatatcaa aatagagggt
     4501 taaatctggc tttaaaccat ctgttgcaaa ctggttgagc caatgaatgt cacctatatc
     4561 caacccccgt ccaaatcctt gataggcaat agaggaatcg ataaaacgat caatcaagag
     4621 caatttcccc tgtgccaagg gtggaagaat cttctctttc aaatgctgac gtcgtgctgc
     4681 aatgaacaat aacagctccg tcttatcatc catttcagta tttgcagggt tcagaataat
     4741 attgcgaatt tcttctgcaa tagccacccc acctggctct ctagttgtga ctacttctgg
     4801 ccccaattcc tgcaaggctg gcaataactg ttgcaatacc gtcgttttcc ctgccccatc
     4861 tggaccttca aatgtaataa aaaaaccgtt tctcatcttt ccctcgctct tagtaccagt
     4921 atgcacagtt cagcacttca cttgtgaaga ctggttctta gatattcatt ccattttacc
     4981 aaaaattagt caaaaaatca cttgaaaatt gacttgtttt taaggagaaa atcttttaaa
     5041 attgatatat acacatattc ggagatgctt atggttcgtt tgaaaaatat tttacttatt
     5101 ttgcttggtg cagggctatt tgcctttggg ctaaattatt taatcatgcc caatcgtctg
     5161 ttcgagggtg gcgcaactgg attgacgctg attatttact accttttcca tattcaacct
     5221 tggataatga acattgtgat taatattcca ttgttcatcc tcgggtggaa aatactcgga
     5281 aagaagactc tctatctcag tatcttagga acctttagcg ttaccttttg gttggccatt
     5341 tttgaaaaaa tccatttttc aatcaatcta caacaagatt tgatactcgt tagtatcctg
     5401 ggtgggattc ttatgggact aggattagga accatcttcc gtgctggcgg aacgactggg
     5461 ggaagcgata tcattgctcg tataggtcat aaattcctac cttactccat tggacaaatc
     5521 attcttgcag ttgacatcct catcctaact ctgattgtta ttgtttttaa agacctccga
     5581 acagttctat atactttaat gatggttgct attgcttcca aggttattga ttttgtcact
     5641 gagggcggat atggtagcaa gggggttatg attgtttctc aaaaatctga ccaattggct
     5701 caggctattg attgtgaaat cgagcgtggt gtcaccttta tcaaagcaca aggtttctac
     5761 agcaaagccg atgtcaacat gatttactcg gtcatatata agagccaact ccaagagatg
     5821 aaggagctta ttcatcgtat tgacccccac gcatttatca ccattacaga cgcacatgaa
     5881 gtactcggtg agggatttac tttagatcga gataaaaaac caatagaacg ccattaaa
//
LOCUS       DASFRC010000131         5927 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.131, whole genome shotgun sequence.
ACCESSION   DASFRC010000131 DASFRC010000000
VERSION     DASFRC010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5927)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5927)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5927
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.131"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(33..815)
                     /locus_tag="U1087_001737"
     CDS             complement(33..815)
                     /locus_tag="U1087_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-2 family transporter protein"
                     /protein_id="HEM4756188.1"
                     /translation="MKKYISLYLYNIKVYMMAQMSFRVDFFIGLFSSLIEQIVYLIFL
                     NILFGNIKEIAGFNYGQMLFIYGIATVGRSIHLIFFDNLWMFGSRYIRQGEFERLLLM
                     PVNPLFQLICERIQPQGIGTTLIGTLALAQASKELGMEWSLGKLALLIFIAICIGLLY
                     AAIQLGPTALAFWIVESFPLTMGIFALNQMAQYPLNIYPKIIQILLIFVFPYAFTAYF
                     PALYFLDLSMWGLALPLVVLVLFTINYKLFRYGMTKFTSVGN"
     gene            complement(817..1596)
                     /locus_tag="U1087_001738"
     CDS             complement(817..1596)
                     /locus_tag="U1087_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-2 family transporter protein"
                     /protein_id="HEM4756189.1"
                     /translation="MRKYLYMTRLTMMNAMQYKAFFLATFVSLTVKILVALYVWKTIF
                     FTQSEVNGFTLQTFTTYIIFANLLANLNSFSLGEDLSYSIIKGSIAGEFLRPYSFILA
                     LFFKDLGNKLLELIKFAIVFIGIILVHQDFYLPDGKTILLFLVSSILGMFIVQLLDMA
                     FGFLAFFTVNAWGVMLLRMGLFNLASGALLPLSFYPQAVENFLKLLPYNYAVNVPVSI
                     LLGQESDLTALGLQVIWIPILACFIALLWSQAKRRIVIFGG"
     gene            complement(1589..2572)
                     /locus_tag="U1087_001739"
     CDS             complement(1589..2572)
                     /locus_tag="U1087_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM4756190.1"
                     /translation="MIQAEHLSKTYSIIDKEVGLKGSIKAFFKPKKKSIPAVQDISLQ
                     VGKGEIIGYIGSNGSGKSTTIKMLTGVLYPDQGSVRINGLNPQENRKAVNKQIGVLFG
                     QKSHLDWNLPVQESFILHAKIYDVPDKVFKERLAVLIELLDLADIMKQPIRNLSLGQR
                     VRCEFAAIFIHQPAVVFLDEPTIGLDASVKETIRSFIRYMNQEYQTTFLITSHDMKDI
                     ESLCERIFIIDKGKKVYDGSLTVLKERFSTVKTILFSTEKPIEKDLQLEGWEFIRKDD
                     FHFEIHYQSKVWTSAQVIEQVFNHYAIEDVTMKELEIETMVRQIYEEGIHA"
     gene            complement(2657..3190)
                     /locus_tag="U1087_001740"
     CDS             complement(2657..3190)
                     /locus_tag="U1087_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM4756191.1"
                     /translation="MGTDNRKERTRQAILEAMVTCLESQGFNDITTTHLAQTAGISRS
                     SFYTHYKDKYELIDSYQQGLFHKLEAIFDRYDGNRQSSFLEIFELLYREKLLSALLTH
                     NGTQEIQNFLINKVRLLVANDLAERLGKENLSQLEKEYSSIYFSHAFFGIMQVWIKNG
                     KQESPQYMTDFLIKMLP"
     gene            3316..5775
                     /locus_tag="U1087_001741"
     CDS             3316..5775
                     /locus_tag="U1087_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhgE/Pip domain-containing protein"
                     /protein_id="HEM4756192.1"
                     /translation="MLQKVKNIFKKPMTLVTIIGIACVPALYNISFLTSMWDPYGRLD
                     QLPVAVVNQDQSASFQDKNLTIGDDMVDNMKESKSLDFHFVSEKNAEKGLEEGDYYMV
                     ITLPKDLSEKASSLLTNQPEPLTISYQTSKGHSFVASKMGESAMEKLKTSVSETITKT
                     YTTAVFDSMREIQTGMVEAADGSQQLTDGASQLESGSQTLSNGLTTLTTSGQALVTGA
                     NQLAAGVVSYTDGVNQAATGSQTLSSGLTTYTNGVASLASGAEQLNANSSQLIAGVGQ
                     LQSGASQVEQLVTGANQLQAGLEQLASSTSLSAEQSSQIQALLTGLPQLQAAINQLND
                     SLSSIGGLTVDTSSLSNLLTEMGSQTQGLLTAAQADKTASIEALQATATYQNLTADQQ
                     AELVGALQNSSSATATVAQTILGQLSQLSQALSSLQSLSGMATQMSQLQSAVGQINTA
                     ANQALPGATTAIENLSSGLSQVNTALNQQVLPGTQALTSGVSQLQTQLSNGASQLMSG
                     VTAYTAGVAQLAEGGAQLVANNSSIQSGGGQLTSGLATLASNSNQLVSGSGQLASGSQ
                     QLIAGAEQLASGGQTLTSGITSLRTGSETLTNSLSSASQQLSVVSVEDKNAQAVSQPV
                     TLEHSDQDDVKTNGVGMAPYMVSVALMVAALSANVIFVKHIDNRSYKNRWDWAKGKLL
                     LNGIIASLAAVILYGVLRLIGIEPAHPMATLGLILLASWTFMALVTALVGWNNRFGSF
                     ASLIILLLQLGSSAGTYPIELSPRFFRVIQPYLPMTYSVSGLRQTISMVGNSSHQVWI
                     LSLFLVGFMGLGLLIYNQKDE"
BASE COUNT         1785 a         1184 c         1323 g         1635 t
ORIGIN      
        1 aacaaggtct ctcaagcact gagagccttg ttttaatttc caacactggt gaatttggtc
       61 ataccatagc ggaagagttt gtaattgatg gtaaataaga ctaggacaac cagtggcaga
      121 gccagtcccc acatagacaa gtctaagaag tagagggctg ggaaataggc tgtaaaagca
      181 taagggaaaa caaatatcag caggatttga atgatttttg gatagatatt gagtgggtat
      241 tgagccatct gattgagggc gaaaattccc atggtcaaag gaaatgattc cacaatccaa
      301 aatgctagag cggttggacc gagttgaatg gctgcataga gtagcccgat acaaatggca
      361 ataaagatta gtaaggctag ttttccaaga ctccattcca tacccagttc cttggaagcc
      421 tgggctagtg caagggtacc gatgagggtt gttccgattc cttgtggctg gattcgttca
      481 cagataagtt gaaaaagtgg gttcacaggc atgaggagga ggcgttcaaa ttcgccttgt
      541 cggatgtagc gactgccaaa catccagaga ttgtcaaaga aaatcaagtg aatggagcgt
      601 ccgacggtcg ctattccata gataaagagc atttgaccgt agttgaaacc agcgatttcc
      661 ttaatatttc caaagaggat gttgaggaaa atcaggtaga caatttgttc aatcaaagag
      721 gagaaaagcc cgatgaagaa gtccacccga aaggacatct gggccatcat gtagaccttg
      781 atgttatata gatagaggct gatatatttc ttcatgttaa cctccaaaaa tgacaatacg
      841 acgcttggct tgggaccaaa gtagagcgat gaagcaggct aaaatgggta tccatataac
      901 ttgcaatccc aaagcagtta gatcgctttc ctgtcctagt aaaatggaaa ctggaacgtt
      961 aaccgcataa ttatagggaa ggagcttcaa aaagttttcc acagcctgtg gatagaagct
     1021 gagtggcaaa agcgctccag aagctagatt gaaaagtccc attctcagga gcatgactcc
     1081 ccaggcattg accgtaaaaa atgctaagaa gccaaaagcc atatccagta attgaacgat
     1141 aaacatcccg aggatggagc taactagaaa gagtaaaata gtttttccgt caggtagata
     1201 aaaatcctga tgaacaagta tgataccgat aaatacgata gcaaatttta tcagttccaa
     1261 gagcttattt ccaaggtctt tgaaaaagag agctaggata aaggaatagg gtctgagaaa
     1321 ttctccagca atgcttcctt ttataatgct gtaggataaa tcttctccaa gtgagaaaga
     1381 atttaaattg gctagtagat tcgcaaagat gatatatgta gtaaaggttt gcagggtaaa
     1441 gccattgact tctgattgag tgaagaaaat ggttttccag acatagagag ctaccaaaat
     1501 cttcactgtc agtgaaacga aggtcgctag aaagaaagcc ttatactgca tagcattcat
     1561 catggtcagg cgggtcatgt agagatattt acgcatggat accctcctca taaatctgac
     1621 gcaccatggt ttcaatttcc aattccttca tggtaacatc ttcaattgca taatgattga
     1681 aaacttgctc aatcacctgg gcgctggtcc agaccttgct ttggtagtgg atttcaaagt
     1741 gaaaatcgtc tttacgaata aattcccagc cctccaattg caaatctttt tcaattggtt
     1801 tttctgtgga gaagagaatg gtcttcactg tggaaaagcg ttctttgagg acggtcagtg
     1861 aaccatcgta gaccttcttg cccttatcaa tgataaaaat ccgctcacag aggctctcga
     1921 tgtccttcat atcatgggaa gtaatcaaaa aggtggtctg gtattcttga ttcatatagc
     1981 ggatgaagga gcgaatggtc tccttgacgc tggcatccaa gccgatggtt ggttcgtcca
     2041 aaaaaacaac ggcaggctgg tggataaaga tagccgcaaa ttcacagcga acccgttggc
     2101 cgagtgacag attacggatt ggttgcttca taatatcagc caagtccaat agctcaatca
     2161 agacagccaa tcgctctttg aataccttgt ctggaacatc ataaattttt gcgtgaagga
     2221 taaaagattc ttggacaggc aagttccaat ccaagtgaga tttttgtcca aagagaacgc
     2281 cgatttgctt attgacagct ttgcggtttt cttgtggatt aagaccattg atgcggacgg
     2341 agccttggtc tggatagaga acaccagtaa gcattttgat ggtggtggat ttaccagaac
     2401 cgttggagcc gatatagccg atgatttctc cttttcctac ctgtaaggaa atatcttgaa
     2461 cagcagggat tgactttttc tttggcttga aaaaggcctt gatagagcct tttagaccga
     2521 cttccttatc aatgattgaa taggtttttg aaagatgttc tgcctgaatc atatcataat
     2581 ctcctgtttg aaaacgtttg cgtaagataa ggatattata acatattccc cagaaagtgg
     2641 cggaaaaaag tcacctttag ggtaacattt ttattagaaa atcggtcata tattgaggag
     2701 attcttgctt accattttta atccatacct gcatgatacc gaagaaggca tgtgaaaaat
     2761 agatgctgct gtattctttt tccagttgtg ataaattctc ttttcctaag cgctccgcta
     2821 aatcattggc aacaagaagt cggactttat tgataagaaa attttggatt tcttgtgtgc
     2881 cattgtgagt taatagggca gaaagtaatt tttcacgata gagcaactcg aaaatttcta
     2941 aaaatgatga ttggcgattt ccatcataac ggtcaaatat agcctctaat ttgtgaaaaa
     3001 gtccctgttg gtaggagtca attaattcat atttatcctt atagtgggta taaaaactgg
     3061 aacgactgat accagcagtc tgggctaggt gagtggttgt aatgtcatta aatccttgtg
     3121 attccaggca ggttaccata gcttctaaaa ttgcctgtcg ggttcgttct ttccgattat
     3181 ctgttcccat aatttctcct tttgaacatt tttagacaca gtgtctaaaa actgttcttc
     3241 tgacttgatt ttgaaaatga tacttgtata atgtatttta tcagtttttg gacagtatgt
     3301 ctaaaggagt tgcttatgtt acaaaaagta aagaatattt tcaaaaaacc aatgactttg
     3361 gttaccatta ttggtattgc ctgtgtccca gccttatata acattagttt tctaacttct
     3421 atgtgggatc catacggccg actagaccag cttcctgtag cagttgtcaa tcaagaccag
     3481 tcggcaagct ttcaagataa aaacctcaca attggtgatg atatggtgga taatatgaaa
     3541 gagagcaaaa gtctggattt ccactttgta tcagaaaaga atgcggagaa aggcttggaa
     3601 gaaggggact actatatggt catcactcta ccaaaagatt tatcagaaaa agcatccagt
     3661 cttttgacga atcagcctga accactaacg atttcttatc aaacctccaa aggtcatagc
     3721 tttgttgctt ctaagatggg cgaatcagct atggagaaat taaagacatc tgtttcagag
     3781 acaattacca aaacctacac gactgccgtt tttgatagta tgagagaaat tcaaaccggc
     3841 atggtcgagg cggcagatgg tagccaacaa ttgacagatg gagctagtca attggagtca
     3901 ggcagccaaa cactttcaaa tggactgact actttaacga cttcgggtca agcactcgtg
     3961 acaggagcaa accaattggc cgccggagtt gtgtcttata cagatggagt caatcaggct
     4021 gcaacaggca gtcaaacact gtctagtggc ttaaccacct acacaaatgg ggtagcgagt
     4081 cttgcttcag gtgcggagca attaaatgcc aattcctctc agctcatcgc tggagtggga
     4141 caattgcaat caggagcaag tcaggttgaa caacttgtaa cgggagccaa tcaattgcag
     4201 gcaggcttgg aacaactcgc tagttcaact agtttgtctg ctgaacagtc tagtcagata
     4261 caagcactct tgacagggct tcctcaattg caagcggcca tcaaccaatt aaatgatagc
     4321 ctatcaagta tcggaggact tacagtagat acaagcagtt tatccaatct cttgacagag
     4381 atggggagcc aaactcaagg attgttgaca gcagcgcaag cggataaaac agccagcatc
     4441 gaagccttgc aagcaacggc tacctatcaa aacttgacag ctgatcagca agctgaattg
     4501 gttggtgccc tccaaaattc atcgtcggca acagcgacag tagcccaaac gattctgggt
     4561 caattgtcgc aactcagtca agccttatca agcttacaaa gtctttctgg catggcaaca
     4621 caaatgagcc agctacaatc agctgtcggt cagatcaaca cggctgccaa tcaagcattg
     4681 ccaggcgcca caacagccat tgaaaaccta tcaagtggtt tgagtcaggt caataccgcc
     4741 ttgaaccaac aagttctacc aggaactcaa gccttgacga gtggtgtgag tcaacttcaa
     4801 acgcaattat caaatggagc aagtcagctc atgtcaggag taacagccta taccgcaggt
     4861 gttgcccaat tagcagaggg tggagcccag ttggttgcga ataatagtag tatccaatca
     4921 ggaggtggcc agttaacatc aggattggca accttggcct ccaactccaa tcagcttgtc
     4981 agtggttcag gacaactggc ttctggtagt cagcaattaa ttgcaggtgc agaacagttg
     5041 gctagtggcg gtcaaacctt gacaagtggt attactagcc tccgtacagg tagtgaaacc
     5101 ctaacaaatt cactcagttc tgccagtcaa caactatcag tcgtatctgt agaagacaaa
     5161 aatgcacaag cggtttctca accagtcacc ttggaacaca gtgaccaaga tgatgtgaag
     5221 accaacggag tcggcatggc tccttacatg gtgtctgttg ccctaatggt tgcagcctta
     5281 tcagcgaatg ttatttttgt caaacacatt gataatcgct cctacaagaa tcgttgggac
     5341 tgggccaaag gaaaactctt gctcaatggg atcattgcca gtctagcagc agtgattctg
     5401 tacggtgttc ttcgcttgat tggaatcgaa ccggctcatc caatggcaac cttgggatta
     5461 atcctcttag cctcttggac cttcatggcc ctcgttacag ccctggtggg ctggaacaat
     5521 cgtttcggat ccttcgcaag tttaattata ttgttactac agcttggctc aagcgcaggt
     5581 acctatccaa ttgaactcag cccacgcttc ttccgagtca ttcagcccta tcttccaatg
     5641 acctattctg tttcaggtct tcgtcaaacc atttctatgg ttggaaatag tagtcatcaa
     5701 gtttggatat tgagcctctt cttagtaggc tttatgggac taggtctctt gatttataat
     5761 caaaaagatg aataataata aaaccaactg ctccatgtga acagttggtt tttggttgat
     5821 gtagttattt tggggttggt gttcgtagat taatggttgc gttagttgac gtaatggtca
     5881 ggctattatt actctctttt ttctccaaag ttaaggtttg tttatcc
//
LOCUS       DASFRC010000132         5905 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.132, whole genome shotgun sequence.
ACCESSION   DASFRC010000132 DASFRC010000000
VERSION     DASFRC010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5905)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5905)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5905
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.132"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(74..544)
                     /locus_tag="U1087_001742"
     CDS             complement(74..544)
                     /locus_tag="U1087_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopY/TcrY family copper transport repressor"
                     /protein_id="HEM4756193.1"
                     /translation="MEQTISAAEWQVMRVLWAHPGATSQEIIQALQEGFDWQATTIKT
                     LLGRLRKKNYLRMVKETSKYHYYPLISEEEHLQGQVELLLATICSTKQGQLVENLLDT
                     GTFSQKSLEHLASKIAQLQKTAPEQIACRCLSGQCTCGHHHTLRKSTSDVVDLI"
     gene            complement(647..2158)
                     /locus_tag="U1087_001743"
     CDS             complement(647..2158)
                     /locus_tag="U1087_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000724057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein
                     AdcA"
                     /protein_id="HEM4756194.1"
                     /translation="MKKVGLLFLSVSALLLGACGNSTASEDGKLNIVTTFYPVYEFTK
                     QVAGDEANVDLLVKAGTEVHGYEPSAKDIARIQEADAFVYENENMETWVHDVEGSIDT
                     EKVNVISATEGMLLLPGGEEEHEGHDHSEEGHSHAYDPHVWLSPERAITLVENIRDSL
                     VAKYPEKKDAFETNAAAYIEKLDALDAKYSETLSAAKQKYFVTQHTAFAYLALDYGLK
                     QVSITGVAADEDPTPSRLAELTEYINKYGIKYIYFEENASKSVAETLAKETGVQLDVL
                     NPLESLTDEDMKNGKDYISVMEDNLTALEKTTSQEGSEILPEEGAETAQTVYNGYFED
                     SAVKDRTLSDYAGEWQSVYPYLLDGTLDQVWDYKAKIKGGMTAEEYKAYYDTGYKTDV
                     DQINITDNTMEFVVGDKKEKFTYKYVGYKILTYKKGNRGVRFLFEATDANAGNYKYVQ
                     FSDHNIAPVKTGHFHIYFGGESQEKLLEELENWPTYYPVGLTGLEIGQEMLAH"
     gene            complement(2168..2980)
                     /locus_tag="U1087_001744"
     CDS             complement(2168..2980)
                     /locus_tag="U1087_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEM4756195.1"
                     /translation="MFDLSVFHYDFMQRAFLAIIAMSLFSPILGVFLILRRQSLMSDT
                     LSHVSLAGVAFGLVLGISPTLSTVLVVIVAAVFLEYLRTIYKNFMEIGTAILMSTGLA
                     ISLIVMNKSGGKSGLSLEQYLFGSIVTISQEQVIALFTIAVIVIVLTLLFLRPMYILT
                     FDEDTAFVDGLPVRAMSIAFNVVTGVAIALMIPAAGALLVSTIMVLPASIALRLGKSF
                     KAVIFTGMGIGFFGMVMGLLTSYYAETPASASITLIFISIFLLVNVVQKFKK"
     gene            complement(2973..3677)
                     /locus_tag="U1087_001745"
     CDS             complement(2973..3677)
                     /locus_tag="U1087_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HEM4756196.1"
                     /translation="MRYITVEDLSFYYDKEPVLEHIHYYLDSGEFVTLTGENGAAKTT
                     LIKATLGILKPKQGKVSIAEKSIKGKKLRMAYLPQQIASFNAGFPSTVYEFVKSGRYP
                     RQGWFRRLTAHDEEHVRISLESVGMWEHRDKRLGALSGGQKQRAVIARMFASDPDIFI
                     LDEPTTGMDAGTKDAFYQLMHHSAKKHGKSVLMITHDPDELNKYADRNIHLVRDQQSP
                     WRCFNVHEADEEVAHV"
     gene            complement(3678..4121)
                     /locus_tag="U1087_001746"
     CDS             complement(3678..4121)
                     /locus_tag="U1087_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent MarR family transcriptional
                     regulator"
                     /protein_id="HEM4756197.1"
                     /translation="MNRIALEIEKYLHEIVLSSENQLEILVGSCQSTVKLTNTQEHIL
                     MLIEKAAYTNTEIAKELNVSQAAITKATKSLVAQGLLVAVRDDKDARIVRFSLTEAAK
                     PIAAEHAHHHAHTLEAYEELLEHYSLEEQESIARFLSELVEKIRK"
     gene            4318..4861
                     /locus_tag="U1087_001747"
                     /pseudo
     CDS             4318..4861
                     /locus_tag="U1087_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018377895.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
     gene            complement(4858..5640)
                     /locus_tag="U1087_001748"
     CDS             complement(4858..5640)
                     /locus_tag="U1087_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2971 domain-containing protein"
                     /protein_id="HEM4756198.1"
                     /translation="MKTLYHYTTVETLLLILNYKTLRFKSLLYVDDLLEPSTSDFGNL
                     GGFKYVSCWTDTPNSIPQWTIYSDNMTGVCIGISFDKETDVFLTEKFSLSEYSVPIDM
                     LNALHPLKLGLLVTNNKYVPSLEQIRYTDDVSLITPRVVSSDDKSITINLASSGIYKT
                     TDWSFQNEQRFSFQIFPLPIDLVLELMNANKGDLTEIINSFISVKPKEYFDLDLNLTI
                     FSNMTITFGKRCFAEDKLKVSKFLEDNKFHIPLFDSTVNIKS"
BASE COUNT         1961 a         1345 c          930 g         1669 t
ORIGIN      
        1 gagcagatag aaccctacta ctttcgcatt ttcaggtagt aggctgtaaa gctccacagg
       61 agctttacac tcatcaaatc aagtcaacaa cgtctgaggt tgattttcga agagtatgat
      121 gatgcccaca ggtacattgc cccgacaagc accgacaagc gatttgctca ggtgcagtct
      181 tttgtagttg ggctatttta ctagctagat gttcaaggct tttttgggaa aatgtccctg
      241 tgtctagcaa gttttcaacc agttgcccct gttttgtgga gcagatggta gctagtaaga
      301 gctccacctg cccctgcaaa tgctcctcct cactgatgag aggataatag tggtacttgc
      361 tggtttcctt gaccattctc aaatagtttt tcttccgcag acgacctaaa agggtcttaa
      421 tagtcgtcgc ctgccagtca aaaccttcct gcaaggcctg aataatttcc tgagaagttg
      481 caccaggatg ggcccacagg acccgcatga cctgccactc cgcagcagaa attgtctgct
      541 ccacacattc acctcccaac aataattttc taattttagt ttacatttgt agtcaaaaat
      601 tgtcaagaag aaagactgaa caccttgccc agtcttctca ttattcttag tgagccagca
      661 tctcctgacc aatttccaaa ccagtcaaac caacagggta gtatgtcggc cagttttcca
      721 actcttccaa gagtttttct tggctctctc caccaaaata gatatggaag tgacctgttt
      781 taacaggggc gatattgtgg tcgctaaatt gaacatactt atagttacca gcatttgcat
      841 ccgttgcttc aaacaagaaa cgaacaccac gatttccttt tttgtaggtc aaaatcttat
      901 agcccacata cttatacgtg aatttttctt tcttatctcc cactacaaat tccatggtat
      961 tatctgtaat gttaatttga tcaacatctg ttttgtagcc agtatcgtaa taagccttgt
     1021 actcttcagc tgtcatacca cctttgatct tagccttgta atcccagacc tgatctagtg
     1081 taccatcaag caagtatgga taaacagatt gccactcacc tgcataatct gaaagagtac
     1141 gatcttttac ggcactatct tcaaaataac cgttataaac agtttgcgca gtctcagcac
     1201 cttcttctgg caaaatttca gaaccttctt gggaagttgt tttttcaagg gcagtcagat
     1261 tatcttccat aacagaaata taatccttac catttttcat atcctcatcc gtcaaacttt
     1321 caagaggatt aagaacgtcc aactgaaccc cagtctcttt ggcaagtgtt tctgcaacag
     1381 attttgacgc attttcttca aaatagatat acttaatacc atatttatta atatactctg
     1441 tcaattctgc tagacgtgat ggagttggat cctcatccgc agcaacacct gtaatagaaa
     1501 cttgtttcaa accatagtcc aaagccaaat atgcaaatgc agtatgttgt gtaacaaagt
     1561 atttctgttt cgcagcagat aatgtttcag aatatttagc atccaaagca tctaatttct
     1621 caatataggc tgccgcattt gtttcaaaag catctttctt ttctgggtat ttagctacca
     1681 aactatcacg aatattttct acaagtgtga tggcacgctc aggagacaac catacatgcg
     1741 gatcataagc atggctatgc ccctcctcac tatggtcgtg accttcatgt tcctcctcac
     1801 caccaggcaa aagcaacatc ccctccgtcg cactgataac atttactttt tcagtatcaa
     1861 tcgaaccttc tacatcatgg acccatgttt ccatattttc attttcataa acaaaagcat
     1921 ctgcctcttg gatacgagca atatctttag ctgacggctc ataaccatga acctctgtcc
     1981 cagccttaac caacagatca acatttgcct catcacctgc cacctgcttg gtaaactcat
     2041 aaacaggata aaaggtcgtt acaatattca acttcccatc ttcagaagct gtgctattgc
     2101 cacaagcccc caaaagcaaa gctgagacag acaagaataa taaaccaact tttttcatct
     2161 taactcctta ttttttaaat ttttgaacaa cattcaccag taagaaaata ctaatgaaaa
     2221 tcaaggtaat acttgcactc gctggggttt ctgcatagta agaagtcagc aaccccatga
     2281 ccattccaaa aaagccaatg cccatcccag taaagataac agctttaaaa ctcttaccaa
     2341 gtcgcaatgc aatagaagca ggcaaaacca taattgttga aaccagcaaa gcacctgccg
     2401 caggaatcat taaggcaatg gcaacaccag tcaccacatt gaaggcaatg gacatagctc
     2461 gcacaggcaa cccatctaca aatgccgtat cctcgtcaaa ggtaagaata tacatcggac
     2521 gtaaaaacaa caatgtcagc acgatgacaa tcacagcaat cgtaaacaaa gcaattacct
     2581 gctcctgact aatggtcaca atcgaaccaa acagatattg ttccagacta agccctgatt
     2641 tcccgccaga tttattcatg acaatgagcg aaatagccaa accagtcgac atgaggatag
     2701 ccgtcccaat ttccataaaa ttcttgtaaa ttgtccgcaa atactctaaa aatacagctg
     2761 ccacaataac gacaagaaca gtcgaaagcg tcggtgaaat ccccaatacc aaaccaaatg
     2821 caacccccgc caacgaaaca tgactaagag tatccgacat caaactctgc cgtctaagta
     2881 tcaaaaagac ccccaaaatg ggcgagaaca gactcatcgc aatgattgcc aggaaagcac
     2941 gctgcataaa gtcataatga aatacagata gatcaaacat gggcaacctc ctcatccgct
     3001 tcatgaacat tgaaacaacg ccaaggagac tgctgatcac gaaccaagtg aatgtttcga
     3061 tcagcatact tattcagctc atcaggatca tgagttatca tcaaaaccga ctttccatgc
     3121 ttcttagccg aatgatgcat gagctggtaa aaagcatcct tggtccctgc atccatccct
     3181 gttgtcggtt catccagaat aaaaatatct ggatcagagg caaacatacg cgcaatgacc
     3241 gcacgctgct tctgcccacc actcaaagca cctaagcgct tatcccgatg ttcccacatt
     3301 ccaactgatt ccaaactaat ccgaacatgt tcctcatcat gggctgtcaa acgacgaaac
     3361 caaccttgtc gaggataacg cccggatttt acaaattcgt aaaccgtgct cggaaaacca
     3421 gcattaaaac ttgcaatttg ctgaggtaaa taggccattc tcaacttctt accctttata
     3481 ctcttctcag caatagaaac cttcccttgt ttgggcttca atatccccaa agtcgcctta
     3541 atgagggttg tcttggctgc gccattctca ccagtcaaag tcacaaattc cccactatca
     3601 agataataat gaatatgttc taaaaccggt tctttgtcgt agtaaaacga caagtcttcc
     3661 acagtaatat atctcatcta ttttctaatc ttctccacta actcacttaa gaatcgagca
     3721 attgactcct gctcttcaag actataatgt tccaaaagct cttcataagc ttccaaggta
     3781 tgcgcgtgat gatgagcatg ctctgcagca ataggcttag cagcctcagt caaactaaag
     3841 cgaacaatac gagcatcctt atcatctcta accgccacca ataacccctg agcaactaat
     3901 gactttgtag ccttcgtgat cgcagcctga ctaacattca actccttagc aatctcagta
     3961 ttagtatatg cagccttttc aataagcatc aaaatatgct cctgcgtatt cgtcaacttc
     4021 accgtgcttt gacaagaacc aaccaaaatc tccaattgat tctccgaact caaaacaatc
     4081 tcgtgcaagt acttctcaat ttctaatgca atacgattca taggcatccc cttaaccttt
     4141 taattaactt gttaagtata ccacatagaa aacaaaaaaa caaggaaaat atttgaaagc
     4201 taaattccca aagtaagttc tagtctgact cgaaaactag aaactagact gagatgaaaa
     4261 aataaggtag aacttgagaa caataaatta aagagtttag ttgaaaatgg taaataaaaa
     4321 ttactcttta cagtcctatt ttttataggt ctaagactta gagaagcact cgcactaaca
     4381 cggcaagata tcgacctttc gagcaataca attcatatca caaagtctgt atacgttaat
     4441 aaaggtataa gccatatcag tgcaacttaa actaaagcag gaactagaag aaatatcatc
     4501 aataaaaaat taagtcaaga actgcaatat tggtaacagc aacaaaaaca tctattagag
     4561 caatttacaa gtgatagcat gagcctacaa gtgtttcaaa gtagtcccat tacgattaca
     4621 aaaaattcaa tagaaagcag tacaaaacaa attcttgaac gtgatgcggc tcttaaaaag
     4681 atacgcatac acgattttaa gcactcacac gcttctctat tgataaatcg aggggaaaga
     4741 ttatttagtt gtgaaagaaa ggctaggaca cgcttctata acaactacaa tcgataccta
     4801 ttctcactgg tatccaagca agcaaaaaga tttagctgat aaattagatg acctaattta
     4861 agactttata tttacagtac tatcaaataa aggaatatgg aatttattat cctctaaaaa
     4921 ttttgatact ttcaacttat cttcagcaaa gcatctttta ccaaacgtaa ttgtcatatt
     4981 actgaatata gtcagattta aatctaaatc aaagtattct ttaggtttaa cagaaataaa
     5041 actattaatt atttcagtca aatctccttt atttgcattc attaattcca aaactaaatc
     5101 tattggtaat ggaaaaattt gaaaagaaaa tctttgctca ttttgaaaac tccaatcagt
     5161 tgtcttatag ataccacttg aagctaaatt aatagttatg gatttatcat ctgaagaaac
     5221 tactcgagga gtgatcaatg aaacatcatc cgtatacctt atttgttcca aagaaggcac
     5281 atatttatta tttgtaacta ataagcctaa ttttaaagga tgtaatgcgt ttaacatatc
     5341 aattggtaca gaatattcag ataaagaaaa tttttccgtt aaaaagacat cagtttcttt
     5401 gtcaaaacta attcctatac acactcctgt catattatca gaatagattg tccattgtgg
     5461 aatactatta ggagtatcag tccaacaaga cacatacttg aatccaccta gattaccaaa
     5521 gtctgaagtt gaaggttcta atagatcatc aacataaagt aaacttttga atctcaatgt
     5581 tttataattt aatatcagaa gcaatgtttc aactgttgta taatgataaa gtgtcttcat
     5641 ataatggctc ctcctcttgc ttatataaca tactatacaa caaaacatta agtaattttt
     5701 agtaactcaa ctgaaaattt tataccctca aaacaaaaag acaaggctta gaaaccttgt
     5761 cttttaaact ataccggcgg ccggggtcga accggcacgt ccttgcggac actggatttt
     5821 gagtttgaaa ccaaggaact tataactgct caaagcctat taaatcgcct ttttacaatg
     5881 ttcattctgt cgcaaaagta acaga
//
LOCUS       DASFRC010000133         5901 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.133, whole genome shotgun sequence.
ACCESSION   DASFRC010000133 DASFRC010000000
VERSION     DASFRC010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5901)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5901)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5901
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.133"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..453
                     /locus_tag="U1087_001749"
     CDS             <1..453
                     /locus_tag="U1087_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756199.1"
                     /translation="FKKVDWKLVSDRYIELKQIVIDEKIKTVNHDQIKQYYLENNLNF
                     ARQDLINGKISTWNDGLIISTESVEINEETVRLVTERFPDLELQLENIEVGQQFSWKQ
                     NGIYYTFSCLSREDKGIIPLSEITDAVAMQCAEELVDNWLNKETDSLK"
     gene            675..1433
                     /locus_tag="U1087_001750"
     CDS             675..1433
                     /locus_tag="U1087_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM4756200.1"
                     /translation="MKSNKEQKYFWLTFSLIVALMIWWFLSNYDRTSRSFPNIILVWN
                     ALLIMIDKGFIFEDIFSSLTSVFFGFTSGFLLSVPNALFMSWYSPYRNIVYPWIQYIR
                     NIPPLAYVPLVVISAGVGLLPQVIVIAIATFLTMTVTIYQGIINIDPNLIKAARILGA
                     SDFEIFKRILVPASIPFIMTAVRLGTSISLTTIIAAESTGATSGMGMRIRSLNNSFDS
                     SGMLLYIILIGVIGLLLNKLVDLIERKLTGWQQK"
     gene            1418..2209
                     /locus_tag="U1087_001751"
     CDS             1418..2209
                     /locus_tag="U1087_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4756201.1"
                     /translation="MATEVKKIKVKIEEVSKSFQSIHGEVVALNQINLEIFENEIVTV
                     VGPSGCGKSTLLNLVAGLEPVTSGKIYCDDNEIVGVGVERGVVFQQYALFPWMSVQQN
                     VMFGPEMQGKSKLEASEIANKYIKMVGLQEFSNHYPKELSGGMKQRVAIARAYAVNPT
                     ILLMDEPFGALDAQTRIQLQDELIEMLEHERKTCLFITHDIEEAILLGNRVIIMSSRP
                     GEIKEIVNVDLPFPRSQSIKFENDFIDIKNHIWSLVYKDFLNIKK"
     gene            2240..3268
                     /locus_tag="U1087_001752"
     CDS             2240..3268
                     /locus_tag="U1087_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM4756202.1"
                     /translation="MIKFVKNKYFNWIISLITLIILVACSSNQTLIRDNSANIDKIRI
                     AYMPNFASLHDIITGINSGIFKEEGLEVELIEFADGPTIIASLESGSIDIGNIGPGAH
                     KLAIEGRAEVVAFSQLGNADELIARSDRGIDSIKDLRGKKIGTASGTSAETILKLALL
                     DANLSEKDVEIIDMDASAIVTAMLSGSIDVAATWSPNTTLIKRELKEKVVVLADNSRY
                     RDQSPAIASYVTFPGYSEKNNEKISKFLKGLYRAMDYRAEHMKEVSKWVATQIGSDIT
                     AVQDQLQDGEWLTSRQMIQLINTGILQQYYEKQQKNLIVSGIVDISRNINEYVLIDQM
                     SSILKEIK"
     gene            3362..4171
                     /locus_tag="U1087_001753"
     CDS             3362..4171
                     /locus_tag="U1087_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate isomerase"
                     /protein_id="HEM4756203.1"
                     /translation="MIEYYNFNKSELEKHSRIPLIVKKNNEEIFISLALEMVELIKEN
                     NEKNEKTVIICPVGPVGQYPHFVRLVNQFKIDLSNVWFINMDEYLLEDLHWIDVVHPL
                     SFRGFMQKNVYSQIHPTLIMSEEQRIFPDPLDIDSISNKIKELGKIDLCIGGIGLNGH
                     IAFNEPDSTLTVQEFLKLGSRVLPISVETKVMNGLTVLKGAVEEVPNYCVTIGMSEIF
                     QAKKIRLAVFRDWHHAVIRKTVCSKPDTGFPSTLMQIHTNCSIYLNESLAN"
     gene            4332..4511
                     /locus_tag="U1087_001754"
     CDS             4332..4511
                     /locus_tag="U1087_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014635836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HEM4756204.1"
                     /translation="MKQASYPIQGVTCASCAMTVEKALNKLDGIQNASVNLATEKTNI
                     QYDPAHLSLSDIDSC"
     gene            4660..5407
                     /locus_tag="U1087_001755"
                     /pseudo
     CDS             4660..5407
                     /locus_tag="U1087_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636211.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
     gene            5464..>5901
                     /locus_tag="U1087_001756"
     CDS             5464..>5901
                     /locus_tag="U1087_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM4756205.1"
                     /translation="MFSLSITISVLVIACPCALGLATPTAIMVGTGKGAENGLLFKSG
                     QTIKTLQGVNTIVFDKTGTITEGKPQVTDIHLLSTKNREQVLQLAASSEQYSEHPLAQ
                     ALLRSAEEESIPLLASQDFQALSGRGLSVTIAEQTIYLGNERLM"
BASE COUNT         1955 a          924 c         1167 g         1855 t
ORIGIN      
        1 tttaaaaaag tagattggaa gttagtatca gatcgatata ttgaattgaa acaaatagtt
       61 attgatgaaa aaataaaaac cgtaaatcat gatcagatta aacaatacta tttagaaaat
      121 aatctaaatt ttgctcgtca agacctaata aatggaaaaa tctctacttg gaatgatgga
      181 ttaattattt ctacagaatc tgttgaaata aatgaagaaa ctgttagatt ggtcactgag
      241 agatttcctg atttagaatt gcaattagag aatatcgagg tgggccaaca gttttcatgg
      301 aagcaaaatg gtatttatta tactttctct tgtctttcta gggaagataa gggaattatt
      361 ccactttctg aaattactga tgcagttgct atgcaatgtg ccgaggaact tgttgataat
      421 tggttaaata aagaaactga ctctttaaaa tagtccataa ttattgacaa tctaaagtta
      481 acaaaaattt tatgttaatt tcaaaggaat tgggaatatt cgtactgaaa aactgatttc
      541 aattataatg taagtgtctt agttaaaacg gtaatttttg tagctatact aattaatagt
      601 ttgcaaaata ggattatttt aatttattag ggctaaacat tttttaaagt atttgtaact
      661 atgggaggat aaagatgaag agcaacaaag aacaaaaata tttttggttg acattctcat
      721 tgattgttgc attgatgatt tggtggtttt tatcgaatta tgatcgaacc tctcgtagtt
      781 ttccaaatat cattttggtt tggaatgctt tattaatcat gatagacaaa gggtttatct
      841 ttgaagatat attttcaagt ctaacttcag ttttcttcgg gttcacgtcg ggctttctat
      901 tgtcggtgcc taatgcattg tttatgtcct ggtattctcc atatcgtaac attgtatatc
      961 cttggataca atatatcaga aatatcccac cacttgcgta tgttccttta gtagtaattt
     1021 cggctggggt cgggctgtta cctcaagtta ttgtaatagc gatagctact tttctgacta
     1081 tgactgtaac aatttatcaa ggcattatta atattgatcc aaatttaatt aaagcagcaa
     1141 gaattttagg tgcatcagat tttgaaatat ttaaaagaat tttggttcca gcatccattc
     1201 catttattat gacagctgtc agattaggta catcgatttc tttaactaca atcattgcag
     1261 ctgaatctac tggtgctaca tcaggtatgg gaatgagaat acggtcttta aataactctt
     1321 ttgattcctc aggaatgctt ttgtatatca tattgattgg agtaattggt ttactgttaa
     1381 ataagttagt tgatttgata gaaaggaagt taactggatg gcaacagaag taaaaaaaat
     1441 taaggtcaaa attgaagaag tttcaaaatc atttcagtca attcatggtg aggttgttgc
     1501 actaaatcaa ataaatttag aaatctttga gaatgaaatt gttacagttg ttggtccatc
     1561 aggttgtggt aaatctactc tactaaactt ggttgcaggt ttggaacctg taacttccgg
     1621 gaaaatttat tgtgatgata atgaaattgt tggcgttgga gttgagcgtg gtgttgtttt
     1681 tcaacaatat gcactatttc cttggatgag tgtacaacag aatgtaatgt tcggacctga
     1741 aatgcaagga aaatcaaagt tagaagctag cgaaatagct aacaagtata ttaaaatggt
     1801 tggattacaa gaattttcca atcattatcc gaaagaatta tcgggaggaa tgaagcaaag
     1861 agttgcaata gcaagagcgt atgctgttaa tccgacgatt ctattaatgg atgaaccatt
     1921 tggagcctta gatgcccaaa cgaggattca actgcaagat gaattgattg aaatgctgga
     1981 acatgaacga aaaacatgtt tgtttatcac acatgatatt gaggaagcaa tacttctagg
     2041 aaatcgagta attattatga gttcaaggcc gggagaaatt aaagaaattg tgaatgttga
     2101 tttaccgttt ccaagaagtc aatccataaa atttgaaaat gattttatag atattaagaa
     2161 ccacatttgg tcacttgtat ataaggattt tcttaatatt aaaaagtgac acacttatac
     2221 tcttttttga gagggaaaaa tgattaaatt tgttaagaat aagtatttca attggattat
     2281 tagtctaatc actttaatta ttttggttgc atgtagttct aatcaaactt taataagaga
     2341 caattcagcc aatatagata aaataagaat tgcatatatg ccaaattttg caagtcttca
     2401 tgacattatt actggaataa attcaggtat ctttaaagag gaggggcttg aagtcgaatt
     2461 gattgaattt gctgatggtc caactatcat tgcatcttta gagtcaggtt caattgatat
     2521 tggtaatatt ggtccgggtg cccataaatt ggcgattgaa ggtagagcag aagttgttgc
     2581 atttagtcaa cttgggaatg ctgacgaatt gattgctcgg tcggatagag gaattgattc
     2641 aataaaggat ttgaggggaa agaaaattgg aacagcatct gggacatcag cagaaacaat
     2701 tctaaagctt gctttgttag atgcaaattt gtctgaaaaa gatgtagaaa ttattgatat
     2761 ggatgcctcc gctattgtta cagcgatgtt gtcgggatca atagatgtag ctgcaacttg
     2821 gtcacctaat acaactttaa taaagcgaga attaaaggaa aaagttgttg tattagctga
     2881 taattcacgt tatagagacc aatctccagc tattgcttca tatgtaactt ttccggggta
     2941 ttctgaaaaa aacaatgaaa aaatttccaa gtttttaaaa gggttatatc gtgcaatgga
     3001 ttatcgagct gaacatatga aggaagtttc aaaatgggtt gctacccaaa tcggttcaga
     3061 tatcacagct gttcaagatc aactacaaga tggagagtgg ttaacaagta gacaaatgat
     3121 tcaattgatt aacactggga tacttcaaca gtattacgag aaacaacaaa aaaatttaat
     3181 agtatctgga atagtagata tctctaggaa cattaatgaa tatgttctaa ttgatcaaat
     3241 gagtagtatt ttaaaggaga ttaaataatt cttgtgaaat ataattagcc attttattat
     3301 caataaaagt aacgttgatt cgataatcat tcatagtttt caagaaaaca tgaggtaatg
     3361 catgatagaa tattacaatt ttaataaaag tgaattagaa aagcatagta gaattccatt
     3421 gattgtaaaa aagaataatg aggaaatttt tatttcactt gctctagaaa tggtagaatt
     3481 aataaaggaa aataacgaaa aaaatgagaa aactgtcata atttgtcctg ttggaccagt
     3541 tggtcagtat ccgcattttg ttagattagt gaatcaattt aagattgatt tgtctaatgt
     3601 ttggtttatt aacatggatg aatatttgtt ggaagatttg cattggatag acgtagtaca
     3661 ccctcttagt tttcgaggat ttatgcagaa aaatgtctac agtcaaatac atccaactct
     3721 tattatgtca gaagaacaaa gaatttttcc agatcctctt gatatagact cgatttcaaa
     3781 taaaatcaaa gaattaggta aaatcgactt atgtattggt ggaattggcc taaatgggca
     3841 cattgcattc aatgaaccgg attcaacatt aacagttcaa gaatttttaa aattagggtc
     3901 gcgagtgtta cctatttctg tcgagacaaa ggttatgaat ggtttgacgg tattaaaagg
     3961 agctgtagaa gaagtgccta attattgtgt aacaatagga atgagcgaga tttttcaagc
     4021 gaaaaaaatt cgacttgcag tttttcgtga ttggcatcat gcggtcatac gtaaaacagt
     4081 ttgttctaag ccagatactg gatttccatc aactctaatg caaatccata caaattgttc
     4141 tatctatcta aatgaatcgt tagcaaatta acctatgttc aaacacatac agaatatata
     4201 taagtttatt acccttttga tcagatacct aatgagagaa gattctctca tttttttaat
     4261 caaaattgtt tacaaatgta gtcggatgtt gtataatttg tttacaaatg tagtcagaaa
     4321 aggagtaatc tatgaaacaa gcaagctatc ccattcaagg cgtgacctgc gcttcctgtg
     4381 ctatgacagt cgagaaagcc ttgaataagc tagatggaat acaaaacgcc agtgtgaatc
     4441 tagcaacgga aaaaacaaac attcagtatg atccagccca tctgagctta tcagatatcg
     4501 acagctgttg aaaaagcagg ttataaagcg gtactgccaa aaacacaaga gtcagaagct
     4561 caaccaagcg gaaaagaaca acacaaaaat gatttatggc acagatttat ctggtcaacc
     4621 attttcacgc ttccactact ctacattgca atgggaccta tgttaccagg tgggggattg
     4681 ccattgccag ctatcttaca ccagccgcta gtttttgccc tagttcagct cattcttgta
     4741 ttaccagtcc tatatgttgg tcgtgcattt tatcaaaaag ggtttaaaac cctgtttgcc
     4801 ggtcatccca atatggatag tttgattgcc gttgggacaa gtgctgcctt gtttcaaggg
     4861 atcattatga ctgacgattt tgattgctac caaccaagta gccacccaac atggacatcc
     4921 tgagctctat tttgaatcgg cagctgttat tttaaccctt atcactcttg gaaaatacat
     4981 ggaggcatta tcaaaagagc gtacttcaga agctatcagt aaactgatga atctcgcccc
     5041 taaaactgca cgcgttctct gtgaaggtca agaagtgacc ctccccttag accaagtcaa
     5101 agtaggagat gtccttcaag tccgccctgg tgaacagatt ccagttgatg ggataatagt
     5161 agaaggccaa tcgacaattg atgaatccat gctgacaggg gaaagtttgc ctgttaaaaa
     5221 aatatcgggg atacagtcgt tggtgcgact ctcaatcaac atggtgcttt ccaaatggaa
     5281 gcgacaaaag ttggagcaga taccacattg tcccaaatta ttcgtttggt ggaagaagca
     5341 caggggtcaa aagctccgat tgcgcagttg gctgaccgcg tttcagcagt ctttgttcca
     5401 attgtaatgg gattagccgt cctttctggc cttgcttggt acttcttggg acaagagccc
     5461 tagatgttct cactttccat taccatctcc gtccttgtca ttgcctgccc gtgtgccttg
     5521 ggccttgcca caccaaccgc tatcatggtt gggactggaa aaggggcaga aaatggtctt
     5581 ttgttcaagt ctggtcaaac tattaaaacc ctacaaggtg tgaacaccat tgtcttcgac
     5641 aagactggga ccattactga gggcaagcca caagtgacag acatccacct tttgtctact
     5701 aaaaatcgtg agcaagttct ccaactggca gcaagcagtg aacaatactc cgagcatcca
     5761 ttggctcaag ccctcttacg ttcagcagaa gaggaatcaa ttcccttact tgccagccaa
     5821 gattttcagg cactttctgg tcgtggtctt tcggtaacaa tagcagagca gaccatctat
     5881 ctgggaaatg aacggttgat g
//
LOCUS       DASFRC010000134         5895 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.134, whole genome shotgun sequence.
ACCESSION   DASFRC010000134 DASFRC010000000
VERSION     DASFRC010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5895)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5895)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5895
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.134"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            323..1438
                     /locus_tag="U1087_001757"
     CDS             323..1438
                     /locus_tag="U1087_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low temperature requirement protein A"
                     /protein_id="HEM4756206.1"
                     /translation="MSEIIAKRVSNYELFYDLVFVLATSSLTGLLHGDHIGLREILTF
                     ITANLIIMTLWINETIYLNKYGERDLLDIFTIIASMFVVGQLSLNFSHDFKATALPFT
                     IFLTLSYLLLCLQYYLRGRKIGFTADIKNSLYMFGIYLLVFFLALVAIYFNFWTYDEK
                     SLLLFYLPFFISYFFKDKLSHDVMNFPHIVERCQLITIITFGETVIAILKNYPILELP
                     LEGILLFFAMATLFIFYISQTYLTIDHHRKADATVLLYAHLVIVLGLNFFTVAMELFP
                     SHHNDLALPMLIVGNLLFYSGILSTSFYNQQVHQVGRRGLFIYALILLIGNVALLLDG
                     HSNILLFVILNLLSHAMVAYHVIRFRKANHSLLGEDI"
     gene            complement(1528..2793)
                     /gene="dltD"
                     /locus_tag="U1087_001758"
     CDS             complement(1528..2793)
                     /gene="dltD"
                     /locus_tag="U1087_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-lipoteichoic acid biosynthesis protein
                     DltD"
                     /protein_id="HEM4756207.1"
                     /translation="MRKQLWQIFGPVICATFLVILTLLFFPSSSRSNFKEEKQDAVAL
                     SYISFKSKYKKNRALGDKNHRFVPFFGSSEWSRFDSMHPSVLADAYQREYTPYLLGQR
                     GAASLTQYFGMQQIGAHLKNSQAIYVVSPQWFSPKGASSKAFEQYFSSDQATHFLQTS
                     AEDDYDRYAAKRFLELKSDCSLTGMFQKVASGKELSKWDREQLTWQAYLLEKQDALFS
                     RFADSGSNLGLVETEAMKLPEPFSYDRLSKVANEDGSRSTQSNDFQIDDRFYRNRLQS
                     KIKKLKQSQTKISYLQSPEYNDFQLVLNEFAKHQTDVLFVIPPVNERWMNYTGLNKDM
                     YRATVAKIKYQLTSQGFNHIADLSEQGGIDYFMQDTIHIGWQGWLELDKYIHPFLTEQ
                     QAPVHYQLKKEFLTSEWAAYKGDLNLFLK"
     gene            complement(2786..3025)
                     /gene="dltC"
                     /locus_tag="U1087_001759"
     CDS             complement(2786..3025)
                     /gene="dltC"
                     /locus_tag="U1087_001759"
                     /EC_number="6.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005591431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--poly(phosphoribitol) ligase subunit
                     DltC"
                     /protein_id="HEM4756208.1"
                     /translation="MDVKETILNIIEELFMEDVSEMMDEDLFDAGVLDSMGTVELIVE
                     LESRFNITVPVSEFGREDWNTANKIISGVVELMHA"
     gene            complement(3068..4309)
                     /gene="dltB"
                     /locus_tag="U1087_001760"
     CDS             complement(3068..4309)
                     /gene="dltB"
                     /locus_tag="U1087_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009659556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-lipoteichoic acid biosynthesis protein
                     DltB"
                     /protein_id="HEM4756209.1"
                     /translation="MMEFFKQLPQLEPYGNPLYFFYLVLALVPIFIGLFFKKRFPLYE
                     TGVSLAFIVLMFTGTKTIQLLSLLAYIIWQTMLIFFYKHYRQRANQSWVFYLIVCLAV
                     FPLTWVKLAPTFSQHGAIFGFLGISYLTFRSVGMMIEMRDGLLTEFSLGSFLRFLLFM
                     PTISSGPIDRYRRFTEDYKQIPERTELLNMLDQTVHYIMMGFLYKFILAYFIGHTLLE
                     PLKAVALDQGGWFNLPTIGVMYLYGFELFFDFAGYSMFAIGISNLMGIRCPINFDQPF
                     KSRDLKEFWNRWHISLSFWFRDFVFMRLVKTLLKHKVFKNRNTVSNVAYLLNMLLMGL
                     WHGVTWYYIAYGLFHALGLIINDAWIRKRKSINLARKKAGQEPLLDNRWTSFAGMFVT
                     FHTVMFSFLIFSGFLDKLWFK"
     gene            complement(4306..5868)
                     /gene="dltA"
                     /locus_tag="U1087_001761"
     CDS             complement(4306..5868)
                     /gene="dltA"
                     /locus_tag="U1087_001761"
                     /EC_number="6.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--poly(phosphoribitol) ligase subunit
                     DltA"
                     /protein_id="HEM4756210.1"
                     /translation="MSFKEESIKKISSMLERVEHFATENPDYPVYHYLGQLYSYGDLK
                     ADSDSLAAHIDSLDLPANSPVLVFGGQEYQMLAIFVALTKAGHPYIPVDSHSALDRIE
                     AILEIAEPSLVFAVADFPLETSLPVLGLSEVEAIFEKKSTYQLMHPVSGDDTYYIIFT
                     SGTTGKPKGVQISHDNLLSFTNWMIRDKEFALPERPQMLAQPSYSFDLSVMYWAPTLA
                     LGGTLFALPKELTLDFKTLFAAIQTLPFKIWTSTPSFVDMALLSREFDGKHLPNLTHF
                     YFDGEELTVKTVQKLRERFPKAVIVNAYGPTEATVALSAVAITNEMLVNYKRLPIGYT
                     KPDSPTFILDEDGQVVPNGQQGEIVVSGPAVSKGYLNNPERTEAAFFQFDGLQAYHTG
                     DLGVMTDEGLLLYGGRMDFQIKYNGYRIELEEVAQHLNKSTYIEAAVAVPRYNADHKV
                     QNLLAYVVPKAGIMEQFDRELELTKVIKQELKERMMDYMMPSKFIYRDSLPLTANGKI
                     DIKGLIAEVNAQ"
BASE COUNT         1849 a         1295 c          982 g         1769 t
ORIGIN      
        1 ttgtcgcatt tatccgctaa tcggattggc cattccgaaa tcacgattgc taatatagat
       61 actaacaagg tagcaggata agttcaaagt gtatacgcat aaagtctcac ctcccaacct
      121 gcactgttta atgattgtga cttagataat ctgtcataaa acgcacaaac catacaatta
      181 taaaaaattt attcccgcca aagaatcaag aattgaaaga ctcacacaaa cgtttccacg
      241 attattatcc caaaatgact agtttgctct ctcgcctttt cgtatggtat aataggtcag
      301 attttttgaa aaggagattg acatgtctga aattatcgca aaacgcgtat caaactatga
      361 attgttttat gacttggtct ttgtattagc tacttcttca ctgactggcc tcttacacgg
      421 ggaccatatc ggactcaggg aaattctaac ttttatcact gcaaacttga ttatcatgac
      481 cttgtggatt aatgagacga tttacctcaa caaatatggt gagcgagatt tgctggatat
      541 tttcactatc atcgcttcta tgtttgtggt ggggcaatta tccctaaact ttagtcatga
      601 ttttaaagcg acagccctac cctttactat ctttttgacc ctgtcttatt tgctactttg
      661 cttgcagtac taccttcggg ggcgaaaaat cggttttacg gcagatataa aaaatagtct
      721 ctatatgttt gggatttatt tgctggtatt tttcttggct ttggtagcta tttacttcaa
      781 tttctggacc tatgatgaaa agagcctctt gcttttttat cttccatttt tcatttccta
      841 tttcttcaag gataagctca gtcacgatgt catgaacttt cctcacattg ttgaacggtg
      901 tcagttgatt actattatta cttttggtga aacggtcatt gcgattttga aaaattatcc
      961 gattctagaa cttcctttgg aaggaatcct cctcttcttc gcaatggcga ctctgttcat
     1021 cttctatatt tctcagacct atctcactat cgaccatcac cgcaaggcag atgcgactgt
     1081 tctgctatac gctcatttgg tgattgttct tggcttgaat ttcttcacag tggcaatgga
     1141 acttttccct agtcatcata atgatttggc cttgcccatg ctgattgtag gaaaccttct
     1201 cttctatagt ggtatccttt cgacctcctt ctataatcaa caagtccatc aagttggcag
     1261 gagagggctg ttcatctatg ctctcatttt actaattgga aatgttgcct tattgctgga
     1321 tgggcattca aatatcctac tatttgttat cttaaacctg ctctcacacg ctatggttgc
     1381 ctatcatgtt attcgcttcc gcaaagccaa ccacagtttg ttgggagaag atatataatc
     1441 attcagttta ttacagtaaa agaacaaaaa aagcaaggag acttcctaat tcaaagcctt
     1501 cttgcttttt attataactg tatctaacta ttttaaaaat aagtttaaat ctcccttata
     1561 tgcagcccat tcagaagtta aaaattcttt ttttaactga taatgaacag gtgcttgttg
     1621 ttctgtcaag aatgggtgga tatacttatc aagctccagc cagccttgcc aaccgatgtg
     1681 gattgtatct tgcataaaat aatctatccc cccctgctcc gacaaatcag caatatgatt
     1741 gaaaccttga ctggtcaact ggtacttaat ctttgctact gttgcccgat acatatcttt
     1801 attgagacca gtgtagttca tccaacgttc attaactggg ggaattacaa atagcacatc
     1861 agtctgatgt ttagcaaatt cattcaaaac cagctgaaaa tcattgtact ccggtgattg
     1921 cagataagat atttttgtct gggattgttt gagttttttg atttttgact gaagacgatt
     1981 tctataaaac ctatcatcaa tttggaaatc atttgattga gtagaacgac tcccgtcctc
     2041 attagccact ttactcaagc ggtcatagga aaaaggctct ggaagtttca tcgcttccgt
     2101 ttctaccaat cctaaattac taccagaatc agcaaagcga ctaaataagg catcttgctt
     2161 ttctaataaa taggcttgcc aggtcaactg ctctctatcc catttcgaca attccttacc
     2221 actagctact ttttgaaaca ttcctgtcaa actacagtct gatttaagct ctaagaaacg
     2281 ctttgctgca tatctatcat agtcatcctc agcacttgtt tgcagaaaat gagtggcttg
     2341 atcactacta aaatattgtt caaatgcctt agatgatgcc cctttgggtg aaaaccattg
     2401 aggagaaaca acatagatag cctgactatt ttttaaatgt gccccaatct gttgcatgcc
     2461 aaaatattgt gtcagcgaag ctgcaccacg ttgtcctaac aaatagggag tatactctct
     2521 ctgataggca tctgccaaca ctgacggatg catactatca aaacgtgacc attcacttga
     2581 cccaaagaaa ggaacaaagc gatgattttt gtctcccaga gctctatttt tcttatattt
     2641 gctcttaaaa ctaatataag acaatgctac tgcatcttgt ttttcttctt tgaaatttga
     2701 ccgagaagaa ctcgggaaaa acaacaaggt gagaataact aaaaacgttg cacaaatcac
     2761 aggcccaaaa atctgccaca attgcttacg catgcatcaa ctccacaaca ccagaaatga
     2821 ttttgttagc tgtattccaa tcttcacgac caaactctga aactggaact gtaatattaa
     2881 aacgactttc taactccaca ataagttcta cggtccccat actatccaaa acacccgcat
     2941 caaataggtc ttcatccatc atttcagata catcttccat aaataattct tcgataatat
     3001 tcaatattgt ttcttttaca tccatttttt attcctttct acgattcata caatcgttac
     3061 ctattgtcta cttgaaccac aatttatcta aaaatcctga aaatatcaag aaagagaaca
     3121 tgaccgtatg gaaggtcaca aacataccag cgaaactcgt ccaacgatta tccagcagtg
     3181 gttcttgccc agcttttttt cgagctaaat taattgattt cctcttacga atccaagcgt
     3241 cattgatgat caaccccaaa gcatgaaaga gaccatatgc aatataatac catgttacac
     3301 catgccacaa gcccatcaag agcatattta gcagataggc aacattagat accgtatttc
     3361 gatttttgaa aaccttatgt ttcaacaaag tcttaacaag acgcatgaag acgaaatcac
     3421 ggaaccaaaa agataagctg atatgccatc gattccaaaa ttccttaaga tcacgcgatt
     3481 tgaacggttg atcaaagtta attgggcaac gaatacccat aagattggaa atacctatgg
     3541 caaacatgga atagcctgca aagtcaaaga ataattcaaa accatagaga tacataactc
     3601 caatagtagg taagttaaac catccacctt gatccaaggc gactgccttt aaaggctcca
     3661 gtaaagtatg cccgataaaa taggctagaa taaacttata taagaagccc atcataatat
     3721 aatgcacagt ctgatcgagc atatttaata actcagttcg ctcaggaatt tgtttgtaat
     3781 cttccgtaaa ccgtctataa cgatcaatag gaccactcga aatagttggc ataaatagca
     3841 aaaatcgtaa aaaactccct aaactaaatt ccgttagtaa accgtcccgc atttcaatca
     3901 tcattccgac cgaccgaaac gttaaataag aaatacctaa aaaaccgaaa attgccccat
     3961 gctgactaaa agtcggtgcc aactttaccc aagtcaacgg aaaaacagct aaacatacga
     4021 ttaaatagaa gacccagctt tgatttgccc gttgacgata atgcttgtag aaaaaaatca
     4081 acattgtctg ccaaatgata taggccaata aagacagcaa ctgtattgtc tttgtacctg
     4141 taaacatcaa gacaatgaag gctaaactaa cacctgtttc atacaagggg aaacgttttt
     4201 taaaaaagag tcctataaaa attggtacta gcgccaagac tagatagaaa aagtacaatg
     4261 gatttccata aggctctaac tgaggtagct gtttgaaaaa ctccatcatt gagcattcac
     4321 ctcagcgatc aatcccttaa tatcaatctt cccatttgca gtcaaaggaa gactgtctcg
     4381 ataaataaac ttcgaaggca tcatataatc catcatccgt tcttttaact cctgcttgat
     4441 gaccttggtt aactccaact ctcgatcgaa ctgctccata atccctgctt tagggacaac
     4501 ataagctaac agattttgca ctttatggtc agcattataa cgtggaacag ctaccgcagc
     4561 ctcaatatag gttgatttat ttaagtgttg ggcaacttct tccaactcga tacgataacc
     4621 attatattta atttggaaat ccatacgccc accatagagt aacagacctt catctgtcat
     4681 tacacccaaa tccccagtat gataggcctg taagccgtca aactggaaaa atgccgcctc
     4741 ggttctctca ggattattca aatatccttt agagacagca ggacctgata caacaatttc
     4801 tccctgttga ccattcggta ctacttgacc atcctcatcc aaaataaaag ttggtgagtc
     4861 tggtttggta taaccaatcg gcaaacgttt ataattcact aacatctcat tagttatagc
     4921 aactgctgat aaggcgactg tagcttcggt cggtccataa gcgttaacaa tcacagcttt
     4981 tggaaaacgt tcgcggagct tctgaactgt ttttacagtt aactcctctc cgtcaaaata
     5041 gaaatgcgtc aaatttggta aatgtttccc atcgaactca cgagatagca aagccatatc
     5101 gacaaatgat ggtgtcgaag tccaaatctt aaatggcaaa gtttgaatag ctgcaaataa
     5161 ggttttaaaa tccaaagtca actctttcgg tagggcaaat aaggtcccac caagggcaag
     5221 cgtcggagcc caatacataa ccgacaagtc aaacgaatag gaaggttgag ccaacatttg
     5281 cggtcgctct ggtagcgcaa actccttatc ccttatcatc cagttggtga agctgagcaa
     5341 attgtcatgc gaaatttgca ccccttttgg tttacccgtt gtcccagaag tgaatataat
     5401 atagtaggta tcatctccac ttacaggatg catcaactga taagttgact tcttctcaaa
     5461 aatggcttca acttcagaca aaccaagcac tggcaaactt gtctctagcg gaaagtctgc
     5521 taccgcaaac accaaactcg gctctgctat ttccagaata gcttcaatcc gatccaaagc
     5581 agaatgacta tctacaggga tatatggatg gccagccttg gttaaggcaa caaagattgc
     5641 caacatctgg tactcctgtc cgccaaaaac aagaacagga gagtttgctg gtaaatccaa
     5701 actatcaata tgggctgcta aagaatctga atctgccttt aaatccccat aactgtacaa
     5761 ctgtcctaga taatggtaaa cagggtagtc aggattttct gtcgcaaaat gctctacccg
     5821 ctctaacata ctgctaatct tttttatact ctcctcttta aaactcatta tagataaatc
     5881 ctccctgtcc aatgt
//
LOCUS       DASFRC010000135         5894 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.135, whole genome shotgun sequence.
ACCESSION   DASFRC010000135 DASFRC010000000
VERSION     DASFRC010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5894)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5894)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5894
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.135"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(38..1708)
                     /locus_tag="U1087_001762"
     CDS             complement(38..1708)
                     /locus_tag="U1087_001762"
                     /EC_number="6.3.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019803354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate--tetrahydrofolate ligase"
                     /protein_id="HEM4756211.1"
                     /translation="MKTDIEIAQSVTLKPITEIVEKVGISFDDIELYGKYKAKLSFDK
                     INAVKDNAPGKLILVTAINPTPAGEGKSTVTIGLADALSKIGKKTMIALREPSLGPVM
                     GIKGGAAGGGFAQVLPMEDINLHFTGDMHAITTANNALSALIDNHIHQGNAVGIDQRR
                     IIWKRVVDLNDRALRKVTVGLGGPLNGIPREDGFDITVASEIMAILCLATDINDLKER
                     LANIVIGYRFDRSPVYVRDLAVEGALTLILKDAIKPNLVQTIYGTPAFVHGGPFANIA
                     HGCNSVLATTTALRLADYTVTEAGFGADLGAEKFLDIKVPNLPKAPDAVVIVATHRAL
                     KMHGGVAKTELSAENVEAVKAGFSNLKRHVENIQKYGIPAVVAINEFVSDTADEIAAL
                     KELCAEIGVPVELASVWANGADGGVELAETVVATIENQAANYQRLYKAEDSLEEKVTK
                     IVTQIYGGSGVVFEKKARNQLTEFAKNGWDKLPVCMAKTQYSFSDDQFALGAPTDFDI
                     TVREFVPKLGAGFIVALTGDVMTMPGLPKAPAALNMDVAADGTAIGLF"
     gene            2212..2907
                     /locus_tag="U1087_001763"
     CDS             2212..2907
                     /locus_tag="U1087_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantothenate--cysteine ligase"
                     /protein_id="HEM4756212.1"
                     /translation="MKLLITSGGTSEAIDQVRAITNHASGNLGKIIAEQALKRGHEVT
                     LVTTRQAVKPDSQKNLTIIEITNVDSLKETLEPLVKSHQALIHSMAVSDYTPVYMTGL
                     DELRATEDSSSLLKKQNTESKISSKDDYQVLFLKKTPKVISYVKKWNPAITLFGFKLL
                     VNVPKEELFAVARQSIERNGADYILANDLKDIGENQHIAYLVDKTREIQAQTKDEIAQ
                     LILNTLEKGEQNG"
     gene            2900..3448
                     /gene="coaC"
                     /locus_tag="U1087_001764"
     CDS             2900..3448
                     /gene="coaC"
                     /locus_tag="U1087_001764"
                     /EC_number="4.1.1.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantothenoylcysteine decarboxylase"
                     /protein_id="HEM4756213.1"
                     /translation="MANITLAVTGSISAYKAADLTSQLTKLGHQVTVLMSRSAMDFIT
                     PLTLQSLSKNLVHTDVMIEENPTLIKHIDIAKETDVFLVAPASANTIAKLANGMADNI
                     ITATALALPIGTKKLLAPAMNTNMYLNPATQKNIKTLIEYGFEEIKPREALLACGDFG
                     TGALAEVTDILEKVSNTLDEKK"
     gene            3435..4004
                     /locus_tag="U1087_001765"
     CDS             3435..4004
                     /locus_tag="U1087_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HEM4756214.1"
                     /translation="MKKNKSTQIATIAIFFAVMIVINILSSIIFNILPVPIKPTIVHI
                     PVIIASIIYGPRVGACLGALMGLMSMTHNTIILLPTSYLFSPFVENGNVYSIIIAVVP
                     RILVGITPYFVYKWIKNRKGLFIAGAIGSMTNTIFVLGGIFFLFSSVFDGNIQAMLAT
                     VLGTNSIAEMIISSVLTAALVPTLQKIQK"
     gene            4095..5813
                     /locus_tag="U1087_001766"
     CDS             4095..5813
                     /locus_tag="U1087_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-sugar mutase"
                     /protein_id="HEM4756215.1"
                     /translation="MTYQETYQTWLDFADLPDYLREELVAMDEKTKEDAFYTNLEFGT
                     AGMRGYIGAGTNRINVFVVRQATEGLAKLVESKGEEAKKRGVAIAYDSRHFSPEFAFE
                     SAQVLAAHGIKSYVFESLRPTPELSFAVRHYNAIAGIMVTASHNPKEFNGYKVYGEDG
                     GQMPPADADALTNFIRAIDNPFAVELADLEASKENGLITVLGEETDVKYLEELNDLNI
                     NPELIAEYGKDMKIVYTPLHGTGEMLARRALAQAGFESVQVVEAQATADPDFSTVASP
                     NPESQAAFALAEELGREVGADVLLATDPDADRVGVEVRQADGSYWNLSGNQIGAIIAK
                     YILEAHKQAGTLPANAALAKSIVSTELVTKIAESYGATMFNVLTGFKFIAEKIQEFEE
                     KHNHTYMFGFEESFGYLIKPFVRDKDAIQAVLMVAEIAAYYRSRGMTLADGIDEIFKE
                     YGYFAEKTISVTLSGKDGAEQIKAIMAKFRDNSPAQFNATDIAVFEDFALQTKTDKDG
                     NIEKLTTPPSDVLKYTLADDSWFAVRPSGTEPKIKFYIATVGETLAEAEEKISNIEKE
                     INEFVG"
BASE COUNT         1777 a         1297 c         1143 g         1677 t
ORIGIN      
        1 aaaaaatccg cctttgagcg gatttttcat attcttgtta gaacaagccg atagctgtcc
       61 catctgccgc cacatccatg ttgagagctg cgggagcttt tggcaaacca ggcatggtca
      121 tgacatctcc tgttaaggca acgataaagc ctgctcctaa ttttggaaca aattcacgga
      181 ctgtaatgtc aaagtctgtc ggcgctccaa gggcaaactg atcatctgag aaactgtact
      241 gggtcttggc catgcagact ggcaacttgt cccaaccatt cttagcaaat tcagtcagct
      301 ggttacgagc tttcttctcg aaaaccacac ctgagccacc ataaatctgc gtaacaatct
      361 tggtcacttt ctcttccaag ctatcctcag ccttgtaaag acgttggtag tttgctgctt
      421 gattttcaat agtagcaaca actgtctcag ccaattcaac accaccatca gcgccatttg
      481 cccaaacact tgccaactcg acaggtacgc caatttcagc gcaaagttcc ttcaacgcgg
      541 caatttcgtc agctgtgtca gatacaaatt cattgatagc aacgactgct ggaataccgt
      601 atttctgaat attttcaacg tgacgcttca agttagaaaa accagctttc actgcctcta
      661 cattttcagc agaaagttct gtcttggcta caccaccgtg cattttaagc gcacggtggg
      721 tagcaacaat gactactgca tccggagcct taggcaagtt cggcaccttg atatctagga
      781 atttctctgc tccaaggtct gcaccaaaac ctgcttctgt tacggtatag tcggccaaac
      841 gcagagctgt tgtagttgca agaactgagt tacagccatg agcaatatta gcaaatggac
      901 ctccgtggac aaaggctggc gtgccataga tggtttggac aaggtttggt ttaatagcgt
      961 ccttcaaaat aagagtcaaa gcaccttcca ccgccaaatc acgcacgtag acaggactgc
     1021 gatcgaaacg ataaccgata acaatatttg ccaaacgttc tttcaagtca ttgatgtctg
     1081 tcgccaagca taaaatcgcc atgatttcag aagctacggt aatatcgaat ccatcttcac
     1141 gcggaatacc attgagcgga ccacccaatc caacagttac tttacgcaaa gcacggtcat
     1201 taaggtccac gacccgtttc cagatgatcc tgcgttggtc aatgcctaca gcatttcctt
     1261 gatggatatg gttgtcaatc aaggctgaaa gagcgttgtt agctgtggta atggcatgca
     1321 tatcgcctgt aaaatgcagg ttgatatctt ccatgggcaa gacttgtgca aaaccaccac
     1381 cagcagctcc gcccttgatt cccataacag gccccaaaga aggctcacgg agggcaatca
     1441 tagttttctt tccaatttta gacaaagcat ccgccagacc aatggttact gttgacttac
     1501 cttcaccagc aggcgttggg ttgatagctg tcaccaagat caatttccct ggcgcattgt
     1561 ctttcaccgc attgatttta tcaaaggaca attttgcctt gtattttcca tagagttcaa
     1621 tatcgtcaaa gctgatacca actttttcaa cgatttctgt gattggtttc aaggttacac
     1681 tttgtgcaat ttcaatatct gttttcatga gagctcctaa tttccttatt ttttatggac
     1741 attataccat accacagctt attttcgcat attttttact atttatgcac taacgtacgg
     1801 aattttcaga aaaactacag gtttctttac ttaaacagat acaaattttt aaaacctgca
     1861 ttctcatcat agctctacac ttccatctaa gactgggttt agttagtttt ttcaaaagag
     1921 agtcagtatt cttttaaaaa ttgccttgat gagcaagcaa acgaccgctt gcataaagca
     1981 cttcacttat atagtctttt agtttacttt tagtacgagg caatgagccg caggcataac
     2041 tgaagttagg caaggcgagt taacgaagta ataaaagaaa aactaaatga cgataataca
     2101 ggcccttata tttttttgta ttagcagcat cattttccag tgtcacagat tgattagcaa
     2161 atcgattagt gcaaacttta cgaaaaatag aaattctagt aaaatatgaa catgaaacta
     2221 ttgattacat caggcggaac aagtgaagct atcgatcaag tccgcgctat tacaaaccat
     2281 gcttctggaa atcttggaaa aatcattgcc gaacaagcct tgaaacgcgg tcatgaagtt
     2341 actcttgtga ctacaagaca ggctgttaaa ccagattctc agaagaattt aaccattatc
     2401 gaaatcacaa atgttgatag tttgaaagaa acattagaac ctttagtcaa atcacatcag
     2461 gccctgattc atagcatggc tgtatccgat tatacacctg tttatatgac tggtttagat
     2521 gaactaagag caactgaaga cagttctagt ctactaaaaa aacagaatac agaaagtaag
     2581 atttcatcca aggatgacta ccaagttctt ttcttgaaaa aaactcccaa ggtcatttcc
     2641 tatgtaaaaa aatggaatcc agctatcaca ctctttggct tcaaactatt ggttaatgtt
     2701 cctaaggagg aattatttgc cgtagctcgc caaagcattg aacgaaatgg cgctgattat
     2761 atacttgcta atgacttgaa ggatattgga gaaaatcaac acattgccta tttggttgat
     2821 aaaacaaggg agattcaagc acagacaaaa gatgaaattg ctcagctcat tttaaatacc
     2881 ctagaaaaag gagaacaaaa tggctaatat cacacttgcc gttactggct ctatttcagc
     2941 ctacaaagca gctgacctaa ctagtcaatt gaccaagctc ggtcatcagg ttacagtcct
     3001 catgagtcgc tctgctatgg acttcatcac acctttgact ctccaatcct tgtcaaaaaa
     3061 tctggttcac acagatgtca tgattgaaga aaatcctact cttatcaagc atatcgatat
     3121 tgccaaagaa acagacgtat ttttagttgc ccctgcttct gccaatacga tagctaaatt
     3181 agctaatggt atggctgaca acattattac ggcaacagct ctggctctgc caattggtac
     3241 taaaaaactg ctggcacctg ctatgaatac taacatgtac ctcaatcctg ctacccagaa
     3301 aaatatcaaa accctcatag agtatggttt tgaggaaatc aaaccgcgtg aagccctgct
     3361 tgcttgtgga gattttggaa ctggggcctt ggctgaggta actgatattt tagagaaagt
     3421 gagtaacacc cttgatgaaa aaaaataaat caactcaaat tgctacaatt gcaatcttct
     3481 ttgctgtcat gattgtcatc aatatattga gttcaattat ttttaatata ttgcctgttc
     3541 caataaaacc caccatcgta catatcccag tcattattgc ttctattata tacgggccac
     3601 gtgttggggc ttgtttgggg gctctcatgg gcttaatgag tatgacccat aatactatta
     3661 tcttactacc aaccagctat cttttctccc catttgttga aaatggtaat gtttattcaa
     3721 tcatcattgc agttgtccca cgtatattag tcgggattac accttatttc gtctacaaat
     3781 ggataaaaaa tcgtaaagga ttatttattg ctggtgcaat tggttcaatg accaatacta
     3841 tttttgtact tggaggtatt ttcttcctct tctcctctgt ctttgatggt aatattcaag
     3901 caatgttagc aaccgtttta ggtaccaatt caattgcaga aatgatcatt tcttctgtat
     3961 taactgcagc gcttgttcca actttacaga aaattcaaaa ataaatatca gaaaatcatg
     4021 tgaaagcgtg atttttcttt tcaaacatgg tataatgaaa gcgtttaata gaaaaatttt
     4081 taaggagata tgcgatgact tatcaagaaa cctatcaaac atggctcgac tttgcggacc
     4141 ttccagatta cttgcgtgaa gaattagtcg caatggatga aaaaacaaaa gaagatgcct
     4201 tctatacaaa tcttgaattt ggtacagctg gtatgcgtgg ctatattggc gctggtacca
     4261 accgcatcaa cgtattcgta gtccgtcaag ctactgaagg tttggcaaaa ttggtagaat
     4321 caaaaggtga agaagctaaa aaacgtggtg ttgccatcgc ttacgattca cgtcacttct
     4381 cgccagaatt tgcttttgaa tcagctcaag ttttggcagc gcatggtatc aaatcttatg
     4441 tatttgaaag ccttcgtcca actcctgagt tgtcattcgc tgtgcgccat tacaatgcca
     4501 tcgcagggat tatggtgact gcaagccaca acccgaaaga attcaacggc tacaaggttt
     4561 acggtgaaga cggcggacaa atgccacctg ctgatgcaga tgcattgacc aactttatcc
     4621 gtgccatcga caatccattt gcagttgaat tggctgacct tgaagccagc aaggaaaatg
     4681 gtttgattac ggttcttggc gaagaaactg acgttaaata tcttgaagaa ctcaatgacc
     4741 tcaacatcaa ccctgaattg attgctgaat acggtaaaga catgaagatt gtctatacac
     4801 cgcttcatgg tacgggtgaa atgttggcgc gtcgtgccct tgcacaggct ggttttgaat
     4861 ctgtccaagt tgttgaagca caagcaactg ctgatcctga cttctctact gtcgcttcac
     4921 caaacccaga gagccaagca gcctttgccc ttgcagaaga actcggccgt gaagtcgggg
     4981 cagatgtcct tcttgcaact gaccctgacg ctgaccgtgt tggtgttgaa gttcgtcaag
     5041 ctgacggttc ttactggaac ctgtctggta accaaatcgg cgctatcatt gctaagtaca
     5101 tccttgaagc ccacaagcaa gcaggtacac ttcctgcaaa cgctgccctt gctaagtcaa
     5161 tcgtatctac tgagttggta actaagattg ctgaaagcta tggcgctacc atgttcaacg
     5221 tcttgactgg tttcaaattc atcgctgaga aaatccaaga gttcgaagaa aaacacaacc
     5281 atacttacat gtttggtttc gaagaaagct ttggctattt gattaaacca tttgtacgtg
     5341 acaaggatgc tatccaggct gtgcttatgg ttgctgaaat tgctgcctac taccgttcac
     5401 gtggcatgac cttagctgac ggtatcgatg aaatcttcaa agaatacggc tactttgctg
     5461 agaaaacaat ctctgttacc ctttctggta aggatggtgc agaacaaatc aaggcaatca
     5521 tggctaagtt ccgtgataac tcaccagcac aattcaacgc tactgacatc gcggtctttg
     5581 aagactttgc ccttcaaact aagacagaca aagatggaaa cattgaaaaa ctcactactc
     5641 ctccatcaga tgtcttgaaa tacaccttgg cagatgattc ttggttcgct gttcgtcctt
     5701 cgggaacaga accaaaaatc aaattctaca tcgcaaccgt tggtgaaaca cttgctgaag
     5761 cagaagaaaa aatctccaac atcgaaaaag aaatcaacga atttgttggg taagagtcac
     5821 ataaattaga aagttcaaac cacccgtcaa acaggtggtt tgaacaaggg ctataagccc
     5881 acatcaccag ccag
//
LOCUS       DASFRC010000136         5818 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.136, whole genome shotgun sequence.
ACCESSION   DASFRC010000136 DASFRC010000000
VERSION     DASFRC010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5818)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5818)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5818
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.136"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            303..1580
                     /locus_tag="U1087_001767"
     CDS             303..1580
                     /locus_tag="U1087_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil permease"
                     /protein_id="HEM4756216.1"
                     /translation="MSTKANLLFDVHEKPAPLQGILLSFQHVFAMFGATILVPLILGM
                     PVSVALFASGVGTLIYQVATQFKVPVYLGSSFAYISAMALAIKEMGGDVSAAQTGILF
                     VGLIYVLIAALVKVIGTKWIDSLLPPIVIGPMIIVIGLGLANSAVTSAGFVADGDWKN
                     VVVAIATFLIAAFVNTKGKGFAKIVPFLIAIIGGYVIAIFLGLVNFTPVLEAAWFELP
                     GFYLPFETGAFKSYNFYFGPEMIAILPIAVVTVAEHIGDHTVLSQICGRQFLKDPGLS
                     RTLIGDGVATAVSAFIGGPANTTYGENTGVIGMTRIASVSVIRNAALIAIAFSFLGKF
                     TALISTIPSAVLGGMSILLYGVIASNGLKVLIESRVDFGQVRNLIIASSMLVLGLGGA
                     VLNIGAITLSGTALSAIVGIILNLILPKAEKAE"
     gene            1814..2224
                     /locus_tag="U1087_001768"
     CDS             1814..2224
                     /locus_tag="U1087_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756217.1"
                     /translation="MKTRLSIKKPIIVAIALLGLVSPTVFSRGVLDYSMVLPRIGSTT
                     TGSIVKVTHSRGVNRNDSTGGGKTLNTSIRNYHSGSDITPTYSLPSGARVLMSYHGSG
                     SHYVNETTTLGLATQFGNTVRVQTTGSWSPDEEQ"
     gene            2309..3073
                     /locus_tag="U1087_001769"
     CDS             2309..3073
                     /locus_tag="U1087_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756218.1"
                     /translation="MKFLLMNVRRTVFSKKMLLSFLLAFSCILIGNMVAFNGIYKLEG
                     LSLFFAGSTIRGFSPISLVAAVISAIPIADRVIEDSKNHFLRLQLQRTSRIKYIWTLL
                     VTAGISGFLSLFLPYFLLLVANLCLTPYKEIYIGDYQGVFKSIFDSNQLVYSILITIW
                     YGIFGSVFAVFGLASSLAFRQKIVGVFFPCLYMILGGLFFALLDLSFLEPVGIISWGY
                     QFQLNFLLVFLHLLCIFTICLGMILYHFQFRVEDSI"
     gene            3837..4568
                     /locus_tag="U1087_001770"
     CDS             3837..4568
                     /locus_tag="U1087_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756219.1"
                     /translation="MRESSIIKNSLFWEWRCLTTSSQFYIYLILSGMYYLLLALLNFF
                     EVGFGEYLLKGPGLDGIETISLLSYLLFQAQNIFLLQQLFSGLSTTNFNLTILRIGSI
                     KDWFLVKLVSLIFLSLLLGLFQTVPLFFIGNMDYLFFLHFFVVNSTNFILFSSLLFLL
                     FHFDFSDAVSFCITYSLLVFIIFSGEILGENTNYFVTILARVAEYEKNSNLSLFIAIF
                     FEIILSAAILSFIKIRYSLGGKIHE"
     gene            4561..5202
                     /locus_tag="U1087_001771"
     CDS             4561..5202
                     /locus_tag="U1087_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4756220.1"
                     /translation="MNNSIIKIENLSKKFKNCDLFDNLHFECSEGEIVGITGINGSGK
                     SVLFKLIAGLMQPNSGTIKVYGEDIVGKIPSGLGALIEEPGFIPNYSGFENLEFLSTI
                     QNIIGKEEILATLHRVGLFEDKDKKVRNYSLGMKKKLGIAQAIMEEPRILLLDEPTNA
                     LDSQSVQRVYDLLKELSKEKGVTVLLASHNDSDIRHLCDKVYLLENKQCKLLK"
     gene            5457..5726
                     /gene="rpsO"
                     /locus_tag="U1087_001772"
     CDS             5457..5726
                     /gene="rpsO"
                     /locus_tag="U1087_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001018251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HEM4756221.1"
                     /translation="MAISKEKKNEIMAQYARHEGDTGSVEVQVAVLTWEINHLNDHIK
                     QHKKDHATYRGLMKKIGRRRNLLAYLRRTDVNRYRELIHSLGLRR"
BASE COUNT         1608 a          990 c         1170 g         2050 t
ORIGIN      
        1 cgaaaggagg atggctatgg catgaaaaat cttcgtttaa agttagcgcg tgtggaaaaa
       61 gagttggaag aagaaatgga gtaataataa gcagttcagc ttcctgctct gccattttcc
      121 taaaaaataa aaatttacaa aattccttgc caaaagtaag ggcttatgtt acaataccaa
      181 aagcgtaggt ttttaaactc atcccgtgag gtgagaaaga caacaggata attcattaag
      241 ggcctatgac tatgtatatt tagaaagtct gggtcttttt gtgtacccag aatgggagat
      301 ttatgagtac aaaagccaat cttttgtttg atgtccatga gaaaccagca ccgcttcaag
      361 ggattttgtt gagtttccag cacgtgttcg ctatgtttgg tgcgacgatt ttggtgccac
      421 tgattctcgg tatgcctgta tcggttgccc tcttcgcatc aggtgttggg accttgattt
      481 atcaagtggc aacccagttt aaagttccag tttacctggg ttcatccttt gcctacattt
      541 ctgctatggc gcttgctatc aaggaaatgg gtggtgatgt gtcggcagct cagactggta
      601 ttctcttcgt cggcttgatt tacgtgttga tcgctgcact tgtcaaagtt atcggtacta
      661 agtggattga cagcctcttg ccaccgattg tcatcggtcc aatgattatc gtcatcggtc
      721 tgggtcttgc caactctgcc gtgacttcag caggcttcgt cgcagacggc gactggaaaa
      781 acgtcgtcgt ggcgattgcg accttcttga ttgcggcttt tgtcaatacc aaagggaaag
      841 gcttcgccaa gattgttcct ttcttgattg ccattatcgg tggttatgtg attgccatct
      901 tccttggcct ggttaacttt acacccgttc tggaagcggc ttggtttgaa ttaccaggtt
      961 tctacctacc atttgaaaca ggtgccttca agtcgtacaa tttctacttc ggtccagaaa
     1021 tgattgctat cttaccaatt gctgttgtaa cagtagctga gcatatcggt gaccacaccg
     1081 ttctcagcca aatctgcggc cgccagttct tgaaagatcc aggcctcagc cgtaccttga
     1141 ttggagatgg tgtagcgact gctgtatctg cctttatcgg tggaccagcc aatacgacct
     1201 acggtgaaaa tacaggggtt atcggtatga ctcgcatcgc atcagtatcc gttatccgca
     1261 atgcagcctt gattgccatt gccttctcat tcttgggtaa atttacagcc cttatctcaa
     1321 ctattccaag tgccgttctt ggtggtatgt ctatcttact ttacggtgtt atcgcctcaa
     1381 acggtttgaa agttttgatt gaaagccgtg ttgactttgg tcaagttcgc aacctgatta
     1441 ttgcaagctc aatgctggta ttgggccttg gtggagcagt tctcaacatc ggtgccatca
     1501 ccctttcagg tacagccctc tcagccattg taggtattat cctcaatctt atcttgccaa
     1561 aagcagaaaa ggctgagtaa aattgaaaat aacagcaagt cagccccggc tggctttttt
     1621 tgatggtgta gaggagattg gggtgaaata attagttttc gaggagtgtg aaaggtttag
     1681 ttgtttaatt ctcctgtcat atttcctaag tttatttaat tataaccttg atatttttta
     1741 ccatacttga tataatttac atatcaatat aaacaacttc cttataaggt tttcatgaaa
     1801 ggagaagatt cacatgaaaa cgagattatc tataaaaaag ccaattatcg tagcaatagc
     1861 attattggga ttagtttctc cgacggtttt ttcaagagga gtactagatt attccatggt
     1921 cttaccacgt ataggatcta caacaaccgg tagcatagtc aaggtgactc attcgcgagg
     1981 agtgaatcgc aatgattcta caggtggtgg aaagacttta aatacctcaa tacgaaatta
     2041 ccacagcggt agtgatataa ctccgaccta ttctcttcca tctggtgcta gggttctcat
     2101 gtcttatcat ggaagtggta gtcattatgt caatgaaacg actactttgg gattagctac
     2161 tcaattcgga aatacagtta gagtacaaac gactggcagt tggagtccag atgaagaaca
     2221 gtgattagta atgagctagg aagttgttta ttgagactat tgagctagtg gaatttattc
     2281 acctagctct ttttactagg aggtaaaaat gaaattttta ctaatgaatg ttagaagaac
     2341 tgttttctct aaaaagatgc ttttgtcttt tctcttggca ttttcctgca ttttgatagg
     2401 gaatatggtt gcttttaatg gcatatacaa acttgaagga ttgtccctgt tttttgcagg
     2461 atcgactatc aggggttttt cgccgataag ccttgtggca gcagttatca gtgcgattcc
     2521 gatagctgat cgggttattg aggatagtaa gaatcacttt ctgcgcctgc aattacaaag
     2581 aacatcccgt ataaaatata tttggactct tcttgtgacg gcaggaattt caggattttt
     2641 gtcccttttt ttaccctatt tcctgctttt ggttgcaaat ctatgtctga cgccatataa
     2701 ggaaatatat attggtgact atcaaggtgt ttttaagtct atttttgata gtaatcagtt
     2761 agtttattct atcttaataa cgatatggta tgggattttt ggtagcgttt ttgcagtatt
     2821 tggcctagct agttctcttg cttttcgtca aaaaattgtt ggggtatttt tcccttgcct
     2881 ctatatgatt ttgggcgggt tgttttttgc cttgctagat ttgtcttttt tagagcctgt
     2941 tgggattatt tcttggggtt accagtttca attaaatttt ctacttgtat ttttgcatct
     3001 actgtgtatt tttaccatct gtcttggaat gattttatat cattttcagt tccgagtgga
     3061 ggatagtata tgagattttg tagaattcta ttttttcata aaaaatctac tatcttcaga
     3121 ttatttttta tcatcttact tgggagtttg attttttcaa ataccaccta tcaatattat
     3181 ttaggtcatt atcaacttgt tccaaatgtt tttacctggc tactgattct atgccaagat
     3241 ataacaacag gtgtctacct gataccgatt atctacactg ctattttatt tttttgtata
     3301 gaagttttta caagagatac atttgtcaca ctgcgttttt tatccatcaa agataagtat
     3361 tactttttat taaattatag cttgctactt ccattcttat ttgtatttct tctgatgtgt
     3421 ctggtatttt tgatggggtt ggtaaattcg ttttcttttt caatttcttc tatacatcaa
     3481 ccacttctat cagaagttta tgaaatatct tacgtttcta attttcaaag tatacttttg
     3541 cccttgttta gttttttatg ttatcttatt ttcctctcgg aaatagcctt gtttaatttt
     3601 cttctttttc aaaaaggaag tacagtcatg gctaatcttt tctcattttt gttaatacaa
     3661 tctgttttct ggttttatcc gatcaatgca accattagtc aagtctttcc tatccatcac
     3721 tatattttaa aatcagtaag ttaccacaag gagttattgt attggctaat tctcttgctt
     3781 tttttcattt tgttaaacct atataaaata agaaatacag agtgggagga ataggaatga
     3841 gggagagttc cattataaaa aattctttat tctgggaatg gcgttgtttg actactagct
     3901 ctcagtttta tatttatcta attttatcag ggatgtatta cttattgtta gcgctattga
     3961 atttttttga agtcggcttc ggtgagtatc ttctaaaagg tcctgggttg gatggcatag
     4021 aaaccattag tctactttct tacctattgt ttcaagcaca gaatattttt ttgttgcaac
     4081 agctattttc tggtttatca acaacaaact tcaacttaac gatactaaga attgggagta
     4141 taaaagattg gtttcttgtc aagcttgtgt ccttgatatt tctatcactt ttattggggt
     4201 tgtttcaaac agttcctctg ttttttatag gtaatatgga ctatttgttt ttcttgcatt
     4261 ttttcgtagt taatagcact aattttattt tgttcagttc attgctcttt ttattgttcc
     4321 attttgattt ttcggatgct gtctcgtttt gcattactta ttctttactc gtttttatca
     4381 ttttttcagg agaaatttta ggagaaaata caaattattt cgttacgata ttggcacggg
     4441 tagctgagta tgagaaaaat tcaaatttgt cacttttcat cgctatattc tttgagatta
     4501 tactaagtgc ggcgatactt tcttttataa agatcagata ttctttggga ggtaaaatac
     4561 atgaataata gtattataaa aattgaaaac cttagcaaaa aatttaagaa ttgtgattta
     4621 tttgataatt tacactttga gtgttcggaa ggggaaatag tagggataac tggtataaat
     4681 ggttcgggga agagtgttct gttcaaattg atagcgggcc ttatgcaacc gaattctggg
     4741 actatcaagg tgtatggaga agatattgtc ggaaagattc catctggttt aggagcatta
     4801 attgaagaac caggctttat tcccaattat agtggatttg aaaatttaga atttttatca
     4861 actatccaaa atatcattgg taaggaagaa atacttgcaa ccttacatcg tgtaggactc
     4921 tttgaagata aggataaaaa ggttaggaat tactctctcg gtatgaagaa aaaattagga
     4981 attgcacagg ctattatgga agagcctaga atccttctat tggatgagcc gacaaatgct
     5041 ttggatagtc agagcgttca gagggtgtat gacttgctaa aagaactttc aaaagaaaag
     5101 ggtgttacgg ttttattggc cagtcataat gatagtgata ttagacatct atgtgataaa
     5161 gtttatcttc tcgaaaataa gcaatgtaag ttattgaaat agaaataatt tatgaattgt
     5221 gcattcagtt ttgtacaaaa ttcgtgacta ttttgacggt acggctaatt tgtaaaggtg
     5281 aatttgaaaa agaatagaga aagtctactc ggtttattgg aagataatat cagttgacaa
     5341 aagagttatt ccttgataga ataaatgagg tccaaaaagg acaaatctag ctttttcttg
     5401 gttacaggtc gccaacctgt cactcggatt aggctcaaaa caaaggagaa catatcatgg
     5461 caatctcaaa agagaaaaaa aatgaaatca tggcacaata tgctcgtcat gaaggcgaca
     5521 caggttcagt tgaagtacaa gtagcagtac ttacttggga aatcaaccac cttaacgacc
     5581 acatcaaaca acacaaaaaa gaccacgcaa cttaccgtgg tttgatgaaa aaaatcggtc
     5641 gccgtcgtaa cttgttggca tacctacgcc gcacagacgt aaaccgttac cgtgaattga
     5701 ttcactcact cggactccgt cgttaatata ggaaactgcc atgtcttcgg acattggcag
     5761 tttttcttat gttccattat ggaagtgtag tgctcggaaa aagctgggtg ttctgtaa
//
LOCUS       DASFRC010000137         5804 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.137, whole genome shotgun sequence.
ACCESSION   DASFRC010000137 DASFRC010000000
VERSION     DASFRC010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5804)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5804)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5804
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.137"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(23..574)
                     /locus_tag="U1087_001773"
     CDS             complement(23..574)
                     /locus_tag="U1087_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002268947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HEM4756222.1"
                     /translation="MTKALISIDYTIDFVADEGKLTAGKSAQAISERIAQVTQEAFEN
                     GDYIFFAIDGHEEGDGFHPEAQLFPSHNIIGTQGRDLYGPLADFYQKHKGHARVRWMD
                     KRHYSAFSGTDLDVRLRERGVDTVVLTGVLSDICVLHTAIDAYNKGYRIEVVSSAIAA
                     LTEENHQFALNHLRHVLGATIID"
     gene            complement(576..1364)
                     /gene="codY"
                     /locus_tag="U1087_001774"
     CDS             complement(576..1364)
                     /gene="codY"
                     /locus_tag="U1087_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016399190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-sensing pleiotropic transcriptional
                     regulator CodY"
                     /protein_id="HEM4756223.1"
                     /translation="MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSC
                     IINSEGEVLGYHMNYETNNDRVEEFFQNKQFPEGYVKAVAQVYDTQVNLPVESELTAI
                     PVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
                     FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITR
                     SVIVNALRKLESAGIIESRSLGMKGTYLKVLIPAIFDEIKKRDY"
     gene            complement(1516..2730)
                     /locus_tag="U1087_001775"
     CDS             complement(1516..2730)
                     /locus_tag="U1087_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011836593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEM4756224.1"
                     /translation="MKQFNKSTKLDDVAYDIRGPVLEEAMRMRANGEQILRLNTGNPA
                     EFGFTAPDEVIRDLIHNARKSEGYSNSKGIFSARKAIMQYCQLKKFPNVDIEDIYLGN
                     GVSELIVMSMQGLLDNGDEVLVPMPDYPLWTAAVSLAGGKAVHYVCDEAAEWYPDLAD
                     MESKVTSRTKAIVLINPNNPTGALYPKEILEGIIDIARRHELIIFSDEIYDRMVFDGA
                     VHIPIATLAPDLFVVTMNGLSKSHRICGFRVGWMVLSGPKKHVKGYIEGLNMLSNMRL
                     CSNVLAQQVVQTSLGGYQSVDELLMPGGRLYEQREFITKAINDIPGLSAVKPKAGLYV
                     FPKIDREMYRVEDDEQFVLDFLKQEKVLLVHGRGFNWKDPDHFRIVYLPRVDELAEIQ
                     EKMSRFLRQYRR"
     gene            2885..3337
                     /locus_tag="U1087_001776"
     CDS             2885..3337
                     /locus_tag="U1087_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015445117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEM4756225.1"
                     /translation="MTQSYKTILVAVDGSKGAELALHKAIHVALRNQARLIIAHVIDT
                     RALHNVIAFDASVYESLEREAELLLEEYKQEALNAGLTDVQIRIEFGNPKTLLAIDIP
                     KETGADLMLLGATGLNAFERLLIGSSSEYIMRHATIDLLIVRDGEKSL"
     gene            complement(3353..3871)
                     /locus_tag="U1087_001777"
     CDS             complement(3353..3871)
                     /locus_tag="U1087_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM4756226.1"
                     /translation="MFQSKDDNFNRVKDFHFLMDGETQELPSVYDGQTALHRAGFKVE
                     ELVEFLHAASESEVEFHDFIQQLHQDLDTAVAKVSGKRGFGVSMHDQVDALLDILYFT
                     YGSFVLMGVDPEPIFQIVHTANMGKTFPDGKAHFDPITHKILKPDDWEERFAPEEKIQ
                     EELKRQMKRLDS"
     gene            complement(3873..4718)
                     /locus_tag="U1087_001778"
     CDS             complement(3873..4718)
                     /locus_tag="U1087_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM4756227.1"
                     /translation="MTIKAVFFDIDGTLLTDNRMVSSLTILAINALKEKGILVGLATG
                     RDPRFVLQYMASLGLDLVIAYNGQYIFSREEVIYSQSLEPKQIEQIMEYAQTHHKDLS
                     FGTAKGIFGSKIMSAGTGNFAYRVTRMIPESWAGIINFIFNRLVRWISPQQETNLKGF
                     LFQPIYQLMLLTTERETQSLEVLFPNLSFTRSSPYATDIISKGNSKLSGIVKVADRYG
                     FELDEVMVFGDSNNDFEMLNEIQHSVAMGNGTKKVKQAASFVTDTNNRDGIYKALIHF
                     GVIEG"
     gene            4788..5747
                     /locus_tag="U1087_001779"
     CDS             4788..5747
                     /locus_tag="U1087_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HEM4756228.1"
                     /translation="MKKILVLHTGGTISMQANHQGEVASSKINPMTQIDSPLEEIQVT
                     SLDFLNVPSPHIRLEHMMTLYQKIKEEQMNFDGFVITHGTDTLEETAYFLDTMAIPEK
                     PIVLTGAMRSSNELGSDGIYNYRTALRVAADAKSADKGVLVVMNDEIHAAKYVTKTHT
                     TNVSTFQTPTHGPLGLVTKREILYFKTAEPRVRFDLSTVTGTVPIIKAYADMDSILLD
                     SLTASSISGLVIEALGAGNLPPTIIPAIKKLLDQKIPIILVSRCFNGIAEPVYAYQGG
                     GIQLEQDGILFVKELNAQKARLKLLIALNADLEEQSLADYIQG"
BASE COUNT         1859 a         1399 c          916 g         1630 t
ORIGIN      
        1 tttcccactc cacactatac tattagtcaa taattgtcgc accgagtaca tgacgcaaat
       61 ggttaagagc aaactgatga ttctcctccg tcaatgcagc aatggctgat gagaccacct
      121 caatacgata ccccttatta taagcatcaa tagctgtatg aagaacacaa atatcagaca
      181 aaacacccgt caagacaacc gtatctacac cacgctctct tagtcgaaca tccaaatccg
      241 tcccagaaaa agcagaataa tgacgtttat ccatccaacg aacacgcgca tgccctttat
      301 gtttttgata aaaatctgct aaaggaccat acaagtctcg cccttgcgtc ccaatgatat
      361 tatgacttgg gaaaagctga gcttcaggat gaaatccatc cccctcctca tgaccatcaa
      421 tcgcaaagaa aatatagtct ccattttcaa aagcttcttg cgtaacctga gcaattcgtt
      481 cagaaatagc ctgagctgat tttccagcag tcaactttcc ttcatctgcc acaaaatcta
      541 ttgtataatc aatcgaaatc aatgcttttg tcattttagt agtcacgttt cttaatttca
      601 tcaaaaatag ctgggataag aactttcaaa taagtcccct tcattcccaa agaacgactt
      661 tcaataatcc ctgcactctc caacttacgc agtgcattca caatcaccga gcgtgtaata
      721 ccgatacgat ctgcaatcac agaagcagtc aattgcccct cattgccatc caattcaccc
      781 aaaatagctg caactgcctt catttctgag taagacagcg tatttaccgc catattaact
      841 gccgcacgac gacggatatt cttctcgtct tcttcccgtt ggaaattaag taactgaata
      901 ccaactaccg ttgccgcaat ctcaaccaaa atcaaatcat catcgtgaaa ctgctcatca
      961 tttcgccaaa taataagcga accaaaacga attcccgtca catggatagg cgctatcgtt
     1021 gtcagaccat ttggataagt cgatcttgat tcgacaggga tggcagtcaa ctcgctctcg
     1081 acaggcaaat taacctgcgt atcgtaaacc tgcgcaactg cttttacata tccttctggg
     1141 aattgtttat tttgaaaaaa ttcttccaca cgatcattgt tcgtctcata gttcatgtgg
     1201 tatcccaaaa cttcaccttc actattaatg atgcacgagt tgcagtcaat aatagctgat
     1261 aaatgctcag caatggcatt gtaaggcaat tcttctgcca attgctcttc ggaacgcttc
     1321 aaaatagaag taatattccg tgtcttctct aataatgttg tcatattttc ctctttactc
     1381 tgtaattgct ttcagtatag caaaaaatac ataaaatttc aacaattatc agaatattta
     1441 ccgttgttag aaaaatacaa acaattccat tcaagtaaaa agaaaaggct gattaacatt
     1501 cagcccaaaa ttccattacc tacgatattg ccgcaagaat cgtgacattt tttcttgaat
     1561 ttctgccaac tcatccacac gtggtaaata cacaatacgg aaatgatctg gatccttcca
     1621 gttaaaacct cgaccatgga ccaaaagtac tttttcttgc ttgaggaaat ccaatacaaa
     1681 ttgttcatca tcctcaactc ggtacatctc acgatcaatt ttggggaaga catacagacc
     1741 agccttaggt tttacagcag aaagccccgg aatatcatta atcgccttgg taataaactc
     1801 cctttgttca tataagcgtc caccaggcat caagagttca tcaaccgatt ggtagcctcc
     1861 caaagaagtt tgaacaacct gttgagccaa aacgtttgaa cacaaacgca tattggacaa
     1921 catattcaag ccttcaatgt aaccttttac atgctttttc ggaccagata agaccatcca
     1981 acctactcgg aaaccacaaa tacgatgcga tttagacagt ccattcatcg tcacaacaaa
     2041 taaatctgga gccagtgtcg caatagggat atgaacagct ccgtcaaaga ccatacgatc
     2101 ataaatctca tcagagaaaa taatcaattc atgtctacga gcaatatcaa tgattccttc
     2161 taaaatttct ttcggataga gagcaccagt tggattattt ggattgataa ggacaattgc
     2221 tttggttcga gaagtcacct tggactccat atctgccaaa tctggatacc attcagctgc
     2281 ttcatcacaa acatagtgaa cagctttacc accagccaaa ctaactgcgg cagtccagag
     2341 aggatagtct ggcattggca ccaacacctc atcaccatta tctagcaaac cttgcataga
     2401 cataacaatc agctcactca cgccgtttcc aagataaata tcttcaatgt caacatttgg
     2461 aaatttcttt agctgacaat actgcatgat agccttacgt gcagaaaaaa ttcccttact
     2521 attcgaatat ccctctgatt tacgggcgtt atgaatcaag tcacgaataa cttcatctgg
     2581 agcagtaaaa ccaaattctg caggattccc cgtattcaaa cgtaaaatct gctctccatt
     2641 ggcacgcata cgcatggcct cttccaaaac aggcccacga atatcatatg ctacatcatc
     2701 caattttgtt gacttgttaa attgcttcat gtcgtcacct cgactttcta tcttttctat
     2761 tgtactgtaa aagctaaaaa agtacaagaa tcctttacat tttctctcaa aaggcttata
     2821 ataaaaatgt aaggaactac tctacctatt tcgggacaaa gctcttctga aaggagttat
     2881 tattatgaca caatcttaca aaaccatact cgtcgctgta gacggctcta aaggagcaga
     2941 attagctctt cataaagcta ttcatgtcgc actacgcaac caagcacgtc tgattatcgc
     3001 ccatgtgatt gacacccgtg ctctccacaa tgttattgca tttgacgcct ctgtctatga
     3061 atctttagaa agagaggcgg agctcctcct cgaagaatac aaacaagaag ccctcaacgc
     3121 tggtctgacc gatgtacaaa ttcgcatcga atttggtaac cctaaaaccc tattggctat
     3181 cgatattcca aaggaaaccg gtgctgatct tatgttactt ggggcaactg gtctaaatgc
     3241 ctttgaacgt ctcctgatcg gatcctcatc cgaatatatc atgcgccacg caactatcga
     3301 tttactcatt gttcgcgatg gagaaaaaag tttataaacc aaaagacttg atttacgaat
     3361 caagtctttt catctgtctt ttcagctctt cctgaatctt ttcctccggc gcaaaccgtt
     3421 cttcccaatc atcaggtttt aaaattttat gggtaatcgg atcaaaatgg gccttcccat
     3481 ctggaaatgt tttccccata tttgcagtat ggactatctg aaaaattggt tctggatcaa
     3541 cccccatcaa aacaaacgaa ccatatgtaa aataaagaat atccagcaaa gcatctacct
     3601 gatcatgcat cgaaaccccg aaacctctct tgccagatac cttagcaaca gcagtatcta
     3661 aatcctgatg aagttgttga ataaaatcat gaaactcaac ttcagattct gaagctgcat
     3721 gtagaaattc taccaactcc tccactttaa aaccagcgcg atgcaaagcc gtctgtccat
     3781 catacacact gggaagttct tgggtttcac catccattaa aaaatgaaaa tcctttaccc
     3841 tattaaaatt atcgtccttg ctctgaaaca tcttatccct caatcacacc aaaatgaatt
     3901 aatgccttat aaatcccatc acgattattt gtatctgtaa caaaggaagc tgcttgtttc
     3961 acctttttcg tcccatttcc catcgctacc gagtgctgaa tttcattcaa catttcaaaa
     4021 tcattattag aatccccgaa taccataact tcatctaact caaaaccata ccgatctgca
     4081 acctttacaa tacccgataa ttttgaattt cccttactga taatatcagt cgcataggga
     4141 ctcgaacgcg taaaagacaa gttcggaaag agcacctcca atgattgtgt ctccctttcc
     4201 gtcgtcagca acatcagctg atagattggt tgaaagagaa aacctttcaa attcgtttcc
     4261 tgttgaggac taatccaacg taccaagcga ttgaaaataa agtttatgat tccagcccag
     4321 gactccggaa tcatacgcgt cacacgatag gcaaaatttc ctgttccagc actcataatc
     4381 ttactaccaa atatgccttt agcagttcca aaagataaat ccttatggtg agtttgcgca
     4441 tactccataa tttgttcaat ttgctttggc tctaaactct gactataaat aacttcttct
     4501 cttgaaaaaa tatattgacc attataagca atgaccaaat ctagccctaa actagccata
     4561 tactgcaaaa caaaacgagg gtcacgtcct gtagctagac caactaaaat ccccttctct
     4621 ttcaaagcat taatggcgag aatagttaaa ctactaacca tacgattgtc ggtcaataag
     4681 gtaccatcaa tatcgaaaaa tacagccttt atcgtcaacc aactcaccta ctttctaaga
     4741 attatgttac aattagtata tcacactttg aaagaaactg aaaatttatg aaaaaaattc
     4801 tagtactgca tacaggtgga accatttcta tgcaagctaa tcatcagggt gaagttgcat
     4861 cgagtaaaat caatccaatg acccaaattg atagcccact agaagaaatt caagtgacat
     4921 ccttggattt tctcaatgtt ccaagtccac acattcgctt agaacacatg atgactctat
     4981 accaaaaaat caaagaagaa caaatgaact tcgatggttt tgtcattaca catggcacag
     5041 atactttaga agaaactgcc tatttccttg atacaatggc tattccagaa aaaccaattg
     5101 tattgaccgg agctatgcgt tcctcaaatg aactaggtag cgacgggatt tataactacc
     5161 gaacagccct acgtgtggct gctgatgcta aatccgcaga taaaggtgtt ctagtggtca
     5221 tgaacgatga aattcatgct gctaaatatg ttacaaaaac ccataccacc aatgtctcaa
     5281 cctttcaaac accaacccat ggaccactgg gattagtcac caaacgagag attctctatt
     5341 ttaaaactgc tgaaccacgt gttcgatttg acttatcaac agtcacagga acggttccaa
     5401 tcataaaagc ttatgcagat atggactcca ttctccttga ttctctcact gcaagctcaa
     5461 tttccggttt agtcattgaa gcactcggcg ccggaaatct tccgcctacc atcattccag
     5521 ccattaagaa actccttgat caaaagatac ccattattct ggtatctcgc tgttttaacg
     5581 gaattgctga gcctgtctat gcctaccaag gaggtggcat ccaactggag caagacggca
     5641 ttctatttgt taaagaattg aatgctcaaa aagcccgact caaactcctt atcgctctca
     5701 atgcagactt agaagagcaa agcttggcag attacatcca aggttaatcg ctgacgaact
     5761 attcaatatg tcaaaagacc aacacatgtg tgttggcctt tttt
//
LOCUS       DASFRC010000138         5784 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.138, whole genome shotgun sequence.
ACCESSION   DASFRC010000138 DASFRC010000000
VERSION     DASFRC010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5784)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5784)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5784
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.138"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(36..584)
                     /locus_tag="U1087_001780"
     CDS             complement(36..584)
                     /locus_tag="U1087_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HEM4756229.1"
                     /translation="MISLAIILILAWSFYIGYSRGLVLQAFYSMGSIIALVVATATYK
                     KLASFLYLWVPFANATQGSSNYYFDEKYLFDLDMVFYAGLAFLLIYVLVYAIVRFIGI
                     FVHLLEAFNPDTKTTNLISGALAVLVTFISLQIVMVLLSTIPLAMIQDKLHSSFLANI
                     MIQYTPFTSSFLKSLWLSNIAG"
     gene            complement(581..892)
                     /locus_tag="U1087_001781"
     CDS             complement(581..892)
                     /locus_tag="U1087_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756230.1"
                     /translation="MANLNRYKFTFGEKQLTLTTEHDNLFMEEIERIAQEKYQAIKEK
                     MPTADPETLALLLAINALSVQLTREMAFEQKEQELASVKEKVLKKNVTLIDLDELEDK
                     V"
     gene            complement(950..1663)
                     /gene="treR"
                     /locus_tag="U1087_001782"
     CDS             complement(950..1663)
                     /gene="treR"
                     /locus_tag="U1087_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose operon repressor"
                     /protein_id="HEM4756231.1"
                     /translation="MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQELYGVSRDTVR
                     KALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLTSYQELTNVLQLSTKTDVVSLDM
                     ITVNSSLSHLTGFETYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
                     EYLENKLGLDIAYAQKEITVEPTSREERDLMQIQDDYLVLIKSRVYLGDTRQFQYTES
                     KHKIDKFRFVDFARRKHSL"
     gene            1896..3891
                     /gene="treP"
                     /locus_tag="U1087_001783"
                     /pseudo
     CDS             1896..3891
                     /gene="treP"
                     /locus_tag="U1087_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636547.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system trehalose-specific EIIBC component"
     gene            3972..5597
                     /gene="treC"
                     /locus_tag="U1087_001784"
     CDS             3972..5597
                     /gene="treC"
                     /locus_tag="U1087_001784"
                     /EC_number="3.2.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-phosphotrehalase"
                     /protein_id="HEM4756232.1"
                     /translation="MTIDKRKVVYQIYPKSYKDTTGNGVGDLRGIIEKLPYLKELGID
                     MIWLNPFYPSPQRDNGYDISDYTAVNPDFGTMADFEEMVAVGKELGIEFMLDMVLNHC
                     STEHEWFQKALAGDKYYQDFFILRDQPTDWVSKFGGNAWAPFGDTGKYYLHLFDVTQA
                     DLNWRNPHVREELFKVVNFWKDKGVKGFRFDVINLIGKDEVLEDCPINDGKPAYTDRP
                     ITHDHLMMMNKATFGSEKGFMTVGEMSATTIENCILYTAPEREELSMAFNFHHLKVDY
                     KDGQKWTIMDFDFEELKRLFHTWGEEMSVGNGWNALFYNNHDQPRALNRFVDVKNFRN
                     EGATMLAASIHLSRGTPYIYMGEEIGMIDPDYDSMDDYVDVESINAYQMLLDQGHTPE
                     QAFKIIQAKSRDNSRTPMQWDASDNAGFSTGTPWLKAGKSYPTINVEQEKTGPIFTFY
                     QALIRLRKELPLISEGDYKAAYKDRQKVYAFERLLNDEKLLVLNNFFAEEVELDLADE
                     YARGQVLISNYPDNKLGKKITLKPYQALAILVK"
BASE COUNT         1680 a         1321 c         1175 g         1608 t
ORIGIN      
        1 tatcataaat gacgataaaa aggataaggt ctcccttacc ctgctatatt actcaaccag
       61 agagatttta aaaagctact agtgaatggt gtgtactgaa tcatgatgtt ggcaagaaaa
      121 ctactgtgca atttatcttg aatcatcgct aacggaatag ttgatagcaa gaccatgaca
      181 atctgaagag aaataaaagt caccaagaca gccaaggcgc cgcttatgag attagtcgtt
      241 tttgtatcag gattaaaagc ctctaataga tggacaaata ttcctatgaa acgcacaata
      301 gcataaacca agacgtatat caaaagaaag gccaatcccg cataaaatac catatctagg
      361 tcaaagagat atttctcatc aaaataatag ttggagctcc cctgagtagc attggcaaat
      421 ggcacccaga gataaaggaa ggatgccaat tttttataag tagccgtcgc aaccaccaga
      481 gcaataatac ttcccatgct ataaaaggcc tgtagaacta gaccacgact gtagccaatg
      541 tagaaactcc atgccaaaat gagaataatt gctaatgaaa tcataccttg tcctcaagct
      601 catctaagtc aatcaaggtc acattctttt tcaagacctt ttctttgacg cttgcaagtt
      661 cttgttcctt ttgttcaaat gccatctcgc gcgttagttg aacggataga gcattgattg
      721 ccaacaaaag cgcgagggtt tcagggtccg ccgtcggcat cttttctttg atggcttggt
      781 atttttcctg tgcaatacgc tcaatctctt ccatgaataa attatcatgc tcagttgtca
      841 aggttaattg cttctcgcca aatgtaaatt tatatcgatt taagtttgcc atatcttacc
      901 tcttcttcta tctattatag cgtaaaaaac ttgatttggc taatctctcc tataaagaat
      961 gctttctacg agcaaaatct acaaagcgga atttatcaat cttgtgctta ctttcagtgt
     1021 attgaaattg tcgcgtatct cctaagtaga ccctggattt tatcaacacc agataatcat
     1081 cctgaatctg catcaaatct cgttcttctc gactggtcgg ctctaccgta atctcttttt
     1141 gtgcataagc aatatcaagg cctaacttat tttctaggta ttcgtagatg gatttttcag
     1201 caatagcagt tgtcaactct ggcacgacat cgacagcaag ataatctgta tccacaacgg
     1261 agaccttacc gtcaatcgaa cgtgtacgga caactttcca caccttgcta tacgtctcaa
     1321 agcctgtcaa atgcgaaagg ctactattaa cggtaatcat atctaagctg acaacatctg
     1381 tcttggtaga aagctggaga acatttgtca attcctgata ggaagttaaa cctgaaactg
     1441 ggaaattgag aatttcttgc ttaaggacca ttgaaccacg cccttgcact ttttgaatca
     1501 aacctccctc agtcaaaatc gccaacgcct tacgaaccgt atcacgacta acaccataga
     1561 gttcctggag ctgctgttct gtcggtaggg agctttctgc cggataaaca tttgtccgta
     1621 ttttttcttt taagtcatta taaatttctt ggtatttttt catcatttcc tcgcaaattc
     1681 atctgtcaaa taacatacaa ctatcaacat tataacaaaa ttcatttcaa aattaaaaaa
     1741 actaagcaaa aacgcttgca ttattttttg aaatcggata caatgataac acaaaagaaa
     1801 tttgtccgta caaatttcaa aaaaggacat acttagagag atgcctaaaa aatatagggc
     1861 gacagattcc ataagctgtc tagaaggaaa aatatatggg aaaatttgaa aaagaagcca
     1921 aacagctctt ggacgctatt ggcggaaaag aaaatgttaa cgcagttact cactgtgcaa
     1981 cacgcatgcg ctttgttctt gcagatgaga aaaaagcaaa cgtaaaagtc atcgaagaca
     2041 ttccagcagt aaagggaacc tttaccaacg ctggtcagtt ccaagtcatc attggtaacg
     2101 atgtaccaat cttctacaat gactttacag ctgtgtctgg tatcgaaggc gtatcaaaag
     2161 aagctgctaa gtcagccgct aaaagtaacc aaaatgctat ccaacgtgtt atgactatgt
     2221 tggctgaaat cttcacacca atcattcctg cccttatcgt cggcggtttg attctcggtt
     2281 tccgtaacgt cttggaaggt gttcagatgg aatggcttgg acaagctatg aaagatgggc
     2341 agttggtctt cgatgctgat ggtaaccctg tatggaacac cattgttcag gtttctcctt
     2401 tctggaatgg tgtcaatcac ttcctctggt tgccaggtga agccatcttc cacttcctac
     2461 cagtaggtat cacttggtcc gtatctcgta aaatgggaac ttctcaaatc cttggtatcg
     2521 tccttggtat ctgtttggtt tctccacagt tgctcaacgc ttatgctgta cctggtacag
     2581 atgcagcaac cattgccagc gactggtctt ggaacttcgg tgcatttagt attgcccgta
     2641 tcggttatca agcacaagtt atccctgccc tccttgctgg tttggcactg tcttacctag
     2701 aaatcttctg gcgtaaagtg attccagaag tggtatctat gattttcgta ccattcctat
     2761 cacttcttcc tgccatcatc ttagctcaca ctgtccttgg tcctatcggt tggacaatcg
     2821 gtcaatggtt gtcaactgtc gtattggctg gtttgacagg cccattgaaa tggctcttcg
     2881 gtgctgtatt cggtgccctt tatgcaccat tcgttatcac tggtcttcac cacatgacaa
     2941 atgccatcga tacacaattg attgcggatg ctggtggaac tggtctctgg ccaatgattg
     3001 ctctttctaa cattgctcaa ggttctgcgg tatttgctta cttcctcatg aaccgtcaca
     3061 atgaaaaaga agcgcaagtt tcacttcctg caactatttc tgcttatctt ggtgttactg
     3121 aaccagccct ctttggtgtc aacgtgaaat acgtttaccc attcgtagcg gctatgatcg
     3181 gttcaagtat cgctggccta ctttctgtaa ccttcaacat ccaagctgct tctatcggta
     3241 tcggtggtct tccaggcatc ttgtctatca aggctgaata ctggggtcca ttcttgctag
     3301 caatggtagt tgcgattgtt gtcccaatga ttttgacagc tgttttcaaa cgtacaggtg
     3361 cattttcaaa aaaaagaaga aactgttgaa gaagttgtag ctccaactga agcagttgtt
     3421 gaagctggcg ctgctatcga attgattagc ccgcttactg gtcaagcaaa agaattgtca
     3481 caggcaactg accctgtatt tgcatcaggt gtcatgggac aaggtgtcct tatcgatcct
     3541 agcgaaggca tcttagttgc acctattgac ggtgaagtat ctgtcctctt ccctactaac
     3601 cacgctgttg gtatcactgc tacaaacgga gttgaactcc ttatgcacat cggtatggat
     3661 actgttggat tggaaggcaa aggtttcaca gcccatgtca aacaaggtga caaggtaaaa
     3721 gctggtgata aattgattag ctttgacatc gatgtcatca aggctgctgg tctcgtcgcg
     3781 gaaacaccag ttatcgtgac caaccaaact gactttgaca ctcaagttat cggaaatctt
     3841 cctcgtgcca tctcgcaagg cgaagctatt ctgacagtta caaagaatta atgttctagg
     3901 agggcgcaag gtaacttgca cctcctatca ttgcttatgc aagaaggaaa aatcaagaaa
     3961 gagagagcaa aatgacaata gacaaacgaa aggttgttta tcaaatctac ccaaaatctt
     4021 acaaggatac aactggaaat ggtgtagggg atttacgagg aattattgaa aaactacctt
     4081 atttgaagga gctaggcatt gatatgattt ggctcaaccc cttctaccca agtcctcaac
     4141 gagacaacgg ctatgacatt tcagactata cagccgtcaa tcctgatttt ggcaccatgg
     4201 ctgactttga agaaatggtg gctgtcggta aagagctggg catcgaattc atgctagaca
     4261 tggtcctcaa tcactgctca acggagcatg aatggttcca aaaagcccta gcaggcgaca
     4321 aatactacca agatttcttt atcctgcgtg accagccaac tgactgggtg tctaagtttg
     4381 gcggcaatgc ctgggctccc tttggagata ctgggaaata ctacctccac ctcttcgacg
     4441 tgacccaagc cgacctcaac tggcgaaatc ctcatgtccg tgaagaactg ttcaaggtgg
     4501 tcaacttctg gaaagacaag ggtgtcaagg gcttccgctt cgatgttatc aacctgattg
     4561 gtaaggacga agtcctcgaa gactgcccaa tcaatgacgg caagcctgct tacaccgacc
     4621 gcccgatcac ccacgaccac ctcatgatga tgaacaaagc tacttttggt agcgaaaaag
     4681 gcttcatgac cgtcggggaa atgtctgcca ccaccattga aaactgcatt ctctacacgg
     4741 ctcctgaacg ggaagaattg tccatggcct tcaacttcca ccacttgaaa gtggactaca
     4801 aggacgggca aaaatggacc attatggact ttgactttga ggaactcaaa cgcctcttcc
     4861 atacttgggg ggaagaaatg tccgtcggaa atggctggaa tgcccttttc tacaacaacc
     4921 acgaccaacc tcgtgccctc aaccgctttg tcgatgtgaa gaatttccgc aacgaaggag
     4981 caaccatgct ggcagcctct atccacctgt cacgcggcac gccttacatt tacatgggcg
     5041 aggaaatcgg catgattgac cccgactacg acagcatgga cgactatgtc gatgtcgagt
     5101 ctatcaatgc ctaccagatg ctcttggatc aaggccacac acctgagcaa gcctttaaga
     5161 ttatccaagc caagtcccgt gacaattccc gcaccccgat gcaatgggac gcttctgaca
     5221 atgcaggctt ctcaacagga actccttggc tgaaagctgg caaatcctat ccaaccatta
     5281 acgttgaaca ggaaaaaaca ggcccaatct ttaccttcta ccaagcactc atccgcctgc
     5341 ggaaagaact ccctctgatt tcagaagggg attacaaggc cgcctacaag gacagacaga
     5401 aagtctatgc ctttgagcgt ttactaaacg atgaaaaatt actggtccta aacaacttct
     5461 ttgcagaaga ggttgaacta gacctggcag acgaatatgc ccgtggtcaa gtcctcatca
     5521 gcaactatcc tgataacaaa ctcggtaaga aaattaccct caagccttat caagcactgg
     5581 cgattttggt taaataaacg ataaaacatc cgaaaataac actctacatg tcaattttaa
     5641 ttttcctaaa attagaacct gccttcacag ctcagtaggt tacttgtgaa ggcaagttct
     5701 tggtttaagg tttcttttag gaatatattt tataatgtag tttacgcacg aaacagctat
     5761 ctgggggggg agatagttgt ttct
//
LOCUS       DASFRC010000139         5775 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.139, whole genome shotgun sequence.
ACCESSION   DASFRC010000139 DASFRC010000000
VERSION     DASFRC010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5775)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5775)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5775
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.139"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            322..1884
                     /locus_tag="U1087_001785"
     CDS             322..1884
                     /locus_tag="U1087_001785"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEM4756233.1"
                     /translation="MRVIEFLDTTLRDGEQTPGVNFSIKEKVTIAKQLEKWGISAIEA
                     GFPAASPDSFEAVRQIAAAMTKTAVTGLARSVKSDIDACYEALKDAKYPQIHVFIATS
                     PIHREFKLQKTKEEILAQITEHVSYARERFEVVEFSPEDATRTELDYLLEVVQTAVDA
                     GATYINIPDTVGFTTPQHYGEIFRYLTTNVKSDREIIFSPHCHNDLGMAVANTLSAIK
                     NGAGRVEGTINGIGERAGNAALEEVAVALEIRKDFYDVTSPIVLKETLNTSELVSRFS
                     GIAIPSNKAVVGGNAFSHESGIHQDGVLKNPLTYEIITPELVGVKKNSLPLGKLSGRH
                     AFVEKLKELDLYFEEGDVASLFARFKKLADKKEKITDADIRALVAGTEISNRDGFQFK
                     DLRLDSQSDGSIQAQVIFINQDEEEVVVAETGKGSVEAVFNAIDQFFRQEISLERYHI
                     DAITDGIDAQARVLVAVENKATETIFNASGIDFDVVKASAIAYIHANVMVQKENSGQI
                     DKKLSEKDLPHI"
     gene            1893..2939
                     /gene="leuB"
                     /locus_tag="U1087_001786"
     CDS             1893..2939
                     /gene="leuB"
                     /locus_tag="U1087_001786"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HEM4756234.1"
                     /translation="MTKKIVALAGDGIGPEIMDAGLAVLEAVAGQVGFAYEIEERAFG
                     GAGIDAADHPLPDATLQACRQADAILLAAIGSPQYDNAAIRPEQGLLQLRKELGLFAN
                     IRPVKIFDSLKDYSPLKADRLDGVDLVMVRELTGGIYFGEHILETDQASDSNTYQAEE
                     IERVVRSAFDLAQKRRKKVTSIDKQNVLATSKLWRKVADEVAKDYPDVTLEHQLVDSA
                     AMLLITNPSRFDVLVTENLFGDILSDEASVLTGTLGVLPSASHAVAGPSLYEPIHGSA
                     PDIAGQGIANPVSMILSVAMMLEESFDLVQAGQTIRQAVEAVFAEGIFTKDLGGTAST
                     KEMTEAIIAQIGGG"
     gene            2942..4333
                     /gene="leuC"
                     /locus_tag="U1087_001787"
     CDS             2942..4333
                     /gene="leuC"
                     /locus_tag="U1087_001787"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEM4756235.1"
                     /translation="MSGKSIFDKLWDRHVITGQEGQPQLLYVDQHYIHEVTSPQAFQG
                     LRDTGRPVRRPDLTFATFDHNVPTVDIHNIRDVISKAQMDALAKNIEDFGIPHAAHGS
                     EHQGIVHMVGPETGRTQPGKFIVCGDSHTATHGAFGAIAFGIGTSEVEHVLATQTIWQ
                     VKPKRLLVEFVGQAQNGVYAKDFILALIARYGVDCGLGHVVEFAGPVIDRLSMEERMT
                     ICNMSIEFGSKMGILAPDQTTFDYLRGRECAPADFDAAVADWKELYSDADTVYDKHLV
                     LDVSDLAPMVTWGTTPAMGVSFDEIFPAIRDHNDERAYAYMDLAPGQKAADIPVGYVF
                     LGSCTNARLSDLQLAARIVKGRKIAEQVTAIVVPGSRPVKRAAEKLGLDKIFMEAGFE
                     WRDPGCSMCLGMNPDKVPAGVHCASTSNRNFEDRQGFGAKTHLCSPAMAAAAALYGHF
                     VDTRQLDILKEGV"
     gene            4333..4926
                     /gene="leuD"
                     /locus_tag="U1087_001788"
     CDS             4333..4926
                     /gene="leuD"
                     /locus_tag="U1087_001788"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018167039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEM4756236.1"
                     /translation="MHQFTIWTGTTVPLMNDNIDTDQLLPKQFLKLIDKKGFGKYLLY
                     AWRYLDDNYTDNPDFIINQPEYQGASILISGDNFGAGSSREHAAWALADYGFKVIIAG
                     SFGDIHYNNDLNNGILPIIQPKEVRDQLAQLGPDQEITVDLADQLIRTPFGEFPFDIE
                     QDWKHKLLNGLDDIGITLQYQDLITEYEGNRPSYWQE"
     gene            4989..5774
                     /locus_tag="U1087_001789"
     CDS             4989..5774
                     /locus_tag="U1087_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002276310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5/YciO/YrdC/YwlC family protein"
                     /protein_id="HEM4756237.1"
                     /translation="MTKQIHWDSALSQEGFDIIKGEGGVIVCPTKVGYIIMTADKAGL
                     ERKFDAKERKRNKPGVVLCGSMEELRELAQLTPEIDAFYQKHWDEDILLGCILPWKPE
                     AYAKLQAYGDGREELMTDVRGTSCFVIKFGVAGEQIAKEMWEKEGRMVYASSANPSGK
                     GNRGKVEGIGERIASKVDLIIEADDYVASIQPDKTIETRYEQGVMVSMVDKDGKLIPE
                     QGADSRSISPCPVVIRKGLDIDKIMMHLSDHFNSWDYRQGEYY"
BASE COUNT         1520 a         1217 c         1535 g         1503 t
ORIGIN      
        1 tgctgtattg ttcggatttt tcagaaaatt tccatttttc tgttgacaag tgaaaataag
       61 tagggtatca ttgtaaataa ttaaaatact gaaaggaaaa agtcaaatga aacctgtcac
      121 tacaaaattc tttgctttgt tgttgcgacg gtcgggctag tgcactaggt agcattagtc
      181 ctgtttggct taccaagcgg gcgctgttga caacatctcg cgggtaggag tcctcgaggt
      241 gttttctttt tcttagtata ctttgaaaac taagaaagag aacctaatat tgacgttagg
      301 gttatttaga aaggtattct tatgcgtgtg attgaatttt tagatacgac tttacgagat
      361 ggtgaacaga cgccaggtgt gaatttttct atcaaggaaa aagtgaccat cgccaagcag
      421 ttggaaaaat gggggatttc tgccattgaa gcgggtttcc cagcggccag tcctgattcg
      481 tttgaagcgg ttcgtcagat tgcggcagcg atgaccaaga cggctgtgac aggtttggca
      541 cggtcagtaa aatcagacat tgatgcttgt tatgaggctc tgaaagatgc taagtatccg
      601 cagattcacg ttttcattgc gaccagcccc attcaccgtg aatttaaact tcaaaagacc
      661 aaagaagaaa ttttggcgca aatcactgaa catgtcagct atgcacgtga gcgttttgag
      721 gtggtcgagt tctcgccaga ggatgcgaca cggacggagt tggattactt gctagaagtg
      781 gtgcagacag cggtagatgc tggtgcgacc tacatcaaca ttccagatac agtcggtttt
      841 acgactcctc agcactacgg agaaattttc cgttacttga caacaaacgt caaatcggac
      901 cgtgagatta ttttcagtcc gcattgccac aatgacctag gtatggcagt tgccaatacc
      961 ctttcagcta ttaaaaacgg tgcaggtcgt gtcgagggga ccatcaacgg tatcggtgag
     1021 cgagcaggga atgcggccct tgaagaagta gcagttgccc ttgaaattcg gaaagatttc
     1081 tacgatgtga ccagtccgat tgttctaaag gaaacgctca atacttcgga attggtctct
     1141 cgcttttctg ggattgccat tccaagcaat aaggcggttg tcggtggcaa tgccttctct
     1201 cacgagtcag gtattcacca agatggtgtc ttgaaaaatc cattaaccta tgaaatcatt
     1261 acacctgagt tggtaggggt caagaaaaat tctctgccac tgggtaaact atctggtcgc
     1321 cacgcttttg tagaaaagct gaaagagcta gacctgtatt ttgaagaagg agacgttgct
     1381 agcttgtttg ctcgtttcaa aaaactggca gacaagaagg aaaaaattac ggatgctgat
     1441 attcgagctc tagtagctgg gacagaaatc agcaatcgtg atggtttcca atttaaagat
     1501 ttacgtttag atagtcagtc tgacggcagc atccaggctc aggtcatctt catcaatcag
     1561 gatgaggaag aagtggttgt tgctgaaact ggtaagggtt cggttgaagc tgtctttaat
     1621 gccattgacc aattcttccg gcaggaaatc agcttggaac gttaccatat tgacgccatt
     1681 accgacggta tcgatgccca ggcgcgtgtg cttgtcgctg tagaaaacaa ggcaacggaa
     1741 acaatcttta atgcctctgg tattgacttt gacgtggtga aggcttctgc cattgcctat
     1801 atccatgcta atgtcatggt gcaaaaagaa aatagtggac agatagataa gaaactatca
     1861 gagaaagact tgccacacat ctaggaggga atatgacgaa aaaaattgta gccttggctg
     1921 gtgatggaat cggtcctgaa atcatggatg ctggcctagc agtcctcgag gctgttgctg
     1981 ggcaagtagg atttgcttat gagattgagg agagagcttt tggtggtgct ggtattgatg
     2041 cggctgacca tcctctacca gatgctacct tgcaggcttg ccgtcaggca gatgcgattt
     2101 tattggcagc aatcggtagc cctcaatatg acaatgcggc tatccgacca gaacaaggcc
     2161 tgcttcaact ccgtaaggaa ttgggtctat ttgccaatat tcgtccggtg aaaatttttg
     2221 atagcctgaa agactattct cccctgaaag ccgaccggct ggacggtgtg gatttggtca
     2281 tggtacggga gttgacaggc gggatttatt ttggggagca cattcttgag acagaccaag
     2341 ccagcgatag caatacctat caagctgagg aaatcgaacg agttgtccgc tctgcctttg
     2401 acctagccca aaaaagacga aaaaaagtca ccagcattga taaacaaaat gtactggcga
     2461 cgtcaaaatt atggcggaag gtggcggatg aagtggctaa ggactaccca gatgtgacct
     2521 tggagcacca gttggtggat agtgcagcca tgcttttgat taccaatcct agtcgatttg
     2581 acgtcttggt gacggaaaat cttttcggag atattttgtc ggatgaggcc agcgtattaa
     2641 cagggacgct aggggttctg ccttctgcta gtcatgcggt ggcaggtcct agtctttatg
     2701 aacctatcca tggttcggca ccggatattg caggtcaggg cattgccaac cctgtcagca
     2761 tgattctatc tgttgccatg atgctggaag aaagttttga tttggtccaa gcaggtcaga
     2821 ccattcgcca agccgttgaa gcggtctttg cagaaggcat tttcaccaag gatctgggtg
     2881 ggaccgcctc taccaaagaa atgactgagg ccattattgc ccagattgga ggtgggtaga
     2941 tatgagtggc aaatccattt tcgataagct ctgggatcgc catgtgatta cagggcagga
     3001 aggtcagccc cagctcctct atgtggacca gcactatatc catgaggtga ccagtcccca
     3061 ggcctttcaa ggactgaggg atacagggcg acctgttcgg cgtccagact tgacttttgc
     3121 gacttttgac cacaacgtac caaccgttga tattcacaat atccgtgatg tcatttccaa
     3181 ggctcagatg gatgccttgg cgaagaatat agaggatttc ggcattcccc acgcagccca
     3241 cggttcggaa catcagggga ttgtccacat ggttggacca gaaacaggta ggacacagcc
     3301 aggtaagttc attgtctgcg gagatagcca tacagcgact cacggagcat ttggagctat
     3361 cgcatttggg attggtactt ctgaagtaga gcacgttctc gctacccaga ccatttggca
     3421 ggttaaacct aagcgactcc tagtggaatt tgtcggtcag gctcaaaatg gtgtctatgc
     3481 caaggacttt attctggctc tgattgcccg atacggcgtg gattgtggct tagggcatgt
     3541 ggtggaattt gcagggccag tcatcgaccg actcagtatg gaggagcgga tgaccatttg
     3601 caatatgtcc attgagttcg gttctaagat gggcattctg gctcctgacc agaccacttt
     3661 tgactacctg cgaggtcggg agtgtgcacc agcggacttc gatgcggcgg tggcagactg
     3721 gaaggagctc tactcggatg cggacacggt ctatgacaag catctagtcc ttgatgtgtc
     3781 agacttggca cccatggtca cttgggggac cacacctgct atgggggtta gctttgacga
     3841 aatcttccca gccatccgtg accacaacga cgagcgggct tacgcttaca tggacttggc
     3901 tcctgggcaa aaggctgcgg acattcccgt tggctatgtc ttcctaggct cctgtaccaa
     3961 tgctcgcctc agcgatttgc agctggcagc tcggattgtt aaggggcgga aaatagcaga
     4021 gcaggttacg gctattgtcg tacccggcag tcgccctgtc aagcgtgctg cagaaaagtt
     4081 aggtctagac aagattttta tggaggctgg ttttgagtgg cgggatcccg gttgctccat
     4141 gtgtctgggc atgaatccag ataaggtgcc tgcaggtgtc cactgtgcct ccacaagtaa
     4201 tcggaacttt gaagaccgac agggctttgg ggccaagacc cacttgtgta gtcctgctat
     4261 ggctgccgca gctgcgcttt atggacactt tgtcgatacc cgacagctag acattctcaa
     4321 ggagggagtc taatgcacca atttaccata tggacaggga cgactgttcc gctcatgaat
     4381 gataatattg ataccgacca gctcttgccc aagcagtttc tcaaactgat tgacaaaaag
     4441 ggcttcggca agtatctgct ctatgcttgg cggtacttgg atgataacta cacggacaat
     4501 cctgatttca ttatcaatca gcctgagtat caaggcgcta gtatcctcat atctggggat
     4561 aacttcggag caggttcttc tagggaacac gctgcttggg ctctggcaga ttatggcttc
     4621 aaggtcatca ttgcaggctc ctttggggat attcattaca acaatgactt aaataacggg
     4681 atattaccta ttatccagcc caaagaagtc agggatcaac tagctcagct gggtcctgac
     4741 caagaaatca cggttgactt ggcagatcag ttgatacgga cgccttttgg ggaattccca
     4801 tttgacatcg aacaggactg gaaacacaag ttgctcaatg gcttagacga tatcggtatt
     4861 accttacaat atcaggattt gattactgag tatgagggga atcgcccaag ctactggcaa
     4921 gaataaaata aagattagaa aacaagcaga ttgctctgct atggaacaaa agaaaagagg
     4981 aaactattat gacgaaacaa attcactggg atagcgcact ttcacaagaa ggatttgaca
     5041 ttatcaaggg ggagggaggc gtgattgtct gcccgacgaa ggttggttac atcatcatga
     5101 ctgctgacaa ggctggcttg gagcgtaagt ttgacgctaa agagcgtaag cgtaataagc
     5161 cgggcgtggt cctttgtgga agcatggagg agcttcgtga gttggctcag ttgactcctg
     5221 agattgatgc cttctaccaa aaacattggg atgaggacat tttgttgggt tgtatcctgc
     5281 cttggaaacc agaggcttat gctaagttgc aggcttatgg cgatggtcgt gaagagttga
     5341 tgaccgacgt tcgtggcact tcttgctttg ttatcaagtt tggtgtagca ggcgagcaga
     5401 ttgccaagga aatgtgggaa aaagaaggcc gtatggtcta cgcttcatct gctaacccgt
     5461 caggtaaggg aaatcgtggc aaggtagaag gtatcggtga gcgtatcgct tctaaggtgg
     5521 atttgattat cgaggcggat gactatgtgg catctatcca gccagacaag accattgaaa
     5581 cccgctatga gcaaggggtt atggtgtcta tggtagacaa agatggtaaa ctcattccag
     5641 aacaaggcgc ggatagtcgt tctatcagcc cgtgcccagt tgtcatccgt aagggtctgg
     5701 acatcgataa aatcatgatg cacctgtctg accatttcaa ctcttgggac tacagacaag
     5761 gggaatatta ctaag
//
LOCUS       DASFRC010000140         5742 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.140, whole genome shotgun sequence.
ACCESSION   DASFRC010000140 DASFRC010000000
VERSION     DASFRC010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5742)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5742)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5742
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.140"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(96..605)
                     /locus_tag="U1087_001790"
     CDS             complement(96..605)
                     /locus_tag="U1087_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HEM4756238.1"
                     /translation="MERVKRKESLFVESVVEALWELLEDKSFEKISVSELVERAGIGR
                     VTFYRNFSNKEEVLERSFNLELQAWLTERQIDLSDWSDAHLLLALRQFFDFWYEQQDK
                     IRLLTANHLDYLLEEVLDRYFKERLGDMTDDFHLQFIVGGFFRVLKTWVARGCKESPD
                     DIMRLMGEQ"
     gene            749..1498
                     /locus_tag="U1087_001791"
                     /pseudo
     CDS             749..1498
                     /locus_tag="U1087_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646452.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pectin acetylesterase"
     gene            complement(1512..2562)
                     /locus_tag="U1087_001792"
     CDS             complement(join(1512..2120,2122..2562))
                     /locus_tag="U1087_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612110.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HEM4756239.1"
                     /translation="MRNLFTRDNLKELKAALKNQAYAPYHRRLQAILLRSEGFSFQKI
                     SDLTGYVPQTVKNQVDKYFKEGLSAVVTETRGGRHRSYLTVEEEQAFFKKILDSSIDA
                     GEMVTTTSLFDAYQEEIGQEVPRQTFYALLKRHGWRKVTPRPEHPRKQMLKQLLRLKI
                     KYTFRTAGKRFKHSRRYNKVRLMYQDEAGFGRISKQGKCWAPQGTRPVVHSRHIREYR
                     YCYGAVDAHTGESFFLIAGACNTAWMNEFLKQLSLIYADDYIVLVMDNAIWHKSRALE
                     VPPNIEFAFIPPYTPEMNPIEQVWAEIRKRGFKNKAFKTLEEVIDKLQEVILSLHWSV
                     LKSIVNRRWTRDVYF"
     gene            2602..2973
                     /locus_tag="U1087_001793"
                     /pseudo
     CDS             2602..2973
                     /locus_tag="U1087_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730134.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pectin acetylesterase"
     gene            2983..4002
                     /locus_tag="U1087_001794"
     CDS             2983..4002
                     /locus_tag="U1087_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM4756240.1"
                     /translation="MKKFKKIILWILGIVASLGIIAYVSVTNHPQLMVGVIQSFMYKE
                     SSPNSYSPLYAPIDGLKENGQYLKSEIAYSKDYPNSFLDITYPDQNFEVDRPILFYFH
                     GGGFFGGSKNMGDPLAASQATYLIDDIVSKGYNVVNVDYALVPDYHFPTPVIQMNQAI
                     AYMKEHAEEYHLNMDNVVLMGSSAGAIMVAQYGSVLANQEYAQLLNIEPSIAKEHVKA
                     LVIDDAPLDYANFSLSTKILVGNYVSETIYLSEEEINDYNPISHVNKDYPASFLLGSE
                     YRTDMVSLNKALKQAGVENELVDPLAEEGLEKPHGFVANLRTDPVSAKAFERLITFIN
                     DRTKE"
     gene            4224..5507
                     /locus_tag="U1087_001795"
     CDS             4224..5507
                     /locus_tag="U1087_001795"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016466710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HEM4756241.1"
                     /translation="MSVSFEAKETNRGVLTFTIGQDAIKPELDRVFNKVKKDINLPGF
                     RKGHLPRAVFNQKFGEEALYQDVVNALLPAAYEAAVTEAGLEVVAQPKIDVVSMEKGQ
                     DWTITAEVVTKPEVKLGDYKNLAVSVEATKEVTDEEVDAKIEAARNNLAELVIKEGPA
                     AEGDTVVIDFVGSIDGVEFDGGKGENFSLGLGSGQFIPGFEDQLVGHAAGEEVNVEVT
                     FPEDYQVADLAGKPALFVTKIHEVKAKEVPALDDELAKDIDEEVETLDELKAKYRKEL
                     EASKEVAFDDAVESAALELAVENAEIVELPEEMIHEEVHRAINEFLGGMQQQGISPDM
                     YFQITGTTRDDLHKQYEADAEKRTKTNLVVEAVAKAEGFEATEEEINREIEDLAATYN
                     MEVAQVRSLLSPEMLKHDIAVKKAVEVITSTVTVK"
BASE COUNT         1756 a         1163 c         1220 g         1603 t
ORIGIN      
        1 cctcactata cacaaaaaga cttagagtga ctgaaaaaca gttgtctaag tctttttgct
       61 tgcttgggct ggtcaagaat gttgataagc ttgccctatt gctctcccat caaccgcatg
      121 atgtcatcag ggctttcctt acagcctcta gcaacccagg ttttcagcac tcggaaaaat
      181 cctcccacaa taaattgcag gtgaaaatca tcggtcatgt cccccagtct ttctttgaaa
      241 tagcgatcca agacctcctc gagcaagtag tccaaatggt tggctgtcaa taagcgaatc
      301 ttatcctgtt gctcatacca aaagtcaaaa aattgccgta aagctagtaa gaggtgagca
      361 tctgaccaat ccgacaagtc aatctgccgc tcggtcaacc aggcttgcaa ttccaagttg
      421 aaggaccgtt cgagaacctc ttccttatta gaaaagttcc tataaaaagt cactcgaccg
      481 ataccggctc gctccaccaa ctcagacaca ctaatctttt caaaggattt gtcttctagc
      541 aactcccaca gagcctccac gacactctcc acaaataacg actctttccg cttcactctt
      601 tccatgcgaa acgcttcctt tcctttgttt ccttttgggc aaatagcaga gctgggacta
      661 gttttcccac tgttcatctg ctatactaat aaaaaaacga aacacctgtt tctaaaaaat
      721 ataccataaa ggacagaaaa aagaaagtat gaaaaaagtt tggaaaatag tatcagctgt
      781 agtagtcgcc ttagctttgc ttggttttat tgcctataaa atgacctttg gttggtccgc
      841 tccagagctt gttcatcaaa ccccacaagt gaatgaatgg caccgcctca gtcccgaagg
      901 ggttgtagat tctcagggca atcaggcaca cggcctgctt cgtatcggta aagagaagaa
      961 taaggtgatg gtctatttct ttggtggtgg tgtgagtatc aatgaagaga ctgctagtgg
     1021 tggcacacgc tattttgcga ccacaactgg ccatcaagat tatgtcgcaa cttggggaat
     1081 tggaagtccg caggaagaca atccatttaa ggactggact atgattgtgc ttccgtatgg
     1141 gacaggagat tttcatgctg gcacacagaa ttttacttac gtagatgata aaggtaagga
     1201 acaaacgatt tatcatcagg gttataataa tttgtcaagt atattagcag cagctaaacc
     1261 gcacgttggc aatcccgata cacttctggt gactggattt tcagctggcg gatttgcgac
     1321 ctcactgcta gcggatgatg tcatttctca ttttccaaca gcgaaaaatg tcacagttgc
     1381 agtggacagt tcctttttga gacatgataa ctggaaaagt attgcggaaa atgtctggaa
     1441 aacgccgact tctattagtg accgcctgca ttcagataat attgttttag atagcttata
     1501 ctaattaaaa atcaaaaata gacatcccta gtccatcgtc tattaacaat agactttaat
     1561 accgaccaat gcaaactaag tatgacttcc tgtagcttat caatcacctc ttctaatgtc
     1621 ttgaaagcct tgtttttaaa tccacgtttg cgaatttcag cccagacttg ctcaatggga
     1681 ttcatctcgg gagtatacgg agggataaaa gcgaattcga tattcggtgg aacttctaac
     1741 gctctagact tgtgccaaat agcgttgtcc attactaaaa caatatagtc atcagcataa
     1801 attaaagaaa gttgctttag gaactcattc atccaggctg tattgcaggc gccagcaatt
     1861 aaaaagaaag attcgccagt atgagcatcc acggcaccat aacaatatcg gtattctctg
     1921 atatggcgac tgtgtacgac aggacgagtt ccttgtggag cccagcattt cccctgcttg
     1981 ctaatccgtc caaaccctgc ttcgtcctga tacatcagtc ttactttatt atagcgacgg
     2041 ctgtgtttga agcgctttcc tgctgtcctg aatgtatatt ttatttttag acgcaacaat
     2101 tgtttgagca tctgctttct gtggatgttc tggacgtgga gtcactttac gccaaccatg
     2161 gcgcttaaga agggcataaa aggtttgacg tggcacttct tgaccaattt cctcttgata
     2221 tgcatcaaag agcgaggtag tcgtcaccat ctccccagcg tctattgaac tgtctagaat
     2281 tttcttgaaa aaagcctgtt cttcttccac agttagataa ctacggtgtc tcccacctcg
     2341 agtttctgtg acaacagcag ataacccctc tttgaaatac ttatcgacct gattttttac
     2401 agtctggggt acatatcctg ttaaatcgct aattttttga aaggaaaaac cttctgaacg
     2461 taaaagaatg gcttgaagcc gacgatgata cggcgcataa gcttgatttt ttagggctgc
     2521 ttttaactct tttaggttat ctcgtgtaaa taagtttctc atgattctat tatatcatct
     2581 atttttggtt ttgtgtaagt attagtagcc ctccatgaga aacgcgggga tagtgttaag
     2641 atattgtttg atatttccta tcgagatgga attcttcagc aatatcaagc ctatattgac
     2701 caagggaaac tagcagatgc aacagaagag agcagtgagc actttcaaaa agaacttaaa
     2761 aaaatgattc aagaactaca atctcagatt gatggcgtgg gtatttttgt ctggaattac
     2821 gggcaagatg aaaaaactac cgctactcag cacaccacca ttaacttctc aacattcttt
     2881 acccctatgt ctcaagacaa gagtgtggca gaatggctgg atgatgcggt taacggagag
     2941 gtaaagagtt acgggttaga actattagat taggagaata gcttgaaaaa atttaaaaaa
     3001 atcatcttat ggatccttgg gattgtagct agtctcggta tcattgctta tgtgtcggtt
     3061 accaatcatc cgcagttgat ggtcggtgtc attcaatcgt ttatgtacaa ggaaagttca
     3121 ccgaactctt acagtcctct ttatgccccc attgatggtc tgaaagagaa tggtcagtat
     3181 ttgaaaagtg agattgccta tagcaaggac tatcctaaca gctttttaga tattacctat
     3241 ccagaccaaa attttgaagt tgaccgtcca atcctcttct atttccacgg tggtggattc
     3301 tttggaggga gtaaaaatat gggtgaccca ctggctgcca gccaagcgac ctatctcatt
     3361 gacgatatcg tgtcaaaagg ttacaacgtt gttaatgttg actacgcttt ggtgcccgat
     3421 taccattttc caacacctgt gattcaaatg aatcaggcta tcgcctacat gaaggaacat
     3481 gccgaagaat atcacttgaa catggataat gttgtcttga tgggttcatc agcgggtgcc
     3541 atcatggttg ctcaatatgg tagtgtctta gccaatcagg agtacgctca gctattgaac
     3601 attgaaccaa gtattgcaaa agaacatgtc aaggctctgg ttatcgacga tgctccctta
     3661 gattatgcca attttagctt aagcacgaag attttggttg gaaattatgt ttcagaaacc
     3721 atttatctaa gtgaggaaga aatcaatgac tataacccga tttcccatgt gaacaaggac
     3781 tacccagcta gtttccttct gggaagcgag tatcggacag atatggtgtc gctcaataag
     3841 gccttgaagc aagcgggagt tgaaaatgaa ttggtcgatc ctttggcaga agaagggctt
     3901 gaaaagccac atggttttgt ggcgaatttg cgaacagacc ctgtgtctgc caaagcattt
     3961 gaacggttga ttacttttat aaacgataga accaaggaat agtcggagta ttgataagtt
     4021 ggaaactgat ggggatttgt ccaatcaatc tgccgctctg acaaccatgt ttgtactcag
     4081 aaagtctacg ccgaaaaatt ccaaatgaga acaataagtc ccagctctgc catttcccaa
     4141 aagtccgtta taaaatcgtt gaaatccttg tcaattgtgt tataatgaag agtatgcaat
     4201 aaaattttaa ggagaatgac agaatgtctg tatcatttga agcaaaagaa acaaaccgcg
     4261 gcgttttgac tttcacaatc ggtcaagatg ccatcaaacc agaattggac cgcgttttca
     4321 acaaagttaa gaaagatatc aatcttccag gtttccgtaa aggtcacttg ccacgtgccg
     4381 ttttcaacca aaaatttggt gaagaagcac tttatcaaga tgttgtaaat gcattgttac
     4441 cagcagctta tgaagcagcg gttacagaag ctggtcttga agtagttgca caaccaaaaa
     4501 tcgacgttgt gtctatggaa aaaggtcaag actggacaat cactgcggaa gttgtgacaa
     4561 aacctgaagt aaaattgggt gactacaaaa acttggcagt ttcagtagaa gctactaaag
     4621 aagtaacaga tgaagaagtt gatgcaaaaa tcgaagctgc acgcaacaac ttggctgaat
     4681 tggttatcaa agaaggacca gcagctgaag gcgacacagt tgttatcgac tttgtaggtt
     4741 caatcgacgg cgttgaattt gacggcggta aaggtgagaa cttctcactt ggacttggtt
     4801 caggtcaatt catcccaggt tttgaagacc aattggtagg tcacgcagct ggtgaagaag
     4861 tgaacgttga agtgactttc ccagaagact accaagtagc tgaccttgct ggtaaaccag
     4921 ctctcttcgt gacaaaaatc cacgaagtaa aagcaaaaga agtaccagct ttggatgacg
     4981 aattggcaaa agacatcgac gaagaagtag aaacacttga tgagttgaaa gctaaatacc
     5041 gcaaagaatt ggaagcatca aaagaagttg cctttgacga tgcagttgaa tcagcagctc
     5101 ttgaattagc tgtagaaaac gctgaaatcg ttgaattgcc agaagaaatg atccacgaag
     5161 aagttcaccg tgcaatcaat gaattcttgg gtggtatgca acaacaaggt atctcaccag
     5221 atatgtactt ccaaatcact ggtacaactc gtgatgacct tcataaacaa tacgaagcgg
     5281 atgctgaaaa acgtactaag actaacttgg ttgttgaagc agtagcgaaa gcagaaggtt
     5341 tcgaagcaac tgaagaggaa atcaacagag aaatcgaaga cttggcagca acttacaaca
     5401 tggaagtggc acaagttcgt agcttgcttt caccagaaat gcttaaacac gacatcgctg
     5461 tgaagaaagc tgtagaagtg atcacaagca ctgtaactgt aaaataacta tttggacaac
     5521 tcgactctag tcgggttttt tgtttaatca tctttttaat gcgatgtgct gagatgttga
     5581 cacgaactct gagaagcgaa gtcggacttt ttgcctaact tcgttgtaat cgtttttctt
     5641 ttgtttgttt ttgctttgag aaggggcaag taatggtttg taaaaccacg ccaaacgcat
     5701 gaagaaaaaa tcgttttcag aaaacgaaaa tcataaccaa ac
//
LOCUS       DASFRC010000141         5710 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.141, whole genome shotgun sequence.
ACCESSION   DASFRC010000141 DASFRC010000000
VERSION     DASFRC010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5710)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5710)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5710
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.141"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(32..1654)
                     /locus_tag="U1087_001796"
     CDS             complement(32..1654)
                     /locus_tag="U1087_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM4756242.1"
                     /translation="MLTVSDVSLRFSDRKLFDDVNIKFTAGNTYGLIGANGAGKSTFL
                     KILAGDIEPSTGHISLGPDERLSVLRQNHFDYEDERVIDVVIMGNEQLYSIMKEKDAI
                     YMKEDFSDEDGVRAAELEGEFAELGGWEAESEASQLLQNLNISEDLHYQNMSELTNGE
                     KVKVLLAKALFGKPDVLLLDEPTNGLDIQSINWLEDFLIDFENTVIVVSHDRHFLNKV
                     CTHMADLDFGKIKIFVGNYDFWKQSSELAAKLQADRNAKAEEKIKELQEFVARFSANA
                     SKSKQATSRKKMLDKIELEEIIPSSRKYPFINFKSEREIGNDLLTVENLKVVIDGETI
                     LDNISFILRPGDKTALIGQNDIQTTALIRALMGDIEYEGTVKWGVTTSQSYLPKDNTR
                     DFDTNESILDWLRQFASKEEDDNTFLRGFLGRMLFSGDEVNKPVNVLSGGEKVRVMLS
                     KLMLLKSNVLVLDDPTNHLDLESISSLNDGLKAFKESIIFASHDHEFIQTLANHIIVI
                     SKNGVIDRIDETYDEFLENAEVQAKVQELWKA"
     gene            complement(1719..2591)
                     /locus_tag="U1087_001797"
     CDS             complement(1719..2591)
                     /locus_tag="U1087_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEM4756243.1"
                     /translation="MKERIKDFISVTLGSIVMAIGFNSFFLENNIVSGGVGGLAIALN
                     ALLGWSPSDFVLYCNIPLLIICWFFLGKSVFIKTVYGAIIYPLCIKLTAGLPNLTENP
                     LLAAIFGGIILGFGLGLVFLGNSSTGGTGILIQFIHKYTPLSLGLTMAIIDGIIVGLG
                     FVAFDTDTVMYSIIALMTITYIVNRMMSGSQSSRNVMIISQKSEEIKNYITKVADRGV
                     TELPIIGGFTGVDKRMLMTTISIPEMQKLESAILDIDETAFMVVMPASQVRGRGFSLQ
                     KDHKHYDEDILIPM"
     misc_binding    2693..2899
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            2946..3971
                     /gene="trpS"
                     /locus_tag="U1087_001798"
     CDS             2946..3971
                     /gene="trpS"
                     /locus_tag="U1087_001798"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HEM4756244.1"
                     /translation="MSKPIILTGDRPTGKLHIGHYVGSLKNRVLLQDAGQHELFVFLA
                     DQQALTDHAKEPQKIVESVGNVALDYLAAGLDPAKTTIFIQSQIPELAELTMYYMNLV
                     SVARLERNPTVKTEIAQKGFGEGIPAGFLVYPVSQAADITAFKANFVPVGNDQKPMIE
                     QTREIVRSFNHAYQTDILVEPEGIYPENEAAGRLPGLDGNAKMSKSLGNGIYLADDMD
                     TLKKKVMSMYTDPNHIRVEDPGKIEGNMVFHYLDVFGREEDKAEIEAMKEHYQRGGLG
                     DVKTKRYLLDILERELGPIRERRIEFAQDMGQVYAMLEAGSQKARQVAATTLDQVKSA
                     MGINYFK"
     gene            4203..5684
                     /gene="guaB"
                     /locus_tag="U1087_001799"
     CDS             4203..5684
                     /gene="guaB"
                     /locus_tag="U1087_001799"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003090086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEM4756245.1"
                     /translation="MSNWDTKFLKKGFTFDDVLLIPAESHVLPHDIDLKTQLAPNLTL
                     NLPIISAAMDTVTDSKMAIAMARAGGLGVIHKNMSIAEQADEVRKVKRSENGVIIDPF
                     FLTPEHTIAEAEKLMATYRISGVPIVETLENRKLVGIITNRDMRFISDYSQPISTNMT
                     SDALVTAPVGTDLATAEAILHKHRIEKLPLVDENGRLSGLITIKDIEKVIEFPNAAKD
                     EFGRLLVAGAVGVTSDTFERAEALFEAGADAIVIDTAHGHSAGVLRKIKEIREHFPTR
                     TLIAGNIATAEGARALYEAGVDVVKVGIGPGSICTTRVIAGVGVPQVTAIYDAAGVAR
                     EYGKTIIADGGIKYSGDIVKALAAGGHAVMLGSMFAGTDEAPGETEIFQGRKFKTYRG
                     MGSIAAMKQGSKDRYFQASVNEANKLVPEGIEGRVAYKGSVADMIFQMVGGLRSGMGY
                     VGAGNLTELHENAQFIEMSGAGLKESHPHDVQITNEAPNYSVQ"
BASE COUNT         1713 a         1081 c         1246 g         1670 t
ORIGIN      
        1 gaggctgggc aaaagtccca gcctcttttt attatgcttt ccaaagttct tgtacttttg
       61 cttgtacttc agcattttcc aagaattcat cataagtttc gtcgattcgg tcgataacac
      121 cgtttttaga aatgacgatg atatggtttg ctaaagtttg aataaattcg tggtcatggc
      181 tggcaaagat gatggactct ttaaaagctt tcaaaccatc gttcagactg gaaattgatt
      241 ccaagtccaa gtggttggtt ggatcatcta agaccaagac atttgacttg aggagcatga
      301 gttttgacaa catcacgcgc actttttcgc cccctgacaa gacgtttaca ggtttgttaa
      361 cctcatcacc cgagaagagc atacgtccca agaaaccgcg caagaaggta ttgtcatctt
      421 cttccttgct ggcaaattga cggagccaat caaggataga ttcgtttgta tcaaagtcac
      481 gagtattgtc ttttggtaag taggattgac tagtagtgac accccacttg acagtacctt
      541 catattcaat atcgcccata agagcacgaa tgagagcagt tgtttggatg tcgttttgac
      601 caataagagc agtcttgtca cctgggcgca ggataaagct gatattgtca agaatcgttt
      661 caccatcaat aacaactttc aagttttcaa ctgttaagag gtcattaccg atttcacgtt
      721 ctgatttgaa gttgataaat ggatacttac ggctagaagg aatgatttct tccaactcga
      781 ttttgtccaa cattttctta cgtgaagtag cttgcttaga cttagaagca ttagcagaga
      841 aacgggcaac gaattcttgt agttctttga ttttttcttc tgcttttgca ttacggtcag
      901 cttgtagttt agctgctagt tcgctagatt gtttccagaa gtcatagtta ccaacgaaaa
      961 tcttgatttt accgaagtca aggtcggcca tatgggtaca tactttgttt aagaagtggc
     1021 ggtcgtgtga cacgacgata accgtatttt caaagtcaat caagaaatct tcgagccagt
     1081 tgatagattg gatgtccaga ccgttggttg gctcgtccaa aagaagaaca tctggtttac
     1141 caaaaagtgc cttagccaag aggaccttaa ccttctcacc gttggtcaat tcgctcatgt
     1201 tttggtagtg gaggtcttct gaaatgttga ggttttggag caattgagaa gcttcacttt
     1261 cagcttccca gccaccaagt tcagcaaact caccttctaa ttcagcagca cgaacaccat
     1321 cttcatcaga aaaatcttcc ttcatgtaaa tagcatcttt ttctttcatg atgctgtaaa
     1381 gttgctcatt ccccatgata actacgtcaa tgacgcgttc gtcttcatag tcgaaatggt
     1441 tctgacgtag tacagaaagg cgttcgtctg gtccaagtga aatatgacct gttgatggct
     1501 cgatgtcacc agcaagaatt ttcaaaaatg tagatttacc ggccccgttt gcaccaatca
     1561 aaccgtaggt atttcctgct gtaaatttga tattgacatc gtcaaataat ttgcgatcgc
     1621 taaagcgaag cgacacgtct gatactgtaa gcatagtttc tcctctattt ctgtctatta
     1681 gttttattgt actagaaaga acttgaattt tcaatgaatt acattggaat caaaatatct
     1741 tcatcataat gtttatggtc tttttgaaga ctgaagccac gaccacgaac ttggctggca
     1801 ggcatgacta ccataaaagc tgtttcatcg atatctagaa tagcagattc cagtttttgc
     1861 atttcaggaa tagagatagt agtcatcaac atacgcttgt caacccctgt aaagccaccg
     1921 attattggaa gttcagtcac tccgcgatca gcaactttag tgatatagtt tttgatttct
     1981 tctgattttt gagaaataat catgacattt cgagacgatt gggaaccaga catcatgcgg
     2041 ttgacaatat aagtaatggt cattagggca ataattgagt acataactgt atcagtatcg
     2101 aaggcaacaa atccaagtcc aacgataatg ccatcaataa tagccattgt cagacctaat
     2161 gataaagggg tgtacttgtg aataaattga ataagaatac ctgttccacc agtagaagaa
     2221 tttccaagga agacaagccc aagtccaaaa cctaggataa ttccaccgaa aatagcagct
     2281 aggagaggat tttctgtcaa gttgggtaaa cctgctgtca acttgatgca aagagggtag
     2341 ataatagctc catagacagt tttgataaat acagattttc ctaagaaaaa ccaacagatg
     2401 attaataaag ggatgttaca gtagaggaca aaatcagacg gactccaccc cagaagagca
     2461 ttgagtgcga ttgctaaacc tccgacacca ccagatacga tattattctc tagaaaaaaa
     2521 ctgttaaatc caatggccat gacaattgat ccgagtgtga cagagataaa gtcctttata
     2581 cgttctttca tatattctcc ttggttagtg ttataaaagc aatttctatt atccctaatt
     2641 tagacagtat cgtcaaggct ttgtcagctt gactttctaa ttttttgcgg ttataatagg
     2701 aatcaatcag aagagtagta agtggataat ttttagagag tttgtggttg gtgtgaacaa
     2761 acaagagtcg cttatgaatg gactgagtga atagaatctg aataaataag gattcggcta
     2821 gcaggcctta tgtgcaaaaa gatgtaagct tatttaatgc ttataagtga ggtggcaccg
     2881 tgtccttgac gccctcgcac agttttctgt gcgtgggctt ttattatgta aaaggagaac
     2941 attttatgag taaaccgatt atcctaacag gagaccgtcc aacaggcaaa ttacatattg
     3001 gacattatgt tggttcgttg aaaaatcgtg ttttattaca ggatgcaggt caacatgaac
     3061 tttttgtctt tttagcagac caacaagcgt tgacagatca tgcaaaggaa ccgcaaaaga
     3121 ttgttgaatc cgttggaaac gtagcactag attatctagc ggcaggactt gatccagcta
     3181 agacaacgat tttcatccag agtcaaattc ctgaattggc agagttgacc atgtactaca
     3241 tgaacttggt atctgttgca cgtctagaac gcaatccgac tgtaaaaacc gagattgctc
     3301 agaagggatt tggcgaagga attccagctg gtttcttggt ctatcctgtg tcacaagcgg
     3361 cggatattac agccttcaag gcaaactttg ttccagtagg aaatgaccag aaacctatga
     3421 ttgagcagac tcgtgaaatc gttcgtagct ttaaccatgc ttaccagact gatattttgg
     3481 tagagccgga gggcatttat cctgaaaatg aggcagctgg tcgcttgcca ggtttggacg
     3541 gcaatgccaa gatgtctaag tcacttggaa atggtattta tctggcagat gacatggata
     3601 cactcaagaa gaaagtcatg tccatgtaca ctgatcccaa ccacatccgt gttgaagacc
     3661 caggtaagat tgaaggaaac atggttttcc actatcttga cgtttttggt cgcgaagaag
     3721 ataaggctga gattgaggct atgaaggagc actatcaacg tggtggtttg ggcgatgtga
     3781 agaccaaacg ttatttgctg gacattttag agagagaatt aggaccaatc cgtgagcgtc
     3841 gtatcgaatt tgcacaggat atgggacagg tctatgcaat gttggaggca ggtagccaaa
     3901 aagctcgcca agttgctgcg acaactcttg accaagtgaa atctgctatg ggaattaact
     3961 attttaaata aggttaacaa tgaaagagca atgttgagaa aatgttgctt ttttcattta
     4021 ttttacgacg tagcaaaaaa caaacgttcg aattttatat ataaaactga atagaatttt
     4081 ctgaattttt agtaatgatg atattaaagc gaataatgat tgacaaatga tttcaaaatg
     4141 ttatcataat taaaatacaa atagcaatca tgctacatat taaataagaa aagaggaaga
     4201 aaatgtcaaa ctgggacact aaatttttga aaaaaggctt tactttcgac gatgtattac
     4261 ttattccggc tgaaagtcat gtattaccac atgatattga tttaaaaaca caattagcac
     4321 caaatttgac ccttaatctt ccgattattt ctgctgctat ggatacagta acagatagca
     4381 aaatggctat cgctatggcg cgtgcgggtg gtttgggcgt catccataag aacatgtcta
     4441 tcgcggagca ggctgatgag gtgcgcaagg taaaacgttc tgaaaatgga gtcattatcg
     4501 atccattctt cttaacacca gaacacacca ttgctgaagc tgagaaattg atggctactt
     4561 atcgtatttc cggtgtgcca atcgttgaaa cattagaaaa tcgtaagttg gtcggtatta
     4621 tcaccaatcg cgatatgcgt ttcatttcag attactcaca gccaatttcg accaacatga
     4681 ccagcgatgc tttggtaaca gcgccagttg gaacagatct tgcgactgcg gaggctattc
     4741 ttcacaagca tcgtattgaa aaattgccat tggttgatga aaatggtcgt ttgtcaggct
     4801 tgattactat caaagatatt gagaaagtga ttgagttccc aaatgctgcg aaggatgaat
     4861 ttggtcgtct cttggttgcg ggtgctgttg gtgttacatc tgatactttt gaacgtgcag
     4921 aagctctctt tgaagcaggt gcagatgcga ttgtcatcga tacagctcat ggtcattcag
     4981 ctggtgtttt gcgtaagatc aaagaaatcc gcgaacactt cccaactcgt accttgattg
     5041 ccggcaacat tgccacagct gaaggagctc gcgctcttta tgaagctggt gttgatgttg
     5101 tgaaggtcgg tattggaccg ggttcaatct gtacaacacg tgtcatcgca ggtgtcggtg
     5161 taccacaagt gacagctatc tatgatgccg ctggtgttgc gcgtgaatat ggtaaaacga
     5221 ttatcgctga tggtggtatc aagtattcag gagatattgt caaggcactt gccgctggtg
     5281 gtcatgccgt tatgcttggt tctatgtttg caggaactga tgaagcacca ggtgagacag
     5341 aaatcttcca aggtcgtaag ttcaagacct atcgtggtat gggctctatc gctgccatga
     5401 aacaaggttc aaaagaccgt tacttccaag catctgtcaa tgaagccaac aaacttgttc
     5461 cagaaggaat tgaaggacgt gtagcctata aaggttctgt tgcagatatg attttccaaa
     5521 tggttggtgg acttcgctca ggtatgggct atgtaggtgc tggtaacttg actgaattgc
     5581 atgaaaatgc acaattcatc gaaatgtcag gtgctggttt gaaagaaagc catccacacg
     5641 atgttcaaat cacaaacgaa gctccaaact attcagttca gtaaaacaaa aacaagaccc
     5701 tcttggcagg
//
LOCUS       DASFRC010000142         5635 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.142, whole genome shotgun sequence.
ACCESSION   DASFRC010000142 DASFRC010000000
VERSION     DASFRC010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5635)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5635)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5635
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.142"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            191..1540
                     /locus_tag="U1087_001800"
     CDS             191..1540
                     /locus_tag="U1087_001800"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000862950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HEM4756246.1"
                     /translation="MKMIDIVKNKKVLVLGLAKSGESAARLLDKLSAIVTVNDGKPFE
                     ENPTAQSLLEDGIRVICGSHPLELLDEDFALMVKNPGIRYDNPMVEKAIGKGIPVWTE
                     VELAYLVSDAPIVGITGSNGKTTTTTMIAEVLNAGNKPAKLCGNIGYPASSVAQTATA
                     EDTLVMELSSFQLMGTESFRPHIAVVTNLIASHIDYHGTFEDYVAAKWMIQGQMAAED
                     FVVLNFNQKEAKELAGQTKATVVPFSTLEVVDGAYLADEKLYFKGEYIMDADQIGVPG
                     SHNVENALATIVVAKLLGVDHQAIQESLSAFGGVKHRLQFVGEVNEVSFYNDSKSTNI
                     LATQKALSGFDNSKVILIAGGLDRGNEFDELVPDLVGLKKMVLLGQSAPRVQRAADKA
                     EVGTIEALDIADATRKAFAIAEKGDIVLLSPANASWDMYANFEVRGDVFLQTFEELK"
     gene            1543..2607
                     /locus_tag="U1087_001801"
     CDS             1543..2607
                     /locus_tag="U1087_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011836646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine--N-acetylmuramyl-
                     (pentapeptide) pyrophosphoryl-undecaprenol
                     N-acetylglucosamine transferase"
                     /protein_id="HEM4756247.1"
                     /translation="MKKIVFTGGGTVGHVTLNLLLIPRFLEEGWEVHYIGDGNGIEHE
                     QVVKSGLDVHFHSISTGKLRRYFSFQNMLDVFKVGFGVLQSVAIIAKIRPQALFSKGG
                     FVSVPPVIAANLLRVPVFIHESDLTMGLANKIAYKFATTMYSTFEQPASLTKVKHVGA
                     VTKVGKTNDKVTPIQLPEILSHFDKSLPTLLFVGGSGGAKVFNDLISQNSAALTERFN
                     IINLTGDSSLNQLDKNLYRVDYVTELYQPLMDLADVVITRGGSNTLFELIAMQQLHLI
                     VPLGRQASRGDQIENALYAEKKGYSKQIDESQLTFASLLVEVDELLKNKEFYIQNMTN
                     SNEIQSVDSFYNLLREDMGR"
     gene            2613..3707
                     /locus_tag="U1087_001802"
     CDS             2613..3707
                     /locus_tag="U1087_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsQ-type POTRA domain-containing protein"
                     /protein_id="HEM4756248.1"
                     /translation="MTEKDSNVEESVLEVEQASQVELDSEQISPAEKESVLAEEKGLS
                     TDVSTDVDIPEMTAPDDEKSAFFEQWKARHQAYLAHKDAAEIQAVDEGQTEQENPEAK
                     KSKRVLFQGIERKTESLKSKKETGEKVQTLKVDIPSKVVWKAIPVLVTSLLLAALALY
                     FISPTSKKKQIEVVGNERLTAEQVENYSLISPDDYNVTVALHADAYAKNIKKNSSSVE
                     TATIKFQFPATFTIHIKEYAIIGYIQQQSQWYPVLSSGEIGGEPISQDSMPEGYTTIN
                     LSDKELIKELAIELGKIDTGIRSAIQTINLTPSKVTADLLTLNMADGNTVLVPLSEIS
                     QKLPYYTKIAAEVTVPTTIDMEVGIYRYAS"
     gene            3860..5239
                     /gene="ftsA"
                     /locus_tag="U1087_001803"
     CDS             3860..5239
                     /gene="ftsA"
                     /locus_tag="U1087_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HEM4756249.1"
                     /translation="MARNGFFTGLDIGTSSVKVLVAEYIDNEMNVIGVSNVKSAGVKD
                     GIIVNIEVAAGAIKKAIEQAEEKSGIRIEKVNVGLPANLLQIEPTQGMIPVTTDSQEI
                     TDLDVENVVKSALTKSMTPEREVISFIPEEFTVDGFQGIKDPRGMMGIRLEMRGMLYT
                     GPRTILHNLRKTVERAGVQVENIVISPLALTRSVLNEGEREFGATVIDLGGGQTTVAV
                     MRGQELQYTNIYQEGGDYITNDISKVLTTSKSIAENLKYNYGIAYPQDASDKEKFTVE
                     VIGENAPVEVTERYLSEVIAARLRQIFDRVKQDLERTRALDLPGGIVIVGGGAILPGI
                     TELAQEVFGVNTKLFVPNQIGIRNPAFASVISFVEYVGELEDVENIAQHAVNGETTLR
                     HKPVEIPVARPRISQPIQREIVNELNTVDQVEEQVAPTYHDEEEEVRPAAKGNITDRI
                     RGLFGSMFE"
     gene            5265..>5635
                     /locus_tag="U1087_001804"
     CDS             5265..>5635
                     /locus_tag="U1087_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002263818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HEM4756250.1"
                     /translation="MAFSFEAAASHGAVIKVIGVGGGGGNAINRMIEEGVAGVEFIAA
                     NTDVQALSSSKAETVIQLGPKLTRGLGAGGQPEVGRKAAEESEEALTNVLTGADMVFI
                     TAGMGGGSGTGAAPVIARIAK"
BASE COUNT         1738 a          965 c         1359 g         1573 t
ORIGIN      
        1 gtatactgta agtggctcat ttggactacc cctctgtatg tttcgtcgct tacagtatag
       61 tccatttggg ctttttattg tattttgaaa tgaactagcg ctacgggtag agtttacttt
      121 tctgtcctct ggcttgaaaa aggtcttcgt aaagggtaaa ataaggtgtt agaaagtaaa
      181 ggtaattgag atgaagatga ttgatattgt aaaaaataag aaagtgctag tgctaggttt
      241 agctaaatca ggggaatctg cagcccgtct cctagataaa ttgagtgcta tcgtcactgt
      301 taacgatgga aagccttttg aagaaaatcc gactgctcaa tctttgttgg aagatggtat
      361 ccgtgttatt tgcgggagcc atcccttgga attattggat gaagatttcg ctttgatggt
      421 aaaaaatcca ggaattcgct atgataatcc tatggttgaa aaagcaattg gcaaaggaat
      481 tccagtatgg acagaggttg aattggccta cttggtatca gatgctccaa tcgtggggat
      541 aacaggttcg aacggcaaga caacgacaac gaccatgatt gcagaagtct tgaatgcagg
      601 aaataaacct gcaaaattat gtggaaatat tggctatcca gcatcttcgg tcgctcaaac
      661 tgcgactgca gaggatacct tggtgatgga attatcatct ttccagttaa tggggacaga
      721 atctttccgc ccgcatatcg ccgttgtgac caacctcatt gccagtcata ttgattatca
      781 tgggactttt gaagactatg tagcagctaa atggatgatt cagggtcaga tggcggctga
      841 ggattttgtg gtgctcaact tcaaccagaa agaagctaag gaattggctg gacagaccaa
      901 agcaactgtc gttccttttt cgacgctgga agtagttgat ggagcctact tagcagatga
      961 aaaactctat ttcaaaggtg aatacatcat ggatgctgac caaattggtg ttccaggttc
     1021 acacaatgtt gaaaatgcct tggcaacaat tgtggttgca aaattgttgg gagtagatca
     1081 ccaagcgatt caggaaagtt tgtcagcctt tggaggtgtc aaacaccgct tgcaatttgt
     1141 aggtgaggtc aacgaagttt ctttctacaa tgatagtaag tctaccaata tcttggcgac
     1201 tcaaaaagct ctttcagggt ttgacaatag caaggtcatt ttgattgcag gtggcttgga
     1261 ccgtggcaat gaatttgatg aattagtccc tgatttggtc ggactaaaga aaatggtgct
     1321 ccttggtcag tcagctcccc gtgttcaacg tgctgcagat aaggcagaag tgggaacgat
     1381 agaagctctc gatattgcgg atgcgactag aaaagccttt gccattgcag aaaaaggaga
     1441 tattgtcctt ttaagtccag ccaatgcaag ctgggatatg tatgccaatt ttgaagtgcg
     1501 tggcgacgtc ttcttacaga cctttgagga gttgaaataa tcatgaaaaa aattgttttt
     1561 acaggcggag ggactgttgg gcacgtgacg ctcaatctcc ttttgattcc gcgatttttg
     1621 gaagaaggct gggaagtcca ctatattggt gatgggaacg gtattgagca tgagcaggtt
     1681 gtgaaatcag gtttagatgt ccattttcat tctatttcga ctggaaaatt gcgccgttat
     1741 ttctctttcc aaaatatgtt ggacgtgttt aaagttggtt ttggtgttct tcaatccgtg
     1801 gccattattg ctaaaattcg tccgcaagct cttttttcaa aaggtgggtt tgtatcggtt
     1861 ccgccagtta ttgctgctaa tttgctgcgg gttccggtct ttatccatga atcagactta
     1921 acaatgggac tggccaataa aatagcctat aaatttgcga caaccatgta tagtactttt
     1981 gagcaacctg ctagcttgac taaagtaaaa catgttggtg cggttacaaa agtggggaaa
     2041 acgaatgaca aagttacacc aatccagttg ccagaaattc tcagtcactt cgataaaagt
     2101 ctgccgaccc tactgtttgt aggtggttcg ggcggtgcta aggtctttaa tgatttaatc
     2161 agtcagaata gtgctgctct gaccgaacga ttcaatatta tcaatttgac aggggatagt
     2221 agtctcaacc aattagataa aaacctatat agagttgact atgtgacaga actttatcaa
     2281 ccgttgatgg atttagcgga tgtcgttatt actcgtggtg gttccaatac tctgtttgag
     2341 ttgattgcca tgcaacaact ccatttgatt gtgcccctag gacgacaggc cagtcgaggg
     2401 gatcagattg aaaatgctct ctatgcagag aaaaagggat attctaagca gattgatgaa
     2461 agtcaattga catttgccag cctgttagta gaagtagatg agctattgaa aaataaggaa
     2521 ttttatatcc aaaacatgac aaattctaat gaaattcagt cagtagatag tttttacaat
     2581 ttgcttagag aagatatggg aaggtaggtt ctatgacgga aaaagattca aatgtagaag
     2641 aatcagtgct agaagtggaa caggcatctc aagtagaatt ggattcagaa caaatctcac
     2701 cagccgagaa agaatctgta ttagccgaag aaaaaggact ttctacggat gtttctacgg
     2761 atgtagacat acctgagatg actgctccgg atgatgaaaa aagtgccttt ttcgaacaat
     2821 ggaaagcacg ccatcaagcc taccttgctc ataaagatgc tgcggaaatt caggcagttg
     2881 acgagggaca gacagaacag gagaacccag aagctaaaaa gagtaaaagg gtcctttttc
     2941 agggaataga aagaaaaaca gagagtctga aatctaaaaa ggaaacaggg gaaaaggttc
     3001 aaactttaaa agttgatatt ccttccaaag tagtctggaa agctattccg gttcttgtga
     3061 cgagtttgtt actggcagct ctagccttgt attttatttc tccaaccagc aagaaaaaac
     3121 aaatagaggt tgtcggaaat gagcgactaa ctgctgagca agtagaaaat tatagcctta
     3181 tctctccgga tgattacaat gtgactgtag ctttgcatgc agatgcttac gcaaagaata
     3241 ttaagaagaa tagttcgtcc gttgagacag cgacaatcaa gttccagttt ccagctacct
     3301 ttaccattca catcaaagaa tacgcaataa taggctacat tcagcaacaa agtcagtggt
     3361 atccagtatt gtctagtgga gagattggcg gtgaaccgat ttcacaggat tccatgccag
     3421 aaggctacac aacgataaat ttatccgaca aggaattaat caaggaactg gccattgaat
     3481 tggggaaaat agatacagga attcgttctg ctattcagac aataaattta acgccaagta
     3541 aagtgaccgc ggatttgctg acactcaata tggcagatgg gaacacggtt ttagttccat
     3601 tgagtgagat tagtcagaag ttgccttact atacaaaaat agcggcagaa gtgacagttc
     3661 caacgacaat tgatatggaa gttggcattt atagatatgc aagctaaaat agacaatttt
     3721 gtaaagaaaa agtaataaaa aaatccttta aaaacaccat aattcgatat aatatggtat
     3781 aatgaatgat gactaattat actatttttc aaaatggaag atgatttgtt aaagttggaa
     3841 gtaagagagg actgatagaa tggctagaaa cggctttttt acgggattag atattggtac
     3901 aagctccgtt aaagtcttgg ttgcagaata tattgataac gaaatgaatg tgattggggt
     3961 cagcaatgta aaaagtgctg gcgtcaaaga tggaattatt gtaaatattg aggtggctgc
     4021 tggagcgatt aaaaaagcga tcgagcaggc agaagaaaag tcaggtatcc gcattgaaaa
     4081 ggtaaatgtt ggattacctg ccaaccttct tcagattgaa ccaactcaag ggatgattcc
     4141 tgttacaaca gattcacaag aaattacaga cttggatgtt gagaatgttg taaaatcagc
     4201 attgacaaag agtatgaccc cggaacgcga agtgatttca tttattccag aagagttcac
     4261 tgtcgatgga ttccaaggca ttaaggaccc tcgtggaatg atgggaattc gcttggaaat
     4321 gcgtggtatg ctgtacacag gaccacgtac cattcttcac aatcttcgta aaacggtgga
     4381 gcgtgcaggt gtccaagttg aaaatattgt aatttctccg ttggcactaa ctcgctctgt
     4441 attgaatgaa ggtgaacgtg agtttggtgc gactgtcatt gatcttggtg gcggtcaaac
     4501 gactgtggct gttatgcgtg gccaagagtt gcaatacaca aacatctacc aagaaggtgg
     4561 agattatatc acaaacgata tttcaaaagt attgacaact tcaaagagta ttgctgaaaa
     4621 cttgaaatac aactacggca ttgcctatcc gcaagatgca agtgataagg aaaaattcac
     4681 tgtcgaagtg attggagaaa acgctccagt tgaagtgacc gagcgctacc tttcagaagt
     4741 gattgcggca cgtctgcgtc agatttttga ccgtgtgaaa caagatttgg agcgtacacg
     4801 tgctctagat ttaccaggag gcattgttat tgtaggtggt ggtgctatct taccaggaat
     4861 tacagaattg gcccaagaag tgtttggtgt taacactaag ctttttgttc caaatcagat
     4921 tggtatccgc aatccagcat ttgcaagtgt gattagcttt gttgagtatg ttggtgagtt
     4981 agaagatgta gaaaatattg cccaacatgc agtaaatggt gaaactacct tgagacataa
     5041 gccagttgaa attcctgttg ctcgtcctcg gattagtcag ccaattcaaa gagaaatcgt
     5101 gaacgaattg aacacagttg atcaggtaga ggaacaagtt gctcctactt accatgatga
     5161 ggaagaagaa gttcgtccag ctgctaaggg aaacatcaca gatcgcattc gtggtttatt
     5221 tggcagcatg tttgaataag agaaaagaaa aggtgattta aactatggca ttttcatttg
     5281 aagcagcagc tagtcatggt gctgtcatta aagtaatcgg tgtcggcggt ggtggcggga
     5341 acgcgattaa ccgtatgatt gaagaaggtg ttgctggggt tgagtttatt gcagcaaaca
     5401 cagatgtaca agcgctaagt agctctaaag ctgaaacagt tatccaacta ggtcctaaat
     5461 tgactcgtgg tttgggtgct ggaggtcaac ctgaggttgg tcggaaagct gctgaggaaa
     5521 gcgaagaagc attgactaat gtattaactg gtgcagatat ggtcttcatc actgctggta
     5581 tgggcggtgg ctcagggact ggtgcggctc ctgttattgc acgtattgct aaaaa
//
LOCUS       DASFRC010000143         5604 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.143, whole genome shotgun sequence.
ACCESSION   DASFRC010000143 DASFRC010000000
VERSION     DASFRC010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5604)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5604)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5604
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.143"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            167..868
                     /locus_tag="U1087_001805"
     CDS             167..868
                     /locus_tag="U1087_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
                     /protein_id="HEM4756251.1"
                     /translation="MGTISKTDLKQQIKDGIIVSCQALPGEPLYREEGGIMPLLVKAA
                     QEAGAVGIRANSVRDIKEIKEVTTLPIIGIIKRDYPPQEPFITATMREVDELAALDIE
                     VIALDCTKRERYDGLDIVDFIKQIKEKYPEQLFMADISTFEEGLTAYEAGIDFIGTTL
                     SGYTSYSRQEEGTDIELVDRLCRAGIDVIAEGKIHYPDQVKIIHDLGVAGIVVGGAIT
                     RPKEIAERFISALHK"
     gene            896..2404
                     /locus_tag="U1087_001806"
     CDS             896..2404
                     /locus_tag="U1087_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HEM4756252.1"
                     /translation="MNFKKFSQLGQAFMLPISILPVAGLLLGIGGALSNSNAVAQFPV
                     LDQAWLQAVFTIMSTAGSAVFANLALIFAVGVAVGLADADKGTAGLSAGVAYLVYTAT
                     ISGFLTLFADKGASIDTGVLGALAIGITVATLHNKYRKIELPAFLGFFGGSRFIPIIS
                     SFAAIAIGSIFYIIWPPIQNLLVDFGKAIAEMGSFGTFLYGFGLRLTGAFGLHHTIYP
                     MFWYTSLGGSEVVAGETIQGAQNIFFAQLADANHTGLFTYGTRFFAGRFATMIFGLPA
                     SCLAMYHAIPKENRKKVGSFYSSSALTSLLTGITEPIEFSFLFVAPWLYVVHAFLDGL
                     SFLVADLLQIRIGNSFSGGLIDYLIFGVFQGNDKTNWIYVIPVGLLWAAVYYLVFKFL
                     VTKFHVLVPGMESSDQASHSEKVLSNGSSLRDNAIAIIDALGGADNIENVTACATRLR
                     VSLRNSGLVDKGVIQSIGATAVLDVKGGIQAIFGGKAILYSQEINQILGLEE"
     gene            complement(2508..3320)
                     /locus_tag="U1087_001807"
     CDS             complement(2508..3320)
                     /locus_tag="U1087_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HEM4756253.1"
                     /translation="MLKTPKHITAIIESHLDQMTRLEKQIASYFTQLDPSSTDLSQEN
                     TIQQLHISPSALTRFAKKCGFSGYREFVFAFQNNQQYLDKHFEKLQRSLTKKVLVDYE
                     EILTATNKLVDEEKLEEIAKLIDSSKRVYFYGIGSSGLVAMEIKSRFMRLGVVCDAIT
                     DKNNLIWTTTILDPSCLVIGLSLSGQTEEVMEHLLLASQKGIPTALLTTKSFQQAPYD
                     QIIPVASVRHLNYGNRISPQIPLLIMLDIIYAYFLAIDKEKKENIFKQTIRE"
     gene            3420..3917
                     /gene="ybeY"
                     /locus_tag="U1087_001808"
     CDS             3420..3917
                     /gene="ybeY"
                     /locus_tag="U1087_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018380869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HEM4756254.1"
                     /translation="MYIEMIDETGQVSSQMQEQITELLQFAAEKIGKQNKEMAVTFVD
                     NKRVHEVNLEYRGIDRPTDVVSLEYKPESEIVFDEEDLLDNPELAEMMEDFDAYIGEL
                     YISIDKAREQAEDYGHSYEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAY
                     GLTRE"
     gene            3898..4299
                     /locus_tag="U1087_001809"
     CDS             3898..4299
                     /locus_tag="U1087_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HEM4756255.1"
                     /translation="MDLQENNSKNRWKNRELIASLEFAVTGLLTAFKEERNMKKHLAS
                     AILVVLAGLIFQVSVTEWLFLLLSISLVIAFEIVNSAIENVVDLASDYHFSMLAKNAK
                     DMAAGAVLFVSGFALLTGLIIFVPKIWDFIF"
     gene            4317..5216
                     /gene="era"
                     /locus_tag="U1087_001810"
     CDS             4317..5216
                     /gene="era"
                     /locus_tag="U1087_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HEM4756256.1"
                     /translation="MTFKSGFVAILGRPNVGKSTFLNYVMGQKIAIMSDKAQTTRNKI
                     MGIYTTEEEQIVFIDTPGIHKPKTALGDFMVESAYSTLREVDTVLFMVPADEKRGKGD
                     DMIMERLKQAKVPVILVVNKIDKVHPDQLLEQIDDFRQQMDFKEIVPISATQGNNVNR
                     LMEILKENLDEGFQYFPADQITDHPERFLVSEMIREKVLHLTREEIPHSVAVVIESMK
                     RDEFTDKVHIRATIMVERDSQKGIIIGKQGAMLKKIGSMARRDIELMLGDKVFLETWV
                     KVKKNWRDKKLDLADFGYNEKEY"
BASE COUNT         1651 a          938 c         1319 g         1696 t
ORIGIN      
        1 tttaggtatg agaactcgtt ctgaaactat tttcaggatt ttttgtattt ctacaaaaat
       61 cgaaattaca ttctaaataa aaagaggtta ttgaaaaaat aataatatac tatataataa
      121 acaatgtaag cgctatctct agtatggagc agaaaggaat gacataatgg gcactattag
      181 taagacagat ttaaagcaac aaattaagga tggaattatc gtttcctgtc aggctttgcc
      241 aggcgaacct ctgtataggg aagaaggcgg tattatgcct ttactagtca aggctgccca
      301 agaagcaggg gctgtcggta ttcgggccaa tagtgtacga gatattaagg agataaaaga
      361 agtaactact ttaccaatta tcggaattat caagcgagac tatcctccac aagagccctt
      421 tattacggct acgatgcgag aagtagacga gttagcagct ctagatattg aagtcattgc
      481 tcttgattgt accaagcgtg agcgttatga cggactcgat attgttgatt tcattaagca
      541 aatcaaggaa aaataccccg aacaactttt tatggcagat atttcaacct ttgaggaagg
      601 attaactgct tatgaagcag gcatcgattt cattgggaca acactttcgg ggtatacctc
      661 ctatagtagg caggaggagg gaacagatat tgaattggtt gaccgcttgt gccgagcagg
      721 tatcgatgtg atagcggaag gaaaaataca ctatcctgac caagtaaaaa ttattcatga
      781 tttaggtgtg gcaggaattg ttgtaggtgg agcgatcaca cgtccaaagg aaattgcaga
      841 gcggtttatt agtgctttac ataaataata aataggttat agaaaggaat ggagtatgaa
      901 ttttaagaag ttttctcagc tagggcaggc ctttatgctg ccaatctcaa ttttgcctgt
      961 tgctggtctc ttactgggaa ttggaggcgc cttatcaaat agtaatgctg tagcacaatt
     1021 tcctgtattg gatcaagcgt ggttgcaagc tgtattcact atcatgagta cggcaggtag
     1081 tgcggtattt gcgaatttag cattgatttt tgcagttggt gttgctgtag gtttggcaga
     1141 tgctgataag gggactgctg gcctatctgc tggggttgca tacttggttt atacggctac
     1201 tattagtgga tttttaactc tttttgctga taagggagca agcattgata ctggagtttt
     1261 gggcgcttta gcgattggta tcactgttgc aactttacac aataaatatc gaaaaattga
     1321 attaccagcc tttcttggct tcttcggggg ctctcgtttt attccaatta tttcatcatt
     1381 tgcagcaatt gcgattggct ccatttttta tataatttgg ccaccgattc agaatttgtt
     1441 agttgatttt ggtaaggcaa tagcagagat gggaagtttt ggaaccttct tatatggttt
     1501 tggattacgt ttgacaggtg catttggctt gcaccatacc atctatccaa tgttttggta
     1561 tacctcatta ggtggaagtg aagtggtagc aggtgagaca atccaaggtg cgcaaaatat
     1621 tttctttgct caattagcag atgcgaatca cacaggctta tttacttatg gaactcgatt
     1681 ttttgctggt cgatttgcaa cgatgatttt tggtctacca gcatcttgtt tggctatgta
     1741 tcacgcaatt cctaaggaaa atcgtaagaa ggttggcagt ttttattcaa gtagtgcatt
     1801 aacttcccta ttgacaggaa ttactgaacc aatcgaattt tctttcttgt ttgttgctcc
     1861 atggctatat gttgttcacg catttttaga tggactatca ttcttagtgg cggatctcct
     1921 gcaaattcgt attgggaact cattttctgg tgggcttatt gattacttga tttttggtgt
     1981 tttccaagga aatgacaaaa ccaattggat ttacgtgatt cctgttggct tgctttgggc
     2041 agcagtttat tatctagttt tcaaattttt agtaaccaaa tttcacgtgc tagttcctgg
     2101 tatggaaagc agtgaccaag catcacattc tgaaaaagtt ttatcaaacg gttctagtct
     2161 tcgtgataat gcaattgcta tcatcgatgc tcttggtgga gcagataata ttgagaatgt
     2221 gactgcctgt gcaactcgat taagagtatc gctcagaaat agtggtcttg tggataaggg
     2281 agttattcag tctataggtg caacggctgt tttggatgta aaaggaggaa tacaggctat
     2341 tttcggaggt aaggctattc tgtatagcca agaaatcaat caaattcttg gtcttgaaga
     2401 atagagttat atttaagcga attaaaagca ttcaaactgt acctatcggg tatttttgaa
     2461 tgctttttgt tttattaaga ttgttgtgaa atagaaagac ggatgaatta ttctctaata
     2521 gtttgcttga aaatattctc ttttttctcc ttgtcaatag ccaaaaaata ggcgtagata
     2581 atatctagca tgatgagcag ggggatttgg ggtgagatac gattgccgta attgaggtgg
     2641 cggacagagg cgactggaat gatttggtca taaggtgctt gttgaaaaga ctttgttgtc
     2701 aagagggcag ttggtattcc tttttgactc gcaagaagca agtgttccat gacttcttcg
     2761 gtttgtccag acagagaaag accgataacc aggcaactag ggtctaaaat agtagttgtc
     2821 caaataagat tgtttttatc agtaattgca tcacagacga ctcccagtcg cataaagcgg
     2881 gatttgattt ccattgcaac caaaccagaa ctgccgattc cataaaaata gacacgcttg
     2941 ctactgtcaa tcagtttggc aatttcttcc aatttttctt catcaacgag tttattggta
     3001 gcagttagga tttcctcata gtctaccaag actttttttg ttaggctcct ctgtaatttt
     3061 tcaaaatgtt tatccaagta ttgttggtta ttctgaaagg caaagacaaa ttctcgataa
     3121 ccggaaaatc cacatttttt ggcaaaacgg gtaagagcag atggagaaat gtggagttgc
     3181 tgtatagtgt tttcttggct gagatcggtg ctagatgggt ctaactgagt aaaataactg
     3241 gcaatctgct tttcaagtct agtcatctga tccagatgag actcaatgat ggcagtgatg
     3301 tgtttcggtg tttttaacat tttccactcc tctgatagct tctgaggata ttataccact
     3361 aaaaacccct cattgatagg ttttatgata taatggaaac gtaaaaggaa tgtaagatta
     3421 tgtatattga aatgattgat gaaacagggc aggtttcttc tcaaatgcag gagcagatta
     3481 cggaattgct ccagtttgct gccgaaaaaa ttggcaagca gaataaggaa atggctgtga
     3541 cctttgtgga caataagcgt gtccatgagg tgaacttgga gtaccgagga attgaccgtc
     3601 cgacagatgt tgtcagttta gaatataagc cagagtcgga gattgtcttt gatgaggaag
     3661 acttactgga caatcctgaa ttggctgaaa tgatggaaga tttcgatgcc tatattggtg
     3721 aattgtatat ttctatcgat aaggcgcgtg agcaagctga agattatggt catagctacg
     3781 agcgcgaaat gggcttttta gctgtacacg gttttctgca tattaatggc tatgatcatt
     3841 atacgccaga agaagaagca gaaatgtttg gtttacaaga agaaattttg acggcctatg
     3901 gacttacaag agaataattc aaaaaatcgc tggaaaaacc gagaattgat tgctagtcta
     3961 gaatttgcag taacaggttt gttgacggct ttcaaggaag aacgcaatat gaagaagcac
     4021 cttgcttcag ctattcttgt agtgcttgcg ggacttattt tccaagtatc tgtgacagaa
     4081 tggctcttcc tcttgctcag tattagtctg gttatcgctt ttgaaattgt gaattcggct
     4141 attgaaaatg tggtggattt ggcgtcagac tatcattttt ctatgttggc aaagaatgca
     4201 aaagacatgg cagcaggggc agtcttgttt gtgtcaggat ttgccttgtt gacaggattg
     4261 attatctttg tgccgaaaat ttgggacttt attttttaga atagtaagga gaatacatga
     4321 catttaagtc aggttttgtg gcgattttag gtcgtccaaa cgttgggaaa tcaacctttc
     4381 tcaactatgt aatggggcaa aaaattgcca tcatgagcga caaggctcaa acaacccgta
     4441 acaagattat gggcatttat acgacagaag aagagcagat tgtcttcatt gacacaccag
     4501 gaatccacaa gcctaagaca gccttgggtg actttatggt ggaatctgcc tatagcaccc
     4561 ttcgtgaagt ggatacggtc ctttttatgg tgccagccga tgaaaaacga ggcaagggag
     4621 acgacatgat tatggaacgc cttaaacagg ccaaggttcc agtcatttta gtggttaaca
     4681 agattgacaa ggttcatcca gaccagcttt tggaacagat tgatgatttc cggcaacaga
     4741 tggacttcaa ggaaattgtg ccaatttctg ctacccaagg gaacaatgtc aaccgactca
     4801 tggaaattct caaggaaaac ctagacgaag gtttccaata ttttccagcg gaccaaatca
     4861 ctgaccaccc agaacgtttc ttggtatctg agatgattcg ggagaaggtt ctacacctga
     4921 ctcgtgagga aattccgcac tctgttgccg ttgtcattga atctatgaaa cgcgatgaat
     4981 ttaccgacaa ggtccatatc cgagcgacga ttatggtgga gcgtgatagc cagaaaggca
     5041 tcatcatagg caagcaagga gccatgctaa aaaaaatcgg ctccatggcc cgtcgtgata
     5101 ttgaactgat gctaggcgac aaagtcttcc tcgaaacctg ggtcaaagtc aagaaaaact
     5161 ggcgtgacaa aaaactagac ctcgccgact ttggttataa tgagaaagag tattaaaaac
     5221 gtccggggga cgtttttaac ccgagcttgg aaactagaga gcgaggaagt tcgagggagt
     5281 gaaacagtct gtgaatagac tgtttcagct ggtcacatag aaatgttaaa gtggccattt
     5341 gaaaaaaccg agcttgaaaa ctagagggcg aggtagttcg ggggagtgaa acaatctagg
     5401 aatagactgt ttcagcaggt cacataggaa tgtgaaagtg accatttgaa aacccgatct
     5461 tagaaattgg aaggcgagat agcctgggga taggctgtct aagtcaatca cttagaaata
     5521 gttagcagaa aagccgaaag gcttttactg cgttatggag aaatcttttt agtaaacaag
     5581 aaaggaaagc cgattaggcg ttgt
//
LOCUS       DASFRC010000144         5577 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.144, whole genome shotgun sequence.
ACCESSION   DASFRC010000144 DASFRC010000000
VERSION     DASFRC010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5577)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5577)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5577
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.144"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(10..1146)
                     /gene="dnaN"
                     /locus_tag="U1087_001811"
     CDS             complement(10..1146)
                     /gene="dnaN"
                     /locus_tag="U1087_001811"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000581170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEM4756257.1"
                     /translation="MIQFSINKNIFLQALSITKRAISTKNAIPILSTVKITVTSEGIT
                     LTGSNGQISIEHFISIQDENAGLLISSPGSILLEAGFFINVVSSMPDLVLDFNEIEQK
                     QIVLTSGKSEITLKGKEAEQYPRLQEVPTSKPLVLETKVLKQTINETAFAASTQESRP
                     ILTGVHFVLTENKNLKTVATDSHRMSQRKLVLDTSGDDFNVVIPSRSLREFTAVFTDD
                     IETVEVFFSNNQILFRSEHISFYTRLLEGTYPDTDRLIPTEFKTTAIFDTANLRHSME
                     RARLLSNATQNGTVKLEIANNVVSAHVNSPEVGRVNEELDTVEVSGEDLVISFNPTYL
                     IEALKATTSEQVKISFISSVRPFTLIPNNEGEDFIQLVTPVRTN"
     gene            complement(1300..2673)
                     /gene="dnaA"
                     /locus_tag="U1087_001812"
     CDS             complement(1300..2673)
                     /gene="dnaA"
                     /locus_tag="U1087_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HEM4756258.1"
                     /translation="MNQEQLFWQRFIELAKVNFKPSIYDFYVADAKLLGINQQVANIF
                     LNRPFKKDFWEKNFEELMIAASFEIYGEPLAIQYQFTEDEQEIKNTTNARSSVVHQIQ
                     TPESATPQETFKPVHSDIKSQYTFANFVQGDNNHWAKAAALAVSDNLGELYNPLFIFG
                     GPGLGKTHILNAIGNKVLADNPQARIKYVSSETFINEFLEHLRLNDMESFKKTYRNLD
                     LLLIDDIQSLRNKATTQEEFFHTFNALHEKNKQIVLTSDRNPDHLDNLEERLVTRFKW
                     GLTSEITPPDFETRIAILRNKCENLPYNFTNETLSYLAGQFDSNVRDLEGALKDIHLI
                     ATMRQLSEISVEVAAEAIRSRKQTNPQNMVIPIEKIQTEVGTFYGVSLKELKGSKRVQ
                     HIVHARQVAMFLAREMTDNSLPKIGKEFGNRDHTTVMHAYNKIKTLLLDDENLEIEIT
                     SIKNKLR"
     gene            complement(2876..3640)
                     /locus_tag="U1087_001813"
     CDS             complement(2876..3640)
                     /locus_tag="U1087_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEM4756259.1"
                     /translation="MEELRTLNISEIHPNPYQPRIHFDEKELLELAQSIKENGLIQPI
                     IVRKSSIIGYELLAGERRLRASQLAGLTTIPAVVKELTDDDLLYQAIIENLQRSNLNP
                     IEEAASYQKLISRGLTHDEVAQIMGKSRPYISNLLRLLNLSSQTKQAVEEGKISQGHA
                     RQLVSFSEEKQAEWVQLILSKDLSVRTLEKLIAVNKKKHTKLKQRDQFLKEQEDSLSK
                     TLGTATKIIKKKNGSGEIRISFNDLDEFERIINNFK"
     gene            complement(3701..4897)
                     /locus_tag="U1087_001814"
     CDS             complement(3701..4897)
                     /locus_tag="U1087_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEM4756260.1"
                     /translation="MERIPYMKKYLKFAILFVIGFFGGLIGALSASFFQPQVQQANSA
                     ITSVSNVQYNNETSTTKAVEKVQNAVVSVINYQKSANNSLGVIFGNIESSDELAVAGE
                     GSGVIYKKDGQYAYIVTNTHVINNAEKIDILLASGEKISGELVGSDTYSDIAVIKISA
                     DKVTAVAEFADSDTIKVGETAIAIGSPLGSVYANTVTQGIISSLSRTVTSQSKDGQTI
                     STNAIQTDTAINPGNSGGPLINTQGQVIGITSSKITSSSANSSGVAVEGLGFAIPAND
                     AVAIINQLEKTGQVSRPALGVHMVNLTTLSTSQLEKAGLSNTELTSGVVIVSTQSGLP
                     ADGKLETFDVITEIDGEAIQNKSDLQSALYKHQIGDTITVTYYRNNQKQTVDIKLTHS
                     TEELSE"
     gene            5072..5551
                     /gene="rlmH"
                     /locus_tag="U1087_001815"
     CDS             5072..5551
                     /gene="rlmH"
                     /locus_tag="U1087_001815"
                     /EC_number="2.1.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012131080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HEM4756261.1"
                     /translation="MKIKLITVGKLKEKYLKEGIAEYSKRLGRFAKLDMIELPDEKTP
                     DKASQAENEQILKKEADRIMSKIGERDFVIALAIEGKQFPSEEFSQKISDIAVNGYSD
                     ITFIIGGSLGLDSCIKKRANLLMSFGQLTLPHQLMKLVLIEQIYRAFMIQQGSPYHK"
BASE COUNT         1684 a          957 c         1016 g         1920 t
ORIGIN      
        1 taatattatt tagttggtac gcactggtgt aaccaattga ataaaatctt ccccttcatt
       61 atttggaatc aatgtaaatg gacggacaga agagataaag ctaattttca cttgttcact
      121 agttgtggct ttcaatgctt ctatcaagta agttgggtta aagctgatta ctaagtcttc
      181 acctgatact tctacagtat ctaattcctc attcacacgt ccaacttctg gagaatttac
      241 atgagccgat acaacattat tagcaatttc tagttttact gtaccatttt gggttgcatt
      301 tgaaagaaga cgagcacgct ccatcgagtg acgaagattt gcagtatcaa aaattgcagt
      361 tgttttaaac tcagttggaa ttaagcggtc tgtatcaggg taggtacctt ctaataagcg
      421 tgtatagaag ctaatatgct cgcttctaaa aaggatttga ttatttgaaa agaagacttc
      481 cactgtttca atatcatctg taaaaactgc agtaaattca cggagagaac gacttggaat
      541 gacaacatta aaatcatcac cagaggtatc aaggaccaat ttccgttggc tcatacggtg
      601 tgaatctgtt gcaacagttt ttagattttt attttctgtt aaaacaaaat gaacacccgt
      661 aagaatagga cgactttctt gtgtagaagc tgcaaatgct gtttcattaa ttgtttgttt
      721 taatactttg gtttctaaca ccaatggttt tgaagttgga acttcctgta aacgaggata
      781 ctgttctgct tcttttccct ttaatgtgat ttcagactta ccacttgtca aaacgatttg
      841 cttttgttca atttcattga agtcaaggac caaatccggc atgctggata cgacattaat
      901 aaagaaacca gcttctaaga gaatggagcc tggagaactg atcaaaagtc ctgcattttc
      961 atcttgaata gaaataaaat gttcaatcga gatttgtcca tttgaaccag ttaaagtgat
     1021 tccttcacta gttactgtaa tttttactgt tgaaagaatt ggaatagcat tttttgtact
     1081 gattgcccgt ttagtaatac taagtgcttg tagaaatata tttttattaa tagaaaattg
     1141 aatcatggat tctcctttat ttattatcta taaggttaat agtaatagta gtctttgtgt
     1201 attctgtgga aaagtgatga aagaccaata aaactgcgga aattaacttg ttcacaactt
     1261 gtggaaaaaa cagagttttt ttaaaaagtt atacacaggt taacgaagtt tattttttat
     1321 actggtaatc tctatttcta aattctcatc atccaagagg agagttttta ttttattgta
     1381 tgcatgcata acggttgtat ggtctcgatt accaaattct ttcccaattt ttggaaggga
     1441 attgtctgtc atttcacgtg ctaaaaacat agcaacttgt cgcgcgtgaa cgatatgttg
     1501 aacacgctta gaacctttta attctttcaa gctgacaccg tagaaagttc ccacttcggt
     1561 ttggattttc tcaataggaa taaccatgtt ttgtggattt gtttgttttc ttgatcgaat
     1621 agcttcagca gcaacctcga cacttatctc agacagttga cgcatagtgg ctatcaaatg
     1681 gatatctttt aaggcacctt caaggtcacg tacgttcgaa tcaaattgtc cagctagata
     1741 ggatagcgtc tcatttgtaa agttgtaagg caggttctcg cacttgttac gtaaaattgc
     1801 gatacgtgtt tcaaaatcag gtggagtgat ttcactggtt aacccccatt tgaaacgtgt
     1861 tactagtctt tcttccaaat tgtctaagtg atcgggatta cggtcgcttg tgagtacaat
     1921 ctgcttattt ttttcatgaa gcgcattaaa agtatggaaa aattcttcct gtgttgttgc
     1981 tttattacgg agagactgaa tgtcatcaat tagaagtaag tccagattgc gataggtttt
     2041 tttgaaactt tccatatcat tgagacggag gtgttctaaa aattcattga tgaatgtttc
     2101 cgatgagaca tattttattc ttgcctgggg attatcggct agaaccttat ttccaatcgc
     2161 atttaaaata tgagtttttc caagaccagg accaccaaaa atgaataatg gattgtagag
     2221 ctcacctagg ttatcagata cagctaaagc tgcagccttt gcccagtgat tattgtctcc
     2281 ttgtacaaag ttagcaaagg tgtactggga ttttatatca gaatgaaccg gtttaaaagt
     2341 ttcttgagga gtagccgact caggtgtctg tatctggtga accactgaac ttcttgcgtt
     2401 tgtagtgttc ttaatctcct gttcatcctc tgtaaattga tattggatgg caagaggctc
     2461 tccgtagatt tcaaaactag cggcaatcat taactcttcg aagttttttt cccagaaatc
     2521 ttttttaaat ggacgattta agaaaatatt ggcaacttgc tggttgattc cgagtaattt
     2581 tgcatcagcg acataaaaat cataaataga tggcttaaaa tttacctttg ccaattcaat
     2641 aaatcgttgc caaaaaagtt gttcttggtt catattttcc ccctttcaca ttatattcgt
     2701 tagaatagtg taccataaaa aacaaaagtt ttccacagat aattttaaaa atccacactg
     2761 ttaagaaaag ttttccacaa gatgtgaata aaagtcagaa cctttgctgg tcctgacttt
     2821 ttgtaatgat tttagtgtgg aaaagagtgt ttataaaaat aaattgtaaa caagtctatt
     2881 taaaattgtt gataattctt tcgaattcat cgaggtcatt aaagctaatc cgaatttctc
     2941 cgctcccgtt tttcttcttg ataatttttg tagctgttcc aagagtttta ctgagtgaat
     3001 cttcctgttc ttttaaaaat tggtcgcgtt gtttaagctt agtgtgtttt ttcttattta
     3061 cagctattaa tttttcaagc gtacgcacac ttaaatcctt tgataaaatg agttgaaccc
     3121 attcggcttg cttttcttct gaaaatgaca ccaattgtcg cgcgtgccct tgtgaaattt
     3181 ttccttcttc tacagcttgt ttagtctgag atgatagatt tagtaggcgc aataaattac
     3241 tgatatatgg tcttgatttt cccatgattt gagcaacttc atcatgtgtt aaccctctac
     3301 taatcaattt ttgataagag gctgcttctt ctatcggatt taagttagaa cgctgtagat
     3361 tctctatgat agcctgatag agtaaatcat catcagttag ttcctttacc actgctggta
     3421 ttgtagtcag tccagctaat tgactggctc gcaaccttct ttctccagct aataattcgt
     3481 atccgataat agaagatttt cttacaataa tcggttgaat taagccattt tccttaatgg
     3541 attgagcgag ctcaagtagc tctttttcat caaaatgaat tcttggctga tagggattgg
     3601 gatggatttc tgaaatattt agtgtacgta attcttccat atatccttat tctagcaaaa
     3661 aaaacgagac tttacaattg tgtaaagtct catttgtcaa ttattcgcta agttcttctg
     3721 tagaatgtgt caacttaatg tcaacagttt gtttctgatt attgcggtaa taagttacag
     3781 tgattgtgtc tccaatttga tgtttgtaga gagcactttg gagatcactc ttattttgaa
     3841 tagcttctcc gtcaatctca gtaatgacat caaaagtttc taattttcca tctgcaggta
     3901 gtccactttg tgtagagaca attacaacac cagatgttaa ttccgtattt gataatccag
     3961 ctttttctaa ttgactagtt gacaaggtcg tcaagttaac catatgaact ccaagagcag
     4021 gtcggctaac ttgtccagtt ttttcaagct gattgataat agctacggca tcatttgcag
     4081 gaatagcaaa tcccaaccct tctacagcca cgcctgagct atttgcagaa cttgaggtaa
     4141 ttttgctaga ggtaatgcct atcacttgtc cttgggtatt gattaacggt ccgccagagt
     4201 ttccagggtt gatagctgta tcagtttgaa tagcgttagt tgagattgtt tgtccatctt
     4261 ttgattgtga agtaactgtc cgacttaagc tagaaataat accctgggta actgtattgg
     4321 cgtagacgct acctagagga ctaccaattg cgatagcagt ttctccaact ttaattgtat
     4381 cggaatcagc aaattcagca acagcagtga ctttatctgc tgatattttt ataacagcta
     4441 tatcagaata ggtatcggaa ccaacaagtt caccgctaat tttttctcca gatgctaaaa
     4501 ggatatcaat cttttctgcg ttattaataa catgcgtatt tgtcacaata taggcatatt
     4561 gaccatcttt tttatagata accccagacc cctctccagc aacagctagt tcgtcagatg
     4621 attcaatatt tccaaagata acaccaagac tattgttggc tgatttttgg taattaataa
     4681 cagacacaac agcattttgt actttctcta cagcttttgt ggtggaagtt tcattattat
     4741 attgaacatt gctgacacta gtgatagcag aatttgcttg ttgcacctgt ggttggaaga
     4801 aagaggctga taaggccccg ataagacccc caaaaaatcc aattacaaat aaaatcgcaa
     4861 atttcaaata ttttttcata taaggaatcc tttccatttc tttaattttc cttaagagta
     4921 ctatttcttt cttaattata gcttaaagtt ttcaaaaatc aatccacaac ctgtggataa
     4981 ctctgtgaat tatgtgaaaa aactgtagcc atatcctgat tttctaaaaa tattttctgt
     5041 cgtatgcttg tggatatgtt acaattattt tatgaaaata aaattgatta ccgttggaaa
     5101 attgaaagaa aagtacctca aagaaggtat tgcagaatat agtaaacgat tgggacgatt
     5161 tgctaagttg gatatgattg agcttcctga tgaaaaaaca ccagataaag ccagtcaggc
     5221 agagaatgaa caaatattaa aaaaagaagc cgatagaatt atgtctaaaa ttggagagcg
     5281 agattttgtc attgccttag cgatagaagg caaacaattt ccatcggaag aatttagtca
     5341 aaagatatct gacattgcag taaatgggta ttcagatata acttttatca tcggtggtag
     5401 tttgggtctc gattcttgta ttaaaaaaag agctaatttg ttgatgagtt ttggacagtt
     5461 gacacttccc catcaactaa tgaaattagt tctcatcgag caaatttatc gtgcatttat
     5521 gattcagcag ggaagcccat atcataagta gtttcacgtg aaacaaggag tgaaaat
//
LOCUS       DASFRC010000145         5543 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.145, whole genome shotgun sequence.
ACCESSION   DASFRC010000145 DASFRC010000000
VERSION     DASFRC010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5543)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5543)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5543
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.145"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(611..1555)
                     /locus_tag="U1087_001816"
     CDS             complement(611..1555)
                     /locus_tag="U1087_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011117663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="HEM4756262.1"
                     /translation="MEHTQNQAQILIDKNSKGKKRDWRGRKIASLKLSEVFQNLDYKP
                     SMVERVSSCAEALRFHKQPDGRLKLYQAYFCKNKLCQMCNWRRSMKYSYQTACIVNEA
                     MKQFPKGRFLFLTLTVKNVEGENLSSTLSSLTQAFNRLFKYKKVQANLLGYLRSIEVT
                     YNEDRKDYHPHIHVLLFVRPNYFSGRGNNYISQEEWAELWAKSLKVNYVPMVDIRAVK
                     DQGKGLHGAILETAKYPMKPFELSIENAQVVDDLYNGLYRKRQLGYGGLFKEIKKKLA
                     LDDAENGDLVHTTDDSEVSDGTKIVAIWNATKQNYFIK"
     gene            complement(1818..2525)
                     /locus_tag="U1087_001817"
     CDS             complement(1818..2525)
                     /locus_tag="U1087_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000947694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756263.1"
                     /translation="MKIKKRSGEQRFETLSNKSFWLKFLIFFGYLFHDIFSRIKNGQD
                     FREYGLTLYCGRQGAGKTMAMTEYLERMRKKYPKAIICTNFGYVHQTLPMTDWKQIFT
                     VRNGLDGVIFAIDEIQNEYNSASWKNFPEGLLAEITQQRKQRIKIVGTSQVFTRVVKQ
                     LREQTFEVVDCRTLAGRWTFTKAFDAEEYNAVCDRPEVKMKLRRLWRKNFVQTKRLRE
                     LYDSYAKIEQLTKELES"
     gene            complement(2593..2844)
                     /locus_tag="U1087_001818"
     CDS             complement(2593..2844)
                     /locus_tag="U1087_001818"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756264.1"
                     /translation="MLQGLIDMCVGLLEWLIGLIPRITFFEGFASAVSSIYGVLYEAS
                     VIIPFSDLFICIGVISGFYVTLFVIKCINWIVHRIPILN"
     gene            complement(2847..4415)
                     /locus_tag="U1087_001819"
     CDS             complement(2847..4415)
                     /locus_tag="U1087_001819"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756265.1"
                     /translation="MKKILKKCQIWICIFLLIFGAVHRPKTVKADAGVLTGGGMVIGA
                     LNPAVIPVILIGLAAFLLLGYTISNWDEIEAFGQSVANELVAMGHSVGDFISGSSVKV
                     NDVFKTAVKNVANKTGNTLDRYNQSVHYTGGLQVHTGTFANIRMLVGSDTAQLQVGTK
                     PAGSGLLGGASKKFVEGRDYLVPAITVIVDVAPTNLNLKLQRNGSVYTDTEIIRNSSG
                     QIVQLRRRFSNSGKAANTFSIYIEGPYGKSYTVTGVSIPEIGLGERPNDKVSLEGAKS
                     TAITSQKVDEYVQTAFPDTSTTVTFDQNADVTGATLATIPTISNHNLTDTQVQDLTKI
                     KSGVDTAVNTGADTAIDSMTGTASAGVGAGWDWLSKLWEWLKKLLDAILGLPAAILAG
                     LQAFWDSLIKWLTDIWTAIKAIPGAISKAWTDALTWAFGVDQTWLDARIKNLRLAFNS
                     KFPNIQAFNYRFGDKSAFDDIRITLPGFGTHAVVSGSAMTAFAVKAKPFISGIFYLLT
                     ALFFMRKFYKVSED"
     gene            complement(4477..4617)
                     /locus_tag="U1087_001820"
     CDS             complement(4477..4617)
                     /locus_tag="U1087_001820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756266.1"
                     /translation="MITADLIQPVVQAVTSNFTAIVPAGLSILALSLGVSAVPKVIKK
                     FF"
     gene            complement(4680..5168)
                     /locus_tag="U1087_001821"
     CDS             complement(4680..5168)
                     /locus_tag="U1087_001821"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756267.1"
                     /translation="MSSEDFVGYNKALLEKMDRQIKQNENIESQLKKINERLEKAEIA
                     RIDTEKQKQAEEQARIERGEQTTEEKSLTALENLTKVIQEQPPSSDDAILKELEKLNS
                     SYSELKTSETTKQVQKLVTTISKDYEGMTLQTSVINSYGLLFIPAILIILFLHNSLKE
                     FI"
     gene            complement(5182..5481)
                     /locus_tag="U1087_001822"
     CDS             complement(5182..5481)
                     /locus_tag="U1087_001822"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756268.1"
                     /translation="MKNDVLILGARPYDFTDENTGKHISGVTLWVLPFANEDPANQIG
                     LLPVKYSLTQEQFAVIAGASFPAVAEMHMQLNIATKRIKFDHFENIQPVDLEKAA"
BASE COUNT         1641 a         1186 c          925 g         1791 t
ORIGIN      
        1 aaaaaaaaaa agcaatttaa caaaaaatgt tccatttctt gttaaattgc actgcttaag
       61 gttaatctat gcattttata tatttatttc acggtttcat tgacgacaag gaacctggga
      121 ctaaacttag aaaatcgtct gttggtcggt ctaatgcccc accaacacga tttctagttt
      181 aatctgtccc agcttatcgt caacgaactt tcgcgacata aaacgttcac tgacccctaa
      241 aaagacgaat attttttgtc ctggagagtg tcacgtcggc attaaaaacc gaatattttt
      301 acacgtgtaa aaatatgata aaatagtctt gctatctgcc ccaatagtga ataacttgaa
      361 gggaggtatt atctaatgga tatcttgcta gagctcttgc tcaacatcgt ggctaacgtt
      421 gtcgcttact tcgtttgcaa gtggttagat gatgagctta atcgatagct agccctaccc
      481 gttaatctct tttgagaacg taaaaaaagc cctcaggaac ggcaattcct gggggctttg
      541 gtatattcta acgaatatct ttgcttgctt atagtatagc agatttcaaa aaatatgcaa
      601 tcattacaat ttacttgatg aaatagtttt gtttcgttgc gttccagatt gcaacgattt
      661 tagtaccgtc tgaaacttca ctatcgtctg tagtatgtac taaatcacca ttttcagcat
      721 catctagggc tagtttcttc ttgatttcct taaatagccc gccataacct aactgccgtt
      781 ttcgatacag cccgttatac aaatcatcaa ccacctgggc attctcaata cttagttcaa
      841 atggtttcat tggatatttt gccgtttcaa gaatggcacc atgaagccct ttgccctggt
      901 ccttaactgc tcgtatatcg accattggca cataattaac cttaagagat ttcgcccata
      961 attctgccca ttcttcctgg ctgatatagt tgtttcctcg accactgaag taattaggtc
     1021 tgacaaatag aagtacatgg atatgcggat ggtagtcttt tctgtcttcg ttgtaagtaa
     1081 cctcgataga acgaagatag cccaataaat ttgcttgcac ttttttatat ttaaacaaac
     1141 gattaaaagc ttgtgtcaaa gaggaaaggg ttgatgataa gttttctccc tcaacatttt
     1201 taaccgtcaa agtcagaaat agaaatcgac ctttcggaaa ttgcttcata gcttcattga
     1261 ctatgcaggc tgtttgataa gaatatttca ttgaccgcct ccagttgcac atttgacaga
     1321 gcttattttt acagaaataa gcctgatata gtttcaatct tccgtctggt tgcttatgaa
     1381 atcgtaaagc ctctgcacat gatgaaacac gctcgaccat gctcggctta taatctaaat
     1441 tctgaaatac ctcagacaat ttcagactag caatcttgcg acctcgccag tctctttttt
     1501 tgcccttgga attcttatct atgagtattt gagcttgatt ttgagtatgc tccatgttat
     1561 aatttacctg taattacaaa gaatataaaa aaagtccttg cattttcaac ctttctttta
     1621 aatttgaatt agacacttaa attataacag aaagcttgag cagaaacaag gctttttttg
     1681 cgcctaaaaa ctcagtcgta ccaagggttt aggcctcgtc aaagctatgc attttaaaat
     1741 cttgttattt ctatatgtat caagataaga agaaagctcc tgcggagctt tctcaaaagg
     1801 ggcttgcagc ccctttttta gctctctaac tcttttgtta gctgctcaat tttagcgtaa
     1861 ctgtcataca gttctcgaag tcgttttgtc tgcacaaaat tcttccgcca caatctccga
     1921 agtttcattt tcacttctgg gcggtcgcaa actgcattat actcttcggc atcaaatgcc
     1981 ttggtaaagg tccaacgacc tgcaagagtt cggcagtcta caacctcaaa agtctgttct
     2041 ctaagctgtt tcacaaccct agtaaatacc tgggatgtac caacaatttt aatgcgttgt
     2101 tttctctgtt gggtaatctc tgccaacaag ccctctggga agttcttcca gctggccgag
     2161 ttgtattcgt tttggatttc atcaatggca aaaataacac cgtccagacc gttgcgaact
     2221 gtaaaaatct gtttccagtc ggtcatgggt aaagtttgat gaacataacc aaaattcgta
     2281 cagataatgg ctttaggata tttcttccgc attcgttcca ggtactcggt cattgccatt
     2341 gttttccctg ctccctgcct accacagtac aatgttagac cgtactctct gaaatcttgg
     2401 ccattcttaa ttcttgaaaa aatgtcgtga aataggtaac cgaaaaatat caagaatttc
     2461 aaccaaaatg atttatttga tagtgtttca aagcgttgtt caccgctcct ttttttaatt
     2521 ttcatatctc ctccagaaaa gcgctgcagc ttgcccgcaa gcatgcagac gcttttttct
     2581 ttgtcgtttt ctttaattca aaatcggtat gcggtgaaca atccagttga tacacttaat
     2641 tacaaataaa gtcacataaa atccagaaat gacaccgata catataaata aatctgaaaa
     2701 tggaataatt acggatgcct catataacac tccgtaaatg ctagaaactg ccgaagcaaa
     2761 tccctcaaaa aatgttattc gtggaattaa accaataagc cattctaaca agcctacaca
     2821 catatctata agcccctgta acatctttaa tcctccgaaa ccttatagaa tttacgcata
     2881 aaaaacaaag ccgtcagcaa gtagaatatg ccactaatga aaggcttagc cttgacggca
     2941 aaggccgtca tagcacttcc agacacaact gcatgagtgc cgaaacctgg tagagtaatt
     3001 ctaatatcat caaatgctga cttatcgcca aaacgataat taaaggcttg aatatttgga
     3061 aatttgctat tgaatgctaa tcttagattt ttaatccttg catctaacca ggtctggtca
     3121 actccgaaag cccaagtcaa agcatcagtc caagccttag aaattgctcc tggaatagct
     3181 ttaattgctg tccagatgtc tgtcagccat ttaatcaaac tatcccaaaa tgcttgcaaa
     3241 cctgctagga tagccgcagg aagccctaaa atcgcatcta agagcttttt aagccactcc
     3301 catagtttcg acagccaatc ccaaccagct cccacaccgg ccgaagctgt cccagtcatg
     3361 ctatctattg ccgtatctgc tccagtattt accgctgtat ctactccaga tttaatttta
     3421 gtaaggtctt gtacttgcgt gtctgttaaa ttatgatttg aaatggtcgg aatagttgcc
     3481 aatgttgcac cagtcacatc tgcattctga tcaaatgtga ctgttgtaga agtatctgga
     3541 aaagccgttt gaacgtactc atcaactttc tgagaagtaa ttgctgttga tttggcacct
     3601 tcaagcgaaa ccttatcatt aggccgctct cccaaaccaa tttctggtat cgatacacct
     3661 gtgaccgtgt agctcttacc gtatggaccc tctatatata tactgaaggt attagcagct
     3721 tttccactat ttgaaaatct tctccttaac tgcacaattt gaccagatga atttcgaata
     3781 atttctgtat ctgtataaac acttccattt cgttgtaatt ttaaatttag attggttgga
     3841 gctacatcaa cgattacagt aatagcaggt actagataat ctctaccctc aacaaatttc
     3901 ttgctagccc ctcctagcaa acctgaacca gctggtttag ttcctacttg taattgagct
     3961 gtatcacttc caaccaacat acgaatatta gcaaacgttc ctgtatgaac ctgtaaacca
     4021 cctgtataat gaacactttg attgtatcta tctaacgtat tgcctgtttt atttgctacg
     4081 ttcttaaccg ctgttttaaa gacatcatta accttaacgg atgaacctga aataaaatcg
     4141 ccaacactat gccccattgc aactaactca ttagcaacag attgcccaaa tgcttctatc
     4201 tcatcccaat tactgattgt gtaaccaagc aacaagaaag ctgccaaacc aatcagaata
     4261 acaggaatta ctgctggatt taatgcacca atcaccatac cgccaccagt caaaacacct
     4321 gcatcagctt taactgtttt aggtctatgg actgcaccaa atatcagcaa gaaaatacat
     4381 atccaaatct gacatttttt caatattttt ttcatttgta tcctcctaac aaaaaaaggg
     4441 tacaagctga aacaagtacc ctttttccga aaattattaa aagaattttt tgataacttt
     4501 cggaactgct gaaacaccga gcgacaacgc caagatagac aaaccagctg gaacgatagc
     4561 tgtaaagttg cttgtaactg cttgtacgac tggttggata agatctgctg taatcatttg
     4621 attacctcct ataaaaaatt tttttaattt taggtgttta acgtcccctc ggacaaggat
     4681 taaataaatt ctttcagcga attatggaga aataagataa tgaggatagc aggtataaaa
     4741 agtaatccgt aactattgat tacagaagtc tgtaatgtca ttccttcgta atctttagaa
     4801 attgtagtca ctagtttttg aacttgtttc gttgtttctg aggttttcaa ttcggaatag
     4861 ctagaattta atttttcaag ttctttcaga atggcatcat ctgaggaagg tggttgctcc
     4921 tggataactt ttgtaagatt ttccaaggct gtcaggcttt tctcttcagt agtctgctcc
     4981 cctcgctcaa ttcttgcctg ttcttcagct tgtttttgct tttcggtatc aatacgagca
     5041 atttcagctt tttctagtcg ttcatttatc tttttaagtt ggctctcaat gttttcattc
     5101 tgttttattt gtcggtccat tttttccagg agagccttgt tatagccgac aaaatcttca
     5161 ctagacaccc cattcataaa attacgcagc cttttctaag tcaactggct gaatgttttc
     5221 aaagtgatca aacttaatac gttttgtagc aatatttaac tgcatgtgca tttctgcaac
     5281 agctggaaaa ctcgctccgg caatcactgc aaattgttcc tgtgtcaaac tatatttaac
     5341 tggtagtaat ccaatttgat ttgccgggtc ttcatttgca aaaggtagta cccataaagt
     5401 aaccccagaa atatgcttac ctgtattttc atcggtaaaa tcatagggac gagctccaag
     5461 aattaaaaca tcatttttca ttttttacct ccttgtgttt tttcctggtc aattaatcta
     5521 ttcgcaagaa aattaaattt gct
//
LOCUS       DASFRC010000146         5537 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.146, whole genome shotgun sequence.
ACCESSION   DASFRC010000146 DASFRC010000000
VERSION     DASFRC010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5537)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5537)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5537
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.146"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            8..646
                     /locus_tag="U1087_001823"
     CDS             8..646
                     /locus_tag="U1087_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3990 domain-containing protein"
                     /protein_id="HEM4756269.1"
                     /translation="MDLTSKQIKNLSHSKWYHATLKRHLPSLLKGIKVDFNLGHELDF
                     GAGFYITSDFQQAQKYINRLVEFLNANNASSKFLGNVDEEGIILEFELTDFPSIFTTS
                     KYKCHYFNSHKASNDVIDFAEFVFQNRLRSTELIHQFDFIYGVQTDDNPTGLLQKYKA
                     GMVSKADVLEEFRKPFSFKQLSIHNQDFCDIMKVNKIYLSEDGKELDQWQKL"
     gene            631..855
                     /locus_tag="U1087_001824"
     CDS             631..855
                     /locus_tag="U1087_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000301903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756270.1"
                     /translation="MAKTVISPVDLYSNELAQALLEASKYRLEASVAHQIARQYASQV
                     DFEDPILMHVGVNSIASTLIDKIKPEYFQT"
     gene            934..2136
                     /gene="dcm"
                     /locus_tag="U1087_001825"
     CDS             934..2136
                     /gene="dcm"
                     /locus_tag="U1087_001825"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007520231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA (cytosine-5-)-methyltransferase"
                     /protein_id="HEM4756271.1"
                     /translation="MYFLDLFAGIGGFRLGLEQAGHICVGFCEIDRFARNSYQAIFDT
                     GGEVEFHDIREISNKSFRKLRGKIDCICGGFPCQAFSLAGRRLGFEDTRGTLFFEIAR
                     ATQQIQPRFLLLENVKGLLNHDQGRTFRTILTTLNELGYDVEWQVLDSKYFGVPQHRE
                     RVYIIGHSRGRSRQFIFPIGRKSKQTNLSSPTCLGNINPSGSGLNGNVYSSSGISPTL
                     TTNKGEGVKIAYPILTPDRLVKRQRGQRMKDPTEPMFTLTAQDRHGVVLEKRMPRKRG
                     LYIRSNTNKGFEIAIEGDSLNFAYPSSNFRRGRVGKQVAQTLVTGNSLGVVTNQLRIR
                     KLTPRECFRLQGFPDWAFNRASSVSSNSQLYKQAGNAVTVPVVYEIGKRLAAIEKEGK
                     AVENHESC"
     gene            2114..3073
                     /gene="dcm"
                     /locus_tag="U1087_001826"
     CDS             2114..3073
                     /gene="dcm"
                     /locus_tag="U1087_001826"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001045233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA (cytosine-5-)-methyltransferase"
                     /protein_id="HEM4756272.1"
                     /translation="MKTMRVVELFGGIGAFRKALLNQKVPHELIDFVEIDRNCVKSYN
                     VLYNENFIPQSVKGYSLPNVQIDLLMHGSPCQDFSRSGLKRGGRKGSYTRSSLLFETI
                     MILKNAVKKPKWVIWENVVGVLDKKMKPTFETYLSELEYLGYSSCYWVLDSYDFGIPQ
                     KRKRVFVVSFLGKVNPFDFSKLKRMKSPSIQVFLEEDVADKYLVTQPSILKYIEKASQ
                     SVFTERVHIIQDYCYTISTKQTRVPNAGFIKLTNGKYRYLTERECFRLMGFTDLDFDL
                     LRTVYPEKTNKKSSILYQQAGNSIVVPVLEAIIKQIYQKELIK"
     gene            3070..3522
                     /locus_tag="U1087_001827"
     CDS             3070..3522
                     /locus_tag="U1087_001827"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756273.1"
                     /translation="MKLLHKKSIYESDYEESLRHDKEIDDIISKLLSLPDYHSEFQLR
                     FEDDYHKEMNVPLDYESFLHNIFDFIAEQDIKNGVDVLLTDEGNLYFMAYGQSYTIRS
                     TGVSDVVRTSVTVISKDEDDNKVDFGQHFACPVPEKEQTNKPKSEHVL"
     gene            4313..4747
                     /locus_tag="U1087_001828"
     CDS             4313..4747
                     /locus_tag="U1087_001828"
                     /inference="COORDINATES: protein motif:HMM:NF025561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TnpV protein"
                     /protein_id="HEM4756274.1"
                     /translation="MNQALLIEKMNTTLTVNDFSHCQSTEEIVEVIYRLTLQTLRTNQ
                     QIRDEIGKALYAKERLEFLSKEENKTELLLELYQTGQLIPHLIAVEKESQSMAEQIES
                     HLIQEWKLTEDLKTKDMLSWISQMNNLRQSVKEQVRENLIYI"
     gene            4768..>5537
                     /locus_tag="U1087_001829"
     CDS             4768..>5537
                     /locus_tag="U1087_001829"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase"
                     /protein_id="HEM4756275.1"
                     /translation="MHDVLRKGTGTRGGRLRVAHFFSSQEDIKIQAQFLQKEYGWGGA
                     TGPNFPISYNYDSRGLHLTRKADGYNETFSWRKVAGEIDRLLENETYLSDDESKLYQY
                     NEQIFSNFQESPLFEFDKLDNGQVNVFLEDELVARIDTVGQVSYVVELEDRFKFEIDE
                     YVQNLETSLLIEKISQHEQLDLFDDSAFDDSSVDDTISVAEGINSADHITPSQSTRKP
                     DLLDNYILDNLPHSLSPSERLDNNLEAIRIIKKLDLEG"
BASE COUNT         1838 a          890 c         1156 g         1653 t
ORIGIN      
        1 tattgaaatg gatttaacaa gtaagcaaat taaaaatttg tcacatagta aatggtatca
       61 tgctacttta aaaagacatc ttccgtcttt gttgaaaggg ataaaggtag atttcaactt
      121 aggacatgaa ctcgattttg gtgctggatt ttatatcact tcggattttc aacaagctca
      181 aaaatatatc aatcgtttgg tagaatttct aaatgccaat aatgctagtt cgaaattttt
      241 ggggaatgtg gatgaggaag ggattatttt agagtttgaa ctgacagatt ttccttccat
      301 ctttacaact tctaaataca agtgtcacta tttcaatagt cataaggctt ctaatgatgt
      361 aatagatttt gctgagttcg tgtttcagaa tcggcttcgc tcaacggagc ttattcatca
      421 atttgatttt atctatggag ttcagacaga cgataatccg actggtttac ttcaaaaata
      481 taaggctgga atggtttcaa aagcagatgt tttagaagaa tttcgtaagc cattctcatt
      541 taagcagtta tccattcaca atcaagactt ttgtgatata atgaaggtaa ataagatata
      601 tttatctgaa gatggaaagg agttagacca atggcaaaaa ctgtgattag ccctgttgat
      661 ttgtatagta atgaattagc acaggctttg ttagaagcat ctaaatacag acttgaggct
      721 agtgttgcac atcaaattgc aagacagtat gcaagtcagg tagattttga agatccaatc
      781 ttgatgcatg ttggggttaa ctccatcgca agcaccttga ttgataaaat aaaacctgag
      841 tattttcaga cttaaaaaaa ctttttgata cttaatcatt agagcgatta gagaaatcta
      901 gtcgcttttt tctattgtca gaaaggagga aaaatgtatt ttttggattt atttgcaggg
      961 ataggaggtt ttcgattagg acttgaacaa gctggtcaca tttgtgtagg tttttgtgaa
     1021 atagaccgct ttgctcgaaa ttcctaccaa gctatttttg atacgggagg agaagttgaa
     1081 tttcatgata tacgagaaat atccaataag tcattccgaa agctccgagg aaaaattgat
     1141 tgcatctgtg gtggattccc ttgtcaagca ttttcgctcg ctggacgaag attgggattt
     1201 gaagatacta gaggaactct gttcttcgag attgctagag cgacccaaca aatccaacca
     1261 cggtttttac tgcttgaaaa cgttaagggc ttactcaatc atgaccaagg gaggacgttc
     1321 cgaactatac tcaccacgct taatgaactg gggtatgatg ttgaatggca agtacttgac
     1381 agcaaatatt ttggtgtccc tcaacacagg gaaagagtct atattattgg acattctaga
     1441 ggaagaagtc gacagttcat ttttcctatc ggacgaaaaa gtaaacagac taatttatca
     1501 agtccaactt gtctaggaaa tataaatcct tcaggaagtg ggttaaatgg aaatgtatat
     1561 tcatcgagcg gaatttcgcc cactttgact actaataaag gtgagggggt aaaaattgct
     1621 tatcctatcc taacacctga tagattggtt aaaaggcaaa ggggacagcg gatgaaagac
     1681 ccaacagaac ccatgtttac gttaacggca caagaccgac acggagttgt cttggaaaaa
     1741 cgcatgccga gaaaacgagg actttacata cgttcaaata caaataaggg attcgagatt
     1801 gctattgaag gtgactcgct taattttgct tatccatcat caaattttcg tagaggacga
     1861 gttggaaaac aggttgctca aaccttagta actggtaact ctcttggagt tgtaacgaat
     1921 caattgcgga ttcgtaaatt aactccaaga gagtgttttc gtttacaggg ttttcctgac
     1981 tgggcattta atcgagccag tagtgtttct tccaattcgc aattgtataa gcaagcaggt
     2041 aacgcagtaa cggtacctgt tgtttatgaa attggcaagc gattagccgc tatagaaaag
     2101 gagggaaaag cagttgaaaa ccatgagagt tgttgaatta tttggaggaa ttggtgcttt
     2161 tcggaaagca ctactaaatc agaaggtccc tcatgaattg atagactttg ttgaaataga
     2221 taggaattgt gtaaaaagtt ataacgtcct ctataacgag aattttattc ctcaatccgt
     2281 taaagggtat tccttaccaa atgttcagat tgacctgtta atgcatggta gtccttgtca
     2341 ggatttttca cgttctggac taaaaagagg gggaaggaaa ggttcgtata cgagaagttc
     2401 actattgttt gagacaatta tgattttaaa aaatgctgtc aaaaaaccta aatgggttat
     2461 ttgggagaat gtcgtaggtg tactagataa gaaaatgaaa ccaacatttg agacctatct
     2521 atctgaactg gaatatttag gctattcatc ttgctattgg gttttggaca gctatgattt
     2581 tggaatacct caaaaacgga aacgagtctt tgtagttagt tttctaggca aagtcaaccc
     2641 attcgatttt tcaaaattaa aacggatgaa atctccgtcg attcaggtat ttttggagga
     2701 agatgtagcc gataagtatc tggttaccca accttcaatt ctaaaatata ttgaaaaagc
     2761 ttctcagtca gtttttactg aacgagttca tatcattcaa gattattgct ataccatttc
     2821 tacgaagcaa acacgagtgc caaatgctgg gtttattaaa cttactaatg ggaaatatcg
     2881 ctatctaaca gaaagagaat gtttccgctt gatggggttt actgatttag actttgattt
     2941 attacggact gtatatccag aaaaaaccaa caagaaatcc agtatccttt atcaacaagc
     3001 cggaaattcc atagtagtac cagttctaga ggcaatcata aaacaaattt atcaaaagga
     3061 gttaatcaaa tgaaactatt acacaagaaa tcaatttacg agagcgatta cgaagaatct
     3121 ttgcgacatg acaaggagat agacgatatt atatcaaaac ttttgtcgct accagattac
     3181 cattcggaat ttcaattacg attcgaggat gattatcata aggaaatgaa tgttccttta
     3241 gactatgaat catttcttca taatattttc gattttattg cggagcaaga cataaaaaat
     3301 ggagttgatg ttcttttgac tgacgaagga aatctttact ttatggctta cggccagtcg
     3361 tataccattc gctctactgg tgtatcggat gtggttcgaa cttctgtaac agttatctct
     3421 aaagatgaag atgataataa agtggatttt ggtcagcact ttgcttgtcc agtccctgaa
     3481 aaagagcaaa cgaacaaacc taagtccgaa catgttttat agggatagaa aggagaagtc
     3541 atgcgagttg aagattatgc caactatgtc ggagacttat ccagttacta tctctcagat
     3601 gttgatgctt atcagagact gttagcacgc ttgggttttg ttgttggctt tgactttcaa
     3661 aatcaattga gcattattca tcagagaccg acagccagtt tatgctcaga ctttcaatcc
     3721 tggaaatcag ttgaccatat tgttagacga ggtcaaaaag ggattccaat tttattaaat
     3781 aaacaatcca aaatgtcaat tggatatgta tttgacataa gtcagacagt tttgacgaat
     3841 agagataaca agccaattgt ggagtggcaa tatgaagcag gtcgggatct atccatttta
     3901 gcagaccttg ttcatgagag actatcgctt agaccagaaa atgaggttgc tgcaattcgc
     3961 tatcttgcaa atcttgcaac gaaaggtatt ggttcaaaag ttcttgtcgg aatgaattta
     4021 gatgtggaaa ccgaatcaaa cttattacgc tttattgaac aaagttttga agctgtatta
     4081 tcaaatagac ttggaattgc actaaaaccg aaccaagact tgctagaaaa tggtctcggt
     4141 caatttagcc cacgtcagtt tctgatattt ggtgattatt tgaccagaat gtcgcaaaaa
     4201 attctcagga ttattcatca aaaaaagtat gagaaaattg cattaaaaga gcagacaaaa
     4261 gaactgattg agcggtataa tgaggttgta gaagaaagag gaggacaaag agatgaatca
     4321 agcattactg atcgagaaga tgaacacgac cttgacagtc aacgacttca gtcactgtca
     4381 atcaacagag gagatagtag aggtgattta tcgtctaaca ttacagaccc ttcgaaccaa
     4441 tcaacagatt cgggacgaga ttgggaaagc tctctacgcc aaggaaagat tggagtttct
     4501 gagcaaggaa gagaacaaga ccgaactact tttggaatta tatcagacag gacagctgat
     4561 tccacatttg atagcagtgg agaaagaatc acagagcatg gcggaacaaa tagaaagtca
     4621 tctgattcaa gaatggaagt tgaccgagga cttgaagacc aaggatatgt tgagctggat
     4681 cagccagatg aacaatcttc gtcaatccgt caaggaacaa gttagggaga atctaattta
     4741 catttagata aaatatcaac tgaagaattg catgatgtac ttcgaaaagg tactggtaca
     4801 cgaggtgggc gacttagagt tgctcacttt ttttctagtc aggaagatat aaaaattcaa
     4861 gctcagtttt tacaaaaaga atatgggtgg ggtggtgcta ctggtcctaa ttttcctatt
     4921 tcctacaatt atgactccag aggcttacac ttgacaagaa aggctgatgg ttataatgaa
     4981 acatttagtt ggaggaaagt tgcaggtgaa attgatagac ttttagaaaa tgaaacctat
     5041 ctgtctgatg acgaaagcaa gctttaccaa tacaatgaac agatattctc taattttcaa
     5101 gaatcaccat tatttgaatt tgataaactg gacaatggtc aagttaatgt atttttggaa
     5161 gatgaacttg tagcacgaat tgatacagtt ggtcaggtta gctatgttgt agagttagag
     5221 gaccgtttta agtttgaaat tgatgagtat gttcaaaacc tagaaactag tttgctgata
     5281 gaaaaaatca gtcagcatga gcagttggat ctctttgatg attcagcttt tgatgatagt
     5341 agtgttgatg acacaatatc tgttgcggaa ggtatcaatt cagcagacca tatcactcct
     5401 tcacagtcca ctaggaaacc tgatttatta gataactaca ttctagataa tttaccacat
     5461 tcactctctc cctccgaacg cttagacaat aacttagaag cgattcgaat cataaaaaaa
     5521 ttagatttgg aaggtag
//
LOCUS       DASFRC010000147         5526 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.147, whole genome shotgun sequence.
ACCESSION   DASFRC010000147 DASFRC010000000
VERSION     DASFRC010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5526)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5526)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5526
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.147"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(76..2277)
                     /locus_tag="U1087_001830"
     CDS             complement(76..2277)
                     /locus_tag="U1087_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-galactosidase"
                     /protein_id="HEM4756276.1"
                     /translation="MGIIFHEKTKEFHLYNEFISYVLTVLPNGHIGSLYYGKRVTETA
                     SYQYVREDEYRALTSFVEDDDRFFSLQYANPEFACYGTTDYFSPTFELVQKDGSSLSH
                     FVYQGHRIYAGRSALKGLPHLYLDEEGQADSLDIYLLDEESQTRLVLSYTIFRDYPAV
                     TRSARFEQLGEQSVCLNRALSMTLCLPDMDYDWLHLDGAWGRERHLQLSPLHQGCQSI
                     YSLKGASSAEHNPFMALKRPTADEQQGEVLGFSLVYSGNFLAQVDVSSFQKTRVSMGI
                     HPERFSWTLDKGEEFQTPEVVMVYSEHGLNGMSQTYHRLFQKHLVRGYWRDRERPVLL
                     NNWEAMSFDFDEETILSLAKEAAGLGVELFVMDDGWFGKRNHDRAGLGDWTVNREKLP
                     SGLTGIIDQVHAMGMKFGLWIEPEMVNKDSDLYRAHPDWIFHHPQHSRSHGRHQYTLD
                     LSREDVYQNIHDQLHRLLAEHDIDYIKWDMNRYMTEVFTCTREAERQGETFHRYILNL
                     YRLYDSLIAAFPTVLFESCSSGGARFDPGMLYYAPQTWVSDDTDAMERLKIQYGTSMV
                     YPLNSMGCHVSASPNQQLGRATPLSTRANVAFFGSFGYELDLFECSQEELEEMKEQIA
                     FYKAHRRIFQQGIFTRLKSPFDGEITAWQVQSSDGQQVIVGYYRRLTTANLAYQRLYL
                     QGLEEEAVYHLDGEVYTGSQLMHTGLSIRHGDHVGDNKDFTSYLMLLQKRQ"
     gene            complement(2287..3117)
                     /locus_tag="U1087_001831"
     CDS             complement(2287..3117)
                     /locus_tag="U1087_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM4756277.1"
                     /translation="MKQSAFKSTIWMHAFLILVAMGMLIPFVWMVLTSFKTVTESTQM
                     NPFHFLPSNWMVSNYTEAIRTNNFPILYLNTILMMLWRIFSSVMFSAMAAYAFARLEF
                     PGRNFLFGLVLFQMMVPPQLFVIPQYLMIDQLGMRNTIFALVFPGIVSAFGTFLLRQF
                     FMGLPKELEESAKLDGCNIGQTFFKVMLPLAKSGLIALAIFTALFAFKDLLWPLIINS
                     EADKATLSSALSKIQGAYAVNYPQLMAASVLAIWPMLVLYVIFQKQFIQGIATSGGKL
                     "
     gene            complement(3128..4021)
                     /locus_tag="U1087_001832"
     CDS             complement(3128..4021)
                     /locus_tag="U1087_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM4756278.1"
                     /translation="MFRKKGSLNEAIWGWGMVAPTIIGLVVLNIIPIFQTMKMSFHKS
                     GDFGKGDIFVGLANYQRMLGDAQVWQATWNTLKYTILVVPATVALAMLLAVLLNSKIK
                     GKHIYRTIFFLPMVAAPAAVTMVWKWLYNTDFGLINYILRRLGLGAVNWIEDPKIALY
                     SIALIGIWSTVGYSMILILAGLQEIPTDFYEAARIDGASPAKQFFSITLPLVSPTLFF
                     VVVTSVIQSMQVFDVIYMMEDVRSPAYDKTVSLVYLFYNNSFKYSDKGYGSTIVMLLL
                     LIILVITFVQMKVQKKWVHYR"
     gene            complement(4090..5364)
                     /locus_tag="U1087_001833"
     CDS             complement(4090..5364)
                     /locus_tag="U1087_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HEM4756279.1"
                     /translation="MKKIGRYVTLLAAAGLLAACSTSTESSKTTGGSSSGKTEISYAI
                     WDSGQEPGLRKIADEFEKKNPDIKINIQVSDWDSYWTMLEAGATGGSLPDTFWMHSNE
                     IYRYGSNEMLLPLDEYLAKSEDAKLANFPDGLNEIYNINGKQYAIPKDFDTIGLWYNK
                     KLFDEAGIPYPDDTWDWNKLKEVAKKLTKPDGSQYGFGAGLSNQEGYYNFIYQNGGKV
                     ITDDLKSGYADPKTIEALDYYFSFVKEKISPAITVDKERAEAFQNGQVAMSVFGSWNL
                     SGFTANDYIRENADVAVLPKGPDGTRATIFNGLGHAIAATTKHPDAAWKWVEYLSSKE
                     AQEMQATLGVAISAYKGAADTWVDSNKNFTIKNYVDMVDYAQIRPYSQTTIKWEDKAY
                     ELLKPAYLGEKATEEAAKETADMMNAELATEK"
BASE COUNT         1680 a         1330 c         1023 g         1493 t
ORIGIN      
        1 agaggtcttg cccttattga tgtactttct gcataaaata gacccagccg atagctgggc
       61 ctatggatag ggaggctact gtcgtttctg gaggagcatc aaataagaag taaagtcttt
      121 attgtctcca acatggtccc catgtcgaat cgacaaacct gtatgcatta attggctacc
      181 agtataaact tctccatcaa ggtgatagac cgcttcctct tccaacccct gcaagtacaa
      241 gcgttgatag gcaagattgg cagttgttaa ccgacggtaa taacccacga tgacttgctg
      301 cccatccgag gattggacct gccaagccgt tatttctcca tcgaatggac ttttcagacg
      361 agtgaaaata ccctgttgga aaatcctacg atgagccttg taaaaggcaa tctgctcctt
      421 catctcttcc aactcttctt ggctacactc aaacaaatcc aactcatagc caaaacttcc
      481 aaagaatgca acattggcac gtgtgcttag tggagtagca cgccccaact gctgattcgg
      541 actagctgac acatgacaac ccatgctatt tagaggatat accatgctcg ttccatattg
      601 gattttcaag cgttccatgg cgtccgtgtc atcgctgacc caggtttgcg gtgcatagta
      661 gagcatccct gggtcaaatc tagctccacc acttgaacaa gattcgaata agactgtcgg
      721 aaaagctgct attaggctat catataaacg gtagagattg agaatatagc gatggaaggt
      781 ctcaccttgc cgctccgcct cccgtgtgca tgtaaagacc tcagtcatgt aacgattcat
      841 atcccacttg atatagtcaa tatcatgctc agccaacagc cgatggagtt ggtcatgaat
      901 attttgataa acatcctccc tcgacaaatc caacgtatat tggtggcgtc cgtgagatcg
      961 actatgctga ggatgatgga aaatccagtc tggatgcgct cggtataaat cactgtcttt
     1021 attgaccatt tcaggttcaa tccaaagtcc aaatttcatt cccatagcat gaacttggtc
     1081 aataatccct gtcaagccac ttggcaattt ctcacgattg actgtccaat ctcccaagcc
     1141 tgctcggtca tggtttcgct tgccaaacca accatcatcc atgacaaaga gttcaacacc
     1201 aagacctgca gcctctttgg ccaaggaaag aattgtttcc tcatcaaaat caaagctcat
     1261 ggcttcccag ttattcaaga gaacaggtcg ttctctatca cgccaatagc cacgtaccag
     1321 atgtttttgg aagaggcggt gataggtttg gctcatgcca ttcaaaccat gctcgctata
     1381 aaccataaca acctcaggcg tctggaactc ttctccctta tctaatgtcc aagagaaacg
     1441 ctcaggatgg attcccatac tcactcttgt tttttggaaa gaactcacat ccacctgcgc
     1501 caaaaagttt ccgctataga cgagcgagaa gcctagtacc tctccctgtt gctcatccgc
     1561 agttgggcgt ttcaaagcca taaagggatt gtgctccgca ctactagccc ctttgagact
     1621 gtaaatagac tgacaacctt gatgaagagg cgatagttgc agatgccgct cacgccccca
     1681 agccccatcc aaatgcaacc aatcatagtc catatcaggc agacaaagtg tcatactcaa
     1741 ggcacggttc aaacagacag attgttctcc gagttgttca aaacgagcag agcgagtcac
     1801 cgctggataa tctcgaaaaa tcgtataaga caagaccagg cgtgtctgcg actcttcatc
     1861 caacaaataa atatccaaac tatctgcctg tccctcctca tccagataga gatgaggaag
     1921 ccccttcaat gccgatcgcc cagcataaat cctatgccct tggtagacaa aatgcgatag
     1981 gctactacca tccttctgca ccaactcaaa agtcggagaa aaatagtccg ttgtaccata
     2041 acaagcaaat tcaggattgg catattggag cgaaaagaaa cggtcatcgt cttctacaaa
     2101 ggaagtcaaa gcacgatact catcttcacg cacatactga taggaagctg tttctgttac
     2161 acgctttcca taatacaaac taccaatatg accattaggc aagaccgtca acacatagct
     2221 aataaactca ttgtaaagat ggaattcctt tgtcttttca tgaaagataa ttcccattgt
     2281 agcctcctat aattttccac cagatgtcgc aatcccttgg atgaactgct tctggaatat
     2341 cacatatagt accaacatcg gccaaatagc caaaacactt gcagccatga gctgaggata
     2401 gttaacagcg taagctccct gaattttaga aagtgcgcta gacaaggtag ccttgtccgc
     2461 ttctgagttg ataatcaatg gccacagcaa atccttgaaa gcaaacaaag ccgtaaaaat
     2521 cgctaaggca atcaagccag acttggccaa aggcaacatg accttaaaga aggtctgccc
     2581 gatattacaa ccatccaatt ttgcagattc ctccaattct tttggaagac ccatgaaaaa
     2641 ttgacggagc aagaatgtcc caaaggcact gacaattcct gggaatacca gagcaaaaat
     2701 cgtattgcgc ataccaagtt ggtcaatcat caaatactga ggaatgacga ataactgagg
     2761 tggcaccatc atttgaaaga ggaccagacc aaacaagaaa ttccgcccag gaaactccag
     2821 tcgagcaaag gcataagctg ccatagctga aaacataacc gagctaaaga tacgccataa
     2881 catcatcaaa atggtgttca gatagagtat cggaaaatta ttagtccgaa tagcctccgt
     2941 ataattgctc accatccagt tacttggtaa aaagtggaaa ggattcatct gagtggattc
     3001 ggttaccgtt ttaaaagacg tcaacaccat ccaaacaaat gggattagca tgcccattgc
     3061 cactaaaatc aagaaggcat gcatccagat tgttgattta aaagctgatt gtttcacatg
     3121 aacctcctta acggtaatgc acccattttt tctgtacctt catctgaacg aaagtaatga
     3181 caagaataat caataacaac aacatgacaa tggtggagcc atagccctta tccgaatatt
     3241 taaaggaatt attgtaaaac agataaacca gagatactgt cttatcatag gcaggactac
     3301 gaacatcctc catcatatag ataacatcaa agacttgcat ggattgaatg acactggtta
     3361 ccacaacaaa gaacagggtt ggtgaaacca agggcagggt aatggagaaa aattgcttgg
     3421 ccggactagc tccatcaatg cgagctgcct cataaaaatc cgttggaatt tcttgcaaac
     3481 cagctaaaat taaaatcata ctatagccaa ccgtactcca aattccaatc aaagcgattg
     3541 agtatagagc aatctttgga tcttcaatcc agttcacagc acccagtccc aaacgacgca
     3601 agatatagtt aatcaagccg aagtccgtat tgtagagcca tttccaaacc atggtcaccg
     3661 cggctggtgc tgccaccata ggcaagaaaa aaatggttcg ataaatatgc ttacctttaa
     3721 tcttagaatt aagcaaaact gcaagcaaca tggccaaggc aacggtagcc ggaacaacta
     3781 gaatcgtata tttcaaggta ttccatgtcg cctgccacac ttgcgcatcc cctaacatgc
     3841 gttggtaatt tgccaagccg acaaagatgt cacctttgcc gaaatctcca ctcttatgaa
     3901 aactcatctt catggtttgg aaaataggaa taatattgag cacgactaat ccaataatgg
     3961 tcggtgctac cattccccat ccccaaattg cctcatttaa acttcctttt tttcggaaca
     4021 tcttatcccc atccttcttc attttaataa gaaggtccgg ggaagaatca acttcccaag
     4081 acctcctacc tatttttcag ttgctaattc agcattcatc atatcagctg tttctttggc
     4141 agcttcttca gttgcttttt ctccaagata agcaggtttc aatagctcat aagccttatc
     4201 ttcccacttg atggttgttt gtgaatatgg acgaatctgt gcataatcca ccatgtcaac
     4261 ataattcttg atagtaaagt ttttgtttga atctacccaa gtatctgccg cgcctttata
     4321 agccgagatt gccacaccaa gtgttgcctg catttcttgt gcctcttttg agctgaggta
     4381 ttcaacccat ttccaagcag catctggatg tttagtggta gcagcaatgg catgacccaa
     4441 tccattaaag atggttgcac gagttccatc tggacctttt ggcaaaacag ctacatcagc
     4501 attttcacga atgtagtcat tagcagtgaa accagataaa ttccaagaac cgaagacgct
     4561 catagccact tgaccgtttt ggaatgcttc ggcccgctct ttatctactg taatagccgg
     4621 tgaaattttt tctttgacaa agctaaagta gtaatccaaa gcctcaatgg tcttaggatc
     4681 agcatagcct gatttcaaat catcagtaat aaccttacca ccattttgat agataaagtt
     4741 gtagtagccc tcttggttac tcaaaccagc accgaaacca tactgactac catctggctt
     4801 ggtcaatttc ttcgctactt ctttcaactt attccaatcc caagtatcat ctggatatgg
     4861 aatgcctgct tcgtcaaaca atttcttatt gtaccaaaga ccgattgtat cgaaatcttt
     4921 tggaatagcg tactgcttac catttatgtt gtagatttca ttcaagccat ctgggaaatt
     4981 agctagttta gcatcttcac tcttggctaa gtattcatcc aatggcaata gcatttcatt
     5041 ggaaccatag cgataaatct catttgaatg catccagaag gtatcaggca atgaacctcc
     5101 tgtcgcacca gcttctaaca tggtccagta ggaatcccag tccgatactt gaatattgat
     5161 tttaatatct ggattctttt tctcaaactc atccgcaatc tttctcaaac caggctcttg
     5221 accagaatcc caaatagcat aggatatttc tgtctttcct gaactacttc ctcccgtagt
     5281 tttgctagac tcagtcgaag tagaacacgc tgccagcagg cctgcagccg caagcaaggt
     5341 aacatagcga ccaattttct tcatgataat actccttttc ttttgtcgaa tacgtcgacg
     5401 aactttgtta tttctactac aactataaca tgtaagcgct ttataatcaa ataggaatat
     5461 ttgacatatt ccatatgatt ttgggatatt ttttaatttt ttcaaataaa atgtcacatt
     5521 tacata
//
LOCUS       DASFRC010000148         5459 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.148, whole genome shotgun sequence.
ACCESSION   DASFRC010000148 DASFRC010000000
VERSION     DASFRC010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5459)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5459)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5459
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.148"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            16..1449
                     /locus_tag="U1087_001834"
     CDS             16..1449
                     /locus_tag="U1087_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002358345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HEM4756280.1"
                     /translation="MSKLPKNFLWGGAVAAHQLEGGWQEGGKGISVADVMTAGRHGVA
                     REITAGVLEGKYYPNHEAIDFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPKGDELEP
                     NEAGLQFYDDLFDECLKYGIEPVVTLSHFELPYHLVTEYGGFRNRKTIEFFARFAETC
                     FRRYKDKVKYWMTFNEINNQANYQEDFAPFTNSGIVYQEGENREAVMYQAAHYELVAS
                     ARAVKIGHEINPDFQIGCMIAMCPIYPATCKPSDILMAQKAMQKRYYFADVHVHGFYP
                     EHILRYWERKGISVDFTEKDREDLLEGTVDYIGFSYYMSFAIDSHRENNPHYDYLETE
                     DLVKNTYVKASDWEWQIDPEGLRYALNWFTDMYHLPLFIVENGFGAIDQVEEDGMVHD
                     DYRIDYLGAHIKEFIKAVDEDGVDLMGYTPWGCIDLVSAGTGEMRKRYGFIYVDKDDE
                     GNGSYARSPKRSFAWYKNVIATNGEEV"
     gene            1531..1671
                     /locus_tag="U1087_001835"
                     /pseudo
     CDS             1531..1671
                     /locus_tag="U1087_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006532260.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1733..2071
                     /locus_tag="U1087_001836"
     CDS             1733..2071
                     /locus_tag="U1087_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756281.1"
                     /translation="MESIVGIVVIVVVTVVLVYLLTNMWKIRAASVGQTDDTTLYFVR
                     FKGVNPPDLANSSVFNQVAKIKCAKGDTYQVTSTVNDVKLKDLIMDEFQLKSSEVVVY
                     YPPRLFFYAS"
     gene            2249..2563
                     /locus_tag="U1087_001837"
     CDS             2249..2563
                     /locus_tag="U1087_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003037418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS cellobiose transporter subunit IIB"
                     /protein_id="HEM4756282.1"
                     /translation="MVKALIICAGGMSSSLIAKKTQTLLEEQGHKVEMNAVGVPEGGK
                     KINAAEYDLYLISPQTKMHFKQFEEAGKKVGKPVVQIPPQAYIPIPMGIEKMAKLVLD
                     NI"
     gene            2610..4583
                     /locus_tag="U1087_001838"
     CDS             2610..4583
                     /locus_tag="U1087_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM4756283.1"
                     /translation="MLNTKEKMILQYLYQHQNGFSTSKVLAEHLSYTDRTIRTYIKKL
                     ISEISEEETGFAILSKQGYGYQLRISDEEKYHRFLSENQLVFGVDYSDAENRHKQILN
                     KLIFEEECILFDDLADQLFVSRSTLSHDFKHIREHLASYGLSIESKPYKGVYVVGEER
                     QKRHFIMDYFFSEHFYQNIHHFLSNDKSLALPLSFEELTIVVLDECRDSQLKLSDYII
                     QNLVIHLGLAIQRYQKGFTISPVTIDKEKYAEELAVATKIARRLSHRLEPQNRFPEEE
                     VVYIALHLISKTQLEVEKSSDRLLLRQALFEVLGRYDDEYGYQFSHDFSLIEGLLTHL
                     EVLVERLRHNLHIDNPLLDDIKTTYHDIFDLTQSLMAELSVFHSYSLSESEIAYVALH
                     LMASLERQKEKYKLNVLVICATGYGSAQMLKNRIKNELGQQVSISDVIGYYDLDNQKL
                     QGIDVIMSTIDLSGLVFKVPVITVSVFLTDQEVKEVKQRLAALRPSLQKPQVVEKESN
                     LEKYFDQYFSEQRFLVVESAEKEMLLKQMISQLESEGLGNHQEFYKLIEARESLSTLV
                     FDKDIAVPHPLKPISEKHMISVAVIKNGLYWEEGYGQIRLVFLVSPSIYTNEGLSTIT
                     NRLVDLVDLPEVKKDIINSPDFETFKHVFLQRE"
     gene            4594..4908
                     /locus_tag="U1087_001839"
     CDS             4594..4908
                     /locus_tag="U1087_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018380105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS cellobiose transporter subunit IIA"
                     /protein_id="HEM4756284.1"
                     /translation="MNTEELQMAAFGIILSSGNARSVIHEAFAAMREGDYDKAEELLE
                     AANADMLEAHHSQTGLLQEYASGTEVKVEIIMVHAQDHLMTTMTLREVALEMLALYRK
                     VG"
     gene            4923..5435
                     /locus_tag="U1087_001840"
     CDS             4923..5435
                     /locus_tag="U1087_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756285.1"
                     /translation="MSKGMASKKLQKTPEQLKQESKRKSQLFNRYMLFRYSLAVFFFA
                     NLYWLLVQLFQPSLYLILPSLMLIAIIIATAEQFKLYSAEESRLTKTEFVLRAQAILQ
                     GLIVVLVILGHISTLFPTFSNHISAKLFVIALQLLGLALVVLNIKRLEQVRQNTDKYY
                     LRFQIIRKYL"
BASE COUNT         1707 a          881 c         1181 g         1690 t
ORIGIN      
        1 atacaggagg caattatgtc taaattacct aaaaattttt tatggggtgg agcagtagca
       61 gcccaccaac ttgaaggtgg ctggcaagaa ggtggaaaag ggatttctgt agcagatgtg
      121 atgactgctg ggagacacgg ggtagctaga gaaatcacag ctggcgtatt agaaggaaaa
      181 tattatccta atcatgaggc cattgatttt tatcatcgct acaaagaaga tattgcactc
      241 tttgcagaga tgggcttcaa gtgtttccgt acttcaattg catggacacg catttttcca
      301 aagggcgatg aactggaacc aaatgaagct ggcttgcagt tttatgatga cttatttgat
      361 gagtgtttaa aatatgggat tgaacctgtc gtcaccctat cacactttga attaccttat
      421 catttggtaa cggagtatgg tggttttaga aatcgtaaaa ctattgagtt ttttgcgcgt
      481 tttgctgaga cctgcttccg tcgttacaag gataaggtca aatactggat gacctttaac
      541 gagattaata accaagcaaa ttatcaggaa gattttgcac cttttaccaa ctcaggtatt
      601 gtttatcaag agggtgagaa tcgtgaagca gttatgtatc aagcggccca ttatgaatta
      661 gttgcctctg cacgcgctgt taaaattgga catgaaatta atcctgactt tcaaattggt
      721 tgtatgattg ccatgtgtcc gatatatcct gcgacttgca aaccatctga tattttgatg
      781 gcacaaaagg cgatgcaaaa acggtattac tttgcagatg ttcatgtgca tggtttctac
      841 cccgagcata tcttgcgcta ctgggagaga aaaggtatta gcgttgattt cacagagaaa
      901 gatcgcgaag atttgctaga aggaacagtt gattacatcg gtttctcata ctatatgagt
      961 tttgctattg attctcaccg cgagaataat cctcattacg attatcttga gacagaggac
     1021 ttggtaaaaa atacctatgt caaggcttct gattgggaat ggcaaattga cccagaagga
     1081 ttgcgctatg cattaaactg gtttacagat atgtatcatc tgccactttt tatcgtagag
     1141 aatggctttg gtgcaattga ccaagttgaa gaagatggca tggtacatga tgattaccgc
     1201 attgactatc ttggagcaca tatcaaggag tttatcaaag cagttgatga ggatggggtt
     1261 gacttgatgg gatatacgcc gtggggctgt attgacctgg tgtcagcagg gacaggtgaa
     1321 atgcgcaaac gctatggctt tatctatgtt gataaagatg atgaaggcaa tggaagctat
     1381 gcacgttctc ctaaacgctc attcgcatgg tataaaaatg ttatcgcaac aaatggtgag
     1441 gaagtttaat gagaagacct ctgtagcgta atagctacat gggtcttcat ttatgttttt
     1501 tagtattggt atgttaaagg agaaaattgc atggttggtt ttatcgcagt ttgcttaact
     1561 acctttggat ttgtacctcg ggttatcaag gtagttaaga caaaggatac agagtcgatt
     1621 tcgttaggaa tgtatatgat gtctgtgaca gggatgtcct ttttaaacca ccaagataag
     1681 cgttttttct agttgtttgt aagtgtatcg tatcttggaa aagaggttta ttatggaatc
     1741 tatagttgga atagttgtca ttgtagttgt tacggttgtt ctggtttatt tattaactaa
     1801 tatgtggaaa atcagagcgg cttcagttgg tcaaacggat gacactacgc tatactttgt
     1861 aagatttaag ggggtaaatc cgccagactt agcaaatagt agtgttttta atcaagtagc
     1921 caaaatcaaa tgtgctaaag gagataccta tcaagtcact tcaacagtca atgatgtgaa
     1981 actgaaagat ttgattatgg atgagtttca gctcaaatct tctgaggttg tagtttacta
     2041 tcctcctcgt cttttctttt atgcatcata gtcgcaactc ttcggagttg ctattttttt
     2101 gtttctggag agtagcggaa aaaaggttta tatgagtagc gaaatttccg tagtggtaag
     2161 gaaatacttc ctatggaaaa tgtaagcgcg ttcatgtaaa ataaaatcat aacaaaagta
     2221 aataataaaa tagttggagg aaaatcctat ggtaaaagct ttgattatct gtgcaggagg
     2281 catgtcttct tcactcattg ctaaaaaaac acaaacactt ttggaagaac aaggtcataa
     2341 agtagaaatg aacgctgttg gtgttccaga aggtggtaaa aaaattaatg cggcagagta
     2401 tgacttgtac ttaattagcc cgcagacaaa aatgcatttt aagcaatttg aagaagcagg
     2461 taagaaggta gggaagccag ttgtccaaat tccacctcaa gcttatatcc caattccgat
     2521 gggaattgaa aaaatggcta aattggtctt ggataatatc tagttctttg ctatcataga
     2581 tggtatattg atttgaaaag aggctagtta tgctaaatac taaggaaaaa atgatattac
     2641 agtatcttta tcagcaccag aatggttttt caaccagtaa agtattggca gagcatcttt
     2701 cttatacgga tcgtaccatc cgaacctata tcaaaaaatt aatttccgaa atatccgagg
     2761 aagaaacagg ttttgcgatt ttatccaaac aaggttatgg ctatcagctt cgaattagcg
     2821 atgaggaaaa ataccatcgt ttcttatctg aaaaccaact agtatttggg gtggattata
     2881 gtgatgcaga aaatcgccat aaacaaatcc tgaataaatt gatatttgaa gaagaatgta
     2941 tcttatttga tgatttggcg gaccagctgt ttgtcagtag atcaaccttg tctcatgatt
     3001 tcaagcacat tagggagcat cttgcttctt atggtttgag catcgagagt aagccctata
     3061 agggagtcta tgtggttggt gaagaacgtc aaaaacgtca cttcatcatg gactatttct
     3121 ttagtgaaca tttttatcag aatatccatc attttttatc caatgataaa agtctagcct
     3181 tacctctatc ttttgaagag ctaacaattg tagtcttaga tgagtgtcgt gatagtcagt
     3241 tgaaactatc tgattatatt atccaaaatt tagttattca tttaggttta gctatccaac
     3301 gctatcaaaa aggttttaca atttctcctg tcaccatcga taaggaaaag tatgctgaag
     3361 aattggcagt agctacaaag attgctaggc gattatccca tcgactggaa cctcagaata
     3421 ggtttcctga ggaagaagtg gtctacattg ctctacactt gatttcaaaa acacaattag
     3481 aggtggagaa gtcatcggac cgcctcttgt tgcgccaagc actttttgaa gttttagggc
     3541 gttatgatga tgaatatggt tatcaatttt cacatgattt ttccttgata gaaggtttgc
     3601 taacacatct ggaggttctc gtagaacgac tccgtcacaa tctccatatt gataaccccc
     3661 tacttgatga tattaaaaca acttatcatg atatcttcga tttgacacaa tcactaatgg
     3721 ctgaactttc agtttttcac tcttatagct tgtccgagtc agaaattgcc tatgtagctc
     3781 tacacttgat ggcttccttg gaacggcaaa aagaaaaata caaattaaat gttctggtta
     3841 tctgtgcaac aggctacggt agtgctcaga tgctgaaaaa taggattaaa aatgaacttg
     3901 ggcaacaggt gtccatatca gatgtcatcg gttactatga tttagataat caaaagttgc
     3961 aggggataga tgtgataatg tcaaccatcg acttatctgg tttggtgttt aaggtccctg
     4021 ttataactgt cagtgtcttt ttaacggatc aggaagttaa ggaagttaaa caacgattgg
     4081 cggccttgag acctagtctc caaaaaccac aggtagtgga aaaagaaagt aacttggaga
     4141 aatactttga tcagtacttc tcagaacaac gatttttagt tgttgagtca gctgaaaaag
     4201 aaatgttatt aaagcaaatg atttcacagt tggagagcga aggtcttgga aatcaccagg
     4261 aattttataa attaattgag gcgcgtgaaa gcttgagtac attggtattt gataaagata
     4321 tagctgttcc tcacccccta aaacccatta gcgaaaagca catgatttct gttgcggtta
     4381 taaaaaatgg tctatattgg gaagaaggct atgggcagat tagattggtt ttcttagtga
     4441 gtccatctat atatacaaat gaaggtctat caaccattac caatcgattg gtagatttgg
     4501 tagatttacc agaagtcaag aaagacataa taaactctcc tgattttgaa acattcaaac
     4561 acgttttttt acaaagagaa tagaaggtga catatgaata cagaagaatt acaaatggct
     4621 gcatttggga tcatcctcag tagtggcaat gcaagaagtg ttatccacga agcttttgct
     4681 gctatgagag aaggtgatta tgataaggca gaagagttat tggaagccgc caatgctgac
     4741 atgcttgaag cccaccattc tcaaacgggt ctcctacagg aatacgcaag cggtactgaa
     4801 gtgaaggtag agattattat ggttcatgcg caagatcatt tgatgacaac aatgacttta
     4861 cgtgaggtag cgcttgaaat gttagctttg tatcgtaaag ttggttagaa agaggatatg
     4921 ggatgagtaa gggaatggca agtaaaaagc tacagaaaac accagaacaa ttaaaacaag
     4981 agtctaaacg caaaagtcag ctctttaatc gctatatgct gtttcgttat agtttagcag
     5041 tgttcttctt tgcaaatcta tactggcttc tggttcaatt atttcaacca agtttgtatc
     5101 taatcctgcc ctcgcttatg ctgattgcaa taatcattgc gacggcagaa caatttaagt
     5161 tgtatagtgc tgaggagtct cgattgacaa agacagaatt tgtattaagg gcacaagcaa
     5221 tcttgcaagg gttaattgtg gttttagtga ttttgggtca tatctcaacc ctctttccaa
     5281 ctttttcaaa tcatatatct gctaaactct ttgttattgc cttgcagttg ttaggtcttg
     5341 ctttagttgt tctcaatata aaaaggttgg agcaggtaag gcaaaatacg gataaatact
     5401 acctacgttt tcaaataata agaaaatatc tttaaaattt taggaggtct tctcatgga
//
LOCUS       DASFRC010000149         5418 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.149, whole genome shotgun sequence.
ACCESSION   DASFRC010000149 DASFRC010000000
VERSION     DASFRC010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5418)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5418)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5418
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.149"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            152..1414
                     /gene="purD"
                     /locus_tag="U1087_001841"
     CDS             152..1414
                     /gene="purD"
                     /locus_tag="U1087_001841"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009660198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HEM4756286.1"
                     /translation="MKLLVVGSGGREHAIAKKLLESEQVEQVFVAPGNDGMTLDGIKL
                     VNIGISEHSALINFAKENDVAWTFVGPDDALAAGIVDDFEQAGLKAFGPSRLAAELEW
                     SKDFAKQIMVKYGIPTAAFGTFSNFEEAKAYIEEQGAPIVVKADGLALGKGVVVAETV
                     EQAVEAAREMLLDNKFGDSGARVVIEEFLAGEEFSLFALVNGDQFYILPTAQDHKRVF
                     DGDQGPNTGGMGAYAPVPHLPQNVVDTAVDTIVKPILEGMIAEGRSYLGVLYAGLILT
                     EQGPKVIEFNARFGDPETQIILPRLTSDFAQNIDDILYKRPTQLTWLDSGVTLGVVVA
                     SNGYPLDYEKGVELPAKTEGDITTYYAGARFADNSRALLSNGGRVYMLVTTADTVQEA
                     QEKIYSELKNQDTTGLFYRTDIGSKAVK"
     gene            1440..1928
                     /gene="purE"
                     /locus_tag="U1087_001842"
     CDS             1440..1928
                     /gene="purE"
                     /locus_tag="U1087_001842"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HEM4756287.1"
                     /translation="MNIPISIIMGSSSDWKTMKKAADVLDKFGVAYEKKVVSAHRTPD
                     LMFRHAEEARERGIKVIIAGAGGAAHLPGMVAAKTTLPVIGVPVQSRALSGVDSLYSI
                     VQMPGGVPVATMAIGEAGATNAALTALRILSIEDQTIADQLAAFAKEQEKIAEAMTDD
                     LI"
     gene            1915..3000
                     /gene="purK"
                     /locus_tag="U1087_001843"
     CDS             1915..3000
                     /gene="purK"
                     /locus_tag="U1087_001843"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HEM4756288.1"
                     /translation="MTSSKTIGIIGGGQLGQMMAISAIYMGHKVITLDPAADCPASKV
                     SEVIVAPYHDVAALKQLAERCDVLTYEFENVDADGLDAVIKDGQLPQGTDLLRISQNR
                     IFEKDFLAKKAGVQVAPYKVVTSSLDLEGLDLSKNYVLKTATGGYDGHGQKVIREAAD
                     LEAASQLANSTECVLEEFVNFDLEISVLVSGNGSDYTVFPVQENIHRNNILYKTIVPA
                     RISDELAEKAKTMALQIADKLHLAGTLCVEMFVAGQEILVNEIAPRPHNSGHYSIEAC
                     DFSQFDTHIRGILGEPLPPIRLLSPAVMINVLGQDMEAVQTFLQENPTAHAHFYGKLE
                     AKHNRKMGHVTVLTEDVEVGFRQDEIR"
     gene            2987..3910
                     /locus_tag="U1087_001844"
     CDS             2987..3910
                     /locus_tag="U1087_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4268 domain-containing protein"
                     /protein_id="HEM4756289.1"
                     /translation="MKLDRLKEVDVREIWKHEQYDFSEWLSRTENIELLSDEIGLTLT
                     EIDKEVFVGSYRCDLVAIDETTGIKVIIENQLELTDHDHLGKIITYASGLDAEVVIWI
                     VKKAREEHRSAIEWLNNNTTKNISFFLIEIHAYQIGSSMPAPKFVLVEKPNDFTKLAK
                     GNNHGGDLSKAQAERLYFWTQFNNVVATKNKPFNVRKATTDHWYDVAIGTSEAHISIT
                     LVNKSKSVGIEIYINNNKELFDKLSSHADEIHEELGFEMEWKRLDNRKVSRIIYYIKG
                     LDFENHDNYNDLIDEVINKVIILRDVVKKYI"
     gene            3945..5237
                     /gene="purB"
                     /locus_tag="U1087_001845"
     CDS             3945..5237
                     /gene="purB"
                     /locus_tag="U1087_001845"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEM4756290.1"
                     /translation="MIERYTRPEMGNIWSEENKYKAWLEVEILADEAWAELGEIPKED
                     VALIREKATFDIDRILEIEEETRHDVVAFTRAVSESLGEERKWVHYGLTSTDVVDTAY
                     GYLYKQANDIIRRDLENFTNIIADKAREHKYTIMMGRTHGVHAEPTTFGLKLATWYSE
                     MKRNMERFDVAAKGVEAGKISGAVGNFANIPPFVEEYVCGKLGIRPQEISTQVLPRDL
                     HAEYFSALALIATSIERMATEIRGLQKSEQREVEEYFAKGQKGSSAMPHKRNPIGSEN
                     MTGLARVVRGHLVTAFENVALWHERDISHSSAERIITPDTTILINYMLNRFGNIVKNL
                     TVFPENMKRNMESTFGLIYSQRVMLSLIEKGMTREEAYDLVQPKTAQSWDNQVDFKPL
                     LEADERVTAKLSQEEIDELFNPDYYAKRVDDIFERLGL"
BASE COUNT         1521 a         1178 c         1357 g         1362 t
ORIGIN      
        1 aagaaatatg taccgcctaa cgaaggtgaa gccatcatgg ctgtcttgcc cagcctcttt
       61 tccattcccg aacgttcttc tgttcgtcct atcaaaatcc gtctgttttt gctatactgt
      121 ttatataaaa tccgtttttg aggtgtaaga aatgaaactt ttggtcgttg gatctggtgg
      181 tcgtgaacat gctattgcaa agaaattgtt agagtctgag caggtagaac aggtctttgt
      241 tgctcctgga aatgacggaa tgaccttgga tggtatcaag ttagtcaata tcgggatttc
      301 cgaacattct gccctgatca actttgctaa ggaaaatgac gtagcttgga cttttgtggg
      361 tccagatgat gctctggcag caggtatcgt tgatgatttt gaacaggcgg gactaaaagc
      421 ttttggcccg agtcgtctag ccgcggagct ggagtggtca aaagattttg ccaaacaaat
      481 catggtcaaa tacggcattc caactgcagc ctttggcaca ttttccaact tcgaagaagc
      541 caaggcctac atcgaagagc agggggctcc aatcgtggtt aaggcggacg gcctggcact
      601 gggcaagggt gtagtcgtgg cggaaaccgt cgagcaggca gtcgaagcgg ctcgggagat
      661 gctcttggac aataagttcg gcgactcggg tgcccgtgtg gtcatcgaag agttcttggc
      721 gggcgaggag ttttccctct ttgctctggt caatggcgac cagttctata ttctgccgac
      781 agcccaggac cacaagcgtg tctttgacgg cgaccagggt cctaacacag gcggtatggg
      841 ggcttacgct cctgttcccc acctacctca aaacgtggtg gacacagcgg ttgacaccat
      901 tgtcaagcct attcttgagg gcatgattgc ggaagggcgg tcttatctgg gcgtgctcta
      961 tgctggtttg attctgacag agcaaggtcc caaggtcatc gagttcaacg cccgttttgg
     1021 cgacccagaa acccagatta tcctgcctcg tctgacctcc gactttgctc agaacatcga
     1081 tgacattctc tacaaacgcc cgacacagct gacttggctg gatagtggcg tgacgctggg
     1141 cgtagtcgtg gcatcaaacg gctaccctct ggattacgaa aaaggtgtag agttaccagc
     1201 gaagaccgag ggcgacatca cgacctacta tgcaggggct cgttttgcgg acaatagcag
     1261 agcactgctc tcaaacggcg gtcgggttta tatgctggtc accacagcag acaccgtcca
     1321 agaagcccaa gaaaaaattt actcggagct gaaaaatcaa gatacgacag gcctctttta
     1381 tcggacagat attggaagta aggcagtgaa ataagggaca aagaaaagga aagacaagta
     1441 tgaatattcc aatttccatc atcatgggtt ctagttctga ctggaaaacc atgaaaaaag
     1501 cagccgatgt gctggacaaa tttggcgtag cctatgaaaa gaaagtggtc tctgcccacc
     1561 gcacaccaga cctcatgttc cgtcacgccg aagaagcacg tgagcgtggc atcaaggtca
     1621 ttatcgcagg agcgggcggt gcggctcatt tgccaggtat ggtagcagcc aagactaccc
     1681 tgcctgtcat cggtgttcca gtccaatctc gtgcccttag cggtgtggat tcgctttatt
     1741 ctatcgtgca aatgccaggc ggtgtgcctg ttgcgactat ggcgattggc gaagctggtg
     1801 ccacaaacgc agccctgaca gctcttcgca ttctctccat tgaagaccaa accattgcgg
     1861 atcagctggc agcctttgcc aaggaacagg aaaaaattgc ggaggcgatg acagatgacc
     1921 tcatctaaga caatcggaat tatcggcggc ggtcagctag gtcagatgat ggctatttcc
     1981 gctatttaca tgggccacaa ggtgatcacg ctggatcctg cggcggactg cccggcctcc
     2041 aaggtcagcg aggtcatcgt cgctccctat cacgatgtgg cggccctcaa acagctggcg
     2101 gagcggtgcg atgtcctgac ctacgagttt gaaaatgtcg atgccgacgg actggacgcg
     2161 gtcatcaagg acggccagct tcctcagggg acagacctcc tccgcatttc ccagaaccgc
     2221 atttttgaga aggatttttt ggcaaaaaaa gctggcgtgc aagtcgcccc ctacaaagtt
     2281 gtcacatcta gcctagacct agaaggtctg gacctcagca aaaactacgt tttgaagaca
     2341 gctactgggg gctatgatgg acatggtcag aaggtcattc gagaagccgc ggacttggag
     2401 gcggctagtc agttagccaa ctctaccgag tgtgttttgg aagagtttgt gaatttcgac
     2461 ctggaaatct ccgtccttgt gtctggcaat ggctccgact acaccgtctt tcctgtgcag
     2521 gaaaatatcc accgcaataa tattctttac aagaccattg tgcctgctcg tatttctgat
     2581 gaacttgctg aaaaagccaa aactatggcc ctgcaaatcg cagacaaact ccatttggca
     2641 ggcaccctct gtgttgagat gtttgtggca gggcaagaaa ttcttgtgaa tgaaatcgct
     2701 cctcgcccgc acaattcagg acattattcg attgaagcct gtgatttttc acagtttgac
     2761 acccatatcc gaggcatttt aggggagccc ctgcccccta tccgcctgct ttctccagct
     2821 gttatgatca atgtcctcgg acaagacatg gaagcagtcc aaacctttct tcaagaaaac
     2881 cctaccgctc atgcccactt ttatggtaaa ctagaagcaa agcacaatcg caaaatggga
     2941 cacgtgacgg tgttgacgga agacgttgag gtgggattta gacaagatga aattagatag
     3001 gctaaaggaa gtagatgtta gagaaatctg gaaacatgag cagtatgatt tctcggagtg
     3061 gctgtctagg acagagaata tcgaattact gagcgatgag ataggactga ctcttaccga
     3121 gattgacaag gaagttttcg ttggctcata tagatgcgat ttagtggcta ttgatgaaac
     3181 aacgggaata aaagtgatta tagaaaacca attagaatta acggatcatg atcatcttgg
     3241 taaaatcata acctacgcat cgggcttaga tgctgaggtt gtcatttgga ttgtaaaaaa
     3301 agctagagaa gagcatagga gtgctatcga gtggcttaac aataatacaa cgaaaaatat
     3361 atcttttttc ctaattgaaa tccatgctta tcaaataggt agttcaatgc ctgctcctaa
     3421 atttgttctt gttgagaaac cgaatgattt tacaaagcta gctaaaggaa ataatcacgg
     3481 tggtgatttg agtaaagcac aggcggaacg tttgtatttt tggactcaat ttaataatgt
     3541 agtggcaact aaaaataaac cgttcaacgt tagaaaagct actacagacc actggtatga
     3601 tgttgctatt ggaacaagtg aggctcatat ttctattacc ctagtcaata aatcaaaaag
     3661 tgtagggatt gaaatctata taaacaataa taaggaatta tttgataagc tatcatcaca
     3721 tgctgatgaa atccacgaag aacttggatt tgaaatggaa tggaagaggt tagataatag
     3781 aaaggtttcc aggattatat attatataaa gggtctggat tttgagaacc atgacaatta
     3841 caacgattta attgacgaag taattaacaa agttatcatt ttgagagatg tagttaaaaa
     3901 gtatatctaa aaaaataaat agatagggaa aaaggaaaca caacatgata gaacgctaca
     3961 cacgccctga aatgggcaat atttggagtg aagagaacaa gtacaaggct tggttggagg
     4021 tggaaatcct cgctgatgag gcttgggctg agttgggtga gattcccaaa gaagatgtgg
     4081 ccttgattcg tgagaaggcg acttttgaca tcgaccgcat tttagagatt gaagaggaaa
     4141 cccgtcacga tgtggtggct tttacgcgtg cggtttcgga aagtcttggt gaggaacgca
     4201 agtgggtcca ctacggtctg acttcgaccg acgtggtgga tacggcttac ggctacctct
     4261 ataagcaggc caacgacatc atccgtcgtg accttgaaaa ctttaccaac attatcgccg
     4321 acaaggcgcg tgagcacaag tacaccatta tgatgggccg gacccacggt gtccatgcgg
     4381 agccaacgac ctttggtctg aagctcgcaa cttggtacag cgaaatgaaa cgcaacatgg
     4441 agcgttttga tgtggcggcc aagggtgttg aagctggtaa aatttcaggt gcggttggaa
     4501 actttgctaa cattcctcca tttgtggaag agtatgtttg tggcaaattg ggcattcgtc
     4561 cgcaggaaat ttctacccag gtccttcctc gtgacctcca cgcagaatat ttctcagccc
     4621 tagccttgat tgcaacatct atcgagcgta tggcgacaga aatccgtggg ctacaaaaat
     4681 ctgaacaacg cgaagtcgaa gagtatttcg ccaaaggcca aaaaggcagc tctgctatgc
     4741 cccataaacg caaccctatc ggctctgaaa atatgaccgg tctggctcgt gtggtgcgtg
     4801 gtcacttggt gacggctttt gagaatgtgg ctctctggca cgaacgcgat atttcccact
     4861 cgtcagcgga gcggattatc acgccggata cgactatcct catcaattat atgctcaacc
     4921 gttttggcaa tatcgttaag aacttgacgg tcttccctga aaatatgaaa cgcaatatgg
     4981 agtcaacctt tggcttgatt tacagccagc gtgtcatgct cagtttgatt gaaaaaggca
     5041 tgacccgtga ggaagcctat gatttggtgc aaccaaaaac tgcgcagtca tgggataatc
     5101 aagtggactt caagcccctt ctcgaagcgg atgagcgtgt gactgccaaa cttagccagg
     5161 aagaaatcga tgaactcttc aacccagact actatgctaa gcgggttgat gacatctttg
     5221 aacgacttgg attataaaaa atcaaaattc tttggatttt ccagagaatt tttttattta
     5281 cttgcgaata aataggtgaa ggggaaaaca agctccctcc gctagacaat cattcgtgag
     5341 taaaaataaa ccatttttta caaaagttta cgaatagata agtgtggggg aagcctgctc
     5401 acaacttatt caaaacaa
//
LOCUS       DASFRC010000150         5377 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.150, whole genome shotgun sequence.
ACCESSION   DASFRC010000150 DASFRC010000000
VERSION     DASFRC010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5377)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5377)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5377
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.150"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            1..3098
                     /locus_tag="U1087_001846"
                     /pseudo
     CDS             1..3098
                     /locus_tag="U1087_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636992.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
     gene            3095..3736
                     /locus_tag="U1087_001847"
     CDS             3095..3736
                     /locus_tag="U1087_001847"
                     /inference="COORDINATES: protein motif:HMM:NF012651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEM4756291.1"
                     /translation="MNFEEMKSTLENMLKENYADFTKAIISIEKDISDPDLLEQVYQA
                     YMDDDSISGLLHSNIDAIIGAIESNKSQLSTDNVELIGNVTKNVEVKVIPRGDGKDFK
                     VANFSIARNDDQGNTHFTNVTAYNGRADFAEQLKKGDFVQLTGQMKYDEYEGKLFSNL
                     VVKNIKILKTRKKFLEEKVSKEEKPSTLGALKEYSQQTKSEQTKPKLDKGMEL"
     gene            3800..4339
                     /locus_tag="U1087_001848"
                     /pseudo
     CDS             3800..4339
                     /locus_tag="U1087_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001842569.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CpXC domain-containing protein"
     gene            5143..>5377
                     /locus_tag="U1087_001849"
     CDS             5143..>5377
                     /locus_tag="U1087_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019780896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose/sucrose transporter subunit IIB"
                     /protein_id="HEM4756292.1"
                     /translation="MSSNKETAKQIIQIIGEDNITFMTHCATRLRMNVADENKVDLNA
                     LDQVSGVIKAQIKSGQLQVIIGAKVAQVFEEASK"
BASE COUNT         1868 a          804 c         1143 g         1562 t
ORIGIN      
        1 tctatacgaa atcgtgagta tgatgggcaa tatttatccc ttgaaggaat gacagcagat
       61 ataagtttac gtcctcatca aaaaaatgct attgcgagga cactatacgg aggtaataca
      121 cttctagctc atgttgtcgg agcagggaaa acgttcgaga tggttgccag tgctatggaa
      181 agtaagcgtc tgggcatgag caataaagct ttgtttgttg ttcccaacca cttgacggaa
      241 caaatgggac gggagtttat ggagttgtat ccagctgcca atatcatggt ggccacgaaa
      301 aaagattttg aacctgccaa tcgaaaacgt tttgttggta ggatagagac tggtgaatat
      361 gatgcagtta ttattggaca tagtcaattt gagaagattc caatgagtaa ggaatatcag
      421 gagcagcact taaaacgtca aattcaagat atagttgagt ttattgaaga atataagtac
      481 caaagagacc aaaactttac tgtcaagcaa cttgagggaa ctaagaagaa attagaagcc
      541 aaactaaaaa aattaaatga tgatttccgt aaggatgatg ttgtcacctt tgaagaattg
      601 ggagttgaca aactatatat tgatgaagct cataactaca aaaatcttta tctttatacc
      661 aaaatgcgaa acgtggcagg aattggccaa actgaagcta tgaaatcttc agatatgttt
      721 atgaagtgtc gttatttgga cgagttgaca ggtggaaagg gtgtcgttat ttggacgagt
      781 tgacaagtgg aaagggtgtt gtttttgcga caggtacacc agtgtcaaat tcgatgagtg
      841 aactctacac aatgcaacgt tatctccaat atgatgacct ggagaaaaaa ggtttacacc
      901 actttgattc ctgggcttct acattcggtg aaacagttac tgccatcgaa ctatctccag
      961 agggtgactc ctatcgtagt aagacacgat tctcaaaatt ttataatttg cctgaactca
     1021 tgtcctttgt taaagaaatg gctgatatta aaactgcaga ccttttgaat ttaccaacac
     1081 cccaagccca ttacgaaaca attttaacca gaccaacgaa ccatcagaaa gaaattttaa
     1141 agactttatc tgaacgagct gataaggtac gtaatagaaa agttgagtct catgaagata
     1201 atatgttacg aataacaaat gatggaaaaa agattgcctt ggatcaacgg ttaatcaata
     1261 ccttactacc tgatgatccg gaaagtaagg tcaatgtctg cacaaaaaat atttttgcta
     1321 tttgggaaaa atcgagcgaa caacggtcag cacagctagt tttttgtgat atgtctacac
     1381 ctaaagggga tggaacattc aatctttatg atgatatgaa aggcaagtta attgaactag
     1441 gtatcccaga aaatgaaata gcatttatac atgatgcgaa taatgaaaag caaaatgcgg
     1501 aactctttgc caaggtcaga agtggagatg ttcgcatttt atttggttct acgtcgaaaa
     1561 tgggagcagg aacaaacgtt caaagtaaac taatagcctt acatgattta gatattcctt
     1621 ggaggccagc tgatttggag caacggtctg gtcgtatcgt gcgtcaaggg aatgaaaaca
     1681 aggacgtcta tatctaccgt tatgtgacag agaatacctt tgatgcgtac ctttggcaga
     1741 ccattgaaaa taagcaaaag tttatctccc aaattatgac ctcaaaaaca cctgtgcgag
     1801 tggctgatga tgttgatgag aatactttga actatgcaga aattaaagca cttgcgactg
     1861 gtaatccact tattaaagaa aagatggatt tagatgttga agtatcgaag ttacgaatgt
     1921 tggaatccaa ttataaatct aacctttatc agttggaaga taaaattgca aaacattatc
     1981 catcagagat tactcgatta aaagggcaaa ttgaaaaagt aaatgaagat attaaaagac
     2041 gtgagcctaa agtacaaggt gatggcctat ttaacggaat ggagatatta ggtaagacat
     2101 attctgacaa aaaagaagca gtagaagaat tgatgaaaat tttaccattg gttccagctg
     2161 agggcagtat gcctattggc aactatcgtg gatttgaagt ttcagcattc ttcaatcaga
     2221 ttgctcaagc aatggatttt gtgattgagg gaaatctttc ttacaatggt cattttggtg
     2281 aaagcccaga aggcaatatt cagcgtttag acaacgtttt ggatcgaatt gatgaagaac
     2341 tatccaagct agaaaataga ctgtcagatg tccaatacaa gctccaggta gcaaaagaag
     2401 aggtgacaaa accatttgaa aaggcagata tgttaaaaga aaagaccttg cgtttagcag
     2461 aggtcaatcg aatcttggac atgggcgaag tagaagaact ggataatccg aatcccttac
     2521 ttgaagatgt taaagcagcg attgttgact ttttggatcg tgagtatggc ttctgcgaag
     2581 aatcaagtca tagtaacgta gaacaattca atgatatatt ctcaactgga gatttagtct
     2641 acttagccaa gagcaaaagt aacgttggtg gatatgatat tgagtatagt gtagacttgt
     2701 ccaatttttc ttggaaatta accttcgcag attcagatat tcgtacaggt cagtttgatg
     2761 gaagtacacc agaggagcaa gcccagcatt ttaaattatt tttagaacat tcaaccaaag
     2821 acgatttact atcaattgat gagaaaacaa cctgtcaaat gctcggttta ccttatacga
     2881 gagagtcgct tgatcatgac atggataacg atggaattgc agaccgttat gaccatgata
     2941 ttaaggatag tgatgccttt gaatcaactt atgatgtcga tggagaggaa aaacgacctt
     3001 ccacattagc acaaattcaa gcttttaaag ctgaagttga agaacgtgac tacaaaagtc
     3061 agaagaaaga agaaatagaa gaggagcaag taatatgaat tttgaagaaa tgaaatcaac
     3121 tttagaaaat atgttgaaag aaaactatgc cgactttacc aaggccatta tttcaattga
     3181 aaaggatatt tcagacccag acctgttgga acaagtctac caggcctata tggatgatga
     3241 ttcaatttca ggtttgttgc attccaatat agatgcgatt attggtgcta tagagtccaa
     3301 taaaagtcag ttgtctactg ataatgttga attgattgga aatgtaacaa aaaatgtaga
     3361 ggttaaagtt attccaagag gagatggaaa ggattttaaa gttgctaatt tttcaattgc
     3421 tcgaaatgat gaccaaggaa atacacactt taccaatgtc acagcctata acggacgggc
     3481 tgactttgca gagcaattaa agaaagggga ttttgtccag ttaacaggtc agatgaagta
     3541 tgatgagtat gaaggcaaac tcttcagtaa ccttgttgtt aagaatataa aaatcttaaa
     3601 aacgagaaag aaattcctgg aggagaaggt ttcgaaagaa gagaaacctt caactttagg
     3661 agcattgaaa gagtattccc aacaaacaaa atcagaacaa actaaaccta aactggataa
     3721 aggaatggag ttatgaaata agctagactt ccgattttgg aggtctagct tattttttcg
     3781 gtctggagta aagtgttatg agattgtttc tgctatttta gactgggatt tctttaagtt
     3841 tacttgccat aactgtaacc acaaggtgct aattgattac ccaacagtcg tattagatga
     3901 agaacaaaaa acaattattc agtattgtgc agatggtaat gttgaagtgc tttcaatgca
     3961 aatatgctct ttgatttctg agggtgtcaa tctcagtgag tatagaattc gagtagtttc
     4021 ggatttagag tctttcgttg agaaggtaca gattgtttca gcagggtatg atgatagagc
     4081 aattgagctt atgaagtata tgaatagtcc tcttgaggat ggtgatattc agtttaacta
     4141 tgaacatatg gttttcacca aggttggaca tgaaagttat caatttatgt ttattaataa
     4201 ccagactgca gtagcatctc tcgacttttc tcaagaacaa tatgagtact accttgctga
     4261 tgttgaggac ctagaaatta atacatatta catagactct agatgggcgg aattattctc
     4321 tcgtaccagt ttgacataaa aatcaaaatc tattttcaag tataaatggc ctaatcatta
     4381 gttaggtcat tttatcttct aatttagaaa aacgtagtta atatatataa ttattatgta
     4441 gatttctaga aaggaggtaa aaccaatgga aagacagaat tctaaaataa ctcgtcaaca
     4501 gtagaaaatt tgagatgcat ttgtatctga gagaactgtt gaaattattc cttcaaagcg
     4561 agagttcact gatgttaaaa ataagaagtt gcgtgttgct gcctattgtc gagtaagtac
     4621 ttttgatgaa tctcagtcag gtagttttga gcttcaaaaa caaacttata ctgaaagaaa
     4681 catttgtttt taggcttttt gggatgggga agtaacagag tgagagtaaa cgctgagtgt
     4741 gttgctctgc tcgtaaaatc ctagaaacct tggaacgaaa gggataatga aaagccttaa
     4801 ttgcaaggct ttttgtattg aggtggggaa gtattagaga gagtaaattt ttggagtggg
     4861 tagaagtgat agctagaaat tatcagtttc tattttcatt taccctgtgg gtacgtgttt
     4921 gtttccattt acaaggagtt tgcgggaata gagacgtatc cacctttttt atccaaataa
     4981 atactaatac tttacaattt ttagacaaac tgttgttttt tgtaaattag tatttttcat
     5041 ttttaacaaa aatttccaat ttttgaaaat cacttgaaag cgcagtcata ttacgttatc
     5101 atgtactcaa acctagggaa atttatatag gaggtgctct aaatgagcag caataaagaa
     5161 acagcgaagc aaattattca aataattggc gaagataata taacgtttat gacccactgt
     5221 gcaactcgat tacgaatgaa tgttgctgac gagaataaag tagatttgaa tgctcttgat
     5281 caggtatctg gtgtaataaa ggcgcagata aagagcggac aactacaagt tattatagga
     5341 gcaaaagtag ctcaggtatt cgaagaagct tcgaagc
//
LOCUS       DASFRC010000151         5367 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.151, whole genome shotgun sequence.
ACCESSION   DASFRC010000151 DASFRC010000000
VERSION     DASFRC010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5367)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5367)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5367
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.151"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            76..507
                     /locus_tag="U1087_001850"
     CDS             76..507
                     /locus_tag="U1087_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEM4756293.1"
                     /translation="MDTKFSVALHILTMISESKEILSSQALAESVGTNASYIRKVIAL
                     LKNAGLITSHQGRSGYQLSKSPKDISLLEIYLATQEVEHIRLFQIHQNANLTCPVGQH
                     IEGAMVPIFSSVEQELEHKLSRQSLDNVIDNLYQSAQETRI"
     gene            587..1588
                     /locus_tag="U1087_001851"
     CDS             587..1588
                     /locus_tag="U1087_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HEM4756294.1"
                     /translation="MKVAQHTSYNKNNITLNLTEIAKPQIKPHQVLVKVTAAGVNPLD
                     NMISRGDVKLIVPYKLPQTAGNEVVGLVEEVGSSVTTFAAGDRVFGRLPLDNIGAFAE
                     YVAVDAQALAKVPAYLTDEEAAAVPLTALTIMQALDLMGAQSGKTIFISGGTGGVGGM
                     AIPIAKAKGLTVITNGDGASAERVLSLGADRFIDYKTEDYTKTLSNVDYVLDTLGGAE
                     TEKQMSIMKKGGQLVSLRAMPNGEFAKRMNLPKWKQILFGLAGRSFDKMAKKYGVHYH
                     FIFVESNGRQLQEVADIFSKLEIKPSIDTVYPFEEVNVALDKVANGRSRGKTVLSFN"
     gene            1615..2460
                     /locus_tag="U1087_001852"
     CDS             1615..2460
                     /locus_tag="U1087_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM4756295.1"
                     /translation="MSYITTKNQYITVSNNKIAYRELSKGKSDIPLVMLVHLAATLDN
                     WDPKLLDLLAEKHHVIVLDLPGVGASQGKVAPTIPGMAEQAASIIKALGHEKINLLGL
                     SMGGFIAQEIVRLDSQLVNRLILAGTGPRGGFEVDKVTGKTFRYMLKAGLERVDPKRY
                     IFYNHDEAGRLEAEKVLGRMGQRSAAHADKDMNVPGFLTQLKAIKRWGREPQDDMTFI
                     TQPTLIVNGDKDMQVPTENSYTMHEKIKNSQLIIYPNAGHGSIFQNAEEFSKALLAFL
                     EETNA"
     gene            2453..3322
                     /locus_tag="U1087_001853"
                     /pseudo
     CDS             2453..3322
                     /locus_tag="U1087_001853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637456.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
     gene            3315..4526
                     /locus_tag="U1087_001854"
     CDS             3315..4526
                     /locus_tag="U1087_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavin oxidoreductase/NADH oxidase family
                     protein"
                     /protein_id="HEM4756296.1"
                     /translation="MTKILLENLQLPNGQVLDNRFFKSAMSETLADSQGAPSDDLIAL
                     YDFWAKQGMGVLVTGNVMVDGRYRGEPGNVVLDSDAHLAQFQKWAAIGKKNGVPIWLQ
                     LNHPGKQMYRSINQTPIAPSAIPISGGSASAFRPPREMTVFDIKEARDKFIAAGLRAK
                     AAGFTGVQLHAAHGYLINQFLSPADNQRTDRYGGSLDNRMRFLVEVYQGLRDKVGSDF
                     TIALKLNASDFKEEGFGFEDCKRVVKTMSDLGIDLIEISGGNYETPVFGSEYENGAGF
                     VTYALALADLTSVPIVSTGGFRKVAQMEEAIKDGVSMIGLARPFVLRPSLVNDHRKVG
                     DVQLTTPRLTTGLPKLDKALGPIIGVSYYEAQMKRLAKGKSVTVSQHAWPYLLQTVKA
                     HGLSALKPRRK"
     gene            4681..4929
                     /locus_tag="U1087_001855"
     CDS             4681..4929
                     /locus_tag="U1087_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756297.1"
                     /translation="MSFLEANEKIAEKVVGAHKAIEKTVVGGYKATEKAAVSGFNTIS
                     DKFIGAFFTKDNETVEEAKARMSKMDFNQPNSSKGDDK"
     gene            4985..5353
                     /locus_tag="U1087_001856"
     CDS             4985..5353
                     /locus_tag="U1087_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009854296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756298.1"
                     /translation="MKKRDFISLIAYTVSLLVLALGMCFYTLPEWEMTTLGMPLSVAG
                     LLLLALSWVLQRKLAGKGASKFDWKQIVKVIYCVFALLVFGGGFALVTTGNFVLGLVL
                     GLVGLILVIGMIPVTVGLKN"
BASE COUNT         1585 a         1098 c         1261 g         1423 t
ORIGIN      
        1 caaaagactt gccaagaagt ctagcttatg gtaagcttgt tcttgtaaat gatacaagga
       61 cagaaaggaa accagatgga tacaaagttt tcagtagccc ttcatatact gaccatgatc
      121 agtgagagta aggaaatact tagctcgcaa gccttggctg agagcgttgg caccaatgct
      181 agctacatcc gtaaggtgat tgcacttttg aaaaatgcag gcttaatcac ttcgcatcaa
      241 ggacgatcag gctaccaatt gagcaagtcc cctaaggaca ttagcttatt ggaaatctac
      301 cttgcgacgc aagaagtgga gcatattcgc ctatttcaga tacatcagaa tgccaatctc
      361 acctgtccag ttgggcagca tatagaaggc gcaatggttc ccatcttttc cagtgttgaa
      421 caagaactgg aacataaact cagtcgtcaa tccttagata atgtgattga taatctctat
      481 caatccgcac aagaaacccg aatctgacct cggtcagatt ttataaactc aaacatagac
      541 ttataagtga tacaggaaca aatcaaagaa tagaaaagag aagaacatga aagtagcaca
      601 acacacatct tataacaaaa acaacatcac ccttaacctt acagaaattg ctaaaccaca
      661 aatcaagccc caccaagtcc ttgtcaaagt gaccgcagca ggcgttaatc cattggacaa
      721 catgatctcg cgcggagatg tgaaattgat tgtcccttac aaattgccgc aaacggctgg
      781 caatgaagtg gttggcttgg tcgaagaagt aggctcaagc gtgacgacat ttgcagcagg
      841 tgatcgtgtc ttcggtcgtc ttccgcttga taatatcggt gcttttgctg agtatgtagc
      901 agttgacgct caagctcttg ctaaggttcc tgcctacttg acagatgaag aagcggcagc
      961 cgttcctctg acagctctga ccatcatgca ggcacttgac cttatggggg cacaatctgg
     1021 caagaccatc ttcatctcag gcggaactgg tggtgtcgga ggtatggcca ttccgattgc
     1081 caaagccaag ggcttgaccg ttatcacaaa tggtgatggg gcaagtgcag agcgggtgtt
     1141 gtcattgggt gcagaccgtt ttattgatta caagacagaa gattacacca aaacacttag
     1201 caatgttgac tatgtcttgg acacacttgg tggtgcagaa acagaaaaac aaatgtcaat
     1261 catgaaaaaa ggtggacagc tggtttccct tcgtgccatg ccaaatggtg aatttgccaa
     1321 gcgcatgaat ttgccaaaat ggaaacaaat cttgtttggc ctagctggtc gttcatttga
     1381 caaaatggca aaaaaatacg gtgttcacta ccatttcatt ttcgtagaga gcaatggtcg
     1441 ccaactgcaa gaagtagcag acattttcag caagctcgaa attaaaccgt caatcgatac
     1501 cgtttatcca tttgaagaag tcaacgttgc acttgataag gttgccaacg gtcgttcacg
     1561 cggaaaaacc gtcctcagtt tcaactaaaa aaataaaata tacagggaaa aatcatgtca
     1621 tatattacaa ctaaaaacca atacatcacc gtttcaaaca ataaaattgc ctaccgtgag
     1681 ctcagcaagg gcaagtctga cattcctttg gttatgctgg ttcacctagc cgcaaccttg
     1741 gacaactggg atccaaaatt gctggatttg ctggctgaaa agcaccatgt gattgttcta
     1801 gaccttcctg gcgtaggagc tagtcaaggc aaggtggctc cgactattcc aggaatggct
     1861 gagcaggctg cttccattat caaggctctg ggtcatgaga aaatcaattt gctgggtcta
     1921 tctatgggtg gctttattgc tcaagaaatc gttcgtctgg atagtcagct ggtcaaccgt
     1981 ttgattttag caggcacagg tcctcgtggt ggttttgaag tcgataaggt gactggaaaa
     2041 accttccgct atatgctgaa ggctggtttg gagcgtgtgg atccaaaacg ctacattttc
     2101 tacaatcatg atgaagcagg tcgtttggag gcagaaaaag tcttgggtcg catggggcaa
     2161 agaagtgctg ctcatgcaga caaggacatg aatgttccag gatttttaac tcagctgaaa
     2221 gctatcaaac gctggggaag agagccgcaa gatgacatga cctttatcac ccaaccaact
     2281 ctgatcgtca acggtgataa ggatatgcag gttccaacag aaaattctta taccatgcat
     2341 gagaaaatca aaaatagcca actgatcatc tatccaaatg caggtcacgg ctcgattttc
     2401 caaaatgcag aagagttttc aaaagcctta cttgcctttt tggaggaaac caatgcctaa
     2461 aaccatttta atcacaggat cgacagacgg gattggcaaa cacctagcca tgaaactagc
     2521 tagtgaaggt catgaagtga tcttgcacgg gtgaaatagc gaaaagctcc gtgtaaccct
     2581 cagtgatatt caactaaaaa caggaagtaa aaaaattcac gcctatcttg cagacttttc
     2641 caagttagca gatgtctatc gtttcagcca agagattaaa cgcgattttg agcagattga
     2701 tgtcttgtta aacaatgcgg gtgcttactt tggagatgcc cgtgtggcaa cggcagaaaa
     2761 tatcgagatg acctttatgc tgtctgttca agttccctat atcttgacga cggagttgct
     2821 gcccttgctg gaaaaagcag gaggcagggt cattcatacc tcgtccttca tgcaccattt
     2881 tgcacaaacc agaggcttgg attttggttt agagcagagc tattctgcag ccatggctta
     2941 caataatgcc aagctttaca ccatttggct ggcaatagct caggcagagg ccttagaaaa
     3001 gcaaggttca tctgtgaccg tcaatgccta ccatcctggc ttgattgcga caaatttggg
     3061 taatgatggg gtcaaacgca acctgagaag tcggattctc actcgtctga tgaaaccatt
     3121 ttccaaagat ttggatcagg ggattgaaac aggttactac ttaagtctgt caccagaagt
     3181 ggctggagta tcaggtcgtt attttgcgga gaaaaaagtg gcacgggtca gcttgaaagg
     3241 ctttgatgtg gcaaagagcc aagccttact agcctatctt gataagaaaa ttcaagtatt
     3301 taaggagagc tacggtgact aaaatcttgc tagaaaacct ccaactgccc aatggtcagg
     3361 tcttagacaa tcgctttttc aaatccgcca tgagcgaaac cctggcagat agtcagggag
     3421 ctccttcaga tgacctgatc gccttatatg atttttgggc caagcaggga atgggtgtcc
     3481 tagtgacagg caatgtcatg gtagatggtc gctaccgtgg tgagccgggc aatgtggtcc
     3541 ttgattcaga cgctcacttg gctcaatttc agaaatgggc agccattggg aaaaagaacg
     3601 gtgtgcctat ctggctccag ctcaatcacc ctggtaaaca gatgtatcgg tcgatcaatc
     3661 aaactccgat tgcacccagt gccattccga tttctggagg ctcagcttcg gcatttcgtc
     3721 caccgagaga aatgaccgtg tttgacatca aagaggctag agataaattt attgcagcag
     3781 gccttcgggc aaaagcagca ggatttacag gtgtacagtt acacgctgca catggttact
     3841 tgatcaatca gtttctctcg ccagcagata atcagcgaac ggaccgatat ggtggcagtc
     3901 tggacaatcg catgcgattc ttggtggaag tctatcaagg tctgcgtgac aaggtgggat
     3961 cagattttac catcgccttg aaattgaatg cttctgattt taaggaagag ggctttggtt
     4021 ttgaagattg taagcgtgtg gtgaaaacca tgtctgactt gggtatcgac ctgattgaaa
     4081 tttcaggtgg caattatgag acacctgttt ttggtagtga atatgagaat ggtgctggat
     4141 ttgtcaccta cgccctagcc ttagcagatt tgacttctgt tcctattgtt tcaacaggcg
     4201 gtttccgaaa agtcgctcag atggaggagg ctatcaagga tggtgtgtcc atgattggcc
     4261 ttgccagacc ctttgtcctt cgtccaagtc ttgtcaatga tcatcgtaaa gtcggtgatg
     4321 tgcaactgac aacgcctcgc ctgacaacag gtcttccaaa actggataag gcccttggtc
     4381 ccattatcgg tgtcagttat tacgaggccc agatgaaacg cttggccaag ggaaaatctg
     4441 tcaccgtcag tcaacatgcc tggccctatc ttctccaaac cgtcaaggca cacggcctgt
     4501 cagccttgaa accaaggagg aagtagaata aactagaaaa gatttgagag ttcatctcag
     4561 atcttttttc gatggattga gatgaaaaat ataaatccga cacttttgtt aaaaattgtc
     4621 gttctctaac agtcattatt tgggtaaact aaatacatca aatgaaagga ggtttgcttg
     4681 atgtcatttt tagaagcaaa cgaaaaaatc gcagagaaag ttgttggtgc tcataaggca
     4741 atagaaaaaa cggttgtggg aggctataag gcaacagaaa aagcagcagt ttcaggtttc
     4801 aatacaatct cagataaatt tatcggagca ttttttacaa aggataatga aacagttgaa
     4861 gaagcaaagg cccgcatgtc taaaatggac tttaatcaac ctaactcatc taagggtgat
     4921 gacaagtaag caagagtaga ttttcttgct aaccatacta aataataaga agaaaaggaa
     4981 tactatgaaa aaaagagatt ttatcagttt gattgcttat acggtgagtt tattggtctt
     5041 agctttaggg atgtgctttt ataccttgcc agaatgggaa atgactaccc tagggatgcc
     5101 cttatcggta gcaggtctgc tattacttgc actatcttgg gttctgcaga ggaagttagc
     5161 aggtaaaggg gcttctaagt ttgattggaa acagattgtt aaagtcatct actgtgtttt
     5221 tgccttgttg gtttttggtg gaggcttcgc ccttgtgaca actgggaatt ttgttctggg
     5281 tctagtccta ggccttgttg gccttatatt agtgattggg atgattcctg taactgttgg
     5341 cttaaaaaat taaagaaaac ctgaggg
//
LOCUS       DASFRC010000152         5289 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.152, whole genome shotgun sequence.
ACCESSION   DASFRC010000152 DASFRC010000000
VERSION     DASFRC010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5289)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5289)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5289
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.152"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            27..692
                     /locus_tag="U1087_001857"
     CDS             27..692
                     /locus_tag="U1087_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin lysis protein"
                     /protein_id="HEM4756299.1"
                     /translation="MKTFISKLMLVSTVVLLAACQSNQVKGGESSSASSQVSDGSSLQ
                     QASTIASSSETQASSVTTPELSEVYQSVIDRYQANMGQPAEAINQDEVSSYLSLLTSQ
                     GQEYSGIFYSLYDVNHDGTEELLLALDKSGEYVLIDLYTQLTDESLRLVDNFRNLGFE
                     IGPDALLRPLQDGTYLFEGDGIFRIYQYNAMIPGLKRISESDTNPETSPLLELKSLHW
                     VKL"
     gene            861..2012
                     /locus_tag="U1087_001858"
     CDS             861..2012
                     /locus_tag="U1087_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate-binding domain-containing protein"
                     /protein_id="HEM4756300.1"
                     /translation="MKTNLKKLLYSGVTLMSLGVLAACSSTSSSTTTSSSAATSQTSV
                     ATTSNNSTSSDSNSSTIDWSALPTTEVTLSNDGLKITEGGTYILTGSTTAGVTVETDA
                     NVRIILAGAEISSSDTAAINVINADNVELEIKDGTTNTVKDTSNHTDTNIEGAIHVEA
                     DLTITGNGSLTVEGNFQDGIVSTDDLVITAGTIKVTAVDDGIRGKDSLTINGGTINVT
                     AGGDGIKSTNDTDTTKGYTTITGGEITVKAGDDGIKAETALTIDGGTITVSESVEALE
                     GTNITINGGTIDVYGSDDAINAASTTSSEIFIKVTGGDLKVAVGSGDTDAFDANGDIY
                     ISGGTIAVTAPTSAFDFDGTAELTGGTVTVNGEQITQITATGPGGRGGW"
     gene            complement(2051..2710)
                     /locus_tag="U1087_001859"
     CDS             complement(2051..2710)
                     /locus_tag="U1087_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HEM4756301.1"
                     /translation="MEFDLFLMICNYIGTIAFAVSGAVKGFKKKLDIFGISLLGIITA
                     VGGGIIRDTMANRIPAALTDPTAIYLSLGVAISMYLIVINLKQDKPPGKKMIHFLSQT
                     NLIFDAIGLAIFALIGASTGISLQLNALTSGILAALTGVGGGIARDLLVNETPIVLKE
                     DVYAVLAFFSGVLYHLCVVNWKLPQIPTFITIFTISLIIRLLVIKYKINLPNMESKRK
                     V"
     gene            2942..3910
                     /locus_tag="U1087_001860"
     CDS             2942..3910
                     /locus_tag="U1087_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000258167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent dehydrogenase
                     E1 component subunit alpha"
                     /protein_id="HEM4756302.1"
                     /translation="MVSISKEQHLDMFLKMQQIRDVDMKLNKLVRRGFVQGMTHFSVG
                     EEAAAVGPIAGLTDEDIIFSHHRGHGHVIAKGIDINGMMAELAGKATGTSKGRGGSMH
                     LANVEKGNFGSNGIVGGGYALAVGAALTQQYLGTDNIVIAFSGDSATNEGSFHESMNL
                     AAVWNLPVIFFITNNRYGISTDISYSTKIPHLYQRAAAYGIPGHYVEDGNDVIAVYEK
                     MQEVIEYVRAGNGPAMVEVESYRWFGHSTADAGVYRTKEEVNEWKAKDPLKKYRKYLT
                     ENKIATDEELDAIEAQVAEQVEASVKFAQESPDPDISVAYEDVFVD"
     gene            4171..5166
                     /locus_tag="U1087_001861"
     CDS             4171..5166
                     /locus_tag="U1087_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000005088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HEM4756303.1"
                     /translation="MAETKVMALREAINLAQSEEMRKDEKVFLMGEDVGIYGGDFGTS
                     VGMLDEFGPKRVRDTPISEAAIAGSAVGAAQTGLRPIVDLTFMDFVTIALDAIVNQAA
                     KTNYMFGGGLKTPVTFRVASGSGIGSAAQHSQSLEAWLTHIPGIKVVAPGTANDAKGL
                     LKSSILDNNPVIFLEPKALYGKKEEVNLDPDFYIPLGKGEIKREGTDVTIISYGRMLE
                     RALKAAEEVAAEGISVEVVDPRTLIPLDKELIIESVKKTGKVILVNDAYKTGGFIGEI
                     ASIITESEAFDYLDAPIIRIASDDVPVPYANILENAVLPNVEKIKAAIYKQVNKG"
BASE COUNT         1637 a          996 c         1197 g         1459 t
ORIGIN      
        1 ccaaagatag agcacaggag gaagttatga aaacatttat tagtaaactg atgttagtgt
       61 ccacggttgt actattagct gcttgtcagt ctaatcaggt aaaaggtggt gagagttcta
      121 gtgcttcaag ccaagtttca gatggttcta gtttgcagca agcgtcaaca atagcatcta
      181 gctctgagac gcaagcatcc tctgtgacca ctcctgagct aagtgaagta taccaatcag
      241 ttattgatcg ttatcaagcg aatatggggc agcctgctga ggcaattaat caggatgagg
      301 tcagtagcta tctgagctta ttaactagcc aggggcaaga atacagtgga atattttata
      361 gtttgtatga tgtcaaccat gatggtacag aggagctgct tctagctttg gacaagtcgg
      421 gagaatatgt cttaattgac ctctatactc agcttaccga tgagagtcta cgtttggtgg
      481 ataatttccg caatcttgga tttgaaattg gaccggacgc cctacttcgt cctttacagg
      541 atggaacata cttatttgaa ggagatggta tttttcgcat ttatcaatac aatgcgatga
      601 ttccaggttt aaaacggatt tctgaatcag ataccaatcc tgaaacttct cccttgcttg
      661 agttgaaaag cttgcattgg gttaagctat agattttatt aatgattatt cctaggctgg
      721 atttcccggc cttttgtagt tcctaagaac tttaagtttt cttttggcaa tctttaatct
      781 ttcttttagg aaggaaaggt aaactaggag catatcagga agggatacga cttcctaaag
      841 aaagaaaagg aatctacatt atgaaaacaa atcttaaaaa attactttac tctggtgtta
      901 ctcttatgag ccttggggtc ttagcagcat gttcatctac ttcaagttca acgactactt
      961 caagctcagc agcaactagt cagacaagtg tagcgacaac ttcaaataat agcacttcat
     1021 cagattcaaa ctcgtcaact attgactggt cagcccttcc aacgacagaa gtaacactat
     1081 caaatgatgg tttaaaaatt actgagggtg gaacctatat tttgactggt tcaacaacag
     1141 ctggtgtaac ggttgaaaca gatgccaatg ttcgcatcat tctagcaggt gctgagattt
     1201 caagttcaga tactgcagca atcaatgtta ttaatgctga caatgttgaa ttggaaatca
     1261 aagatggtac gacgaataca gtgaaagata ccagcaatca tacagatacc aatattgaag
     1321 gggctatcca tgttgaagct gatttgacca tcactggtaa tggtagcctg accgttgaag
     1381 gcaacttcca agacggcatc gtatcgacag atgacctagt gatcactgct ggtacaatca
     1441 aggtaactgc agtggatgat ggtatccgtg gtaaggattc attgacaatc aatggtggta
     1501 caatcaatgt cacagcaggt ggtgatggta tcaagtctac aaatgataca gatactacca
     1561 aaggttatac aactatcaca ggtggtgaaa ttactgtaaa agcaggtgat gatggtatta
     1621 aagcggagac ggctttgaca attgacggag gtaccattac agtatcagaa tcagtagaag
     1681 ccttggaagg aactaatatc actatcaacg gtggtacaat tgatgtctat ggttcagatg
     1741 atgctattaa tgcggcaagt acaacgtcat cagaaatctt catcaaggta actggcggtg
     1801 acttgaaagt agctgtaggt agtggagata cggatgcctt tgatgccaac ggtgatatct
     1861 acatttctgg gggtactatt gctgtaacag caccaacatc agcattcgac tttgatggta
     1921 cagcagaatt gacaggaggt actgtgacag ttaacggtga gcagattact caaatcacgg
     1981 cgacaggacc tggcggtcgc ggtggctggt aatcaataat aataatacaa aaaggtctgt
     2041 gttgacgaac tcagaccttt cgtttgcttt ccatgttggg aagattgatt ttgtatttaa
     2101 ttaccaatag tcgaatgatt aaagaaatgg taaaaatagt gatgaaagtt ggaatttgtg
     2161 gtaatttcca atttacaacg caaagatgat agaggactcc tgagaaaaat gcaaggacag
     2221 catagacatc ttctttaaga acaatgggtg tttcattgac gagtaaatca cgggcgattc
     2281 cgcctccgac acctgttaaa gctgccagaa taccactggt tagagcgttt agctggagag
     2341 agatgccagt actggctcca atgagggcga agatggctag accgattgca tcaaagataa
     2401 ggtttgtctg ggaaaggaaa tgaatcatct tcttaccagg tggtttgtcc tgctttagat
     2461 tgataacaat caagtacatg ctaatcgcta ctccgagaga taaatagatg gctgtaggat
     2521 cagtcaaggc ggcaggaatg cgattggcca ttgtatctcg aataattccc ccaccaacgg
     2581 cggtaatgat accgagcaag ctaattccaa aaatatctaa ctttttctta aatcctttta
     2641 cggcccccga aacagcaaat gcaatagtgc ctatgtagtt acaaatcata agaaataaat
     2701 cgaattccat aagaacctcc gtacctatat taacagaaag aaagacggcg tgcaagctta
     2761 tttaaagttt gtgaaaaaag tttcaaacaa gtaaagtgaa tcttttgagg atttgtgaaa
     2821 aaacgcacta aatcaaggtt ttcacgaaaa tttctgtaaa aagaaaacgg ttcaattact
     2881 tgccatttgt gaaatattgg tctatcatag tacagaaaga gaaaaacctt tggaggaaat
     2941 tatggtatct atctcaaaag aacaacattt ggatatgttc ctaaaaatgc aacaaatccg
     3001 tgatgttgat atgaaattaa acaaattagt gcgtcgcggt ttcgtacaag gtatgactca
     3061 cttctcagtc ggtgaagaag ctgcggctgt tggacctatt gctggattga cagatgagga
     3121 catcatcttc tcacaccacc gtggtcacgg tcacgttatt gcaaaaggta ttgatatcaa
     3181 cggtatgatg gctgaacttg ctggtaaggc aactggtaca tcaaaaggcc gtggtggttc
     3241 tatgcacttg gccaacgttg aaaaaggaaa ctttggttca aacggtatcg taggtggtgg
     3301 ttatgccctt gcagtgggtg cggcccttac gcaacaatac ctcggtacag ataacattgt
     3361 tattgccttc tcaggtgatt cggctactaa cgaaggttcc ttccacgaat caatgaactt
     3421 ggcagctgtt tggaatttgc cagttatctt cttcattaca aacaaccgtt acggtatctc
     3481 aactgatatt tcttattcta ctaagattcc tcacctctac caacgtgcag cagcatacgg
     3541 tattccaggt cattatgttg aggatggtaa cgacgttatt gccgtttatg aaaaaatgca
     3601 agaagtcatc gagtacgttc gtgcaggaaa tggtcctgcc atggtcgaag ttgaatcata
     3661 ccgctggttt ggacactcaa ctgccgatgc aggtgtttac cgtactaaag aagaagtcaa
     3721 tgagtggaaa gcaaaagacc cacttaagaa ataccgcaaa tacttgacag agaacaagat
     3781 tgcgacagac gaagaattgg atgctattga agcacaagtg gcagaacaag tagaagcatc
     3841 tgtgaaattc gcacaagaaa gcccagatcc agacatctca gtagcttatg aggatgtgtt
     3901 tgtagactag ggtgtgagga cgttaaagag gcacagaaaa attagggagt cagctagtga
     3961 tgcggacatc actaatggct catctatttt tccaagcctc tagtctgaac ccaactatta
     4021 acgtaagaag tttgactaag ctttaaagaa gcaagtcaaa ctagggtagt tcgagtagct
     4081 atgacgcttg attacaatga agtaattgat tagttttcta tattttactt gttacagtaa
     4141 agataaattg atataaatta ggagtaaaaa atggctgaaa caaaagtaat ggccttgcgt
     4201 gaagcgatta acttggctca aagcgaagaa atgcgtaagg atgaaaaagt attcttgatg
     4261 ggggaagacg tcggtatcta cggcggtgac ttcggtacat ctgttggtat gttggacgaa
     4321 tttggtccaa aacgcgttcg cgacacgcct atctctgagg cagcaatcgc tggttctgcg
     4381 gttggtgcgg ctcaaacagg tcttcgtcca atcgttgact tgaccttcat ggacttcgta
     4441 acaattgccc ttgacgcgat tgttaaccag gctgccaaaa ctaactacat gtttggtggt
     4501 ggtttgaaga cacctgtaac cttccgtgta gcatcaggtt ctggtatcgg ttctgctgcc
     4561 cagcactcac aatctcttga ggcatggttg actcacatcc caggtatcaa ggttgtcgca
     4621 cctggtacag ctaacgatgc aaaaggtctt ttgaaatcat ctatccttga caacaaccca
     4681 gttatcttct tggagccaaa agctctttac ggtaaaaaag aagaagttaa cttggaccca
     4741 gatttctaca ttccacttgg taaaggtgaa atcaaacgtg aaggtactga tgtaaccatt
     4801 atttcatacg gtcgtatgtt ggaacgtgcc ttgaaagctg ctgaagaagt ggctgctgaa
     4861 ggtatcagcg tagaagtggt tgacccacgt acccttatcc cattggataa agaattgatc
     4921 atcgaatctg tgaagaaaac tggtaaggtt atcttggtca acgatgctta caaaacaggt
     4981 ggtttcatcg gtgaaatcgc atcgatcatc acagaaagcg aagcctttga ctacttggat
     5041 gcaccaatca tccgtatcgc ttcagacgat gtaccagttc cttacgcaaa cattcttgaa
     5101 aacgcagtat tgccaaacgt agagaaaatc aaagcggcaa tctacaagca agtaaacaag
     5161 ggttaatctt atcgttatcc gcttatcttt tctggctgtg ttgatttggc ttgcctaacg
     5221 tcagttatgc ctgcaccaaa ttgccttatc agaaaagcaa tcggaaagac gataacccta
     5281 atgggagtg
//
LOCUS       DASFRC010000153         5215 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.153, whole genome shotgun sequence.
ACCESSION   DASFRC010000153 DASFRC010000000
VERSION     DASFRC010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5215)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5215)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5215
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.153"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..1283)
                     /locus_tag="U1087_001862"
     CDS             complement(<1..1283)
                     /locus_tag="U1087_001862"
                     /EC_number="1.1.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA reductase,
                     degradative"
                     /protein_id="HEM4756304.1"
                     /translation="MSTFSGFYKKSRQERIDILRQNHSLSEDSLDVLYKDENLPEAIA
                     GKMAENHLGTFSLPFSVLPELLVDGQTHSVPMVTEEPSVVAAASFGAKIIAKSGGFTT
                     TIHNRIMIGQVALYDISDHSRATQAILDQKESILETANQAHPSIVKRGGGARELTVES
                     KDEFLIVYLQVDVQEAMGANILNNMLEAVKEDLEELSKGQALMGILSNYATESLITAQ
                     CHIAISSLATSSAIAQETAQKIALASKLAQVDPYRAATHNKGIFNGIDAVVIATGNDW
                     RAVEAGAHAYASRDGQYKGLSTWSIDGEHLVGSITLPLPIASVGGSIGLNPKVAVAFD
                     LLQQPKARQLASIIASVGLCQNFAALRALVTSGIQAGHMKLHAKSLALLAGAEEHEVD
                     QLAQLLRKEKHSNLETAQNLLAKMREHWEWERTRP"
     gene            complement(1345..2499)
                     /locus_tag="U1087_001863"
     CDS             complement(1345..2499)
                     /locus_tag="U1087_001863"
                     /EC_number="2.3.3.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA synthase"
                     /protein_id="HEM4756305.1"
                     /translation="MNIGIDKIGFAAPDYVLDLADLAQARNVDPNKFKIGLLQSEMAV
                     APVTQDIISLGAKVAEAILTEEDKQTIDMVIVGTESSVDQSKAAAVTIHGLLGIQPFA
                     RSIEMKEACYGATAGLSLAKSHIAQFPESKVLVIASDIAKYGVASGGEPTQGAGAVAM
                     LVTANPRILVLNNDNVCQTRDIYDFWRPNYDKYPRVDGKFSTEQYTDCLTTTFDYYQQ
                     KTGKTLNDFAAMCLHIPFSKQGLKGLQAIAQEEETLSRLTERFQEAIVYNKVVGNIYT
                     GSIFLSLLSLLENSRALETEDQILFYSYGSGAVCEIFSGQLVEDYRDHLQENRLEQLN
                     QRTKLSVKEYEQVFFEEITLDETGSSLNLPEDQSPFALIKVDNHKRIYRK"
     gene            complement(2528..3712)
                     /locus_tag="U1087_001864"
     CDS             complement(2528..3712)
                     /locus_tag="U1087_001864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HEM4756306.1"
                     /translation="MKKVAIVSAYRSAIGSFGGSLKDIEIADLGAQVLETALANKNIP
                     ADSVDEVIFGNVLSAGQGQNIARQIAIRAGIPQTASAYAVNKVCGSGLKSVLLAAQSI
                     MLGDNDVVVAGGIEIMSQAPYLSKTSRFGSKFGHITLEDSMLTDGLTDAFNDYHMGIT
                     AENVAEHYQVSRAEQDAFTYSSQEKAAKAIAEGRFVDEIVPIRLKNRKGETIFATDEY
                     PRLTPIEKLATLRPSFKKDGTVTAANASGINDGCAVLVLMSDEKASELNIQPLAYIEA
                     YATSGLDPAYMGLGPITASQKALQKLNKTVEDIDLFELNEAFAAQSIPVVKQLGIDPA
                     KVNVNGGAIALGHPIGASGSRILVTLIHELIKQEKELGLCSLCIGGGQGISLIVSNAQ
                     TS"
     gene            3938..4630
                     /locus_tag="U1087_001865"
     CDS             3938..4630
                     /locus_tag="U1087_001865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate mutase"
                     /protein_id="HEM4756307.1"
                     /translation="MVKLVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIK
                     EAGIEFDLAFTSVLKRAIKTTNLALEAADQLWVPVEKSWRLNERHYGGLTGLNKAEAA
                     AEFGDEQVHIWRRSYDTLPPEMAKDHEHSAHTDRRYAHLDDSVIPDAENLKVTLERAL
                     PFWEDKIAPALKDGKNVFVGAHGNSIRALVKHIKQLSDDEIMDVEIPNFPPLVFELDE
                     NLNIVKEYYLEA"
     gene            4736..5119
                     /locus_tag="U1087_001866"
     CDS             4736..5119
                     /locus_tag="U1087_001866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM4756308.1"
                     /translation="MASKKMLHACLRVEDLEASQKFYEEAFGFKETRRKDYPEHKFTL
                     VYLALEEDDFEIELTYNYEHGPYIVGDGFSHLALSSDDLEGDNAKHKELGYPTTDIKG
                     LPGSPGRYYFVTDPDGYRVEVIRAD"
BASE COUNT         1431 a         1064 c         1206 g         1514 t
ORIGIN      
        1 cttggtcgag ttctttccca ctcccaatgt tctctcattt ttgctaataa gttttgagca
       61 gtttctaggt tgctgtgctt ttctttccgc aggagttggg ctagttgatc tacttcatgc
      121 tcctcggcgc cagcaagtag cgctagggat tttgcgtgga gcttcatgtg accagcctga
      181 atccctgaag taacaagagc acgcagggca gcaaagttct gacagagacc gacagaagcg
      241 atgatagaag ctaattggcg tgcctttggt tgttggagaa ggtcaaaagc aactgctacc
      301 tttggattga gcccgataga gccaccgacg gaggcaattg gaagaggtag agtgatggag
      361 ccgaccaagt gctcgccatc aatagaccaa gtagaaagcc ccttgtattg tccatcacgg
      421 ctggcataag catgggcccc ggcttcgact gcccgccagt catttcctgt agcgataacg
      481 acagcatcta taccattaaa aatccctttg ttatgtgtcg cagcacgata agggtccact
      541 tgcgccagtt tgcttgccag ggctattttt tgagcagttt cttgagcaat ggcagagctg
      601 gtagccagac tagagatggc aatatggcat tgggcggtga tcagtgactc cgttgcatag
      661 ttggagagga ttcccatcaa agcctgcccc ttgctgagct cttctaagtc ctccttaaca
      721 gcttctaaca tgttattgag gatattggct cccatggctt cttgtacatc aacctgaaga
      781 tagacaatca aaaactcatc cttactctca acagtcaatt ctcttgcacc gccccctcgt
      841 ttgacaatgg aagggtgcgc ttgattggca gtttctaaaa tactctcctt ctggtcaaga
      901 atcgcctggg tcgctctgct atggtccgaa atatcgtaga gagcaacttg tccaatcatg
      961 atacggttgt gaatagtcgt tgtaaaaccg ccagatttag cgatgatttt ggctccgaaa
     1021 gacgcagctg caaccacaga aggttcttca gtgaccatgg gtacagaatg agtctgtcca
     1081 tccactagaa gttctgggag tacagaaaaa ggtaaggaga atgttcctag atgattttct
     1141 gccatctttc ccgcaattgc ttctggcagg ttctcgtctt tgtatagaac gtctaagcta
     1201 tcttcggata gggaatgatt ctgacggaga atatcaatgc gctcttggcg tgatttttta
     1261 taaaatccgg aaaaagttga cataggttcc tctttctata ggaaagcgcc ccttggtgag
     1321 agccaaaggg cgccgttttg gcttttattt acgatagata cgtttgtgat tgtccacttt
     1381 gataagggca aagggacttt ggtcttctgg taggttaagg gatgaaccgg tttcatcaag
     1441 ggtaatttct tcaaagaaga cttgttcata ttccttaacg ctgagttttg tacgctgatt
     1501 gagttgttct aaacgatttt cttgtaagtg gtcgcgataa tcttcaacga gttgaccgct
     1561 gaaaatttca cagacagcgc cgctaccata gctataaaag aggatttgat cctctgtctc
     1621 taacgctctg ctattttcca aaagggaaag aagagagagg aagatagagc cagtgtagat
     1681 gttgccgacg actttattat agacgatagc ttcctggaaa cgttctgtca agcgactaag
     1741 agtttcttcc tcctgagcaa tagcttgcag tcctttaagg ccttgtttgg agaaagggat
     1801 atgcaagcac atggcagcaa aatcgttgag ggttttgcct gttttttgtt gatagtagtc
     1861 gaaagttgtc gtcaagcaat cggtgtactg ttcagttgaa aatttaccat caacacgtgg
     1921 atatttgtcg tagttgggac gccagaagtc gtagatgtca cgtgtctggc agacattatc
     1981 attattgagg accaaaattc gtgggtttgc ggttaccaac atggcaactg ccccagcacc
     2041 ttgggtaggt tcaccgccag aagcgactcc atattttgca atatcactag caatgactag
     2101 gacttttgat tctgggaatt gagcgatatg gcttttggca agacttagtc cagccgttgc
     2161 accgtaacaa gcctccttca tctcgatgga gcgagcgaag ggctgaatac cgagtaatcc
     2221 atgaatagta acggcggcag ccttactttg atctacgcta gattctgtac cgacaataac
     2281 catgtcaatg gtttgtttat cttcttctgt cagaatggct tcggcaacct ttgccccaag
     2341 actgataata tcttgagtga caggagctac agccatttca gactgaagaa gaccaatctt
     2401 aaatttattt gggtccacat tgcgggcttg ggctaaatca gccaaatcta aaacataatc
     2461 gggtgccgca aatccgattt tatcaatacc gatgttcata atatatcctt tgtgtacaaa
     2521 tgataggtta acttgtttgc gcattggaaa cgattaggga gatgccttga ccgcctccga
     2581 tacaaagtga gcaaagacca agctcttttt cttgcttgat taattcgtga atcagagtga
     2641 ctaggattcg actaccacta gctccgattg gatgtccaag ggctatagca ccaccattga
     2701 cattgacttt tgcaggatca atgccgagtt gtttgacaac tggaattgat tgggctgcga
     2761 atgcctcgtt gagttcgaat agatcgatat cctcgactgt tttattcagt ttttgtagcg
     2821 ctttttggct agcagtaata ggacctaacc ccatataggc aggatctaaa ccgcttgttg
     2881 cataggcctc aatataggcg agtggctgga tatttagctc actggctttt tcatcagaca
     2941 tgagtaccaa gacagcacag ccgtcgttga tgccagaagc attggctgcg gtgacggttc
     3001 catccttttt aaaagatggc cgaagtgttg ccaatttttc aattggcgtc agacgagggt
     3061 actcatctgt ggcaaaaata gtttcgcctt tccgattttt taatctaata ggaacaattt
     3121 cgtcaacaaa tcttccctca gcaatagctt tcgcagcctt ctcttggcta ctgtatgtaa
     3181 aagcatcttg ttctgcgcga ctgacttgat agtgttcagc aacattttct gcagtaatac
     3241 ccatgtgata gtcgttgaag gcatctgtta gaccgtctgt cagcatagaa tcttctagag
     3301 taatatgacc aaatttacta ccaaaccggc tagttttgga tagataaggt gcctggctca
     3361 tgatttcaat gcccccagcc acaactacat cattgtcacc tagcatgatt gactgggcag
     3421 ccaggaggac tgatttgaga ccggaaccac agactttatt gactgcatag gcagaggctg
     3481 tctgaggaat gcctgcacga atagcaattt gacgtgcaat attttgtcct tgtcctgctg
     3541 aaagaacatt tccgaagata acttcatcaa cgctgtctgc agggatgttt ttattagcta
     3601 aggctgtttc gaggacttgc gcccctaaat cagcgatttc aatatctttc agactacctc
     3661 cgaaactgcc gatggcagaa cgataggcag acacgatagc tacttttttc atgataactc
     3721 ctatagtggt atcgttttga actgtcgtgt tcagccttac tattatacca ttattttgta
     3781 ttttttctaa gaagaaagat aggtctagag actgaattta catgaaagag taatgaaagc
     3841 gtacacagat tgtggaaagg ctggcatttt tttacctttt cgtgtaaaat agagaagtat
     3901 aagaggggaa cctcaaaatt taaaggagaa tccataaatg gtaaaattgg tttttgctcg
     3961 ccatggtgag tctgaatgga acaaagctaa ccttttcact ggttgggctg atgttgattt
     4021 gtctgaaaaa ggtacacaac aagcaatcga tgcaggtaaa ttgatcaaag aagcaggtat
     4081 cgaatttgat cttgctttca catctgtatt gaaacgtgct atcaagacta caaacttggc
     4141 tcttgaagct gcagatcaat tgtgggtacc agttgaaaaa tcatggcgtt tgaacgaacg
     4201 tcactacggt ggtttgactg gcttgaacaa agctgaagca gctgctgaat ttggtgatga
     4261 gcaagttcac atctggcgtc gttcttatga tactttgcca ccagaaatgg ctaaagatca
     4321 tgagcattca gcacacactg accgtcgcta tgcacacctt gatgattccg ttattccaga
     4381 tgcagaaaac ttgaaagtaa cgcttgagcg tgcccttcca ttctgggaag ataaaattgc
     4441 tccagcattg aaagacggta aaaacgtatt cgtaggtgca cacggtaact caatccgtgc
     4501 ccttgtaaaa cacatcaaac aattgtctga tgatgaaatc atggatgtgg aaattccaaa
     4561 cttcccacca cttgtattcg aattggatga aaacttgaac attgtgaaag agtactactt
     4621 ggaagcataa ttcatttaag gcctgagttc gctcaggctt ttttagtttt gaatatcgga
     4681 tttttcatag agagtatggt atactggtgg tattaaatgg taggaggaat ttattatggc
     4741 aagtaaaaaa atgctacatg catgtttgcg tgttgaggac ttagaagcat ctcaaaaatt
     4801 ttatgaagaa gcatttggat ttaaggaaac ccgtcgcaag gactatccag agcacaagtt
     4861 taccttggtt tacttagcac ttgaagagga tgactttgag attgaattga cctacaatta
     4921 tgagcatggt ccctatatcg taggcgacgg cttctcgcat ctagctcttt cttcagatga
     4981 tttagaaggg gataatgcga aacataagga gctgggctat ccaacgacag acatcaaggg
     5041 cttgccagga agtccaggtc gttattattt tgtgacagat ccagatggct accgtgtgga
     5101 agtcattcgt gcagattaat ttagaaaaga ttgcctaggc agtctttttc ttttcaaaaa
     5161 aaaatcagaa aatggcagaa gggagggatt aggaagcaaa tcaattattt atact
//
LOCUS       DASFRC010000154         5160 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.154, whole genome shotgun sequence.
ACCESSION   DASFRC010000154 DASFRC010000000
VERSION     DASFRC010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5160)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5160)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5160
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.154"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(134..1237)
                     /locus_tag="U1087_001867"
     CDS             complement(134..1237)
                     /locus_tag="U1087_001867"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011226530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HEM4756309.1"
                     /translation="MIESEHRPTQIRVNLDAIAENFEQVMTNLPPKTEAFAVVKANAY
                     GHGAVAVAKKLSSQAAGFCVSNLDEALELRKVGIEHPILILGVVPVRFLPVAHQLNIS
                     VTVASLDWLQDAKDLEADLSGLTVHLKLDTGMGRIGFRKIADLLQAIAILEELEYDIE
                     GVYTHFATADEVDQAHFESQLSVFKEFLDVLPITPRWIHASNSATSIWHADTVFNLVR
                     LGNILYGLNPSGRVLELPFDVQPALSLVSEIVHVKQVEAGTTIGYGATYHSTDSEWIA
                     TVPIGYADGLVRSLQGLSVLVDGQACEIVGRISMDQITIRLPHAYPLGQKVTLIGQDG
                     DKTISVQEWADRIGTINYEVVCLLTDRLPRIFE"
     gene            complement(1230..1589)
                     /locus_tag="U1087_001868"
     CDS             complement(1230..1589)
                     /locus_tag="U1087_001868"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HEM4756310.1"
                     /translation="MIVGHGIDLQEMEAIESARIKHQGFPKKILTEKEFERYQSLSGR
                     RQLEYLAGRWSAKEALTKALGRGIGKIGFHDIEILNTSKGVPYVTKSPFDGNIWLSIS
                     HSGNFVQASVILEEKDD"
     gene            complement(1704..4229)
                     /gene="secA"
                     /locus_tag="U1087_001869"
     CDS             complement(1704..4229)
                     /gene="secA"
                     /locus_tag="U1087_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HEM4756311.1"
                     /translation="MVTNVLRSLIENDKGELRKLEKMADKVFSYADEMEALTDEQLQA
                     KTAEFKERYNNGESLDDLLYEAYAVVREGARRVLGLYPYKVQVMGGIVLHNGDVPEMR
                     TGEGKTLTATMPVYLNALSGQGVHVVTVNEYLSTRDATEMGELYSWLGLSVGINLAAK
                     SPLEKREAYNCDITYSTNSEIGFDYLRDNMVVRAEDMVQRPLNYALVDEVDSILIDEA
                     RTPLIVSGAQGSETNQLYFLADNLVKSLTTEDYIIDIPSKTIGLSDSGIDKAEKFFKL
                     DNLYDIENVAITHFLDNALRANYIMTYDIDYLVNEDQEVMIIDPFTGRTMEGRRYSDG
                     LHQAIEAKEGVPVQNESKTSASITYQNLFRMYKKLSGMTGTGKTEEEEFREIYNIRVV
                     PIPTNRPIARVDHEDLLYPSLEYKFNAVIADVKRRYEKGQPVLVGTVAVETSDLISQK
                     LVAAGVPHEVLNAKNHYREAQIIMNAGQRGAVTIATNMAGRGTDIKLGPGVRELGGLC
                     VIGTERHESRRIDNQLRGRSGRQGDPGESQFYLSLEDDLMKRFGSERIKVFMERMNLT
                     EEESVIKSKMLTRQVESAQKRVEGNNYDSRKQVLQYDDVMREQREIIYRQRHDVITAD
                     RDLAPEIKAMMKRTIERQVAGHFLGSKDEAIDGIIKFAHANLVDDDTLSKATFEAMNQ
                     KEIVEELYERALRVYDSQVKKLRDEERVREFQKVLILRVVDNKWTDHIDALDQLRNAV
                     SLRGYAQNNPIVEYQSEAFTMFNDMIGAIEFEVTRLMMKAQIHDNIERERTSQEAHTT
                     AVKNIMPNQSHAMQENVSFEGVDRNDPCPCQSGKKFKNCHGRK"
     gene            complement(4549..>5160)
                     /locus_tag="U1087_001870"
     CDS             complement(4549..>5160)
                     /locus_tag="U1087_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase"
                     /protein_id="HEM4756312.1"
                     /translation="TPTEEVTEAPEASVVESNSASPTSAETNSTEVVVAKQEVADSLV
                     SAPQTSSASLTLEVPKNEYLDEKADATMPNGVEANTHEAVSVPTSDIRVQNVGSAAVP
                     QPQSLSATVLREAISTVEPVSVATSSQERSAVVGEVKVPASLERSNNSVKEEKVVDSN
                     TTIENQETEKKEVLTSENVLNSLVTIWVALSTSFFMRYFSRGK"
BASE COUNT         1480 a         1177 c          953 g         1550 t
ORIGIN      
        1 gtacgtcgca gtaataaaag tcaactaaat gacgatattt gtattataga caatctctag
       61 gtaatacctc tctaatattt tagctttcta ttctagtgaa aaaggcggat tatcgtcact
      121 tttaccatcg ctgttattca aaaattcgag gtaggcgatc tgtcaaaaga caaaccacct
      181 cgtaatttat ggttccgatg cgatcagccc actcctgaac agagatcgtt ttatctccat
      241 cttgaccgat tagggtgact ttttgaccaa gtggataagc atgcggtaag cgaatggtga
      301 tctggtccat cgaaatacgc cctacaattt cacaggcctg cccatcgact aagactgata
      361 aaccttgtaa gcttcgtacg agaccatctg catatcctat cggaacggtc gcaatccatt
      421 ctgaatcggt gctgtgataa gtagctccgt agccaattgt tgtgccagct tcaacctgtt
      481 ttacatgaac aatttcagat acgagagata aagctggttg aacatcaaac gggagttcta
      541 gtactcgtcc acttggatta agtccataaa gaatgtttcc caaacgaacc aggttaaata
      601 ctgtatcagc atgccaaatg cttgttgctg aattgctggc atgaatccag cgcggagtaa
      661 ttggtagaac atccaaaaat tctttaaaaa cagacagttg actctcgaag tgcgcctgat
      721 caacctcatc cgcagtagca aaatgagtat agactccttc aatgtcatac tctaattctt
      781 caaggatagc aatcgcttgt agcaaatcag ctatttttct aaaaccaatc cgccccatgc
      841 cagtatctag cttaagatgg acagttagac cagataaatc agcctctaag tcttttgcat
      901 cttgcaacca gtccagactg gcaactgtca cactgatatt gagttgatga gctactggta
      961 aaaaacgtac aggaaccact cctaaaatca agataggatg ctcgatacct actttacgta
     1021 actctaatgc ttcatccaaa ttcgaaacac aaaaaccagc tgcttgacta gataactttt
     1081 tcgctaccgc aacagctcca tgaccataag cattcgcctt aacaacagca aatgcttcag
     1141 tcttaggggg taagttggtc attacttgct cgaaattttc cgcaatcgca tctaagttaa
     1201 cccgaatttg cgtgggtcga tgttcacttt caatcatctt tctcctccaa aatcacacta
     1261 gcttgtacaa aatttcctga atggctaatg ctgagccaaa tattcccatc aaagggactc
     1321 ttcgtcacat agggaactcc tttgctggta ttcagaattt caatatcatg aaatcctatc
     1381 ttaccaatac ctctccccaa ggccttggtc agcgcttctt tggctgacca acgtccagct
     1441 aaatattcta actgacggcg accggacaga ctttgatacc gttcaaattc tttctctgtg
     1501 agaatctttt tgggaaaccc ttggtgtttg attctggcac tttcaatcgc ctccatctcc
     1561 tgaaggtcaa tgccatgtcc tactatcatt aatcggtctc cttttgcata gccatttcat
     1621 ttattaacat aaacgaactg actctagtga cttgtctaaa aattgcaaaa ggactggaca
     1681 gccgtccagt ccacgcgtca ttcctattta cggccgtgac aatttttaaa tttcttacca
     1741 gactggcatg ggcatggatc attacgatca acaccttcaa aagatacatt ctcctgcatt
     1801 gcatgcgatt ggttcggcat aatattctta acagctgtcg tatgtgcttc ttgacttgtg
     1861 cgctcacgct caatattgtc atgaatttgc gccttcatca tcaagcgggt tacttcaaac
     1921 tcgatagccc caatcatatc gttgaacata gtaaatgctt ctgattgata ttcaacgatt
     1981 ggattgtttt gagcgtatcc acgaagactg actgcattgc gcaattgatc caaggcatca
     2041 atatggtctg tccatttgtt atccacaaca cgaaggataa gaactttctg gaattcgcgt
     2101 acacgttctt catcgcgtaa ttttttcact tgcgaatcat agactctcaa agcacgttca
     2161 tagagctctt cgacaatctc tttctgattc attgcttcaa aagtagcttt actcaaggta
     2221 tcatcgtcaa cgagatttgc atgcgcaaat ttgataattc catcaatagc ttcatctttc
     2281 gaaccaagga agtgaccagc aacttggcgt tcaatcgtcc gtttcatcat tgctttgatt
     2341 tcaggagcca aatcacggtc agcagtaata acatcatggc gttggcgata gatgatttca
     2401 cgttgctcac gcatcacatc gtcatattga aggacttgtt tacgtgaatc gtagttgttc
     2461 ccttccacac gcttctgagc agattcaact tgacgtgtca acattttaga cttgataacg
     2521 gactcttctt ctgttagatt catacgctcc ataaatactt tgatgcgttc tgaaccaaag
     2581 cgtttcatca agtcatcttc gagagataga tagaattgtg attcacctgg gtcaccttga
     2641 cgacctgaac gtccacgaag ctggttatca atacgacgac tttcatggcg ctcagtacca
     2701 ataacacata gcccaccaag ttcacgtaca cctggaccta acttaatatc ggtaccgcgt
     2761 cccgccatgt tggtcgcaat agtgaccgca ccacgctgac cagcattcat aataatctgc
     2821 gcttcacgat agtggttttt agcattcaat acttcgtgag ggacacctgc agctaccaat
     2881 ttttgagaaa tcaaatcaga agtttcaacc gcaactgtac cgaccaagac aggttgccct
     2941 ttctcatagc gtctcttcac atcagcaata acggcattga atttgtattc tagacttggg
     3001 tagagtaaat cttcgtggtc aacacgcgcg attgggcggt tggttgggat tggtacgaca
     3061 cggatgttgt agatttcacg gaattcttcc tcttctgttt taccagtacc cgtcatccct
     3121 gataattttt tatacatacg gaaaaggttt tggtaggtaa tagaggcact tgtcttagac
     3181 tcgttttgaa ccggtacacc ttccttagct tcgatggctt ggtgaagtcc atcagaataa
     3241 cgacgacctt ccatcgtacg acctgtaaat ggatcaataa tcatgacctc ttggtcttca
     3301 ttgaccagat agtcaatatc ataggtcata atgtagttgg cacgaagtgc attatccaag
     3361 aaatgggtaa tggctacatt ttcaatatcg tagaggttat ctaacttgaa gaatttctct
     3421 gctttgtcaa tacctgaatc agacagacca atcgtcttag atggaatgtc aatgatgtaa
     3481 tcttctgttg tcaaagattt aacaagattg tctgccaaga aatacaactg gtttgtttca
     3541 gaaccttgtg caccagatac aatcaacggc gtacgagctt cgtcaatcaa gattgagtca
     3601 acttcatcga ccaaggcata attgagagga cgttgaacca tgtcttctgc gcgaacaacc
     3661 atattgtctc ggaggtagtc aaaaccaatc tctgagttgg tcgaataagt aatatcgcag
     3721 ttataggcct cacgtttttc caagggtgat ttagcagcta agttgatacc aactgataga
     3781 ccaagccatg aatacaattc acccatttca gtcgcatcac gagtagaaag atactcgtta
     3841 accgtcacta cgtgaacacc ttgaccagac aaggcattca aataaacagg catcgttgca
     3901 gtcagagttt taccttcacc tgtacgcatt tctggaacgt caccgttgtg aagaacgatt
     3961 cctcccataa cctgaacctt gtagggatag aggcccaata cgcgacgagc tccttcacgg
     4021 actaccgcat aagcttcgta caaaagatcg tcgagggatt caccgttatt gtatcgctcc
     4081 ttaaattctg ctgtcttagc ttgcaactgt tcatcagtca gcgcttccat ttcatcggca
     4141 tacgagaaga ccttgtctgc cattttctca agttttctta gctctccctt atcattttca
     4201 atgagagaac gaagtacatt tgttaccata tcattcatcc tatttcagtt ttagtcaata
     4261 acatattgta gcagaaaatt aggcaatttt caaggtttgg cactaggata cagcctaaat
     4321 aagtgaaaat gctagcttaa tattactatt tttaccacaa aacacctcct agtcacaata
     4381 actcctagga ggtgaaaaat ttataaaatt ttaaatgagg aatctgcgat atatcggaga
     4441 tttagaaatt cattaaaagc tcagttatca tattattcaa ttaataaaag ctcacatgaa
     4501 taattttcta cacaaagata aacgtcatct ttaacctgtg ttaatatatt attttcctcg
     4561 agaaaaatat ctcatgaaga aactagtaga taaagctacc caaattgtta ctaagctatt
     4621 aagtacattt tccgaagtaa ggacctcttt tttctctgtc tcttgattct caattgttgt
     4681 atttgaatct accacttttt cttccttaac agaattgtta ctacgttcaa gagaggcagg
     4741 cactttcacc tcaccaacta ctgcacttct ctcttgagaa gaagttgcaa cgcttacagg
     4801 ctcaactgtt gaaattgctt ctctaagtac tgtagcagat aaagactgag gttgaggcac
     4861 cgcggctgaa ccaacatttt gaacacgaat atctgatgtc ggaacagaaa ctgcctcatg
     4921 agtatttgct tcaactccat ttggcatagt tgcatctgct ttctcgtcta aatattcatt
     4981 tttaggaacc tctaaagtaa gtgaagcaga acttgtttgt ggagcagaaa ccagtgagtc
     5041 agctacttct tgtttagcta ccaccacctc tgtagaatta gtttccgccg aagttgggga
     5101 tgctgaatta ctctcaacta cacttgcttc cggtgcttct gttacctcct ctgtaggagt
//
LOCUS       DASFRC010000155         5092 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.155, whole genome shotgun sequence.
ACCESSION   DASFRC010000155 DASFRC010000000
VERSION     DASFRC010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5092)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5092)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5092
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.155"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(177..758)
                     /locus_tag="U1087_001871"
     CDS             complement(177..758)
                     /locus_tag="U1087_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit delta"
                     /protein_id="HEM4756313.1"
                     /translation="MELNIFAGQEKSELSMIEVARAILEERGRDNEMYFNDLVNEIQN
                     YLEKSNSEIRAALPTFYSDLNVDGSFIPLGENKWGLRSWYAIDEIDEEVITLEEDDED
                     APKRKKKRVNAFMDGDDDAIDYGHDDPEDEDNYPGSASSEYDDENPDDEKDEVESYDS
                     EINEIIPDDELDEEDVDLGEDDDEYSDEEVVDE"
     gene            complement(885..4040)
                     /locus_tag="U1087_001872"
     CDS             complement(885..4040)
                     /locus_tag="U1087_001872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pneumococcal-type histidine triad protein"
                     /protein_id="HEM4756314.1"
                     /translation="MKKKAVVGSVAALVLGMSLCSYQLGRFQAMEEQKNRVSYIEDSQ
                     SVQTTVAEQLTPDQVSAKENIDAEQIVVKITDQGYVTSHGDHFHYYNGKVPFDAIFSE
                     ELVMKDPNYVLQDSHIINEVQDGYVIKVDGKYYLYLKDSSKHKNVRSKEEVERQKGIS
                     SADSKNQVAGNSKDGRYRTDDGYVFNPTDVIEDTGDGFIVPHGDHFHFIPKKDLSAAE
                     LKAAQDYWNQKGSVSSASGSQYGDRNNRAQQTTISAGQGQDLASLLAQLDATPLSQRH
                     VEADGLVFDPRTITKKTAAGVIVPHGDHYHFIPYSQMSPLEEKISRMIGVNGAGVSSG
                     AQASHSQHTPTQLNRPVTPIGTVTTQPVSPTQPVLPTQPKQSTGKVVSYMGRQIPAYG
                     KGLDGRAYFTSDGYIFSKSSITSVDDQGLIASHGDHFHYVGFGELEDFEIKQVEEWVN
                     EKAGKQVPPKTSEQVGNDAKPITPSQGNDSRPVKPIQEENRPAFEYKQVTAKRKLAGK
                     VVYEMEVGGKTYTYGRDELDLMKISFAELTLAEKDKQYIFDIAPLAEGDLTPAMLVGM
                     DQIPMKGANATYDTGQSFIIPHIDHIHVLPYTWLSKEQIATIRYIMQHPEIRPSAWTT
                     SGHGDGEATDLVPPILNATPKANRLGLKNWQIIHTAEEVMDARAKGKFATNDGYIFSA
                     EDVLDPASFVFSQAFSLPRATGGSLRSISKKDLSKEELEAVQTLLDKRDAEELAKNVT
                     PIEKRAGLKNWQIVHSAEELAEAKAAGKYTTKDGYIFDPADLLDPKVKIGTDNYRIPR
                     VITDGYRRINKSDLNYLSELIPAEAMVAQREKSNSSSPSTPALTETGASAGETTTPEQ
                     PQVPKETAEEIYNRVEAKKVVPFEALTYNAGYATEVRNGTLVIPHQDHYHYVSFKWFD
                     QGSARSPEGYSLEDFLATVKYYMTNPQERPVSDDGWGVFTPNTPSESTEETETEESDE
                     EIISEETEEIDEFTEELKRRAEEFGMDFKTFEQSLVTLSDRYKVSFEAFEYDATSKVV
                     RLVDKDGVKRIISLPSLEEQV"
     gene            complement(4074..4994)
                     /locus_tag="U1087_001873"
     CDS             complement(4074..4994)
                     /locus_tag="U1087_001873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000744528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEM4756315.1"
                     /translation="MFKKIVGTCLLAVFGFVLAACSAQKEASQVQPGMKIVTSFYPIY
                     SLVKEVSGNKNDVRMIGSRQGIHSYEPSAADIKAIYDADVFIYHSRILESWAGRLEPN
                     LQGSSVKVLEASTNLPLTKVPGLEDMEAGQGIDEASLYDPHTWLDPVLVGQEAVAIGE
                     LLAESDPKNADYYRQNAATLEEKAQKLADKYSPIFLKATSKTFVTQHTAFSYTAQRFG
                     LKQLGIAGVSEEEPSPRQLAEIKEFVDTYNVQTIFTEKGASDKLAKALASSTGVDLKV
                     LDPLEADPENNLTYLENLEQVLETLAQELK"
BASE COUNT         1294 a         1140 c          954 g         1704 t
ORIGIN      
        1 gattcaggct aataggaagc aatttgtggg ggatactccc tgttaacttg aagaaaaaac
       61 aaaaatagct ccctatcgct agggagctcc gacctcaaaa gaggtgccca ataatatctt
      121 atcgtaattc agtagtcttg tcaaattatt tttaagaatc tagggggata taattcttat
      181 tcatcgacga cctcttcatc tgaatactcg tcatcatctt cacctaaatc aacatcctct
      241 tcgtccaatt cgtcatctgg aataatttcg ttgatttctg aatcatagga ctcaacttca
      301 tctttttcgt catctggatt ttcatcatcg tattctgatg atgcactacc cggatagttg
      361 tcctcatctt ctggatcgtc atgtccatag tcaatcgcat catcatcacc gtccatgaag
      421 gcattgacac gtttcttctt gcgttttggt gcgtcttcat catcttcttc aagagtgatt
      481 acttcttcat cgatctcatc gattgcgtac caagaacgta atccccattt gttttcgcca
      541 agtggaatga agcttccatc cacattcaaa tcagaataga aggttgggag ggctgcgcga
      601 atctcgctgt ttgatttttc aaggtagttt tgaatttcat tgaccaagtc attgaaatac
      661 atttcgttgt cacgtccacg ttcttccaaa atagcacggg ctacttcaat catggaaagt
      721 tcgctttttt cttgtcctgc aaatatgtta agttccaagg ctgttctcct tttttgtctt
      781 tcctttctat tttacgctaa aaaaggcaaa tagtcaaaga taatctttat cgtttttctg
      841 taaaaaaata cctgcagagc tcagcgctac aggtattttg tttactatac ttgttcttct
      901 aaacttggaa gggaaatgat ccgtttgacc ccatccttat ctacaagtcg aacaactttg
      961 cttgttgcat catattcgaa agcttcaaaa gaaactttgt aacggtctga gagtgtgacc
     1021 agactttgtt caaaggtttt gaagtccatg ccaaactctt ctgctcttcg ttttaattct
     1081 tctgtaaact cgtcaatttc ctcggtttct tcagaaataa tttcttcatc actttcttcc
     1141 gtctctgttt cttctgttga ttcagatggt gtatttggtg taaatactcc ccagccatcg
     1201 tctgaaactg ggcgttcttg tggattagtc atgtagtatt taaccgttgc taggaaatct
     1261 tctaaactgt acccttcagg acttcttgca ctaccttggt caaaccattt aaaggataca
     1321 tagtgatagt gatcttgatg cggaattacc agagtcccgt tgcgtacttc ggtcgcatag
     1381 ccagcattat aggtcagtgc ttcgaaagga acgactttct tcgcttccac tcggttataa
     1441 atttcctctg ctgtttcttt gggaacttgt ggctgttctg gcgttgttgt ctcgcctgca
     1501 cttgctcctg tttcagttag tgcaggtgtt gacggtgaac tagaattaga tttctcacgt
     1561 tgagccacca tagcctcagc tgggatcagc tcgcttaagt aattcaaatc actcttgtta
     1621 atccgacggt aaccatctgt aatcacacgt gggatgcgat agttatccgt tcctattttc
     1681 actttgggat ctaataggtc tgctgggtca aaaatatagc catcttttgt tgtatatttt
     1741 cctgctgcct tagcttctgc caattcttct gctgagtgaa caatttgcca atttttcaaa
     1801 cctgcacgtt tctcaattgg tgtgacattt ttcgccaatt cttcagcatc tcgtttatca
     1861 agaagagttt gtacagcttc caattcttct ttagataaat ctttcttgga aattgaacgc
     1921 agagaaccac ctgtcgctct tggtagactg aacgcttgac taaagacaaa acttgctgga
     1981 tctagtacat cttctgcaga gaagatatag ccatcatttg tcgcaaattt cccttttgca
     2041 cgtgcatcca tgacttcttc tgctgtgtga atgatttgcc aatttttcaa gcctaagcgg
     2101 tttgctttag gtgttgcatt tagaattgga ggaacaagat ccgttgcttc tccatcacca
     2161 tgtccacttg tagtccaagc agatggacga atttcaggat gttgcatgat atagcggatc
     2221 gttgcaattt gttccttact caaccatgtg taaggtagga cgtggatgtg atcaatgtgt
     2281 ggaataataa aggattgtcc agtatcatag gttgcattcg ctcccttcat cggaatttga
     2341 tccataccga ccaacatggc tggcgtaaga tctccttctg caagcggtgc aatatcaaag
     2401 atatactgct tatctttttc tgccaaggtc aactcagcaa aagagatctt catcaaatct
     2461 agttcgtcac gaccatatgt ataagttttt ccacctactt ccatttcata aacaactttt
     2521 ccagccaatt tacgtttagc cgttacttgt ttgtattcaa atgcagggcg attttcttct
     2581 tgaattggtt ttacaggtct tgaatcattc ccttgacttg gtgttatggg tttagcatcg
     2641 tttcctactt gttcagatgt tttcggtggc acttgtttgc ccgccttctc attaacccat
     2701 tcctctactt gcttgatttc aaaatcttcg agttcgccaa aaccaacata atggaaatga
     2761 tctccatgac tagctatcag cccttgatca tcaactgagg taatagagga tttgctaaag
     2821 atgtatccat cacttgtaaa atatgcccta ccatctaaac cttttccgta agcaggaatt
     2881 tgacgtccca tataggaaac cactttccct gttgactgct tcggttgtgt tggtaatact
     2941 ggttgtgtag gcgataccgg ttgtgttgta accgtgccga ttggtgttac tggacgattt
     3001 agttgtgttg gtgtatgttg ggagtgactt gcttgtgcgc cagaagaaac acctgctcca
     3061 tttacaccaa tcattcgaga aatcttctct tctagaggag acatctggct gtatggaata
     3121 aagtggtaat gatcgccgtg tggaacgatg acacctgctg cggttttctt cgtaatcgtt
     3181 cttgggtcaa ataccaatcc atccgcttct acatggcgtt gagatagggg tgttgcatcc
     3241 aattgagcca ataaactagc caaatcctga ccttgccccg cactaattgt tgtctgttga
     3301 gctctattat ttctatcgcc atattgacta ccactagccg agctcacact tcctttttga
     3361 ttccagtaat cttgagcagc cttcaattcg gcagctgata aatctttttt aggaataaag
     3421 tggaaatggt cgccgtgtgg aacgataaaa ccatctcccg tgtcttcaat aacatctgtc
     3481 ggattaaaga catagccatc gtctgttctg tagcggccat ctttactatt tcctgccacc
     3541 tgattcttac tgtcagcaga agagattcct ttttgccgct ccacttcttc tttgctacga
     3601 acatttttat gtttgctaga gtcttttaga tagagatagt atttcccatc aacttttatg
     3661 acgtagccat cctggacttc attgatgatg tgactgtctt gtaagacata gtttgggtcc
     3721 ttcatgacca actcttcact aaaaatcgca tcaaagggga ctttaccatt atagtagtgg
     3781 aaatggtcac catgtgatgt cacatagcct tgatcagtaa ttttaacgac tatctgctca
     3841 gcgtcaatat tttccttggc agaaacttga tcaggtgtta attgttcagc aacggtagtt
     3901 tgtacacttt gactatcttc aatataggac acacgatttt tttgctcttc catcgcttgg
     3961 aaacgtccaa gctgatagct acagagactc atccctaaaa caagggcggc tacggagcca
     4021 acaactgctt ttttcttcat tttttctcct ttcggtcgat agaattcggc cttttacttt
     4081 aactcttgag ctaatgtttc taagacttgc tctagatttt ctagataggt taaattattt
     4141 tctggatctg cttcaagagg atccaacact tttaaatcta cacctgtcga actcgccaat
     4201 gccttggcaa gcttatccga ggcacctttt tctgtaaaaa ttgtttgcac attgtaggtg
     4261 tcaacaaatt ctttaatttc cgccaactgt ctagggcttg gctcttcctc tgaaactcct
     4321 gcgatcccta actgcttcaa cccgaagcgt tgtgcagtgt aagagaaggc tgtgtgttga
     4381 gtgacaaatg tttttgatgt ggcttttaaa aagattgggc tatacttatc tgccaacttt
     4441 tgcgcctttt cctctaatgt tgcggcattt tgacgataat aatccgcatt cttaggatca
     4501 ctttctgcta aaagttcacc aatcgcaaca gcttcctgac caaccaaaac aggatccagc
     4561 catgtgtgag ggtcatataa actagcttca tcaatccctt gaccagcttc catgtcttct
     4621 aaccctggaa cctttgtcag cggtaaattt gtcgaagcct ccaaaacctt gacagatgaa
     4681 ccttgcaaat taggttccaa acgtcctgcc caggattcca aaattcgcga atgatagata
     4741 aaaacatctg catcatatat agcctttatg tccgcagccg atggttcata agagtgtatg
     4801 ccctgtcttg agccaatcat tcgaacatca tttttatttc ctgacacttc cttaaccagt
     4861 gaataaatcg ggtaaaatga ggtgactatt ttcattcctg gctgcacttg actcgcttcc
     4921 ttctgagccg agcaagccgc taaaacaaaa ccgaatacgg ccaaaagaca ggtccctact
     4981 attttcttaa acataattac ctccttcttt aaccagttaa ttatataaca aaaacattaa
     5041 ctggtcaagc atttttttga gaaagtcata gctatccgcg aaagctaaat tc
//
LOCUS       DASFRC010000156         5081 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.156, whole genome shotgun sequence.
ACCESSION   DASFRC010000156 DASFRC010000000
VERSION     DASFRC010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5081)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5081)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5081
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.156"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..159)
                     /locus_tag="U1087_001874"
     CDS             complement(<1..159)
                     /locus_tag="U1087_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009660260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone acetyltransferase"
                     /protein_id="HEM4756316.1"
                     /translation="MIVLKPVDESSYQAVLDLTVAEEDKGLVAPNVRSLADAWLYREN
                     GSGKELDGF"
     gene            complement(162..749)
                     /gene="yqeK"
                     /locus_tag="U1087_001875"
     CDS             complement(162..749)
                     /gene="yqeK"
                     /locus_tag="U1087_001875"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
                     YqeK"
                     /protein_id="HEM4756317.1"
                     /translation="MIAADLTFDRQALLEKIRVAMKPARFQHVLGVEEAALALADRYG
                     CDPKKASLAALLHDYAKEVEDQVFLDLIAKYDLDKALLNWDNNIWHGVVGAYKIAEDF
                     GLKDEEIFQAIQRHTIGAGQMTLLDKVLYVADYIEPNRDFPGVDEARRIAKESLDKAV
                     AYETAQTISYLAKKGIPIYPQTLETYNGYVAWLKE"
     gene            complement(746..1378)
                     /locus_tag="U1087_001876"
     CDS             complement(746..1378)
                     /locus_tag="U1087_001876"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HEM4756318.1"
                     /translation="MAIELLTPFTKVELEVEKKETNRKQVGILGGNFNPVHNAHLIVA
                     DQVRQQLKLDEVLLMPEFIPPHVDKKETIDEYHRYSMLKMAIAGIEGLGIETIELERR
                     GVSYTYDTMKLLKEKNPNTDYYFIIGADMVDYLPKWHRIDELVQLVQFVGVQRPRYKA
                     GTSYPVIWVDVPLMDISSSMVRSFIKQGRVPNFMVPHEVLDYIEEKGLYQ"
     gene            complement(1391..1702)
                     /gene="yhbY"
                     /locus_tag="U1087_001877"
     CDS             complement(1391..1702)
                     /gene="yhbY"
                     /locus_tag="U1087_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000060164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HEM4756319.1"
                     /translation="MMLTSKQRAFLNSQAHSLKPIIQIGKNGLNDQIKTSVRQALDAR
                     ELIKVTLLQNTDENIHEVAEILEEEIGVDTVQKIGRILILFKQSSKKENRKISKQVKE
                     I"
     gene            complement(2021..3127)
                     /gene="yqeH"
                     /locus_tag="U1087_001878"
     CDS             complement(2021..3127)
                     /gene="yqeH"
                     /locus_tag="U1087_001878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000391231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase YqeH"
                     /protein_id="HEM4756320.1"
                     /translation="MEELFCIGCGAQIQTLDKAVAGFTPQSALEKGLETGQLYCQRCF
                     RLRHYNEISDVNISDDDFLKLLHSVGESDALVVNVIDIFDFNGSVIPGLPRFISGNDV
                     LLVGNKQDILPKSVKTGKVTQWLTERAHEIGMRPVDVVLTSAQNKQAIKDLIEKIEQH
                     RKGRDVYVVGVTNVGKSTLINAIIQEITGDKDVITTSRFPGTTLDKIEIPLDDGSYIY
                     DTPGIIHRHQMAHYLTAKNLKYISPRKEIKPKTYQLNPEQTLFLAGLGRFDFVAGERQ
                     GFTAFFDNELQLHRTKLQGASEFYQKHAGSLLVPPTSKELKEFPELVRHEFTINEKTD
                     VVFSGLGWIRVNEKAKIAAWAPKGVDVVIRKAII"
     gene            complement(3128..3655)
                     /locus_tag="U1087_001879"
     CDS             complement(3128..3655)
                     /locus_tag="U1087_001879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqeG family HAD IIIA-type phosphatase"
                     /protein_id="HEM4756321.1"
                     /translation="MSLENYMPDFALEKAYDVTVESLKKHGIKVVFVDLDNTLIAWNN
                     PDGTPEMRQWLHDLQDAGIPVVVVSNNKYERVKRAVEKFGIEFEAFALKPFTFGINRA
                     LKRFDVQPYEVIMIGDQLMTDIRAAKRAGLKSVLVKPLIKTDSINTQINRWRERRTMK
                     KIIAKYGAIDYKREM"
     gene            complement(3839..4213)
                     /locus_tag="U1087_001880"
     CDS             complement(3839..4213)
                     /locus_tag="U1087_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756322.1"
                     /translation="MNPLRKELRTVAVEVSDLALDYAVRLAQSLNSTLRYHNYDSLIA
                     IAKTKGVEPKGKDCQSFSEYRQRYSLYDAKKLIYRALAWRLFDDSHADYGHALTILGL
                     DEDESGVEQIGFAFSKFTLDID"
     gene            complement(4420..5049)
                     /locus_tag="U1087_001881"
     CDS             complement(4420..5049)
                     /locus_tag="U1087_001881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis protein CutC"
                     /protein_id="HEM4756323.1"
                     /translation="MIKEFCSENHVAVVKALSLGAQRVELCDNLAVGGTTPSYGVIKH
                     VCQLAHENEATVMTMIRPRGGDFCYDEAEVEMMVEDCKAAIELGADGLVYGLLTEENW
                     LDEPALERLFAVSQDCQIVFHMAFDQIPRERQFEALDWLVEHGVTRILTRGSLTGSAL
                     NNVEWLQEIVAYAQGKIEILIGGGLTVDNVPTLLEALPINQVHGTRLFW"
BASE COUNT         1422 a         1238 c          963 g         1458 t
ORIGIN      
        1 gaacccatcg agttctttcc cactcccgtt ttctctgtaa agccaagcgt cagcgagtga
       61 acgcacgttg ggagccacga ggcccttgtc ctcctcggct actgtcaagt ccaagacagc
      121 ttgataggag ctttcatcca caggttttaa tacaatcatc cctactcctt caaccaagca
      181 acatagccat tataggtttc caaggtttgt ggataaatgg gaattccctt cttggctaag
      241 taagaaatgg tttgggcagt ttcataggct actgccttgt ccaaggactc ttttgcgata
      301 cgacgcgcct cgtccacccc aggaaaatcc cgattgggtt cgatgtagtc cgccacatag
      361 agcaccttgt ccagcaaggt catctgccca gcaccaatgg tgtgtcgttg aatggcttgg
      421 aaaatttcct catctttcaa gccaaaatct tctgcgattt tataggcgcc aactacaccg
      481 tgccagatgt tattatccca gttgagcagg gccttgtcca aatcatactt ggcaatcaag
      541 tccaaaaaaa cttggtcttc cacttccttg gcatagtcat gcaagagtgc tgccagactg
      601 gcttttttcg gatcacagcc gtatcgatct gccaaggcaa gcgccgcctc ttccacaccc
      661 aagacatgtt ggaagcgcgc tggcttcatg gctacacgga ttttttccaa aagagcttga
      721 cggtcaaagg tcaaatctgc tgcaatcatt ggtaaagtcc tttttcttcg atatagtcca
      781 gaacttcatg aggcaccata aaattcggca cccgtccttg cttgataaag ctccgtacca
      841 tgctggagga aatgtccatc aagggcacat ctacccagat aaccggatag gacgtccctg
      901 ccttgtaacg aggacgctgg acaccaacaa actgcaccaa ctggaccaat tcatcaatcc
      961 tgtgccattt tggaaggtag tctaccatat ctgcaccgat gatgaaataa taatccgtat
     1021 taggattttt ttccttcagc aatttcattg tgtcgtaggt atagctgaca ccacggcgtt
     1081 ctagttcaat ggtttcaatc cccaagccct caatacctgc aatagccatc ttgagcatgg
     1141 aatagcgatg gtattcgtca atggtttctt ttttatccac atgaggcgga atgaattctg
     1201 gcatgagcaa gacttcatcc agcttcaact gttgacggac ctggtctgcc acaatcaaat
     1261 gagcattatg gacagggttg aaattccctc ccagaatccc cacttgtttg cgattggttt
     1321 ctttcttttc aacctctaat tcaaccttgg taaagggtgt taagagttca atagccatag
     1381 gctctccttc ttagatttct ttgacctgtt tagaaatttt acggttctct ttcttgctag
     1441 attgtttgaa taaaatcaag atgcgaccga ttttttggac cgtatccaca ccgatttctt
     1501 cttccaagat ttctgctact tcgtgaatgt tttcatccgt attttgtagc aaggtcacct
     1561 taatcaattc acgcgcatcc aacgcctgac gaacactggt tttaatctgg tcatttagac
     1621 catttttccc aatctgaata atgggtttga gactatgtgc ctgactgttc aaaaaggcac
     1681 gttgttttga agttagcata atttattata caaagggcgt tgtaacagac tgggagactg
     1741 ttacaatcgg gaaataaaga aaacaaagtt tttccttatt gcgccgatat acttagcccg
     1801 tgttcaaatc agaagacttg aacttccttt ctctttaatt gtaaaaactg aaatcaaata
     1861 cctcttatac tcaatgaaaa ttaaaatcag actaggcgac gcagatgcag atagaaccct
     1921 actactttca cgctttcagg tagcaggctg taaagctcca ctggagcttt acactcatca
     1981 aatcaagtca acaacgtctg cttttaattt tcgaagagta ttagataatc gccttgcgaa
     2041 tgaccacatc cacaccctta ggagcccagg cagcaatctt ggctttttca ttgacacgaa
     2101 tccaaccaag tcctgagaag accacatccg tcttctcgtt gatggtaaat tcatgacgga
     2161 ccagttcagg aaattctttc aattccttgc tggttggtgg cactaaaagt gagcccgcat
     2221 gtttctgata aaactcgcta gctccctgca acttggtgcg gtggagttgg agctcattat
     2281 caaagaaggc cgtaaagcct tggcgttcac cagccacaaa gtcaaatcgt cccagaccag
     2341 ccaagaacaa ggtttgttct ggattgagct ggtaggtctt tggcttgatt tccttgcgag
     2401 ggctgatgta cttgaggttt ttagccgtca aataatgggc catctggtga cggtggataa
     2461 ttcctggcgt gtcatagatg tatgaaccat catccagagg gatttcaatc ttatccagcg
     2521 tcgttccagg gaaacgtgaa gtcgtaatga catccttgtc ccctgtgatt tcttgaataa
     2581 tagcgttaat caaggttgac ttgccgacat tggtcacgcc gaccacatag acatcccgtc
     2641 ccttgcggtg ttgttcaatc ttttcaatca aatccttgat agcctgctta ttttgggctg
     2701 aagtcaagac cacatcaacc ggtcgcatgc cgatttcatg tgcccgctcg gtcaaccact
     2761 gagtaacctt gcctgtcttg acagacttgg gtaaaatgtc ctgcttgttg ccgaccaaaa
     2821 gcacgtcatt tccagaaata aagcgaggta aacctggaat gactgaccca ttgaaatcaa
     2881 aaatatcaat gacattaacc accaaggcat cgctttctcc tacgctatgg aggagtttca
     2941 agaaatcatc gtctgagata ttgacatctg aaatctcatt gtaatggcgc aaacggaaac
     3001 aacgttggca gtagagttgc cctgtttcca ggcctttttc tagggctgat tgaggtgtaa
     3061 aaccagcgac agccttgtct agcgtctgaa tctgggcacc acagccgata caaaataatt
     3121 cttccactta catctccctc ttgtagtcta tcgctccata tttagcgatg atttttttca
     3181 tagtccgtcg ctcacgccaa cggttaatct gcgtattgat agagtccgtc tttatcaagg
     3241 gtttgaccaa gacagacttg agaccagctc gcttagcagc ccgaatatcc gtcatcagct
     3301 gatcgccaat cataattacc tcatacggct ggacatcaaa gcgtttcaaa gcacggttaa
     3361 tcccaaaggt gaaaggcttg agagcgaagg cttcaaattc aatcccaaat ttttcaaccg
     3421 cccgtttgac acgttcgtat ttattgttag acaccaccac aacaggaata cctgcgtcct
     3481 gcaaatcatg taaccactgg cgcatctctg gcgtaccatc gggattattc caagcaatca
     3541 aggtattatc caagtcaaca aacactactt ttatgccatg ttttttcaag ctttcgacgg
     3601 tcacatcata agccttttcc aaggcaaaat ccggcatgta attttctaaa ctcactgtcg
     3661 tctccaaagt tttttatcag ataattatac catttttcta agaaaaatgc gaatcgatag
     3721 cagaaaacac tcggatcaac cgagtgtttt ctagaggtaa tgtaatggta gttgtgaatt
     3781 aaatctgacc ttcttccaaa atccaatctt tcggaatgaa aatcatatgg gttagcaatc
     3841 aatcaatatc aagagtaaat tttgaaaaag caaaaccgat ttgctctact cctgactcat
     3901 cctcatccaa ccccaaaatg gtaagagcat gtccataatc tgcatgacta tcatcgaata
     3961 gacgccacgc gagagcgcga taaattaact tcttagcatc atagagactg taacgctgtc
     4021 tgtactctga aaatgattga caatccttac ctttcggttc tactcctttg gttttagcaa
     4081 tggcaatcaa gctatcataa ttatgataac gcaaagtact attcaaggat tgggctaaac
     4141 gaacagcata gtccaaagct aaatcactca cctcaacagc cacagttctc aattctttac
     4201 gtaggggatt caatagagac gcagcagttt ctagtctgta taccggactt taacaaacaa
     4261 aaatgaaaac agccgaacat gtcgactgct tccgtggaga ttatatgaaa aagaataaat
     4321 atattgtatc ttccaatgct taaacaaacc ttaacttcta aacatttctg aataaacttc
     4381 gattattact ctgtaattta tttcactttc aaagctacct taccaaaata atctcgttcc
     4441 atgtacttga ttgattggta atgcttctaa taacgttggc acattgtcca cagtcaatcc
     4501 tccaccaatc aaaatctcaa ttttaccttg tgcataggcg acaatttcct gtaaccattc
     4561 cacattgttc aaggcagacc ctgtcagact cccacgcgtc aaaatccgtg tcactccatg
     4621 ttctaccagc caatcaagag cctcgaattg gcgttcgcga ggaatttggt caaaagccat
     4681 gtgaaagaca atctgacagt cctgcgaaac agcaaacagt ctttccaagg ctggttcgtc
     4741 caaccaattt tcctcggtta acaaaccata aaccagacca tctgccccca gttcaatcgc
     4801 tgctttacaa tcttcaacca tcatttccac ctctgcttca tcgtagcaaa aatctccacc
     4861 gcgagggcga atcatggtca tgactgtggc ttcattctca tgagccagtt gacaaacatg
     4921 tttgatcact ccataactcg gcgtcgttcc gccaaccgct aaattatcac acagttcaac
     4981 tctttgagca cccagagaaa gagctttcac cacagctaca tgattttcgg aacaaaattc
     5041 tttaatcatc tttattcctt tcaagtcttt tttctttagt a
//
LOCUS       DASFRC010000157         5059 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.157, whole genome shotgun sequence.
ACCESSION   DASFRC010000157 DASFRC010000000
VERSION     DASFRC010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5059)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5059)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5059
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.157"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..334)
                     /locus_tag="U1087_001882"
     CDS             complement(<1..334)
                     /locus_tag="U1087_001882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HEM4756324.1"
                     /translation="MDLQELCRKVIQARPRNSHKGSYGRVLLIGGLYPYGGAIIMAAL
                     ASVNSGAGLVTVATEKDNIPALHSHLPEAMVFSFDDQALLISSLENADLVLIGPGFGE
                     NSRAEQLLD"
     gene            432..1055
                     /gene="nth"
                     /locus_tag="U1087_001883"
     CDS             432..1055
                     /gene="nth"
                     /locus_tag="U1087_001883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018378713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HEM4756325.1"
                     /translation="MVLSKKRARKVIEEIIALYPDAKPSLDFRNHFELVCAVLLSAQT
                     TDAAVNKATPGLFAAFPTPQAMAAAEVKDIEPYISRLGLYRNKAKFLKDCAQQLMERH
                     NGIVPQTREELEALAGVGRKTANVVLSVGFGIPAFAVDTHVGRICKHHDIVKKSATPL
                     ETEKRVMEVLPPELWLPAHQAMIYFGREVCHPKNPECEKFPQLYEFD"
     gene            1341..2327
                     /gene="guaC"
                     /locus_tag="U1087_001884"
     CDS             1341..2327
                     /gene="guaC"
                     /locus_tag="U1087_001884"
                     /EC_number="1.7.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017769630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP reductase"
                     /protein_id="HEM4756326.1"
                     /translation="MFNETPVFDYEDIQLIPNKCIINSRSEADTTVTLGKYSFKLPVV
                     PANMQTIIDEDVAEMLAKEGYFYIMHRFDEAGRIPFIKRMHEQGLIASISVGVKEYEY
                     EFVTSLKADAPEFITIDIAHGHAESVIKMIQHIKKELPPETFVIAGNVGTPEAVRELE
                     NAGADATKVGIGPGKVCITKVKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDI
                     AKSIRFGASMVMIGSLFAGHIESPGKTIEVDGEKFKEYYGSASEYQKGAYKNVEGKKI
                     LLPAKGHLKDTLVEMEQDLQSSISYAGGRDITSLKHVDYVIVKNSIWNGDSI"
     gene            2397..3746
                     /locus_tag="U1087_001885"
     CDS             2397..3746
                     /locus_tag="U1087_001885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM4756327.1"
                     /translation="MYQTRNNKEKLWLFIKIFLPILIYQFANYSASFIDTMMTGQYST
                     MDLAGVSMATSLWNPLFSFLTGIVSALVPIIAQYLGKGERDKIREEFHQFVYLAIGLT
                     ILLLCSILFIAVPALAQFGLNESVFQVGRQYLYFISIGILPLLLFSVCRSFFDALGLT
                     QLSMYLMLLLVPFNSLFNYLLIYGKMGLPALGGAGAGLGTALAYWAVLLVIVIVMCKN
                     KTIASYQIWQWSPIDLSLLKEGLKIGLPIGLQVFAEVAIFAVVGLYMAKFSAQIIAAH
                     QSAMNFATLLYAFPASVSSALAIVIAYEVGAKRPQDVKAYSRLGRLVALGFAGLTLTF
                     LYFFRSKVAYLYGNDAEFIRLTSHFLSFALMFQLADAFTAPIQGILRGYKDTTVPFIL
                     GLVAYWSMTFPVAFLLERFFQMGPEAYWIGLISGIFVCGIALNLRLIKIAHSHLSVK"
     gene            3844..4362
                     /gene="rimM"
                     /locus_tag="U1087_001886"
     CDS             3844..4362
                     /gene="rimM"
                     /locus_tag="U1087_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016465641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HEM4756328.1"
                     /translation="MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAKLALFNDK
                     DQFVMEVEIASHRKAKNFDIIKFKGMYHINDIEKYKGFSLKIAEENLTDLEDGEFYYH
                     EIIGLDVYENDQLIGQIKEILQPGANDVWVVKRKGKKDLLLPYIPPVVLNIDIPNNRV
                     DVELLEGLDDEN"
     gene            4352..>5059
                     /gene="trmD"
                     /locus_tag="U1087_001887"
     CDS             4352..>5059
                     /gene="trmD"
                     /locus_tag="U1087_001887"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000686892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HEM4756329.1"
                     /translation="MRIDILTLFPEMFAPLEHSIVGKARDKGLLEINYHNFRENAEKA
                     RHVDDEPYGGGQGMLLRAQPIFDTMDSIEQTKPRVILLDPAGRTFNQAYAEELAQEEQ
                     LIFICGHYEGYDERIKTLVTDEISLGDYVLTGGELAAMTMIDATVRLIPEVIGKEVSH
                     TDDSFSSGLLEYPQYTRPYEYRGMVVPDVLMSGHHENIRKWRLEESLRKTYQRRPDLL
                     ENYNFTAEELTIFEKIKA"
BASE COUNT         1439 a          979 c         1081 g         1560 t
ORIGIN      
        1 agtccaataa ctgttcagct ctgctatttt ccccaaaacc tggaccaatc aataccaagt
       61 cagcattttc taagctactt atcagtaagg cttgatcgtc aaatgaaaat accatggctt
      121 caggcagatg actatgtaag gctggtatgt tatctttttc agtagcaaca gttaccaagc
      181 ctgctccact gttgacgctt gctagtgcgg ccatgataat cgctccacca tagggataca
      241 gtccaccaat cagcaagact cgaccatagc ttcccttatg gctgttgcgt ggccttgctt
      301 gaattacctt tctgcagagt tcttgtaagt ccatacttat tccccctttt ctttttatta
      361 taccacgagg aatgaggttt atgacaatcc agattttaga taaatccaag ttttcatgct
      421 ataatgaatt catggtatta tcaaaaaaac gtgcaagaaa agttattgaa gaaatcatcg
      481 ctctatatcc tgatgctaag cctagcttgg actttcgaaa tcactttgag ttggtatgtg
      541 cagtgctctt atctgctcaa actacagatg ctgcggtgaa taaggcaaca cctggtttgt
      601 tcgcagcttt ccctacgccc caagccatgg cggcagcaga agtgaaggat attgagcctt
      661 atatttctcg tttgggtttg taccgaaaca aggcaaagtt tttaaaagac tgtgcccagc
      721 agttgatgga acggcataac ggcattgttc ctcaaactcg tgaggaatta gaagccttgg
      781 caggagtggg aagaaaaacg gccaatgttg ttttaagtgt cggtttcgga attcccgcct
      841 ttgcagttga tacccacgtg ggacggattt gtaaacacca cgatattgtc aaaaaatcgg
      901 ctacaccctt ggaaacagaa aaacgagtca tggaagtctt acctcctgaa ctctggctcc
      961 ctgctcatca agctatgatt tattttggtc gtgaggtttg ccatcctaag aaccctgaat
     1021 gcgaaaaatt cccacaatta tatgaatttg actaaaaaat cttctgtttt tgaagatttt
     1081 tttagttttt ctgtaaaatt gtttgagtaa attctgaaca ttttttaaaa ttttataaga
     1141 atagtaactc aaaaaagaat tatacgaatg ttatatttta taaacaagcc caaaaagtga
     1201 tatatccgaa tattgtttat ataggtttct tttttattga caaaacacaa acaataagct
     1261 atactatatc ttgtaataag gaaaaaatac gaaaaacaaa ccgtttttct gttccaatgt
     1321 taagaaaaag aggtagaagc atgttcaacg aaactccagt ttttgactac gaagatattc
     1381 agcttattcc aaataaatgt atcatcaata gccgttccga ggcagataca acagtgactc
     1441 ttgggaaata tagctttaaa ttaccagttg ttccagctaa tatgcagact attattgatg
     1501 aagatgtggc agaaatgctt gccaaagaag ggtatttcta catcatgcat cgtttcgatg
     1561 aagctggtcg tattccattt atcaaacgca tgcacgagca aggtttgatt gcttctatct
     1621 ctgttggcgt aaaagaatat gaatatgagt ttgtgactag cttgaaagct gatgctcctg
     1681 agtttatcac cattgatatt gctcatggcc atgcagaaag tgttatcaag atgattcaac
     1741 atatcaagaa agaactgcct cctgagacgt tcgtcattgc aggtaatgtc ggtactccag
     1801 aagcagttcg tgaactagaa aatgctggtg cggatgcgac aaaagttggt attggtccag
     1861 gtaaagtatg tattacaaag gttaagactg gttttggtac aggtggttgg cagttggctg
     1921 cccttcgttg gtgcgcaaaa gctgcccgta aaccaattat tgcggacgga ggtatccgta
     1981 cccacggaga tattgccaaa tccatccgct tcggtgcaag catggtcatg attggttcgc
     2041 tctttgctgg tcacatcgaa agcccaggta aaacaattga agttgatggt gagaaattca
     2101 aagagtacta cggttcagca tctgaatacc aaaaaggtgc ctataaaaac gtagaaggta
     2161 agaaaatctt actccctgcc aaaggacact tgaaagacac tctggttgaa atggagcaag
     2221 atttgcagtc atctatttct tatgcaggag gacgtgacat taccagcttg aagcatgtgg
     2281 actatgttat cgtgaaaaac tctatctgga atggtgactc tatctagtca aagaggactt
     2341 gcaatgcagg tccttttctt gttacaatat ttatataaaa ttgaaagaga ataagtatgt
     2401 accaaacaag aaataacaaa gagaagctct ggctctttat caaaatattt ttgcccattt
     2461 taatttacca atttgctaat tactccgcat cctttatcga taccatgatg actggtcagt
     2521 atagtaccat ggatttggca ggtgtttcca tggcaacaag tctttggaat ccgctttttt
     2581 catttctaac agggattgta tctgcgttgg tcccaatcat cgctcaatat ttaggaaaag
     2641 gtgaaagaga taagattcgt gaggagtttc atcagtttgt ctatctagct atcggattaa
     2701 ccattttact cttgtgctcg atccttttta tcgctgttcc cgccttggct cagtttggac
     2761 ttaatgaatc tgtttttcaa gttggtcggc agtacctcta ttttatttcc attggtatcc
     2821 tgcctctctt gctctttagt gtctgtcgct cttttttcga cgctctcggc ttgactcagc
     2881 tatccatgta ccttatgttg ctcttggttc cctttaacag cctctttaac tatctcttaa
     2941 tttatgggaa aatgggcctc ccggccctgg gcggagctgg agctggattg ggtactgctt
     3001 tagcttactg ggcggtattg ctagtaatcg tcattgtcat gtgcaaaaat aagactattg
     3061 catcttatca gatttggcag tggagtccga ttgacctttc tttattgaag gaaggcttga
     3121 aaattggttt gccgattggt ttacaagtct ttgcagaagt agcaattttt gcagtagtag
     3181 ggctctacat ggcaaaattt tcagcacaga ttatagcagc ccaccagtca gctatgaact
     3241 ttgcgacatt attatatgcc tttcctgcct cggtttcttc agccctagct attgtcattg
     3301 cttatgaagt aggggctaaa cgaccacagg atgtgaaagc ctacagccgt ctgggacgct
     3361 tggttgcact tggttttgca ggcctaacac tcactttcct ttattttttc cgctccaaag
     3421 ttgcctacct ttatggtaat gacgcagaat ttatccgtct gacctcgcat ttcctgagct
     3481 ttgccctcat gttccagtta gcagatgcct ttacagcacc tattcagggg attttacgtg
     3541 gttacaagga tacgactgtt ccatttatac ttggtttggt tgcctattgg tccatgacct
     3601 tcccagtcgc attcttgctt gaaagatttt tccaaatggg tccagaagcc tattggatcg
     3661 gtcttatttc agggattttt gtctgcggaa tagctcttaa tttgcgcttg atcaaaatag
     3721 ctcattctca cttgtccgtg aaataaatta actatgaaag tcggaggcat ccggcttttt
     3781 ctctcttgtg aaaatatctt gctcatgtta aaataaaagg atagaaaatc aaatggagaa
     3841 tttatgaatt attttaacgt aggaaagatt gttaacacgc aaggcctaca aggggaaatg
     3901 cgtgttttat ctgtgaccga ttttgcagaa gaacgtttta aaaaaggtgc aaaattggct
     3961 ttgtttaatg acaaggacca gtttgtcatg gaagttgaaa ttgccagtca ccgcaaagct
     4021 aagaactttg atattatcaa gtttaagggt atgtaccaca tcaatgatat tgagaagtac
     4081 aagggcttta gtttgaaaat tgccgaggaa aacttgactg atcttgaaga cggtgagttt
     4141 tattaccatg aaattattgg tttggatgtt tatgaaaatg accagctaat tggacaaatc
     4201 aaggaaatct tgcaacctgg tgctaatgat gtttgggtgg tcaaacgaaa agggaagaaa
     4261 gacttgctct tgccttatat tccgcctgta gttttgaaca ttgatattcc aaacaatcgc
     4321 gtagatgtgg aattgcttga gggcttggac gatgagaatt gatattttga ccctcttccc
     4381 tgagatgttt gcacctctag aacactctat tgtgggtaag gcgcgtgaca agggcttgtt
     4441 ggaaatcaac taccacaatt tccgagagaa tgctgaaaag gctcgccatg tggacgatga
     4501 accctatggt ggaggacaag gcatgttgct ccgtgcccag ccaatttttg ataccatgga
     4561 tagcattgaa caaaccaagc cacgtgttat cctattggat cccgctgggc gtactttcaa
     4621 tcaggcctat gccgaagaat tggcacagga agagcagctg attttcattt gcggtcacta
     4681 tgaaggatat gatgagcgga ttaagacctt agtaacagat gaaatttctc tcggagatta
     4741 tgtcctgaca ggtggagagt tggcagctat gaccatgatt gatgctaccg ttcgcctgat
     4801 tccagaggtt attggcaagg aagtcagtca tacggatgat agtttttcat cagggctatt
     4861 ggaatatcct caatacaccc gaccatacga gtatcgtgga atggtagttc ctgatgtatt
     4921 aatgagcggt caccatgaaa atattcgtaa atggcgtttg gaagagagcc tacgcaaaac
     4981 ctatcaacgt cgtccagact tgttagaaaa ctacaacttt acagctgaag agttaactat
     5041 ttttgaaaaa atcaaggca
//
LOCUS       DASFRC010000158         5048 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.158, whole genome shotgun sequence.
ACCESSION   DASFRC010000158 DASFRC010000000
VERSION     DASFRC010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5048)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5048)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5048
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.158"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            1..187
                     /locus_tag="U1087_001888"
                     /pseudo
     CDS             1..187
                     /locus_tag="U1087_001888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935801.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(838..>5048)
                     /locus_tag="U1087_001889"
     CDS             complement(838..>5048)
                     /locus_tag="U1087_001889"
                     /inference="COORDINATES: protein
                     motif:HMM:NF017180.1,HMM:NF019216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptidase M26"
                     /protein_id="HEM4756330.1"
                     /translation="ITTDPRPKIIQVGTKVKEIPTITITSIAEDENAKSAEASFELSD
                     RTQSYISAVAQLYQGDQLVREIPITDVTAPLALTGLDYYTDYSLKTIVTYNVGKGPET
                     KLQESTQDFRLDYKKIEIKDIDQVELYGLDNGHYRRQLSLTSETVNLDNYFVKIKSDR
                     FKELLLPISKIEEVEIDGQTKYKLTVETDELVQDTGNQYNKNYSFYVDKRVESQNGIY
                     TSFKELLTAIEANPAGTYTLGADMTADEVDLATDALSYVTSTFTGRLNGAHNGKSYAI
                     YNLIQPLFNVINNATIENVDLIDVAITSKTEKVGALAKTATGSQITNVSVEGSISAPT
                     SIGGLVYLVNGATKITNSSFKGQLVAIGTNSGGSNIGGIVGWAHDNQTTISQVQSDVA
                     ITLSAQNNNYRAGALVGHVQNSARLQDGVAKGTIVNLTTAGQVGGVVGSTWKSGVINN
                     VVSTVQVTNGKRVHGDTAYGSAPITNTFVISSASGAADKWSTEISETEAASKIAAMGI
                     TATVADSLNNQAKNLYSVDYSLLDKATPERAIAYANMEKLLPFYNKEYIVYLANKIAL
                     TDKLAQTRLLDVVPMVGNQIVTDPNSQKRAINRIMLHYADNTVAYLDVAFKEDFVNSH
                     VSDYTIVGTDLLYIPESFLSNYDGMVHRLTNDISSLVFNSDKVKAVLGIVEPTTPPTE
                     NELKNWASDLGVPSTTEQKPLWALYLEDSFNSVRDHLAEDLRKVLASDKAINSLGASV
                     ENYLVQKISQNKEALVLGLAYLKRWYNIDFGDLNTRDLTVFKQDFFGNQATSTLDVII
                     ALGNSGYDNLRPKNNVQTYANSLQLAKGKATLFDYLSSYRQLFVPNKTNNEWLKDTSK
                     AYIVEMASNVEEAAKKQAQATPDSRYALGVYDRITKASWGHQNMLLPLLTLPDESMYI
                     ISTMSTLSFGAYDRYLYDGVSNGMKFEDYMHQMVDRAATWQRNHFDFWYSILSEESRE
                     KLFRSVLNYDGFNFRDSAKKATWKNLQNTERSSIANFFGPVGKWYTANGSGAYATGSL
                     THFVVDRILDQYGTSVFTHEMVHNSDGRIYFEGKGRRQGLGAELFALGLLQAPNGNQA
                     RSLGINTLFTGNEDSMTRYHAADPTERYRSVEDLNTYVHNMFDVIYLLDYLEAKSVLK
                     QSDTVKQKWYRVIDNYYIKDKEKNTHAGNTIRQLTLEEATKLTTINDLVDNSIINRRE
                     YWDTHTGLTRNGYYTVSLFSPVYSALSNPNGSPGDFMFRRMAYELMAEKGYVEGFIPY
                     VSNQLGKEAEAAGELVYDGWFRRNVGLITDNRVFKHIFKDEYADWATFKKAMYQNRIN
                     QLDNLVDFTMTYELDKPNSTKQVTISSFADLEKLMDEAVAQDMKSIDIVLAHNESSWV
                     NVLKQRIYNALLRNTDDFRTSIFK"
BASE COUNT         1472 a         1056 c          918 g         1602 t
ORIGIN      
        1 tcaatttcat gtggaagctg ttggtatgga aagcacaggt gtttattggc gacctgtctg
       61 gcatgctata tgtgatgact tcaagttgat actcgctcaa ccagccaaca tgaaggctat
      121 tccagaacag aaaaccgaca agaaggatgc tcactggata gccaaattaa cacggattgg
      181 tctgctttag gtattcgcag tgtatcgaga atagctagcc tatggattct tcaaaactgt
      241 ccgctgtata aaaaacgacc ttatccctcc taaacaagta gggacaaggt cgtgactgga
      301 acagccgctt ttgtcatatt tatagtcttt taatttactt ttagtactcg cttcaaaggt
      361 ttgggggaac ctttgaaggc tggagatagt gcgaaccaag ttcgcttcaa cagtcgcagg
      421 cataactcaa tgctttttta tttctaggtg gccagctgat gtacttcgct tttttgtttt
      481 caggctcagg tacgaatagt ccactggact attcgtatcc cccagattgc ttgcacagtc
      541 aatggactgt gcaaggtggg agataatact tgcaaagcaa ggcactttta caaaatcagg
      601 caaggcaagt tcaaactacc actcttttaa tgacaggtgg taggctgaaa acctccaatg
      661 gagcttttca gtcgtcgaag taataaaaga aaaactaaat gacgatatat ccacttgaca
      721 gcatgctgtt atctagagtc ttggtttgca agtaacgact tacagataac tttacagtcc
      781 tagaacgata ggggcggaac catttaccat ataaccagtt cgctccttct tctcatacta
      841 tttaaaaata gaagttctga aatcatccgt atttctcaaa agagcattat aaatccgttg
      901 tttgaggaca ttgacccaac ttgactcatt gtgagcaagt acgatatcaa tgctcttcat
      961 atcttgagcc acagcttcat ccataagctt ttctaaatct gcaaaagagc taatcgtaac
     1021 ttgttttgtt gagtttggct tatccaattc gtaggtcatt gtgaagtcaa ccaagttgtc
     1081 aagttgatta atacgatttt ggtacatagc tttcttaaat gttgcccaat cagcatactc
     1141 atctttaaaa atgtgcttga agactctgtt gtcagtgatg agaccaacat ttcgtctaaa
     1201 ccaaccatca tacacaagtt ccccagccgc ttccgcttct ttaccaagtt gattagatac
     1261 ataaggaatg aatccttcta cgtagccttt ttctgccatc aattcatagg ccatacgacg
     1321 gaacatgaag tctcctggag aaccatttgg attagataaa gcggaataaa ctggagaaaa
     1381 gagactaaca gtataataac cattacgagt taagccagta tgtgtgtccc aatattcgcg
     1441 acggttgata atgctgttat caaccaaatc attaatggtt gtcagtttcg tagcttcctc
     1501 aagagtcaat tgacggattg tatttcctgc atgcgtgttc ttttctttat ccttgatata
     1561 gtaattatca atgaccctat accatttctg cttgacagta tcgctttgct tcaaaacaga
     1621 cttagcttct aagtagtcta gcaagtaaat aacatcaaac atgttatgaa cataggtatt
     1681 caaatcttca acactgcggt aacgttccgt aggatcggcc gcatgataac gagtcatgga
     1741 atcctcattt ccagtaaata gagtattaat ccctagcgaa cgtgcctgat taccgtttgg
     1801 agcttgcaat agaccaagag caaataattc tgcccctaaa ccttgacgac gaccttttcc
     1861 ttcgaaataa attcttccat cagagttatg aaccatttca tgggtaaaga cagaagtacc
     1921 atattggtct aatattctat caacaacaaa atgcgttaaa gaacctgttg catacgcacc
     1981 tgatccattc gctgtatacc atttacctac tggaccaaag aagttagcaa tagaagaacg
     2041 ttctgtattt tgtaagttct tccaagtagc ctttttcgct gagtcacgga aattaaagcc
     2101 atcatagttc aaaacagacc gaaagagctt ctcacgtgat tcttccgata aaatactata
     2161 ccagaagtca aaatgattcc gttgccaagt tgctgctcta tcaaccatct gatgcatata
     2221 atcttcgaac ttcataccat tagacacacc atcatacaga taacgatcat aagctccgaa
     2281 tgatagagtt gacatggtag aaatgatata catgctttca tctgggagag tcagaagagg
     2341 taagagcatg ttttgatgtc cccagctcgc cttagtgatg cggtcgtata ctcctagtgc
     2401 gtagcgacta tccggtgttg cttgtgcttg cttcttagca gcctcttcaa catttgaagc
     2461 catttctaca atataggcct tacttgtatc tttcaaccat tcattatttg ttttgtttgg
     2521 tacaaacaat tggcgataac ttgaaagata atcaaataga gtagcttttc cttttgccaa
     2581 ctgtaaagaa ttagcatagg tctgaacgtt attctttgga cgaagattgt cataacctga
     2641 attccccaaa gcaataataa catctaatgt agaggtcgct tgattgccaa agaaatcctg
     2701 tttaaagact gtcaaatctc gagtatttaa atcgccgaaa tcaatattat accaacgttt
     2761 cagatatgca agacccagca ccaatgcttc tttattttga gaaatcttct gaactagata
     2821 attctcaacc gatgcaccta ggctattgat agctttatca gaagccaaca ctttccgtaa
     2881 atcttccgca agatgatcac gtacactatt gaaactatct tccaaataca gtgcccacaa
     2941 tggtttttgt tcagtagttg atggaactcc taaatccgat gcccagttct tcaactcatt
     3001 ttctgttggt ggtgtcgtag gctctacaat tcccaatacc gctttcactt tatctgagtt
     3061 aaataccaaa cttgaaatat catttgtaag gcgatgaacc attccgtcgt agtttgataa
     3121 gaatgattct ggaatatata gtaaatccgt tcctacaatt gtataatcag atacatggct
     3181 atttacaaaa tcttccttga aagcaacatc caaataagca accgtattgt cagcgtagtg
     3241 aagcatgata cgattaatag cgcgtttctg actatttgga tctgttacaa tttgattgcc
     3301 aaccattgga acaacatcta ataatctcgt ttgagctaat ttatctgtca aagcaatctt
     3361 atttgcaagg taaacaatat attctttatt atagaatggt aacagttttt ccatgttagc
     3421 ataggctata gcacgttcag gagttgcttt atctagcaag ctataatcca cactatacaa
     3481 attcttagct tggttgttca gactatctgc taccgtagca gtaattccca tagctgcaat
     3541 tttacttgcc gcctccgttt ctgaaatttc ggtactccac ttatctgcag caccgctagc
     3601 cgaactaatt acaaatgtat tggtaatagg ggccgaacca taggcggtat ctccatgaac
     3661 tcgcttacca ttggttactt gcacagtgct gacaacatta tttataactc cagatttcca
     3721 ggttgagcca actactccac caacctgacc agctgttgtc aagtttacga ttgttccctt
     3781 ggctactccg tcttgtaaac gagcactatt ttggacatgt cctactaaag ctcctgctcg
     3841 gtagttatta ttttgagcag aaagcgttat cgccacatca gattgcacct gactaatcgt
     3901 cgtctgatta tcgtgtgccc aacctacgat tccaccaata ttagaaccac ctgaattggt
     3961 tcctattgct acaagctgac ctttaaagga actattcgta atcttagttg caccatttac
     4021 gagatagaca agccctccga tacttgtggg agctgaaatg ctaccttcta ctgaaacgtt
     4081 cgttatctga cttccagttg ctgttttagc aagtgcaccg actttttctg tcttagaagt
     4141 aatcgcaacg tcaatcaagt ctacattctc aatagttgca ttattgataa cattaaatag
     4201 tggctgaata aggttataga tagcgtacga tttaccatta tgagcaccat tcaaacgacc
     4261 tgtaaaggta gatgtaacat aagagagtgc atctgtagct aagtcaactt cgtcagcagt
     4321 catatctgca ccaagtgtgt aggttcctgc tgggttggct tctattgctg ttaacaattc
     4381 tttgaaagaa gtgtatatac cgttctggct ttctactcgc ttgtccacat aaaaactata
     4441 atttttattg tattggtttc ctgtgtcctg aaccagttca tcagtttcaa cagtcaattt
     4501 atacttggtt tgaccatcta tctctacttc ttcaatttta gagattggaa gaagtaattc
     4561 tttgaaacga tctgatttga tttttacaaa gtagttgtcc aaattgaccg tttcgctagt
     4621 taatgacaat tgacggcgat aatgaccatt gtcaagacca tataactcca cttggtcgat
     4681 atccttaatt tcaatcttct tataatccaa gcggaaatct tgtgtacttt cttgcagttt
     4741 tgtctctggt cccttgccta cgttataggt aacaattgtt tttagactat agtctgtata
     4801 gtaatccaaa cctgtcaatg cgagaggtgc agtcacatct gtaattggaa tttctcttac
     4861 aagctggtct ccctgataga gctgagcaac cgctgaaatg taagattgag ttctatctga
     4921 taattcaaaa ctagcctctg ccgattttgc attttcatct tctgcaatag aagtgattgt
     4981 aattgttggt atttctttta ccttagtacc gacttggata atctttggtc ttggatctgt
     5041 agtaattt
//
LOCUS       DASFRC010000159         5039 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.159, whole genome shotgun sequence.
ACCESSION   DASFRC010000159 DASFRC010000000
VERSION     DASFRC010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5039)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5039)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5039
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.159"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(1..1815)
                     /gene="glmS"
                     /locus_tag="U1087_001890"
     CDS             complement(1..1815)
                     /gene="glmS"
                     /locus_tag="U1087_001890"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019804802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HEM4756331.1"
                     /translation="MCGIVGVVGNTNATDILIQGLEKLEYRGYDSAGIFVTGGEQAHL
                     VKAVGRIAELSAKVGDKTEGTTGIGHTRWATHGKPTEDNAHPHTSQTGRFVLVHNGVI
                     ENYLEMKNDYLAGHDFKGQTDTEIAVHLIGKFVEEDGLSVLEAFKKALHIIQGSYAFA
                     LIDSENPDVIYVAKNKSPLLIGLGDGYNMVCSDAMAMIRETSEYMEIHDKELVIVTKD
                     SVQVTDYEGNAIERGSYTAELDLSDIGKGTYPFYMLKEIDEQPTVMRKLISTYADADG
                     KMIVDPAIVKAVQEADRIYILAAGTSYNAGFASKNMIEALTDTPVELGVASEWAYHLP
                     ILSKKPLFILLTQSGETADSRQVLVRANEMGIPSLTITNVPGSTLSREATYTMLLHAG
                     PEIAVASTKAYTAQVAALAFLSKAVGEANGKQEAIDFDMVHELSIVAQSIEATLSEKD
                     LIADKVEKLLATTRNAFYIGRGTDFYVTLEAALKLKEISYIQTEGFAAGELKHGTISL
                     IEDGTPVIALLSANEKVAAHTRGNIAEVVSRGANTLVVVEEGLDREGDDIVVNKVHPF
                     LSSISMVIPTQLIAYYASFQRGLDVDKPRNLAKAVTVE"
     gene            complement(2008..2550)
                     /gene="lepB"
                     /locus_tag="U1087_001891"
     CDS             complement(2008..2550)
                     /gene="lepB"
                     /locus_tag="U1087_001891"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEM4756332.1"
                     /translation="MVKRDLVKQISLVILLILGLIGLRVWFFEPVTITSQMANDYIKE
                     GDFIVTVRNAKLTHGDFILYKHDGKEYVSRVIAVTDETVTYMDDVLYRDNVIVTESYL
                     KAPHTQESYTEDFTIATLTNGQFESIPKDYILVLNDKRTNHQDSRSFGLTAEKDIIGR
                     LTFRLSPLKEFGFIKTGLVQ"
     gene            complement(2589..3209)
                     /locus_tag="U1087_001892"
     CDS             complement(2589..3209)
                     /locus_tag="U1087_001892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HEM4756333.1"
                     /translation="MSDIMYPEVLTVGSGAIKVATVGDSLTYGYGLENREKDAYPCIL
                     AEKLGHLYQVSNFGLSGRSLQSTSDYPYFNEKNAQLSLESEADIVIIMIGSNDSRGPY
                     WNKERFISEYREMAERYLSLPSQPDLYLVIPPFVPTSRFGLNNQIIEDELQDIIAAIG
                     QELDVPVINLYLLTKGHLEYYSDGLHLTPLGNQVIAEEIYHHLING"
     gene            3295..4404
                     /locus_tag="U1087_001893"
     CDS             3295..4404
                     /locus_tag="U1087_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEM4756334.1"
                     /translation="MKKNVIIIGGGIVGSTAAFYLSQDETVNLTLIDHGVGTATRAAA
                     GIICPWMAQKKNKDWYKLTSEGAVFYRKLVADLESAGAKDIPFKQTGTIGLKSKPELL
                     EKIQKIAEDRRVDTPTIGQITSLQGEEISDYLPPLKPDFYGIHLEGGGRIDGGRLIDI
                     LQEEVLKNGGALLQGQAKLLDAHTVQLDGQELTADHIILATGAWLPHILEPLGYRVNV
                     RPQKGQLLELDTKHDTNNWPVCMPYGQIDILPFEKGKIIVGATHEDDMGYDLTLDPEK
                     IQAMQVKAAEFMPDLANYSVARTRIGTRAYTSNYAPFYGNIEDMKNVWVASGLGSSGL
                     TNGPFIGWQIAQEILGKETSFDRSAYSPTNYIKKQ"
     gene            complement(4443..>5039)
                     /locus_tag="U1087_001894"
     CDS             complement(4443..>5039)
                     /locus_tag="U1087_001894"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756335.1"
                     /translation="SSVSHELPVGHLSLHGSSVTHELPVGALSSSEDLVADKLEHVTA
                     EKTEIEQAGRGIFNQIISLSNEYSGKISIRPTLNMRENGYKNTNISSELIVEQETVGQ
                     ANSTGLPRAFNQSSEPDFQFEKDSEKEQVTPSTSISSNNQNLGKGSEKAVAKGDEADS
                     QEKETADQTPYLIAFSLLGIGAVGYWLLFHKMIKVDKS"
BASE COUNT         1453 a         1168 c          974 g         1444 t
ORIGIN      
        1 ttattcaacc gtaactgctt ttgcaaggtt acgcggttta tcgacatcca gaccacgttg
       61 gaaggatgca tagtaggcaa tcaactgagt tgggatcacc atagagatgc ttgacaagaa
      121 tggatgcacc ttgttaacaa cgatatcatc accttcacgg tccaagcctt cttccaccac
      181 gaccaaagtg ttcgcaccac gggaaactac ctctgcgata ttaccacgcg tgtgagcggc
      241 aactttttca ttggcagaaa gcagagcaat aactggagta ccgtcttcaa tcaaggagat
      301 ggttccgtgt ttcaattctc cagccgcaaa gccttctgtt tgaatgtaag aaatttcttt
      361 taacttgaga gctgcttcaa gagttacata aaaatctgta ccacgaccga tatagaaagc
      421 attgcgagtg gttgccagga gtttctcaac cttgtctgca atcaagtctt tctcagaaag
      481 ggttgcttcg atagactggg caacgattga caactcatgt accatgtcaa agtcgattgc
      541 ctcctgcttg ccattggctt caccgacagc ttttgacaag aaggcaaggg cagccacctg
      601 agcagtatag gccttggttg aggctaccgc aatttcagga cctgcatgga gtaacatggt
      661 gtaagtcgct tcgcgagaaa gtgttgagcc aggtacgttt gtaatagtca aacttggaat
      721 gcccatttca ttggcacgca ccaagacctg acggctatct gctgtttcac ctgactgggt
      781 caagaggata aagagtggct tcttgctaag aattggcaag tggtaggccc attcagacgc
      841 cacacccaac tccacagggg tatctgtcaa ggcttcaatc atgtttttgg aagcaaaacc
      901 tgcattgtaa gatgttcccg ccgccaagat atagatacgg tctgcttctt gcacagcttt
      961 cacgattgca gggtcaacta tcatcttacc gtccgcatct gcataggttg aaatcaactt
     1021 acgcataaca gtcggctgct cgtcaatttc ctttagcatg tagaacggat aagtcccctt
     1081 accgatatca gacaagtcca attcagccgt gtagctgcca cgctcaatgg cattgccttc
     1141 gtagtcagtc acttgaacac tgtctttggt cacaattacc aattctttgt catggatttc
     1201 catatattca ctggtttcac gaatcatcgc catggcatct gagcagacca tgttgtatcc
     1261 atcacccaaa ccaatcaaaa gcggagattt gtttttagca acgtagatga catcaggatt
     1321 ttcagaatcg atcaaggcaa aggcataaga accttggatg atatgaagag cttttttgaa
     1381 ggcttccaat acagacaagc catcttcttc tacgaatttc ccaatcaaat gaacagcgat
     1441 ttctgtatct gtctgaccct tgaaatcatg accagccaag tagtcgtttt tcatttcgag
     1501 gtagttttcg atcacaccgt tgtgaacaag tacaaaacga cctgtttgtg aggtatgtgg
     1561 gtgggcattg tcctcagttg gtttaccgtg agttgcccag cgagtatgac cgattcctgt
     1621 tgttccctca gtcttatcgc ctaccttagc agacaactct gcaatgcgac ctactgcttt
     1681 taccaagtga gcctgctccc cacccgttac gaaaatacct gctgaatcat aaccacggta
     1741 ttctaacttt tcaagacctt gaatcaaaat atcagttgcg tttgtattac ctacaacacc
     1801 aacaattcca cacatattct atcaccttca attcgaacga attgaacttt cttaaaatta
     1861 tcttaaattg gtatagtctg atttttttgt ttaaaaatca gtaaaatcag tatataacaa
     1921 ctttttgtac ttgtcaacat tttaattggt atagtcagat tgttggattt caaatccaaa
     1981 cagttcaaca attaataaaa gctgattcta ctgaaccagc cctgttttta taaatccaaa
     2041 ttcttttaag ggacttaagc ggaatgttag tctcccaata atatcttttt ctgcagtcaa
     2101 tccaaaacta cgactgtcct gatgatttgt cctcttatca ttcaaaacta aaatataatc
     2161 tttaggaatg gactcgaatt gtccattcgt caaggtagca attgtaaaat cttccgtata
     2221 actttcttgt gtatgcggtg cttttagata ggattctgtt acaatcacat tatctctata
     2281 caagacatca tccatatagg ttacagtttc atcagtaact gcaatgactc gactgacata
     2341 ctcttttcca tcatgtttat aaagtatgaa atcaccatgt gtcagtttgg cattgcgaac
     2401 ggtaacaata aagtcacctt ctttgatata gtcatttgcc atctgggatg tgatggttac
     2461 tggttcaaag aaccatactc tcaaaccaat caatcctaaa atcaacagaa tgaccaaact
     2521 gatctgcttt actaaatctc tctttaccat aatctctcca atcaatacta ttataccata
     2581 aactcaggct atccattgat aagatgatgg tatatttcct cagctatcac ttgatttcca
     2641 agaggtgtca agtgcaagcc atcgctataa tattccaaat gccccttggt taagagataa
     2701 agattgatga ctggcacatc caattcctga ccaattgctg caataatgtc ttgtaattca
     2761 tcctcgataa tctgattatt cagtccaaaa cggctggttg gcacgaaagg tggaataacc
     2821 aagtatagat ctggttgact aggtaaactc aagtaccgct ctgccatttc cctatattcg
     2881 ctaataaatc gctccttatt ccagtatgga ccacggctgt cattgctacc aatcatgata
     2941 atgacaatgt ccgcttcgct ctcaagggac aactgggcat ttttctcatt gaaataggga
     3001 taatccgacg ttgactgaag cgaacgtcca ctcaaaccga aattggacac ctgataaaga
     3061 tgccccagct tctctgctaa aatacaggga taggcatctt tttcacggtt ctccagtccg
     3121 taaccgtaag tcaggctatc gccaactgtt gcaactttta tggccccact tccaacggtt
     3181 aggacctctg gatacataat atctgacacg tgaactcctc tgtttttctt atttatctat
     3241 tgtaccatct tgaaaaaaat aaatatactt ctgaatttgt gatataatga acatatgaaa
     3301 aaaaacgtga taattatagg cggagggatt gtcggctcaa ctgccgcttt ctacctctcc
     3361 caagatgaaa ctgtcaactt aaccctcatt gaccatggtg tcggcactgc tactcgtgca
     3421 gctgccggga ttatctgccc ttggatggcc caaaagaaaa ataaagattg gtataaactg
     3481 acttccgaag gcgcagtctt ctatcgcaaa ttggtcgcag atttagagtc tgctggagcc
     3541 aaggacatcc ctttcaagca aactggaact atcggcctga agagcaagcc agaattgcta
     3601 gaaaaaatcc aaaagattgc ggaagaccgc cgtgtagata ctcccaccat tggtcaaatt
     3661 acaagcttgc aaggcgaaga aatcagcgat tatctcccac cgctcaaacc tgacttttac
     3721 ggcattcatt tagaaggagg cggccgtatc gatggtgggc gtttgattga cattttgcag
     3781 gaagaagttt tgaaaaatgg cggagcgctt ctacaaggac aggcaaaatt gctagacgct
     3841 cacactgtcc aactagatgg acaagagctg acagccgacc acatcatcct ggctactgga
     3901 gcctggctac cacatatcct agaaccactt ggttatcggg tgaatgtccg accacagaaa
     3961 ggacaattgt tagaattaga caccaaacac gacaccaaca actggccagt ctgcatgccc
     4021 tatgggcaaa ttgacatatt gcctttcgaa aaaggtaaaa tcatcgtcgg agctacacac
     4081 gaggatgata tggggtatga cctgacactt gacccggaaa aaattcaagc tatgcaagtt
     4141 aaggcagccg agtttatgcc agacctagcc aactattccg ttgccagaac acggatcgga
     4201 acccgtgcct acacttcaaa ctatgcacca ttttatggca atatcgaaga catgaagaat
     4261 gtttgggttg ctagcggtct aggttcctct ggtttgacaa acggtccatt tatcggctgg
     4321 caaatcgccc aagaaatctt agggaaggaa accagcttcg accgctctgc ctattctcct
     4381 actaactaca ttaaaaaaca ataatatagc tgaaaggcca ctcgctctga gtagcctttt
     4441 ttctatgact tatcaacttt aatcatcttg tgaaaaagta accaataacc tactgcccca
     4501 atacctagca gagaaaaggc tattaaatag ggagtttggt cagccgtttc tttttcttga
     4561 ctatccgcct catccccctt agctactgct ttttcactcc ctttgcccag attttgattg
     4621 tttgaactga tacttgtgga aggggtgact tgttccttct ccgaatcctt ttcaaactga
     4681 aaatccggtt ctgatgactg attgaatgcc cttggtaaac ctgtactatt agcctgacca
     4741 actgtctctt gctccacgat tagttcgcta gaaatgttgg tatttttata tccattctca
     4801 cgcatattta gtgtaggtct aattgaaatt tttcctgaat actcattaga caaggaaata
     4861 atctggttaa agattcctct tccagcctgc tctatttccg ttttttcagc agtcacatgt
     4921 tctaacttgt cggccaccaa atcctcagaa cttgacaaag ctcccacagg caattcatgc
     4981 gtgacagaag aaccatgaag agacaagtga ccaactggta attcatggct gactgaaga
//
LOCUS       DASFRC010000160         4999 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.160, whole genome shotgun sequence.
ACCESSION   DASFRC010000160 DASFRC010000000
VERSION     DASFRC010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4999)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4999)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4999
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.160"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(146..856)
                     /locus_tag="U1087_001895"
     CDS             complement(146..856)
                     /locus_tag="U1087_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM4756336.1"
                     /translation="MKALIFDVDDTLYDQIQPFERALERHIEVAREQIEPLYLSFRRY
                     ADEVFEATAIGKMSLKDSHIYRMKHALADFGYQVSDATALAIQIDYDYFQGQIELSPV
                     FPEIFSWCQAQGIAMGIITNGPYRHQLRKIRTMGLVNWFELEHVLISGQVGITKPNPA
                     IFQLMEERLGMSGEDICYLGDSFENDIIGAKTAGWQAVWFNHRKRSEPESSFQADYMI
                     DEWFNLDSLIKNIIKPIG"
     gene            complement(910..2649)
                     /locus_tag="U1087_001896"
     CDS             complement(910..2649)
                     /locus_tag="U1087_001896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4756337.1"
                     /translation="MTILGFLLRQIRRVKWLFIVAVGFYLLASTMVRLAPLLIQQAID
                     GPITDLSKGLPFDEAVFLNQSVQYMGMIILGAIGFYLSMRLLMHCANRIAENLRNQAY
                     DVMQRLPISYFDDKPAGKIATRIVNDTETLRTQFYGTLVNAFNNIVRLLFTYGVLFYM
                     NRSLGWLMLLLIPLYIGIQFAYKKMTDKPMKDFYDARSDVNTQVNETMNGASLIQLFG
                     QEERIMKEFEVTADKMRRADNKIIWAQSLATWNLSGFLQNLVIAAILTVVGYQFLAGQ
                     DGVTAGKLFVYVNYIEGVFIALGALVQQFPNMLRSFETGKRLMALLEEELEDDCDRIL
                     EVEQGQVVFEHVNFSYEENRPVLKDITIRSEKGETVALVGHTGSGKSSIMNLLYRFYD
                     PQEGRVLIDGKNIRDYSRESLRSHMGIVLQDPYLFTGTIASNVSMNEEEADRTRIMQA
                     LEKVGAGPMLSRLEKGIDEPVVEKGAAFSSGERQLIAFARTLYSDPKILILDEATSHI
                     DTETEEIIQHAMEVVKEGRTTFIIAHRLSTIQNADQILVLDQGRIIEHGKHEELVARG
                     GVYAQMHEIQAKV"
     gene            complement(2649..4376)
                     /locus_tag="U1087_001897"
     CDS             complement(2649..4376)
                     /locus_tag="U1087_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4756338.1"
                     /translation="MFRLIFDYIKRHKWLYLLVAVTLIIYDATLLLPTQIIQRMVDIL
                     TKNELTQAILVQEMTLLLLVTVLNYATAFIWHLKLFQASVNFKFDMQQRAFKKLVTMR
                     TPFYEKFRSGDVMTRFSTDVDGLMEMVGYGLMIVVYAGGMLAFIIPTMFFIDWKISLV
                     ALLPMLFMTLCIFFIGRKQDKAIDANREAVAQLNNEVLEVIEGIRVTRAYSKKANQKA
                     QFQARTKQLAQGGDRITSLQSLYNPLATVCLGLSTIFVLLMGAQAVKAGQLTLGQVIA
                     LQLYVGSLLEPFWTLADFILVYQTGKTSFEKLQELIETGDDLEADGSKEIAELSSISF
                     KNYSFSYPQAERASLQDINWTLKAGQTVGIVGKTGSGKTTLVRQFLRQYPIGQGNFFI
                     NHQSVLDFKRSSIEEKIGYVPQEHILFSRSVGENISLGKVASSSEEIEQAIATAAFSQ
                     DLKRMTDGLDTMIGERGVSISGGQKQRISIARAFLREPDLLILDDSLSAVDARTERQI
                     IQNIQKERAGKTNVIVTHRLSAVNHADWVLVLDEGRIVEEGRPADLLAQRGWYYEQYQ
                     RQQSQEGGE"
     gene            complement(4845..4917)
                     /locus_tag="U1087_001898"
     tRNA            complement(4845..4917)
                     /locus_tag="U1087_001898"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4882..4884),aa:Thr,seq:ggt)
BASE COUNT         1529 a         1165 c          877 g         1428 t
ORIGIN      
        1 ggaaataaga aaacggagtt tcctcttgcg tcgaagtaat taaagataaa ctaaatgact
       61 atacctcctc tttttgaaca caaaaactcc cccgactagc ttctaatcct attaaaaact
      121 tgttaggaga gttattccat tttatttatc caatcggctt tatgatgttt ttgataaggg
      181 aatccagatt gaaccattcg tcaatcatat aatctgcctg aaaggaactt tctggctctg
      241 accgttttct gtgattaaac cagaccgctt gccaaccagc tgtttttgcc ccgatgatgt
      301 cattttcaaa cgaatcccct agataacaaa tatcttcgcc tgacatcccc aaacgttctt
      361 ccattagttg aaaaatagca ggatttggct ttgtaatacc aacttgtcca gaaataagga
      421 catgttctag ctcaaaccaa ttaactaacc ccatcgtgcg tatctttctc aactgatgtc
      481 tataaggtcc attcgtaata atccccattg caattccttg cgcctgacac cacgaaaata
      541 tttctggaaa cactggactg agctctatct gcccttgaaa ataatcataa tctatttgaa
      601 tagctaaggc tgttgcatca gacacctgat acccaaaatc tgccaaagca tgtttcatcc
      661 gataaatatg actgtctttc aaactcatct ttccaattgc tgtcgcttca aatacttcat
      721 ccgcatatct gcgaaaggaa aggtagagtg gttcaatttg ctcccttgct acttcaatgt
      781 gtctttccaa agcacgttca aacggttgaa tctgatcata aagcgtatca tctacatcaa
      841 aaattaaggc tttcatgagt caattatagc aaaaaattcc agccaaagct tggaattttt
      901 aactgcttat tacacctttg cttgaatctc atgcatttga gcatatactc caccacgtgc
      961 aaccaattct tcatgcttcc catgttcaat aattcgacct tgatctaaga caagaatctg
     1021 gtctgcattt tgaatggtag aaagtcggtg ggcaatgata aaggttgtcc gaccttcttt
     1081 caccacttcc atggcatgtt ggataatttc ttccgtctcc gtatcaatat gagaagttgc
     1141 ttcatccaat atcagaattt taggatcaga gtagagtgtc cgcgcaaagg caatcaactg
     1201 acgttcccca cttgaaaagg ccgccccctt ctcaacaacc ggttcatcaa tccctttctc
     1261 taagcgagat agcataggcc ctgcaccaac tttttctaac gcctgcatga ttcttgttct
     1321 atctgcttcc tcttcattca tggaaacatt gctggcaatc gtccctgtaa agagataggg
     1381 atcttgcaaa acaatcccca tgtgactgcg caggctttca cgagaataat cacggatatt
     1441 tttcccatca atcagtacac gtccctcctg tggatcatag aaacgataga ggaggttcat
     1501 aatagaagac ttaccagacc cagtatgccc aaccagagca actgtttctc ctttttctga
     1561 ccgaatggta atatctttca aaactggtct gttttcttca tagctaaagt tcacatgttc
     1621 aaacacgact tgcccttgtt caacttccaa aatacgatca cagtcgtcct ccagctcttc
     1681 ttctagaagg gccattagac gcttacctgt ttcaaacgag cgaagcatat ttgggaactg
     1741 ttgaaccagc gctcccaaag caatgaagac tccttcgata tagttgacat aaacaaagag
     1801 tttcccagct gtaactccat cctgtcccgc aagaaattga tagccgacta ccgttaaaat
     1861 cgcagcaatg accaaatttt gaagaaaacc actcagattc cacgtggcaa gagactgggc
     1921 ccagataatc ttattatctg cccgacgcat cttgtcagca gtcacttcaa attctttcat
     1981 gatgcgctct tcttgtccaa aaagttgaat caaacttgca ccattcatgg tctcattcac
     2041 ctgcgtattg acgtcactcc ttgcatcata aaaatccttc atcggcttgt ctgtcatttt
     2101 cttgtaagca aattgaatac cgatatagag tggtatcaag agtaacatca gccaaccaag
     2161 actcctattc atgtaaaata ggacaccgta tgtaaagagc aaacgaacaa tattgttaaa
     2221 ggcattaact aaggtcccat aaaattgtgt ccgcagagtt tctgtatcat tgacaattct
     2281 agttgcaatt tttccagcgg gcttatcatc aaaataagaa ataggcaacc gttgcataac
     2341 atcataggct tgattacgta gattttcagc aatacgattg gcgcaatgca tgagtaaacg
     2401 catagatagg tagaagccaa tagctcccag aataatcatt cccatgtatt gaactgactg
     2461 gtttaagaaa acagcttcat caaaaggcaa acccttgctc aaatccgtaa tcggcccatc
     2521 aatcgcctgc tgaatcagta gaggagccaa tcgaaccatg gtcgaagcca atagatagaa
     2581 gccgacagct actataaata gccacttgac tcgacggatt tgtcttaata aaaaacctaa
     2641 aatagtcatt actctcctcc ttcctggctt tgttgtcgtt ggtattgttc atagtaccaa
     2701 cctctttggg caagcaaatc agctggacgc ccttcctcaa cgatacgccc ctcatccaag
     2761 actagtaccc aatctgcatg gttgacagca gatagacgat gggtcacgat gacattggtt
     2821 ttgcctgcac gttctttttg aatattttgg ataatctggc gttctgtccg agcatccact
     2881 gccgacaaag aatcatctag aattagcaaa tctggctctc gcaggaaagc acgggcaatg
     2941 gaaatccgtt gtttctgacc gccagaaata gacacaccac gctcaccaat catggtatca
     3001 agaccatcag tcatccgttt taaatcttga ctaaaagctg ctgtggcaat ggcttgttca
     3061 atctcctcag agctactagc tactttcccc agggaaatat tttctccaac agaccttgaa
     3121 aacaaaatgt gttcttgtgg aacatagcca attttttcct ctatactaga acgtttaaag
     3181 tctaaaacag attgatgatt gatgaaaaaa tttccctgac caatcggata ctggcgtaag
     3241 aattggcgaa ccaaggtcgt ttttcccgaa ccagttttcc caacgatacc tacagtttgc
     3301 cctgctttca gtgtccaatt gatatcctgt aggctggctc tttccgcctg tggataacta
     3361 aagctataat ttttgaagga aatactagac agctctgcaa tttccttaga accatcagcc
     3421 tccaaatcat cacccgtctc aatcagctct tgcagttttt cgaaagatgt cttaccagtc
     3481 tgataaacaa ggatgaaatc tgctagtgtc caaaacggct ctaaaagcga accgacatac
     3541 aattgaaggg caattacttg tcccaaggtc agttgccctg ctttcacggc ttgtgccccc
     3601 atgagaagta cgaaaatagt agacaatccc aaacagactg tggctaatgg attatacaat
     3661 gattgcaagg aagtgatgcg atccccacct tgagccaatt gcttggtacg agcttgaaat
     3721 tgagcctttt gatttgcttt tttactataa gcccgagtca ctcgaatgcc ttcgatgacc
     3781 tccaaaactt cattattgag ctgggctaca gcttctctat tggcgtcaat cgccttatct
     3841 tgttttctcc cgataaaaaa tatacatagt gtcatgaaca gcatcggtag taaagctact
     3901 agcgaaattt tccaatcaat aaagaacatc gtgggaatga taaaagccaa cataccgcct
     3961 gcatagacga caatcataag accgtaaccc accatctcca tcaggccatc cacatccgtt
     4021 gaaaaacgag tcatgacatc tcctgagcgg aatttttcat aaaatggagt ccgcatggtc
     4081 actaattttt taaaggcacg ttgctgcata tcaaacttga aattgacaga ggcctgaaat
     4141 aatttcagat gccaaatgaa ggctgttgca tagttcagca ctgttaccaa taacaataag
     4201 gtcatctcct gaaccaatat ggcctgtgtt aattcattct tggttagtat atcgaccatc
     4261 cgctgaatga tttgcgttgg tagcaaaagt gtggcgtcat aaataatcaa ggtcacagca
     4321 accaatagat agagccactt atgacgcttg atatagtcaa aaattaatcg aaacatatat
     4381 ctcctttaca aatccataac ctatcatttg ccactttatt caataagcta caattgatag
     4441 accttacttt tctaagctaa gcgcacaaaa aagcccaggg aagcatctca ctccacctag
     4501 gcttgcgtaa gtccacaaaa atagaccagc tcttgaacat agtcgacaat ttttatcaca
     4561 ccatacccac agtgcttgat tgtctcaatg tttcaaaata tagcccacga aaaacgacaa
     4621 aagttcatca atgagctttg ttttcctgct tagaaaggag tgtatgataa aaaatagctt
     4681 gctgaatgac aagttgcttg ttcatttgtt ttactccttt catatttcta agccctattc
     4741 taccataata aatattcatg tcaagggatt tttgacaata agggcgaatt taggacaaaa
     4801 ataagaaaaa accttgtcaa acaaggcctt tcgatagtat tcgatgctag ttgccgggat
     4861 tgaaccggcg acctcatcct taccatggat gcgctctacc gactgagcta aaccagcagt
     4921 acttgactag tatatcatat ctctaaaaaa agtcaatgga ttttttggaa atattgagaa
     4981 aaataaagag aaaataagc
//
LOCUS       DASFRC010000161         4992 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.161, whole genome shotgun sequence.
ACCESSION   DASFRC010000161 DASFRC010000000
VERSION     DASFRC010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4992)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4992)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4992
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.161"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(63..608)
                     /locus_tag="U1087_001899"
     CDS             complement(63..608)
                     /locus_tag="U1087_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEM4756339.1"
                     /translation="MTNVLFLVGSLRDGSFNHQMAKKAEAFLADKAQVSYIDLAKIPL
                     FNQDIETPILPEIAELRAQVDAADAIWIFSPVYNYAIPGIVKNALDWLSRSLDLSNPK
                     GPSILQDKITTVSAVANSGHDHLFKDFQHLLPFIRTQIAGEFTGSTINPEAWGTGVLE
                     LSDETLAKLEQQAADLLAAIQ"
     gene            complement(671..1120)
                     /locus_tag="U1087_001900"
     CDS             complement(671..1120)
                     /locus_tag="U1087_001900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM4756340.1"
                     /translation="MRTVEQSLNENKHALHSLVVFRRAANTITKSELETIKKYGLTVC
                     QFGVMEALYNKGNLRIQDLIDKLLSTSGNMTVVIKNMIRDGYIYKTIDTNDRRASLIA
                     LTPLGRETIEKILPEHYDHVGEIFSVLSSEEQDQLAEILKKFKNQQT"
     gene            1334..1831
                     /locus_tag="U1087_001901"
     CDS             1334..1831
                     /locus_tag="U1087_001901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5590 domain-containing protein"
                     /protein_id="HEM4756341.1"
                     /translation="MEKKIFQLLEVLATKKGQLIAGSFILLSVMTFSIFVIWDLAAKP
                     FSDVQNHAISVARDYTDIEVVDDVSIYNGTETYFTLQGKTSQGEMIAVIIPEETNTVY
                     VYPMANGISKEEAQAIAKKNGAIQVERTILGLRDGKPIWEVKSGTAYYLVEFETGNFI
                     KREGL"
     gene            1828..3009
                     /locus_tag="U1087_001902"
     CDS             1828..3009
                     /locus_tag="U1087_001902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002267262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEM4756342.1"
                     /translation="MSKLSRRVLEMEESVTLAAGARAKALKAEGRDILELTLGEPDFV
                     TPKNIQEAAIKSIEDGKASFYTVASGLPELKDAVNTYFEKFYGYSIERNQVILATGAK
                     FVLYAFFAAVINPGDEVLIPTPYWVSYADQIKMNEGVPVFVTATEEHNFKVTVDQLEA
                     ARTDKTKVLLLNSPSNPTGMIYSREELEAIGNWAVEHDILILADDIYGRLVYNGNTFT
                     PISSISESIRQQTIVVNGVAKAYAMTGWRVGFAVGNPEIIAAMSKIVGQTTSNLTTAA
                     QYAAIEAFTGPQDTVETMRQAFEERLNTIYPLLAEVPGFEVIKPEGAFYLFPNVKKAM
                     EMKGYTDVTEFTTAILEEVGVALVTGAGFGAPENIRLSYATDMDTLKEAVARLHIFMK
                     K"
     gene            3024..4370
                     /gene="asnS"
                     /locus_tag="U1087_001903"
     CDS             3024..4370
                     /gene="asnS"
                     /locus_tag="U1087_001903"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000038477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HEM4756343.1"
                     /translation="MSRKLITINQVKDYVGQEVTIGAWVANKSGKGKLAFLQLRDGTA
                     FFQAVAFKPNFIEKFGEEAGTEKFDVAKRLSQETSVYVTGIVKEDERSKFGYELDVTD
                     LEVIGESQDYPITPKEHGTDFLMDNRHLWLRSRKQVAIQQIRNAIIYATYEFFEKNGF
                     IKFDSPILSGNAAEDSTELFETDYFGQPAYLSQSGQLYLEAGAMALGRVFDFGPVFRA
                     EKSKTRRHLTEFWMMDAEYSFLSHEESLDLQEAYVKALIQGVIDRAPQALETLERDVD
                     ALKRYIAEPFKRVAYDDAITLLQEHEADEDTDYEHIEHGDDFGSPHETWISNYFGVPT
                     FVVNYPASFKAFYMKPVPGNPERVLCADLLAPEGYGEIIGGSMREDDYDALVAKMDEL
                     GMDKSEYEFYLDLRKYGSVPHGGFGIGIERMVTFVAGTKHIREAIPFPRMLHRLHP"
     gene            4474..>4992
                     /locus_tag="U1087_001904"
     CDS             4474..>4992
                     /locus_tag="U1087_001904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM4756344.1"
                     /translation="MKQESLGKEIIRLALPATVENIFQTLVGFVDTLLIAQLGLVAVT
                     AVGLANTILNVYLAVYMALGVGSTALIARSIGAGDRESLTFHVRQALVLSVGVGMLFG
                     LLSLVFGRQMLVLMGADAESLTGAQAFFYWVGGLTILQALMTILGTILRASGDTVSPM
                     KMSLLTNGFNLVL"
BASE COUNT         1390 a          975 c         1173 g         1454 t
ORIGIN      
        1 ttgagtatga aatgctctca aaatattaat caaaaaaaaa acagaaattc tggttttttt
       61 gattattgaa ttgctgccaa caggtcagct gcctgttgct cgagttttgc tagagtttcg
      121 tcagataact ctaacacacc tgttccccat gcttctggat tgatggttga acctgtaaat
      181 tcaccagcaa tctgagtacg gataaatgga agaaggtgtt ggaagtcttt gaataggtgg
      241 tcgtgaccac tgtttgcgac tgcagagaca gttgtgattt tatcttgtag gatagatggt
      301 ccttttggat tggataaatc gagcgaacga ctgagccaat cgagagcatt ttttacgatg
      361 cctgggattg catagttata tactggtgag aaaatccaga tagcatccgc agcgtctact
      421 tgtgcacgta gctcagcgat ttcaggaagg ataggtgtct cgatgtcttg gttgaatagg
      481 ggaatttttg caagatcaat gtaagatact tgagccttat cagccaagaa cgcttcagct
      541 tttttggcca tttgatggtt aaaagaaccg tcacgtagtg aaccaactaa aaacaatacg
      601 tttgtcatga tggcctcctt ttcataaaaa cataaattta gtatatcgta tttgtctttt
      661 gttggcaatc ctaggtctgc tgattcttga attttttaag tatctcggct aattggtctt
      721 gttcttctga actaaggaca gaaaaaatct ctccaacgtg atcataatgc tctggaagga
      781 ttttttcaat ggtttcgcgt ccaagtggag tgagagcaat caaggaagca cgacggtcat
      841 ttgtatcgat agtcttgtag atataaccat ctcgaatcat gttttttata acgacagtca
      901 tgttgccaga tgtacttaat aatttatcaa ttaagtcttg aatccgcaga tttcctttgt
      961 tgtagagtgc ctccatcact ccaaactgac aaactgtcag tccgtatttt ttgattgttt
     1021 ctaattctga ttttgtgata gtattagctg ctctgcgaaa gacgactaga ctgtgaagtg
     1081 catgcttgtt ctcgtttaaa gattgttcaa cagttctcat gagaatattt tagcaataaa
     1141 tagttcggtt atcaagcaaa aaaagttaaa tcctatattc ataggtaaag tactttatat
     1201 agcatggagg agctgaactg tgggtcccag ttcttatatt cgttctctgt ctgaaggaga
     1261 atgaaagttt attcacaatt caattacgga aaaaatggaa atatgcttta acttgtagta
     1321 taataggact actatggaaa aaaagatttt tcaacttttg gaagtattgg caacgaagaa
     1381 gggacagctg atagctggtt cctttatact ccttagtgtc atgacttttt cgatattcgt
     1441 tatttgggac cttgcagcta agcctttttc tgatgtgcag aatcacgcta tttctgtagc
     1501 tcgagactat acggatatag aggttgttga tgatgtctct atctacaacg ggacagaaac
     1561 atactttacc ctacaaggaa agacgagtca gggggaaatg attgcggtta tcattcctga
     1621 agagacaaat actgtgtacg tttatccaat ggcgaatggt atttctaagg aagaagcgca
     1681 agctattgcc aagaaaaacg gtgcaatcca agtagagcga actattctag gtttaaggga
     1741 tggcaaacct atttgggaag tcaaatcagg cactgcctac tatttagttg aatttgaaac
     1801 agggaacttt atcaaacggg agggcttatg agcaagttat caagacgagt cttagagatg
     1861 gaagaaagtg taactctggc agcaggtgcg cgtgcaaaag ccttgaaggc ggaaggacgt
     1921 gatattttag agctgacctt gggtgagcca gacttcgtca caccgaaaaa tattcaagaa
     1981 gctgctatta agtctatcga agatggtaag gcgagttttt atacggtagc ttcagggctt
     2041 cctgagttga aggatgcggt caatacctac tttgagaagt tctatggcta ctctatcgaa
     2101 cgcaatcaag tcattcttgc gacaggtgct aagtttgttc tttatgcctt ctttgcggca
     2161 gtcatcaatc ctggcgatga ggttctgatt cccacacctt actgggtttc ctatgccgac
     2221 cagattaaga tgaacgaagg cgtgccagtc tttgtcactg ccacagaaga gcataatttc
     2281 aaggtaacgg ttgaccagtt ggaagcggct cggacagaca agaccaaggt gctcctgctc
     2341 aacagcccgt ccaacccgac tggcatgata tacagtcgtg aagaattgga agctattgga
     2401 aactgggctg tggaacacga tattctcatc ttggcagacg atatttacgg tcgtttggtc
     2461 tataatggaa ataccttcac accgatttca agcatttcag agagcattcg ccagcagact
     2521 attgtggtca atggggtggc caaggcctat gccatgacag gttggcgggt tggatttgct
     2581 gttggtaatc ctgaaatcat tgcagccatg agtaagattg tcggacaaac gacgtcaaac
     2641 ttaacaaccg ctgctcagta tgcggccatt gaagccttta caggtccgca agatacagta
     2701 gaaaccatgc gtcaggcctt tgaagagcga ctcaatacca tttatccctt gctggcagaa
     2761 gtaccaggtt ttgaggttat caagccagaa ggagccttct atctcttccc aaatgtcaaa
     2821 aaggccatgg aaatgaaggg ttatacagat gtgaccgaat ttaccactgc tatcttggaa
     2881 gaagtaggag tagccttggt gacaggtgca ggttttggtg ctcctgaaaa tatccgcctc
     2941 agctatgcga cagatatgga cacgctcaaa gaagcagtgg ctcgactaca catatttatg
     3001 aaaaaataaa aagaggaaaa ataatgtcta gaaaattgat taccatcaac caagtaaaag
     3061 attatgtcgg tcaagaagtg accatcggtg cctgggttgc caacaagtca ggcaagggca
     3121 agttagcctt cctgcaattg cgtgacggaa cagccttttt ccaagcagtt gccttcaagc
     3181 caaacttcat cgaaaaattc ggtgaagaag ctggtactga gaagttcgat gtagcaaaac
     3241 gtctcagtca agaaacgtct gtctatgtga cagggattgt caaggaagac gagcgttcta
     3301 agtttggtta tgagctagat gtgacagacc ttgaagtgat cggtgagtca caagattacc
     3361 caatcacacc aaaagaacac ggtacggact tccttatgga caaccgccac ctctggttgc
     3421 gttctcgtaa acaggtcgct atccagcaaa tccgtaacgc catcatctat gcgacttatg
     3481 aattctttga aaagaatggc tttatcaagt ttgatagccc aatcttgtct ggaaatgcgg
     3541 cagaagattc aacagaattg ttcgaaacag actactttgg tcaaccagct tatctcagtc
     3601 aatcaggtca gctttaccta gaagctggtg ctatggctct tggtcgtgtt ttcgacttcg
     3661 gtcctgtttt ccgtgcggaa aaatcaaaaa ctcgccgcca cttgactgag ttctggatga
     3721 tggatgccga gtattcattc ctcagccatg aagagtcact tgacttgcaa gaagcttatg
     3781 tcaaagcctt gattcaaggt gttatcgacc gtgctccgca agccttggaa actctggagc
     3841 gtgatgtgga tgctctcaaa cgctacattg cggagccatt caaacgtgtg gcttatgatg
     3901 atgccattac ccttcttcaa gagcatgaag cggatgaaga tacagactac gaacacatcg
     3961 agcatggtga tgactttggc tcaccacatg aaacttggat ttcaaactac tttggtgtac
     4021 cgactttcgt tgttaactat ccagcaagct tcaaggcctt ctacatgaag ccagttccag
     4081 gtaatccaga gcgcgtgctt tgtgcggacc tcttggctcc agaaggctac ggtgaaatca
     4141 tcggtggttc tatgcgtgag gacgattacg atgccttggt agccaagatg gacgagctcg
     4201 gcatggacaa gtcagagtac gaattctacc ttgaccttcg taaatacggt tctgtaccac
     4261 acggtggttt cggtatcggt atcgagcgta tggtaacctt cgtcgctggt acaaaacaca
     4321 tccgtgaagc cattccgttc ccgagaatgt tgcatcgctt gcatccataa gcaaatcaat
     4381 agatatacaa acagactaca catgtggtct gttttcttgc tttttcactg agttttattt
     4441 ataattattc taaataaaat cgtggagagg aaaatgaagc aagaaagttt aggaaaagaa
     4501 attattcgtt tggccttgcc tgctacggtg gaaaatatct ttcagacctt agttggtttt
     4561 gtggataccc tcttgattgc acagctgggg ctggtagcgg tgacggcagt tggtcttgcc
     4621 aatacgattt tgaatgtcta tttggcggtc tatatggctt tgggagttgg gtcaacagct
     4681 ttaattgctc ggtctattgg cgcaggagat agggaatctc ttacctttca tgtccgtcaa
     4741 gccttagtac tttcagtagg tgtaggtatg ctatttggtt tactatccct tgttttcggg
     4801 aggcagatgc tggtcttaat gggagcagat gcggagagtt tgactggcgc ccaggcattt
     4861 ttttactggg ttggtggttt gactatttta caagctctga tgaccatttt gggaacaatc
     4921 ctgcgggcat ctggtgatac agtatctcct atgaaaatga gcttactgac caatggtttt
     4981 aatcttgtct tg
//
LOCUS       DASFRC010000162         4987 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.162, whole genome shotgun sequence.
ACCESSION   DASFRC010000162 DASFRC010000000
VERSION     DASFRC010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4987)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4987)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4987
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.162"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(65..658)
                     /locus_tag="U1087_001905"
     CDS             complement(65..658)
                     /locus_tag="U1087_001905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEM4756345.1"
                     /translation="MMQIKWRDCLLICFGAILYALVLNMLIIPHEFGEGGITGVTLLL
                     FYTTGIETSLSSFVLNGILIVLAYRFLSKLTVFYTFLAVATMSLTMHYTTFLQIKWLP
                     LIPSALLAGLMTGLSMALVIYGNGSTAGSDIIALLCNKYFKWKISTVILIFDVFVVTP
                     LAFKIGLVKTFWTLVMVVIISKSLDWFLQALKKNNHK"
     gene            complement(736..1119)
                     /locus_tag="U1087_001906"
     CDS             complement(736..1119)
                     /locus_tag="U1087_001906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HEM4756346.1"
                     /translation="MGLFSGLLGNASQMDNDKIEQELEHVLLDNEQVEMAFSLVRDLI
                     VFTEYRLILVDKQGMTGKKVSYKSIPYRSISRFTVETSGHFDLDAELKIWISSAVEPA
                     EILQFKSDKSVIAIQKALASAVLGK"
     gene            complement(1207..3783)
                     /locus_tag="U1087_001907"
     CDS             complement(1207..3783)
                     /locus_tag="U1087_001907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pneumococcal-type histidine triad protein"
                     /protein_id="HEM4756347.1"
                     /translation="MKKKTTLFALTGIILSCHLFLAGCQKTENTAINHQDVQSSNISK
                     VDENTIVVSEIKSNGYMRLYGEESYFFEGPIPYAAHFLKDTLPDSDYKLNKEDIQYQL
                     EKGYIIKVNEQYFYYPKDKDANVISISEAKKLTKNQKKPTSQAKKGVAGVDYPTDDGF
                     LFENEGQILSKTDEGLVLEHNGHSHFIFYKDLKESKWSYLVPKEYIENSQSSSHSNAK
                     QAKLSQTFDDGYVFDPKDIVAEDANGYTVRHGDHYHYIWKSSLQYGQGNTGETIGKKG
                     QITVLDNHSLHTPTTRNNFVPLKSTTEKGHTSTQSNSKKAFPGIDYPTSDGFLFDGSG
                     VQGQTALGLLIGHGTHTHLLPYSHLIGSPWESYIPTQYLETARAEYHSSTSTQVDVEI
                     PLSPQEGGKPNSSVEEEREAKKSYLAENLHVSKEKIKVIETDAGPAFVYPHGDHSHTI
                     LIEKVEVGKPIEDPHGDPHAHDKIGMATLKQLGFDDEIIEDILHATADTPFPSNETDS
                     EKMREWLKTVKYLNIGQRKDPLKRAGLDLMPNVEVLGIGFTPIDDVKPILQFKKLKQL
                     WMTSTGVKDYQFLKEIPTLEGIDLSQNGVFDLGFLEEFPNLKVVSAAGNDIEDITILA
                     KLKALESLNLDHNKVTDLSPLADLSQLTAVSLDNNRITDLSAFQNKKKLTRLYISQNP
                     QLDISTLKTENLEELTANESNVKDLQFVKNNPNLTSLTLKNNKITELQGIEENEKLVN
                     LDVEGNQIKTLEIEGKQESVVRLNVADNQLKNLEGVNDYKALEDLNASKNDIETLAIT
                     EPNKTLKTIDVSENHIPKEELNLNDQKIPSAIAEHFPAVEGGSIENNQPKEVDKEAKE
                     SE"
     gene            4168..4920
                     /locus_tag="U1087_001908"
     CDS             4168..4920
                     /locus_tag="U1087_001908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756348.1"
                     /translation="MENTATQAFEELVAEQKKKRNRVLRIIITLFTAIIVFFACLTLF
                     KYNSGNISGTWRNSQAEQDIVKTSIKELQNQLPGIDKTWIDATYTMTVVDKKAVFTAT
                     TSFDIPKIAKLTLDQAYKVMLEEAQKEASSLGISVEEYLTTALGADYEKQLKSFLPTQ
                     AEAEKEFHKYQDEYAKELGATYNQETGTISATFFEGDVDQLFHTVTITKINDAAIKQL
                     TTYDISVKDIISYSRKGNTTIINGNEEFTLEK"
BASE COUNT         1596 a          991 c          792 g         1608 t
ORIGIN      
        1 ttcattcgac tataagaaaa gagaaaacta gttatacatg cacaactggg tttctcttgt
       61 atttttattt atgattattc tttttcaatg cttgcaagaa ccagtccaaa cttttactga
      121 taatgacaac cattaccaat gtccaaaatg tttttacaag cccaatttta aaagccaaag
      181 gagttaccac aaatacatca aaaatgagaa taacggtgga aatcttccat ttgaaatatt
      241 tattacacaa caatgcaata atatcacttc ctgctgtaga cccgtttcca taaatgacta
      301 gagccattga taaacctgtc atcaatcccg ccaagagagc agagggaatc aggggcaacc
      361 attttatttg cagaaaagtc gtataatgca tggttaagga catagtagca accgctaaga
      421 aagtatagaa aaccgttaac ttactcaaaa agcgataggc taatacaatc aaaatcccat
      481 tcaaaacaaa actggacaga cttgtttcaa tccctgtcgt ataaaacaaa agtagggtaa
      541 caccagtaat cccaccttcg ccaaattcat gtggaatgat gagcatattc aaaacaaggg
      601 catataggat tgccccaaaa catatcaata agcagtctct ccattttatc tgcatcatat
      661 tctctcctca caaacagtcc accttagtat atcaaaaaaa gcagaaagag gatagccact
      721 ttctgtactt ttttcctatt ttcctaagac agctgaagcc agtgcttttt gaatagcaat
      781 gacactctta tcgctcttaa actgaagaat ttcagcaggt tcaacagccg atgaaatcca
      841 tattttcagc tcagcatcta ggtcaaaatg accagaggtt tctactgtaa agcgtgaaat
      901 tgagcggtaa ggaatcgatt tataagatac ctttttccca gtcattcctt gcttatcgac
      961 caaaatcaat cgatattctg taaaaacaat caaatcacga accagactaa atgccatctc
     1021 aacctgttca ttatccagta gaacatgctc caattcctgt tcaatcttat cattatccat
     1081 ttgcgaggca ttacctagta aacctgaaaa tagtcccata atatgactcc tttggtattt
     1141 ttctatagta taacacaaaa agctactagt tgactatctt aggtagctct ttaccaaaca
     1201 cgagaattat tcgctttcct ttgcttcctt atcaacttct ttaggttgat tgttctcaat
     1261 actgccacct tcaactgctg gaaaatgttc tgcaatcgca gatgggatct tctgatcatt
     1321 tagatttaat tcttccttcg gaatgtgatt ttcactcaca tcaattgttt tcaaagtctt
     1381 atttggctct gtgatggcaa gtgtttcaat atcatttttt gaagcattca ggtcttctaa
     1441 ggctttgtaa tcattgactc cttctaaatt cttcaattga ttatctgcaa catttaatcg
     1501 aacaaccgat tcttgtttac cctctatttc caaagtctta atttgattcc cctctacatc
     1561 cagatttact aatttttcat tttcttctat cccttgtaat tcagtaatct tattattctt
     1621 aagagtaaga ctagttaaat ttggattgtt ttttacaaac tgaagatctt ttacattact
     1681 ttcattagct gtcagttctt ctaaattctc tgtttttaga gttgatatat ccaattgagg
     1741 attctgtgat atatacaaac gggttaactt cttcttgttt tgaaacgcag ataaatctgt
     1801 gatacgatta ttatctaaac taacagctgt caattgtgac aaatctgcta atggggataa
     1861 atccgtcact ttattatgat ctaaatttaa agattccaaa gcttttaatt tagctagaat
     1921 agtgatatct tcaatgtcat ttcctgcagc agaaactact tttaagtttg gaaattcttc
     1981 caaaaagccc aaatcaaaaa caccattttg tgataagtca attccctcta atgttggaat
     2041 ttctttcaaa aactgataat ccttaacgcc tgtgctagtc atccataatt gtttcaattt
     2101 tttaaattgc aagataggtt ttacatcatc aattggcgta aaaccaatcc ctaacacttc
     2161 aacatttggc atcaagtcca gaccggctct ctttagcgga tcttttcgct gaccaatatt
     2221 tagatatttt accgttttta accactctct catcttctcg gaatctgttt cattagatgg
     2281 gaaaggagta tcggccgtag catgcaaaat atcttcaata atctcatcat caaaacctaa
     2341 ttgttttaaa gtagccattc caattttatc atgagcatgt gggtcaccgt gagggtcttc
     2401 gattggtttt ccaacttcaa ctttctcaat caagattgta tgagaatggt caccatgagg
     2461 gtaaacgaaa gcaggtcctg catctgtttc tatcaccttg attttttctt ttgaaacatg
     2521 caggttttcg gctaagtagc tctttttagc ttctcgttct tcttctacac ttgagttagg
     2581 tttcccacct tcttgtggtg acaacggaat ttctacatca acttgagtgg aagttgacga
     2641 atggtattct gctctagcag tctctaaata ctgagtagga atataagact cccacggact
     2701 tcctatcaaa tgactgtacg gaagtaaatg agtatgagta ccatggccaa tgagtaaccc
     2761 taacgctgtt tgaccttgga ctccgctacc atcaaaaagg aaaccgtcgc ttgttggata
     2821 atcaatacct gggaaagctt tctttgaatt agactgagtg gaagtatgcc ctttttctgt
     2881 ggtagacttg agtgggacga aattatttct tgtggtcgga gtatgcaacg aatgattatc
     2941 aagaacagta atctgtccct tttttccaat ggtctcccca gtatttcctt gtccgtattg
     3001 caaacttgat ttccaaatat aatgataatg atctccatga cgtaccgtat agccattcgc
     3061 atcttcagcc actatatcct tcggatcaaa tacataacca tcatcaaaag tttgtgatag
     3121 cttcgcttgc tttgcgttgg aatgcgagct ggattggcta ttctcaatgt actctttggg
     3181 taccagatag gaccatttgc tttcttttaa atccttatag aagataaaat gtgaatgacc
     3241 attatgttct aagaccagtc cctcatccgt ttttgaaaga atttgacctt cattttcaaa
     3301 aagaaatcca tcatccgtag gataatcaac accagctacc ccttttttag cttgagaagt
     3361 aggtttcttt tgatttttgg tgagtttctt agcttcagaa atagaaatta cattagcatc
     3421 tttatccttg ggatagtaga agtactgctc atttactttt ataatataac ctttctctag
     3481 ctgatactga atatcttctt tattcaattt ataatcagaa tctggaaggg tatcttttaa
     3541 aaagtgtgcc gcatacggga tcggaccttc aaaaaagtat gactcttctc catatagacg
     3601 catatagcca ttagatttaa tttcagacac tacaatcgta ttttcatcta cttttgagat
     3661 attgctactt tgaacatctt gatgatttat tgcagtattc tctgtttttt ggcaacccgc
     3721 caaaaaaaga tgacaagata ggataatgcc tgtcaaggca aataaggttg ttttcttttt
     3781 catttttgtc ctcctaagct cattaaccag ttaacaatta actagtatac attttatttt
     3841 tgatttttgc aagaaaaaac aactgacaat gattgttcgt gaataaattt tccattccac
     3901 gacaaacgca tgaaaaactt gttttataaa ccatattttc acgactgctg tcagttttta
     3961 gtagaaaaat gtaatataat agccttggaa atgggggtat ccttgttaaa gtgcaagttt
     4021 tacaaaaacc tttaaaaaaa tgcatacgac aaaaaaatag ttacatacct ttttcttcat
     4081 gcggattgca tgtttccatc cctacgacca ttgacaaagc aaacaaacta tagtatatta
     4141 aaaataggga aataaaagga gaatattatg gaaaacacag ctactcaagc tttcgaagaa
     4201 ctcgttgcgg aacagaaaaa gaagcgtaat cgcgtcctta gaattattat cacactcttt
     4261 accgctatta tcgtattttt tgcctgtctt acattattca aatataatag tggcaacatt
     4321 agcggtacat ggcgcaattc ccaagctgaa caagacattg tcaaaaccag tatcaaggag
     4381 ttacaaaatc aacttccagg tatcgataaa acgtggattg atgcaaccta tacgatgaca
     4441 gtcgtagata agaaagctgt cttcaccgct acaacaagct ttgatattcc taaaatcgca
     4501 aaattaacct tggatcaagc ctataaggtg atgttagagg aagcacaaaa agaagcaagt
     4561 tctctgggaa tttccgtaga agaatactta acaaccgctc tcggagcaga ctatgaaaag
     4621 caattgaaat catttctacc tacacaagct gaggcggaaa aagaatttca taagtaccaa
     4681 gacgaatatg ctaaagaact aggcgccaca tacaatcaag aaactggtac tatctctgct
     4741 acctttttcg aaggagacgt cgatcagctc ttccataccg tgaccattac aaaaattaat
     4801 gacgcagcaa tcaaacagct gactacatac gatatttccg taaaagatat tatttcctat
     4861 tctcgcaagg gaaataccac cattattaac ggaaatgaag aatttacttt agaaaaataa
     4921 taaaaaaagc tgggaaagtc atccctgatg gttccgacct cacccacaga ataatgaaaa
     4981 taaatat
//
LOCUS       DASFRC010000163         4934 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.163, whole genome shotgun sequence.
ACCESSION   DASFRC010000163 DASFRC010000000
VERSION     DASFRC010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4934)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4934)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4934
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.163"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(14..703)
                     /locus_tag="U1087_001909"
     CDS             complement(14..703)
                     /locus_tag="U1087_001909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM4756349.1"
                     /translation="MNRLGNVKDWNVVKNWKFLLVGLAVVALNVLTQMAMFTLPNFDG
                     NNILIAAALLLLAVVLGLILTGKLGLWKGEQKWGMGANVGFVALAFIVMFGLKIIGGQ
                     LIMLEEGYGQTTANQEIINNSGLPTLVLFLFTVFFAPVLEELLFRGILMGKVFGKDSI
                     VGLLLSSFLFGFIHNPTNIGSWVVYGGMGLVLGLAYRISGKYTNALVLHSLNNLLGFL
                     LMLLMQSLGLI"
     gene            complement(729..914)
                     /locus_tag="U1087_001910"
     CDS             complement(729..914)
                     /locus_tag="U1087_001910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756350.1"
                     /translation="MKVFMKIYLVLLIGLGMYAVDYTFGEWLATGQIDLSTLNILLPM
                     VLGLPALLLIEKESNEN"
     gene            complement(934..1443)
                     /locus_tag="U1087_001911"
     CDS             complement(934..1443)
                     /locus_tag="U1087_001911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3278 domain-containing protein"
                     /protein_id="HEM4756351.1"
                     /translation="MKKENLHIRAIRYFYDIVGELDEASYATLTNFGNNMYMLFMTVT
                     LVSFLVSFALGEDVMGISLFLTLVYSQFKQDAIIKQLGLDKLFVAKADVKLARKKMMK
                     RTLFQTLQIAVYSLLVSIGIWQFHIPQESGTSAAEYFQFVTPMTVVFLTLVGFLSFYI
                     VNRKKIKLI"
     gene            complement(1474..2232)
                     /locus_tag="U1087_001912"
     CDS             complement(1474..2232)
                     /locus_tag="U1087_001912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3169 family protein"
                     /protein_id="HEM4756352.1"
                     /translation="MKQGKQISTKQRWMRYSAYMLISAILGGFIGFFGVLIFKFNPPS
                     YLNLDNFLICLRIVTFVIFAGTVYLGLKANQSYKLYHSISDEDEERVDELYKKMYRNL
                     EYATISFNVAVSLTLLNLVLGFGVTFLEDSAVMYGSIFDLVFYIILLVSQVFIIKLTQ
                     KIREYKLSAFATVKEMKDFAEAMDEGEKQANYEMSFQIVFTLNQIVLPGLYLFLFVLS
                     MLLQERQITAFLVVAFLHIYINVMQVRMIRRYFK"
     gene            complement(2229..2444)
                     /locus_tag="U1087_001913"
     CDS             complement(2229..2444)
                     /locus_tag="U1087_001913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM4756353.1"
                     /translation="MEYVLKNRLKELRARDSLNQTELAKLAEVSRQTISLIERGEYTP
                     SVVIAMRIAQIFNENVENVFQLVEVGE"
     gene            complement(2457..3023)
                     /locus_tag="U1087_001914"
     CDS             complement(2457..3023)
                     /locus_tag="U1087_001914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3267 domain-containing protein"
                     /protein_id="HEM4756354.1"
                     /translation="MEAKKKLFEVNIMENKKFVWGLNILAVVLIFPFAFVFGMIGSLL
                     IANGSQYSELVMSEVWLLFPFYILLIVVHEAIHGIFFKVFCPENPVKYGFKWKSGMAY
                     ATSPGSLYNRMQMLVISLAPFVVISLGLTMLAGFGMMNTTLYFMLATMHAASCAGDFY
                     YAYLLLVKFAKENIAVEDTETGLIIYQA"
     gene            complement(3169..3366)
                     /locus_tag="U1087_001915"
     CDS             complement(3169..3366)
                     /locus_tag="U1087_001915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756355.1"
                     /translation="MKQPFMITGTTVARAVEIGSILLLAYILLSDLLGWSDMDTALLT
                     TLIASITCIEASLQMEKKGNK"
     gene            complement(3565..4113)
                     /locus_tag="U1087_001916"
     CDS             complement(3565..4113)
                     /locus_tag="U1087_001916"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4014 domain-containing protein"
                     /protein_id="HEM4756356.1"
                     /translation="MILVFYFLLQVMNILFICLIISYQIWNYLLIIPLYLILRFINYE
                     ICRLLGYYALDEMGRFGYGTKEVLYPRFRKIEQVYRKKYNQRSRKHQLIYYAGFVMIY
                     SVSFPFLIIVAMFVTEAVKSMIGENSGEVIIGVFIMSILLLVTLVYGKLQSYKRNYAK
                     WFNLEIIMWEHGHPVFREKKRE"
     gene            complement(4172..>4934)
                     /gene="alaS"
                     /locus_tag="U1087_001917"
     CDS             complement(4172..>4934)
                     /gene="alaS"
                     /locus_tag="U1087_001917"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027193.1"
                     /note="Catalyzes a two-step reaction, first charging an
                     alanyl molecule by linking its carboxyl group to the
                     alpha-phosphate of ATP, followed by transfer of the
                     aminoacyl-adenylate to its tRNA; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEM4756357.1"
                     /translation="NEQIWNAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTIGD
                     YSVELCGGTHVSNTAEIGIFKILKEEGIGSGTRRIVAVTGREAFLAYRDQEDALKEVA
                     VTIKSPQIKEVPNKVESLAQQVRDLQKENAALKEKAAAAAAGDVFKDVKEANGVRYIA
                     SQVQVSDAGALRTFADNWKQKDYSDVLVLVAAIGDKVNVLVASKSSDVHAGNLIKVLA
                     PIVAGRGGGKPDMAMAGGSDASAIQTLLNSVAENL"
BASE COUNT         1575 a         1127 c          834 g         1398 t
ORIGIN      
        1 ccatcctatc ctcctatatc aagcccagac tttgcatcag tagcatcaac aaaaatccga
       61 gaagattatt cagactgtgt agaacaagtg cattggtata tttgccagaa atacgatagg
      121 cgagtcccag gaccaggccc atacctccgt agacaaccca agatccgata ttggtcggat
      181 tgtgaataaa tccaaacaga aaactcgata gcaataatcc cacaatcgaa tccttaccaa
      241 agactttccc cataagaatc cctctgaaaa gcagttcctc caaaactgga gcaaagaaaa
      301 ctgtaaagag aaacaaaact aaggttggca agcctgaatt attgatgatt tcctgattgg
      361 cagtcgtttg accatatccc tcttccagca taatcaattg cccaccaatt attttcaaac
      421 caaacataac gataaaggcg agggctacaa aaccaacatt cgcccccatc ccccacttct
      481 gctcaccttt ccacagacct aatttaccag tcaagataag accaagcacc acggctaaca
      541 acaaaagggc tgcagcaatc aatatgttat tcccatcaaa atttggtagg gtaaacatag
      601 ccatctgggt caatacatta agggcaacga cagctagtcc cactaagaga aacttccaat
      661 ttttaaccac attccaatct ttgacatttc caagtctatt catagcaatc tccttcacat
      721 acactaagtc agttttcatt actttctttt tcgatcaata gcagagcagg caagcccaaa
      781 accatcggca agaggatatt cagggttgac aaatcaatct gcccagtagc cagccactct
      841 ccgaaagtat agtcaactgc gtacatacca aggccgatta ataggacaag ataaattttc
      901 ataaacactt tcatgagttg acctccatct aaactaaata agtttgattt tcttacggtt
      961 aacaatatag aaactaagga atccaactag tgtcagaaag acaactgtca tgggagtgac
     1021 aaattggaaa tactccgctg cagatgttcc actttcctgt ggaatatgga actgccagat
     1081 accaatacta actagcagac tgtagacagc aatctgtaga gtttgaaaca gagttcgttt
     1141 catcattttc ttccgagcca atttcacatc agcctttgca acaaacaatt tatccagacc
     1201 caactgtttg ataatggcgt cctgtttgaa ttgagaataa accaacgtca aaaagagact
     1261 gattcccatg acatcctctc ccagcgcaaa gctaactagg aagctcacca gtgtcactgt
     1321 cataaagagc atatacatat tgttgccgaa attggtcaag gtcgcataag acgcctcgtc
     1381 taactcacca acaatatcat agaaataacg aattgctcga atgtgtagat tttccttttt
     1441 catagctatc acctaaaact ctttcaaaaa tccttattta aaataacgac ggatcatgcg
     1501 aacctgcatg acattgatgt aaatgtgaag aaaggcaaca actagaaagg ctgtaatttg
     1561 tcgctcctgc aatagcatgc taagcacaaa taggaataga tacaaacctg gtaacacgat
     1621 ttgattcaaa gtgaagacga tttggaaact catttcgtag tttgcttgtt tctcaccttc
     1681 gtccatcgcc tcagcaaagt ccttcatttc ttttaccgta gcaaaagcag aaagcttata
     1741 ttcacgaatt ttctgagtta atttaataat aaatacttga gaaacaagaa gtatgatata
     1801 gaaaactaag tcaaaaatcg atccatacat gaccgcactg tcttctaaga aggtaacacc
     1861 aaatcctaga accaaattta acagagtcaa tgatacggca acattaaatg atatggtcgc
     1921 gtattctagg ttacgataca ttttcttata tagttcatca acacgttctt catcctcatc
     1981 tgaaatggaa tgataaagtt tatacgattg attggcctta agcccaagat atacagtccc
     2041 agcgaaaatt acaaacgtaa cgatacgtaa acaaattaga aagttatcta aattgagata
     2101 agaaggtggg ttgaatttaa agattaatac tccaaagaaa ccgataaaac cacccaaaat
     2161 tgctgaaatc agcatatacg ctgaatatct catccatctt tgtttcgttg aaatttgttt
     2221 cccctgtttc attctcctac ctccactaat tgaaaaacat tctccacatt ttcattaaaa
     2281 atttgagcaa ttcgcatggc aatgaccacc gagggcgtat attctcctcg ctcaatcaag
     2341 ctaatagtct gccgtgatac ttctgctaac tttgccaact ctgtctggtt gaggctatcc
     2401 cgtgccctca actccttgag ccgatttttt aagacatatt ccatgagttt tcctttctag
     2461 gcttggtaga taatcaagcc tgtttctgtg tcttcaacag ctatattttc cttggcaaac
     2521 ttgaccaata agagataggc atagtagaaa tcgcctgcac aagaggccgc atgcatggtt
     2581 gccagcataa agtaaagagt ggtattcatc atcccaaatc ctgctaacat ggtcaagccc
     2641 aaactaatca caacaaaggg agccaagctg attactagca tttgcatccg attgtagagc
     2701 gaacctggac tggtcgcata ggccataccc gatttccatt taaacccgta tttgacagga
     2761 ttttcaggac aaaaaacttt gaagaagatg ccgtggatag cctcatgcac aactattaaa
     2821 agaatataga aagggaaaag caaccatacc tccgacatga ccagttccga gtattgcgaa
     2881 ccgttagcta tcaacaaact tcctatcatt ccaaatacga aggcaaatgg aaagatgagc
     2941 accacagcaa gaatattcaa tccccacaca aacttcttat tttccatgat attgacttca
     3001 aataatttct ttttcgcttc catgtttcct ctccttcatt tgcctacaag ctagactaaa
     3061 ctatatagtc ctagaccaac tccaatcagt aagccgaaaa taattgctcc tgtaatcata
     3121 atcgctgccc tatctgctga aatgtatcgt ttcatggtct atctccttct acttatttcc
     3181 ttttttctcc atttgtaaac ttgcttcaat acaagtaatt gaagcaatta gagtagtcag
     3241 tagagctgtg tccatatcgc tccatcccag caaatcagaa aggagaatgt aagccaataa
     3301 tagaattgac cctatttcga ctgcacgcgc aacagttgtt cctgtaatca taaaaggttg
     3361 tttcatttgg tgactccttc tctattcatc gtatcagact aatccttttg atttttatct
     3421 tgatattatt gtaacacttc cttttctttt tgacaactat ctttgtcgaa aaaacaacaa
     3481 tttttgtcaa aaagtttatg aagtttgtca aaatgtagca aatattagtc aggatagcca
     3541 aaattcatta aaaaagaagc aagattactc tcgcttcttt tctctaaaga ctggatgtcc
     3601 atgttcccac atgataatct ctaaattaaa ccacttagca taatttcttt tataactttg
     3661 tagcttgcca tacaccagag taactaaaag aagaatgctc atgataaata ctcctatgat
     3721 tacttcccct gaattctcac caatcatcga tttgaccgcc tcagtaacaa acattgcgac
     3781 gataatcaga aaaggaaaac taaccgaata aatcataaca aaacccgcgt agtaaattag
     3841 ctggtgcttt ctgcttcgct gattgtattt cttcctatag acttgctcta tctttctaaa
     3901 acgtggatag aggacttcct ttgtaccgta tccaaagcgc cccatttcat ccaaggcata
     3961 atatcctaac aggcggcaaa tttcataatt tatgaaccgt aagatgagat agagaggaat
     4021 aattaataga taattccata tctgatagga tattattaga cagataaaca gtatgttcat
     4081 gacttgcaga agaaaataaa aaactaaaat catgttttta ttataccaaa aactcttcta
     4141 cccaatggat aaaagagttt ttcagtatag attataagtt ttcagcaacg ctgttcaaga
     4201 gggtttggat agcagaagca tcgctaccac ctgccatggc catgtctggc ttaccaccac
     4261 cacgacctgc tacgattggc gcaaggactt tgatgaggtt acctgcatga acatcgcttg
     4321 acttgcttgc cacaaggaca ttgaccttgt cgccgatggc cgcaaccaac accaagacat
     4381 cagagtagtc tttctgcttc cagttgtcag cgaaggtacg gagggcacct gcgtctgaaa
     4441 cttggacctg gctagcaatg tagcgaacac catttgcctc tttaacatct ttgaagacat
     4501 ctccagcagc tgctgccgct gctttttctt tcagagctgc attttctttt tgcaggtcac
     4561 gaacttgttg tgcaagactt tcaaccttgt ttggcacttc cttgatctgt ggtgacttga
     4621 tggttaccgc tacttcttta agggcatctt cttggtcacg gtaggcaagg aaggcttcac
     4681 ggcctgttac cgcaacgata cggcgagtac ctgaaccgat accttcttct ttcaaaatct
     4741 tgaagatacc gatttcagcg gtgttgctaa catgggtacc accacagagc tccacagagt
     4801 agtcaccgat agtaacaacg cggacttctt taccgtattt ttcaccgaag agggccatgg
     4861 cacccatttc cttggctgtg tcaatatctg tctcaactgt cacaactgga atggcattcc
     4921 aaatttgctc attg
//
LOCUS       DASFRC010000164         4843 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.164, whole genome shotgun sequence.
ACCESSION   DASFRC010000164 DASFRC010000000
VERSION     DASFRC010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4843)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4843)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4843
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.164"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(26..1981)
                     /locus_tag="U1087_001918"
     CDS             complement(26..1981)
                     /locus_tag="U1087_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM4756358.1"
                     /translation="MKIQDVLRKDVMLLDLQATSKEAVIDEMIASLVDKGYVTDFDVF
                     KTGIMNREAQTTTGLGDGIAMPHAKNAAVKEATVLFAKSNKGVDYASLDGQPTDLFFM
                     IAAPEGANDTHLAALAELSKYLMKPGFADKLRGVSSPEEVISVFDKAEAADKAAEEVV
                     AAPSGDRPFIVAVTACTTGIAHTYMAEEALKKQAAEMGVDIKVETNGASGVGNKLTAE
                     DIKNAAGVIIAADKAVDMPRFNGKPLVSRPVAAGIKQPEELINLILDGKASAYTASEG
                     ATTVESSEKLSLFKAFYKHLMSGVSQMLPFVIGGGILIALAFLFDGALGVPQDSLGSL
                     GSYHEIAAMFMKIGGAAFGFMLPLLAGYIAYSIAEKPGLVAGFVAGAIASSGLAFGKI
                     PYAAGGEETLALAGVSSGFLGALVGGFLAGGVVLVLRKALRNLPKSLQGLNAILLLPL
                     LGTAITGFLMFFVNIPMAAINTGMNNFLAGLEGSSAILLGLVLGGMMAVDMGGPVNKA
                     AYVFGTGTLAATVADGGSVAMAAVMAGGMVPPLAVFVATLLFKDKFTQEERNSGLTNI
                     VMGLSFITEGAIPFGAADPARAIPSFIAGSALAGALVGLSGIQLMAPHGGIFVIALTS
                     NPLLYIAYVLIGAVVSSVLYGALRKAK"
     gene            complement(1978..2889)
                     /gene="pfkB"
                     /locus_tag="U1087_001919"
     CDS             complement(1978..2889)
                     /gene="pfkB"
                     /locus_tag="U1087_001919"
                     /EC_number="2.7.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019323947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase"
                     /protein_id="HEM4756359.1"
                     /translation="MIYTVTLNPAIDYIVRLDRVETGSVNRMESDDKYAGGKGINVSR
                     VLKRLGYPNTATGFLGGFTGQFIKDGLIAEGIDTDFVQVDQDTRINVKIKADQETEIN
                     GLGPIVTDTQLAELEMVLAGLIKEDTVVFAGSAPASLGNEVYNRLIPVAKKAGAQVVC
                     DFEGQTLLDSLAHQPLLVKPNNHELEAIFNVELNGIADIETYAKKILEMGAQNVIISM
                     AGDGALLVTPAATYFAKPIKGTVKNSVGAGDSMVAGFTGEYVRSQDPIEALKWGVACG
                     TATAFSDDLASIEFIKETYEKVEVETL"
     gene            complement(2886..3635)
                     /locus_tag="U1087_001920"
     CDS             complement(2886..3635)
                     /locus_tag="U1087_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEM4756360.1"
                     /translation="MNILKSERKQIILERIHSQQFVRLEELIEVLDTSESTVRRDLDE
                     LENEGKLRRVHGGAEAPGNLQLEESILEKSVKNVQEKREIAERAAQQIVNGDVIFLDA
                     GTTTGVLIDYLQQENLTVVTNSIHHAVRLVERKIKTIIIGGFVKQSTDASVGAVALEQ
                     IRQLNFDKAFLGMNGIDKNYFTTPDIEEATIKRTIIDNAKESYVLADASKIGQFSFVK
                     VAAIEKSNIICQSSESSLLDIIKEKTRVIEV"
     gene            complement(3739..4794)
                     /locus_tag="U1087_001921"
     CDS             complement(3739..4794)
                     /locus_tag="U1087_001921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate aminotransferase family
                     protein"
                     /protein_id="HEM4756361.1"
                     /translation="MKRKVFEHYQPYKIKQKARFDLGNNENRIIDWAFLPQETLENLD
                     VNQLSFYGDNTYSELIEKYAAYLGVNPKQVTVGVGSDHLIHMIVSTFMEKDDTFLTVN
                     PDFFMYETYNHMHGSRFETIDLEAKNDTLVLPVEKLLARAEEVKAKIIMLSNPNNPSS
                     VAHSLEDLEKLAISFKGLLVVDEAYIEFANVESFISRLQHFDNVLVLRTLSKAFGLAG
                     LRVGFAVGSEELIYELDKVIPPFSLSNLTAKMAAVALNYTDKVLETVGVIQNLREEMI
                     LFLQGLDNCQVLPSQASFVTFKAPWAEEFYQQALAQDWNFKYYPTGKLGGHIRLSIGR
                     PEEMDMMKKMIEKLVEA"
BASE COUNT         1383 a         1138 c          916 g         1406 t
ORIGIN      
        1 ttgagaattt acctttcaat taaaattatt tagctttacg aagtgctccg taaaggacac
       61 ttgatacaac cgcaccgatc aaaacatagg cgatgtaaag caatggatta gatgtcaaag
      121 cgataacgaa gataccaccg tgaggagcca tcaattggat gcctgacaaa ccaaccaagg
      181 cacctgcaag ggcagaacca gcgataaagc ttgggattgc acgagctggg tcagcagcac
      241 caaacggaat cgcaccttca gtgatgaatg aaagccccat aacaatgttt gtcaaacctg
      301 agttacgctc ttcttgtgtg aatttgtctt tgaaaagaag ggttgcaacg aatactgcca
      361 acggtggaac cataccacct gccattaccg ctgccatggc aacagaacca ccatctgcaa
      421 cagtcgctgc aagtgtacct gtaccgaaga cataagctgc cttgttgact ggaccaccca
      481 tatcgactgc catcatacca ccgaggacaa ggccgaggag aatagcagag ctaccttcaa
      541 gacctgcaag gaagttattc atgcctgtgt tgatagctgc cattgggatg ttaacgaaga
      601 acatcaagaa accagtgatt gctgttccca aaagtggcaa gagcaagata gcgttcaaac
      661 cttgaagtga ttttggaagg ttgcgcaaag ctttgcgaag aacgagcact acaccaccag
      721 caaggaaacc accaacaagg gcacccaaga aaccagatga tacacctgca agagcaagcg
      781 tttcttcacc accagctgcg taaggaattt taccgaacgc aagaccgcta ctagcaattg
      841 caccagctac gaaacctgca accaaacctg gtttttcagc gattgagtaa gcaatgtaac
      901 ctgctagaag tggcaacatg aagccgaagg ctgctccacc gatcttcatg aacatagctg
      961 cgatttcatg gtatgaacca agactaccaa ggctgtcttg tggcacacct agagctccat
     1021 cgaataggaa ggcaagggca atcaagatac cgccaccgat aacgaatggc aacatttgag
     1081 acacaccact catcaagtgt ttatagaacg ctttgaaaag actgagtttt tctgaagatt
     1141 ccacagtagt tgctccttct gacgctgtgt aggctgatgc tttaccatcc aagataaggt
     1201 taattaattc ttctggttgt ttgattccag ctgcaactgg acgagatacc aaaggtttgc
     1261 cattgaagcg aggcatatca acagccttat ctgctgcgat gataacacct gctgcattct
     1321 taatgtcttc agcggttagt ttgtttccaa cacctgaagc accgttggtt tcaaccttga
     1381 tgtcaacacc catctcagca gcttgtttct taagtgcttc ttctgccatg taagtgtggg
     1441 caatacctgt tgtacatgct gtaacagcaa cgataaatgg acggtcacca cttggtgctg
     1501 caactacttc ttcagcagcc ttatctgctg cttcagcttt gtcaaagact gaaatgactt
     1561 cttctgggct agaaacacca cgaagcttgt cagcaaatcc aggcttcatc aagtatttag
     1621 acaattcagc aagggcagcc aagtgtgtat cgtttgcacc ttctggagct gcaatcatga
     1681 agaacaaatc agttggttga ccatcaagac ttgcgtagtc gacacccttg tttgattttg
     1741 caaagagaac agtcgcttct tttacagccg cattcttagc gtgtggcatt gcgataccgt
     1801 caccaagacc agtagttgtt tgtgcttcac ggttcatgat acctgttttg aatacgtcaa
     1861 aatccgttac ataaccttta tcaaccaaac tagcaatcat ttcatcaata actgcttcct
     1921 tgcttgtcgc ttgcaaatca agcaacatga catcttttct caaaacgtct tgaattttca
     1981 tagtgtttct acctcaactt tttcataagt ttccttaata aattcgatac ttgccaaatc
     2041 atctgaaaag gctgttgccg taccgcaagc aactccccat ttgagggctt cgattgggtc
     2101 ttgtgagcga acgtattcgc cagtgaatcc tgccaccatg gagtctccag ctccgacaga
     2161 gtttttcact gtacccttga ttggtttggc aaagtaagta gctgctggag tgaccaacaa
     2221 agccccatcc cctgccatgg aaatgataac attctgagcg cccatttcta agattttctt
     2281 agcataggtc tcgatgtctg caatgccatt caattcgaca ttgaagattg cttcaagttc
     2341 atggttgttt ggcttgacca atagtggctg gtgtgctagt gagtcaagaa gtgtttgacc
     2401 ttcaaagtca cagaccactt gcgctcctgc ttttttagcc acaggaatca gcctattata
     2461 gacttcattt ccaagactag ctggagcaga cccagcaaag acaacggtgt cttctttgat
     2521 caatcctgct aagaccattt ctaattcggc caactgtgta tctgtcacaa tcggacccaa
     2581 accgttgatt tccgtttctt ggtcagcttt gattttcacg ttaatacgtg tatcttgatc
     2641 aacctgaaca aaatcagtat caattccttc ggcaatcaat ccatctttga tgaactgacc
     2701 tgtgaatccc ccaaggaaac ccgttgctgt attcggatag cccaagcgtt tcaaaacacg
     2761 gctaacgtta attcccttac cgccggcata cttatcgtcg ctctccatac gattgacact
     2821 gcctgtttca actctatcaa gtcgaacgat atagtcaatc gctggattga gcgtaactgt
     2881 ataaatcata cctcgattac cctcgttttc tcttttatga tgtccaacaa actgctttct
     2941 gaagattggc agataatgtt ggatttttcg attgccgcaa ctttaacaaa ggagaattga
     3001 ccaattttag aagcatctgc caaaacatag ctttctttag cattgtctat gatagtgcgt
     3061 ttgatggtcg cttcttcaat atctggcgtt gtaaaatagt ttttatcaat accattcatc
     3121 cccagaaatg ccttatcaaa attgagttgt cgaatttgtt ccaatgccac tgctccaacg
     3181 gaggcatctg ttgattgctt aacaaaacca cctataatga ttgtttttat cttgcgttca
     3241 accagcctca ctgcgtggtg aatagaattg gtaacgactg tcagattttc ctgctgaaga
     3301 taatcaatca gtacaccggt tgttgtacct gcatctaaaa aaattacgtc tccgttaaca
     3361 atttgttgag cagctctttc cgcaatctct cgtttttctt gaacgttttt gacagatttt
     3421 tctagaatag actcttcgag ttgcaaattc cctggcgctt cagcaccgcc gtgtacacga
     3481 cgaagcttac cttcgttttc caactcgtcc aaatccctac gtacagtaga ctcagatgta
     3541 tcaagaactt cgattaattc ctctagccga acaaactgtt gagagtgtat tcgctccaat
     3601 ataatctgtt ttcgttctga tttgagtatg ttcaacacct cctgcaatcg tttacaaaaa
     3661 tcattataca cgattttctg ccattgtcaa tcattttcta tcattttctt tcaaaaaaac
     3721 aaaaaaacta gcagaaatct acgcttccac tagtttctca atcatttttt tcatcatgtc
     3781 catttcttct ggacggccaa tagataggcg gatatgcccc cctaatttac ctgttggata
     3841 atatttgaaa ttccaatcct gtgccaaggc ttgctgataa aattcttctg cccacggtgc
     3901 tttaaacgtt acaaaactag cctgactagg tagaacttga cagttatcta acccttgcaa
     3961 gaataaaatc atttcttctc gcaaattctg aattactccc actgtttcta aaaccttgtc
     4021 tgtataattc aatgcaacgg ctgccatttt tgcagtcaag tttgacaagc tgaatggggg
     4081 aatgaccttg tccaattcat aaattaactc ttcgcttcct accgcaaagc caactcgtaa
     4141 acctgcaagt ccaaaagcct ttgataaggt ccgtaaaact aaaacattgt caaagtgttg
     4201 cagacgactg atgaagcttt cgacatttgc aaattcaatg taagcctcat ctacaacgag
     4261 tagcccttta aaagaaatag ccaatttctc caaatcttct agtgaatgag ctactgaaga
     4321 aggattgtta ggattggaaa gcatgattat ctttgccttc acctcctctg cacgcgccaa
     4381 caatttctct actggcagga cgagcgtatc gttttttgct tccaaatcaa tggtttcaaa
     4441 acggctacca tgcatgtgat tataggtttc atacatgaag aagtctggat tgactgtcaa
     4501 aaaagtatca tccttttcca taaaggtgga aacaatcatg tgaataaggt gatcagagcc
     4561 cacacctacc gtcacttgtt tgggattcac tccaagatag gccgcatatt tctcaatcag
     4621 ttcggagtaa gtgttatcac cataaaaact taattgattg acatccaaat tttccaaggt
     4681 ctcttgtggc aaaaaagccc aatcaatgat acgattttcg ttatttccta aatcaaatct
     4741 tgccttttgt ttgattttat aaggttggta atgttcaaat accttgcgtt tcatcatttc
     4801 tccttctagc aagaaaaaca cagtctaatc aactgtgtct tct
//
LOCUS       DASFRC010000165         4793 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.165, whole genome shotgun sequence.
ACCESSION   DASFRC010000165 DASFRC010000000
VERSION     DASFRC010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4793)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4793)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4793
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.165"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(15..647)
                     /locus_tag="U1087_001922"
     CDS             complement(15..647)
                     /locus_tag="U1087_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4756362.1"
                     /translation="MFSIQSIQKKFGKRSLFSDVTLDLQAGKVYALIGASGSGKTTLL
                     NILAKLESYDAGDILYKGKDLKKLKPHLFFREELGYLFQNFGLLESQTIRENLDLGLI
                     GQKLSKDERKLRQEAALDAVGLSYLDLSQPIYELSGGEAQRVALAKVILKNPPLILAD
                     EPTAALDPKSSQEIMDILLSLKSPDRLIVIATHNPLIWERADLIIKMEDL"
     gene            complement(649..2631)
                     /locus_tag="U1087_001923"
     CDS             complement(649..2631)
                     /locus_tag="U1087_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1430 domain-containing protein"
                     /protein_id="HEM4756363.1"
                     /translation="MKGKFVLVSTIILAVFMIWLGVSQKETMLVHYYPSVTSLSVSED
                     VTYSDVRQRLEEYSQQTDSVIARRVIEPSTSGGRTFSYDNFSQSSLPRGLEEFQASEK
                     VESALLTKYFIFQGKATVEELRSLLVSLGFDEVQIRKPSTIATLLAFLTQGGQFLAVL
                     VFLITYMALVVVANVRQLRTAGIRLIAGDSRWHLFLLSLQENAKEIALTIPFAVLPAV
                     GLAYLIGLDSYSVYYLVAALVGYHFLLGLIALFFAATFTLAIRIYHFLPLLKGKMPLQ
                     GILTIMVMGQMLALLVVSLGMAQTVYYSGIWQEYQAGARQWEKEEDYYSLAWNIAADG
                     HSGLNSPENWYPLLKQALEKDGALFVKSNLNAYLMGSQLEDGTSLDSYHPAGNTLYVS
                     PNYLQIQDVDLSDEALPSLQEGEFQLLLPEKLRPESDIYLHLYQDYINRMVRPANQAS
                     SATIKGKLAYLKDGQKQFIYNHRSSQHVQYLTDPILVVLAPSSLGKESADFWLNEVDS
                     SILFKNRDKLLRELKARNLFQFVNEVRSSSSLFTELLDRIRIETISTSMGAILGIVTS
                     IILFNTMNLLYFEEFKRDIFIKEIAGMDFLGIHKKYLTFQLLSLLLALGASMVVTGHM
                     FISSISFALFMVNALCLLRWQARKDGTWNIRILKGA"
     gene            complement(2651..4635)
                     /locus_tag="U1087_001924"
                     /pseudo
     CDS             complement(2651..4635)
                     /locus_tag="U1087_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774933.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1430 domain-containing protein"
BASE COUNT         1476 a         1087 c          842 g         1388 t
ORIGIN      
        1 aagagtatga atttttacaa gtcttccatt tttatgataa ggtctgctcg ctcccaaatc
       61 aaaggattat gggtcgcaat cacaattagc cgatctgggc tcttcaagga taacaaaata
      121 tccataattt cttgggagct cttaggatct aaggcagccg tcggctcatc tgctaaaatc
      181 aatggaggat ttttcaggat gactttagca agtgctaccc gctgagcttc ccctcctgag
      241 agttcataga taggctgaga caggtccaga taagacagac caactgcatc aagtgccgct
      301 tcctgcctca atttcctttc gtctttggac aatttctgac caatcagtcc caaatccaga
      361 ttttctctga ttgtctgact ttctaaaaga ccaaaattct gaaagagata gcctaattcc
      421 tccctaaaaa agagatgggg cttcaacttt ttcaaatcct tccccttgta gagaatgtca
      481 cctgcatcat aggactccaa cttggctaaa atattcagca aggtcgtttt tccgctacca
      541 ctggcaccta tcaaggcata gacctttcca gcctgcaagt ctagcgttac atcagaaaac
      601 aaactgcgtt tcccaaattt cttttgaatt gattggatag aaaacatact aggctccttt
      661 caaaatacgg atattccaag ttccgtcttt cctcgcctgc cacctcaata aacagagggc
      721 attgaccata aacaaggcaa aactgatact acttatgaac atgtgacctg tcactaccat
      781 gcttgctcca agagccaaca agagggaaag cagttggaac gttaggtatt tcttatggat
      841 tcccaagaaa tccatccctg caatttcttt gataaaaata tcacgtttaa actcttcgaa
      901 gtataataga ttcatggtat taaacaggat aattgatgtc acaatcccta aaatagcacc
      961 catagatgtt gaaatggtct ctatccgaat acggtctaaa agttctgtaa agagggagga
     1021 actacttctc acttcattga caaactgaaa cagatttctt gccttcaatt cgcgcaaaag
     1081 tttatccctg tttttaaata aaatactgct atctacttca ttcagccaaa agtcagcaga
     1141 ttcttttccc agacttgacg gtgccagcac aactaaaata gggtctgtca ggtattgcac
     1201 atgttgacta gaacgatgat tgtagataaa ttgcttctgc ccatctttta aataggcaag
     1261 ttttcccttg atggtagctg agcttgcttg attggcaggt ctaaccatac gattgatata
     1321 gtcttggtaa agatggagat aaatatcgct ttcagggcgc aatttttcag gtaagagaag
     1381 ttgaaattct ccttcttgta gagaaggtaa tgcttcgtcc gacaagtcta catcctgtat
     1441 ctgcaaataa tttggactaa cgtagagggt gttgcctgct ggatggtagc tatcaaggct
     1501 tgtcccatct tccagttggg agcccattaa ataggcattc aaattacttt tgacaaagag
     1561 cgcgccgtct ttctccaaag cttgctttag taaagggtac caattttcag gcgaatttag
     1621 tcctgagtga ccatccgcag caatgttcca agccaaacta tagtagtcct cttctttctc
     1681 ccactgccgg gcacccgctt ggtattcttg ccaaatccct gaataataga cggtttgagc
     1741 catgcccaat gacaccacca gtagagccag catttgcccc ataaccataa tggtcaggat
     1801 tccttgcagg ggcattttcc cttttaacaa gggtaaaaag tgatagattc gaatggccaa
     1861 ggtaaatgta gcagcgaaaa aaagggcaat caaaccaagc aagaaatgat agcctactag
     1921 agctgcgacc agatagtaga cagaatagct atctaatcca atgaggtagg ccagtccaac
     1981 tgctggaaga accgcaaatg ggatagttag agctatctct ttcgcatttt cctgtagaga
     2041 tagtagaaat aaatgccaac gtgaatctcc tgcgatcaaa cggatacctg ctgtgcgcaa
     2101 ttgccttaca ttggcaacca ctaccaaagc catataggta ataagaaaga ccagtacggc
     2161 taagaattga ccaccttgtg tcagaaatgc gagtaaagta gcaatagtcg aaggcttccg
     2221 aatctgaacc tcgtcaaatc caagcgaaac aagaagagac cgaagctcct ctactgtcgc
     2281 tttcccttgg aaaataaaat atttggttaa aagcgcagac tccacctttt ctgatgcctg
     2341 aaattcctcc agtcctcttg gtaaggaaga ctgactaaaa ttatcataag aaaaggtacg
     2401 tccacctgat gtacttggct caatcacccg cctggcaatc acactatccg tctgttgaga
     2461 atattcctct aatcgttgtc ttacatctga gtaagtcacg tcctcagata ccgacaagct
     2521 ggtcacagaa ggataataat gaactagcat agtctccttt tggctgacgc ccaaccaaat
     2581 cataaagacg gctagaatga tcgtcgatac aagtacaaat tttcctttca ttctaacttc
     2641 acctcattaa ctatctgcca tttaatacac tcaactggat tttttctgcc tttttcgctt
     2701 gtttgttcag taacatccaa ctatttatca acagagccac aactactcct aggctaacaa
     2761 taactgactt tgtcataaac attgccaaac ccatcccaac aagagcggag ccgacttgtt
     2821 ctcctagata agaaccatgc aattcgataa aacgcatccc tgctatccgc ttgatggcta
     2881 tttctctttt gaaggtctca aagtatagaa gattcatcgt attgaacaat agtatggaag
     2941 tgaatattcc aaggattgtc ggagataggg tcataagaat ttcaagttga acattttttc
     3001 tcagggtgtt gtactgttgc ctgctagata acaagctacc tattgtgttt cgtaaattgt
     3061 atttctccaa cagctgttcc agcatctctt tatctttgaa aaatacaaaa tctggtaagg
     3121 cattttccca aaaataggac gtttcttcaa aactttcagg tgatagaaca acaatcaacg
     3181 gagcctgtaa aaattgctca taatttatcg gagtatgatt gtaaatgaac catcgcttct
     3241 cgtctgaaat gtaataaacg tttgaataca aacttatgga tttttctcca tccgcaagca
     3301 attttcctac catgtcctca aaatacgctt ggtaaacact cgcatcattt tgcaaactct
     3361 ttggtaataa taatgcaatt tctcctttac ctaattgctt tatctcttcc agctgattga
     3421 aatcgtacag gccaccttct gattgtatat aattcggcgt cacatacagc accctttcta
     3481 gaggaatttc cttgctggat tcaatgatgg tatgttcttt tattgtgtta tgccgtaaat
     3541 agtgctggac taacagtaca ttatttttcg catatgattc caaaattaca tgagaccaag
     3601 ccattctttg ttgctgggcc atcgcttcat cagctatgaa tgcttcacga ttcaaagaca
     3661 gactaaaaca tcttgtcttt cttgccaagc cttttctcct atcgttagtg tatggagaac
     3721 tccaacatat gtcaacgttc gactaacacc aatagagatg atacaaaccg ctaaacactg
     3781 acctactagt aaaatagcaa aaatcgcctt gagaggtaag gcccccttaa ttagcttttg
     3841 taactgagaa atgtttaatg caatcatgaa tccaacactt gtcgataaag ataggaaaaa
     3901 aagcaaacaa gcataaaagg caataccgat tgctacaaaa cgataatata ccattggcca
     3961 acccaaaatt aaaatagcaa tcagtccgaa aacaagcgct cctcctgtag ccaatgctat
     4021 atctcttcca tccactctta aaaaacgact agcaatctgc caactcctca cccctgaaag
     4081 tatctctatc cctgctgacc gcaagtagac aatctgccca actactgtca atgcaagatt
     4141 ggtgagtata aagataataa gccctaagcc cggagctcct ctaccaagaa atagacttaa
     4201 actgtttaat agggtcggtc tataaatata gctatccacc aatcccagtg actgtaagac
     4261 gttttctaac gctttgatgt ccagattccc ttttacaaca tagtaatttt cagctaagtt
     4321 ggcctgacta gctactaacc tatccgcttt gaccaagccc tgtggaagct cccccttccc
     4381 aaaaacatca taactggtag tagttcgccc actatcatct gtttctgtta ttgtcttagc
     4441 aattagacta ttttcctttt cagctaaatt tgtcagggca tccgacactt cttcataggt
     4501 cacttcttcc cctcgactta atatggaaac cgatggatag taatgataaa ttaaagaatc
     4561 gagttgcaga ctcactaacc acatacagaa gagacagacg ctaaaagtag ataaataggt
     4621 aaatactttt ttcataacga accccatttg cacaaaaagg aggtggactc cacaacctcc
     4681 ctatcattag aacccgtaac caaaatcaac atgttttcaa acgttcgttg atatagcttt
     4741 ttattttatt ttaacatatt aacagtcgat tttcaatcta ttttaattat ttt
//
LOCUS       DASFRC010000166         4789 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.166, whole genome shotgun sequence.
ACCESSION   DASFRC010000166 DASFRC010000000
VERSION     DASFRC010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4789)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4789)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4789
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.166"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(39..>4789)
                     /locus_tag="U1087_001925"
     CDS             complement(39..>4789)
                     /locus_tag="U1087_001925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEM4756364.1"
                     /translation="KETFSLRKYKIGTVSVLLGAVFLFAGAPSVAADELTSLVETKVE
                     ATVPEAIVSESASESPVVEELVDTSVEATPTDVTTTDNIEETLGSEALENITNTEVEA
                     TQPAVETPAISEKKVEEEEKLSIADETTAISNQEEAKPQNIDSNTIITVPKVWDSGYK
                     GEGTVVAIIDSGLDVDHDVLHISDLSTAKYKSEKEIEAAKEAAGISYGEWFNDKVVFG
                     YNYVDVNTVLKEEDKRSHGMHVTSIATGNPTQPVAGQLMYGVAPEAQVMFMRVFSDLK
                     ATTGAALYVKAIEDAVKLGADSINLSLGGANGSVVNMNENVTAAIEAARRAGVSVVIA
                     AGNDGTFGSGHSNPSADYPDYGLVGAPSTARDAISVASYNNTTVGSKVINIIGLENNA
                     DLNYGKSSFDNPEKSPVPFEIGKEYEYVYAGIGQASDFDGLDLTGKLALIKRGTITFS
                     EKIANATAAGAVGVVIFNSRPGEANVSMQLDDTAIAIPSVFIPLEFGEALATNSYKIA
                     FNNETDIRPNPEAGLLSDFSSWGLSADGELKPDLAAPGGAIYAAINDNDYANMQGTSM
                     ASPHVAGAAVLVKQYLQATYPTKSPQEIEALVKHLLMSTAKAHVNKETTAYTSPRQQG
                     SGIIDTAAAISTGLYLTGEDGYGSITLGNVEDTFSFTVTLHNITNEDKTLNYSTQLTT
                     DTVQNGLITLAPRLLAEIPGGKVTVKANSSTTVTINVDASSFAEELTGLMKNGYYLEG
                     FVRFTDVADGGDIVSIPYVGFRGEFQNLAVLEEPIYNLIADGKGGFYFEPVTAQPDTV
                     DISHHYTGLVTGSTELIYSTDKRSDFAIKTLGTFKNEAGYFVLELDESGKPHLAISPN
                     GDDNQDSLAFKGVFLRNYTDLVASVYAADDTERTNPLWESQPQSGNKNFYSGDPKNPK
                     SSIIYPTEWNGTDSEGNALADGKYQYVLTYSSEVPGAAVQTMIFDVIIDRESPVITTA
                     TYDETNFTFNPRPAIEKGESGLYREQVFYLVADASGVTTIPSLLENGDVTVSDNKVFV
                     AQNDDGSFTLPLDLADISKFYYTVEDYAGNISYEKVENLISIGNEKGLVTVNILDKDT
                     NSPVPILFSYSVTDETGKIVAELPRYAGDTSVLKLPFGTYTFDLFLYDTEWSSLAGET
                     KAVVTISEENSTAEVNFYVTLKDKANLLVDIDALLPSGSTIQLVTADGQTIQLPNAKY
                     SKTDYGKFVPVGTYTILPTLPEGYEFLEELDVAVLANQSNVKKLTLINKVALKELIAE
                     LAGLEETARYYNASPELQTAYAKALEDANAIYANKHNQAQVDSALASLVAAREQLNGQ
                     ATDKEKLIAEVSNYTPTQANFIYYNAENTKQIAYDTAIRSAQLVLNQENVTQAVVNQA
                     LADLLAAKANLDGQKTDISALRSAVSVSSVLKATDAKYLNASENVKQAYDQAVEAAKA
                     ILADESASQASVDQALAVLTSAQAELDGIATSTNDAKEPANTSTDKKDEGTVTPPPID
                     SEKVDVQAPPVKDTGNSGHVPIGQKPNPQPTLPRPVTLQASLSSPNQEKQVTQLPNTG
                     ENDTRYYLVLGVIIGLGTLLVSKRRHKEEV"
BASE COUNT         1262 a         1017 c          974 g         1536 t
ORIGIN      
        1 ggataatttt gattttcgaa gagtatgact atattttctt agacttcttc tttgtgacgt
       61 cgtttgctta ccaacagagt tcctagccca ataatgacac caagaacaag atagtatctc
      121 gtatcatttt ctccagtatt tggtagttga gtcacctgtt tttcttgatt agggctagat
      181 agactagctt gcaaagtgac tggacgaggt aaagttggtt gggggtttgg cttctgccct
      241 atcggtacat gccctgaatt cccagtatct tttacaggag gtgcttgtac atcaactttt
      301 tctgagtcta taggtggagg cgttacagtg ccttcatctt ttttgtcagt ggaagtattt
      361 gctggctctt tggcatcatt tgttgaagta gcaataccat ccagttctgc ctgagcgctt
      421 gtcagaacgg ctagagcttg atcgacactt gcttggcttg cagattcatc agctagaatc
      481 gctttcgctg cttcaaccgc ctggtcataa gcttgtttca cgttctcaga tgcattgaga
      541 tacttagcat ctgtcgcttt taatacggaa gaaacggata ctgcgctacg aagggctgaa
      601 atatcagtct tttgaccatc taagttggct ttcgctgcta acaagtcagc caacgcttgg
      661 ttgacaactg cctgtgttac attctcttgg ttcaatacaa gttgtgctga acgaatagct
      721 gtatcatagg caatttgttt ggtattttca gcattgtaat aaataaagtt tgcctgagtc
      781 ggtgtgtagt ttgatacttc agcaattagt ttttccttat cagtagcctg accgtttagc
      841 tgttctctcg ccgccacaag actggcaagt gctgaatcta cttgtgcctg attgtgttta
      901 ttggcatata ttgcattggc atcttctaat gctttagcat aggcagtttg aagttctgga
      961 ctagcattgt aataacgcgc tgtttcttca agtcctgcaa gttcagcgat cagttctttc
     1021 agagcaactt tattaatcaa ggttaatttc ttaacatttg actggtttgc aagtactgct
     1081 acgtctaatt cttccaaaaa ttcatagcct tctgggaggg ttggaaggat agtgtaggta
     1141 ccaactggta caaatttacc ataatcggtc ttagaatatt tagcatttgg tagctgaata
     1201 gtctggccat cagcagttac cagttggatg gttgagccag aaggtagtaa tgcatcaata
     1261 tctaccagca agttggcctt atctttcaaa gtcacataga aattcacctc ggcagtgcta
     1321 ttttcttccg aaattgtcac aactgctttt gtttcaccag ctaggcttga ccattctgta
     1381 tcatataaga ataaatcaaa ggtgtaagta ccaaatggta gcttaagaac gctagtatcg
     1441 ccggcatatc gtggtaattc tgcaacaatc ttgcctgttt catctgtgac tgagtaagag
     1501 aaaagtattg gtacaggact atttgtatct ttatcaagaa tattgacagt taccaaccct
     1561 ttttcattgc cgatactgat cagattctct actttttcat agctgatgtt accagcataa
     1621 tcctctactg tgtagtagaa ttttgaaata tctgcaagat caagaggcaa tgtaaaggag
     1681 ccatcgtcgt tttgtgccac aaataccttg ttatcagaaa cggttacatc accattttct
     1741 aataaggaag gaatagttgt cacaccgctt gcatctgcta caaggtagaa tacttgctcg
     1801 cgatatagac cggattctcc tttttcaatg gctggacgag ggttaaatgt aaagtttgtt
     1861 tcatcatagg tagctgtggt gataactggt gattctctat cgatgataac gtcgaaaatc
     1921 atagtttgta ctgctgcacc tggaacttca gatgagtagg tcaaaacgta ttgatactta
     1981 ccatctgcta aagcatttcc ctcgctgtct gtcccattcc attcagtagg gtaaataatg
     2041 cttgattttg gatttttagg atcaccacta tagaagttct tattgcctga ctgtggttga
     2101 ctttcccaaa gtggatttgt tcgctcagta tcatctgcag catagacgct tgcgactaaa
     2161 tccgtataat ttctcaagaa gacacctttg aaagcgagcg aatcttggtt gtcatcccca
     2221 tttggcgaga tagctaaatg aggcttacca gactcatcaa gctctaaaac aaagtatcct
     2281 gcttcatttt taaatgtacc aagtgtcttg atcgcaaagt cagatcgttt gtctgtagaa
     2341 tagattaact ccgtacttcc tgtaacaaga cctgtgtagt gatggctgat gtcaacagta
     2401 tctggttgtg ctgtaacagg ttcaaagtag aagcccccct tgccatcggc aataagattg
     2461 taaatcggct cttctagaac ggctagattt tggaattccc cacggaaacc aacgtatgga
     2521 atgctgacaa tatcaccacc atcggctaca tctgtaaatc gaacaaaacc ttcaagatag
     2581 taaccgtttt tcattaaacc tgtcaattct tctgcaaagc ttgatgcatc gacattaatt
     2641 gtaacagttg tacttgaatt ggctttcaca gtcaccttac cgccaggaat ctctgctaat
     2701 agacgcggag ccaaggtgat caatccgttt tggacagtat ccgttgttaa ttgcgttgag
     2761 tagtttaaag tcttatcttc gtttgtaatg ttatgaagtg tgaccgtaaa gctgaatgta
     2821 tcctcaacat ttcccaaggt aatgctgcca taaccgtctt cgccagtcaa atataaacct
     2881 gtagaaatag ctgccgcagt atcgatgata cctgaacctt gttggcgtgg ggaagtgtag
     2941 gctgttgttt ctttgttcac atgtgcttta gcagtagaca taagcaagtg ttttactaag
     3001 gcttcgattt cttgagggga cttagtaggg taagttgcct gtaaatattg ttttactagt
     3061 acggctgctc ctgctacgtg tggtgaagcc atacttgttc cctgcatgtt ggcatagtca
     3121 ttatcattga tggctgcata aatagcacca cctggagcag ctaagtctgg ttttagctcg
     3181 ccatccgccg acagacccca acttgaaaaa tctgaaagaa gacctgcttc tgggttaggg
     3241 cgaatatctg tttcgttatt gaacgcaatc ttatatgagt tagttgccaa agcttcacca
     3301 aattccaatg gaatgaagac agatggaatt gcaatagctg tatcatcaag ttgcatgctt
     3361 acattggctt cacctggacg gctattgaaa atgaccaccc ctactgcacc tgcagctgtt
     3421 gcattggcta ttttttctga gaaggtaatc gttccacgtt tgatgagtgc aagttttcca
     3481 gtcaaatcta gaccatcaaa atccgaagct tgaccgattc ccgcatagac atattcatat
     3541 tctttcccga tttcaaatgg tacgggactt ttctctggat tatcaaacga actcttaccg
     3601 taattcaagt cagcattgtt ttctaagcca atgatattaa ttactttact accaaccgtt
     3661 gtgttattgt aagaagcgac agaaattgca tcgcgagctg ttgaaggtgc accgaccaag
     3721 ccataatctg gataatcggc tgacggatta gaatgacctg aaccaaatgt tccatcatta
     3781 ccagctgcaa taacaacaga aacccctgca cgacgagcag cctcgattgc tgcagtcaca
     3841 ttttcattca tgttaacaac agagccgtta gctcctccca ggctgaggtt gatgctatct
     3901 gcacctaatt ttacagcatc ttcaatcgcc tttacgtaca atgctgcgcc tgttgtagct
     3961 ttgaggtctg agaatacacg cataaacatg acttgcgctt caggagctac accatacatt
     4021 aattgtccag cgactggttg tgtcggattt cctgtggcaa tactcgttac gtgcataccg
     4081 tgtgagcgtt tgtcttcttc tttcaagaca gtattcacat caacatagtt ataaccaaat
     4141 acaaccttat cgttaaacca ttcaccgtag gaaatccctg ctgcttcttt agctgcttct
     4201 atctcttttt ctgatttata ttttgcagtt gagagatctg aaatatgcaa tacatcgtga
     4261 tcaacgtcaa gaccggaatc tatgattgca actactgttc cttcgccctt gtaaccacta
     4321 tcccaaactt taggtactgt aatgatcgta ttactatcaa tgttttgtgg tttcgcttct
     4381 tcctgattag aaatagcagt agtctcatct gctatggaaa gcttctcttc ttcttctact
     4441 tttttctctg aaatagctgg agtttctaca gctggttgag tcgcttctac ttctgtattt
     4501 gtgatgtttt caagagcttc tgagccaagt gtttcctcta tattatccgt agtggttaca
     4561 tcagttgggg tagcctccac agaagtgtca actaactcct cgacaacggg actttctgag
     4621 gctgattcgc tgacgattgc ctcaggaaca gttgcttcca ccttagtctc tacaaggctt
     4681 gtcaattcat ctgcagctac cgatggtgca cctgcaaaca aaaaaactgc acccaaaaga
     4741 acagacacag ttccaatttt atacttccga agtgagaaag tttctttct
//
LOCUS       DASFRC010000167         4787 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.167, whole genome shotgun sequence.
ACCESSION   DASFRC010000167 DASFRC010000000
VERSION     DASFRC010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4787)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4787)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4787
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.167"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(81..695)
                     /locus_tag="U1087_001926"
     CDS             complement(81..695)
                     /locus_tag="U1087_001926"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEM4756365.1"
                     /translation="MSVIERLTKAAHLIDMDDIIREGHPTLRQVAEEVAFPLSDQEII
                     LGEKMMQFLKHSQDPVMAEKMKLRGGVGLAAPQIDVSKRIIAVLVPNPEDEEGNPPAQ
                     AYSLQEVMYNPKIVAHSVQEAAMEGGEGCLSVDREVQGYVVRHARVTVDYMDKNGETH
                     RIKLKGFNAIVVQHEIDHLNGVMFYDRIDPEHPFAVKEGMLVIE"
     gene            825..1988
                     /locus_tag="U1087_001927"
     CDS             825..1988
                     /locus_tag="U1087_001927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM4756366.1"
                     /translation="MKRILEKASLLALSTMLVSTFAVSPAIPQMIEHFAQQGIAAAQV
                     ENLITVTSFAIMVTLLANGLVVRFLSERNIIIAGLLLMAIGGALPMFLTAYPLILLAR
                     ILLGLGIGLINARAINIIGNFFTGQERVQMMGLRGSAEVLGSAGLTLLVGWLTQFGWQ
                     PAFLVYLFALVILALFLLFVPKEELLARMEVKVEENAPKVKLDKTMWMMGIYLAFLAF
                     FVINVNAFLTIRIPQIVLAKGIGTAQQASLILSLMQVMGIVAGTVFSSLVGRLKGWLL
                     AVSYVVFGLAVVGIAFADNLWVLGLGGMVSGFFYSIILTIVFSQVTDRAPKALLNAVM
                     TIVLMGCNIGGATSAILPTYLEKLNPTPTGAFGIYAIGCALISAGLIYKQLKK"
     gene            2025..2195
                     /locus_tag="U1087_001928"
                     /pseudo
     CDS             2025..2195
                     /locus_tag="U1087_001928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028520.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
     gene            2202..2651
                     /locus_tag="U1087_001929"
     CDS             2202..2651
                     /locus_tag="U1087_001929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM4756367.1"
                     /translation="MDYFYIMPLPQDLALEIANQWRYQPPLDAYTISANPETYAEMIS
                     PEARGDRFFAVIRNAALMGYFCIDQDGETVDIRLGMKPSLTGQGNGRAFYQAIEDYLV
                     EHVQPASIKLTVASSHQVAQKLFHALGFTEIEKQSEYIKMEKKLVCD"
     gene            2642..3370
                     /locus_tag="U1087_001930"
     CDS             2642..3370
                     /locus_tag="U1087_001930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004185339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEM4756368.1"
                     /translation="MRLDKFLVDCGVGSRTEVKKLLKNKQVTVNGQVETSPKQQIDEK
                     KDQIAVAGQVLSHETFVYYLLNKPKGVISATEDDRHRTVLDLLDNTARQKEVFPVGRL
                     DIDTHGLLLLTNNGQLAHAMLSPKKHVDKLYRAQVDGIMTQEDAERFAAGIELKDFTC
                     QPAQLTILSTDEAKQTSLVDITIREGKFHQVKRMVQACGKTVTDLQRLTMGPLELDPV
                     LALGEYRRLTAAELKQLEVFGVEL"
     gene            3374..3811
                     /locus_tag="U1087_001931"
                     /pseudo
     CDS             3374..3811
                     /locus_tag="U1087_001931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638669.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="purine/pyrimidine permease"
     gene            4233..4742
                     /locus_tag="U1087_001932"
     CDS             4233..4742
                     /locus_tag="U1087_001932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756369.1"
                     /translation="MLKYIRAFPLVIVAGAVVYFTIFICIDNGDWTYVVTRALGLKEE
                     HANNVSLIVIGAQSLFLTSDWFYKRIRAFLNRRLEKAKGLNRQIYLGYKAGIEFLMAL
                     PKRTILFTFYLLLVVAESVGLIEKAKDYAAVIIFIIAVDRVTKIWPEEKRRMIEFSQK
                     IKKRIKSVG"
BASE COUNT         1229 a          962 c         1126 g         1470 t
ORIGIN      
        1 attgagatcg atccgaaagg gtcgtttttt cgtactcaca taaaaaactg gctgaaaatt
       61 tttcagtcag tttcttatgt ttattcaatt accaacatgc cttctttaac ggcaaatggg
      121 tgttctgggt caatgcggtc gtagaacatg acaccgttga ggtggtcgat ttcgtgttgg
      181 accacgatgg cattaaagcc tttgagtttg atacggtgtg tttctccatt tttgtccatg
      241 taatcaacag tcacgcgcgc gtggcggact acatagcctt ggacttcgcg gtcaacggat
      301 aggcagccct cgcccccttc catagcagct tcttggacag aatgtgccac gattttaggg
      361 ttgtacatga cttcttgtag agagtaggct tgggcaggtg ggttgccttc ttcatcttct
      421 ggatttggga ctaagacagc aatgatgcgt ttggaaacgt caatctgagg tgctgctaga
      481 ccaactccgc cacggagttt cattttttca gccatgactg gatcctgcga atgtttgagg
      541 aattgcatca ttttttcgcc caaaataatt tcctgatcag atagaggaaa tgcaacttct
      601 tcggcaactt ggcgtagggt tggatgccct tcacggatga tgtcatccat gtcaatcaaa
      661 tgggcagctt ttgtcaatcg ttcaataaca gacatgattc tctcctttga atatagttaa
      721 gataagtata gcatgaaatg ggagagaata aaagtcagac ttttctatcc attcgctttc
      781 aaatctgtta tactagtaaa agacgaacgt tgaaagggag aaaaatgaaa agaattttag
      841 aaaaagccag tttgctggcc ctatccacca tgctggtttc gacatttgct gtctcgccag
      901 ctattccaca gatgattgag cattttgccc agcagggaat tgcagcggcc caggtggaaa
      961 acttgattac ggtgacctct tttgctatta tggttactct attggcaaat ggtctagttg
     1021 tccgtttttt gtctgaacga aacattatta ttgcaggtct tttgcttatg gccatcggtg
     1081 gagcattgcc catgtttcta actgcttatc ctctgatttt attggctcgt atcttgcttg
     1141 gtttggggat tggcctaatt aatgcgcgtg ctattaatat catcggtaat tttttcaccg
     1201 gtcaggagcg ggtgcagatg atgggcttgc gtggttcagc agaggttttg ggaagcgcag
     1261 ggcttaccct ccttgtcggt tggttgaccc agtttggttg gcaacctgcc ttcttggtct
     1321 acctttttgc cttggtcatc ttggctctct tccttctctt tgttcccaag gaggaattgc
     1381 tggctcgcat ggaggtaaag gttgaggaga acgcgcccaa ggtcaagctg gataagacta
     1441 tgtggatgat gggcatttat ctggcattct tagctttctt tgttatcaat gtcaatgcct
     1501 tcctgaccat tcgcattcct cagattgttt tagccaaggg catcggtact gctcagcaag
     1561 ccagtctcat tctcagtctt atgcaggtca tggggattgt ggcagggacg gtctttagta
     1621 gcttggttgg tcgtttgaag ggttggcttt tagctgtttc ctacgtggta tttggactcg
     1681 cggttgtcgg cattgccttt gcggataatc tctgggtgct gggactcggt ggcatggtgt
     1741 caggattttt ctacagcatc attctaacca ttgtctttag tcaggtaaca gaccgtgcac
     1801 ccaaggcctt gctcaatgcg gtcatgacaa tcgtccttat gggctgcaat atcggcggtg
     1861 cgacatctgc tatcttaccg acttatctgg aaaaactcaa cccaacccca acaggtgcct
     1921 ttggtattta cgccatcggc tgtgccttga taagcgcagg cttgatttat aaacaactga
     1981 agaagtagga gcggatttcc gctccttttt ggtataatat tcttatgtta gaaaataacc
     2041 gcttaaatga attaatacta cgttttcccg aggatgttca gttgattttt aaggacatga
     2101 ttccctccta tcagttgggc tatgtggatt atgtttatca gacagatagt tacgccaccc
     2161 aaaaccgtcg gattaaaaat ttggcaaaaa atttccgaag aatggattac ttttacatca
     2221 tgcccctgcc ccaggatctg gcattggaaa ttgctaacca atggcgctat caaccacctt
     2281 tggatgccta tacgattagt gcaaaccccg agacttatgc tgagatgatc tcaccagagg
     2341 cgcgtgggga ccgctttttt gcagtcatcc gcaatgccgc cctcatgggc tatttctgta
     2401 ttgaccaaga tggcgagacc gttgacattc gtttgggtat gaaaccttct ttgacaggtc
     2461 agggaaatgg cagagctttc tatcaggcta ttgaagacta tttagtagag catgttcagc
     2521 cagctagtat caaactgaca gttgctagct ctcatcaagt tgctcaaaaa ctctttcatg
     2581 ctcttggttt tacagaaata gaaaagcaat cagaatatat caaaatggaa aagaaactcg
     2641 tatgcgatta gataaatttt tagtggattg cggtgttggc agtcggacag aagtcaagaa
     2701 actcctgaaa aacaagcaag tcacagtcaa cggccaagta gaaacctccc caaaacagca
     2761 gattgatgaa aaaaaagacc agattgcagt agcaggtcag gtccttagtc atgaaacctt
     2821 tgtttactat ctgttaaaca agcccaaggg tgtgatttca gccacggagg atgaccgtca
     2881 tcggactgtc ttggacctgc tagataatac agctcgccag aaggaagttt ttcctgttgg
     2941 acgcttggac atcgataccc atggcttgct cctcttgacc aacaacggtc agctggctca
     3001 tgccatgctt tctccgaaaa aacatgttga taaactctac cgtgcacagg tggacgggat
     3061 catgacccaa gaggatgccg aacgatttgc ggcaggaatt gagctgaaag actttacctg
     3121 tcaaccagcc cagttgacca tcctctctac agatgaagct aagcagacct cgctcgttga
     3181 catcaccatc cgagaaggga aatttcacca ggtcaaacgc atggtgcagg cctgtggaaa
     3241 gacggtgaca gacttgcaac gattgaccat ggggccactt gagttagatc cagtgctagc
     3301 tcttggagaa taccgcaggt tgactgctgc cgagttaaag caattagaag tctttggtgt
     3361 ggaattatag ataattggtt ccttgattgc cggtgttttt ggtgctggtc caaatacagc
     3421 cttctcacaa aacgttggcc tcattacttt gacaaaagtt gctagtcgtc atgtcatgat
     3481 tttagcaggt attatcttaa ccctacttgg tgtctttcca aaattatctg ccttgatttc
     3541 catcatgcct cagcctgttc ttggtggtgt tgggattatc atgttcggtt tggttgctgc
     3601 ccaagggatt aagactcttg caactgtaaa aattggtgac cgtgagctct tgattatttc
     3661 cattgccttt gcgcttggga ttggagtgac tgttcgtcca gaattattga gtcatcttcc
     3721 atcagctctt caaatggtct tctcatcagg tatttcaaca gggaccctgg ctgccttggt
     3781 gttaaatctg gtgttaaaag aggaaaaata agagttattt tattagtttg cttagatgaa
     3841 aagagaagaa gatccatctg tggtcttctt ctttttgggg taagtaaaaa atgctaaggg
     3901 tgtacagttg tcgtatctga aattctagcc cctacttgac cgtacttggt ataacatatt
     3961 acaatatata taagaacctg tgttcacagt tcatcgcttt cattggagtg tttgatggtg
     4021 gagataagga aaggagattc ctgaccaatt aggtggtagg tgaaaacagc cacaggagct
     4081 ttttactcgt cgaagcaata aagtgaaact aaatggtgat agagtcaagt attccttcaa
     4141 aaaattgcct tgatgagcaa aaacgatttc ttgcataaga acactttgtt tatgaatata
     4201 ggttctaaga tttgtccaag agaggttatt atatgttgaa atatatccgt gcctttcccc
     4261 ttgttatagt agcgggagcg gttgtttact ttactatttt tatctgtatt gataatggtg
     4321 attggaccta cgttgtgact agagcgctag ggcttaagga agaacatgcc aataatgttt
     4381 ctttgattgt aattggtgcc caatcacttt ttctaacttc ggattggttt tacaagcgga
     4441 ttcgtgcctt tctcaatcgt cgtttggaaa aggccaaagg gcttaatcga cagatttatc
     4501 tgggctataa ggcagggatt gagtttttga tggcgttacc caaacgaact attttattca
     4561 cattctatct acttttagta gttgctgaaa gtgttggtct gattgaaaaa gccaaggact
     4621 atgctgcggt aatcatcttc ataattgctg ttgaccgcgt gaccaaaatc tggccggagg
     4681 aaaagcggcg aatgattgag tttagccaga agattaagaa acggattaag agtgtgggat
     4741 aagtcaagat taaatatttt aagaagacag ctatgtcttc ttttttt
//
LOCUS       DASFRC010000168         4774 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.168, whole genome shotgun sequence.
ACCESSION   DASFRC010000168 DASFRC010000000
VERSION     DASFRC010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4774)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4774)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4774
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.168"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(26..1024)
                     /locus_tag="U1087_001933"
     CDS             complement(26..1024)
                     /locus_tag="U1087_001933"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEM4756370.1"
                     /translation="MQFALMSGLVAFLATVLLIPRFITFYQAKRIEGQQMHEDVKQHQ
                     FKAGTPTMGGTVFLVVAILVSLLFATAFQLLTGGVLAILFILALYGVVGFLDDFLKIF
                     RKINEGLNPKQKLALQILGGIVFYFVHVRGAGGGELNVFGHMVHLGVLYFPFVLFWLV
                     GFSNAVNLTDGIDGLASISVVISLLAYSVIAFNEQKFDILLVCVTMIGGLLGFFVYNR
                     KPAKIFMGDVGSLALGGMLATISIALRQEWTLLLIGLVYVIETSSVMLQVSYFKYTKK
                     RFGEGRRIFRMTPFHHHLELGGLTGKAEKWSEWKVDFFLWSVGLIMSLITLAILYL"
     gene            complement(1026..3275)
                     /locus_tag="U1087_001934"
     CDS             complement(1026..3275)
                     /locus_tag="U1087_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HEM4756371.1"
                     /translation="MPRRNNKLLRYVLKKRYIPSKNRRRVGQSLLLLTVFVFFLFLIN
                     FAYIIGTDSKFGVDLSERADAVHQREVTVQAKRGTIYDRTGIPIAEDSTTYTVYSIID
                     TEYVSELKKVLYVQSSQFSKVAEIFKKHLGMETDYVMEQLNQPELKQVYFGTLGKNIS
                     YSTMSSIQEEMKAAGIEGIAFDASPGRMYSNGNFASIFVGLANPVENKDGSYSLQGVS
                     GLEYYLNDILAGQDGKVIYEKDSQGRVLPGTEKVETETVNGQDVYTTISADLQRSLET
                     NMNTFFDNAKGRYANATLVSAKTGEILATTQRPSYDSDTKEGLGQEGLLERSLLYQEA
                     FEPGSTMKVLTVASAIDNGTFDPNAYYTNNEYVIADAKINDWTLNAGYSAVTLNYAQG
                     FSLSSNVGMTLLQQQMGDEKWLNYLTKFRFGYPTRFGMGDEAPGMVPEDNIVSIAMST
                     FGQGISANQAQMLRSFTSIANNGIMLEPKFISALYNPNTDTARVSSKEEVGNPVSEQA
                     ADDTLRYMINVGTDPVYGTLYSHDLQGPAIQVDGYDIAVKSGSAEIASEDGQGYIKGA
                     YTNSVVAMIPAEDPEFIMYVTIRQPEVLNVLSWRDIVSPTLKEAMLLKDNLNLDSPAP
                     ALTRVANETEYQLPDRIGKAPGESAEELRRQLVQPVILGNGAEIKKVSVEKGSNVIAN
                     QQVLLLTNKFEEMPDLYAITKENMDIFAEWTGIEVTYKGTGSKVVDQSVEVGTALNKT
                     EKITITLGD"
     gene            complement(3275..3598)
                     /gene="ftsL"
                     /locus_tag="U1087_001935"
     CDS             complement(3275..3598)
                     /gene="ftsL"
                     /locus_tag="U1087_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HEM4756372.1"
                     /translation="MLQEKRREATMRVIGDKIRTFTRVEKAFYSSIVLSGLALAIGII
                     FMQTRLLQLQSGMAKVNQDISQKQIEINDAKQAVNELTRSARLMEIAEKAGLTFNNDN
                     IGVAE"
     gene            complement(3609..4559)
                     /gene="rsmH"
                     /locus_tag="U1087_001936"
     CDS             complement(3609..4559)
                     /gene="rsmH"
                     /locus_tag="U1087_001936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016466808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HEM4756373.1"
                     /translation="MSKEFNHTTVLLHETVDMLDIKPNGIYVDATLGGAGHSEYLLSQ
                     LTDGGHLYAFDQDQTAIDYAHIRLASYIEKGQVTFIRDNFRNLKTRLAELGVTEIDGI
                     CYDLGVSSPQLDERQRGFSYKQDAPLDMRMNREGHLTAYDVVNTYDYHDLVRIFFKYG
                     EDKFSKQIARKIEQARAVKPIETTTELAELIKSAKPAKELKKKGHPAKQIFQAIRIEV
                     NDELGAADESIQQAIDLLALDGRISVITFHSLEDRLTKQLFKEASTIDVPKGLPFIPD
                     DLKAPLELVNRKPILPSQEELEANNRAHSAKLRVAKKVHK"
BASE COUNT         1367 a         1096 c          911 g         1400 t
ORIGIN      
        1 cagcatttct gctgtttctg acattttata gataaagaat agctagggta atcaagctca
       61 tgatgagacc gactgaccag aggaaaaaat caactttcca ctcgctccat ttttcagctt
      121 ttccggtcaa acctccaagc tccaaatggt gatgaaaagg agtcatacgg aagatacgac
      181 gaccttctcc aaagcgtttt ttggtgtatt taaaatatga aacttgcaac ataacagagg
      241 acgtttcaat gacatagacc aggccgataa ggaggagggt ccattcctga cggagggcaa
      301 ttgaaatagt tgccaacata ccaccgagag ccaagcttcc cacatccccc atgaaaatct
      361 tcgctggttt acggttataa acaaagaaac cgagcaagcc accaatcatg gtcacacaaa
      421 ctagaagaat atcaaatttt tgctcattga aggcgatgac agagtaagct agaagactga
      481 taacaactga gatagaagcc aatccatcaa taccatctgt caaattaact gcatttgaaa
      541 aaccgaccag ccagaacaga acaaatggga aatagagaac tcccaaatgt accatgtgac
      601 caaatacatt caattctccg ccacctgctc ctcttacgtg gacaaagtag aagacaatcc
      661 ctcctaaaat ttgtagagca agcttttgtt taggattaag accttcattt attttacgga
      721 aaatttttaa aaagtcatcc aaaaatccta ctacaccata aagggcaagg atgaagagga
      781 tggcaaggac accacccgtc aacagttgaa aggccgttgc aaacaacaag ctgacaagta
      841 tcgcaacaac gagaaaaact gttcccccca ttgttggtgt acctgcctta aactgatgtt
      901 gtttcacatc ttcgtgcatc tgttgcccct cgatgcgttt ggcttgataa aatgtaataa
      961 atcgtgggat taagagaacg gttgctagaa aagctaccaa tcccgacata agtgcgaatt
     1021 gcatgttagt ctcctaaggt tattgttatt ttctcggttt tattcaaagc ggtaccgacc
     1081 tctacacttt ggtcgactac ttttgagccc gttcctttat aggtcacttc gataccagtc
     1141 cattcagcaa atatatccat attctctttg gtgattgcgt acaggtctgg catttcttcg
     1201 aatttatttg tcaggagtag aacctgttgg ttggcgatta cgttacttcc tttttcgact
     1261 gaaacttttt taatttcagc accgtttcca aggataactg gttgaactaa ttgacggcga
     1321 agttcctcag ccgactcgcc tggtgcctta ccaatgcggt ctggcaattg atactctgtc
     1381 tcattagcaa cccgggtcaa tgctggcgca ggtgaatcca gattcaaatt gtctttcaac
     1441 agcatcgctt ctttcagtgt aggactgaca atgtcacgcc aagacaggac atttaatact
     1501 tccggttggc gaatggtcac atacatgata aattctgggt cctcagcagg gatcatggct
     1561 actacagagt tggtataggc gcctttaatg tacccttgac catcttcgct ggcaatttcc
     1621 gccgaacctg atttgactgc aatatcatag ccgtcaacct gaattgcagg cccctgtaaa
     1681 tcatgtgagt agagtgtgcc ataaacaggg tcagtaccga cattaatcat atagcgaagt
     1741 gtatcgtcgg cagcttgttc agaaactgga tttcccactt cttctttcga agaaactcta
     1801 gctgtatctg tattaggatt ataaagagct gagataaatt taggctctag cataatacca
     1861 ttgttcgcaa tggatgtaaa actacgaagc atctgtgctt ggtttgcaga aattccctga
     1921 ccaaacgttg acatggcgat agaaacgatg ttatcctctg gtaccattcc tggcgcctcg
     1981 tcccccatac caaaacgcgt tgggtagcca aaacggaact tagtgaggta atttagccat
     2041 ttttcatctc ccatctgttg ctgcaataag gtcatcccaa cgttactgga tagggagaag
     2101 ccttgcgcat aattgagagt cacagctgaa taacctgcat tgagggtcca gtcattgatt
     2161 ttcgcgtctg caataacgta ctcattattg gtataatatg catttggatc aaaggttcca
     2221 ttatcgatag ctgacgctac tgttagcacc ttcattgttg aaccaggctc aaaggcctct
     2281 tgatataaga gtgaccgctc tagtaggcct tcttgtccca gaccttcttt ggtatctgaa
     2341 tcatagcttg gcctttgggt cgtcgccagt atttcacccg tcttggctga aaccaaagtt
     2401 gcattcgcat atcgcccttt ggcgttatca aagaaggtat tcatattggt ttcaagagaa
     2461 cgttgcagat cggctgaaat tgtcgtatag acatcctgcc cgtttactgt ctccgtttca
     2521 accttctctg tcccaggtag gacacggcct tgactatctt tctcgtagat aacctttccg
     2581 tcttgaccag ccagaatatc attcagataa tattccaaac cactcacacc ctgtaaacta
     2641 taactaccat ccttattttc aaccggatta gctaacccga caaaaattga agcaaaattt
     2701 ccattcgaat acatccgtcc tggactagcg tcaaaggcaa tcccttcaat acctgccgcc
     2761 ttcatctctt cttggattga cgacattgta ctataggaga tattcttacc taaggtccca
     2821 aagtatacct gcttcagttc aggttgattc agctgctcca taacataatc tgtctccatt
     2881 ccgagatgct ttttaaagat ttctgctact ttgctgaact gagaagactg cacatacaaa
     2941 acttttttca gttctgacac atattctgtg tcaatgattg aatagactgt ataggtcgtt
     3001 gaatcttctg caataggaat tcctgtacgg tcgtatatcg tcccccgttt agcttgaacg
     3061 gtaacttcac gctggtgtac cgcatcagct ctctctgaca agtccacccc aaatttacta
     3121 tcagtgccga taatataggc aaagttgatt aaaaaaagaa aaaagacgaa aaccgtcaaa
     3181 agaagtaggc tctgtcctac tcttcgacga ttttttgacg gaatatatcg ttttttcaag
     3241 acataccgca agagtttatt atttcttctg ggcattattc ggctactcca atattgtcat
     3301 tattaaaagt taatccagct ttttcagcaa tttccatcaa gcgagctgaa cgtgtcaatt
     3361 cattgacagc ttgctttgca tcgttaattt caatctgttt ttggctaata tcttgattga
     3421 ctttggccat gccagattga agttgcaaaa gccgcgtttg cataaagata attcctatcg
     3481 caagggctaa tccagataat acgatgcttg aatagaaggc tttttctaca cgtgtgaagg
     3541 ttctaatttt atcaccgata acccgcatag tggcttctct acgtttttct tgcaacatag
     3601 actctctcct atttatgtac tttcttagct acacgcagtt tggctgaatg cgcgcgatta
     3661 tttgcctcta attcttcttg acttggcaaa atcggcttgc gattgaccaa ttcaagtgga
     3721 gccttcaagt catctggaat aaatggcaaa ccttttggaa catcaatcgt acttgcttct
     3781 ttgaagagtt gtttggtcaa acgatcttct aaagaatgga aagtaatcac agaaatccgg
     3841 ccatccaaag ccaataagtc aatggcctgc tggatagatt cgtctgctgc tcccaattca
     3901 tcattgactt caatccgaat agcctggaaa atctgcttag caggatgccc cttcttctta
     3961 agttccttgg ctggcttggc agatttgatc agctctgcca actcagtcgt tgtttcaatc
     4021 ggcttgaccg cacgcgcctg ttcaatctta cgagcaatct gcttggaaaa tttatcctca
     4081 ccatatttga agaaaatccg caccaaatca tggtagtcat aggtattgac cacatcataa
     4141 gccgtcaaat gtccctcacg attcatccgc atatcaagcg gagcatcttg tttgtaagaa
     4201 aagccacgct gccgctcatc caactgtgga ctagatactc ctaaatcata acaaatccca
     4261 tcaatctctg ttacacctag ctccgccaag cgagtcttga gattgcggaa attatccctg
     4321 ataaaggtca cttgtccctt ttcaatgtag gatgccaagc gaatatgggc ataatcaata
     4381 gcagtctgat cctgatcaaa ggcatagaga tgccccccat ccgtcaactg actgagtagg
     4441 tactcactat gccctgctcc acccagcgtt gcatctacat aaattccatt tggtttgatg
     4501 tctaacatat ctactgtctc atgcaagaga acagttgtgt gattaaattc cttgctcata
     4561 tcttttctat tgtaccacaa aacaatacaa aaagttgttg caaacttttt acaaaaaaac
     4621 tgtcaaatat agttgacaac ttatatgaac aggtatatac taacagtaaa gaaacatgtc
     4681 acatatagtt gacatcaaca gggaggtctc ccacattttt ttacacttgt atgtcggata
     4741 taattgacaa tattttaaag aggctgggct caag
//
LOCUS       DASFRC010000169         4738 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.169, whole genome shotgun sequence.
ACCESSION   DASFRC010000169 DASFRC010000000
VERSION     DASFRC010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4738)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4738)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4738
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.169"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            102..944
                     /locus_tag="U1087_001937"
     CDS             102..944
                     /locus_tag="U1087_001937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEM4756374.1"
                     /translation="MTRYTFSNGVTVPKIGFGTWQIPDGEVAYGAVSYALEAGYRHID
                     TAQIYGNEASVGRAIADSGLAREDIFLTTKVWNDKIGYEDTLASVEESMQKLQVDYLD
                     LLLIHWPNPKAIRDSIGWKERNAQVWKALEELYRAGKVKVIGVSNFMEHHLEALLETA
                     EIIPMANQIMLAPGTPQSELVAYCKAKGILLEAYSPFGTGSLFQSQEAADLAKEAGCS
                     VAQLALAWSLDKGFLPLPKSTSPENIKANLEIDGLAISPTAVAKLDKLEGVKGRLDPD
                     QAEF"
     gene            1026..3182
                     /locus_tag="U1087_001938"
     CDS             1026..3182
                     /locus_tag="U1087_001938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HEM4756375.1"
                     /translation="MEEKYLKIAQELGVSLKQIDTVLSLTAEGNTIPFIARYRKDVTG
                     NLDEVVIKSIIDRDKALTALADRKATVLAKIEEQGKLTDQLRQAIEEAEKLADVEELY
                     LPYKEKRRTKATVAREAGLFPLARLILQNVADLEEQAASFICEGFDTAQACLAGAVDI
                     LVEAISEDNKLRAWVYHEVQTNSNLTSELKDQEADEKEVFQIYYDFSEKVAKMQGYKT
                     LAINRGEKLGVLKVTFEHNVDKMVRFFELRFPQTNSYIKDVIQQAIKKKILPAMERRI
                     RTELTEEAEEGAIQLFSKNLRNLLLVSPLKGKVVLGFDPAFRTGAKLAVVDQTGKLLT
                     TQVIYPVEPAGQRQIAQAKKDLADLIGQYQVEIIAIGNGTASRESEAFVADLLKDFPD
                     VSYVIVNESGASVYSASELARYEFPDLPVEKRSAISIARRLQDPLAELVKIDPKSIGV
                     GQYQHDVNQKSLSESLDFVVDTVVNQVGVNVNTASPALLAHVAGLNKTISENIVKYRE
                     ENGALTSRQQLKKVPRLGDKAFEQAAGFLRISDATNFLDNTGVHPESYKAVENLLELL
                     AIDHLDEAAQEKLKQVTIADTAEKIGVGQETLKDIVADLLKPGRDLRDDFEAPVLRQD
                     VLDVKDLVVGQELQGTVRNIVDFGAFVDIGVHEDGLVHISRMVKRKRDKNGRQQALPH
                     PSEVLAVGEIVTVWVVEVDIKRNRIGLSLLKPNGSE"
     gene            3169..3594
                     /locus_tag="U1087_001939"
     CDS             3169..3594
                     /locus_tag="U1087_001939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000778579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family protein"
                     /protein_id="HEM4756376.1"
                     /translation="MDLNKYVQEVSLQDFGKEFQHVAIWNRRLRSTGGRFFPRDGHLD
                     FNPKHLEEQGLEVFRKIVRHELCHYHLYFEKKGYRHGDRDFKELLAAVDGLRYAPKLE
                     QAAKPSLLYTCQSCGQVYQRKRRIDLKKYRCGKCRGNLL"
     gene            3672..4433
                     /locus_tag="U1087_001940"
     CDS             3672..4433
                     /locus_tag="U1087_001940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756377.1"
                     /translation="MTQKREERLIELYEKGVLTKEEARACFKEMNQEPDFLFVEEKVK
                     LNFTLPSFKVFASSKLKQSYSFEGIESLFLKLSEGRLTLAKSKNNQISVEICYNQDAP
                     EDRLPHLYVEKKCLYFSSGLACRLTISLPQEWMSVLDLELGQADARLDYLPFEDISIR
                     SSRDKKQQDIRLTTCGGYPQHLYVQLAQAPLTLHTGKGQGIRGQIESQSGHVLVNRRK
                     KNSPYQFEKSGNDLLFLKVQTGQGGFYVKGIKDVN"
     gene            4423..4695
                     /locus_tag="U1087_001941"
     CDS             4423..4695
                     /locus_tag="U1087_001941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspC domain-containing protein"
                     /protein_id="HEM4756378.1"
                     /translation="MSIELYKVRQGKIVSGVLAGIAHKLGWESWVTRAIFIAGLLLGK
                     SFLLLIALYIAAAYFLPYKEDRDAERYGTGPRKIKEAEKINKSWFE"
BASE COUNT         1330 a          918 c         1181 g         1309 t
ORIGIN      
        1 tgagcagaca ctttcgggtg tcttttattt ttaggtcgca ttattttgta ttgattgaca
       61 atttagttta tactggggat agaagaaata ggaggtcttt tatgacaaga tatacgtttt
      121 caaatggtgt aactgttcct aaaattggtt ttggaacttg gcagataccc gatggtgaag
      181 tggcgtacgg tgcggtttct tatgcattgg aagctggtta tcgccatatt gatactgctc
      241 aaatttatgg caatgaagct agtgttggtc gagctatagc tgatagtggc ctagctcgtg
      301 aggacatttt tttaacaact aaggtttgga atgataagat tggctatgaa gatacccttg
      361 cgtcagtaga agaatccatg caaaaacttc aggtggatta tctggatttg ttactgatcc
      421 attggccaaa tccaaaggct attcgcgaca gcattggctg gaaggaacgc aatgcccaag
      481 tttggaaggc attagaagag ctctatcgtg ctggaaaagt gaaagtaatt ggagtttcta
      541 actttatgga acatcatcta gaagctttgc tggaaacggc tgagattatc ccgatggcta
      601 atcagattat gttagctcca ggaactcctc agtcagaatt agttgcttac tgcaaagcca
      661 aagggattct cttggaggcc tatagcccat ttggtacagg aagccttttc caaagccaag
      721 aagcagctga tttggctaaa gaagctggtt gtagtgttgc acagttagcg ttggcttggt
      781 ctttagataa aggctttctc cctctcccga aatcaactag tccagaaaat attaaggcga
      841 atttggaaat tgatggcttg gctattagtc cgacagcagt tgcaaagttg gataaactag
      901 aaggagtaaa aggtcgactt gacccggatc aggctgaatt ttaattagct attgagagca
      961 tgtagtttat ctacgtgctt tttctattga gtcatttgta ccgctttcat gctataatag
     1021 tagctatgga agaaaaatat ttgaaaattg ctcaggaatt gggcgttagt ttaaaacaga
     1081 ttgatacggt tctctctttg acggctgaag gcaacaccat tccctttatc gctcgttatc
     1141 ggaaggatgt gacggggaac ttggacgagg tggtcatcaa gtctattatt gatcgggata
     1201 aggccttgac tgctctcgct gaccgtaagg ctactgtcct tgccaagatt gaagaacaag
     1261 gaaaattgac agaccagctc cgtcaggcta tcgaggaagc ggaaaagttg gcagatgtgg
     1321 aagaactcta cctgccttat aaggaaaaac gtcggaccaa ggcaacggtg gcgcgtgagg
     1381 ctggactgtt cccgctggct cgtctaattt tgcagaatgt ggctgacttg gaagaacagg
     1441 ctgctagttt catctgtgaa ggttttgata ctgctcaggc ttgtttggct ggggctgtgg
     1501 atattttggt cgaagctatc tcagaagaca ataagcttcg ggcctgggtc taccatgaag
     1561 tacagaccaa ttcaaacctt acttcagagc taaaagatca agaagcagat gaaaaagaag
     1621 tctttcagat ttattatgat ttctctgaga aagtggcaaa aatgcagggc tataagactt
     1681 tggccattaa ccgtggtgag aaattaggcg ttctaaaggt tacttttgaa cacaatgtgg
     1741 ataaaatggt tcgtttcttt gagctacgtt ttccacagac caatagctat atcaaggatg
     1801 tgatccagca ggctattaag aagaaaattc tacctgccat ggagcgccgt attcggacag
     1861 aattgacaga agaagcagaa gaaggtgcta tccagctctt ctctaaaaac ctacgaaatc
     1921 tgctccttgt atctcccctc aaaggcaagg ttgtccttgg ttttgaccct gcctttcgaa
     1981 caggggctaa gttggcggtt gtagaccaga ctggaaaact tttgactaca caagtcatct
     2041 atccagttga gccggctggt cagcgacaaa ttgctcaggc aaaaaaagac ttggcagacc
     2101 tgattgggca ataccaagtg gaaatcattg ctatcggaaa tggaacggcc agccgtgaat
     2161 cggaggcttt cgtcgctgat ttgctcaagg atttccctga tgtttcctat gtcatcgtca
     2221 atgaaagcgg agcctctgtc tactcagctt ctgaactggc cagatatgag tttccagacc
     2281 tccctgtgga aaaacgctct gccatttcca tcgcccgccg tctgcaagac cctctggctg
     2341 agctggtcaa aatcgatcct aagtccatcg gtgtcggcca gtaccagcac gatgtcaacc
     2401 agaaatctct gtctgaaagt ctggactttg tggttgatac ggtggtcaac caggtcggtg
     2461 tcaatgtcaa tacggccagt cctgcccttt tggctcacgt tgctggtctt aacaagacca
     2521 tttcggagaa catcgtcaag taccgcgagg aaaatggtgc tctgacctct cgtcagcaac
     2581 ttaaaaaggt gcctcgtctg ggtgacaagg cctttgagca ggcagctggt ttcttgcgca
     2641 tctcagatgc gactaatttt ttggacaata ctggcgtgca ccccgagtct tacaaggctg
     2701 tggaaaacct gttagaactt ctagctattg accacttaga tgaggctgcg caggaaaaat
     2761 taaagcaggt gaccatcgca gatacggcag aaaaaatcgg tgttggtcag gaaaccttga
     2821 aggacatcgt cgcagacttg ctcaagccag gtcgtgattt acgggatgac tttgaagcac
     2881 cagtcctccg tcaagatgtc ttggatgtca aggatttggt agttggacag gaattgcaag
     2941 gtacggttcg caatattgtg gactttggag cctttgtgga tatcggtgtc cacgaagatg
     3001 gtctggtcca catttcacgc atggtcaaac gtaaacggga taaaaatgga cgccaacaag
     3061 ccttgccaca tccaagcgaa gtcctcgccg ttggggaaat cgttactgta tgggtggttg
     3121 aagtggatat caaacgtaac cgaatcggtc ttagcctttt gaaaccaaat ggatctgaat
     3181 aagtatgtgc aagaagtctc cttgcaagac ttcggtaagg aatttcagca tgtagcaatc
     3241 tggaacaggc gattacgctc aacgggtggt cgcttttttc caagggatgg gcatttggat
     3301 ttcaatccca agcatttgga ggagcaaggt ttagaagtct ttcggaagat tgtccgccac
     3361 gagctctgcc actaccatct ctactttgag aagaaaggct atcggcacgg agacagggat
     3421 ttcaaggaat tgttggctgc ggtggacggc ctgcgctatg ctcccaaact ggaacaagct
     3481 gccaagccta gtctgctgta tacctgtcaa tcctgtgggc aagtctacca gcgcaagcgt
     3541 cgcattgatc taaaaaaata ccgatgtggc aagtgtaggg gaaacttact ttgaaagaat
     3601 agagaatcag tcttcgggct gatttttttg tggagaaatg tgatatacta gagtagaatt
     3661 gaggtgagtc tatgacgcaa aagagagaag aacgcttaat tgagttatat gaaaaaggtg
     3721 tcttgaccaa ggaagaggcg cgtgcctgtt ttaaggaaat gaaccaagaa ccagactttc
     3781 tttttgtgga agaaaaagta aaattgaatt ttaccttgcc aagttttaag gtctttgctt
     3841 cctccaaatt gaaacaatcc tatagttttg aagggattga atcactcttt ttaaaattat
     3901 ctgagggacg tctaactttg gctaagtcta aaaataatca gattagtgtg gagatttgtt
     3961 acaatcagga tgcacctgaa gatagacttc ctcatcttta tgtagaaaaa aaatgcctct
     4021 atttcagcag tggcttggcc tgtcgtttga caatcagctt gccacaggaa tggatgtccg
     4081 tattggactt ggagttgggg caggccgatg ctcgcttgga ttacttacca tttgaagata
     4141 tttctatccg cagttcaagg gataaaaaac aacaggatat tcgcttgacg acttgcggtg
     4201 gttatcccca acacttgtat gtgcaactag ctcaggctcc cttgacttta cacactggca
     4261 aaggccaggg aattcggggg cagattgagt cgcaatcagg tcatgtcttg gttaaccgga
     4321 gaaagaaaaa tagtccctat cagtttgaaa aatctggcaa tgatttactt ttcttgaagg
     4381 tacaaacagg tcaagggggc ttttacgtga aaggaataaa agatgtcaat tgaattgtat
     4441 aaagtaaggc aggggaagat agtatctggg gttcttgccg gcatagcgca taaattgggc
     4501 tgggaatcct gggtaacacg cgcgatattt attgcaggtc tcctcttagg caaatccttc
     4561 ctccttctga ttgctctcta tattgcagca gcttattttt taccatataa ggaagatagg
     4621 gacgcggaac gctatggaac aggtccacgt aagataaaag aagcagaaaa gataaataag
     4681 tcttggtttg aataatgcaa aaaaaaactt gagtttaaag gctcaagttt tttgtatg
//
LOCUS       DASFRC010000170         4689 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.170, whole genome shotgun sequence.
ACCESSION   DASFRC010000170 DASFRC010000000
VERSION     DASFRC010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4689)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4689)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4689
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.170"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..3765
                     /locus_tag="U1087_001942"
     CDS             <1..3765
                     /locus_tag="U1087_001942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756379.1"
                     /translation="KARDSQASATALRNDLNLQASKILEQARAQTALTNRVSIVETLA
                     DGTRSTVAELSKTVSKATGDITSVNSRTKTVEDTLSQTRTQYEALTQTVNTQTGQIES
                     INRKTADLQSGIDGVTERFESLRIEDNLLLNSSFNENLNQWQGTGVTIVDGKARIIGE
                     LNKTKYIYQSIKSQIANDDVSQVYIASISVKVTNYVAGSINPFLALYISGRKNDSVKT
                     WFGATYLTAARLEAVNNRGVVQFTTTFKVNVPRSQIGSMEFNIYARDFTGEVEFEKVS
                     LRRGDIDLGWQASPEDLRSEIASYKRTADEASAELSRQIQLADGKAVDAKTYAQQTAT
                     AINTRLESLETYKNAEGARVEQYLTASREETARQLTAERTAIATNYVAKSTYDENVRG
                     TTLKLNEIKTTADTAKQNLAVYQNTVDRKLEELTSSTQTLDGKINTASAKVDTVAGQI
                     RTEISEVEGKIPTEIGGKNLLINNKMATYSGHSMSSRTTERLAGRGAWYIEYKVDFKP
                     NTDYTLSCESIVKNNGDFNNLRIRIFDSSVTIKKMNWLDFNGLLNFRTSDNIVSGDKL
                     LIYVSYSNVSDYEIIKLKLEETRVKSAYSPAPEDLIDELSSVKTTITQTASGVEQLST
                     SLSATNSKVTTAETNIRQLVNDVSSKVSQTDYNTLTGRVDSAETAITQNATEISKRLT
                     STQVESAITGKGYQTKSQVDDNITGRGYITNSALQPYALSTTVQNLVQETADSFSRTI
                     SRVENKIPTKIGVTNLLGGTSSDWKTIRVTQYNGLIKSYNPQEWALLGIKTGDSVTFS
                     VDVKTTSGKKLRSRISFYGANTHYYSEAFVVNGEGRLSVTGVVPDGITSVRLFVDANL
                     TVATNTGVTEESCRREKLEIGAIATDWSPAPEDLATVTALHSVRDTVDSHTRTIGAVG
                     TTGSILDNVSKVTQTAAGLVQEVSGTNGLKTQVSTLAGSYAIKSLTKAGDVLGQINLN
                     KDGSIKIDGSLVQITGKTYIQDGVITSAKIGSLDAGKLTAGYISSNRFQADSITGDKL
                     VMDSAFFNKFAADEAKLKQLFAKNAFITQVQAVNLSAKQIAGGIAKALNGGMDVNFDE
                     SKINFYTNVAAIRRIYTGHPTQFIKFETEGNYSRTIIGSNRNGGEVFNSATFAGIVVE
                     NTNNINTEDNVRVYGDNTLFRHAQGDVGWNINSVTQRIVPANINAESEIWSKHFVAPD
                     KNSKPVRLDTAVAALWDIWNHIIYNNFEFNEALRTHIKARRDNWKFELNL"
     gene            3774..3971
                     /locus_tag="U1087_001943"
     CDS             3774..3971
                     /locus_tag="U1087_001943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001071121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756380.1"
                     /translation="MNQALALTNQELANQLAEEKNTKNLLAVQLTEAQQTIAGLQAEI
                     TELTKQLDEATKPAEEIIEGE"
     gene            3974..4318
                     /locus_tag="U1087_001944"
     CDS             3974..4318
                     /locus_tag="U1087_001944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756381.1"
                     /translation="MTETTNNTLLDLSTITEPFDLATALQYMKENGEFIRCKNATNDF
                     YMYRDVQRRPGIVNGRRQFVEVETVWAFNQWGGTTTTINVADLFNEEFYIMQFDENGN
                     PDWTEPTAGVEA"
     gene            4322..>4689
                     /locus_tag="U1087_001945"
     CDS             4322..>4689
                     /locus_tag="U1087_001945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756382.1"
                     /translation="MPDQILHIIGAVAPTIGVIATGGFGYLAARSNNLNKAQFGELKQ
                     GMEDIKDDVSNLKKVADDNQVSLVAVQEEIDTLKNSGRSSRRYTLYKDLDTAIARGWT
                     TLEERREIAKLFDSYKILGG"
BASE COUNT         1536 a          932 c         1093 g         1128 t
ORIGIN      
        1 aaggctagag atagccaagc aagtgctaca gctttgcgaa acgacctcaa cttgcaagcg
       61 agcaagattt tggagcaagc acgagcacag acggctttga ccaatcgtgt gtcgatagtc
      121 gaaactctgg cagatggaac gaggtcaaca gtcgcagaac tctctaaaac cgtttctaag
      181 gcgactggag acatcactag tgttaacagt cgaaccaaga ccgtagaaga cactctgagc
      241 caaacgagga cccaatatga ggctctgacg cagactgtca atactcagac aggacagatt
      301 gagagtatca atcgcaagac tgctgacttg cagagtggca tagatggggt gacggagcgg
      361 tttgagagtt tgaggataga agacaacctt ctgctcaata gctcttttaa cgaaaacttg
      421 aaccaatggc aaggaactgg agtgactata gttgatggta aagcgagaat tataggagaa
      481 cttaataaaa ccaagtacat ttaccaaagt atcaagtctc agatagctaa tgacgatgtt
      541 agccaggtat acatagcatc aatctcagtt aaggtcacta attatgtggc tggttctata
      601 aatccatttc ttgcgctgta tataagcggt agaaagaacg acagtgtaaa aacatggttt
      661 ggcgcaacat atttgacagc cgcccgcttg gaagcagtca ataatagagg agttgtgcag
      721 tttaccacta ctttcaaagt aaatgtgcca cgtagccaga taggcagtat ggagtttaat
      781 atctatgcaa gggatttcac aggggaagtg gaatttgaga aagtgtcact cagacgtggg
      841 gatattgatt taggctggca agcttctcca gaagacctcc gctccgaaat cgcaagttat
      901 aagcgtacag cagatgaagc aagcgcagag ttatcccgtc aaatccaact ggcagatgga
      961 aaggcagtag atgctaagac ctacgctcag cagacagcga ctgcaatcaa tactcgatta
     1021 gagagcctag aaacctacaa gaacgcggaa ggggctagag ttgagcagta tttaactgct
     1081 agtcgggagg agacagcgag acagttaact gccgagcgta ccgcgattgc tactaactac
     1141 gttgctaagt ctacctatga cgaaaatgtc cgcggaacaa cgctaaaact taatgagatt
     1201 aagacgaccg ctgatactgc taaacaaaat ttagcagtct accaaaatac agtcgacaga
     1261 aagctggaag aattgacctc aagtacacag acgctggatg gcaaaatcaa tactgcaagt
     1321 gccaaggtcg atacggtagc cgggcagata cgtactgaga ttagcgaggt ggaagggaag
     1381 ataccgacgg aaatcggtgg caagaactta ctaatcaata ataaaatggc tacatattct
     1441 ggtcattcta tgtcaagtag aacaacagaa agattggccg gaagaggagc ttggtacatt
     1501 gagtataaag tagattttaa acctaataca gactatacac tatcatgtga atccattgtc
     1561 aaaaataatg gtgattttaa taatttaaga atcagaattt tcgattcttc cgtcaccata
     1621 aaaaaaatga attggctaga ttttaatggg ctattaaatt ttagaaccag cgataatatt
     1681 gtttcaggcg ataaactttt gatctacgta tcatacagta atgtaagtga ttatgagatc
     1741 attaagttga aacttgagga aactcgtgtt aaatcagcat actctccagc ccctgaagat
     1801 ttgattgatg aactatcatc tgtcaaaacc acaatcactc aaactgcttc gggtgtcgag
     1861 cagttgtcga caagcctatc tgcaactaat agtaaggtca cgactgctga aaccaacatc
     1921 cgacagctgg ttaacgatgt atcaagcaaa gtatcgcaaa cggactacaa tacgctgact
     1981 ggccgagttg atagtgctga gactgccatc actcaaaatg cgactgagat tagcaagcga
     2041 ttgactagta cacaggtcga gtcggcaatc actggcaaag gctaccagac caaatcacaa
     2101 gttgatgata acatcacagg tcgtgggtat atcactaata gtgcattaca gccttatgcg
     2161 ttatctacga ctgtgcaaaa tcttgtgcaa gagacggcag atagttttag tcggacgata
     2221 agtcgggttg aaaataaaat tccaacaaag ataggtgtca ctaatttgct aggaggcact
     2281 agcagtgatt ggaagaccat tcgtgtcaca caatacaacg gtttaatcaa gtcttacaat
     2341 ccacaagagt gggcgttgtt aggtattaag actggcgatt ccgttacttt ttctgttgat
     2401 gtaaaaacca catcaggcaa gaaacttcgg tcacgcatct ccttttatgg agcaaatacg
     2461 cattactata gcgaagcttt tgttgtcaac ggagagggac ggttgtctgt gacaggagtt
     2521 gttccagacg gtataacaag cgtacgatta tttgtagatg caaatcttac ggtagcgact
     2581 aacacgggag ttacggaaga aagttgtcga agggagaaac tagaaatagg tgctatcgca
     2641 acagactggt caccagcacc tgaagacctc gctaccgtca cagccctgca ctcagtccgt
     2701 gacacagtcg acagtcacac tcgtactatc ggcgcagtcg gcacgactgg aagcattttg
     2761 gacaacgtca gcaaagttac tcagactgca gcaggtctgg tccaagaggt gtctggcact
     2821 aatggactta agacacaagt cagcacgtta gcagggtctt atgctattaa aagcctgaca
     2881 aaggctggcg atgtgttggg tcagataaac ctaaacaaag atggctctat taagattgac
     2941 ggtagtctcg tacagattac tggtaagaca tacatccagg acggtgtgat tacatctgcc
     3001 aaaattggta gcttagatgc tggcaagcta acagcaggat atatttctag caatagattt
     3061 caagcagact ctatcacggg tgataagttg gtaatggatt cagcattttt taacaaattc
     3121 gcagctgacg aggctaaact aaaacaacta tttgctaaga atgccttcat cacacaggta
     3181 caggctgtga acttgtcagc taagcagatt gctggcggta ttgctaaagc tctcaacggt
     3241 ggtatggatg tcaatttcga cgaaagcaaa attaactttt acacaaacgt agctgcaata
     3301 agacgtatct atactggaca ccctactcaa tttataaaat tcgaaactga agggaattac
     3361 tcgcgaacaa tcatcgggag caatcggaat ggtggagaag tttttaactc tgcaacattt
     3421 gcggggattg ttgtggaaaa cacaaacaac ataaacacag aagataatgt aagagtctat
     3481 ggagataaca cgctattcag gcacgcccaa ggtgatgtcg gttggaatat caattctgtt
     3541 actcaacgta tagtccctgc caacatcaat gcagagtccg aaatttggtc taagcacttt
     3601 gtggctccag ataaaaattc gaagcctgtc cgattggata cagcggtggc agcgttatgg
     3661 gacatatgga atcacattat ttacaacaac tttgagttta acgaagcgct tcgtacccac
     3721 ataaaagcta gacgggacaa ctggaaattt gaattaaatt tataggagga atcatgaatc
     3781 aagcactcgc tttgacaaac caagaactag ccaaccaatt ggcagaagag aagaacacta
     3841 agaacttgtt agctgtccag ttgacagaag ctcagcagac catcgcaggt ctgcaggcag
     3901 aaattactga gttaacaaag caactggacg aagctactaa accagcggaa gaaatcatcg
     3961 aaggagaata atcatgactg aaactactaa caatacttta ctcgacttat caaccattac
     4021 agaaccattt gaccttgcga ctgcattgca gtacatgaag gaaaacgggg aatttattcg
     4081 ctgtaaaaat gcgacaaatg atttttatat gtaccgtgat gtccaacgtc gaccaggtat
     4141 tgtcaatggt cgtcgtcaat tcgtagaagt tgaaactgtg tgggccttta accagtgggg
     4201 cggaactaca acaacaatca atgtggcaga tctcttcaac gaggagttct acatcatgca
     4261 gtttgatgaa aacggaaatc cagattggac agaaccaaca gctggagtgg aggcgtagcc
     4321 tatgccagat caaatcttgc acatcatcgg agcggtggca cctactattg gtgtcatcgc
     4381 tactggtggt tttggctatc ttgcagcacg gtctaataat ctaaataagg cacaattcgg
     4441 cgaactcaag cagggtatgg aagacatcaa ggatgatgtg tccaacttaa aaaaagtcgc
     4501 agacgacaac caagtcagct tagtcgctgt ccaagaggaa attgacactt tgaaaaacag
     4561 cggtagaagt agccgtcgtt atacgttata caaggatttg gacacagcaa ttgcccgtgg
     4621 ttggacaacg ctggaagaac gtcgagagat tgccaagctt tttgatagtt ataaaatttt
     4681 aggcggaaa
//
LOCUS       DASFRC010000171         4660 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.171, whole genome shotgun sequence.
ACCESSION   DASFRC010000171 DASFRC010000000
VERSION     DASFRC010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4660)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4660)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4660
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.171"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..2134)
                     /locus_tag="U1087_001946"
     CDS             complement(<1..2134)
                     /locus_tag="U1087_001946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HEM4756383.1"
                     /translation="MIRKEHNEFTRVQIPAALHLTRLGYDYLSANSKEVKERDPDTNI
                     LLSIFKQQFLKLNNYASEADFEREFENIRLELEQDDIGRSFFNRIHADSGYTYINWDN
                     IEENTFHIALEVTCQNGEEEFRPDITIFINGLPLSYIEVKQPNAIREGKTGIQSEKDR
                     TKFRFENKKFRRFNNITQLIAFSDNLPYDDSQGQQLQGSFYCTNAYSGTKFNSFKEEQ
                     ERQVQSSLSSLTEEMIDLVLTDVNRFALKSQVEFRTNLDPASPCNSFLTSLYQKERLF
                     FMLRYGLVYVEERDEHDQIQLQKHAMRYPQYFATKAIERGLEEGMKKGVIWHTQGSGK
                     TALAFFNIRYLRDFYAKRGIVPQFYFVVDRLDLADQAFKEFSKRGLKVKRINKPSELN
                     QIQDQHHVSVVNIQKFKESSDLTDHSGYDLNRQNIYFIDEAHRSYNEKGSYLPNLYNA
                     DKEAVKIALTGTPLIATKADGKTKETAVTTRDIFGDYIHKYYYNQSIADGFTLRLMRE
                     DIETSYKETLQAVHEEIQKGSIEKKEIFAHPRYVSPMLDFILDDFTRAREILFGDQSI
                     GGMVVCDSSEQAQELHKQLEDRRKAGLTSFTSTLILHDAGDKEYKKEEVDKFKDGLTD
                     FVIVYSMLLTGFDAPRLKRLYLGRKIKAHNLLQTLTRVNRPYKDYAFGYVIDFADISK
                     EFDKTNKAYLEELNREYQAALIEEDGDNP"
     gene            complement(2315..3631)
                     /locus_tag="U1087_001947"
     CDS             complement(2315..3631)
                     /locus_tag="U1087_001947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-containing oxidoreductase"
                     /protein_id="HEM4756384.1"
                     /translation="MEQFDLLVIGFGKAGKTLAGKLSAAGKKVALVEENPAMFGGTCI
                     NIGCIPTKTLLVAADKNWTFEQVMEQKETVTTRLRNKNEAVLKGSGANLYQGHARFVA
                     DKVVEVSAGEESIQLTAETIVINTGAKSRVLPIPGLLDTAHVYDSTGVQNLEVRPNKL
                     AIIGGGNIGLEFAGLYSKLGSQVTVYEASSAILPREEEVVAKLAKEYMEEAGVTFVLG
                     ANIEQVAAAGEQVAVTVNGQTAIFDAVLYATGRVPNTADLGLENTATELLENGAVKVD
                     DYCETTVPGVYAVGDVNGGPQFTYTSLDDFRIVFGKLTGTGTYNLSQRKSIPTSVFIT
                     PVLSRVGLTEKEAKEAGYDYIANELLVANMPRAHVNNDLKGIFKVIVDKESKLVLGAT
                     LFGRNSEELINLIAMAIDNKIPYTYFKTQIFTHPTMAENLNDVFNF"
     gene            3849..4658
                     /locus_tag="U1087_001948"
     CDS             3849..4658
                     /locus_tag="U1087_001948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018381403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PrsW family intramembrane metalloprotease"
                     /protein_id="HEM4756385.1"
                     /translation="MKEKFQMCKTYLPVVLATIGFVNGCKIIFGELGKPNGMEAKYPL
                     FLLTISLVAIYIIPLLVLTYSLAKRYNISKQVIGLSWLLGLTSSISFSELGHTAIGYF
                     LLEIVKASNNFLNDWGAAISGPLAEEIGKGLSVLLVLLICRKMTLKNALVSGVIVGLG
                     FQIMEDITFVFRDMFMNKLDGFETILERVGQAGWAHWVFTLLFAIGLVALLTKNTGMS
                     KAQGVFWIGASFGIHFLFNSPFNTGIFQTVFPILSIFLGLLAYQTVEKLSE"
BASE COUNT         1325 a         1024 c          899 g         1412 t
ORIGIN      
        1 aaggattatc tccgtcttct tctatcaaag ctgcctggta ttcccgattg agttcttcca
       61 gataggcttt attggtcttg tcaaattcct tggaaatgtc cgcaaaatca atgacatagc
      121 caaaagcata atccttgtac ggacggttga cacgggtcaa ggtctgcaag agattatggg
      181 ccttgatttt ccgtccaaga tagagccgtt tcagccttgg tgcatcaaaa cctgtcaaga
      241 gcatggagta gacaatgaca aagtctgtta aaccgtcctt gaatttatcc acttcttctt
      301 tcttgtattc cttatcccca gcatcatgta aaatcaaggt tgaagtgaat gatgtaagcc
      361 ctgcttttcg acggtcttct aactgtttgt gtaattcttg tgcttgttct gaagaatcac
      421 agaccaccat tccaccgata gactggtcgc caaataagat ctctcgtgct cttgtaaaat
      481 catcaagaat aaagtctaac attggagaga cataacgtgg gtgggcaaaa atttctttct
      541 tttcaatgga gcctttttga atctcttcgt gtacagcttg tagagtttcc ttgtaagaag
      601 tttcaatgtc ttccctcatc aaccgtaggg taaaaccgtc agcaatggat tgattatagt
      661 agtatttgtg gatatagtcc ccaaagatat cacgagtcgt cacagctgtt tccttggttt
      721 taccgtcagc ctttgtcgca atcaaaggcg ttcctgtcag tgcaatctta acagcttctt
      781 tatcagcatt atatagattt ggcagatagg aacctttttc attgtaagaa cggtgagcct
      841 catcaatgaa gtagatattt tgccgattca agtcatagcc tgaatgatct gtcaaatcag
      901 aggattcttt gaatttttgg atgttgacaa cagaaacatg gtgctggtct tgaatctgat
      961 ttaactcgct tggtttgtta attcgtttga ctttgagacc acgcttgcta aattccttaa
     1021 aggcttgatc agccaaatcc aatcggtcta ccacaaagta aaattgcgga acgatccccc
     1081 ttttagcata aaagtctcgt aaatatcgga tattgaaaaa ggcgagagcg gtttttccag
     1141 aaccttgtgt atgccaaata acacctttct tcatcccttc ttccaatcct cgctcaattg
     1201 ccttggtcgc aaaatattga ggatagcgca tggcgtgttt ttgtagttga atctggtcat
     1261 gctcatctcg ttcttccaca tagactagac catagcggag catgaaaaag agccgttctt
     1321 tctgataaag ggaagttaaa aaggaattgc aaggacttgc aggatccaag ttggttcgga
     1381 attcaacttg cgacttgagg gcaaagcgat tgacatctgt gagaaccaaa tcaatcatct
     1441 cttctgttaa gctagacagg ctagactgta cttgtcgctc ctgctcttcc ttgaaagagt
     1501 tgaacttggt accagaatag gcattagtgc agtaaaatga cccttgcaac tgttgtcctt
     1561 ggctatcatc atagggaaga ttgtctgaaa aagcaatcaa ctgtgtgata ttgttaaacc
     1621 gtctgaactt tttattttca aatcgaaact tggtccgatc cttttcagac tgaatacctg
     1681 tcttcccctc tcgaatggca tttggttgtt tgacttctat ataactaagt ggcaaaccat
     1741 ttataaatat cgtaatatct ggtcggaact cttcttcacc attttggcag gttacttcta
     1801 aggctatatg gaaggtattc tcctctatat tatcccaatt gatataggtg tagccagaat
     1861 ctgcatgaat cctattaaaa aaacttcgtc caatatcatc ttgttccaat tccaagcgga
     1921 tattctcaaa ttcccgttca aagtcagctt cacttgcata attgttcaat ttaaggaact
     1981 gttgtttaaa aatggatagt aagatatttg tatccggatc tcgttcttta acttctttac
     2041 tattagccga aagatagtca taaccgagtc tggtcaaatg taaagcagca ggtatttgca
     2101 ccctcgtaaa ctcattgtgt tcctttctta tcatacatgc tctcctagtc tattcttacc
     2161 attcattata ccatatttgc aagtgcttac cgacaaaaaa ccgcccatta cggacggtca
     2221 tagtcagtca atgaaataag gtcactcgat gatcttgaca atagtctagg aaacgcagcc
     2281 acaactaata caagaagctt atctccctag agtattaaaa gttaaagaca tcattcaaat
     2341 tctcagccat agtcggatgg gtgaagattt gtgttttgaa gtaggtataa ggaatcttat
     2401 tgtcaatcgc catagcaatc aagttaatca gctcctctga attgcgacca aagagagtcg
     2461 cccccagaac aagcttactt tccttatcca cgataacctt gaaaatgcct ttgaggtcat
     2521 tattgacatg ggcacgtggc atattggcga caagcaattc gttggcaatg tagtcgtaac
     2581 ctgcttcctt ggcttccttc tcggtcagac caacacgaga cagcacaggc gtaataaaga
     2641 cacttgtcgg aatagacttg cgttggctca agttgtaagt accagtccca gtcaacttgc
     2701 cgaaaacgat acggaagtcg tctagggatg tgtaagtgaa ttgtggaccg ccattgacat
     2761 ctcccaccgc atagacacct ggaacagtgg tttcgcaata gtcatccacc tttacagcac
     2821 cattttccaa aagctcagtc gccgtatttt ccaagcccaa gtcagcagtg ttcggcacac
     2881 gacctgtcgc atagaggaca gcatcaaaga ttgctgtttg accattgact gtcacagcaa
     2941 cctgctcacc ggctgcggct acttgctcga tgttagctcc caagacaaag gtcacgccag
     3001 cttcttccat atactccttg gctaacttgg caaccacttc ctcttctctt ggtaaaatag
     3061 cagagctggc ttcatatact gtcacctgac tgccgagttt gctataaaga ccagcaaact
     3121 ccagcccaat gttaccacca ccgataattg ccaacttgtt aggacgaacc tccaaattct
     3181 gaacgccagt actgtcataa acgtgagctg tatccaacaa acctggaatt ggaagcacgc
     3241 gcgacttagc acctgtattg atgacaatag tttccgcagt cagttggatc gactcttcac
     3301 cggccgacac ttcaacgact ttgtccgcaa caaaacgtgc gtgaccttga taaagattag
     3361 caccactgcc tttcaagact gcctcgtttt tgtttcgcag acgagtggtg actgtttcct
     3421 tttgctccat tacctgctca aaagtccagt ttttatctgc cgcaaccaag agggtcttgg
     3481 tcggaataca gccaatgttg atacaagtcc cgccaaacat agcaggattt tcctcaacca
     3541 aagctacctt tttaccagct gcagaaagct ttcctgctaa ggtctttcca gccttaccaa
     3601 aaccgataac taacaaatca aattgttcca taagatactc cttttgtatt tttcaaccct
     3661 agtctatcaa aaaagaataa ttttggcaca attctgctac agctctatta tggagtccta
     3721 gttgcaggaa aaaacattac aataactgag aaggtttaga taaaaaatag gtgaataata
     3781 gacgaaatgt acttattttt gatacaatgt atccatacac cagtttatta atacagaaag
     3841 gtaaaactat gaaagaaaaa tttcaaatgt gtaaaactta tcttccagtc gtcttagcaa
     3901 cgattggatt tgtcaacggt tgcaaaatta tctttggaga attaggtaag ccaaatggca
     3961 tggaagctaa atatcctctc tttctcctaa ccatttcctt ggtcgctatt tacatcatcc
     4021 ccctactagt actgacatat tccttagcta aacgctataa catctccaaa caagttatag
     4081 ggcttagctg gcttttaggc ttaacaagta gcatctcttt ttctgaactg ggacatacag
     4141 ctatcggata tttcctgctc gaaatcgtta aagctagtaa taatttccta aatgactggg
     4201 gcgcagctat ttcaggtcca ttggcagaag aaatcggaaa agggctaagt gttctacttg
     4261 tactgcttat ttgtagaaaa atgacactaa aaaatgcatt ggtaagcgga gtgattgttg
     4321 gattaggttt ccaaatcatg gaagacatca cctttgtttt tagagacatg ttcatgaata
     4381 aattagacgg ctttgaaact attcttgaac gcgttggtca agctggttgg gcccattggg
     4441 ttttcacgct tctctttgcc attggcttag tagcccttct cacgaaaaat acaggtatgt
     4501 caaaagcaca gggagtattt tggatcggtg caagctttgg aatccatttt ctctttaatt
     4561 caccgttcaa cacgggcatc ttccagacgg tgtttcctat cttgagcatt ttccttggct
     4621 tacttgccta tcaaacggtt gagaaactat ctgaatagac
//
LOCUS       DASFRC010000172         4656 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.172, whole genome shotgun sequence.
ACCESSION   DASFRC010000172 DASFRC010000000
VERSION     DASFRC010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4656)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4656)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4656
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.172"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            64..1398
                     /locus_tag="U1087_001949"
     CDS             64..1398
                     /locus_tag="U1087_001949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HEM4756386.1"
                     /translation="MMYPRLVLARNLLKDSGVIFISIDDNEQANLKAICDEIFGEENF
                     VADVIWERAFAPVNLKKHFSESHDYILVYAKNVEFAVNHGIPRSEDSNSRYQNPDNDV
                     RGPWTSGDLSVGPAVPSNIYEIISPSGRSIFPPSGRSWLLSKERFEEFIADNRIWFGA
                     NGDNVPRIKRFLSEVKNTVTPMTIWKYADVGHSQSASQDLKKLFDGKAYFTYPKPVPL
                     MKQIVQLYSEKDGLILDFFAGSATTADAVMQLNAEDGGNRKYILCTLDEQVTDKSAAK
                     EAGYETIDQISRERIRRAAKKIQEEHPETVGKQDLGYRAYKLDTSNFKDVSQTPDSFT
                     QADLFDSVSNIKDGRTDLDLLFQIMLTWGMELSLPIAKTQIDGTDIYNVADGAMIACF
                     ADEISENVLRQIAKEEPLRAVFKDESFVNSAAKINLGQIFKEEAPGTKVKVV"
     gene            1402..4500
                     /locus_tag="U1087_001950"
     CDS             1402..4500
                     /locus_tag="U1087_001950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEM4756387.1"
                     /translation="MKLQFKQQQFQLDAVASVVAVFAGQGKHSGFDYHMDKGQGMDAE
                     LDMNFIGFRNAPIQLSQDIISQQVRSQQLRYGLKPSENLSIQKVDGRPSYNLTIEMET
                     GTGKTYTYIRTLMELNKQYAWLKFIIVVPSIAIREGVLNSFEIIADHFQMEYDKKPRY
                     FVYDSSRLGELDKFANSSDIQVMIINSQAFNATGADARRIHTEQESFRWRKPIDVIAA
                     TNPILIIDEPQSVEGKKTKERLEDFKPLFTLRYSATHKDKHDMIYRLDALDAYNKKLV
                     KKIAVKTVEQTSTTGTQGYLYLQELVPQKSGAPKARIEFEMRTKSGDVKRVTKLVEEP
                     FALFEESGNLPAYQGGWTLSHFDAREGENSIQIGANRKLYVGEVIGETNEDDIRRIQI
                     RETIASHLQKEERLYKRGIKVLSLFFIDEVAKYKCYDEQNDAYNGTYAQMFEEEYEAQ
                     VKALLADPNLHGSNFWHYLNKHQEGNPVHAGYFSVDKVKKSDKVKFVDYKSATEKKNN
                     QSNDKDAYDLIMKDKERLLSFEEPVRFIFSHSALKEGWDNPNVFQICTLKNTGTETEK
                     RQKIGRGMRLAVDQKGVRQDEELLGADVHNINKLTVIANESYEDFAKNLQRELKEILA
                     DRPSKVEVDLFVDKILENEAGQKLTVTKEVAKEIEYQLIKQDYIDSKGNLTAIYFEQK
                     ETSQFTLSENLAGYEVAVKDILETIYDANRYKIERENDSEVVFAREINPDNYNRQEFK
                     RLWESIHHKSTYYVEFDDEELIEKSVKALNESLFVKKPSYMITEAEAREMQAKHGLDF
                     KVNKNGKRQSVLDKSSIQLRYDLLGEIASRTELKRKTVANILKQISPSKFDMFSYNPE
                     AFIQQVSRLINEQKASQVIEHIRYNILEETFDSSIFTDNPLSGKVSDANMLKSEKGVY
                     NYVKVDSGTERKFKEDLERFDDVMVYAKLPSKFKISTPLGDYNPDWAIAFRDGSVKHV
                     YFVAETKGSMSSLQLKGAELAKIECAKAHFKALKEKGLIADDRIYDVVDSYEKLLEIV
                     RG"
BASE COUNT         1401 a          928 c         1098 g         1229 t
ORIGIN      
        1 caacgggtgg gcttgaccaa gaatgaaaaa tcctccgccc gctatcattc cgactggctc
       61 aatatgatgt accctcgcct agtccttgcc cgcaacctcc tcaaagatag tggagttatc
      121 tttatctcca ttgacgataa cgaacaagcc aacctcaaag ctatctgtga tgagatattt
      181 ggggaggaga attttgttgc tgatgtcatc tgggagagag catttgcacc tgtaaacttg
      241 aaaaagcatt tttcagaaag tcatgattat attttagtat atgcaaaaaa tgtagaattt
      301 gctgtcaatc atggaatacc tagaagcgaa gactcaaata gtagatacca aaatcctgat
      361 aatgatgtta gaggaccttg gacaagtggt gatttatcag taggaccagc agttccttca
      421 aatatttatg agataatttc tcctagcgga agatctattt ttcctccaag cgggagaagt
      481 tggttgctga gtaaagaaag atttgaagaa tttattgctg ataatcgtat ttggttcggg
      541 gctaatggag ataatgtgcc taggataaaa agatttttat cagaagtaaa aaatacagta
      601 actccaatga cgatttggaa gtacgctgat gtcggtcatt ctcagtctgc tagccaagac
      661 ttgaaaaaat tatttgatgg taaggcatat ttcacctatc caaaaccagt tccgttgatg
      721 aagcaaattg ttcaattgta ttcagaaaaa gacggcctga tcctcgactt cttcgctggc
      781 tctgcaacca cagcagatgc tgttatgcag ctgaatgcag aagatggtgg taatcgcaag
      841 tatattctct gtacgctgga cgaacaagtg acagacaagt cagctgctaa ggaggctggc
      901 tacgaaacca ttgaccagat ttctcgcgag cggattcgtc gggcagctaa aaagattcag
      961 gaagaacatc ctgaaaccgt cggcaagcaa gaccttggtt atagggctta caagctagac
     1021 acttccaatt tcaaagatgt cagccaaaca ccagatagct ttacgcaggc agaccttttc
     1081 gacagcgttt ctaacatcaa agacggtcgg acagaccttg acttgctctt ccagattatg
     1141 ttgacttggg gcatggagct atctcttccg attgcgaaaa ctcaaataga cggcacagac
     1201 atttacaatg tagcagacgg ggctatgatt gcctgctttg cagatgagat ttcggaaaac
     1261 gtcctccgtc aaattgccaa agaagaaccc cttcgtgctg tcttcaagga cgaatctttt
     1321 gtcaactccg cagcaaaaat caacctcggt caaatcttca aagaagaagc cccaggtacc
     1381 aaagtgaagg tggtgtaggg gatgaaactt caatttaagc aacagcaatt tcagttagat
     1441 gcggtggcct ctgttgtggc tgtttttgct ggtcagggca agcatagtgg ttttgattac
     1501 cacatggata aaggtcaggg aatggatgcg gaactggata tgaattttat cggtttccgc
     1561 aatgctccta tccagctttc acaggacatt atcagccagc aggtacgaag tcagcagctc
     1621 cgctatggac ttaaaccttc cgaaaaccta tccatccaaa aagtcgacgg tcgtccgtct
     1681 tacaatttga ccattgagat ggagacaggg acagggaaga cttataccta catccgtacc
     1741 ctgatggagc tcaacaagca gtatgcctgg ctcaagttta tcatcgtggt gcccagcatt
     1801 gccattcggg agggggtgct caactccttt gaaattatag cagaccattt ccagatggag
     1861 tatgacaaga agccacgcta ctttgtctat gactctagcc gtttgggaga gctggacaag
     1921 ttcgccaatt cctcggatat tcaggtcatg attatcaact cccaggcctt taatgccact
     1981 ggagcggatg ctcgtcggat tcacaccgag caggaaagtt tccgctggag aaagcccatc
     2041 gatgtcatcg cggcgaccaa tccgattttg attatcgatg agccccagtc ggttgagggg
     2101 aaaaagacca aagaacgctt ggaggacttc aaacccctat ttaccctccg ctactcagca
     2161 actcataagg acaagcacga tatgatttat cgtctggatg ccttggacgc ctacaataag
     2221 aagttggtta agaagattgc cgttaagacc gtggagcaga cttctaccac aggtacacaa
     2281 ggctaccttt atctgcaaga acttgttccg caaaaatcag gagctccaaa ggctcggatt
     2341 gagtttgaaa tgcggaccaa gtcaggcgat gtcaaacggg tgaccaaatt ggttgaagag
     2401 ccttttgctc tttttgaaga gtcaggcaac ctaccagcct atcaaggcgg ttggaccttg
     2461 agccattttg atgcgcgtga aggtgaaaat tccattcaaa tcggtgccaa tcgcaaactc
     2521 tatgtgggcg aagtgattgg ggaaaccaac gaagatgata tccgtcgtat ccagattcgg
     2581 gaaaccattg ccagtcacct gcaaaaagaa gaacgccttt acaaacgagg tatcaaggtg
     2641 ctatcccttt tcttcatcga tgaagttgcc aagtataagt gctatgatga gcaaaatgat
     2701 gcctacaatg gcacctatgc ccagatgttt gaagaagagt atgaagccca ggtcaaggct
     2761 ttattggctg atcccaacct ccatggaagt aacttttggc attatctcaa caagcaccaa
     2821 gaaggcaatc ctgttcatgc aggttatttc tctgtcgata aggtaaaaaa atcggataag
     2881 gtcaagtttg tggactacaa gtctgctacg gaaaagaaaa ataaccagtc taacgacaag
     2941 gatgcctatg atttgataat gaaggacaag gaacgtctgc tgtcttttga ggaacctgtt
     3001 cgctttatct tttctcactc agccctcaaa gaaggctggg acaatcctaa tgtcttccag
     3061 atttgtacct tgaaaaatac aggtacagaa acagaaaaac gacaaaagat tggtcgtggg
     3121 atgcgtctag ccgtcgacca aaaaggtgtt cgtcaggatg aggagctttt aggagctgat
     3181 gttcataata ttaacaagtt gaccgtcatc gccaatgaaa gttatgaaga ctttgccaag
     3241 aacttgcaaa gagaactcaa ggaaatcttg gctgaccgac caagcaaagt ggaagtggat
     3301 ctttttgtcg ataagatctt ggaaaatgaa gctggtcaaa aactgactgt caccaaggaa
     3361 gtggctaaag agattgaata ccagttgatt aagcaagatt atattgacag caaggggaat
     3421 ctgaccgcta tctattttga acaaaaagaa acaagtcagt ttactctatc tgaaaatctg
     3481 gcaggctatg aagtggctgt aaaagatatt ctagaaacga tttacgatgc caatcgttac
     3541 aagattgaac gtgaaaatga ttctgaagtg gtttttgcac gagaaatcaa ccctgataat
     3601 tacaatcgtc aagagtttaa acgtttgtgg gaaagtattc atcacaagtc cacctactat
     3661 gtcgaatttg atgatgagga gttgattgaa aagtctgtta aggccttgaa tgagtccttg
     3721 tttgttaaaa agcctagtta catgattaca gaggctgaag caagggaaat gcaggcgaaa
     3781 cacggtttgg atttcaaggt aaataagaac ggcaagcgtc agtctgtgct ggataagtct
     3841 tctattcaac tccgctatga tttgctgggt gaaattgcca gtcgcacgga gttgaaacgg
     3901 aaaacagtcg ccaatatttt gaagcagatt tcgccaagca agtttgatat gttttcctat
     3961 aaccctgagg catttatcca acaagttagt aggctcatca atgagcaaaa ggcgagtcag
     4021 gtgattgagc atatccgcta caatatccta gaggaaactt ttgatagttc tatttttacg
     4081 gacaatcctt tgagtggtaa ggtgtcagat gcaaatatgc tcaagtctga gaagggtgtt
     4141 tataattatg tgaaggttga ttctggaacg gagaggaagt tcaaagagga cttggagcga
     4201 ttcgacgatg tcatggtcta tgccaaattg cctagcaagt ttaagatttc cacaccgctg
     4261 ggtgattaca atccagactg ggccattgcc ttccgagatg gttcggtcaa gcatgtttac
     4321 ttcgtagctg aaaccaaagg ttccatgtct agtttgcaac tgaaaggggc ggagttggca
     4381 aagattgagt gtgcaaaggc ccacttcaaa gccctaaaag aaaaaggatt gattgcggat
     4441 gatcggattt atgatgtggt tgattcctat gaaaaattat tagaaatcgt gagaggatag
     4501 gttgctgagc aatccttctc gccactgaag gagaatattt atgggtgcgt ttttgttttt
     4561 tacatttgcg atttgttatc tggtgggcat tgttgccata gtcaaggctt ttgttgtccc
     4621 ctgaaagagg ctgggcaaaa actagccgct cataca
//
LOCUS       DASFRC010000173         4641 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.173, whole genome shotgun sequence.
ACCESSION   DASFRC010000173 DASFRC010000000
VERSION     DASFRC010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4641)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4641)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4641
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.173"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(1..1029)
                     /locus_tag="U1087_001951"
     CDS             complement(1..1029)
                     /locus_tag="U1087_001951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HEM4756388.1"
                     /translation="MQASSRSLRLMGTIIETKIWHPDAEPILDQVEELLYLYKDRFSA
                     NDLTSELMEVNLNAGVQAVPVADDLYELIKLGKEHSLAQGSFLNITIGPLVQSWRIGF
                     SDAKLPTQEMISEKLQLINPRDIELDDEEQTVYLKKEGMVIDLGALAKGYVADKIVDF
                     LKRIGVEAGLINLGGNVLTFGQAQHNPDGCWRIGIQDPQKTRGENALVLNIGEESVVT
                     SGIYERTLTVNGKTYHHILSPETGYPIESQLASLTIVSKQSVDGEIWTTRLFGQEITR
                     VYKMVEETDGIEAVLIGLDGRILVTSGLSEKVLAGKERISDSLGSPSRGGFGARVASD
                     LASGASVL"
     gene            complement(1016..1960)
                     /locus_tag="U1087_001952"
     CDS             complement(1016..1960)
                     /locus_tag="U1087_001952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional oligoribonuclease/PAP phosphatase
                     NrnA"
                     /protein_id="HEM4756389.1"
                     /translation="MTIYSTIIEKIREYDTIIIHRHQRPDPDAIGSQVGLQKLLQKNF
                     PEKTIKVTGFNEPNLSWMAEMDQVSDQDYQGALVIITDTANTARVDDDRYAQGDFLIK
                     IDHHPNEEPYGDLLWVNTEASSCSEMIAELGLQSQLELDGETARLLYAGIVGDTGRFL
                     YPATSSRTFEIVARLRQEDFDFARMSRQMDTIDFKIAKLTGYVYDNLEVDEYGAARVI
                     LTQDILKKYGVTDADTSFIVGAPGRIGTVQSWGIFVEQTDGNYRVRLRSKYIPINEIA
                     KRHDGGGHPLASGANSYSLSENEQIYQEIQEVVRNASK"
     gene            2056..2517
                     /locus_tag="U1087_001953"
     CDS             2056..2517
                     /locus_tag="U1087_001953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin"
                     /protein_id="HEM4756390.1"
                     /translation="MALAKIVYASMTGNTEEIADIVASKLEELGLEVQVHECTTIETD
                     EILDADLIVVASYTYSYGGDGELPDEIVDFYADLADLDLTGKVYGVCGSGDTFYDDFC
                     SAVDDFDVMLGSRGATKGAENVKVDLAAEDEDIVNLEQFATDLVAKLDIMN"
     gene            2659..2928
                     /gene="rpsN"
                     /locus_tag="U1087_001954"
     CDS             2659..2928
                     /gene="rpsN"
                     /locus_tag="U1087_001954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001085658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HEM4756391.1"
                     /translation="MAKKSKMARYQRQLELIERYAGLRKSLKEKGDYQALRKLPRDSN
                     PNRLKYRDRTDGRPHAYMRKFGVSRITFRELAHLGQLPGVKKASW"
     gene            3010..3288
                     /locus_tag="U1087_001955"
     CDS             3010..3288
                     /locus_tag="U1087_001955"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HEM4756392.1"
                     /translation="MNLDCIREQINTIDSQLVELLEKRMELVDQVTAYKRATGKPVLD
                     TSRENAVLERVGKLVQKDDYRSAIQATFSDIMAQSRTYQSSKLANHEQ"
     gene            3278..4492
                     /locus_tag="U1087_001956"
     CDS             3278..4492
                     /locus_tag="U1087_001956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HEM4756393.1"
                     /translation="MSNRMKQAIQLLFFSSLIGVGAGIITTLFGKILLGIGDLRSEYF
                     TYLILFLPLAGVVIVFIYQKWGRELQAGMGLVFKAGQGELVQISPVLIPLIISTTWLS
                     HLVGASVGREGVAVQLGASLSHWLQKHGFTHLPKDIITKIGMAAGFAGLFQTPLAASF
                     FAIEVLIVGQYSWSSLPYCLVAAFTASTTSHLLGLEKFSHTISSFSFQFTDSFKWLLI
                     AICFGVVGNLFAWFLAQAKSISTRWLPNPYIKIAIMGVGLTVLLFFFHQGRYTGLGTN
                     LIDASLAWEQVFAFDWLLKLLLTCLCLAAGFQGGEVTPLFAIGASSGAVLAGLLGLPT
                     ERVAALGYCAVFGTATNTLLAPLFISYEVFGANILPCAIPVLAIAYLINRKQTIYGQQ
                     LRKFNNAKKPII"
     gene            complement(4513..4584)
                     /locus_tag="U1087_001957"
     tRNA            complement(4513..4584)
                     /locus_tag="U1087_001957"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4549..4551),aa:Arg,seq:cct)
BASE COUNT         1267 a         1018 c          972 g         1384 t
ORIGIN      
        1 ttatagtacg gaagcacctg aagcaaggtc agaagctact ctggcgccaa atccccctct
       61 tgaaggactg cccaagctat cagaaattct ttctttacca gcaagaactt tctcagaaag
      121 ccctgaggtc actagaatcc tgccatccag cccaatcaga accgcttcga taccatcagt
      181 ttcttccacc atcttataaa cccgagttat ttcttgacca aacagtcgag tcgtccaaat
      241 ctcaccgtca acagattgtt tggacacaat ggtcaaacta gccagctgcg actcgattgg
      301 atagccggtc tcgggactca aaatatgatg ataggtcttt ccattcacgg taagggttct
      361 ttcgtaaatg ccagaggtga caactgactc ctctcctatg ttgagaacga gggcattttc
      421 accccgtgtt ttctgaggat cctgaatccc aattcgccag caaccatctg ggttatgctg
      481 agcctgaccg aaagttaaga cattgcctcc caggttaatc agtccagcct ccacacctat
      541 tcttttcaag aagtcgacaa tcttatctgc tacatatcct ttagcaagag cacccagatc
      601 aatgaccata ccttcttttt tcaaatagac tgtctgctcc tcatcatcta attcgatgtc
      661 ccttggattg atgagctgga gtttttcact gatcatttct tgggttggaa gtttggcatc
      721 gctaaaccca atccgccagc tttgcacaag gggaccaatg gtaatattca aaaaagatcc
      781 ctgagccaga ctgtgttctt tgcccaattt aatcaattca tacaggtcat cggcaacagg
      841 aaccgcctga acacctgcgt tgaggttgac ctccattaat tcagaggtca agtcattggc
      901 agaaaaccga tccttgtaga gataaagaag ctcttctacc tgatccaaaa tcggttctgc
      961 atctggatgc catattttag tttctatgat ggttcccatt agacgaaggg aacggctact
     1021 tgcttgcatt cctcacgacc tcttgaattt cttgatagat ttgctcattt tcggaaaggg
     1081 aataagagtt agcaccgctg gctagtgggt ggccaccgcc atcgtggcgc ttggcaatct
     1141 cgtttatcgg aatgtacttg ctgcgtaagc gaaccctgta atttccgtca gtttgttcca
     1201 caaaaatccc ccaagattgt acagtgccaa tccgtcctgg tgcacctacg ataaatgaag
     1261 tatccgcatc ggtcaccccg tattttttga gaatgtcctg tgtcaaaata acccgtgccg
     1321 caccgtactc atcgacttcc aagttgtcgt agacgtagcc tgtcagcttg gcaatcttaa
     1381 aatcaatggt atccatctgg cgagacatcc ttgcaaagtc aaaatcttcc tgacgaagtc
     1441 gggcaacaat ttcaaaagtg cgtgagctag tcgccggata aagaaaacgt cccgtatcgc
     1501 caacaatacc agcatatagc agtcgagcag tttccccatc caattccaac tggctttgaa
     1561 ggcccaattc tgcaatcatt tcactgcatg agctagcctc agtattgacc cagagcaagt
     1621 caccataagg ctcttcattg gggtgatgat cgattttaat caagaaatct ccttgagcat
     1681 agcggtcgtc atccacacgc gccgtattgg cagtgtccgt tatgataacc aaggcccctt
     1741 gataatcttg gtcggaaacc tgatccattt ctgccatcca ggaaagattc ggctcattga
     1801 aaccggtcac cttaatggtt ttttcaggaa aattcttctg caagagcttc tgtaagccaa
     1861 cctgactacc gatagcatct ggatctggtc gttggtgacg atgaatgata atagtgtcat
     1921 attcacgaat tttttcgata attgtactgt aaatagtcat agcaactcct ttttcatcat
     1981 tttagcataa acttcccctt ttgaaaatga tgggagtatg gtataataag attactatgt
     2041 aatttggagg aaattatggc actagcaaaa attgtttacg ctagtatgac tggtaacaca
     2101 gaagaaattg ctgatatcgt cgccagtaag ctagaagagt tgggtttgga agtacaggtt
     2161 catgaatgta ctactattga aacggatgaa atcttggatg ctgacttgat tgttgtagcc
     2221 agctacacct attcttatgg tggtgatggt gagcttcctg atgaaatcgt tgatttctat
     2281 gctgacctag ctgacttgga tttgactggt aaggtgtacg gtgtttgcgg ttctggtgat
     2341 accttctatg atgacttctg tagtgcagta gatgactttg atgtcatgtt gggttcacgt
     2401 ggtgcaacta agggtgccga aaatgttaag gtagaccttg ccgctgaaga tgaggatatt
     2461 gttaaccttg agcaattcgc gacagacctt gttgctaaac tagatataat gaattaactg
     2521 acaaacagac tggcttatca ataggtctag tctgttttct tttagccttt tattaagatt
     2581 gtacacctat tgcttgcaat cttaatagtt ttgatatata attaactgat taagtttttt
     2641 ggaaaaaagg agaattttat ggctaaaaaa tcaaaaatgg cacgctatca gagacagttg
     2701 gagttaatcg agcgctatgc gggtttacgt aaaagtctca aagaaaaagg tgactatcaa
     2761 gcacttcgaa aattgcctcg cgactcaaat ccaaatcgac tgaaataccg cgacaggacc
     2821 gatggccgtc cgcatgccta tatgcgaaaa ttcggtgtga gtcggattac cttccgtgaa
     2881 ttagcccatc ttggtcaact tcctggggta aaaaaagcaa gttggtaact tcctcaaaca
     2941 aggctagtat tctgccttgt tttttgctat actaaaaaac aaccgaaaca atatacggag
     3001 gtttttaaga tgaatttgga ttgcatccgc gaacagatta acacgattga tagccaattg
     3061 gttgaactac ttgaaaaacg aatggagttg gtcgaccaag ttacagccta taaacgagca
     3121 acaggtaagc ctgttttgga taccagccga gaaaatgctg tccttgaaag agttggaaaa
     3181 ttagttcaaa aggatgatta ccgttctgcc attcaagcaa cctttagcga tatcatggca
     3241 caatcaagaa cctatcaatc ttccaagtta gcgaatcatg agcaatagga tgaaacaagc
     3301 catccaactc cttttctttt ccagcttaat tggagtcggc gcaggaatta tcaccacact
     3361 ttttgggaaa attctactag ggattggaga cttacggtct gaatatttta catatctaat
     3421 cctctttctg ccacttgcag gggtggtgat tgttttcatt tatcaaaaat ggggaaggga
     3481 actccaagca ggtatgggct tagtattcaa agctggacaa ggagagctag tgcaaatttc
     3541 tccagttctc attccactca tcatctctac aacttggctc agtcatcttg tcggtgcttc
     3601 cgttggtcgc gaaggtgtag ctgtccaact tggagccagt ctctcacatt ggttacaaaa
     3661 acatggtttc acacacttgc ccaaagacat aataacaaag attggtatgg ccgcaggttt
     3721 tgcagggtta tttcaaacac cattggctgc tagtttcttt gccattgagg tattaatcgt
     3781 tggccaatat tcttggagta gtctccccta ttgtctagtt gccgctttca cggcttctac
     3841 tacttcccat ttattgggat tagagaaatt ttcgcacact atttcatctt tttcattcca
     3901 gtttacagat agttttaaat ggcttctgat tgccatctgc tttggagttg tcggtaattt
     3961 atttgcttgg tttctggcgc aagcaaaaag catctcgact cgatggcttc caaatcctta
     4021 cattaaaata gctatcatgg gagttggact gaccgttcta ctatttttct tccatcaagg
     4081 tcgttatact ggtctcggaa ccaatttgat cgatgccagt ttagcttggg aacaggtgtt
     4141 tgctttcgat tggctactaa aactcctact aacctgtctt tgtttggctg caggttttca
     4201 agggggcgaa gttactccgc tctttgcgat tggagcaagt tctggggctg ttttagcagg
     4261 attactaggt ctaccaactg aacgtgttgc agcccttggg tattgtgccg tatttggaac
     4321 agccaccaat accttactgg ctcctctctt cattagttat gaagtattcg gcgctaatat
     4381 cctgccctgt gccattcctg tacttgccat agcttatctt ataaacagaa aacagactat
     4441 ttatggacag cagttgagga aattcaataa tgcaaaaaag cctatcattt aggctttttc
     4501 gtatactctt catctcccct gcaggaatcg aacctgcaac taattcttag gaggaatttg
     4561 ttatatccat ttaactaagg gaagtctgct tctctattgt accccagaag agagcagatt
     4621 gcaagagcaa ggttatataa g
//
LOCUS       DASFRC010000174         4595 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.174, whole genome shotgun sequence.
ACCESSION   DASFRC010000174 DASFRC010000000
VERSION     DASFRC010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4595)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4595)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4595
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.174"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            16..1131
                     /locus_tag="U1087_001958"
     CDS             16..1131
                     /locus_tag="U1087_001958"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HEM4756394.1"
                     /translation="MCLLVGYKHFSLLRDGYIPLNTVLEKQSFKKTSAGQYEKKIGDL
                     SYSLLIDTDKNRVTKAGYQFDISNNIQHFLWMDYLSADKIEEIFNLQVSLNGIFVDVQ
                     NIEFSQHQWIEKFPNLIAHAGGTYREKSYNTFYTNSLEALQQNYSMGHRVFEMDFYLT
                     SDGKMAAVHDWDQFGYMNGVALSSDEWKNFQTFGSPVTDSRFTTMLIGDVLDQMLINK
                     DMFLVTDTKSFEVSEEEVIHQLTEIYNEAMKRSPELLSRIIPQIYNQTMYTTLKKVYD
                     FSNVIYTLYASPDSPEQVIEFVANNPSIKVVTIPLNHGGYFNSEFFNNLHALDKKIYT
                     HTIHTYDELTKYSALGIDGFYTGLLLPSDMERLSSLR"
     gene            1311..1799
                     /locus_tag="U1087_001959"
     CDS             1311..1799
                     /locus_tag="U1087_001959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EbsA family protein"
                     /protein_id="HEM4756395.1"
                     /translation="MIKIFGKIRYHWQPDLSWAIIYWSLTFTPIFIGMTLLLEKLRVS
                     RLFILLLSLFVVLVVLGLHRYFEIKEKHLRIASANPFAVQKIEIATIEKIEVSYLAIR
                     IFSQEFPNGQVYHMRKWPKKYFINHLAIHNCFKGEIELIDHLIKQDYFEEYYTKKAKS
                     IR"
     gene            complement(1788..1982)
                     /locus_tag="U1087_001960"
     CDS             complement(1788..1982)
                     /locus_tag="U1087_001960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin"
                     /protein_id="HEM4756396.1"
                     /translation="MKIKLIPERCIACGLCQTYSSIFDYDDDGIVVFSDDSQFEKTIE
                     PNPDILKAIKSCPTKAISAD"
     gene            2033..2509
                     /locus_tag="U1087_001961"
     CDS             2033..2509
                     /locus_tag="U1087_001961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEM4756397.1"
                     /translation="MSQEPWNEEVYQTETVSRKERLNKGVASTTVFTVLAIIFFVIVL
                     IIGIMAVYLSIGGGSKTDSTKEFYTPSTTTVVAESSSSAAETQESTSTDTTETETSSS
                     LAEATDGSTLTVQAGEGVGQLAARGGISIAELERLNPEKMTTGSWLAHPGDVVRIR"
     gene            2519..3196
                     /locus_tag="U1087_001962"
     CDS             2519..3196
                     /locus_tag="U1087_001962"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HEM4756398.1"
                     /translation="MKSIQIAIDGPASSGKSTVAKIIAKNFGYTYLDTGAMYRSATYL
                     ALTNGIEVTDQNRIVALLAQYPIRFGRDENGQQLVFVGDEDVTLPIRDNQVTNNVSAV
                     AALPLVREELVRLQQEIAQAGGIVMDGRDIGTVVLPQAELKIFLIASVEERAMRRFKE
                     NTERGIETDLEILKEEIAARDLKDSTREVSPLKAADDAITFDTTGVSIEGVVKFISEK
                     AKEILDK"
     misc_feature    3223..3351
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00558"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ribosomal protein L20 leader region; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00558"
     gene            3377..3898
                     /gene="infC"
                     /locus_tag="U1087_001963"
     CDS             3377..3898
                     /gene="infC"
                     /locus_tag="U1087_001963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000848185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HEM4756399.1"
                     /translation="MAKQDLFINDEIRVREVRLIGLEGEQLGIKPLNEAQAIADSANV
                     DLVLIQPQAKPPVAKIMDYGKFKFEYQKKQKEQRKKQSVVTVKEVRLSPVIDKGDFET
                     KLRHARKFLEKGNKVKVSIRFKGRMITHKEVGAKVLAEFAEATQDIAIIEQRAKMDGR
                     QMFMQLAPASDKK"
     gene            3925..4125
                     /gene="rpmI"
                     /locus_tag="U1087_001964"
     CDS             3925..4125
                     /gene="rpmI"
                     /locus_tag="U1087_001964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HEM4756400.1"
                     /translation="MPKQKTHRASAKRFKRTGSGGLKRFRAYTSHRFHGKTKKQRRHL
                     RKAGMVHAGDFKRIKSMLTGLK"
     gene            4169..4528
                     /gene="rplT"
                     /locus_tag="U1087_001965"
     CDS             4169..4528
                     /gene="rplT"
                     /locus_tag="U1087_001965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019786714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HEM4756401.1"
                     /translation="MARVKGGVVSRKRRKRILKLAKGYYGAKHLLFRTAKEQVMNSYY
                     YAYRDRRQKKRDFRKLWITRINAAARMNGLSYSQLMHGLKLAEIEVNRKMLADLAVND
                     AAAFTALADAAKAKLAK"
BASE COUNT         1492 a          791 c          936 g         1376 t
ORIGIN      
        1 aatgtatctt tattcatgtg tttactggtt ggctacaagc atttttcttt gttgcgagac
       61 ggttatattc cattgaatac ggttttagaa aaacaatcat ttaaaaaaac ttctgctggg
      121 cagtatgaga aaaaaatcgg tgatttatca tactccttgc tgattgatac agataaaaac
      181 agagtgacaa aagcaggtta tcaatttgat attagcaata atattcagca ttttttatgg
      241 atggactatc tgtcagcaga taagattgag gaaatattca atttgcaagt ctctcttaat
      301 ggaatttttg tggatgttca aaatattgaa ttttcacaac atcagtggat agaaaaattt
      361 ccaaatctta ttgctcatgc tggtggtact tatcgtgaaa agtcctacaa tactttttat
      421 acgaactctt tagaagcgtt acaacaaaac tattctatgg gtcaccgagt atttgaaatg
      481 gatttctatt taactagtga tgggaagatg gcagctgtcc acgattggga ccaattcggc
      541 tatatgaatg gtgtagcttt gagctcagat gaatggaaaa attttcaaac ttttggatca
      601 ccagtcactg attcacgttt tacaacgatg cttattggtg atgtgttaga tcaaatgctg
      661 attaataagg atatgttctt agtgacggat actaaatctt ttgaagtttc agaagaagag
      721 gtaatccatc agcttactga aatttataat gaagcaatga aacgaagccc tgaattacta
      781 agtcgtatta tcccacaaat ttacaatcaa acgatgtata ctaccctaaa aaaagtttat
      841 gatttctcga atgttatcta cacgctatat gcctcgcccg atagtccgga acaggttatt
      901 gaatttgtgg ctaataatcc atctattaaa gtggttacta ttcctttgaa tcatggtgga
      961 tattttaatt cagaattttt taataacctt catgctttag ataaaaaaat ctatacccat
     1021 accattcaca catatgatga attgacgaaa tactctgcgc ttggaattga tggtttttat
     1081 accggtctat tattaccaag tgatatggag agattatcga gtttgaggta atctttatta
     1141 ttactgatgg cactatttta atcatatcat caaaaaatat ttcaaaagca tttcagaagt
     1201 tttacaaaca aactaatatt gtcatgtaaa tgtaataaaa atttcaaaag atagaggttt
     1261 tcataggaaa atctctattt ttgtgctaga ataatagatg gaggtccgat atgatcaaaa
     1321 tttttggtaa aattcgttac cattggcaac cggatttatc atgggccatt atttactggt
     1381 cacttacctt cacgcctatt ttcattggta tgacactttt attggaaaag ttgagagttt
     1441 caagattatt tatcttactt ctctctctct ttgttgtatt agtagtgctt ggcttacatc
     1501 gctatttcga gataaaagaa aagcatttac ggattgcttc ggctaatcct tttgcagtac
     1561 agaaaattga aattgctacc atagaaaaaa ttgaagtttc ttatctagcc attcgcatat
     1621 tttcacaaga atttcccaat gggcaggtgt atcacatgcg caaatggccg aaaaaatact
     1681 ttattaacca tttagctatt cataattgct tcaagggtga gattgaatta atagaccatt
     1741 taataaaaca ggattatttt gaagagtatt atacaaaaaa agccaaatca atccgctgaa
     1801 atggcttttg taggacagga tttgatggct ttgagaatat ctggattggg ttcaatcgtt
     1861 ttctcaaatt gtgagtcgtc tgaaaaaaca acgataccgt cgtcatcata atcgaatata
     1921 gatgaataag tttggcagag cccgcaggca atgcaccgtt caggaataag ttttattttc
     1981 atattagtat tgtaatcata ttttaataaa aatacaagga gttttctcga taatgtcaca
     2041 agagccatgg aatgaagaag tttatcaaac agaaacagtt agtcgaaaag aacgtctaaa
     2101 caagggagta gcaagtacaa cagtatttac agtcttggca attattttct ttgttatcgt
     2161 actgattatt ggaattatgg ctgtctatct ctcaatcggt ggcggtagta aaacagattc
     2221 aacaaaagaa ttttataccc caagcactac aacagtcgta gcagagagct cttcatcggc
     2281 tgctgagaca caagaatcta cttcgactga cacgacagaa acagaaacaa gttccagtct
     2341 agcagaagct acggatggct ctacccttac tgttcaagca ggtgaaggtg ttggacaatt
     2401 agccgcacgt ggcgggattt caattgctga gttagagcga ttaaatccag agaaaatgac
     2461 cacagggtct tggcttgcgc atccaggtga tgtagtccgt attagataaa gaggggttat
     2521 gaaatcaatt caaattgcaa ttgacggtcc agcttcaagt ggaaagtcaa cggttgctaa
     2581 aattattgct aaaaattttg gttatactta cttagataca ggagctatgt atcgctcggc
     2641 tacctatcta gccttgacaa acggcataga ggtcacagat caaaatagaa tcgtggcctt
     2701 gcttgctcag tatcctattc gatttggtcg tgatgaaaat ggccagcaat tagtttttgt
     2761 gggtgatgaa gatgtcactt tgcctattcg tgataaccaa gttacaaata atgtatcagc
     2821 agtagcagca cttcctctag tacgggaaga attggtacgc ctgcaacagg aaattgccca
     2881 ggctggcggc attgttatgg atggtcgcga tattggaaca gttgttttac cacaggcaga
     2941 actcaaaata ttccttattg cctctgttga agagcgtgcc atgcgtcgtt ttaaggaaaa
     3001 tacggaacgt ggcatcgaga cagacttgga aatcttgaaa gaggagattg cagctcgtga
     3061 cctgaaagac agtactcggg aggtttcacc tttgaaagct gctgacgatg ccatcacatt
     3121 tgatacaaca ggtgtatcca tcgaaggtgt agtgaaattt atttcagaaa aagcgaaaga
     3181 aattcttgac aagtagtttt agacatgtta gaatagtcat attgagaaaa gcagaagtga
     3241 gagcttctcg ccttgcgact aacgttgtct ggctctacgg attaagattt cttcggaaag
     3301 aataatggtg tagtgcggac ttgtttagca agtccgtttc gtttttctcg aaaaatataa
     3361 aatgaggtga aaagccatag caaagcaaga tttgttcatc aatgatgaaa ttcgagtgcg
     3421 tgaagttcgt cttatcggtc ttgagggtga acagttggga atcaaaccgc tcaatgaggc
     3481 tcaggccatt gctgatagcg ccaacgtgga tttagtattg attcaaccac aagctaaacc
     3541 accagtagcg aaaattatgg actacggtaa gttcaaattt gaatatcaga agaaacagaa
     3601 agaacaacgc aaaaaacaaa gtgttgtcac tgtgaaagaa gtgcgtctaa gtccagttat
     3661 tgataaaggg gacttcgaga caaaacttcg tcatgcccgt aaattccttg aaaaaggaaa
     3721 taaggttaag gtttcgatcc gtttcaaggg tcgtatgatt acccacaaag aagttggagc
     3781 gaaagtatta gctgagttcg ctgaagcaac ccaagatatt gccattatcg aacaacgcgc
     3841 taagatggac ggacgtcaaa tgtttatgca attggcccca gcttcagata aaaaataagc
     3901 tttttaagca aaaggagaat taacatgcca aaacaaaaaa ctcaccgcgc atcagctaaa
     3961 cgtttcaaac gtacaggttc tggtggattg aaacgcttcc gcgcttatac ttcacaccgt
     4021 ttccacggta aaactaaaaa acaacgtcgt caccttcgta aagcaggtat ggtacatgct
     4081 ggtgacttca agcgtatcaa atcaatgctt acaggtttga aataagccga cttactagaa
     4141 tttagattat catttggagg aaaattaaat ggcacgtgtt aaaggtggcg ttgtttctcg
     4201 taaacgccgt aaacgtattt taaaattagc taaaggttac tacggagcta aacatctctt
     4261 gttccgcact gcgaaagaac aagtcatgaa ctcttactac tatgcatacc gtgaccgccg
     4321 tcagaaaaaa cgtgatttcc gtaaattgtg gatcactcgt atcaatgcgg ctgctcgtat
     4381 gaacggtttg tcatactcac aattgatgca cggtttgaaa ttggccgaaa tcgaagtaaa
     4441 ccgcaaaatg cttgctgact tggcagtgaa cgatgcagca gctttcacag ctcttgcaga
     4501 tgctgctaaa gcaaaacttg ctaaataagt ataaaaatgt aaagaacttg gtagtgatga
     4561 accaggttct ttatttttgg aaagtagctc actac
//
LOCUS       DASFRC010000175         4570 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.175, whole genome shotgun sequence.
ACCESSION   DASFRC010000175 DASFRC010000000
VERSION     DASFRC010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4570)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4570)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4570
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.175"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..1065)
                     /locus_tag="U1087_001966"
     CDS             complement(<1..1065)
                     /locus_tag="U1087_001966"
                     /EC_number="2.4.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018543466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine-nucleoside phosphorylase"
                     /protein_id="HEM4756402.1"
                     /translation="MRAVDLIQKKRDGLELSSEEIKWLIDGYVAGTVPDYQMSALAMA
                     IYFKGMSTREISDLTMSMVATGEQIDLSAIPGIKVDKHSTGGVGDKVTLILAPLVASF
                     DIPVAKMSGRGLGHTGGTLDKLESIKGYQIEVSQEDFIKQVQDTGVAVIGQSDNLVKA
                     DKLLYALRDVTATVDIIPLIASSVMSKKIAAGADAILLDVTVGEGAFMKTVEEARVLA
                     QTMVDLGKAVGRKTVAVLTDMSQPVGTSIGNRLEILEAIEILQGKGREDVTEFICELA
                     QIMLGLANVEKSIEEVRQYIDNGAALKKFEEMVLAQGGDLEDLYRPVQVTQQVPVLAE
                     EDGYLVGLPALEFGLFAMKLG"
     gene            complement(1062..1652)
                     /locus_tag="U1087_001967"
     CDS             complement(1062..1652)
                     /locus_tag="U1087_001967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM4756403.1"
                     /translation="MSNMYYEKNPTVAHDIHEIHVNLLDTPMSFITDAGVFSKKMVDY
                     GSQVLLKTLHFEKGASVLDVGCGYGPIGLTLAKVFSTKTTLIDINSRALDLATKNAER
                     NGVTAKIYQSNIYENVDETFNHIVSNPPIRAGKSVVHEVIAGAFQRLEANGTLTIVIQ
                     KKQGAPSAKAKMEEVFGNCQIIKKDKGYYILESVRE"
     gene            1761..2681
                     /locus_tag="U1087_001968"
     CDS             1761..2681
                     /locus_tag="U1087_001968"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009568566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pantothenate kinase"
                     /protein_id="HEM4756404.1"
                     /translation="MKNEFLNFEQIDRATWQQLHRKTTIPLSQSELNSIKSFNDRIQL
                     HEVSDIYLPLVNLIHIYRKARKDLNFTKSLFLQKTIKPQPFIIGVSGSVAVGKSTTSR
                     LLQILIARTFKHAKVELVTTDGFLHPNAVLEERQLLNKKGFPESYDMEKLIDFLDKIK
                     NGYDCQIPVYSHEIYDIVPNKTQDIKSPDFLIVEGINVFQNPQNQRLYVSDYFDLSIY
                     VDADVEHIETWYLERFQKLLTLAKNDPNNYYHRFTQMTYPEILSIAQNTWKNINLANL
                     EKFIEPTRNRADIILHKAENHEIDKIYLKK"
     gene            2740..2988
                     /locus_tag="U1087_001969"
     CDS             2740..2988
                     /locus_tag="U1087_001969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018368578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HEM4756405.1"
                     /translation="MEVKPLANIKSAIKRAELNVKQNEKNSAQKSAMRTAIKAFEANP
                     SEELFRAASSAIDKAETKGLIHKNKASRDKARLASKLA"
     gene            complement(3250..4479)
                     /locus_tag="U1087_001970"
     CDS             complement(3250..4479)
                     /locus_tag="U1087_001970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase"
                     /protein_id="HEM4756406.1"
                     /translation="MRKVSRSILTILLSATVLSACSGGGKNLSERLEAAKVEFSKEKK
                     QLEAELTALKEEVQGNFYYQQLDTDKERHVYLQFVNGLSKRMQVIDIDSVNDEIYSRV
                     YFSVAHDYPEFYWLTDEAAMAGGIDILDLEEPVYPSDLSPTQNKIEDEVNKILAQTPK
                     GSDYEKVKYFYEVIIRQTDYDLEALQTKSVTWRSQGITSVLLDKKSVCAGYSRTFQYL
                     CKKAGIDCIYVTGIAKNGQNGEFGHAWNLVKINGQHYGVDTTWGDPVFDQAISGEAHT
                     DISYDYLCVPDEILERSRIADSDLLDYWGEEQYYEPRVLVYPKCTDNSLNYYVQKGVY
                     FTSFDEAAVLQSITDQRLQGTNKVVLQFGTAEAMQQMITLASTENNAIFQALGDVGEY
                     QYYYNDQTYTFELADWF"
BASE COUNT         1396 a         1011 c          755 g         1408 t
ORIGIN      
        1 accaagtttc attgcaaaga gaccgaattc caacgcagga agccctacaa ggtatccatc
       61 ctcctccgca agaactggaa cttgctgtgt aacctgaact ggacgatata aatcttctaa
      121 gtcaccacct tgagcaagga ccatctcttc aaatttcttc aacgctgcac cattgtcaat
      181 atattggcgt acttcttcaa tgcttttctc aacatttgca agccccaaca taatttgggc
      241 tagttcacag ataaattcgg taacatcttc tcgaccttta ccctgtaaaa tttcaatagc
      301 ctctaaaatt tccaaacgat ttccaatcga agttccaact ggttgagaca tgtcagtcaa
      361 aactgcaact gtcttacgcc caaccgcctt gccaaggtcc accatggttt gagctagaac
      421 ccgtgcttct tcaacggtct tcatgaaggc gccttctccc actgttacat ctagaagaat
      481 cgcatccgca cctgcggcaa ttttcttaga cattaccgag ctggcaatca gtggaataat
      541 gtcaacggtt gctgtcacat ctcgaagggc atagagcaat ttatcagctt tgacaagatt
      601 atctgactgt ccgataactg caacaccagt atcttgaact tgcttgatga aatcttcttg
      661 actaacttca atctggtatc ctttgattga ctctaactta tccaaggttc cgccagtatg
      721 accaagtcca cgaccgctca tctttgcaac tggaatatca aaacttgcta ccaatggcgc
      781 taagatgagt gtgaccttat ctccgacacc acctgtagaa tgcttatcta ccttgatgcc
      841 tggaattgca gacaaatcaa tctgttcacc cgttgcaacc atagacattg tcaaatcaga
      901 aatctcacgt gttgacatcc ctttgaaata aatcgccatc gccaaggctg acatttgata
      961 atccggtact gtcccagcta catatccatc aatcaaccat ttgatttctt cagacgatag
     1021 ttctaagcca tcacgctttt tttgaattaa atcaactgct ctcattctct cacactttca
     1081 aggatgtagt aacccttgtc tttctttatt atctggcagt tgccgaacac ctcttccatc
     1141 ttagccttgg cactcggtgc accttgtttc ttttgaatga caatggtcaa ggttccgttt
     1201 gcctctaagc gttgaaaggc tccagcaatt acttcatgta caaccgattt tccggcccga
     1261 ataggtggat ttgaaacaat atgattgaat gtttcgtcca cgttttcgta gatattggat
     1321 tgataaattt tagcggtaac accattcctc tcagcatttt ttgtagctaa atccaaagct
     1381 ctactattaa tatcaatcag tgttgtcttg gtgctgaaca ccttagcaag tgtcaaacca
     1441 attggtccat aaccacaacc aacatccaac accgatgccc ctttttcaaa atgaagggtt
     1501 tttaaaagca cttgactacc ataatcaacc atcttcttgc taaaaacacc tgcatctgtt
     1561 atgaaagaca ttggggtgtc tagtaagttt acgtggattt catgaatatc atgtgctact
     1621 gtaggatttt tttcgtaata catattggac atgtacttat tataacattt cctaaaaacg
     1681 ttttcaagag tttttcttac atgaaaaata tgataaaatg aaatcgatat tgaaacgctt
     1741 acctatagga agaattatgt atgaaaaacg aatttttaaa ttttgaacaa attgaccgag
     1801 ccacttggca acaactacac cgtaagacta ccattccact tagtcaaagt gaactaaatt
     1861 ctattaaaag ttttaacgac cgcattcaat tacatgaggt ttctgacatc tatcttcctt
     1921 tggttaatct tatccatatc tatcggaaag cacgcaaaga cctaaatttt acgaagagtt
     1981 tatttctaca aaagactatc aagccacaac catttatcat tggcgtttcc ggaagtgttg
     2041 ctgtcggcaa atcaacaact agtagattgc tgcaaattct tatcgctcgg acatttaaac
     2101 acgccaaggt tgaattagtg acaacagatg gttttctcca tccaaatgcg gtcttagaag
     2161 aacggcaact gttaaataaa aaaggttttc ctgaatccta tgacatggag aaattgattg
     2221 atttccttga taagataaaa aacggctacg actgccaaat tcctgtctat tcacatgaaa
     2281 tctatgatat tgtccccaac aaaactcagg atattaagtc tccagatttc ttgattgttg
     2341 aaggaattaa tgtatttcaa aatccacaaa accagcgcct ctatgtcagt gactattttg
     2401 acctgtctat atacgttgac gctgatgtgg agcatattga aacctggtac ttggagcgat
     2461 tccaaaaatt attgacattg gcaaaaaatg accctaacaa ctattaccat cgttttaccc
     2521 agatgacgta ccctgagatt ctatctattg cccagaatac ttggaaaaat attaatctag
     2581 ctaacttaga aaaattcatt gaaccaacca gaaaccgtgc tgatattatt cttcataagg
     2641 ccgaaaacca tgagattgat aaaatttatc taaaaaaata aatttcactt gtcaaaaata
     2701 ctcttttcag atataatggt atagttagta caagaaaggg tggaggtgaa accattggca
     2761 aacattaagt cagctatcaa acgcgctgaa ttgaacgtta aacaaaacga gaaaaactca
     2821 gcacaaaaat cagctatgcg tactgcaatc aaagcatttg aagctaaccc atctgaagag
     2881 cttttccgtg ctgctagttc agcaatcgat aaagcagaaa ctaaaggttt gattcacaaa
     2941 aacaaagcaa gccgcgataa agcacgtctt gcatcaaaac ttgcttaatt aaaaaagaaa
     3001 cctttgggtt tccttttttt attttttcca tcataaggag gcgggacaaa gtggatcagt
     3061 tttcccgcga tgactaacat cattaactcg tcaaccacaa agccctcact atgattatac
     3121 acctagtgag ggctttgtgg ttgttttcat tattctgtgg gtgagggcgg agccaccatg
     3181 gatgtctttc ccgctcccta ttttttatta ttagggaaga acacgctcct agagattcaa
     3241 actaattcct taaaaccaat ctgccagttc aaatgtatag gtttggtcat tataatagta
     3301 ctgatactct cctacatcgc ccaaagcctg aaaaatagca ttattttcag tagaggccaa
     3361 tgtaatcatt tgttgcattg cttctgctgt tccgaattgc aagactactt tattcgtacc
     3421 ttgtagccgc tggtcagtga tggactgtaa aactgcagct tcatcaaagc ttgtgaaata
     3481 aactcccttt tgaacatagt aattcaatga attatctgta cactttggat agaccaatac
     3541 tctaggttcg taatattgtt cttctcccca gtagtcgagt aggtcgctat cagcaattct
     3601 acttctctct aatatttcat cagggacaca tagataatcg tatgaaatat ctgtatgcgc
     3661 ttctccactt atagcttgat caaaaactgg atctccccaa gtcgtatcaa caccatagtg
     3721 ttgtccattt atcttgacta gattccaagc atgcccaaac tcaccgtttt gcccattttt
     3781 tgcaatccct gtgacataga tacaatcaat gcctgctttt ttacatagat attggaaggt
     3841 gcgactatag ccagcacaaa cggatttctt atctaatagc acactggtaa ttccttgact
     3901 tctccacgtg acagatttgg tctgcagggc ttcaaggtcg taatccgttt gccttataat
     3961 cacctcgtaa aaatatttaa ccttctcata gtccgaccct tttggtgtct gagcaagtat
     4021 cttattcact tcatcttcta ttttattttg tgtcggagat aaatcactcg gatacaccgg
     4081 ctcttctaaa tccaatatat caattccacc agccattgct gcttcatctg ttagccagta
     4141 aaattctgga taatcatggg cgacagaaaa atatacgcgc gaatatattt catcattaac
     4201 agaatcaata tcgatcactt gcatccgctt gctgagtcca ttaacaaatt ggagatagac
     4261 atgacgttcc ttatcagtat ccaattgttg gtagtaaaaa tttccttgaa cctcttcttt
     4321 taatgctgtt aattctgctt ctagttgctt tttttcttta gaaaattcaa ctttagccgc
     4381 ttccaaacgt tcacttaaat ttttccctcc tcctgaacaa gcagaaagga ctgtcgccga
     4441 taataatatt gttaaaatgc tacgagaaac tttcctcata tttacctcca ttcttgttta
     4501 agtataacat aattaggagg catctgacaa actacacaaa acaaaaaggg agtggaaaga
     4561 attcaataga
//
LOCUS       DASFRC010000176         4476 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.176, whole genome shotgun sequence.
ACCESSION   DASFRC010000176 DASFRC010000000
VERSION     DASFRC010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4476)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4476)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4476
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.176"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..905
                     /locus_tag="U1087_001971"
     CDS             <1..905
                     /locus_tag="U1087_001971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HEM4756407.1"
                     /translation="SPEEVQEQLASSNRVLMNYPTDNLEFFGRAIDEVKDRKELIALR
                     KSLETIRQYYNMARLHGYHDIVKQVNMGEIASLLNMLSRRLLTLSLLEKPDSFSSQQL
                     LNLAMSETSFSFTKIKEEELRLAANDLDDIRRRVANGINLRRDEKDPEWVSLYEELQR
                     ILNKHMTQEVEGYSLSTIKETKKAYQSLFDSVEDYKTRMNRLAMNFGGDNMSARAFKH
                     ITQSTVVSDFPAIYQVLKGTKPLIDYQIGLNQGILENEAYLVAQIRQLAREEMMKTEV
                     GKQLKRVDYDKLIRSLMEVYEGEY"
     gene            910..2526
                     /locus_tag="U1087_001972"
     CDS             910..2526
                     /locus_tag="U1087_001972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002914305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
                     /protein_id="HEM4756408.1"
                     /translation="MEEHYIVQVQSQVQGLFDDLKAVFTHAGLGGEAGEYKLLTQSFL
                     YKFLNDKFLYEALIVDNRYDYQGLLDLSEEDYNWFLDDIGTKTAHLKPEQLIESLHRQ
                     QNQADFAEIFEQILNQIAIDNNAIFSVHTDGGTDIRLFDQRLITDTISDASKRNEVAA
                     SIINLLARVKFDQQIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYTPHSVAKIIAAI
                     LVGNDQPSNVKIYDPSAGSGTLLMNLASQIGTDRTSVYSQDISQKSSNLLRLNLILNG
                     LQHSIHNIVQGNTILNNRHAEKMDYIVSNPPFKLDFSEWRDQVESLPNSSERFFAGVP
                     KIPNKKKESMAIYQLFIQHIIHSLKEDGQAAIVLPTGFITAQSGIDKKIRQHLVDEKM
                     LAGVVSMPSNIFATTGTNVSILFIDKKNKDDVVLIDASNLGTKVKEGKNQKPVLSPDE
                     ENQIIQTFINKEVVEDFSVKVSYEEIKDKNYSLSAGQYFDIKIDYVDISPEEFEEKMQ
                     GYQDRLASLFAQSHELEKEIAEQLRRVRYE"
     gene            2519..3295
                     /locus_tag="U1087_001973"
     CDS             2519..3295
                     /locus_tag="U1087_001973"
                     /inference="COORDINATES: protein motif:HMM:NF013579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEM4756409.1"
                     /translation="MSEWKKYKLSEIYTMSSGISSSKSQAGQGSPFLSFSTVFNNYFI
                     PENLKDLMLTTKEEQERFSIIEGDVFLTRTSETLDELALSSVALNNYPFATYSGFLKR
                     LRPKNKIKVYPKFIAFYLRSSYFRKTIINHTNMTLRASFNESMFSYLEVYLPDYDEQV
                     RIGDFLYKLNQKITLNNQINEELEAMAKTLYDYWFVQFDFPDENGKPYKSSGGKMVYN
                     DQLKREIPEGWGVSSWGRYVNLEMESTMKNLRQGTRFQKL"
     gene            3558..3782
                     /locus_tag="U1087_001974"
     CDS             3558..3782
                     /locus_tag="U1087_001974"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756410.1"
                     /translation="MSNQSAGTIMKNISQTTLSEICIAIANKEIQKMFSKQVRSLLDV
                     IENNIKQNQELTQLRDWLLPMLMNGQVRVE"
     gene            3803..>4476
                     /locus_tag="U1087_001975"
     CDS             3803..>4476
                     /locus_tag="U1087_001975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756411.1"
                     /translation="MKEKLIEGVKNLVDKVNQISVISYTSNDSVIFESLKSNFNQICS
                     NFMYEIEGSNIDFFYNDEQINVYFEGVYNEINSSLQYSLEHLNSYNFPYSVGDLVTFK
                     SIIDQASSIFENIRYTLLKYENIPLLNELISESQTVILVGKNGVGKSTLIDDLKNDKF
                     HNLFCIPAQKYLYVTDLSNARVDNIDGIHQLFTNSPLKVKTTFSYIGADGDPYKIFSL
                     ILNFVMR"
BASE COUNT         1486 a          798 c          889 g         1303 t
ORIGIN      
        1 tgtccccaga agaagtccag gaacagctag cgagctctaa ccgagttcta atgaactatc
       61 cgacagataa cttagaattt ttcggaagag ccatcgatga agtcaaggat aggaaagagt
      121 taatcgccct ccgaaaatct cttgaaacca ttcgtcagta ctacaacatg gcacgtttgc
      181 atggctacca cgatattgtc aaacaggtca atatgggaga aattgctagc cttttaaata
      241 tgctgtcccg ccgcctcttg actttgagct tgttagaaaa accagatagt ttttccagtc
      301 agcaactatt gaatctagcc atgtctgaga ctagctttag ttttaccaag ataaaggaag
      361 aggaactacg actggcagcc aatgatttgg acgatatccg acgccgtgtg gccaatggta
      421 tcaatttgcg gagggatgaa aaagatccag aatgggtaag tctttatgaa gagcttcaac
      481 gcatcctaaa caagcacatg acacaggaag tagaaggata tagtctctca accattaaag
      541 aaaccaaaaa agcctatcaa agtttattcg attcagtaga agactataaa acaagaatga
      601 atcgcttggc catgaacttt ggtggagata acatgtctgc ccgtgccttt aagcacatta
      661 cccaatcaac agttgtcagt gacttcccag ctatttatca ggttctaaaa ggcaccaaac
      721 ctctgattga ttatcaaatc ggtcttaatc aaggcattct ggaaaacgaa gcctatttgg
      781 tagcgcagat caggcaactg gcccgtgaag aaatgatgaa aacagaagta gggaagcaac
      841 tcaaacgagt cgattatgat aagttgattc gttccctaat ggaagtctat gaaggagaat
      901 attaaacaaa tggaagaaca ttatatcgtg caggtgcaga gtcaagtcca aggcttgttt
      961 gatgacctaa aagccgtctt tacccatgca ggactcggag gagaagcggg ggagtacaaa
     1021 cttctgaccc agtccttcct ttacaagttc ttaaatgaca agtttttgta tgaggccttg
     1081 attgttgaca atcgctatga ctatcaaggt cttttggact tgtctgaaga agattataac
     1141 tggtttttag atgatattgg gactaaaact gctcatctaa aacctgaaca attgattgaa
     1201 agcttacacc gtcaacagaa ccaagcagat tttgctgaga tctttgaaca gattctcaat
     1261 cagattgcta ttgacaacaa tgctattttc tctgtccata cggatggtgg aacagatatt
     1321 cgcctctttg atcaacgctt gattacggat acgatttcag atgccagcaa gcgaaatgaa
     1381 gtggcagctt ctattatcaa tctcttggcg cgtgttaagt ttgaccagca gattttttca
     1441 cagggctttg actttttctc caccttgttt gagtacatga ttaaggacta taacaaagac
     1501 ggtgggggaa agtatgcgga atactacaca cctcactctg ttgccaaaat catcgcggcc
     1561 attttggtgg gaaatgatca accaagtaat gtcaaaatct atgatccttc tgctggttcg
     1621 gggactctct tgatgaacct ggccagtcag attggaactg accgtaccag tgtgtatagt
     1681 caggatattt cacaaaagtc ttcaaatctc ttgcgactca acttgattct caatggcttg
     1741 cagcattcca ttcacaatat tgtacaggga aatactattc tcaacaatcg tcatgcggag
     1801 aagatggatt atatcgtgtc caatcctccg ttcaaactag atttttctga gtggcgagat
     1861 caggtagaaa gcctgccaaa tagcagtgaa cgattttttg ctggtgtgcc aaagattccc
     1921 aacaagaaaa aagagagtat ggccatctac caactcttta tccagcatat catccatagt
     1981 cttaaggaag acgggcaggc agctattgtc ttgccgacag gatttatcac tgctcagtca
     2041 ggtattgaca agaaaatccg tcagcacctg gtcgatgaga agatgttggc aggggttgtg
     2101 tccatgccgt ccaatatctt tgcgacgaca ggaaccaacg tgtccattct ctttatcgat
     2161 aagaagaata aggacgatgt ggtcttgatt gacgcttcta atcttgggac caaggtcaag
     2221 gaaggcaaga accaaaagcc tgtccttagc cctgatgaag agaaccaaat catccaaacc
     2281 tttattaaca aagaggttgt tgaagacttc tctgtcaagg ttagctatga ggagattaag
     2341 gataagaact actccctcag tgcaggtcag tactttgaca tcaagattga ctacgttgat
     2401 attagcccag aagaatttga agaaaaaatg caaggctacc aagaccgctt agccagcctc
     2461 tttgctcaat cacatgagtt ggaaaaggaa atagcagagc agctgaggag ggtgaggtat
     2521 gagtgagtgg aaaaaatata aattatcaga aatatacaca atgagttcgg gaatttcctc
     2581 gtcaaaatct caagctggcc aaggttcacc atttctttca ttctcaactg tatttaataa
     2641 ttactttatt ccagagaatt taaaagattt aatgttaact acaaaagagg aacaagaaag
     2701 attttcaata attgaaggag atgtttttct aactagaacg agtgaaactt tagatgagct
     2761 agccttatca tccgtagctc ttaataatta tccatttgct acatatagtg gatttttaaa
     2821 aagattaaga cccaaaaata agattaaagt atatccgaaa tttattgcat tctatctacg
     2881 aagttcttat tttaggaaaa cgatcataaa tcatacaaat atgactttaa gagcgagttt
     2941 caatgagtca atgttttcat atttagaagt ctatctacct gattatgatg aacaagttag
     3001 aattggtgat ttcctttata aacttaacca aaaaatcact ctgaacaacc aaatcaacga
     3061 agagttggag gctatggcca aaacccttta tgattattgg tttgtgcagt ttgatttccc
     3121 tgatgaaaat ggcaagccct ataagtcctc cggtggtaaa atggtctata acgaccaact
     3181 caaacgagaa atcccagaag ggtggggagt aagcagttgg gggagatatg tgaatttaga
     3241 aatggaatca actatgaaaa atctgagaca ggggacacgc tttcaaaaat tgtaaacgta
     3301 cggaacattt caaattctag tacttttgtt actacttatg atttggactc aattacttta
     3361 gatagaagac gtattgaaag ttaccttgtt acagatagaa caattctgat aactcgcagt
     3421 ggaattcctg gggcgactag gatagtctct gatattccag ctaacacaat ttattcaggt
     3481 tttattattg gcgcaactgt tgccaatttg aatctatttt attatgtatt ttatcatcta
     3541 agaatattga aatgctaatg tctaatcaat ctgctggaac tataatgaaa aatatttctc
     3601 aaactacact ttcagaaatt tgcattgcga tcgctaataa agaaattcag aagatgtttt
     3661 caaagcaagt cagaagtctt ttagatgtaa ttgaaaataa tataaaacaa aaccaagaac
     3721 tgacccaact tcgtgattgg ctcttgccaa tgctgatgaa tggacaggtg agggtggaat
     3781 gatatttaag atggaggaat agatgaaaga gaagttgatt gaaggagtaa agaatttagt
     3841 tgataaggtt aatcaaatta gcgtcatttc gtatacatca aatgattctg taatattcga
     3901 aagtttaaaa agtaatttta atcaaatatg ttctaatttt atgtatgaaa ttgaaggtag
     3961 caatattgat ttcttttata atgatgaaca aataaacgtt tactttgaag gagtttataa
     4021 tgaaattaat tcatctcttc aatattcact tgaacatttg aatagttaca acttccctta
     4081 ctccgtaggt gatttagtta catttaagtc gataatagat caagcgagca gtattttcga
     4141 gaatattcga tatacattat tgaaatatga aaacatacct ttgctcaacg aactaattag
     4201 cgaatcacaa accgttatat tggttgggaa gaatggagtt ggaaaatcaa cacttattga
     4261 tgatttaaaa aacgataaat ttcataacct tttttgtatt cctgctcaaa aataccttta
     4321 tgttacagat ttgtccaatg cgagagtaga taacattgat gggattcatc aattatttac
     4381 taacagcccc ctaaaagtaa aaacaacttt ttcctacatc ggagcagatg gagatcccta
     4441 taaaatcttt agtttaattc tcaattttgt catgcg
//
LOCUS       DASFRC010000177         4394 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.177, whole genome shotgun sequence.
ACCESSION   DASFRC010000177 DASFRC010000000
VERSION     DASFRC010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4394)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4394)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4394
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.177"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(46..885)
                     /locus_tag="U1087_001976"
     CDS             complement(46..885)
                     /locus_tag="U1087_001976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM4756412.1"
                     /translation="MIKLIATDMDGTFLDGEGSFDRQRFAAILAQLAERKIPFVIASG
                     NGIERLRQLCEGFEEDLIFVADNGTHIYQGGETRLRRGLTQQESGMVLSYFKGQWATI
                     CLMLGNDHHIYMQEGAGVPFEGTGLPIKPEQMKAFQDRVVQLEDLAAYPTDQPIFKAG
                     FWVPEEQVDELVGGFNRQYAGQLMAVTSGYGSVDILPAGIHKAWGLEQVLQDLGIQAE
                     QVMAFGDSDNDLELLAYAGHSYAMENATDKVKAVAKYRAPSHLEAGVMQVLENWLSET
                     KGE"
     gene            complement(1275..2849)
                     /locus_tag="U1087_001977"
     CDS             complement(1275..2849)
                     /locus_tag="U1087_001977"
                     /inference="COORDINATES: protein motif:HMM:NF012235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4756413.1"
                     /translation="MNKKRTISFFRQLIKSIGITQVCIYVGIIVILFLLIGIQPFLIS
                     ELFSFTKSTIDYTYLFLLLLSFLSVSFVAFPKNYMLQKVRKVSKSIVFKDISDKSYSK
                     FVDMNLGEVQNLASEISYSARSLQYESISFILNVILIISLYAFSLITYDIFIGGVYIL
                     FCSLYLWLSIVFSKDNVRLIQDALDSTSETNSFFVDYFQNVEVIISTFRQFFETKKYD
                     TILSKEQKTYFNLQKRIDSHQLLLQLILSVMTVVMIVLVLNKSSDGSMAYILVLVYSS
                     IHMNGFGKQFLSVLESLDRLDLALDKIDFGRVNKVSISYENTDTDSLISLKNVQFSHG
                     DKKIFDNLTFSIRRGKFILIRGKNGTGKSTLLKLIKGMITPDSGSVTHYLSSEQIGYL
                     SQKMTLFDRTLKENMIYPLDKVDDALLMNLIAELKMTTLIQDVHGWSERKPGDFGDKL
                     SGGEKQKILIARGIINQYEVLLLDEIDSALDLEMQTQLMTILKKYYQNKTVVMVSHRK
                     IEESFFDDIIDIETIN"
     gene            complement(2846..>4394)
                     /locus_tag="U1087_001978"
     CDS             complement(2846..>4394)
                     /locus_tag="U1087_001978"
                     /inference="COORDINATES: protein motif:HMM:NF024753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEM4756414.1"
                     /translation="ENPQDGYVVFYSEVKQEYGIIKFNIFTGEVLWTQSVVNGGYGTP
                     LVYKNLVIVLKEFDSIAAFSKEDGKFIWEYRGCGRVRSSLNIIDDKIVFSSSNIIYFI
                     TEDGKLDFKIEKENSFFFGTISLFNGYLLTMYTKNDALTQTSHIVIGGLNLDGGALFE
                     VDLGESYIISADTSGFFLSDDSIFVSCGEIVFNINANSGSILWEQRISGIAGRHLPVV
                     DSNNVYTTTLSGNIYCINKKSGEIDWIIETKEGSIVAPPSIFRKTLLVLADCSMYFID
                     KVTGRIYDRKVIGHSPYSAITIQSNCIIVGGGEPPAHGLLQGYQVSADYPDELLINHF
                     EIGDIVENNELQVLIKVDSDDIENIKMFPAVISQKEILIGDRIGESKIFSFLVPLKNN
                     NVKGMYCVPLKVTFKSGLEKIEPIIIGLSSNNLLPSSFKLNHLYRNIQQSDYYNSGAA
                     IAEFLFSIYGKDMKQDEFRKIIDYIKERSKWKDADFQTWRLVLKRALSSPATTLEEFI
                     INEEGIE"
BASE COUNT         1437 a          924 c          576 g         1457 t
ORIGIN      
        1 ttttatacta gagcatgagg atatataaaa atactcaagg attttttact ctcccttggt
       61 ttccgacaac caattttcca agacctgcat gacccctgcc tccagatggc tgggagctcg
      121 gtacttggct actgccttga ccttgtctgt cgcattttcc atggcatagg aatgcccagc
      181 ataggctaag agttccaaat cattgtccga atctccaaaa gccatgacct gctctgcctg
      241 tattcccaag tcctgtaaga cctgctccag gccccaggcc ttgtggatcc ccgccggcaa
      301 aatgtccacc gagccatagc cactggtcac tgccatcagc tgacctgcgt actggcggtt
      361 aaagccccca accagctcgt ccacctgctc ttctggcacc cagaagcccg ccttaaagat
      421 aggctggtct gtcggatagg ccgccaagtc ctccagctga accaccctat cctggaaggc
      481 cttcatctgc tcgggcttaa taggaaggcc cgtcccttca aagggaacac ccgccccctc
      541 ctgcatatag atatgatggt cattgcccag catgagacag atggtcgccc actgtccctt
      601 gaaataggat aataccatgc ccgactcctg ctgggtcagg cctcgcctca aacgtgtctc
      661 tcccccttga tagatatggg taccattatc cgcgacaaat atcaggtctt cctcaaagcc
      721 ctcacagagt tgcctcaacc gctcaatccc attgccactc gcgatgacaa agggaatctt
      781 ccgctcagcc agctgggcca aaatagccgc aaaccgctgc cgatcaaagc tcccttctcc
      841 gtccaaaaac gtcccatcca tatctgtcgc aatcaacttt atcatacaat ctaacctttc
      901 cctttcaagg gggtgcaaaa accatgtagg gtgtgcatct taaatcctag tataatttct
      961 tttattacac cacacagtta gcatgaaaca taatccccaa aaattaagag aggcttttta
     1021 atgctaccga agaatgtaaa gtgtattttt tcgacatttc ttaatatctt tagttatcaa
     1081 taaatttttt agttcatcca aagttactcc gtggtctata tcactacccc aataaaatct
     1141 aactattctt ttgggacata cctgtgagta ttgagaatta acttcaccaa tgcaatcgaa
     1201 taattttatt accactatga ataatcttat agtcactaaa aaattgactc gaacaactaa
     1261 tgtttattct aatttcaatt aatcgtttca atatcaatta tatcatcaaa gaacgactct
     1321 tctattttcc tatgacttac cataacgacg gttttatttt ggtaatattt ttttaaaata
     1381 gtcattaatt gagtctgcat ttctaaatct aaagcagaat ctatttcatc caataataaa
     1441 acttcatatt gattgattat acctctggca atcaatatct tttgcttttc cccacctgac
     1501 aacttatccc caaaatcacc tggttttctt tcagaccatc catgtacatc ttgaataaga
     1561 gttgtcattt ttaattctgc gattaggttc attaacaagg catcatcaac cttatccaaa
     1621 gggtatatca tgttctcttt caaagtacga tcaaataaag tcatcttttg tgataaatac
     1681 cctatttgtt ctgaagataa ataatgcgta acgcttccag aatcaggagt aatcatccct
     1741 tttattaact ttaataaagt tgactttccc gttccatttt ttcctctaat taaaataaat
     1801 tttcctcttc gaatgctgaa tgttaaatta tcaaaaattt tcttatcacc atgggaaaat
     1861 tgaacatttt ttaaagaaat caaactatct gtatctgtat tctcatatga tatagatacc
     1921 ttatttactc taccaaaatc aattttatct aaagctaaat ctaatcgatc tagggattct
     1981 aaaacagata aaaattgttt gccaaatccg ttcatatgaa tagatgagta aactaagact
     2041 aggatataag ccatactacc atcactactt ttatttaata ctaatacaat catgacaaca
     2101 gtcataactg atagaattaa ctgtaacaat aactgatgac tatctatcct tttttgtaga
     2161 ttaaaatatg ttttttgctc tttgcttaaa attgtatcgt atttcttagt ttcaaaaaat
     2221 tgtctaaatg tagaaataat tacctctaca ttttgaaaat aatcaacaaa aaaggaattg
     2281 gtctcactag ttgaatccaa cgcatcttga atcaggcgaa cattatcttt tgaaaataca
     2341 atagatagcc atagataaag actacaaaat aatatataaa cgccaccaat aaaaatatca
     2401 taggttataa gcgaaaatgc gtacaaagag ataatcaata taacatttaa aataaaacta
     2461 atactttcat actgtagcga tctagctgag tatgaaattt cagatgctaa attttgaact
     2521 tctcctaaat tcatatcaac gaacttagaa taacttttat ctgatatgtc cttaaaaaca
     2581 atagatttcg aaacttttct gactttttgc aacatataat ttttcggaaa cgctacaaat
     2641 gatacagata aaaatgataa taaaagtaag aatagataag tataatctat agttgattta
     2701 gtaaatgaaa aaagttcaga tattaaaaaa ggctggattc ctatcaataa gaataaaatg
     2761 actatgatgc ctacatagat acaaacttga gtaattccta tacttttaat taattgtcta
     2821 aaaaaactta ttgttcgctt tttattcatt ctatcccctc ttcatttata ataaattctt
     2881 ctaaagttgt tgctggcgaa ctcaatgctc tttttaaaac taatctccaa gtttgaaaat
     2941 ctgcatcttt ccacttactt ctttctttta tataatcaat aattttccta aactcatctt
     3001 gtttcatatc ttttccataa atactaaata aaaattcagc aattgccgct ccactattat
     3061 aataatccga ttgctgtata ttccgatata aatgatttaa cttaaaagaa cttggtaata
     3121 aattattaga acttaaccca ataattatag gctctatttt ctctagtcct gatttaaaag
     3181 taaccttaag tggtacacaa tacattccct ttacattatt atttttgaga gggactaaaa
     3241 atgaaaatat tttactttct cctatcctat cacctataag aatttctttc tgagatatta
     3301 ctgctggaaa catcttgata ttctctatat catcactatc tacctttatc agtacctgta
     3361 actcattatt ttctacaata tctcctattt caaaatgatt tatgagcaat tcatcagggt
     3421 aatctgcaga tacttgatat ccttgtaata aaccatgtgc tggtggttcg ccaccgccca
     3481 caattatgca attactttgt attgtaatcg cactataagg agagtgtcct atcacctttc
     3541 gatcatatat tctacctgtt accttatcaa taaagtacat tgaacaatca gctaaaacca
     3601 aaagagtttt tctaaaaata ctaggaggag ccacaattga accttctttt gtttctatta
     3661 tccaatctat ttccccagat tttttattta tacaatatat attccctgac agagttgtag
     3721 tataaacgtt gttactatct actacgggta aatgtctccc tgctatacct gatattcgtt
     3781 gttcccaaag tatacttcct gaattagcat tgatattgaa tacgatttct ccacaggaaa
     3841 caaatatact atcatccgat aagaaaaaac cagatgtgtc tgcactaata atatagctct
     3901 cgcccaaatc aacttcaaaa agagctcctc catcaagatt gagaccacct atgacaatat
     3961 gagatgtttg cgttaatgcg tcattcttag tgtacattgt caataaatat ccattaaata
     4021 aagatattgt tccaaaaaag aaagaatttt ctttttctat tttaaaatct aattttccat
     4081 cttcggttat aaaataaatt atattgcttg aagaaaatac tattttatca tcaataatat
     4141 taagtgaact tcgtactcgc ccacaccctc tatattccca aataaatttt ccgtcttctt
     4201 tcgaaaatgc tgcaatagaa tcaaattcct tcaatacaat aactaaattt ttatatacta
     4261 agggtgtccc atatcctccg ttgactacac tctgtgtcca taaaacttca ccagtaaaaa
     4321 tattgaactt tataatacca tattcttgct taacttctga ataaaatact acatatccat
     4381 cttgtggatt ttca
//
LOCUS       DASFRC010000178         4329 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.178, whole genome shotgun sequence.
ACCESSION   DASFRC010000178 DASFRC010000000
VERSION     DASFRC010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4329)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4329)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4329
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.178"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..967)
                     /locus_tag="U1087_001979"
     CDS             complement(<1..967)
                     /locus_tag="U1087_001979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756415.1"
                     /translation="MNTKKWRTSLLIPGIVLFGTVALVNNVSAQEVKNTIISAKQPDG
                     RQATSKAVNVKIPAVVRLFGRELLENEFKFELREANSEKLIDTTQNTKEGQVSFKNLS
                     FNKPGEYWYTISEVKNELSGVEFDSKYIVAKITVEDRNNGQLQAMIEFIADDNVFNNF
                     YTPAPAAASLSIKKVLEGRTLNTGEFEFVLKNEKGDEIEKVSNQADGSVNFSALTFTK
                     EGTYTYTVSEVDGGLGDIIYDKSDIKATVTVKDNNHGQLVSTVTYENSDQIFENILNP
                     GKLIAPTTDSVITDNEVSKEAMTDKEKGNIEPPKEQITNEEKDNIE"
     gene            1277..2275
                     /locus_tag="U1087_001980"
     CDS             1277..2275
                     /locus_tag="U1087_001980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004192896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEM4756416.1"
                     /translation="MKVLLYLEGKTVLEKSGIGRALQHQMEALDMAGIPYTTDLLGDY
                     DVIHINTYGPRSWLLLHAAKRSGKKVIMHGHSTKEDFQNSFIGSNTLAPFVGKYLASM
                     YQKADFVITPSEYSKKLIQSYGVTTPIIAVSNGIDLDKYKKDERKEAIFREHFKIEEG
                     QPVVVCAGLYFRRKGIEDFVKVAEKMPHVRFIWLGSINKWLIPSYIRKIVEGDHPANV
                     EFPGYFKGAVFQGAMSGADAFFFPSYEETEGIVVLEALASHQHVVLRDIPVYDGWIDE
                     NVAELGHTVADFVDSIQKILDKQVDKREAGYQVAVSRSIDNVSHQLVDAYRQVLEM"
     gene            2276..3589
                     /locus_tag="U1087_001981"
     CDS             2276..3589
                     /locus_tag="U1087_001981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEM4756417.1"
                     /translation="MRIGLFTDTYFPQVSGVATSIRTLKTELEKLGHTVFIFTTTDED
                     VNRYEDWDIIRIPSVPFFAFKDRRVAYAGFTDALKIASRYKLDIIHTHTEFSLGILGK
                     MIAKELDIPVVHTYHTQYEDYVHYIAKGRIIRPGMVKYLVRAFLKDLDGVICPSEIVE
                     DLLMSYNVPISKRVIPTGIDLAKFDRPEIGKDETDELREQLGIASDETMLLSLSRISH
                     EKNIQAIVQAMPKILLENPKVKLVIVGGGPYTDDLQEMIAELNLDEHVQLTGMIAPSD
                     TALYYKAADFFISASTSETQGLTFLESLASGTPILAHSNPYLKNVITDKMFGTLFIRE
                     QELVDAVVEAIVATPPMNPYVLDKKLYEISSTNFGRKVFEYYLDLKISYDFRKEHTNQ
                     DSVAEALIKEAIYLPQKVVVKSTDTTAKILKKSVEQVKSIRNFFE"
     gene            3604..3978
                     /locus_tag="U1087_001982"
     CDS             3604..3978
                     /locus_tag="U1087_001982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756418.1"
                     /translation="MEKLRKESWKNLVLATLIILSMYAGIYLIAFHLISDTMLSKVLV
                     VGNILLYTPIVLFLTGLLYGFFHGFSPSLLALVLLLYPVTIFFFKEWIILYQIVYTLC
                     ALIGNGIGALLFYLRKKSKKNP"
     gene            4236..>4329
                     /locus_tag="U1087_001983"
     CDS             4236..>4329
                     /locus_tag="U1087_001983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018030221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG-like protein"
                     /protein_id="HEM4756419.1"
                     /translation="MLPDDLLKRCQDVRHAYRELELKHHDKEWSI"
BASE COUNT         1259 a          760 c          895 g         1415 t
ORIGIN      
        1 cttcaatatt atccttctct tcattagtta tttgctcttt agggggttcg atatttccct
       61 tctctttatc ggtcattgct tccttagaga cttcattatc agtaataacg ctatccgtgg
      121 ttggcgctat taacttccca ggattcaaaa tattctcgaa gatttgatcg ctattttcat
      181 aagtcactgt tgagactagt tgtccgtgat tgttatcttt cacagtgaca gtggccttaa
      241 tatctgattt gtcatagata atatcgccaa gtccaccatc aacttctgaa acagtgtagg
      301 tataggttcc ctcttttgta aatgttaggg cactaaagtt tacagaacca tctgcttgat
      361 tgcttacctt ttcgatttca tcgccttttt cattttttaa aacaaattcg aattcaccgg
      421 tgtttaaggt acgtccctcg aggacttttt taatcgaaag actagcagca gctggagcag
      481 gtgtatagaa attgttaaag acattgtcat cagcaataaa ttcaatcatt gcctgtaatt
      541 gtccgttgtt tcgatcttct acagttattt ttgctacaat atatttcgaa tcaaactcaa
      601 caccactaag ctcatttttt acttctgaaa ttgtatacca atattcgccg ggcttattga
      661 atgatagatt tttaaaacta acttgaccct cttttgtatt ttgagttgta tcaataagtt
      721 tctcactatt cgcttctcta agctcaaatt taaattcatt ttctagaagc tcacgaccaa
      781 atagtcgtac tactgctggt attttgacat taaccgcctt tgaagtagcc tgtctcccat
      841 caggttgttt tgcgctgatg atggtatttt ttacttcttg tgccgataca ttattcacta
      901 gagcaacagt tccaaataat actattcctg gtattaggag cgatgttctc catttcttag
      961 tattcattat cctttttcct ttctcaaagc atgatttatg tagctaatct gtgtcgttat
     1021 aacatgcaaa ttttacatct aaagtcctca ataaattttg aaagcttagt gccagaatgt
     1081 gcaccattcg taaattataa catcttctaa aaaaacattc aagctgtcct tctgctttta
     1141 aaatctgttt tatatgtttt ttatgtaatc atatatttgg gattatattc tttagtattg
     1201 gctttaattg atacaaaatt cgtgtagaat acagttaaaa tatgaaaaaa atgtaaaaaa
     1261 gggctataat ggtattatga aagtactatt gtatttagaa ggtaaaactg ttttagagaa
     1321 atcaggaatt ggccgggcac ttcaacacca gatggaagcg ctagatatgg caggcattcc
     1381 ttatacaaca gacctgttgg gagattacga tgtcattcat atcaatacct atggtccacg
     1441 ctcctggtta ttgctacatg cagccaaacg gagtggaaaa aaggtaatca tgcatggaca
     1501 ttccacgaag gaagattttc aaaattcctt tatcggttcg aataccctag ctccttttgt
     1561 agggaaatat ctagcaagca tgtaccaaaa ggcagacttt gtcatcactc cttcagagta
     1621 ttcaaaaaaa ctcatccagt cttacggtgt gacaacgcca attatagccg tttcgaatgg
     1681 tattgattta gataaatata agaaggatga acgcaaggaa gcaatctttc gagagcattt
     1741 taaaattgaa gaagggcagc cggttgttgt ctgtgcagga ctctacttcc gacgtaaagg
     1801 aattgaagac tttgtcaagg tagccgaaaa gatgccgcat gtccgcttca tttggctcgg
     1861 ttcaatcaat aagtggctga ttccgtcata tattagaaaa attgttgagg gagatcatcc
     1921 agcgaatgtc gagtttccag gttattttaa aggtgctgtt tttcaaggtg caatgagcgg
     1981 agcggatgcc tttttcttcc catcgtatga ggaaacagaa gggattgttg ttctggaagc
     2041 tcttgctagt catcagcatg ttgttctaag agatattcca gtttacgatg gttggattga
     2101 cgaaaacgtt gccgaattgg gacatacagt ggctgatttt gttgattcta ttcagaaaat
     2161 cttagacaag caggttgata aacgtgaggc gggctaccag gttgcggtta gtcgctcgat
     2221 tgacaatgtt tcccaccaat tggtggatgc ctatcgacaa gtattggaga tgtaaatgcg
     2281 gattggattg tttacggata cctattttcc acaggtttca ggagtcgcga cttcgattcg
     2341 gactcttaag acagagttgg agaaattggg acatacggta tttattttta cgacgacaga
     2401 tgaggatgtg aatcgctacg aagattggga cattatccga attcctagcg tacctttttt
     2461 tgcctttaaa gatcgtcgag tggcctacgc aggttttaca gatgctttaa agattgcaag
     2521 tcgctataaa ctagatatta ttcatactca tacagaattt tctttgggga ttttggggaa
     2581 aatgattgcc aaggaactag atattccagt ggtacatact tatcacaccc agtatgaaga
     2641 ctacgtacac tatattgcca aggggaggat tattcgtccc gggatggtta aatatttagt
     2701 acgggcattt ttaaaagatt tagatggggt aatttgtccc agtgagattg ttgaagatct
     2761 tttaatgagt tacaacgttc cgatttctaa acgagtaatt ccgacaggaa ttgacttggc
     2821 aaagtttgat agaccagaaa ttggaaagga tgaaacagat gagttgcggg aacaactagg
     2881 aattgctagt gatgaaacga tgttgttaag tctgtctagg atttctcacg agaagaatat
     2941 ccaagcaatc gttcaggcaa tgccaaaaat tttgctagaa aatccaaagg tgaagttggt
     3001 cattgtcgga ggtggacctt atacagatga tcttcaggaa atgatagcgg agcttaatct
     3061 agatgaacac gtccagttga cgggaatgat tgcaccaagt gatacagcac tttattataa
     3121 agctgcggat ttctttattt ctgcttcgac cagtgaaacg cagggactaa ctttcttaga
     3181 aagcttagct tctggaactc ctattttggc acatagcaat ccctacttaa aaaacgttat
     3241 aacagataag atgtttggga ctctcttcat tcgagaacag gagttggtag atgccgtcgt
     3301 tgaggcgatt gttgctacgc caccaatgaa tccgtatgtg cttgataaga agctctatga
     3361 gatttcttct acgaattttg ggcgcaaggt ttttgagtat tatctagatt tgaagatttc
     3421 gtatgatttt agaaaagaac atactaatca agatagcgta gcagaagctt tgataaaaga
     3481 ggctatttac ctaccgcaaa aagtagtagt taaatcaaca gacacgacag caaaaatatt
     3541 gaaaaaatca gtcgaacaag taaaatcaat tcgaaatttc tttgaataat ttggaggttt
     3601 caaatggaaa agcttcggaa agagagttgg aagaatctgg ttttggcaac tcttattatt
     3661 ctgtccatgt atgcaggtat ttatctgatt gcctttcatc tgattagtga caccatgctt
     3721 tctaaggtgc tggtggtcgg gaatatattg ctctatactc ccattgtact attcctaaca
     3781 ggtcttcttt atggattttt tcacggcttt tctcctagcc ttcttgcctt agttttattg
     3841 ctttatcctg taaccatctt tttctttaag gaatggatta ttctctatca gattgtctac
     3901 accttatgtg ctctgattgg aaatgggata ggagctctgc tattttacct aagaaagaaa
     3961 agtaagaaaa atccttgaaa aatcaggaaa tcctgttata atagctttta gagacttatc
     4021 aattctagga aatctttgag agagtgtgcg gttggtgtaa gcacatagag gataggattg
     4081 acactactcg gtatgatttt atgcaaacat aaaagggtgg ttcccttatc gccaatctga
     4141 ggtagtcagg ctttttagcg tgactgcgaa tgaaggtgga accacgttac gacgtccttt
     4201 tgcgagggcg tcgtattttc ttttgaggag gaatgatgct acctgatgat ttattaaaac
     4261 ggtgtcaaga tgtgcgtcat gcttacagag agttggaact caagcaccac gacaaagagt
     4321 ggtccattg
//
LOCUS       DASFRC010000179         4299 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.179, whole genome shotgun sequence.
ACCESSION   DASFRC010000179 DASFRC010000000
VERSION     DASFRC010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4299)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4299)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4299
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.179"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..720
                     /locus_tag="U1087_001984"
     CDS             <1..720
                     /locus_tag="U1087_001984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEM4756420.1"
                     /translation="PLVSGFSYADYNDLESVKSLVGPQTAAVMLELVQGEGGVRRADK
                     EFIQQLASFCQSSNILLIVDEVQTGIGRTGSLFAFEQYQIEPDIITLAKGLANGLPVG
                     AMLGKSSLGTAFSPGSHGTTFGGNKLALSSSKQVLELLTPAFLKEVQSKSAYFQSQLE
                     EKLASISTVKEIRGMGMMVGIETDADLGQIVTSTRQKSLIVLTAGNNVIRLLPPLTVT
                     IEEIDQAITILQKVMSDLEKD"
     gene            736..1749
                     /gene="argF"
                     /locus_tag="U1087_001985"
     CDS             736..1749
                     /gene="argF"
                     /locus_tag="U1087_001985"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000195397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEM4756421.1"
                     /translation="MTNIFKGRSFLAEKDFSAAELEWLIDFSAHLKDLKNRNVPHKYL
                     EGKNIALLFEKTSTRTRAAFTVAANDLGAHPEYLGAKDIQLGKKESTEDTAKVLGRMF
                     DGIEFRGFSQEMVEELAEFSGVPVWNGLTDLWHPTQMLADFLTIKEEFGTLVGLTLVY
                     CGDGRNNVANSLLVTGALLGVNVHIFSPKELFPVQSILDLAQSFAAQSGASILLTEDA
                     DEAVQGADVLYTDVWVSMGEEDKFQERISLLQAFQVNMDLIQKANNDKLIFLHCLPAF
                     HDTHTSYGKEVAEKYGIQEMEVTDEVFRSTYARHFDQAENRLHTIKAVMAATLGDPFV
                     PRV"
     gene            complement(1979..2935)
                     /locus_tag="U1087_001986"
     CDS             complement(1979..2935)
                     /locus_tag="U1087_001986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000523788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HEM4756422.1"
                     /translation="MGLLQDGKWVDQWYDTKSTGGKFVRSVTQFRNWITPDGQAGPTG
                     KGGFKAESGRYHLYISLACPWASRTLIMRKLKGLEDHISLSVVHPLMLENGWTFEDGP
                     GVIKDTLFNSDYLYQVYLKADPHYSGRVTVPVLWDKETNTIVSNESAEIMRMFNTAFN
                     DITGNQDDYYPADLQAEIDAMNDFVYPNFNNGVYKAGFSTSQAVYEKEVKNLFAALDK
                     LEEHLADKNYLVGNQLTEADIRLFTTLVRFDPVYFGHFKCNIKALVDYPNLWDYTKRI
                     YNHAGIAETVDFDHIKQHYYGSHKTINPTGIVPVGPDLDWTL"
     gene            3073..3789
                     /locus_tag="U1087_001987"
     CDS             3073..3789
                     /locus_tag="U1087_001987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEM4756423.1"
                     /translation="MRLDKCLEKAKVGSRKQVKKLFKAQQIKINGQAAQSLSQIVDPE
                     LQTIQVSGKKVALEGSAYYLLHKPAGVVSAVTDQEHQTVIDLISPQDSREGLYPVGRL
                     DRDTEGLVLITNNGPLGYRMLHPSHHVDKVYYVEVNGCLAEDASKFFASGVTFLDGTR
                     CQPADLTVLEASLDHSRATIKLAEGKFHQVKKMFLAYGLKVTYLKRISFGGFELGDLE
                     RGAYRQLTPNEMEHLFTYFD"
     gene            3803..4282
                     /locus_tag="U1087_001988"
     CDS             3803..4282
                     /locus_tag="U1087_001988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HEM4756424.1"
                     /translation="MSIYDFTVQKQDGTDQSMAEYQGQVLLIVNTAPGCGLAPQYKEL
                     QELYDTYKDNGFVVLDFPCNQFLNQAPGSAEDINQICSLNYGTTFPRFAKIAVNGSEA
                     SPLYRYIKKEKSTLLGGRIEWNFTKFLVDRQGRVVKRYLPTTSPLKLKEDIELYLEK"
BASE COUNT         1244 a          852 c          976 g         1227 t
ORIGIN      
        1 ccactagtct caggcttctc ctatgcggat tacaatgatt tggagtcggt aaaatcatta
       61 gttggtccac aaacagctgc cgttatgctg gagctagttc aaggagaagg tggggttcga
      121 agggcagaca aagagtttat ccagcaattg gcttcgtttt gccagtcttc aaatattcta
      181 ctgattgtag atgaggtaca gacgggaatt ggtcggacgg gcagcctttt tgcctttgaa
      241 cagtaccaga ttgagccaga tatcatcact cttgccaaag gcttggctaa tggtctgcca
      301 gtcggagcca tgttagggaa atctagtcta ggaacagctt tttcgccagg cagtcacggg
      361 acaacttttg gtggcaacaa gctggccctt tccagcagta agcaggtctt ggaattgttg
      421 acgccagcat ttctcaagga ggttcaaagc aagtcggctt attttcagag ccaacttgag
      481 gaaaaactgg cttccatttc aactgttaag gaaatccgtg gtatgggtat gatggttggt
      541 atcgaaaccg atgctgattt agggcagata gttacatcta cgcgtcagaa gagtttgatt
      601 gtattgacag ctggcaacaa tgttatccgt ttgttgcccc cgctaacagt cacaattgaa
      661 gaaattgacc aggcaattac cattttacag aaggtcatgt cagacttgga aaaagattag
      721 aaaggtcgaa tgaaaatgac aaatattttt aaaggaagaa gtttcttggc agaaaaggat
      781 ttttctgctg cagaattgga gtggttgatt gatttttcag ctcatttgaa agacttgaaa
      841 aatcgcaatg ttccccataa gtacttggaa gggaagaata ttgccttgct ttttgaaaag
      901 acatcaacaa gaactcgagc tgcttttaca gtagccgcta atgatctggg tgctcatcca
      961 gaataccttg gagccaaaga tattcaattg ggcaagaagg aatcgacaga ggatactgcc
     1021 aaggtcttag gacggatgtt tgatgggatt gaatttcgtg gttttagtca ggaaatggta
     1081 gaagaattgg ccgagttttc aggtgtgcct gtttggaatg gcttgaccga tctttggcat
     1141 ccaactcaaa tgctggctga ctttttgacc atcaaagagg aatttggcac attggtgggc
     1201 ttgacattgg tgtattgtgg agatggtcga aataatgtag ccaattcctt attagtaaca
     1261 ggtgcactct tgggggtcaa tgttcatatt ttctctccta aggaattgtt tccagtccag
     1321 tcgattttag acttggctca gtcctttgct gcccaatcag gagccagcat tctcttgact
     1381 gaagatgcgg acgaggcggt tcaaggggct gatgtcctct ataccgatgt ttgggtttct
     1441 atgggggagg aagataaatt ccaagagcgt atttccctct tacaagcctt tcaggtgaat
     1501 atggacttga ttcaaaaagc taataatgac aagctcatct tcctccattg tctgccggcc
     1561 ttccatgata cccatacgag ttatggcaag gaagtggcgg aaaaatatgg tattcaagaa
     1621 atggaagtga ccgatgaagt cttcagaagc acctatgctc gtcatttcga tcaggcagag
     1681 aacaggttac atacgatcaa ggcagtgatg gcagcaaccc tgggtgatcc atttgtaccc
     1741 cgagtataaa aagcgcactc cttaaaaaga gtgctcagta ttgaagaaaa agtccatttt
     1801 ggataatttt cttcaatctt ttttcttaat gttgaaaatt aaaaactctt agaaacactg
     1861 gaatatcaac atttctaaga gtttaatgac ttgctatctt tcgcaaactt cttctatttt
     1921 ttatattttt aggagtttgt ctacgttctg cgcactcctt aaaaagagtg ctttttcctt
     1981 ataaagtcca gtccaagtca ggtccgacag gaacaatgcc tgttgggtta atggtcttgt
     2041 gactaccata gtaatgttgc ttgatatggt cgaagtcaac cgtttctgca atgccagcat
     2101 ggttgtaaat ccgcttggta taatcccaca agtttggata gtccaccaag gccttgatat
     2161 tgcatttgaa atgcccaaag tacacagggt cgaaacgcac caaagtggta aagagtcgaa
     2221 tatcagcctc tgtcagctgg ttgccaacca gatagttctt atcagccaaa tgctcttcta
     2281 gtttatccaa ggcagcaaag agatttttga cttctttttc atagactgct tgactggttg
     2341 aaaaacctgc cttgtagaca ccgttgttga agtttggata gacaaagtca ttcatagcat
     2401 caatctcagc ctgcaagtct gctggataat aatcatcctg attgcccgtg atgtcattga
     2461 aggcggtatt gaacatccgc ataatctcgg cagactcgtt gctgacaatg gtatttgttt
     2521 ctttgtccca aaggacaggc acggtcaccc gaccagaata gtgtggatca gccttcaaat
     2581 agacctgata gagataatcg ctgttaaaga gggtatcctt gataacacca ggaccatctt
     2641 caaatgtcca gccattttcc aacatgaggg gatgaacgac agacaaggaa atatggtctt
     2701 ccaagccctt caattttcgc ataatcaagg tccgactagc ccaaggacaa gccagagaaa
     2761 tatagaggtg atagcgacca gactcggctt tgaaaccgcc ttttcctgtt ggacctgcct
     2821 gtccatctgg agtaatccag ttgcgaaatt gcgtgacact ccgaacaaac ttaccgcctg
     2881 ttgacttggt gtcataccat tgatccaccc atttgccatc ttgtaaaagt cccatgaatt
     2941 ttctccctta ctgaaaaaat gggaaatcca ataggatgat tggatttcct ttgtaaaaaa
     3001 tatatcacta actagtatta taaacctttt tcaaaaagag tcaagctata tgatttgtga
     3061 tacaatagtc ccatgagatt ggacaaatgt ttagagaaag ccaaagttgg ctcgcgtaag
     3121 caagttaaaa aacttttcaa agcccagcaa atcaagatta acggacaagc agctcaaagc
     3181 ctaagccaga ttgttgaccc agagttacaa actatccaag tttcgggtaa aaaagttgcc
     3241 ttagaaggtt ctgcctatta tttgctccat aaaccagcag gagtcgtttc tgccgtgaca
     3301 gaccaggagc atcagacagt catcgacttg atttctccgc aagacagtag ggaaggtctc
     3361 tacccagtcg gtcgcctgga cagggatacc gaaggcctag tcctcattac caacaatggt
     3421 ccgctcggtt atcgcatgct ccatcccagc caccatgtgg acaaggtcta ctatgtggag
     3481 gtaaatggat gcttggctga ggatgcttca aaattttttg cctcaggtgt tactttcttg
     3541 gatggaacac ggtgtcagcc tgcagatttg actgtcttgg aggcttcttt ggaccatagc
     3601 agagcgacca tcaagctggc agaaggtaag tttcatcagg ttaagaaaat gtttctagcc
     3661 tatggtctca aggtcactta tctcaagcgg atttcctttg gaggttttga gttgggggat
     3721 ttggaacgag gtgcatacag acaactcact ccaaatgaaa tggaacattt attcacttat
     3781 tttgactaga ggaggatata taatgagcat ttatgatttt acagtacaaa aacaagatgg
     3841 cacagaccag tccatggctg agtatcaagg acaagtttta cttatagtca atacagcgcc
     3901 aggttgtgga ttggcaccac aatacaagga attgcaagaa ctctatgata cttataaaga
     3961 caacggtttt gtcgtgctag attttccttg taatcaattt ttaaatcagg ctcccggttc
     4021 tgcggaagac atcaatcaga tctgtagctt gaattatggt acaacttttc ctcgttttgc
     4081 taaaattgct gtgaatggat ctgaagctag tccgctatat cgctatatta agaaagaaaa
     4141 atcaacctta ttaggaggtc gaattgagtg gaattttacc aagtttttgg tggatagaca
     4201 agggcgcgtg gtcaaacgat atttaccaac aactagtcca ttaaaactta aagaggatat
     4261 tgaactttac ctagaaaaat aacaagaagg ctggagtta
//
LOCUS       DASFRC010000180         4203 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.180, whole genome shotgun sequence.
ACCESSION   DASFRC010000180 DASFRC010000000
VERSION     DASFRC010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4203)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4203)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4203
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.180"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(959..1597)
                     /locus_tag="U1087_001989"
     CDS             complement(959..1597)
                     /locus_tag="U1087_001989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM4756425.1"
                     /translation="MLIHKSVNPVAVQNTYYVENDSHLLVVDPGSDWTKIQATIEKIG
                     KPISAILLTHTHYDHIMSLDILRKTYNFPPVYVAESEASWLYTPEMNLSGLPRHDDME
                     NVVCRPAEKIFQYQEDYQFDGFHFKVVPTPGHSIGGVSFIFPEDECVITGDALFRETI
                     GRTDLPTSNFDDLITGIREHIFTLPNHYTVHPGHGQNTSVGHEKNFNPFFRM"
     gene            1706..4174
                     /locus_tag="U1087_001990"
     CDS             1706..4174
                     /locus_tag="U1087_001990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DnaQ family
                     exonuclease/ATP-dependent helicase"
                     /protein_id="HEM4756426.1"
                     /translation="MNSMKDRRTSNRYAVVDLEATGTGADAKIIQIGIVLVENGEIID
                     SYATDINPYELLDDHIKNLTGITDQQLSQAPDFGQVASTIYDMIGDAIFVAHNVKFDA
                     NLLAEALFFEGYELLTPRVDTVELSQLFFPTFEKYSLGNLAEHLELGLDQAHTAISDA
                     LATARLLIKIQEKIKSLPRSIVEKILDLADNLLFESRLVIDELVPYLSETISTSLESV
                     HGLVLKKPEEIKSAYRLSEDFSTNIALLGLHERKKQTAFVQVVEKRLVDEEKVHFIQA
                     QAGLGKTYGYLLPLLAKSDQPLLVTVPTKLLQEQIMEKEGGKLKEIFRIPVVSLKSHK
                     HFIKLDNYWKTLQRQDDNRLVNQFKMQVLVWLCETTTGDLDELKQKQRYQAYFDEIAH
                     DGKLEPESLFWGWDFWQRLNHQALYSRLLITNHAYFFSHLKDQDPLMDKRLVVIDEAQ
                     KFLLAAENLATASQDLTSMLQVLQSKKDRATTILDQRLYESCQFELNHLLTRFRQHGQ
                     REVSKDELGQVKQNLAELQDIDLQDLDQLLDIYDHFWLEEKYLDDKRIAYLRGSKDSL
                     LNVTNYLPDTKIFCISATLTISKKVSLADLLGFEQVTMDLLPTQAVTNQQLLFPTHLP
                     DILAWTKEEHAAYLATTLGEIAELGRPILVLFTSISLLLQVSDLLEGNNIPHLAQHKH
                     GQEMTLKRKFERGECQILLGTGVFWEGVDFASQDQLVQVITRLPFDNPKDQFVQKINH
                     HLREEGKNPFYDYSLPMMMIKLKQAMGRTNRHDNQDSIVLVLDPRIHTKRYGQQILTF
                     FEKDYSMLSVDAKEIEGAIQDFFE"
BASE COUNT         1263 a          813 c          942 g         1185 t
ORIGIN      
        1 gaaaagcgac aaaacttaca ttagaaagag gtcatataga ataaatcaag agttagggga
       61 gtgactcttg attcctgagc ctagaaatag aaaagcgaag atcttatcac aaattttctt
      121 ggaatagaag acaaaaatat cgctatcatg actgaatatg atgtggaaac tcacttagat
      181 tgtgtgtctc caaaatgtct tgcctgaaag ggacaaatag tgaaatacaa cttccaaaga
      241 gcatctaaaa tcctttgctt agaagcagct gataatcctc tctccttatc catcttagaa
      301 agcgtcggtt caagtgtaaa ggatgcggga aaatggttgt cgctgaaatt cacttattaa
      361 aaaaatgacc aaatctctgt tgctattaac cagaaaaaac cccaattact actcgttgag
      421 aatcaagcaa tgagtaagca atgttcacct gatactattg tcatcaagga tagcttttct
      481 atcctattcg gaactataaa gtaagagttt ttgaaggggg tagatattgg ttgcatgtat
      541 tgaaaaactt gtggttccat ggtttttaaa gttactctat ctggctatat tttgaactat
      601 gttattacac cagtttctga ttatgtagtg aattgcttgt tggaaggcta tcagtaatct
      661 gtgattttag cagatttagt caggagttta aagacaactt ggaacagaag gatagaacat
      721 ggaaggagtt aattagtata acaaatggag attattagcc atgaggcgaa ccattgaaac
      781 tcgttttctg aatcatacgc tttgtttgat atagaacaaa cctttgccag aggactgctc
      841 ggattacagc tacggattga acaaatccta cttatctaca atctaagcta ttttgacttt
      901 aactagtagc acgggtaaaa aaactgccta gttcaatcag aactgggcag tacttatttt
      961 acattctaaa aaatggatta aaatttttct catgtccaac gctggtattt tgaccatgac
     1021 ctggatggac ggtgtagtgg tttggcaggg tgaagatatg ctctctgatg ccagtaatca
     1081 ggtcatcaaa gttgctggtt ggcaggtcgg ttcgaccaat tgtttcacgg aaaagtgcgt
     1141 ctccagtgat gacacattca tcctctggga agataaagga tacgccaccg atggagtggc
     1201 ctggtgttgg cacaaccttg aaatggaaac catcaaactg gtagtcttct tggtattgga
     1261 agattttttc agcaggtcgg cagactacat tttccatatc atcatgacga ggtagacctg
     1321 atagattcat ctctggtgtg tagagccagc tggcttcact ttcagccaca tagacaggcg
     1381 ggaaattgta ggtcttacgc aggatgtcca aactcataat atggtcatag tgagtgtgag
     1441 tcaggagaat agccgaaatt ggttttccga ttttttcgat agttgcttga atttttgtcc
     1501 agtcactccc agggtcaaca acaagcaggt ggctgtcatt ttcaacgtag taggtatttt
     1561 gaacggcaac agggttgaca gatttatgaa taagcatggt atttctcctc acagaaacag
     1621 tttttatatt agtagtctaa caaaaaaatc cagtgaattc atggattttg tttgaggctt
     1681 tttcagtggg agcgaatgtg ctataatgaa cagtatgaaa gacagaagaa caagcaatcg
     1741 gtatgccgtt gtggatttgg aagcaactgg tacaggtgct gatgcaaaaa tcattcaaat
     1801 cgggattgtt cttgttgaaa atggagaaat cattgatagc tatgcgacgg acatcaatcc
     1861 ctatgagcta ctggatgacc atatcaagaa tctgacaggt atcacagacc aacagctaag
     1921 tcaggctcca gattttggtc aggtagcaag taccatttac gacatgattg gagatgctat
     1981 ttttgtagcc cataatgtca aatttgatgc caatctcttg gcagaagcac tcttttttga
     2041 aggctatgaa ctgttgacac cgcgtgtaga tacggtagaa ttatcacagc tatttttccc
     2101 gacttttgaa aaatacagct tgggaaatct tgcagagcat ttggaacttg gtttggacca
     2161 ggcacacacg gctatttcag atgctctggc aacggctcga cttcttatca aaattcaaga
     2221 gaaaataaag agcttaccca ggtctattgt tgaaaagatt cttgatttgg cggataatct
     2281 gctctttgaa tcccgtctgg tcattgatga actggtgcct tacctgtccg aaacgatttc
     2341 gaccagttta gaaagtgttc acggcttggt cttgaaaaag ccagaagaaa tcaagtcagc
     2401 ctaccgatta tctgaagatt tttcgaccaa tattgccctt ctcggcttgc atgaacgaaa
     2461 aaaacaaact gcttttgttc aagtagtaga aaaacgcttg gttgacgaag aaaaagtgca
     2521 ttttatccaa gcgcaggcag gtttggggaa gacttacggt tatctcttgc ctttacttgc
     2581 taagtcggac cagcctctct tggtgacggt gccgaccaag ctccttcaag agcagattat
     2641 ggaaaaggaa gggggcaagc ttaaagagat atttcgtatt cccgtagtct ctctaaaatc
     2701 gcacaagcat tttatcaagt tagacaacta ctggaaaacc ctgcagaggc aggatgataa
     2761 tcgcctggtc aatcaattca aaatgcaggt gcttgtctgg ttatgcgaaa ccacgacagg
     2821 tgatttggat gagcttaagc aaaaacaacg ctatcaagct tactttgatg agattgccca
     2881 cgatgggaaa ttggagcctg aaagtctttt ctggggctgg gatttttggc aacgattgaa
     2941 ccaccaagct ctctatagta gactgctcat taccaaccac gcttactttt tcagccatct
     3001 taaggatcaa gaccctctca tggataagcg tctggtggtg attgatgaag cacaaaagtt
     3061 tctcttggct gctgaaaatc tagcgacggc ttcgcaagat ttgacaagta tgttacaagt
     3121 attgcaaagt aaaaaggaca gagcgacgac tattttggac caacgtttgt atgagtcgtg
     3181 ccagtttgaa ctcaaccacc ttttgacccg ttttcgccag catggacagc gagaagtttc
     3241 aaaagacgaa ctgggtcaag tcaagcagaa tctggctgag ttacaagata ttgacctaca
     3301 agacttggac caactccttg atatctacga ccatttttgg ctggaagaaa agtatcttga
     3361 tgacaagcga attgcttatt tgcggggctc caaggacagc cttttgaatg tgaccaacta
     3421 cctgccagac accaagattt tttgcatcag tgccaccttg accatcagca aaaaggtcag
     3481 tctggcggat ttgctgggct ttgagcaggt caccatggac ttgcttccga cccaggcagt
     3541 gaccaatcag cagctgcttt ttccgaccca tctccccgac atcctcgctt ggaccaagga
     3601 ggagcatgca gcttatttgg ctactacttt aggagaaata gcagagctgg gacgaccgat
     3661 tttggtcttg ttcacatcga tttctctgct cttgcaggtg tcggatttgt tagaaggcaa
     3721 taacattccc cacctagccc aacacaagca tggccaggaa atgactctca aacgaaaatt
     3781 tgaacgagga gaatgccaaa ttttactcgg cacaggtgta ttctgggagg gcgttgactt
     3841 tgccagtcag gaccaattgg ttcaggttat tacaaggctc ccattcgata atccaaagga
     3901 ccagtttgtg caaaaaatca atcaccatct gcgtgaagaa gggaagaatc cattttacga
     3961 ttacagcctg cctatgatga tgattaagct caaacaagcc atgggtcgga ccaatcggca
     4021 tgataaccaa gattctatag tcttggtttt ggatccgcgt atccatacca aacgctatgg
     4081 acagcaaatt ctcacctttt ttgagaaaga ttattcaatg ttaagtgtgg atgcgaaaga
     4141 aatagaagga gctattcaag atttttttga ataagttgaa agggagtgag aaagaactcg
     4201 act
//
LOCUS       DASFRC010000181         4160 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.181, whole genome shotgun sequence.
ACCESSION   DASFRC010000181 DASFRC010000000
VERSION     DASFRC010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4160)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4160)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4160
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.181"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(16..1539)
                     /locus_tag="U1087_001991"
     CDS             complement(16..1539)
                     /locus_tag="U1087_001991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol oxidase"
                     /protein_id="HEM4756427.1"
                     /translation="MTELDVVSDVVPHPEETYRRSRRASRRQQVQLNGEFHERVLKTK
                     YWPALVWSLVLSVFSVANPLLMPFATNIQTQNLYAGMAMANGQIPYGDFFGTSGLLFY
                     LLAFLGHRGGTFIIFGILQFIVLLIAGIYFYKIVAYFSQSEHLATSSSHWFYVFIFAL
                     GFGGMYAEMFALPFLLTSVWFLVRYFENAVRDEAFILYGIDAALVFLIYPKSLILWLV
                     AGLVLFIFNIQHRQVTRGIYQLLATIFGFLLILYAVGYYAFEAQILGTAIQQTFLYNL
                     QLDFHHSYLYLDLAIVSVFLLLSGFFKSFIQMLFSFKQGRHTYIKVLLLLTFLVQCVF
                     IIGNANFQWSQLILLLPYGFAMSVVYLRDEDVEDYRGYLRRQFFLPLAICLGIIAQPA
                     YLYLVQGDLRTDREQVANYIGEQTKDSDKIYVWDNSASIYLSSQRLSAATITTAEPYL
                     NTDDNKNSLMYDINKNEAKFVVVNKTLPILDEIKTNLESQYQSVQTTDYFTIYQKNE"
     gene            complement(1730..2950)
                     /locus_tag="U1087_001992"
     CDS             complement(1730..2950)
                     /locus_tag="U1087_001992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HEM4756428.1"
                     /translation="MLENWLNTKQGQVFHYKMEKIEYALELLGNPQFAVPVIHVAGTN
                     GKGSTIAFMRQLFQVHGLRVGSFVSPHMVSVHDRICIDSQPISDHDFQCYLQKVYDLE
                     QEVATRYEPFRYFEVMVLIMFLYFEAQQPDVALVEVGIGGLLDTTNVVAPALSVITSI
                     GMDHQDLLGSTLGEIAEQKAGIIKESVPVVLGPLSPETTAICRHIAQDKQASVYQFGQ
                     EFTYKAGQFSNADLELSELVLGLAGQHQEENAAVALQTFLLYMARIQKTVSPQLIKNA
                     LAQTNWPGRLELVAQEPKIYLDGAHNVPAIERLVEFIQVQEEPVTILFSALRRKDFQE
                     MLELLEEKLPHTALVLTSFAYDGALSEENRQGRDYVENYQQFIEDWQSSEQGILIVTG
                     SLYFISEVRRIFKK"
     gene            complement(3159..4061)
                     /locus_tag="U1087_001993"
     CDS             complement(3159..4061)
                     /locus_tag="U1087_001993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM4756429.1"
                     /translation="MNDKEFGQRVRQLRETASLTREQFCDDELELSVRQLTRIEAGTS
                     KPTFSKIQYIATRLGMGLYELMPDYVSLPERYSKLKFDVLRTPTYENEELMGKRADMM
                     TEIYDDYYDDLPEEEKIAIDAIQSIIDVFETKTAEFGQDILEDYFEQIQRKPQFSAND
                     LLIIQLYLINLRMEVKQSSDFQHFLDLVEKLPSQVELVESGDLFILRDVMITSVGLLG
                     QKEEFSYIPTLFEALDKIMQKTQDFQKKPILNLLKWKYELLINKDKDAATALYEEALL
                     FARIIGNAHLTAKLEEEWRKDSQL"
BASE COUNT         1299 a          864 c          752 g         1245 t
ORIGIN      
        1 tgactgcctg agcaatcatt cattcttttg ataaatcgta aagtaatccg ttgtctgaac
       61 agactggtat tgtgattcta aatttgtctt gatttcatct agaattggta aagtcttatt
      121 gacgactaca aattttgcct catttttatt gatgtcatac atcaagctat ttttattgtc
      181 gtcagtattc agatagggtt ctgctgtagt aatcgttgcg gcagataaac gttgacttga
      241 aagatagata cttgcgctat tatcccaaac ataaatctta tccgaatctt ttgtttgttc
      301 accaatgtaa ttggcaactt gttcacggtc agttctcaaa tctccctgta ccaaataaag
      361 ataagcaggt tgagcgataa tacccaagca aatagctaac ggaagaaaga attgacgacg
      421 caaataccca cgataatctt ctacatcctc atcacgcagg taaacgactg acatcgcaaa
      481 accatacggt aaaagaagaa tgagttggct ccattgaaag tttgcattcc caataataaa
      541 gacacattga actaagaaag tcaataatag gagaactttg atataggtat gtcttccttg
      601 tttgaaagaa aacagcattt ggatgaaact tttaaagaat ccagatagga gtaaaaatac
      661 agacacaatc gccaagtcta aatatagata ggaatggtga aagtctaact gtaagttata
      721 aaggaaagtt tgttgaatag ctgtccccag aatctgcgcc tcaaaagcat aataacctac
      781 cgcatataga atcagaagaa aaccaaaaat ggtcgctaat aattgataga ttcctcgagt
      841 aacttggcgg tgttggatat taaaaataaa taaaactaga cccgcaacta accaaaggat
      901 cagacttttt gggtaaatta aaaataccaa tgccgcatcg attccgtaga ggataaatgc
      961 ctcatcacgc actgcatttt caaaatagcg gaccagaaac cacacactag tcaaaagaaa
     1021 cggaagagca aacatttctg catacatccc tccaaaacca agtgcaaaaa taaatacata
     1081 gaaccaatga ctagaacttg tcgctaggtg ttctgactga ctaaaataag ctacaatctt
     1141 atagaaatag attcccgcta tcagtaacac tataaactgg aggattccaa agataatgaa
     1201 agtccctccc cgatgaccta agaaagcaag taagtagaat aataacccgc ttgtaccaaa
     1261 gaaatcacca taagggattt gtccatttgc cattgccatc cctgcatata aattttgagt
     1321 ttgtatattg gttgcaaatg gcattagcag tggattagct acgctaaaaa cacttaaaac
     1381 taagctccaa acaagagctg gccaatactt tgtctttaat actctttcat gaaattcacc
     1441 attcagttgc acttgctgtc tgcgtgatgc tctacgacta cgccgataag tttcctcagg
     1501 atgaggaact acgtccgaaa ctacatctaa ttctgtcatt ttcttctcct tggatttgct
     1561 ttccttatta tatcaaaaag cactcccgat gtcatttcct atcgggagtt ctggaaattt
     1621 ttgcaaactg ctctaattga cggaaggtat ggcgtttggt tttttcaaat tcctttaaaa
     1681 aggctactgt ttctgcatgt gtcataccta tttattcgca aaaagatatt cattttttaa
     1741 aaatccgacg aacttctgag ataaagtaga gagagcctgt gacaatcaaa ataccttgct
     1801 cgctagattg ccagtcttct ataaactgct gatagttctc aacataatct cgtccttgtc
     1861 ggttttcctc agacaaggca ccatcataag caaagctggt taatacaagg gcagtatgtg
     1921 gtaatttttc ttccaataat tcaagcattt cttgaaaatc cttgcgccga agggctgaaa
     1981 agagaatggt gacaggctct tcttgaacct gaataaattc aaccaaacgt tcgatagcgg
     2041 ggacattgtg ggctccatcc aaatagattt ttggctcttg agcaaccaat tccaaacgac
     2101 ctggccaatt ggtttgggca agggcatttt ttattaactg aggagaaaca gttttttgaa
     2161 ttcttgccat ataaagcaaa aaagtttgca aggcaacggc cgcattctct tcttggtgct
     2221 gaccagccaa gcctagaacc aattctgaca gttccaagtc cgcattgctg aactgtcctg
     2281 ctttataggt aaactcctga ccaaattggt agacagaggc ttgtttgtct tgggcaatgt
     2341 ggcgacagat agctgtggtt tctggagaaa gtggtcctaa gacgacaggc acgctttcct
     2401 tgataatccc tgctttctgc tctgctattt cccctaaagt cgatcctagt aaatcctgat
     2461 ggtccatgcc gatggatgtg atgacgctga gagccggtgc cacgacgttg gttgtatcca
     2521 aaagtcctcc gatgcccacc tctactagtg ccacatcggg ttgttgagct tcgaaataga
     2581 ggaacataat gagcaccatg acctcaaaat agcgaaaagg ctcataacga gtggcaactt
     2641 cctgctccaa atcgtagact ttctgtaaat agcactgaaa atcatggtct gaaatgggct
     2701 ggctgtcaat acaaatcctg tcgtgcacgc tcaccatgtg gggggataca aaactgccga
     2761 cacgcaagcc atgtacctga aagagctggc gcataaaggc aatggtcgac cccttgccgt
     2821 tggttccagc tacgtgaatg actggcactg caaactgggg atttcctagc agttctaagg
     2881 catactcaat cttttccatc ttataatgaa acacttgacc ttgcttggtg tttaaccaat
     2941 tttctaacat agccacctcc tacatactgt ctagtataac aaaaaagcca tacggatgtt
     3001 ggctttttga ataaggtgaa tgttaaaaat tccaccagct tgtcgagaaa tctccaaatg
     3061 gaaaaacttt tgtaaaaatt gtaatcattg ctctatctcc ttcatttgat aaaactattt
     3121 tacaatctta gtaaattttc caacaggaca aaaatgtcct ataattgact atcttttctc
     3181 cactcttctt ctaatttagc cgttaggtgg gcattaccaa ttattcttgc aaaaagaagt
     3241 gcttcttcat ataaggcagt tgcagcatct ttatctttat ttattaacaa ctcatatttc
     3301 cacttaagca gattaagaat aggtttcttt tgaaaatctt gggtcttctg cattatctta
     3361 tcaagtgctt caaagagtgt aggaatatag ctaaattctt ccttttgtcc caaaagtcca
     3421 acagaagtta tcatcacatc ccttaaaata aacaaatccc cagattcaac taattctact
     3481 tggcttggta acttttccac caagtctaaa aagtgctgaa aatcactact ctgtttaact
     3541 tccattctca aattgattaa atagagctgg attatcaaca aatcgttggc tgaaaattgg
     3601 ggttttcttt ggatttgttc aaaataatct tctagaatat cttgaccaaa ttctgctgtc
     3661 ttcgtttcaa atacatcaat aatagattga atggcatcaa tcgctatttt ctcctcctca
     3721 ggcaagtcgt cgtaataatc atcatagatt tccgtcatca tatctgcccg ttttcccatc
     3781 aattcctcat tttcataagt cggtgtacga agtacatcaa acttcagttt ggaatatcgt
     3841 tcaggtagcg acacataatc aggcataagc tcatagagcc ccatgcctaa gcgggttgcg
     3901 atatactgga tttttgaaaa agtcggctta gaagtacctg cttcgatacg ggttagttgg
     3961 cggacggaga gctcaagttc gtcatcgcaa aactgttcac gtgtcagact agcggtttct
     4021 cgaagttgac gtacacgttg tccaaattcc ttatcgttca taaaatacct ccaaatattc
     4081 ttttgtatat tatagcaaaa ttaccactca atttccatac tttttctgtt tttaaataaa
     4141 aaacaaacgg ttttacgttt
//
LOCUS       DASFRC010000182         4150 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.182, whole genome shotgun sequence.
ACCESSION   DASFRC010000182 DASFRC010000000
VERSION     DASFRC010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4150)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4150)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4150
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.182"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..780
                     /locus_tag="U1087_001994"
     CDS             <1..780
                     /locus_tag="U1087_001994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM4756430.1"
                     /translation="IGSWLGLGIVGTALGTVLARFLGTVLLYRKVQQTDLAVDLKQLF
                     HLGSPKEMVDLTLPAAAERLVMRLGQVVYFSLIVGLGTTVYASHMIAGNIESFTYMPA
                     YGLATAAAVLIGQALVKGDILTVRRVAFLSSAYGVAIMFLLGTILFFGAPSFALLFTK
                     DLEAVHQVVTALRIDAFNQPGLAVSLNMAGALQGLGDTKSPLYSTVIGMWGLRVVGAI
                     VLGQMFGLGIAGVWLSILIDLLLRAIFLTWRFHVKTRKLAE"
     gene            964..1341
                     /locus_tag="U1087_001995"
     CDS             964..1341
                     /locus_tag="U1087_001995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEM4756431.1"
                     /translation="MKTIHTDKAPAAIGPYVQGKVVGNFLFASGQVPLSPETGEVVGE
                     TIQEQTEQVLKNIAAILSEAGTDFDHVVKTTCFLKDMNDFVAFNKVYKTAFSADFPAR
                     SAVEVARLPRDVKVEIEVIAVID"
     gene            1363..2250
                     /gene="rapZ"
                     /locus_tag="U1087_001996"
     CDS             1363..2250
                     /gene="rapZ"
                     /locus_tag="U1087_001996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002933011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HEM4756432.1"
                     /translation="MSDKLHLVIVTGMSGAGKTVAIQSFEDLGYFTIDNMPPTLLPKF
                     LELIRHSQDNNKIALVVDMRSRSFFSEIREVLDEIEGAEDLDFKVLFLDATDNELVAR
                     YKETRRSHPLAADGRVLDGIQLERELLAPLKNMSQNIIDTTELTPRNLRKAISEQFAS
                     QDNQPSFRIEVMSFGFKYGLPLDADLVFDVRFLPNPYYKLELRNLTGLDAPVFDYVME
                     HQESEEFYSHLLGLIEPILPGYQKEGKSILTIAVGCTGGQHRSVAFAKRLADDLEKNW
                     NVNRSHRDKDRRKETVNRS"
     gene            2247..3221
                     /locus_tag="U1087_001997"
     CDS             2247..3221
                     /locus_tag="U1087_001997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YvcK family protein"
                     /protein_id="HEM4756433.1"
                     /translation="MRKPKITVIGGGTGIPVILKSLRDKDVEITAIVTVADDGGSSGE
                     IRQALQVTPPGDLRNVLLAMSDMPKLYEQIFQYRFADSDGPLAGHPLGNLIIAGISEM
                     QGSTYNAMRLLTRFFHTTGRIYPSSEQALTLHAIFTDGTEVAGESKISKHNGMIDHVY
                     VTNSYNDDEPKASRQVVETIMESDMIVLGPGSLFTSILPNLMISDIGKALKETKAEVT
                     YVCNIMTQRGETEFFSDADHVAVLNAHLAEQFIDTVLVNIEPVPQEYMNSNQFDEYLV
                     QVKHDFAGLQKQANRVISSNFLRLENGGAFHDGDLVVEELLKILQVRP"
     gene            3218..4135
                     /gene="whiA"
                     /locus_tag="U1087_001998"
     CDS             3218..4135
                     /gene="whiA"
                     /locus_tag="U1087_001998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein WhiA"
                     /protein_id="HEM4756434.1"
                     /translation="MSFTVQVKEELLLQSSQNKSELSAIIKLSGSLGLASSGLTLSIS
                     TENAKIARHIYELLLHFYQIKAEIRHHQKPNLKKNRVYAVLIEDGVNEILNDLHLADS
                     FFGLETGISPLVLENDSWSQAYLRGAFLAAGSVKDPEKGKYQLEIASVYSDHANDLAN
                     LMQKFLLDAKVIERSKGTITYLQRAEDIMDFLLVIGAEETKTEFENVKLLREARNDLN
                     RATNAEAANIAKTVNASMKTINNIIKIMDTIGLDQLSGDLQEIAQLRIQHPDYSIQQL
                     ADSLTVPITKSGVNHRLRKINKIADELID"
BASE COUNT         1123 a          771 c         1030 g         1226 t
ORIGIN      
        1 attggctctt ggttaggttt ggggattgta gggacagcct tgggaaccgt cttagctcgc
       61 tttcttggta cagtcttgct ttaccgaaag gtgcaacaga ctgacttggc agttgatctc
      121 aaacaattgt tccacttggg aagtcctaag gaaatggtgg atttgacctt acctgcagca
      181 gccgaacgct tggttatgcg gttgggacag gtggtctatt tcagtttgat tgtggggctg
      241 gggacgactg tctatgcttc tcacatgatt gcaggcaata tcgagagttt tacctatatg
      301 ccagcctatg gtcttgcgac agcggcggcg gttttgatcg gtcaagcctt ggtaaagggg
      361 gatatcctca cagttagacg tgtcgcattt ctcagctctg cctatggtgt tgccatcatg
      421 ttcctgctcg gtaccatctt atttttcgga gctccaagtt ttgctctgct atttaccaaa
      481 gacctagaag cagtccatca agtcgtcaca gccttacgga tcgatgcttt caaccagcca
      541 ggccttgcgg tttctttgaa catggctggc gctctgcagg gcttggggga taccaagtcg
      601 ccactctact ccacagtgat agggatgtgg gggctgcgcg tcgtaggtgc tatcgtctta
      661 ggtcagatgt tcggtttagg aattgccggc gtctggctgt cgattttgat tgacctgctc
      721 ttgcgagcga tttttctgac ttggaggttt catgtaaaaa caagaaaact ggctgaatag
      781 gctagttttt gggtataagc aggtagtttt agaagtagat tatggattgc cttatttcat
      841 gttgctgata ctatctcaat tcctttttta taaaagaaaa taggtgtagg atagtagtag
      901 gtgagctgtt ttatacagaa cttgtgctat aatagatata aaaaattaaa aggagataga
      961 gatatgaaaa ccattcacac agataaggca cctgcagcaa ttggcccata cgttcaaggg
     1021 aaggttgttg gaaatttcct atttgcctct ggtcaagttc ctttgtcacc tgaaactggt
     1081 gaagtggttg gtgaaaccat tcaggagcag actgagcaag tcttgaaaaa tatcgcagca
     1141 attttatcag aagcaggaac agacttcgac catgtggtga agacgacttg tttcctaaaa
     1201 gatatgaatg attttgtagc ctttaataaa gtttataaaa cagctttctc agcagatttt
     1261 ccagctcgtt cagcggtgga agttgctcgt ttgccacgtg atgttaaggt tgagattgaa
     1321 gttattgcag ttattgatta gaagagaaaa ggagggaatg tcatgtcgga caaactccat
     1381 ttagtaattg tgacagggat gtcgggagct ggtaagacgg tagccattca gtcttttgag
     1441 gacttgggct attttaccat tgataatatg ccaccgactc tcttgccaaa atttttagaa
     1501 ttgattcgcc acagccagga taacaataag attgctcttg ttgtagatat gcggagtcgc
     1561 tccttcttct cggagattcg agaggtgttg gatgagattg agggggcaga ggatttagat
     1621 tttaaagtcc tattcttgga tgcgacggat aatgaattgg ttgctcgcta taaagaaact
     1681 cgtcgttccc atcctttggc ggctgatggt cgtgttttgg acgggattca gctagagcgt
     1741 gaacttttgg ctcccttgaa aaatatgagt caaaatatta ttgacacgac agagctgact
     1801 cctcgtaatc tccgtaaggc aatctcggag cagtttgcta gtcaagataa tcagccgtcg
     1861 tttcgcatag aagtgatgtc ctttggtttc aaatatggac tacctctgga tgcagacttg
     1921 gtttttgacg ttcggttctt accaaatccc tactacaagt tggagttgcg taatctgacc
     1981 ggtctagatg ctcctgtctt tgactatgtc atggagcatc aagaatcgga agagttttat
     2041 agtcatttgc tcggcttgat agaaccgatt cttcctggtt atcagaagga aggaaaatca
     2101 attctaacga ttgctgttgg atgtacgggt ggtcagcata gaagcgtagc ctttgctaaa
     2161 cgtttggcag acgatttaga gaaaaattgg aatgttaatc gtagtcatcg tgataaggac
     2221 agacggaagg agacggtcaa ccgctcatga gaaaaccaaa aattacagtt atcgggggcg
     2281 gaactggtat tccagtcatt ttgaagagtt tgcgggataa ggatgtagag attaccgcta
     2341 tcgtgacggt agctgatgac ggaggatctt cgggggaaat tcgtcaggct ttgcaggtga
     2401 cccctccagg tgatttgcgt aacgtccttt tggctatgtc ggatatgccc aaactttatg
     2461 aacaaatttt ccagtatcgt tttgcggatt cagatggacc cttggctggt catccactag
     2521 ggaatctcat cattgctggt atttcagaaa tgcagggttc aacctacaat gcgatgaggt
     2581 tgttgacacg ctttttccat acgacagggc ggatttatcc atctagcgaa caggccttga
     2641 cccttcatgc tatttttaca gatgggaccg aggtagcagg tgagagcaag atttccaagc
     2701 ataatgggat gattgatcat gtctatgtga caaattctta taacgatgat gaaccgaaag
     2761 ccagtcgcca ggtagttgaa acgattatgg aaagtgacat gattgtactt ggaccgggtt
     2821 ctctttttac ctcaatcttg ccgaatctga tgatttctga cattggcaaa gccctaaaag
     2881 aaaccaaggc tgaagtgacc tatgtgtgca acattatgac ccaacgggga gagactgagt
     2941 ttttctcaga tgcagaccat gtggcggttc tcaatgctca cctagctgaa caattcattg
     3001 atacagtttt ggtcaatatt gagcccgttc cacaagagta tatgaatagc aaccagtttg
     3061 atgaatactt ggtacaggta aaacacgatt ttgcaggttt gcaaaaacaa gctaatcgtg
     3121 tgatttcttc gaattttctt cgtttggaaa atggcggagc tttccatgat ggtgacttgg
     3181 tggtagaaga gttgctcaag attttgcagg tgcggccatg agttttacag tacaagtaaa
     3241 ggaagaattg ctgcttcagt ctagccaaaa taagagcgag ctatctgcta ttatcaaatt
     3301 atcaggtagt ttgggcttag cttcatcagg tttgactctt tctatcagca cggaaaatgc
     3361 aaagattgcc cgtcacattt atgaactgtt actccatttc taccagatta aggctgagat
     3421 tcgccatcat caaaaaccta atctcaaaaa gaatcgtgtg tatgcagttt tgatagaaga
     3481 cggcgtgaat gagatattga acgatttgca tttggctgat agcttctttg gattagagac
     3541 ggggatttcc cccttggttt tggaaaatga ttcgtggagt caagcctatc ttcgtggagc
     3601 atttttagcg gcaggctctg ttaaggatcc tgaaaaggga aaataccagc ttgaaatagc
     3661 ttctgtctat agtgaccatg ccaatgacct ggccaatctg atgcagaaat ttcttttaga
     3721 tgccaaagtc attgagcgaa gtaagggaac cattacctat ctgcaacgtg cagaggacat
     3781 tatggatttt cttttggtga ttggagcaga agagacaaag acagaatttg agaatgttaa
     3841 attgcttcgt gaagctcgca atgacctaaa tcgagctaca aatgcggaag ccgctaatat
     3901 tgcaaagacg gtcaatgcta gtatgaaaac aatcaataat attatcaaaa ttatggatac
     3961 tatcggtcta gatcagttgt caggtgactt gcaggagatt gcccagttgc gaattcagca
     4021 tccagactat tccattcagc aattggcgga tagtctaacg gtaccgatca ctaaaagtgg
     4081 tgtcaaccat cgtttgcgga aaatcaataa gattgcggat gaattgattg actagatagg
     4141 tatacataga
//
LOCUS       DASFRC010000183         4092 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.183, whole genome shotgun sequence.
ACCESSION   DASFRC010000183 DASFRC010000000
VERSION     DASFRC010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4092)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4092)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4092
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.183"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            121..1746
                     /locus_tag="U1087_001999"
                     /pseudo
     CDS             121..1746
                     /locus_tag="U1087_001999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000371067.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
     gene            complement(1730..2971)
                     /locus_tag="U1087_002000"
     CDS             complement(1730..2971)
                     /locus_tag="U1087_002000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007520187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEM4756435.1"
                     /translation="MYKINKFEGEIYQKLNKILDSYNQEQNSLINLAACISYPFTEVL
                     KIQSFPLATLPTEGAVEKRFFPHCTSLDNIEVYSEELCLQLFDLNPGDYRVNVQPHSG
                     TQANQIVYNCVLERDDYILSLSPKDGGHISHTYTGKGTVKYYHLDHNLNIDYIELKEL
                     LDKYKPKLIIIGASSYGNEFNYQQIYEIIKEVSPNTLILADICHSVLYIMAKLHKSIF
                     PYVDFATFTMDKCLRGPQGGVLLYRSIFEEKITNSIFPRTQGGPTQTALFAKCICLIK
                     LLSIDIQDYAKQIIKNTLLFIKQLSKEGVDVVYKKPKTHIILVNLLNLNLSGKEAENL
                     LFQHKILVNRNQIPNDTHGPMTTSGMRLGTVGITNLSYTDEDIKKLAKLVANLLKYKQ
                     YDYSIYLDLIHKYHEQINISN"
     gene            3067..3963
                     /locus_tag="U1087_002001"
     CDS             3067..3963
                     /locus_tag="U1087_002001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000384879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEM4756436.1"
                     /translation="MNYDTIQRYLDFCAIQRRLSSHTIRAYKSDLHQYYNFGTNDIRS
                     YLTFLNQHIKKTSTLKRKIASLKSYYKFLEEEKLISKNPFHQLRLHYKEEKKLPKTIS
                     LKDLQKIYCFAHQQIENSKNKHSMRKAMRNLLLISLLLSTGLRISELCNLKLDNINLE
                     NRTIQILGKGKKERLLYIGNDETLSLLEDYIAHHCSHSSYLFTGVKNDDHLKEPSVRL
                     ILKNISHSLQLKKHITPHMFRHSFATMLLDNGVDIRQIQHLLGHSNINVTQIYTHVSQ
                     SKQVEILSEHNPLNQITPLLRT"
BASE COUNT         1505 a          644 c          560 g         1383 t
ORIGIN      
        1 ttatctgaag atataaaaat aaaatttgaa gatgacttta atacacttca aagcggagtc
       61 tccttaacta ttataaaccg aacaactgat aagttaaaat caattgataa actagataca
      121 ttggacaatt atactcctac tgtattaaat ttatcgtatc ttactgagga tgagtgtaaa
      181 ttactaataa gaaataaaat tgctttactt gataatatca aattgaatca aatctggcag
      241 ataacacaag gtaactataa agagattgaa ttgattatta acagacttat tgataatcca
      301 aattcagaat tatttaatat ttctgatata tatgacaaac ttccagatat tcaaaaaaat
      361 atacttctca tatcatcaat ttttcctgct ggtatgagaa aagatatagt ttttaattac
      421 attaaatcta tagtagatga aaatattgaa gtagctgatt ctctaaaatc ccttattgat
      481 gcaggtttcg tatatattaa tggagataca aatgataaaa tcaaaatttc acacgaatca
      541 attgtaaata gtattttaaa tcacacaaat acttctgatc ttcaattagt aaccaacaat
      601 ctaaaaatat atttagagca aactatctta tctataggag ttggtggcga gttagcttat
      661 ttaattcact gcttaataaa tatatgtaat attaaagagt tacgacaaaa tgtagaatat
      721 atcaaacagt tacttgaaat agaatacagg aaaaattcat atttttacat tgcatctttg
      781 agcaagaaga tacatcattt aatagaatta ttaccataaa aatacttaca ttatatattg
      841 aactcgtacc agtggatttc tgatttcaat ggaggcttag ctattttaaa tagccttcaa
      901 caagataatt attcaaaaga tttacaacta tactatccta gatttcaaat tcaaaaatat
      961 gaatttgagg aggcactaaa atcactggaa aagttagaaa atagctctgg aacattactc
     1021 tacaagttaa atgcttatgg tcatttaggt aaagatcaag atgcaattaa actccttaat
     1081 gagaccatga attctgtaga aaaagacgac ttctattata ttattttacg aaattctgct
     1141 cattatttcc caaccaaaga agctaccaaa aatctcgaat tagcattgga ctattttcaa
     1201 cgtaatgaat atcaaatacc tgttgcaaca gtatataata atctaggtgt tgttaatata
     1261 tgggatgggc aatatgatat agctttagag aatataaata aggccgaaaa aatactaaaa
     1321 aaatatgatt caaatgaaat ttttgaacca tattgtaata aatcaattat ttttctgatg
     1381 aataaaaatt atcaacaatc tctggaattt ataaataaat cacttcaaga atgtcctaaa
     1441 gctttgacct tagatattag gatgctcaag ttaaacaaat taattattga gttgatttct
     1501 gaaaaaatct cttttacaga atttcaaaat tcactaaaga gctttgaggc agaaattcca
     1561 ctcatagacg atccttggta taaatttcaa atagtataca atttacaaca atttgaagat
     1621 attccttttg tttatgaaaa aacttatatt gatgattatc aagacgggct caccaaatac
     1681 tatctgttga ttccatacaa aaaatataat ttctgtatag gtctttctcc taattggaga
     1741 tattaatttg ttcatggtac ttgtgaatga gatctaaata tatggaataa tcatattgtt
     1801 tatattttaa taaattagct actagtttag ctaatttttt tatatcttca tcagtatagg
     1861 ataaatttgt aattccaact gttcctaatc tcattcctga agtcgtcatt ggtccgtgtg
     1921 tatcatttgg aatttgattt cggttaacta atattttatg ctgaaaaagt agattctctg
     1981 cctccttacc actcaagttt agattcaata gattaactaa aattatatga gtctttggtt
     2041 ttttataaac aacatcaacc ccctctttac ttaattgttt tataaacaat aaagtatttt
     2101 ttataatctg tttagcataa tcttgaatat ctattgataa taatttgatt aaacagatac
     2161 atttcgcaaa taatgcagtt tgtgtaggcc caccctgtgt tctaggaaaa attgaattag
     2221 ttattttttc ttcaaatata gaacgataca gtagtactcc tccttgaggc ccacgtaaac
     2281 atttatccat tgtaaaagta gcgaaatcca catatggaaa aatcgactta tgtagctttg
     2341 ccataatata taaaacactg tggcaaatat ccgctaagat gagggtattt gggctaacct
     2401 cttttataat ttcataaatt tgttgataat taaattcatt tccatacgac gaagcaccaa
     2461 taataatcaa tttaggttta tatttatcta ataattcctt taattcgata taatcaatat
     2521 ttaagttatg gtctaagtga taatatttta cagtaccttt acctgtataa gtatgcgaaa
     2581 tatgtcctcc gtcttttgga gataacgata aaatataatc gtctctttct aaaacacaat
     2641 tgtagactat ttggttagct tgagttcctg aatgtggttg cacattaact ctataatcac
     2701 caggatttaa atcaaaaagt tgaagacaca attcttctga atatacttca atattatcca
     2761 atgaagtaca atgaggaaaa aagcgttttt caacagctcc ctctgttggc agagtagcga
     2821 gagggaaact ttgaatcttt aatacttcgg tgaatggata gctaatacat gcagcaaggt
     2881 ttatcaggct attctgttct tggttatatg aatcaagaat tttatttaac ttctgataga
     2941 tttcaccttc aaatttatta attttataca ctgatttctc ctaccgataa caatttatta
     3001 tcagtagtaa attgataaat tatcgtatat aatagcttta ttacgatata ttaaggagat
     3061 tatattatga attacgacac tatccagaga tatcttgact tttgtgctat tcaaagacga
     3121 cttagttctc atactatccg agcatacaaa tctgatttac atcagtatta taactttggg
     3181 accaatgata ttaggtccta tcttactttt ctcaaccaac atataaaaaa gactagcaca
     3241 ttaaaacgga agattgctag tcttaaatca tactataaat ttctggaaga agaaaaacta
     3301 atttcaaaaa atcccttcca tcagcttcga ctccactaca aggaagagaa aaagcttcct
     3361 aaaacgattt ccttgaaaga tttacaaaaa atatattgtt tcgcccacca acaaatagaa
     3421 aattctaaaa ataagcattc tatgcggaaa gctatgcgaa acctactcct tatctcgcta
     3481 cttttatcaa ctggtctacg catctctgaa ttatgtaatt taaaacttga taatatcaat
     3541 ttggaaaata gaaccattca aatactcgga aaaggaaaga aagagcgact actctatatt
     3601 ggaaacgatg aaacactttc gttacttgaa gactatatag cgcatcattg tagtcattct
     3661 agttatctat ttaccggtgt gaaaaacgat gatcatctta aagaaccaag tgtgcgctta
     3721 attctgaaaa atatttctca ctcgctacaa ctgaaaaaac atatcactcc acatatgttt
     3781 cgacatagtt ttgcaactat gttgcttgat aatggcgtcg atattcgaca aatacaacat
     3841 ttactgggcc acagtaacat caatgtaaca caaatctata ctcatgtctc tcaaagcaag
     3901 caggtagaaa ttctaagtga gcataatcct cttaaccaaa tcacaccact acttcgtaca
     3961 taagtaaccg caaaccaagt agacttgacc taaatcactg agtcggatag tcataataca
     4021 gcaccttatc caagattgtt tccattactt cagggttgat agattggaag aatgtgactt
     4081 ccgattttcc ga
//
LOCUS       DASFRC010000184         4089 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.184, whole genome shotgun sequence.
ACCESSION   DASFRC010000184 DASFRC010000000
VERSION     DASFRC010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4089)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4089)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4089
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.184"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(89..1381)
                     /locus_tag="U1087_002002"
     CDS             complement(89..1381)
                     /locus_tag="U1087_002002"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HEM4756437.1"
                     /translation="MTSVVVVGTQWGDEGKGKITDFLSANAEVIARYQGGDNAGHTIV
                     IDGTKYKLHLIPSGIFFPEKISVIGNGVVVNPKSLVKEINYLHDSGVTTDNLRISDRA
                     HVILPYHIKLDQLQEESKGENKIGTTNKGIGPAYMDKAARVGIRIADLLDKEIFAERL
                     RTNLAEKNRLFEKMYESTPIEFDEIFEEYYAYGQEIKKYVTDTSVILNDALDQGKRVL
                     FEGAQGVMLDIDQGTYPFVTSSNPVAGGVTIGSGVGPSKIDKVVGVCKAYTSRVGDGP
                     FPTELHDEIGDRIREIGKEYGTTTGRPRRVGWFDSVVMRHSRRVSGITNLSLNSIDVL
                     SGLETLKICVAYDLDGERIDHYPASLEQLKRCKPIYEELPGWSEDITGVRSLDELPEA
                     ARNYVRRISELVGVRISTFSVGPGREQTNILESVWSAK"
     gene            1745..3976
                     /gene="gshAB"
                     /locus_tag="U1087_002003"
     CDS             1745..3976
                     /gene="gshAB"
                     /locus_tag="U1087_002003"
                     /EC_number="6.3.2.2"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate--cysteine ligase
                     GshA/glutathione synthetase GshB"
                     /protein_id="HEM4756438.1"
                     /translation="MLQKLSPNSPILQATFGIERESLRINSNHRVAQTPHPHKLGSRN
                     FHPYIQTDYSEPQLELITPIAHSTKEARRFLGAITDVAVRSMDKQEYLWPLSMPPVIS
                     EEEIQIAQLDSDYEYQYRVGLGERYGKLVQSMSGIHYNFELGKDLTQQLFELSEETDF
                     IAFKNTLYLKLAQNFLNYRWLLTYLYGASSLAEKGFLTTEVGCVRSIRNSKYGYVNSD
                     DVHISFSSLEQYVADIEQAVQSGQLSAEKEFYSSVRLRGAKTSRDYLSKGISYLEFRS
                     FDLNPYDPLAISQETLDTVHLFILSLLWLDQLTDVDNTLAKADKLNNLIALSHPHTPL
                     PNDADATPILTAMKAIVLHFGLDDYYGQLIAHVEAALQNPRLTLSGKIAEQVEDGSLE
                     KFGQQQGQVFHDYAWTAPYALKGYENMELSTQMILFDAIQLGLNVEILDEEDQFLKLW
                     HGDHVEYIKNGNMTSKDNYVIPLAMANKVVTKKILDQAGFPVPAGAEFANKTDALRYY
                     GQVASSAIVVKPKSTNFGLGISIFQEPASLADYEKALDIAFSEDSHVLVEEFVAGTEY
                     RFFILDGKCEAVLLRVAANVVGDGSSTIRELVDQKNQDPLRGRDHRSPLEIINLGDIE
                     LLMLEQQGYTPDTVLPEGIQAFLRGNSNISTGGDSIDMTDQMDESYKQLAAAMATAMG
                     AWACGVDLIIPDRTKPASKDEPNCTCIELNFNPAMYLHTYTYAGPGQSITPKILKKLF
                     PEL"
BASE COUNT         1134 a         1025 c          839 g         1091 t
ORIGIN      
        1 ataagcatga ttatatcaaa ttctggacaa gaaagcaaag ttcgaccaaa cagaaaaaga
       61 ccgaactctc gttcagcctt aattcatctt attttgcact ccacacactc tcgagaatgt
      121 tggtctgttc acgaccagga cctactgaga aggttgagat acgaacgccg accaattcgc
      181 tgatgcgacg aacatagttg cgagctgcct ctggcaattc atccaaacta cgcacacctg
      241 tgatgtcttc tgaccaacct ggcaattctt cgtaaattgg tttgcaacgt ttgagttgtt
      301 ccaagcttgc tgggtagtgg tcaatacgct caccatccaa gtcgtaagcc acgcagattt
      361 tcaaggtctc aagacctgac aagacgtcaa tcgagttgag ggacaagttg gtaatacctg
      421 acacacggcg gctatggcgc atcaccactg agtcaaacca accgacacgg cgtgggcgac
      481 ctgttgtcgt accgtattct ttaccgattt cacggatacg gtcgccgatt tcatcgtgca
      541 attcagtcgg gaatggtccg tcaccaacac ggctagtgta ggccttacat acaccaacaa
      601 ccttgtcaat cttgcttgga ccgacaccgc taccgatagt cacaccacca gcaactgggt
      661 ttgaagaagt aacaaatgga taggtacctt ggtcaatatc caacataact ccttgcgcac
      721 cttcaaacaa gacacgcttg ccttggtcga gggcatcgtt caagataaca gatgtgtctg
      781 ttacatactt tttgatttct tgaccgtagg catagtattc ttcaaagatt tcgtcaaact
      841 caatcggagt tgactcatac atcttctcaa acaaacggtt tttctcagcc aagtttgttc
      901 tcaaacgctc tgcaaaaatc tccttgtcca agaggtctgc gatacggata ccaacacgtg
      961 cagccttgtc catgtaagca ggaccgatac ccttgttggt tgtaccaatc ttgttctcac
     1021 ctttagactc ttcttgcaac tggtccaatt tgatatggta aggcaagatg acatgtgcgc
     1081 ggtctgaaat ccgcaaatta tctgttgtca cacctgaatc atggaggtaa ttgatttcct
     1141 tcaccaaaga ttttggattg acaactacgc catttcctat aaccgaaatc ttttctggga
     1201 agaaaattcc agacggaatc aagtgcaact tatacttggt accgtcgata acgatagtat
     1261 gtcctgcatt atctccacct tgatagcgcg cgattacttc agcattagca gacaagaagt
     1321 ctgtaatttt acccttacct tcgtcgcccc actgggttcc tacaacaact actgatgtca
     1381 tattcactct ttctctgaac tggctgacca gcccagcctt tcttctactt ctggcaggaa
     1441 tctcacctgc aagtttcgtt ttacacacta ttctatcaaa aaacgaacat tttttcaaga
     1501 aattccaata atttcatata tagcgaatgt ttttattttt taaaaagtat attttaaaaa
     1561 aatccgatta aacatacgag atagacatgt gtaaatatgc ttttaacaga gaaatccgaa
     1621 gtctttgttt gctttcagtg attttcagta cattttttac cagaaacgta gcagaaattt
     1681 gtatttgccc tccaatctag ataaaattgg aataagactt tgacagaaat ataaaggact
     1741 tagtatgtta caaaaattat caccaaacag ccccattctt caggctactt ttggaattga
     1801 gcgcgaatca cttcgcatca attcaaacca cagagttgca caaactcccc atcctcataa
     1861 actgggttct cgtaacttcc acccctatat ccagacagac tacagcgagc cacagttaga
     1921 gttgattaca ccgatcgctc attcgaccaa ggaagcccgt cgtttcctcg gagctatcac
     1981 ggatgtagcg gtgcggtcta tggataagca agaatacctc tggcccctat ccatgccacc
     2041 tgtgatttca gaagaggaaa tccaaattgc tcaactagat agcgactatg agtaccaata
     2101 tcgtgtcggt ttgggggaac gctatggcaa gctcgtccag tctatgtctg gcatccatta
     2161 taattttgaa ttaggaaaag acttaaccca acaacttttt gaattaagcg aggaaacaga
     2221 ttttatcgca ttcaaaaata ctctctacct caaattagca caaaacttcc tcaactatcg
     2281 ttggctctta acttacctat atggagcaag tagcctagcc gaaaaaggat tcctaaccac
     2341 ggaagtcggt tgcgtccgtt ccattcgtaa ttccaagtac ggctatgtca actccgatga
     2401 tgttcatatt tccttttctt ctctcgaaca gtacgtggcc gacatcgaac aagctgtcca
     2461 atctggtcaa ctatccgctg agaaggaatt ttactcttcc gtccgactac gtggagcaaa
     2521 gactagccgc gactacctca gcaaggggat ttcttattta gaattccggt ccttcgacct
     2581 taacccctat gacccgcttg ctattagtca ggaaaccctt gatacagtcc acctctttat
     2641 cttatctctt ctttggctag accaactgac agatgttgat aacaccttag caaaagcaga
     2701 taaacttaac aatctcatcg ccctcagtca cccccacaca cctctaccta acgatgccga
     2761 tgccacgcca atcttgacgg ccatgaaagc catagttcta cactttggac tggatgacta
     2821 ctatggccag ctcattgcac atgtggaggc agcacttcaa aaccctcgtt tgaccctttc
     2881 tggaaaaata gcagagcagg ttgaagatgg gtctctggaa aagtttggtc agcagcaggg
     2941 acaagtcttt catgactatg cttggacagc cccttacgcc ctcaagggct atgaaaacat
     3001 ggaactctcc acccagatga ttctctttga cgccattcag ctgggcttga acgtggagat
     3061 tttggatgag gaagaccagt ttctcaaact atggcatggt gaccatgtcg agtacatcaa
     3121 aaatggcaac atgacttcca aggacaacta cgtcattcct ctagccatgg ccaacaaggt
     3181 cgtgaccaag aagattttgg accaggctgg ttttccagtg cctgcgggag ctgaatttgc
     3241 aaacaagaca gatgccctgc ggtactacgg gcaggtagcc agctctgcca ttgttgtcaa
     3301 accaaaatct accaactttg gactaggaat ctctatcttc caggagccag ccagccttgc
     3361 ggactatgaa aaagccctgg acatcgcctt ttcagaagat agccatgtgc ttgtggagga
     3421 attcgtggcg ggaaccgagt accgtttctt catccttgat ggcaagtgcg aggctgtcct
     3481 gctccgcgtc gcggccaatg tcgtggggga cggtagctca accatccgtg aattggtgga
     3541 ccaaaaaaac caagatccac tgcgagggcg tgaccaccgt tcaccgctgg aaatcattaa
     3601 cttgggcgac atcgagctac tcatgttaga acagcagggc tacacacccg atacagtttt
     3661 gccagagggc attcaagcct ttctgcgtgg caattccaat atctcaacgg gtggtgactc
     3721 cattgatatg accgatcaga tggacgagtc ctacaagcaa ctggctgccg ctatggcgac
     3781 tgctatggga gcttgggcct gtggtgtgga cttgattatc cccgaccgca ccaagccagc
     3841 cagcaaagac gagcccaact gtacctgcat cgaactcaac ttcaaccctg ccatgtacct
     3901 gcacacctat acttacgcag gacctggaca gagcattacg ccgaaaattt tgaaaaaatt
     3961 atttccagag ctttagtttt ccattttcct tactttgtta gtacttactt caaaggttcg
     4021 tggaactttt gaaggctgga gataaggcaa agcacattcg cctcaatagc tgcaggttgc
     4081 tgggagtgg
//
LOCUS       DASFRC010000185         4080 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.185, whole genome shotgun sequence.
ACCESSION   DASFRC010000185 DASFRC010000000
VERSION     DASFRC010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4080)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4080)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4080
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.185"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            64..903
                     /locus_tag="U1087_002004"
     CDS             64..903
                     /locus_tag="U1087_002004"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015632084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HEM4756439.1"
                     /translation="MTKADIIFKENIRKIMEEGVFSENARPRYKDGNVANSKYITGSF
                     AEYDLSKGEFPITTLRPIPIKSAIKEILWIYQDQTNDLSVLQEKYGVQYWNDWEVEGT
                     GTIGERYGAIVKKHDIISKILKQLEENPWNRRNVISLWDYEAFDQSAGLLPCAFQTMF
                     DVRQVDGEIYLDATLTQRSNDMLVAHHINAMQYVALQMMIAKHFGWKVGKFFYFINNL
                     HIYDNQFEQAEELFRRTPYEVEPRLVLNVPDGTNFFDIRAEDFELVDYSPVKPQLKFD
                     LAI"
     gene            1079..1591
                     /locus_tag="U1087_002005"
     CDS             1079..1591
                     /locus_tag="U1087_002005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HEM4756440.1"
                     /translation="MTKKIVAIWAQDENGLIGKGDRLPWSLPADLAHFKETTTGHTMV
                     MGRITFDGMGKRALPNRHTIVLTTDKTYQLESEHVTILHSVEDVLDWYNKQEQTLFVL
                     GGGQIFTAFAPYIETLIVTDIHGQFNGDVYFPKAFPMEKFQLQSANLRPKDEKNPYDF
                     TIKTYERRDG"
     gene            1594..1767
                     /locus_tag="U1087_002006"
     CDS             1594..1767
                     /locus_tag="U1087_002006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756441.1"
                     /translation="MERSIFGLFTAFLCGICVLCAIQAFRKKRFGLAILFLLNAFTNL
                     VNSIHAIYGFLFR"
     gene            1789..3015
                     /gene="clpX"
                     /locus_tag="U1087_002007"
     CDS             1789..3015
                     /gene="clpX"
                     /locus_tag="U1087_002007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HEM4756442.1"
                     /translation="MAVKHTHEFIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEI
                     IREELAEEVLTDLADTPKPQELLNILNNYVIGQDRAKRALAVTVYNHYKRINFQDSRD
                     ENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
                     LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVA
                     SVPPQGGRKHPNQEMIHVDTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDE
                     KESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRILTEPKNALVKQYQTL
                     LSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETILDVMFEVPGQDNVKRVRV
                     TKAAVDGKEKPLLETA"
     gene            3071..3658
                     /locus_tag="U1087_002008"
     CDS             3071..3658
                     /locus_tag="U1087_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002915299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HEM4756443.1"
                     /translation="MEINTHNAEILLSAVSKAQYPGDDIPEIALAGRSNVGKSSFINT
                     LLGRKNLARTSGKPGKTQQLNFYNIDDKIRFVDVPGYGYAKVSKTERAKWGKMIEEYL
                     TTRENLRVVVSLVDMRHEPSADDVQMYDFLKYYEIPVIIVATKADKIPRGKWNKHESM
                     IKKRLDFDKNDQFVIFSSETRHGYDQAWDAILSNI"
     gene            3681..4080
                     /gene="ndk"
                     /locus_tag="U1087_002009"
                     /pseudo
     CDS             3681..4080
                     /gene="ndk"
                     /locus_tag="U1087_002009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934976.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
BASE COUNT         1290 a          736 c          905 g         1149 t
ORIGIN      
        1 ttttcaaatg agaactccgg tacaaaactg gagttttttg ctagaatttg ctatactaag
       61 accatgacta aagcagatat tatttttaaa gagaacattc gaaagattat ggaagagggc
      121 gttttttcag aaaatgctcg cccacgttac aaggatggaa atgttgctaa ttctaagtat
      181 attactgggt cctttgctga gtatgacttg tctaagggcg agtttcctat taccacacta
      241 agaccaattc cgattaaatc cgccataaaa gaaattctct ggatttacca agatcagact
      301 aatgacttgt ctgttttaca agaaaagtat ggcgtccagt attggaatga ttgggaagtt
      361 gagggaacag gcacaatcgg tgaacgttac ggtgccatcg tgaaaaaaca tgacatcatt
      421 tcaaaaatcc tcaagcaatt ggaagaaaat ccatggaacc gtcgcaatgt gatttctttg
      481 tgggactatg aggccttcga ccagtcagct ggtctcttgc catgtgcctt tcagaccatg
      541 tttgacgttc gacaagtgga tggggagatt tatctggatg ctactctgac ccagcggtca
      601 aatgatatgt tggtagccca tcatatcaac gctatgcagt atgttgccct tcagatgatg
      661 attgctaaac attttggctg gaaggtaggg aagtttttct atttcatcaa taacctccac
      721 atctatgaca atcagtttga acaggctgaa gaattattcc gtcgcacacc atatgaagtt
      781 gagccacgtt tggtcttaaa tgttcctgac ggtaccaatt tctttgatat tcgggcagaa
      841 gattttgaat tggtggatta cagtccagtt aaaccgcagt taaaattcga tttagcgatt
      901 taagatgagg ggggctttcc agcaccagcg agattcacat tctacgaatc tcggaatctt
      961 ccctatctct gaggagtagg tgatagtttc aacatgataa aaatttgcac tagacctact
     1021 tggtaagtgc atttttcatg tttttttgat agaatgatag gacggaaagt gagagaaaat
     1081 gactaaaaag attgttgcca tttgggctca agatgaaaat ggattgattg gaaaaggtga
     1141 tagacttcct tggtcattgc cagctgactt agctcatttt aaagaaacga caacaggtca
     1201 cacgatggtg atgggacgta taaccttcga cggcatgggt aaacgtgctc ttcccaatcg
     1261 tcacacaatt gttttgacaa cggataaaac ctatcaacta gagagtgaac atgttaccat
     1321 tttacacagt gtggaagatg tcctagattg gtataacaaa caggagcaga cactatttgt
     1381 gcttggtggg ggacaaattt ttactgcttt tgcaccttac attgaaacat taatagtgac
     1441 agatattcac ggtcaattta atggcgatgt gtattttccg aaagcatttc ctatggagaa
     1501 atttcagcta caaagcgcca atttacgtcc aaaagacgag aaaaacccgt atgattttac
     1561 aataaaaacc tatgaaagaa gagatggtta gacatggaga gaagtatatt cggtttattt
     1621 acagcatttc tctgtgggat ttgtgttctt tgtgcgattc aagcctttcg gaagaaacgt
     1681 tttggtttag caattttatt tttactgaat gcttttacca atctggtcaa tagcattcat
     1741 gccatttacg gctttttatt tagataagag atatgaaaga ggaattacat ggctgttaag
     1801 catacacatg agtttattta ttgctcattt tgtggaaaaa atcaagaaga agtaaaaaaa
     1861 attatcgcag ggaacaatgt cttcatttgt aatgagtgcg tggaactagc acaggaaatc
     1921 attcgtgagg aactggcaga agaagttttg acagacttgg ccgacacgcc aaagccacaa
     1981 gaattgctca atattttaaa caattatgtc attgggcaag accgtgcaaa gcgtgccttg
     2041 gcagtaactg tttacaacca ctacaagcgc atcaatttcc aagatagccg tgatgagaac
     2101 gatgttgatt tgcaaaaatc aaatatcctc atgattggcc cgactggttc tggtaagact
     2161 ttcttggctc aaaccttggc caaaagtttg aatgtaccat tcgccattgc agatgcgaca
     2221 gcactaactg aggctggtta cgttggtgaa gacgtggaaa atatccttct caaacttttg
     2281 caggctgcag actttaacat cgaccgtgca gaaagaggaa ttatctatgt ggatgaaatt
     2341 gataagattg ccaaaaaagg tgaaaatgtg tccattaccc gcgatgtatc tggtgagggt
     2401 gtccagcaag ctctcctaaa aattatcgag ggaactgtgg ccagcgtacc accacaaggc
     2461 ggacgcaaac atccaaacca agaaatgatt cacgtggaca ccaaaaatat cctgtttatc
     2521 gttggcggtg catttgatgg tatcgaagaa atcgtcaaac agcgtctcgg tgaaaaaatc
     2581 atcggttttg gtcataataa tcgtgctatt gatgaaaaag aatcatacat gcaacatatc
     2641 attgcagacg atattcaaaa attcggtatc attccagagt tgattggtcg cttgcctgta
     2701 tttgcagctt tggaccaatt gacaacagag gatttggtac gcattttgac ggaaccgaag
     2761 aatgctcttg taaaacaata ccagacactc ttgtcttatg atgacgtgga gcttgacttt
     2821 gatgaggacg ccttgttagc aattgcagaa aaagcaattg aacgtaagac tggtgctcgt
     2881 ggacttcgct ccatcattga agaaacgata ttggatgtca tgtttgaggt gccaggccaa
     2941 gataacgtta aacgcgttcg tgtaacaaaa gcagcagtag acggtaaaga aaagccttta
     3001 ctagaaactg cataaaaaaa taaagggtgg aaactgattg ttttctaccc ttatttatga
     3061 aaggtataaa atggaaatca acacacataa tgctgagatt ttgctcagtg ctgtttcaaa
     3121 agcccagtat ccgggcgatg acattccaga aattgccctt gccgggcgat ctaacgttgg
     3181 aaagtcctca tttatcaata ctcttctagg aagaaaaaat cttgcacgta cgtcaggaaa
     3241 accaggaaag actcaacaac tcaattttta taatatagat gataaaattc gatttgtaga
     3301 tgttccaggt tatggctatg ctaaagtgtc caaaacagag cgcgctaagt ggggcaaaat
     3361 gattgaagag tatttgacaa cacgagaaaa tctacgtgtt gtggtgagtt tagtagacat
     3421 gcgtcatgag ccatcagcag atgatgttca aatgtatgat ttcttgaaat attatgaaat
     3481 tcctgttatt attgtggcaa cgaaggctga taaaatccca cgaggaaagt ggaataagca
     3541 cgaatcgatg attaaaaaga gattggattt tgataaaaat gatcaattcg ttatcttttc
     3601 ttccgaaact cgtcacggat acgatcaggc atgggatgct atcttaagta acatctaata
     3661 aacagttcag gagaaaaatc atggaacgta ctttcttcat catcaaacca gatgctctta
     3721 agcgtggact tgcaggacaa attctttcac gtatcgaacg caggggattt caaatccgag
     3781 atttaaaaat ggttacagcg acagaagagc taatcagtca acattatgaa taaacctttc
     3841 ttcccgcaat tagtacaata tatgacgagc gggccgatga tagctggcat tatagaaggg
     3901 ccagaagtta tcaaatcttg gcgagatatg atgggagcta ccaatccagt aaacgcccta
     3961 cctgggacta ttcgtggaga ttttgcgaca gcccccgttg agggaattgt ggcaaatgtc
     4021 gttcatggct cagatagtgc agaagcagct gaacgagaga tcggtctttg gctgggaaaa
//
LOCUS       DASFRC010000186         4064 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.186, whole genome shotgun sequence.
ACCESSION   DASFRC010000186 DASFRC010000000
VERSION     DASFRC010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4064)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4064)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4064
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.186"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            124..897
                     /gene="sufC"
                     /locus_tag="U1087_002010"
     CDS             124..897
                     /gene="sufC"
                     /locus_tag="U1087_002010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HEM4756444.1"
                     /translation="MSVLEIKDLHVEIEGKEILKGVNLTLKTGEIAAIMGPNGTGKST
                     LSAAIMGNPSYEVTQGEVLFDGVNILELEVDERARMGLFLAMQYPSEIPGITNAEFLR
                     AAMNAGKEDEDKISVRDFITKLDEKMELLNMKEEMAERYLNEGFSGGEKKRNEILQLL
                     MLEPTFALLDEIDSGLDIDALKVVSKGINAMRGEGFGAMIITHYQRLLNYITPDVVHV
                     MMEGRVVLSGGPELAQRLEKEGYVQVAAELGIDYKEDDI"
     gene            914..2176
                     /gene="sufD"
                     /locus_tag="U1087_002011"
     CDS             914..2176
                     /gene="sufD"
                     /locus_tag="U1087_002011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013989976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HEM4756445.1"
                     /translation="MTKEKIQEFSALQAEPTWLTDLRLKAFDKIAELDLPVIERVKFH
                     RWNLGDGSLATNDEIGAVPDFTAIGDNPMLVQVGSQTVLEQLPADLVEKGVVFTDFAS
                     AMDLIPDVIEKYLGVAVAYDEHKLAAYNTAYFNATAVLYVPDNVEIDQPVEALFYQDS
                     TSPVAFNKRVLIIAGKNAKLNYLERFESLGDGAVATSANIVVEVIALAGSQIKFAAID
                     RLGKHLDTYLNRRGYLGNDATIDWAIGLLNEGNVIADLDSELKGNGSHANLKVVGLSS
                     GRQVQGVDTRVTNYGHNSVGHILQHGVILESGTLTFNGIGHIVRGAKGADAQQESRVL
                     MLSDKARSDANPILLIDENEVTAGHAASIGQVDPEDMYYLMSRGLDRATAERLVVRGF
                     LGAVITEIPVKEVRDQLIAVIEEKLVKR"
     gene            2181..3404
                     /locus_tag="U1087_002012"
     CDS             2181..3404
                     /locus_tag="U1087_002012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001020754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEM4756446.1"
                     /translation="MDFERIRKDFPILDQVVNDESLVYLDNAATTQKPQQVLDVLADY
                     YQKDNANVHRGVHTLSERATARYEAARQKVADFIQAKSSKEILFTRGTTTGLNWVAQF
                     AREILQPDQEVIISVQEHHSNIIPWQQACQQTGAKLRYVTLKDGELDMDHLRSLLSSK
                     TKFVSLAHVSNVLGSVAPIGKIAELVHQVGAYLVVDGAQSVPHMAVNVQELDVDFYAF
                     SGHKMLGPTGIGVLYGKEELLNRMSPVEFGGEMIDFVYEQTATWKELPWKFEAGTPNI
                     AGAIGLGAAIDYLTEIGMDAIQAHEAELVDYVFPKLQAIPGLTIYGSQDLSKRTGVIA
                     FNLDDLHPHDVATALDYEGVAVRAGHHCAQPLLRYLQVPATVRASFYIYNTKADCDKL
                     VEAIIKTKEFFNGPI"
     gene            3391..3831
                     /locus_tag="U1087_002013"
     CDS             3391..3831
                     /locus_tag="U1087_002013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system NifU family Fe-S cluster assembly
                     protein"
                     /protein_id="HEM4756447.1"
                     /translation="MALSRLDSLYMAVVSEHSKSPRHRGSLDGVEKLELHNPTCGDVI
                     ELSVKIEKDVITDIAFDGVGCTISTASASMMTEAVLGKEISQIQELAEIFSQMVQGQE
                     DTRQKELGDASLLAGVAKFPQRIKCATLPWNALKKALERSESAD"
BASE COUNT         1119 a          907 c         1015 g         1023 t
ORIGIN      
        1 tgaatggtcg aggaatggtc gagttctttc cccactgcca aagttgagtc ttatcggtgt
       61 atctagttag cttggtcagt taatgtggtt tttgaagagg acaaaaatga aaaggagcac
      121 agcatgtcag tattagaaat caaagacctt catgtggaaa tcgaaggcaa agaaatccta
      181 aaaggcgtta atttgaccct taaaacaggt gaaattgcag ccatcatggg accgaacgga
      241 acagggaaat ccaccctttc agcagccatc atgggcaatc caagttacga agtgacccaa
      301 ggggaagttc tcttcgatgg tgttaatatt ttggagttag aagtcgatga acgtgcccgt
      361 atgggtcttt tcttggctat gcaatacccg tcggaaattc cagggatcac caatgcggaa
      421 tttcttcgtg ccgctatgaa tgctggcaag gaagacgaag acaagatttc tgtccgtgat
      481 ttcatcacca agttggatga aaaaatggaa ctcctcaaca tgaaggagga aatggcagag
      541 cgttacctca acgaaggttt ctcaggtggt gagaaaaaac gcaatgaaat cctacaactg
      601 ctcatgttag agccaacttt cgcccttctt gatgagattg actcaggatt ggatattgat
      661 gcccttaaag tcgtgtcaaa aggaatcaat gctatgcgtg gtgaaggctt cggtgccatg
      721 attattaccc actaccaacg cttgctcaac tacatcactc ctgatgttgt ccatgtcatg
      781 atggaaggtc gtgtcgtgct ttcaggcgga ccagaattgg cgcaacgctt ggaaaaagaa
      841 ggatatgtcc aagtcgcagc tgagcttggc atcgactaca aagaagatga catttaagtc
      901 tttggaggaa gttatgacca aagaaaagat tcaagaattt tcagccttgc aggcagaacc
      961 aacatggttg acagacctgc gccttaaggc ttttgacaaa atagcagagc tggacttgcc
     1021 ggttatcgag cgggtcaagt ttcaccgttg gaatttaggt gacggaagcc tagctacaaa
     1081 tgatgaaatc ggagctgtgc cagattttac agctatcggt gacaatccta tgttggtcca
     1141 agttggcagc caaacggtct tagaacaact gcccgctgac ctagtagaga aaggtgtagt
     1201 ctttactgac ttcgcatcgg ctatggatct tattccagat gttatcgaga aatatcttgg
     1261 agtagctgta gcttatgatg aacacaaatt agccgcctat aacacagctt atttcaacgc
     1321 aactgctgtc ctctacgtgc cagataatgt tgaaatcgac cagccggttg aggccctttt
     1381 ctaccaagac agcactagtc cagttgcttt taataaacgt gtcctcatca tcgctggaaa
     1441 aaatgccaag cttaattatc tagagcgatt tgaaagtctg ggtgacggag cagtagcgac
     1501 ttcagccaat attgtcgtgg aagtaatcgc ccttgctggt agccaaatca agtttgcggc
     1561 tattgaccgc cttggtaagc atttggatac ctacctcaac cgtcgcggct atcttggaaa
     1621 tgatgcaacg attgactggg cgattggtct gctcaacgaa ggaaatgtca ttgcggactt
     1681 agacagcgaa ttgaaaggaa acggtagcca tgccaacctc aaggttgttg gactatcttc
     1741 cggtcgtcag gtacaaggtg tggatacgcg cgtgaccaac tacggtcata attcagtcgg
     1801 tcacatcctg caacatgggg ttatcttaga aagtggaacc ttgaccttca atggcatcgg
     1861 acacattgtc cgcggtgcta aaggagcgga tgcccagcag gaaagccgtg tcctcatgtt
     1921 gtctgataag gctcgctcag atgctaaccc aattctcctt atcgatgaga atgaggtcac
     1981 agctggacac gcagcttcaa tcggtcaggt ggatccagaa gatatgtact acctcatgag
     2041 tcgtggcctg gaccgagcaa ctgctgaacg cttggttgtt cgcggtttcc ttggtgcagt
     2101 cattaccgaa attcctgtca aggaagttcg tgaccaactg attgccgtga ttgaagaaaa
     2161 attagtaaag agataagatg attgattttg aacgcattcg caaggatttt cccatcctag
     2221 accaagttgt taacgatgag tcgttggtct atttggacaa tgcagcgacc actcaaaaac
     2281 cgcagcaggt actagatgtg ctggcggatt attaccagaa ggacaatgcc aatgtccacc
     2341 gtggcgttca caccctgtcg gaacgggcaa ctgctcgcta cgaggcggct aggcagaagg
     2401 tggcagattt tatccaggcc aagtctagca aggaaatcct cttcaccaga gggacgacca
     2461 ctggtcttaa ttgggtagct cagtttgcta gagaaattct ccagccagac caggaagtga
     2521 taatctcggt ccaagagcac cactccaata tcatcccttg gcagcaagcc tgtcagcaaa
     2581 caggtgccaa gctccgctat gtgaccctaa aagacggcga gctagacatg gaccacctgc
     2641 ggtcgctact atcttctaag accaagtttg tctccctagc acacgtatcc aatgtcctag
     2701 gcagcgtggc tcctatcgga aaaatagcag agctggtgca tcaagtcggt gcctacttgg
     2761 tggtggacgg agcccagtca gttccccaca tggccgtcaa cgtgcaagaa ttagacgtgg
     2821 atttctatgc cttttcaggt cataaaatgt taggaccgac aggaattggc gttctctacg
     2881 gcaaggaaga attactcaat cgcatgtcgc cagttgaatt cggtggcgag atgattgact
     2941 tcgtctatga gcagacagcc acttggaagg aattgccttg gaagtttgag gcaggaacgc
     3001 ccaatattgc aggtgcgatt gggctgggag cggccattga ttacctgact gaaattggca
     3061 tggacgctat ccaggcccac gaggcagaac tggttgacta cgtctttcct aaattacagg
     3121 ctattccagg cttgacaatt tatggtagtc aggacctgtc caagcggacg ggagttattg
     3181 cctttaactt ggacgacttg catccacacg atgtggcgac cgccttggac tacgaaggtg
     3241 ttgctgtgcg ggctggccac cattgtgccc aaccgcttct cagatatttg caggtgcctg
     3301 ctactgtacg agcaagtttt tacatctaca ataccaaggc tgactgtgat aagttggtcg
     3361 aggcaatcat caagacaaag gagtttttca atggccctat ctagattaga ctctctttat
     3421 atggcagttg tgtctgaaca ctccaagtca cctcgtcatc gtgggagctt ggacggagtg
     3481 gaaaagttgg aactccacaa cccaacctgc ggcgatgtga ttgaactatc agtcaagatt
     3541 gaaaaagatg tgattaccga tattgctttt gacggcgttg ggtgtaccat ttcaaccgca
     3601 tcagcttcta tgatgactga agcagtgctt ggcaaagaaa tcagtcagat tcaagaacta
     3661 gcagaaatct tctcacaaat ggtccaaggc caagaagaca cacgccagaa ggaactaggg
     3721 gacgcctccc tcctcgcagg tgtcgccaaa ttcccccaac gcatcaagtg tgccacatta
     3781 ccgtggaatg ccctgaagaa agcactggaa cgaagtgaaa gtgctgactg aagggtaact
     3841 gcgacatgag cgattttggt cgataatacc aaaatcagcg aattagtaag ccgcttagca
     3901 aggttgatta gaaccttgcg ttacttggtt aggaacttta gttccaacca agtttagtgt
     3961 cttgaagaaa gcaatcgaac gcagtgagag tgctgaatga gcatcaatat agtcatttag
     4021 tttttctttt attacttcgt taactcgctt tgccgtactc cagt
//
LOCUS       DASFRC010000187         3967 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.187, whole genome shotgun sequence.
ACCESSION   DASFRC010000187 DASFRC010000000
VERSION     DASFRC010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3967)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3967)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3967
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.187"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..327
                     /locus_tag="U1087_002014"
     CDS             <1..327
                     /locus_tag="U1087_002014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEM4756448.1"
                     /translation="VHGVDLKRKDNALSVKALKHGQDMEILIRDNGKGMNAETLEAYK
                     HLLASRELSQENRSQSIGLRNVHERLLLYFGDRYQIELDSKEGEGVTYSILFEGVFPR
                     GDEHDA"
     gene            317..1609
                     /locus_tag="U1087_002015"
     CDS             317..1609
                     /locus_tag="U1087_002015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM4756449.1"
                     /translation="MMHKMLVVDDEYMILEGMKHLLPYHEYNVEIVYTAENAEEALDY
                     FSQHTVDLVLTDVSMPDMTGLEMVRRMKEQSPDTHIIIMSGFQEFEYARKAISLGAMD
                     YLLKPINKQELAKLLQQLPTLKKETDREYTKGFLAGTLTASELLRHSQKTWFAARETP
                     NPMGYCREKNILHQVYYFQLTESRPEGSLYTEEVTPTMTIRQLIDKVERRLFYKQLSE
                     DLTATTTELYKDMEPLLRAGRLAKIVDVLPHLADKLREATPAVYLTKQFFNQMMSDVF
                     YYFNEEDHQRLEDFYVKVEASRDLHQLLDYFSHYLKKFSESSTYSPHVQEVVTIVRER
                     FAEELSLKDMSAHLYLNTVYLGQLIKKETGHTFAELLNHQRIKVAQQLLLNSQLGIEE
                     ICFQVGYTNVGYFYKIFKRICGESPKNYRQKIGQLQTE"
     gene            1622..2482
                     /locus_tag="U1087_002016"
     CDS             1622..2482
                     /locus_tag="U1087_002016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM4756450.1"
                     /translation="MSKREELQHLFPKGRLVFEKTENGASIQLPLADQTWFSVDRKDL
                     TDREIELIDLLMNDSSAEQGHPWGRYFQGGGPLPQTLEKLQVIHAHVGHVSDEDGKVA
                     WLDMMAKLLPNLQGYYTGNGQDYLFILHQAPLFDVKEILRDTLATMEFDFGLRITLFL
                     GQIWPAKLVHSWPQLIEAEQSLFHHWRSSHHQSRLLTFGQLYLWAGQLHPVLREGLAS
                     LIAHQQLEKEIVALWQEGAVITKAAQSLYIHRNTLQYRLDKWFDWTGLQLKELTDLAV
                     CYMVIMDLSI"
     gene            2718..3848
                     /gene="ugpC"
                     /locus_tag="U1087_002017"
     CDS             2718..3848
                     /gene="ugpC"
                     /locus_tag="U1087_002017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     ATP-binding protein UgpC"
                     /protein_id="HEM4756451.1"
                     /translation="MVQLNLKNIYKKYPNSEHYSVEDFNLDIKDKEFIVFVGPSGCGK
                     STTLRMIAGLEDITEGEAYIDGVLMNDVAPKDRDIAMVFQNYALYPHMTVFDNMAFGL
                     KLRKYSKDEIKKRVEEAAQILGLTEFLERKPADLSGGQRQRVAMGRAIVRDAKVFLMD
                     EPLSNLDAKLRVSMRTEIAKIHRRIGATTIYVTHDQTEAMTLADRIVIMSATKNPAGT
                     GTIGRIEQIGSPEELYNRPVNKFVASFIGSPAMNFFTVTLQDGVLVGDGFKVELPEGR
                     RKHLEEKGYNGKSFTLGIRPEDIKASQLELDTYPSSIVEAEVVVSELLGAETMLYSKV
                     GSTEFVSRVDARDYHNPGDKVRLTFNLNKAHFFDDETSKAIV"
BASE COUNT         1224 a          825 c          868 g         1050 t
ORIGIN      
        1 gtccatggag tagacctcaa acgaaaagac aatgcgctta gtgtcaaagc tctcaagcat
       61 ggacaggata tggaaattct catcagagat aatggtaagg gaatgaacgc agaaactctg
      121 gaagcctaca aacacctctt ggcaagtcga gaactgtcgc aagaaaatcg gtcacaatca
      181 atcggattac gaaacgttca tgagcggtta cttctctatt ttggagaccg ttaccagata
      241 gaattagatt ctaaagaagg ggaaggggtg acatattcaa tcttatttga aggtgtcttc
      301 ccccgaggag atgagcatga tgcataagat gttagtagtt gatgacgaat atatgatttt
      361 ggaagggatg aagcatcttc tcccttatca tgaatacaat gtcgagattg tttatacggc
      421 agagaatgcc gaagaagcgc tggattattt ttcacagcat actgtggacc ttgtcctaac
      481 cgatgtcagc atgccagata tgacaggcct agaaatggtt cggcgaatga aagaacaatc
      541 gcctgatact cacattatca tcatgtctgg ttttcaagaa ttcgaatatg cccgtaaagc
      601 tatctctcta ggggcaatgg attatctcct taagcccatc aataaacaag aactggctaa
      661 gctgctccaa cagctaccaa ccttgaagaa agagacagat agggaatata ccaagggctt
      721 cttggcagga accctgacag cgagtgagtt attacgtcac tcccagaaaa catggtttgc
      781 cgctagagag actccaaacc caatgggcta ctgtcgtgaa aaaaatattt tacaccaagt
      841 ctactatttt cagttgacag aaagtcgacc agagggtagt ctatatacag aagaagttac
      901 cccgacgatg accatacggc agttgattga caaggtagag aggcgcttat tttataagca
      961 actatcagaa gatctaacgg ctactaccac agagctctat aaagatatgg aaccgcttct
     1021 acgtgcagga agattggcaa aaatcgttga tgttttacca catttggctg ataaattacg
     1081 agaagccact ccggcagtct acctaacaaa acaatttttt aatcagatga tgtcggatgt
     1141 gttttactat tttaatgaag aagaccatca gcgcttggaa gatttctatg taaaggtaga
     1201 agcgagtcga gatttacatc aactattgga ttattttagt cattatctga aaaaattttc
     1261 cgagagttcc acttacagtc cacatgtaca ggaagtcgtt acgattgttc gtgaacgctt
     1321 tgcagaggaa ctgtctttga aagatatgag tgctcatctc tacctaaata cggtttacct
     1381 aggtcaactt atcaaaaaag agaccgggca tacttttgca gaactgctca atcaccagcg
     1441 aatcaaggta gcacaacagc ttctcttgaa cagtcagttg ggaatcgaag aaatttgttt
     1501 ccaagttgga tatacaaatg tcggttactt ctataagatt tttaaacgca tttgtgggga
     1561 atctcccaaa aattatcgac agaaaatcgg tcaattacag acagaatgag atggaggcga
     1621 gatgagcaaa agggaagaat tgcagcacct atttccaaaa ggaaggcttg tatttgaaaa
     1681 gacagaaaac ggagcaagta tccagttgcc tctggctgat caaacctggt tttccgtcga
     1741 tcgcaaggat ttgacagatc gagaaatcga actgattgac ttgctgatga atgactcgag
     1801 cgcagaacaa ggtcatcctt ggggacgcta tttccaaggg ggaggtcctc ttccacaaac
     1861 cttggaaaaa ctacaggtta ttcatgctca tgtaggccac gtatccgatg aagatggaaa
     1921 ggtagcctgg cttgatatga tggccaaact cctccccaat ctccaaggct actatacagg
     1981 caatggacag gattacctgt tcattctaca tcaggcacct ctttttgatg tcaaagaaat
     2041 actgcgtgac acccttgcta ccatggagtt cgattttggt ctgagaatca cattgttttt
     2101 agggcaaatc tggccagcca aattggtaca ctcttggccg caattaatcg aagctgaaca
     2161 atcccttttt caccattggc gaagcagcca ccatcaatca cggttgctta ccttcggtca
     2221 gctctatctt tgggcaggtc aactccaccc cgttttgaga gaaggacttg ctagtttgat
     2281 tgcccaccag cagctagaaa aggaaattgt agctctttgg caagaaggtg cggtcataac
     2341 caaggcagcc cagtctctct atatccatcg aaatacgcta cagtatcgct tggacaaatg
     2401 gtttgattgg acgggattac agctcaagga attgacggat ttggcagttt gctacatggt
     2461 tatcatggat ttaagtatct aataggagct aatgatgaga aaagcgttgt agcctttgag
     2521 aatgccaccc atcgcttcgt cccttttcta ctgaaaatcc caaagggctc attgaatttt
     2581 tggaaagtaa actatttcag taacacagtc ttttgtgcaa cttgtacaaa agattgtgtt
     2641 ctttttgttc accttgacct agaaaaataa agcgttttca tttacaataa aactatcaaa
     2701 gaaagcgagg attgaacatg gttcaattga atttaaaaaa tatctataaa aaatatccaa
     2761 acagcgagca ctactctgtt gaagacttta acttggacat caaggacaag gagtttatcg
     2821 tatttgtagg tccttcagga tgtggtaaat caacaactct tcgtatgatt gctggtttgg
     2881 aagatatcac agaaggggaa gcatacatcg acggcgttct catgaatgat gtggctccaa
     2941 aagaccgcga cattgccatg gtattccaga actatgccct ctacccacac atgactgtat
     3001 ttgacaacat ggcctttggt ttgaaattgc gtaaatacag caaggacgaa atcaaaaaac
     3061 gtgtagaaga agctgctcaa attcttggtt tgacagaatt cttagaacgt aaaccagctg
     3121 acctttcagg tggacaacgc caacgtgttg ccatgggtcg tgccatcgtt cgtgatgcaa
     3181 aagtattctt gatggatgaa cctttgtcaa acttggatgc aaaactgcgt gtatccatgc
     3241 gtacagagat tgctaaaatc caccgccgta tcggtgcgac aaccatctat gtaacccacg
     3301 accaaacaga agctatgacc ttggcagacc gtatcgttat catgtctgca actaaaaacc
     3361 cagcaggcac aggtacaatc ggtcgtatcg agcaaatcgg tagcccagaa gagctctaca
     3421 accgccctgt taacaagttt gttgctagct tcatcggtag cccagctatg aacttcttca
     3481 cagttacgct tcaagatggc gttcttgttg gagatggttt caaggtggag cttccagaag
     3541 gacgtcgcaa acacttggaa gaaaaaggct ataatggcaa atcatttacc ctcggtatcc
     3601 gtccagaaga catcaaggct tctcagttgg aattggacac ttatccatct tccatcgtag
     3661 aagcagaagt ggttgtatcg gagcttctcg gtgcagaaac catgctctac tctaaagtag
     3721 gtagcacaga gtttgtatct cgcgttgatg cacgcgacta ccacaaccca ggagacaaag
     3781 ttcgcttgac cttcaacctc aacaaagctc atttctttga tgatgaaaca agcaaggcga
     3841 ttgtctaacc tttctaaaat cgttcataaa acacctgacc gctagatgaa aatctggcgg
     3901 ttttttgggg ttaagaacgc ataaatactt gttattttta ttaaagaggc tgggcaaaaa
     3961 gcccagt
//
LOCUS       DASFRC010000188         3942 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.188, whole genome shotgun sequence.
ACCESSION   DASFRC010000188 DASFRC010000000
VERSION     DASFRC010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3942)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3942)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3942
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.188"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            421..1443
                     /locus_tag="U1087_002018"
     CDS             421..1443
                     /locus_tag="U1087_002018"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014834898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HEM4756452.1"
                     /translation="MKVSIVGVTGYSGLELVRILKSHPHVNVVSIYATKEVGQDISNI
                     FPHLENVSDLQVTAFDAEKIMEESELVFFATPSGIAKDYAEDFIQAGFPLIDLSGDHR
                     LPSSDYQKWYQRTPAKDEVIESFAYGLSEFADVKGKKFIANPGCYATATELALIPLLA
                     AKIVDVNSIIIDAKSGLSGAGKNPNASSHFVHVNANYVTYKLNQHQHIPEIVQTLQGF
                     DASLNYIQFSTSLLPVNRGIVATCYLKLTKELTNQDIESIYQGAYAHKPFVRVKAQIP
                     SLSQVIGSNYTDIGFDYNPVTKVLTVVAVLDNLVKGAAGQAVQNMNLMFGFEETTGLL
                     AAPAFI"
     gene            1456..2649
                     /gene="argJ"
                     /locus_tag="U1087_002019"
     CDS             1456..2649
                     /gene="argJ"
                     /locus_tag="U1087_002019"
                     /EC_number="2.3.1.1"
                     /EC_number="2.3.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011225582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate
                     N-acetyltransferase/amino-acid acetyltransferase ArgJ"
                     /protein_id="HEM4756453.1"
                     /translation="MKIISGNIASPLGFSADGLFAGFKKKKMDFGWIVSEVPASVAGV
                     YTTNKVVAAPLLVTKEVITQNGKMQAMVVNSGVANSCTGQRGMDDARTMQELTAKKLG
                     IDKNLVGIASTGVIGEFLPLDKLENGLSRIVVNGNADDFAKAILTTDTITKSITVQET
                     FGKDLVTMSGVAKGSGMIHPNMATMLAFITCDAVISSQTLQKALSTLVETSFNQITVD
                     GDTSTNDMVVVLANGCSLNKEIVEGTKEYDRFLAMLDLVMTELAKKIARDGEGASKLI
                     QVDVSGASDGLAARMVAKSIVGSSLVKTAIFGEDANWGRIIAAIGYAGVDIDVDHIDI
                     ALEGIPVMTQSSPVEFDQEEMAEIMQKDTITINVNLHMGPASGRAWGCDLSYDYVKIN
                     ALYRT"
     gene            2659..3393
                     /gene="argB"
                     /locus_tag="U1087_002020"
     CDS             2659..3393
                     /gene="argB"
                     /locus_tag="U1087_002020"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HEM4756454.1"
                     /translation="MENFIVIKIGGVASKQLSQGFMKQIKNWKQAGKQVIIVHGGGFA
                     INKLMEERQLAVEKVDGLRVTSHEVMKLVAFGLLEQVGKDIVASLNAAGCDCLQLRAN
                     LGKVIQAGFLDKKKYGYVGNVTGIHTAYLEELLQEGLTPVLASMGGKDDELLNINADY
                     VATALAIALKAERLILMTDVPGVKEDGQVISQLSTKQAQEKIRSGVITGGMVPKIKGA
                     SETVEAGVQTVLISDNLVKGTLIHLT"
     gene            3405..3824
                     /locus_tag="U1087_002021"
                     /pseudo
     CDS             3405..3824
                     /locus_tag="U1087_002021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013642872.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
BASE COUNT         1177 a          669 c          960 g         1136 t
ORIGIN      
        1 atacaatagc ctgagttgcc ttgagcaagc acaaaaaaca ccctcgtcgg cagccgtggg
       61 tgttttctct atgcttgtat ttcctgaact tgtaatcaac tttggtataa cacattctat
      121 cgaagttatc acttgaaagc aaaatagtta ttacagcctt tttaactctt tcattgggtc
      181 gttctagggt aatcttgatt ttattttcaa tggggctagg atactgtaaa tgtatcaaaa
      241 cacatggagc ttgttttaga ttgataggga gactgcatga attttctata tttttcaatc
      301 aaatgttccg aaattgaata atattacatt gtttttgaaa taatatgcag aaatgacttg
      361 acattttatc catagtagag taaactatgt tgaataaaaa tactaaaaag gtgaataaaa
      421 atgaaagtat ctattgtagg agttactggt tatagtggat tagagctggt taggatattg
      481 aaaagtcatc ctcatgtaaa tgtagtgtct atttatgcga ctaaagaagt tgggcaggat
      541 atttcgaata tttttccaca tttagagaat gtaagtgatt tgcaggtgac tgcatttgat
      601 gcagagaaaa tcatggagga gtccgagtta gtcttctttg caacaccgag tggtatagct
      661 aaggattacg ctgaagactt tattcaggcg ggctttccgc tcattgattt atctggggac
      721 catcgtctac ccagctcaga ttatcaaaaa tggtatcaga gaacaccggc aaaagatgag
      781 gtgattgaat cctttgcata tggtttatca gaatttgcag atgtgaaggg gaaaaaattt
      841 attgcaaatc caggttgtta tgcaacggca actgaattgg cgctcattcc tctcttggca
      901 gctaaaatag ttgatgtaaa ttccatcatc attgatgcga agagtggtct gagcggagct
      961 ggaaaaaatc caaatgcgag cagtcacttt gtacatgtca atgccaatta tgtgacctac
     1021 aagctcaatc agcaccagca tattcctgaa attgttcaaa ccttacaggg atttgatgcc
     1081 agtcttaact atatccagtt ttcaacttcc ttgctacccg tcaatcgtgg catcgttgcc
     1141 acttgttatc tcaaactgac aaaggagttg accaatcaag atattgagtc tatctatcaa
     1201 ggtgcctatg cacataaacc atttgttcgt gtcaaggcac aaattcccag cctaagtcaa
     1261 gtgattggtt caaattatac ggatatcggt tttgattaca atccagttac gaaggtactg
     1321 acagttgtag ctgttttgga caatttagtc aagggagctg cgggccaggc agttcaaaat
     1381 atgaacctga tgtttgggtt tgaagagact actgggctct tggcagcacc agcatttatt
     1441 taaaaggaga ataagatgaa gataatatca ggaaatattg ctagtccact tggcttttca
     1501 gctgatggct tgtttgcagg attcaaaaag aagaagatgg attttggttg gattgtatca
     1561 gaggttccag ccagtgtggc gggtgtctat actaccaata aggtcgttgc agctccactt
     1621 ttagtgacca aagaggtaat tacgcaaaat ggaaagatgc aggctatggt cgttaattca
     1681 ggagtggcca actcttgtac aggtcaaagg ggaatggatg atgccagaac catgcaggaa
     1741 ctaacggcta aaaaattggg tattgataag aatctggtag gtattgcttc aacaggggta
     1801 atcggtgaat ttttaccact tgataagttg gagaatggct tgtctaggat cgtggtaaat
     1861 ggaaatgcag atgattttgc caaggctatt ttgacgaccg atacgatcac caaatccatt
     1921 accgttcaag agactttcgg aaaggatctt gttaccatgt ctggtgttgc taagggttca
     1981 ggaatgattc accccaatat ggcgactatg ttggctttta tcacctgtga tgcggtcatt
     2041 tctagtcaaa ccctgcaaaa ggcactcagt acactggttg agactagttt caatcagatt
     2101 acagtggatg gggatacttc tacaaatgat atggttgtgg tcctagccaa cggttgtagt
     2161 ctcaataaag aaattgttga ggggactaaa gagtatgacc gtttccttgc catgttggac
     2221 cttgtcatga cagaacttgc taaaaaaatt gccagggatg gagagggggc gtccaaatta
     2281 atccaggtgg atgtgtctgg cgcctctgat ggtctggcgg caagaatggt agcaaaaagt
     2341 attgttggat ccagtttggt caaaacggct atctttggtg aagatgccaa ctggggaagg
     2401 attattgcag ctatcggcta tgcgggtgtg gacattgatg tggaccacat tgatattgcc
     2461 ctggagggga ttccagttat gactcagtcc agtccggtcg aatttgacca ggaagaaatg
     2521 gctgaaatta tgcaaaagga taccattaca atcaatgtca atctccatat gggaccagca
     2581 agtggtcggg catgggggtg tgatctatca tatgattatg tgaaaattaa cgctttgtat
     2641 agaacatagg agttcggtat ggaaaatttc attgtcataa aaataggtgg agtggccagt
     2701 aaacagttgt cacaaggctt tatgaaacaa atcaaaaatt ggaaacaggc gggaaaacag
     2761 gtcatcattg tccatggagg cggttttgca atcaataagt taatggaaga gcgacagcta
     2821 gctgtcgaga aagtggatgg gttgcgcgtg actagtcatg aagtgatgaa actggttgcc
     2881 tttggtctgc ttgagcaggt agggaaggat atagtggcaa gcttgaacgc agctggctgt
     2941 gattgtttgc agcttcgtgc aaatctggga aaggttattc aggctggttt tttagacaag
     3001 aagaaatatg gctatgtggg aaatgtcacg ggtattcata ctgcctattt agaagaactt
     3061 ttacaggaag gattgactcc agttcttgct tccatgggtg gaaaagatga tgagttactt
     3121 aatatcaacg ctgactatgt cgcaacagct ttggcaattg ctctgaaagc tgaacgtttg
     3181 attttgatga cggacgtccc aggtgtgaag gaagatgggc aagttatctc tcagcttagt
     3241 accaaacaag cacaagaaaa gattcgttca ggggttatca caggaggtat ggtaccaaaa
     3301 atcaagggag ctagcgagac tgtggaagca ggtgtacaaa cggtccttat cagtgacaat
     3361 cttgtcaagg gaaccttgat tcatttaacc taggaggttg ctacatgagt aagttatttc
     3421 aaaattacaa gcgagatgcc attgaatttg tcagggcggt aggcaatacg ttggtcgatc
     3481 aagatggcaa tgtctatctg gacttttcat ctggaatcgg tgtgaccaat cttggctttc
     3541 atcctctagt caagcaagcg gtggaaaaac aattagaaga gatttggcat agtcccaatc
     3601 tctatcaaaa tagcctgcag gaagaagtcg ccgagctctt aattggagaa aaagattacc
     3661 ttgccttttt ctgtaattcg ggtgctgaga gcaatgaagc ggctataaaa ttagcaagaa
     3721 aagcaagtgg gaaatctgat attatctgct tcaaacagtc cttccatggt cgtacctatg
     3781 gggccatgtc agcgacaggt caagaaaaaa ttcagcttgg ctttgcccca atgtcattaa
     3841 gttaagcatt taagcagcta aagaaactat tcccgtccga gtaattgatg gcaaaacggg
     3901 aatagttttt gtatttaggg ggcacaaaag gaaggatttt tt
//
LOCUS       DASFRC010000189         3917 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.189, whole genome shotgun sequence.
ACCESSION   DASFRC010000189 DASFRC010000000
VERSION     DASFRC010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3917)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3917)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3917
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.189"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(6..1007)
                     /locus_tag="U1087_002022"
     CDS             complement(6..1007)
                     /locus_tag="U1087_002022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEM4756455.1"
                     /translation="MIRHHNYLKIFTFLLILLFVIFLLSLSIGYSNSSFSDLIDIMSG
                     RASSSTLLIIGRIRLPRIIASIIGGASLALAGLLLQTLTRNPLADSGILGINAGAGLV
                     VALFVGLSSKISPVLLSLMPLFAMMGGGLTIFLVYWIARKKLYGIHPARLIITGVGIS
                     SMLSGIMVSIISQLDDFKMEYIVQWLSGRVNGGDWKTIAIYTPLLLLVWMATFSRSRS
                     LNIMNLNDQTAMALGLHLQRERRITLVLATALASLSVILVGNITFVGLIAGHIVRKWL
                     ENDHRVIIPATMIIGSFILLLADTIGRVLLVGTGIPTGIIVSLIGAPYFLWLLKQEG"
     gene            complement(1004..2029)
                     /locus_tag="U1087_002023"
     CDS             complement(1004..2029)
                     /locus_tag="U1087_002023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEM4756456.1"
                     /translation="MNKLVSSRYPKTKPKNIWLVFFIICLSFIAGVYLSLRFGAVSYS
                     HQQLIETLTHPLTDSSAQDVIIDLRLPRMVAAILVGAAMAQAGAMMQGITRNPIADPG
                     LLGINAGAGLALIVAYALFGGLHYSQILLICLLGSCLAAGLVFGLAYQVQKGYNQLRL
                     ILSGAMVASLFSAIGQAITIYFDLSTAVIGWQAGGLVQVNWKMLAIIAPLIIIGLILA
                     QLFSHQLTILSLNETVAKNLGQRTLLMTLVLLGIVLLLSASAVALVGSLSFIGLIIPH
                     FIRMFTGKNYKLLLPLTAFAGASFLIWVDLVCRSINPPVETPISAVISIIGLPCFLWL
                     IRKEKHF"
     gene            complement(2043..2972)
                     /locus_tag="U1087_002024"
     CDS             complement(2043..2972)
                     /locus_tag="U1087_002024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM4756457.1"
                     /translation="MKKFLAIFSLFVGLFFLTACSTSSSSTDVELSSMPKIEGITYHG
                     DIPKNPKKVVNFAYSYTGYLLQLGIDVSSYSLDLEKNSPVFGDKLKDVPQLTTADTEA
                     IAAQKPDVILVFAGDDNLETLKEIAPVIEITYGKSDYLKMLTDIGQIFGKEKEAQAWL
                     DQWDKKVATAKEELKGLIDTSSTFTVMDFFDKNIFLYGNNFGRGGELIYRALGFAAPA
                     KVQEDIINKEGWFGVSQEALPEYVGDYVLVNVNDKTKEAAASLKESDIWKNLPAVKNG
                     HVIEIDYNLFYFSDPMSLDLQIDAFVSEIQKLQ"
     gene            complement(2985..3770)
                     /locus_tag="U1087_002025"
     CDS             complement(2985..3770)
                     /locus_tag="U1087_002025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019774490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4756458.1"
                     /translation="MSSIQAENIQVSYDNRIIIDELSTSIPKGSITTIIGANGCGKST
                     LLKALTRIIPVQEGAIYLDGQAISQLPTKEVAKKLALLPQVLEATEGISVYELVSYGR
                     FPHQNGLGHLTDQDREKINWALEVTQTAPYARLPVDDLSGGQRQRVWIAMALAQDTDT
                     IFLDEPTTYLDLNHQLEVLELLKELNQSRQKTIVMVLHDVNLSARFSDYMIAMKEGDI
                     RYHGSVSNMMTTEILRDIFSIEPQLMQVAGQDYPILLTYDLKK"
BASE COUNT         1216 a          804 c          818 g         1079 t
ORIGIN      
        1 gtcatctagc cttcttgctt tagtaaccac agaaaatagg gagcgccgat aagtgagacg
       61 atgatgccgg ttgggatgcc tgttccgaca agtagtaccc gtcctatggt atccgctaga
      121 agtagaatga agcttcctat tatcatagta gctggaatga tgacacgatg gtcattttct
      181 aaccatttgc gcacaatgtg accagcaatg agaccaacga aggtgatatt accaactaaa
      241 atgacactaa gagaggctag ggcggtagct aataccaagg taatccgcct ttcacgctgt
      301 aagtggagtc ccaaagccat ggctgtctgg tcgtttagat tcataatatt gagtgagcga
      361 cttcgactaa atgttgccat ccacaccaat agaagaagag gagtatagat tgcgatagtt
      421 ttccaatctc caccatttac tcgaccgctg agccactgga caatgtattc catcttaaag
      481 tcatctaatt ggctgatgat gctgaccatg ataccagaca gcatgctcga aattccaact
      541 cccgtgataa ttaagcgtgc aggatggatg ccgtacagct tcttacgtgc aatccagtaa
      601 actagaaaaa tggttaatcc accgcccatc atagcaaata gaggcatgag actcaataag
      661 acagggctga tttttgaaga gagaccgaca aatagtgcca caacaagacc agctcctgcg
      721 ttgattccta atattccaga atctgccaga ggattgcggg tcaaagtttg tagcaacaaa
      781 cccgccaaag ccagagaagc ccctccgata atggaggcga ttattctagg taagcgaatt
      841 cgcccaatga tcagtagagt cgatgaactg gcacgcccac tcatgatgtc gatgagatct
      901 gaaaaggatg aattgctata gccgatagat aaggaaagta ggaaaatgac aaataaaagg
      961 atcagcagga atgtgaatat ttttagatag ttgtgatgtc ttatcaaaag tgtttctcct
     1021 ttctaatcaa ccataggaag caagggagac caatgatact gatgactgcg ctaatgggag
     1081 tttcaacagg tggattgata gaacggcaaa ccaaatctac ccagatgagg aaactagccc
     1141 ctgcaaaggc agttaatggc aagagtagct tgtaattttt ccctgtaaac atgcggataa
     1201 agtgaggaat aatgagcccg ataaaagaaa gcgagcccac aagagctacc gcagaagctg
     1261 agagtagaag gacaattccc aacaaaacca aggtcatcag tagggttcgt tgacctagat
     1321 ttttagcaac ggtttcgttg agactcagga tggtcagctg atgcgaaaag agttgagcaa
     1381 ggatgaggcc aatgatgata agaggagcga tgatggccag catcttccag tttacctgta
     1441 ccaatccccc tgcttgccag ccaatcactg cagttgataa atcaaagtag atagtaatag
     1501 cctgaccaat agcagaaaat agacttgcta ccatggcgcc agataaaatt aaacgtagtt
     1561 gattgtagcc tttttgcacc tgataagcta gaccaaagac tagaccggct gccagacagg
     1621 agcccagtaa acatattaat aaaatttgac tgtagtgcaa accaccgaac agagcatagg
     1681 caacaatgag agcaagtcct gctccagcat tgattcctaa taagccagga tcggcgatcg
     1741 gattgcgtgt aattccttgc atcattgccc cagcttgggc catggcagct cccaccaaga
     1801 tggcggctac cattctaggc aagcgcaaat cgatgataac atcctgagcg gaagaatctg
     1861 tcagtggatg cgttagggtt tctatcagtt gttggtggct ataagaaaca gctccaaagc
     1921 gtaaactaag atagactcca gctatgaaag aaagacagat gatgaaaaaa acaagccaaa
     1981 tattctttgg ctttgttttg ggataacgag aacttactag tttgttcata tatccagtcc
     2041 ttttactgaa gtttttgaat ttctgagaca aaggcgtcaa tttgtaaatc taaagacatc
     2101 ggatcggaga agtagaagag gttatagtct atctcgatga cgtgaccatt ctttacagca
     2161 ggtagatttt tccaaatatc actttctttg agagaggcag ctgcttcttt tgttttatca
     2221 ttgacgttaa caaggacata gtcgccaaca tattctggaa gagcttcttg agatacccca
     2281 aaccagcctt ctttattgat gatgtcttct tgaacctttg caggagcggc aaaaccgaga
     2341 gcgcgataga ttaattctcc accacgacca aagttattac cataaaggaa gatattctta
     2401 tcgaagaagt ccatgacggt aaatgttgaa cttgtatcaa tcaatccttt caattcctct
     2461 ttcgcagtag caactttctt atcccattga tctaaccagg cttgtgcttc cttttctttt
     2521 ccaaaaatct gaccaatatc tgtcagcatt ttcaagtagt cactctttcc ataagtgatt
     2581 tcaataactg gagcaatttc tttcagtgtt tctaagttat catcaccagc aaatactaga
     2641 atgacatctg gcttttgtgc ggcaatcgct tctgtatctg ccgttgtcaa ttgtggaaca
     2701 tcctttagtt tgtctccaaa gacgggacta tttttctcta aatctagact atagctagat
     2761 acatcaattc ctaattgtaa aagatagcct gtgtaagagt aagcaaagtt gacaactttt
     2821 ttaggatttt taggaatgtc accgtggtaa gtaattcctt caatctttgg catgctagac
     2881 aattctacgt ctgttgaaga ggaagaggta gaacaagctg ttaagaaaaa cagcccaaca
     2941 aataaactaa aaatagctaa aaactttttc attttttctc cttattattt ttttaaatcg
     3001 taagttagca aaatagggta gtcttgacca gcaacctgca ttaattgagg ttcaatgcta
     3061 aaaatgtccc tcagtatctc agttgtcatc atattggaca cagacccatg gtagcgaata
     3121 tctccctctt tcatggcaat catataatct gaaaatcgag ctgataaatt gacatcgtga
     3181 aggaccatca caatggtttt ctgtcggctt tgattcagtt cttttaaaag ttctaagact
     3241 tccaattgat gattgagatc aagataggtt gttggttcat ctaagaaaat ggtatccgta
     3301 tcttgggcaa gtgccatcgc aatccaaaca cgttgcctct gaccacctga taaatcatca
     3361 actggtaacc tagcgtaggg agcggtctgg gtgacttcca aggcccagtt gattttctct
     3421 ctatcctgat cagtgagatg ccccagccca ttttgatgcg gaaagcgacc ataggagacc
     3481 agttcataaa cggaaatccc ttctgtcgct tctaagacct gagggagcag ggccaatttt
     3541 tttgcaactt ctttggttgg tagttgtgaa atggcttgtc catctaaata gatagcccct
     3601 tcttgaacag ggataatcct tgtcaacgcc ttaagcaagg tcgattttcc acagccattg
     3661 gcaccaatga tcgtcgttat acttcctttt ggaatacttg ttgataattc atcaataata
     3721 atccgattgt cgtaagagac ttggatgttt tccgcttgaa tcgaagacac aaactcctcc
     3781 ttaccagaat atgattcatt aataatttgt tccgaccagt attatatcaa aaaaatttac
     3841 caaaacaaag agttttctga aaattttaat ttaatgagaa tcgttataaa aaagggagtg
     3901 ggaaagaact catccat
//
LOCUS       DASFRC010000190         3872 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.190, whole genome shotgun sequence.
ACCESSION   DASFRC010000190 DASFRC010000000
VERSION     DASFRC010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3872)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3872)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3872
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.190"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(97..384)
                     /locus_tag="U1087_002026"
     CDS             complement(97..384)
                     /locus_tag="U1087_002026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1905 domain-containing protein"
                     /protein_id="HEM4756459.1"
                     /translation="MSKVYEFEATIHSVPDKGGAYVIFPYDIREEFGKGRVKVHATFD
                     EHPYDGSIVNMGVKDEAGNICYIIGVQKAIRVAIGKQAGDRVQVTIQERME"
     gene            complement(393..1046)
                     /locus_tag="U1087_002027"
     CDS             complement(393..1046)
                     /locus_tag="U1087_002027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009754918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA alkylation repair protein"
                     /protein_id="HEM4756460.1"
                     /translation="MDIVELEKRLLALAEKEQAQPMKAYMKNNFEFLGVRTPDRRKVA
                     KQFFKDFKAQGINWDFVEACWASPYREFQYIAIDYLVTKKKDLVLADLPRLKKLAQTK
                     SWWDSIDGLDKLVGKIVMDNPEAKQTILEWSLDDDFWLRRIAIDHQLLQKEKTDTELL
                     EKIIINNLNQTEFFINKAIGWSLRDYSKTNPDWVRDFLDKYSSQMAGLSIREASKYI"
     gene            complement(1048..1545)
                     /locus_tag="U1087_002028"
     CDS             complement(1048..1545)
                     /locus_tag="U1087_002028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HEM4756461.1"
                     /translation="MIDIRSARIEDAADLVAIYAPYVEKTAITFETEVPTVEAFASRI
                     EKTLEKFPYLVAVEEGKIVGYAYASTYYARAAYDWTVEFSVYVQKEARGKGIGNLLYT
                     ALEEELTARGFKNFLACIALPNPASIALHEKKGYQQVAHFKKVGYKFGTWHDIVWLQK
                     SLVGD"
     gene            complement(1546..2163)
                     /locus_tag="U1087_002029"
     CDS             complement(1546..2163)
                     /locus_tag="U1087_002029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5052 family protein"
                     /protein_id="HEM4756462.1"
                     /translation="MKWNKKLALVAVLVTSLVTLSACQSISNWWKNTKEEWIGLEMTV
                     RTYDENSQLIDEMSGRSLSISRNQEFDSVDAEGYSNADSSVLKVTLGNYEIDHVGSSL
                     IAAEEGLEDLYAKYQTTVDIANYDRAIPLVNHMVSSLKNDFTGKAKVVLIRSQNGTPL
                     ATYVGDKVSLYASDAPKTSELLIDGKRLIIYRCDYTIYDRELLEN"
     gene            complement(2332..2629)
                     /locus_tag="U1087_002030"
                     /pseudo
     CDS             complement(2332..2629)
                     /locus_tag="U1087_002030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018030341.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="STAS-like domain-containing protein"
     gene            complement(2719..3807)
                     /locus_tag="U1087_002031"
     CDS             complement(2719..3807)
                     /locus_tag="U1087_002031"
                     /inference="COORDINATES: protein
                     motif:HMM:NF024700.1,HMM:NF025844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4435 domain-containing protein"
                     /protein_id="HEM4756463.1"
                     /translation="MNGTIEAEKFSRYSINSLSDGEKSALFYISCAVLAKENTVFVID
                     EPETHLNIAICNKLWDLILDYRQDCKFVFVSHNSDFISGRVNPRIVWCKKYVNNTDFD
                     LQPLNNLEVDFSRQLLIELVGSRKPILFCEGTIESIDYQLFNILYSDRYLIKPVGGHF
                     DVVNNVRALNKLTPQGIEGIGVIDRDFHTVEKLEKYKNEKIFSIPVNEIEMLLMHESV
                     VRAVLDDANTDMTFEDVKKALKNKLSSRLDFITGISIKNKLEEILSIENIKNKEDGEV
                     QIKLLIKKLSPIVQEFDTEKEKNQQILDSGDYAKWLSICNLKSEVTIGLMNSFESDYQ
                     FRALNKIKKNNDLQQILKDFIALPEIGE"
BASE COUNT         1196 a          823 c          599 g         1254 t
ORIGIN      
        1 cgaactctta gaagtgtgct gaaccttaat cccacccact actcggctca tcgcatgaat
       61 ctattctacc ataatctcaa ggatttgcaa gcctgattac tccattcgtt cttgaatggt
      121 tacttgtact ctatcaccag cctgttttcc aatagccact cgaatagcct tttgaacgcc
      181 aataatataa cagatattgc ctgcttcatc cttaactccc atatttacga ttgaaccatc
      241 ataaggatgt tcatcaaaag tcgcatggac ttttactctg cctttgccaa attcctctcg
      301 aatatcataa ggaaagatga cataggctcc tcccttatct ggaacagagt ggatagttgc
      361 ttcaaattca tatactttag acaaaattcc tcctaaatgt acttactggc ttcacgaatg
      421 gatagacctg ccatttgaga actatattta tcaagaaaat cccgcaccca gtcaggattg
      481 gttttggaat aatctcgcaa actccagcca atcgccttgt taatgaaaaa ttcagtttga
      541 ttgagattgt taatgataat tttctcaaga agttctgtat ctgtcttttc tttttgcaag
      601 agttggtggt caatagcaat tcgcctcaac cagaaatcat catcaaggct ccattccaaa
      661 atggtctgct tggcctctgg attgtccatt acaatcttac ccactagctt gtccagtccg
      721 tcaatactat cccaccatga ctttgtctga gcaagctttt tcaaacgggg taggtcggct
      781 aaaaccaaat cctttttctt tgtcaccaga taatcaatag cgatatactg aaactcacga
      841 taggggctag cccaacaagc ctctacaaaa tcccagttaa ttccctgagc cttgaaatct
      901 ttgaaaaact gcttggcaac ttttcggcgg tcaggcgttc gtacacccaa gaattcaaag
      961 ttgtttttca tataggcttt cattggctgt gcctgctctt tttctgctag ggccaacaat
     1021 cgtttttcca attctacaat atccatttta gtcacctaca agagactttt ggagccagac
     1081 gatatcatgc caagtgccaa atttatatcc aactttttta aaatgagcca cctgctgata
     1141 tcctttcttt tcatgcaagg caatggaagc aggatttggt aaggcaatgc aggctaaaaa
     1201 gtttttgaac ccacgcgcag tcaattcctc ctccaaagca gtgtagagca aattcccaat
     1261 cccttttcca cgtgcttctt tttgaacata gaccgaaaat tctaccgtcc aatcataggc
     1321 tgcacgtgca taataggtcg atgcataggc atatcccact atctttccct cttcgactgc
     1381 gaccagatag ggaaacttct ccaaggtctt ttcaattcga cttgcaaagg cttcgacagt
     1441 cggtacttct gtttcaaagg taatagcggt cttttctaca taaggagcat aaattgccac
     1501 aaggtctgca gcatcctcta tccttgcgga acgaatgtct atcatttagt tctccaataa
     1561 ttctctatca taaattgtat aatcacagcg gtagataatc aaccgcttgc catcaattaa
     1621 gagttcagaa gtcttaggtg catcagatgc ataaagagat actttatcac ctacataagt
     1681 agcaagcggg gttccgtttt gcgaacgaat caaaaccacc tttgccttac ctgtaaaatc
     1741 atttttgaga ctagatacca tatggttaac aagcggaatt gcacgatcgt aatttgcaat
     1801 atctactgtg gtctgatatt tcgcatacaa gtcttccaaa ccttcttctg ctgcaatcaa
     1861 ggatgaaccg acatggtcaa tttcataatt accaagtgtg actttcaaaa cagacgaatc
     1921 cgcattggaa tagccttcgg catccaccga gtcaaattcc tgattccgcg aaatcgaaag
     1981 ggacctacca gacatttcat ctattaactg agaattttca tcgtatgtcc gtaccgtcat
     2041 ctccaaacca atccattctt ccttggtatt tttccaccaa tttgaaatcg actgacaggc
     2101 agacaaggtg actaggctgg ttactaatac agcaacaagt gctaactttt tattccattt
     2161 catataaaac ctccaatggt tgatacctta ttgtaacatg gaagagtcag ggttggataa
     2221 aaatagctat ttttaacgat taggagcttc ataattgtaa gaaaaaaacc acaaaatgcg
     2281 gtttctgtaa cttaagatga ctcagtttgg agtatctaca ctgtctcaat attaggccat
     2341 gctaatacga cttacttcaa aagcaaaacg ctctttaatg agtgaattga tttgcacatt
     2401 tgaatctaca aaagttaaag atttctttat ttcactaaaa agagtaatct tgtaacaaat
     2461 tgataaaagc cgaattaaca aacgaagtgc tgacataaga tatcgaatcg aatgagacag
     2521 caacgaattg accactgtcc aaataatttt ttaatgtctc tagtaaaact aatcttgact
     2581 cattatcaga gtacttacta acaatatctt ttacattgat agttaccatt caaattcctc
     2641 ctcttcttct aggtcatagc gatattcatt agatatatca ataccgtgtg ttcgtcaaat
     2701 tgtaatctaa tagttggatt attccccaat ttctggtaag gcaatgaaat cttttagtat
     2761 ttgttgaaga tcattattct tctttatctt atttaatgct ctgaattgat agtcactttc
     2821 aaaactattc attaaaccaa ttgttacttc actcttcaaa ttacagatag aaagccattt
     2881 agcataatct ccggaatcaa gaatttgttg atttttttct ttttctgtat caaattcttg
     2941 cacaattggg gaaagttttt taataagaag tttaatctga acctccccat cctctttatt
     3001 ctttatattt tcaatagata atatttcctc caatttattt tttattgaaa tacctgttat
     3061 aaaatcaagt ctactagata gtttgttttt caaagccttc ttaacatctt caaaagtcat
     3121 atcagtattg gcatcatcca gtacagctct aacaacggac tcatgcatca ataacatttc
     3181 tatttcattg acaggaatag aaaaaatttt ctcattttta tatttttcca atttttcaac
     3241 agtatgaaaa tcacgatcaa ttactccaat tccctcaatg ccctgtggcg tcaatttatt
     3301 tagtgccctt acattattaa caacatcaaa gtgtcctccg acaggcttta tcaagtaacg
     3361 atctgagtat agaatattga acagttgata gtctatactt tcgatagttc cttcgcaaaa
     3421 taagattggt ttacggctac cgactagttc gatcaatagc tgtctgctaa aatctacctc
     3481 taagttattt aatggttgta aatcaaaatc agtattattt acatattttt tgcaccaaac
     3541 aattcgcgga tttactcgac cggaaataaa atcactattg tgagaaacaa aaacaaactt
     3601 gcaatcctgg cgataatcta aaatcaaatc ccacagtttg ttacaaattg caatgtttaa
     3661 atgggtttct ggctcatcaa tcacaaaaac cgtgttttct tttgcaagaa cggcacatga
     3721 aatgtagaaa agagcacttt tttcgccatc actcagagaa ttgatactat acctgctaaa
     3781 tttctcggct tcaatggttc cattcattga gtccgttcgt aagctaatat tttcaaaaat
     3841 tgatgaaaat aaagaaataa ttatatctaa tt
//
LOCUS       DASFRC010000191         3864 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.191, whole genome shotgun sequence.
ACCESSION   DASFRC010000191 DASFRC010000000
VERSION     DASFRC010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3864)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3864)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3864
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.191"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            139..357
                     /locus_tag="U1087_002032"
     CDS             139..357
                     /locus_tag="U1087_002032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgQ family protein"
                     /protein_id="HEM4756464.1"
                     /translation="MKRLYDVQQLLKRFGIIIYMGNRLYDIEMMQIELNRVYQAGLLD
                     RMAYMEAELVLRREHRLELEYQKMKESQ"
     gene            357..743
                     /locus_tag="U1087_002033"
     CDS             357..743
                     /locus_tag="U1087_002033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEM4756465.1"
                     /translation="METLWVFLVFVIILGSWMGFNYWRLRRAATVIDNAEFAEKIHGG
                     QLIDLRDPSEFNRKHILGARNIPYQQLRQSTAALRKDRPVLIYENDRGQLVTPAALHL
                     KKQGFNEIYILSYGLNGWNGKVKTTK"
     gene            800..1516
                     /locus_tag="U1087_002034"
     CDS             800..1516
                     /locus_tag="U1087_002034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HEM4756466.1"
                     /translation="MEKKFEKLSLAEIGIISFMGLILLISLGASWYKNAQSETSDTKT
                     VQQVPNQKKTVDTLFQDAENAVIVLEGTHTEEKLAEAQSAVNKVTDATKKAALQKRID
                     QVKELVGQQIDAQTQAKLKAELVRAEAAQKVADEKKVSETGTSQSTDLAEASETSQES
                     YVVPNQNIYGNQSVSSTSQYTSSVASTSTSVPPTSEGAPMVETPTVSETPAETTDSTT
                     SLVESVETVPTADESSPDNP"
     gene            1826..2365
                     /gene="rsmD"
                     /locus_tag="U1087_002035"
     CDS             1826..2365
                     /gene="rsmD"
                     /locus_tag="U1087_002035"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HEM4756467.1"
                     /translation="MRIVSGSYGGRPLRTLDGKTTRPTSDKVRGAMFNMIGPYFEGGR
                     VLDLYAGSGGLSIEAISRGMESAVLVERDRRAQAIIRENIAMTKEADKFQLLAMEARQ
                     ALNSVEGPFDLVFLDPPYAEQEIEDVITELCRRDLLADDVMVVCETDKAVSLPEEIAE
                     LGIWKEKLYGISKVTVYVR"
     gene            2355..2843
                     /gene="coaD"
                     /locus_tag="U1087_002036"
     CDS             2355..2843
                     /gene="coaD"
                     /locus_tag="U1087_002036"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HEM4756468.1"
                     /translation="MSDKIGLFTGSFDPITNGHLDLIERASGLFDKLYVGVFTNPKKA
                     GLLTVLERKVILEKLFVGMENIEVVLSENELVVDVAKRYGVTHLVRGLRNATDLEYES
                     SFDFYNRQLAPDLETIYLIAKPELKFVSSSQVRELLYFKQDIGPYVPEIVSEEIRKNE
                     EK"
     gene            2830..>3864
                     /locus_tag="U1087_002037"
     CDS             2830..>3864
                     /locus_tag="U1087_002037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEM4756469.1"
                     /translation="MKKNRKLTLIASIVLGTLLIWFAVFVRLPYYLESPGGAADIRQV
                     LTVNNQIDQEDGSYNFTYVSVQQATALQLFAAQFDPYTTVRSSEEMTGGADNEEYFRI
                     AQFYMETSQNMAKYQGLTLAGKEVNLDFFGVYVLALADDSTFKKVLNIADTVVSINGK
                     TFESSPDLIKYVSGLELGSDVTVGYISAGQEKSADGKIIKLSNGKNGIGITLVDHTEV
                     QSSIPIDFQTGDIGGPSAGLMFTLAIYTQLAEPDLRDGRIIAGTGTIEQDGKVGDIGG
                     ADKKVISAAKSGASIFFVPNNPVDVEVLKKNPKAKTNYEEAKEAAEKAGLDIEVVPVK
                     TVQEAIDYLKK"
BASE COUNT         1197 a          627 c          937 g         1103 t
ORIGIN      
        1 agaatagttt ctttaattgt ttaaatgctt aacttaatga cattggggga gaacccaatc
       61 tttttttgat gaatgcaggg aaacagcact tgagttttta tattgaaaat cttcggatat
      121 tctgctaaaa tttactatat gaaacgacta tatgatgtgc aacagttgct aaaacgcttt
      181 ggtattatca tctatatggg caatcgtctc tatgacatcg agatgatgca gatagagctc
      241 aatcgcgttt atcaggctgg tcttctggat aggatggcct acatggaggc cgaattggtt
      301 ttgcgacggg aacatcgttt ggaattagag tatcagaaga tgaaggagag tcagtagtgg
      361 aaactttgtg ggtatttctc gtatttgtta ttattttagg gtcatggatg ggctttaatt
      421 actggagatt gcgtcgtgca gcgactgtga ttgataatgc agaatttgca gaaaagatac
      481 acggaggtca gttgattgac ctgcgagacc cgagtgagtt taatcgtaag catatcttag
      541 gtgcgagaaa tattccttac cagcaattgc gccagtctac agctgctttg cgtaaggaca
      601 gacctgtctt aatctatgag aatgatcgtg gtcagttggt aacgcctgca gctcttcatc
      661 tgaagaaaca gggctttaac gaaatctata ttttaagcta tggtctaaac ggatggaatg
      721 gtaaggtaaa aacgactaag tagcattgtc agtaggctag agtattttct tatgcaataa
      781 gacggataag ggcaaaaata tggaaaagaa atttgaaaag ttgtcattgg cagaaattgg
      841 cattatttct tttatgggac ttattttatt gattagctta ggcgctagtt ggtataaaaa
      901 tgctcaaagc gaaacaagtg atacaaagac agtacagcaa gtgcccaatc agaaaaaaac
      961 ggttgataca ttatttcagg atgctgagaa tgctgtcatt gtattagaag gaacacatac
     1021 tgaagagaaa cttgcagagg cacaatctgc agtaaacaag gttacggatg cgactaaaaa
     1081 agcagcatta cagaaacgga ttgaccaagt aaaagagcta gtgggacagc agatagatgc
     1141 tcaaacacag gctaagctaa aagcggagtt ggtcagggcg gaagcagccc aaaaagtagc
     1201 tgatgagaaa aaagtatctg aaacagggac tagtcagtca acggaccttg ctgaagctag
     1261 tgagacctca caagaatcct atgtagtgcc taatcaaaat atatatggaa atcaaagtgt
     1321 gagttcaaca agccagtata caagcagcgt ggcgtcaact agtacttcag tccctccgac
     1381 tagtgaagga gcacctatgg tagaaactcc aacagtttct gaaacaccgg cggaaacgac
     1441 ggattcaaca actagcctgg ttgagtcagt agaaacagtt ccaacagctg acgagagttc
     1501 accagataat ccgtaggctt tttgactact ggttctttat ggcgtattaa catactagaa
     1561 aaatagctat ttgtatttca atatcaattt tttcttgtaa cgatctagtt taaatacata
     1621 cgataagagt gaggaatttc gcgtaaaaca gaatttcctt gctttttatt tttatcattt
     1681 tattgaataa tgtgagaatg atttcctgct atagcggttg agagtgtatt tgataggagg
     1741 atgaaaaagt tggtgcaaaa aggaaagcag aacaaagtgc acttggtttc agcaacgagc
     1801 ttcatttttt gctataatat accttatgag aattgtatcg ggaagctatg gtggaagacc
     1861 actgagaacg ttagatggaa aaacaaccag accgacatcg gataaggtcc gtggagccat
     1921 gttcaatatg attggtccct attttgaggg tggtagagtt cttgacttgt acgccggcag
     1981 tggtggttta tctatcgagg ctatatctcg tggcatggag tcagcagttc tggttgagcg
     2041 agatcgacga gcacaagcca ttatccgtga aaatattgca atgactaagg aagcagataa
     2101 atttcagctt ctagcaatgg aagctagaca ggctttgaac agtgtggaag ggcctttcga
     2161 cctggtattc ttggaccctc cttatgcaga gcaggaaatt gaagatgtga taacagaact
     2221 ttgtcgccgt gacttactag cagatgatgt tatggtagtc tgcgaaacgg ataaggcggt
     2281 ctctcttccg gaggaaatag cagagctggg gatatggaaa gagaaactct atggaattag
     2341 taaggtaaca gtatatgtca gataagattg gattgtttac gggctcattt gaccccatta
     2401 ccaatggaca cttggactta attgaacgag cgagtggact atttgataaa ttatatgtgg
     2461 gagtttttac caatcctaaa aaggcaggac tcttgacggt cttggagaga aaagtcattt
     2521 tggagaagct ttttgtagga atggagaata tcgaggtcgt tctgtctgaa aatgaattgg
     2581 tagtcgatgt agctaagcgc tatggagtaa cacatttggt ccgaggattg cgtaatgcga
     2641 ccgatttgga atacgagtca agttttgatt tttacaatcg tcagttggcg ccagatttgg
     2701 aaactattta tttaatcgcc aagccagagc ttaagttcgt atcatccagt caggttcgag
     2761 aattgctgta tttcaaacag gatataggtc cttatgttcc agaaattgtt agtgaggaga
     2821 ttagaaagaa tgaagaaaaa taggaagtta accttaattg catctattgt tttaggaact
     2881 cttttgattt ggtttgccgt ttttgttcgt ctgccttatt atttggaaag tccaggtgga
     2941 gctgccgata ttcgtcaggt actaacggtg aacaatcaaa tagaccaaga ggatggctct
     3001 tacaacttca cctatgtatc agtccaacaa gctacagctt tacaactatt cgctgctcag
     3061 tttgatccct atacgacagt tcgttcctct gaagagatga caggaggggc cgacaatgaa
     3121 gagtattttc gtatagcaca gttttacatg gagacatcgc aaaatatggc gaagtaccaa
     3181 ggtttgacct tagcaggaaa agaagtcaat cttgatttct ttggtgtcta tgtacttgcc
     3241 ctggcggatg attcgacctt taaaaaagtt cttaatattg ccgacactgt tgtgagtatc
     3301 aatggaaaaa catttgagtc ttctcctgat ttgataaaat atgtgagtgg cttggaactt
     3361 ggaagtgatg taacagttgg ttatattagc gctggtcagg aaaaatctgc ggatggaaaa
     3421 attatcaaat tgtctaatgg caaaaatggg ataggtatca ctctcgtaga tcatacagag
     3481 gttcaaagtt cgattccgat tgatttccaa acaggagata ttggtggtcc aagtgctggt
     3541 ctgatgttta cacttgccat ctatactcaa ctcgcagagc ctgacttacg tgatggtcgg
     3601 attattgctg gtacggggac tatcgagcag gatggaaaag taggtgacat tggtggggct
     3661 gataagaagg tcatttcggc agctaagtct ggtgcaagta tcttttttgt accaaacaat
     3721 ccagttgatg tagaagtttt gaagaaaaac ccaaaggcta aaacgaacta tgaagaagct
     3781 aaggaagcag ccgagaaagc aggtctagat attgaggtag ttcctgtgaa aactgttcaa
     3841 gaggctattg attatttgaa gaaa
//
LOCUS       DASFRC010000192         3763 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.192, whole genome shotgun sequence.
ACCESSION   DASFRC010000192 DASFRC010000000
VERSION     DASFRC010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3763)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3763)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3763
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.192"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..284)
                     /locus_tag="U1087_002038"
     CDS             complement(<1..284)
                     /locus_tag="U1087_002038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014947343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HEM4756470.1"
                     /translation="MNFFDCFSGIGGFRMGMESQGHTCIGFCEIDKFARRSYQAIFET
                     EGELEYHDITQITDDQLRKLRGQVDVLCGGFPCQAFSLAGRRLGFEDTRGT"
     gene            complement(438..1223)
                     /locus_tag="U1087_002039"
     CDS             complement(438..1223)
                     /locus_tag="U1087_002039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016397065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiator protein A"
                     /protein_id="HEM4756471.1"
                     /translation="MKRISANHYQTSERYYKLPKLLFESDRYKDMKLEVKIAYAVLKD
                     RLELSLSRGWIDEQGFIYLIYSNSKLMELLGCSKSKLLAIKKSLRDFGLIEEVQQSSS
                     EKGRLANKIYLGELEHEPTPVLNSDGGGVKKTRGQSQNQTGPVLISATSETEDNETEH
                     SETKESDCLSEDEEEKGLTRKVDKPTTYDKDYIYQLVYDQLIREKFSKTSAEFVMRHF
                     DDRYQYALDNMRFARTAEVIAEYVFNGILAEWNKERRQEQERR"
     gene            complement(1210..1389)
                     /locus_tag="U1087_002040"
     CDS             complement(1210..1389)
                     /locus_tag="U1087_002040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756472.1"
                     /translation="MDFAESTRLGVVGYLMLTMGVTLPKATEILKELETSGLVNVKTG
                     GQLEIKVVEDNHETN"
     gene            complement(1528..1674)
                     /locus_tag="U1087_002041"
     CDS             complement(1528..1674)
                     /locus_tag="U1087_002041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018167237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutT"
                     /protein_id="HEM4756473.1"
                     /translation="MSRREQVVLTNMCMITDGRRVLVQDRKSEKWPGVTFPGGDCVII
                     MTGA"
     gene            complement(1678..2046)
                     /locus_tag="U1087_002042"
     CDS             complement(1678..2046)
                     /locus_tag="U1087_002042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756474.1"
                     /translation="MDRVYAVKCLVKNEFEPTYENYSSYEEVTYLLPANVLVWDDEQV
                     DKNKLADYLRGLVEDGYVNADGIWKQSRLFHIAGVQEMDDRVEFDGPAVEVYRWFYNF
                     ERPVTEEEFLNLYYFDDLGR"
     gene            complement(2039..2608)
                     /gene="rnmV"
                     /locus_tag="U1087_002043"
     CDS             complement(2039..2608)
                     /gene="rnmV"
                     /locus_tag="U1087_002043"
                     /EC_number="3.1.26.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease M5"
                     /protein_id="HEM4756475.1"
                     /translation="MTQKIKIQEVLVVEGKDDTANLKRFYEVDTYETRGSAISDDDLE
                     RIEKLHDLRGVIVFTDPDYNGERIRKIIMQAIPTVKHAFLQRDEATPKSKTTGRSLGI
                     EHASFEDLEKALAGVRGYYDDENNFDISKSDLMRLGLLMGGESRKRREYLGEKLRIGY
                     CNGKQLLKRLELFGISLVEVEEAMESYHG"
     gene            complement(2592..3374)
                     /locus_tag="U1087_002044"
     CDS             complement(2592..3374)
                     /locus_tag="U1087_002044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEM4756476.1"
                     /translation="MIQIFDTHTHLNVEQFDGRVQEELDFAKEMGVTLHNVVGFDRAT
                     IDKAMELADQHPEIYLTLGWHPTEAGTYDEEVENYLLKALQHPKVIALGEIGLDYYWM
                     TADKEIQARVFKRQMELAKQLDLPFVVHTRDALEDTYQIIKEVGVGPRGGIMHSFSGT
                     LEEAQAFMDLGMHISFSGVVTFKKAVELQEAAQALPLEKILVETDAPYLAPVPKRGRE
                     NRTGYTRYVVDMLAQLRNQSVEEVARATYENARSLFRIDSEN"
     gene            complement(3482..3619)
                     /gene="rpmH"
                     /locus_tag="U1087_002045"
     CDS             complement(3482..3619)
                     /gene="rpmH"
                     /locus_tag="U1087_002045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HEM4756477.1"
                     /translation="MKRTFQPSKIRRARKHGFRSRMATKNGRRVLAARRRKGRKVLTV
                     A"
BASE COUNT          961 a          979 c          728 g         1095 t
ORIGIN      
        1 gtgcctctag tgtcctcaaa tcccagtcgt ctgcctgcga gagaaaaggc ttggcaagga
       61 aagcccccac agaggacatc aacttgtcct cggagttttc tgagttggtc atcggtgatt
      121 tgggtaatgt catggtattc taattctcct tctgtctcaa aaatggcctg ataagaccgt
      181 ctagcgaatt tgtcaatttc gcaaaaacca atgcaggtat ggccttggct ttccattccc
      241 atacgaaagc caccaatccc tgaaaagcaa tcaaaaaagt tcatcaattt ctcctttcgg
      301 gtatcaaaaa agaccttaca tctcgtaaag ccttggttag atatggtcct ccatctctgg
      361 agcattgata atctcaacca ccaaactgat gattgacaca ataaaaatgc ctagtgcaag
      421 tttccaccac atggttctca cctcctctcc tgttcttgtc ggcgttcctt attccactct
      481 gccagaatcc cattaaagac atactcagct ataacctctg ccgttctggc aaacctcatg
      541 ttgtccaaag catactggta acggtcatca aagtgcctca tgacaaactc tgcacttgtc
      601 ttagaaaact tctcacgaat cagctggtca tagaccaatt ggtaaatata atccttgtca
      661 taggtggttg gcttatccac tttgcgagtg agcccttttt cctcctcatc ctctgaaaga
      721 caatcgctct ctttagtctc actatgttca gtctcattat cttcagtctc actagtggct
      781 gaaatcaaga cggggcccgt ctgattttga gactggcccc gtgttttttt aacaccaccc
      841 ccgtctgaat ttaagacggg ggtcggttca tgttctaatt caccaaggta aatcttgttt
      901 gcgagccgac ctttttcact tgatgactgt tggacttctt caataagtcc aaagtctcgc
      961 agtgatttct taatagccaa gagttttgac tttgaacagc ctaaaagttc catcaatttt
     1021 gagttagagt aaatcaagta gataaagccc tgctcatcta tccagcccct actcaaagac
     1081 aactccagtc gatctttcaa aacagcataa gcaatcttga cctccagctt catatccttg
     1141 tatcggtcac tctcaaacaa gagctttgga agtttgtagt atctttccga tgtctgataa
     1201 tgattggcac taattcgttt catgattgtc ctccactact ttgatttcta gttgacctcc
     1261 tgttttgaca ttaaccaggc cacttgtttc taattctttc agtatttctg tcgcttttgg
     1321 tagtgttact cccattgtaa gcatgaggta gccaacaaca ccaaggcgag ttgattctgc
     1381 aaaatccaca attttcctcc ttgtaaaata aaaaaagcaa gaacactcta aactgttctt
     1441 gcctaagcaa taatatttta taaactgtga tgaagtcctc cttaatgaca gattgtagaa
     1501 cgctcaaatc cttgatttat cagcgtttta agcacctgtc attattatga cacaatcccc
     1561 cccagggaaa gtcacaccag gccacttttc agacttccta tcctggacca acaccctccg
     1621 accgtctgta atcatgcaca tattggttaa gacaacttgt tctcgtctag acattcccta
     1681 tctccccaaa tcatcaaaat aatagagatt caaaaattct tcctcagtaa ctggacgttc
     1741 aaaattgtaa aaccagcgat agacttccac ggctggtcca tcaaactcta ccctgtcgtc
     1801 catttcttgc acaccggcaa tatgaaacaa acggctctgc ttccaaatac catccgcatt
     1861 gacatagcca tcttcaacta aaccacgcaa atagtctgct agtttgttct tatcaacctg
     1921 ctcatcatcc caaacaagaa cattggccgg cagcaagtag gtcacttctt cataagatga
     1981 gtaattctca taagtaggct caaactcgtt tttaaccaag cacttaacag cgtagaccct
     2041 atccatgata gctctccata gcctcctcaa cctccaccaa acttatccca aacaattcca
     2101 atcgtttgag gagttgtttg ccgttgcagt agccgatgcg gagcttctct cccagatact
     2161 ccctccgctt gcggctttca ccccccatca gcaatcctag gcgcattaga tctgacttgc
     2221 tgatgtcaaa gttattttca tcatcatagt agccacgcac gcctgcgagg gccttttcca
     2281 agtcctcaaa gctggcgtgc tcaatgccca aggaccgccc tgttgttttg gacttaggtg
     2341 tagcctcgtc ccgctgtaag aaggcgtgtt tgaccgtggg aatggcctgc ataatgattt
     2401 ttcgaatccg ctcgccattg tagtcggggt cagtaaagac aatgacgccc cgcaggtcat
     2461 ggagtttctc gatgcgttcc aagtcatcgt ctgatatggc agagcctctg gtttcgtagg
     2521 tatccacctc gtaaaatcgt tttaggtttg ctgtatcatc cttgccctcg acaacgagga
     2581 cttcttgtat cttaattttc tgagtcaatt ctgaacaagc tccttgcatt ctcgtaggtc
     2641 gctctcgcca cctcttcgac cgactggttg cgaagctggg ccagcatatc caccacatat
     2701 ctggtgtagc cggtgcgatt ttcccgacca cgcttgggaa ctggggccag gtagggcgca
     2761 tccgtctcga ccaggatttt ttctaggggc aatgcttgcg ccgcttcctg aagttcaacg
     2821 gcttttttga aggtcaccac tcccgagaag gagatgtgca tgcccaggtc catgaaagct
     2881 tgagcctcct ccagagtgcc agagaaggaa tgcatgatgc ctccacgcgg accgacgccg
     2941 acttccttga tgatctggta agtatcttcc aaagcatcgc gagtatggac cacaaagggc
     3001 aaatccaact gcttggccag ctccatctgt cgcttgaaaa cacgagcctg gatttcctta
     3061 tccgccgtca tccagtagta atccagtcca atctctccca gggcaatgac cttgggatgc
     3121 tggagggctt tgagcagata gttttccact tcctcgtcat aagtgccagc ctctgtcgga
     3181 tgccagccca atgtcagata aatttcaggg tgctggtcag caagctccat agccttgtca
     3241 atggttgcac ggtcaaaacc gaccacattg tggagggtga cccccatctc cttggcaaag
     3301 tctaattctt cttggacccg accgtcaaac tgctcgacgt tgaggtgggt atgggtatca
     3361 aaaatttgta tcatcgttcc atcactttct ttcctactat tgtaacatat ttcagaagat
     3421 tcttatgaga agaaaaaaaa ccagcagact cgagtttctg ctggcttctc ttttcatctt
     3481 cttatgctac tgtaagaact ttacgtccct tacggcgacg agcagctaac acgcgacggc
     3541 cgtttttagt tgccatacgg ctacggaaac cgtgtttacg cgcgcgacgg attttacttg
     3601 gttgaaaagt acgtttcacg atgaatacct cctcttagat tcttgtattc gtttagccgg
     3661 ctagttttga tcagttacta aacataccaa actattttat ataaattctg ttcgtttgtc
     3721 aagctattct gccatacttt taggaaagaa tcagaaaatc att
//
LOCUS       DASFRC010000193         3698 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.193, whole genome shotgun sequence.
ACCESSION   DASFRC010000193 DASFRC010000000
VERSION     DASFRC010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3698)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3698)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3698
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.193"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..958)
                     /locus_tag="U1087_002046"
     CDS             complement(<1..958)
                     /locus_tag="U1087_002046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM4756478.1"
                     /translation="MSYYYEKLTGKVAKHLARFPYYATDKILNLMQFQDSNQQFLISD
                     KHLYDYFEEQKHQLSTDEKLSILFSLFKGRIDVYAKSYIDENGKINYFPSYNYGWKKL
                     PVGKRTCQPLTKQVLLAHLRGEISIGIFPMSLSDTCSFLAIDFDKNNWREEVSILRDT
                     AEQHGFEGHIEISRSGNGAHLWFFFEEEIACQQARNVGKRLLELAMQESKDIRFSSFD
                     RMFPNQDILPKGGFGNLIALPLQGEAFKKGRTVFVDKHFQPFSEQWTYLQQVQKIDQK
                     KILDFLGQEFSDTVDDTVLDCSLSNVIQVEKRAISSKTNYLLR"
     gene            complement(1057..1859)
                     /locus_tag="U1087_002047"
                     /pseudo
     CDS             complement(1057..1859)
                     /locus_tag="U1087_002047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922020.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
     gene            complement(2224..3660)
                     /locus_tag="U1087_002048"
     CDS             complement(2224..3660)
                     /locus_tag="U1087_002048"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756479.1"
                     /translation="MRFINLTIKEGFFSKNFDFGDKTAIYSHINSVGKSTLLRLLFYS
                     IGYSIPSTKKIRFDKLETILYLETVEGICEIYRKDKDIVLKCIDSETWKLRLPKDLEF
                     ILQKIFNIRNSDVLLNIIGAIYLDQDKGWTLLNRGTVIGGIKFKIDQLIQGMLNIEPL
                     QALNVELEEVVEGISRLKQLKKIVDYQHENTTIIKESNFESTKLLDLEKNLSMIMGKI
                     SSLESEKDTLRVTLEKNEEYLAYLENLHLFIKAPESGEEFLLKKEFVKGFGAYQKIIE
                     LKIYNLERKIKELRKKEEKIRIEIRDSEKFFNTENTIELFENRLNLLVVPKETIDSEL
                     SRLKNRKKELESIRLNYLSSELMQKIYENIMYFAKKLDVAEYLEHEKDFILTSDLKSY
                     SGTILHKLVFCFKLAYIVELQKYLGFRLPIVLDSPSGREVDQKNIEDMFKILNEDFVD
                     NQIIIASIFEYPLYSPDKIIKINKNLLE"
BASE COUNT         1171 a          693 c          554 g         1280 t
ORIGIN      
        1 ttctcaataa gtaatttgtt tttgaagaaa tagccctctt ctcaacttga ataacgtttg
       61 ataagctaca atctaatact gtatcatcta cagtatccga aaactcctgt cctaagaaat
      121 ctagtatttt cttctggtca atcttttgaa cctgttgaag ataggtccat tgttcagaaa
      181 agggctgaaa atgtttatca acaaaaacgg ttcttccctt cttgaaagct tccccttgta
      241 agggcagtgc gataagattg ccaaaccctc ccttgggcag aatatcttga tttggaaaca
      301 tacggtcaaa tgaagaaaag cgaatatctt ttgactcctg catagccaat tccagcagtc
      361 tttttccaac atttctcgcc tgctgacaag caatttcttc ctcgaagaaa aaccagagat
      421 gagcaccatt gcccgaacga gagatttcga tatgcccctc aaaaccatgt tgttctgctg
      481 tatctcttag aatggagacc tcttctctcc aattattttt atcaaaatca atcgccaaaa
      541 aggaacacgt gtctgataaa ctcattggaa aaatgccaat actgatttcg ccacgtaggt
      601 gagccaataa tacctgtttg gtcaagggtt gacaagttct ctttccaaca ggaagttttt
      661 tccaaccata gttgtaagaa ggaaaatagt tgatttttcc attttcatca atataagatt
      721 tcgcataaac atctatacgt cccttaaata ggctgaacag aatggagagt ttttcatcgg
      781 tacttagttg atgtttttgt tcttcaaagt aatcatacaa atgcttatca cttatcagaa
      841 attgctgatt gctatcttga aattgcatta aattcagaat cttatcggta gcataatagg
      901 gaaaacgagc aagatgcttt gcaaccttac ccgttaattt ttcataataa taagacatgt
      961 gagttcctcc aaattgccta ttgagactat caacgaaaag tcaaaagccc aagtattcac
     1021 tggtctattt ccggattgaa aactatcctg tctttattaa tattcatcta tccccaactc
     1081 ctcgtacatc ctctcacttg ataaatcatt ctgaccgttc aagaggagat tctcaaagaa
     1141 ggcggttaaa aagtctgagc gtttattgac taacttagca ttgtcaagta caagggcatc
     1201 gcggaaatat ttggcatgtt tttgaaaagg ctccttgtca atgtcgaaac caaatgagcg
     1261 aaggtattgg ataagaaata cggtgattgt tcgagtattc ccttcacgga atggatggat
     1321 ttgccaaata cctgaaataa aggattgaat atggcaacaa tagcattttt tatctaatcc
     1381 agcatagaaa aatctctttc ttgctggaaa tcatagtcta gagtcgcagc aatcagtgga
     1441 aaatcagaat aaatgactgt gtcccctttt aagactggtt cattttttgt aatgttgacg
     1501 gtacggtatt tgccaactgg aatattgctg tcaaaaacac cttgaaagag ctctttgtgg
     1561 atatgtaaga gagtgggtgg tcgaaggcta aaaccatttt gggagagcat ttcaacaatt
     1621 cggagagaga caagatctgc ctcttgtgta ctggcatcag ttgactggtg gtattttgta
     1681 atttcctcat acacctgttc ataggtgtat tctccacgag cttgcctatc agccaactcc
     1741 tccatataaa cagatggagt caacccatcc gctttttgaa gaccaaaacc cgtttcccag
     1801 agttcttgct tggcttcata cgaaagattg ggattatcaa tattgtaggt tggttgcata
     1861 gactcctcct gtttgaattt ctagcattat tataccacaa aacccagcca ttttaggctg
     1921 ggcatttgtt taatctagta tggctaaaat cagctcgata agactgtagt gggtaaaagt
     1981 actgtggcga ctatgtagcc ttttaaaata taaaataatg acttatatgc gtaactataa
     2041 aaagtgcttc atttatacca ttaaataaag tcatatagga taaatccaaa ataaaaataa
     2101 ttaatcttga ttcctaagaa cagaaataag aaagcggtgt tcagatttca ccccccctgc
     2161 tggtgtgaac ttacagaatt tgtcatgtaa gcacctgttt tataaaaaat ataaaactaa
     2221 aaattactct aataaatttt tattaatctt gattatctta tctggtgaat atagagggta
     2281 ctcaaaaatc gaagcgatga ttatctgatt atccacaaag tcttcattaa gaattttaaa
     2341 catatcttca atatttttct gatccacttc tcgtccacta ggtgaatcta agacaatcgg
     2401 caacctaaag cctaagtatt tttgaagctc gacaatatat gctaacttaa agcaaaatac
     2461 tagcttgtgt aaaatagtcc cgctataaga cttcaaatca gaagttaata taaagtcttt
     2521 ttcatgctct aaatactctg ctacatctaa ttttttcgca aaatacatga tgttctcgta
     2581 aattttctgc atcaattcac ttgataagta gtttaaacgt atcgactcta attctttttt
     2641 tctatttttc aaccgtgata attctgaatc aattgtctct ttgggtacaa ccaagagatt
     2701 taatctattc tcaaataact ctattgtatt ctcagtatta aagaattttt ctgaatccct
     2761 aatctctatc cttatttttt cctctttttt tcttaattcc ttaattttac gttctaaatt
     2821 ataaattttt aactcaataa ttttctgata ggctccaaaa cctttgacaa attctttttt
     2881 taatagaaat tcctcccctg attcaggtgc tttaataaat aaatgtaagt tctctaaata
     2941 cgctagatac tcttcatttt tttcaagagt taccctcaag gtatcttttt ctgattctaa
     3001 gctacttatt tttcccatta tcatagacag atttttttct aaatccaata atttagtcga
     3061 ttcaaaattt gattccttga taattgtagt attttcgtgt tggtaatcaa ctattttctt
     3121 cagttgtttt aatctagaaa tcccttcaac tacctcctct aattcgacat ttaaagcctg
     3181 aagaggttct atatttaaca taccttgaat tagttgatca attttaaatt taattcctcc
     3241 aataacagtt cctcgattta ataatgtcca tcctttatct tgatctaaat atattgcccc
     3301 aataatattc agtaaaacat ctgaatttct tatattaaaa attttttgaa gaataaactc
     3361 taaatcttta ggtaacctta atttccaagt ttcagagtct atacatttta gaacaatatc
     3421 tttatctttt ctataaattt cacaaattcc ttctactgtt tctaaatata atattgtttc
     3481 taatttatca aaccttattt ttttcgtaga gggaatactg taacctatcg aataaaataa
     3541 gagacgaagt aacgtcgact tccctacgct attaatgtgg ctataaatag ctgtcttatc
     3601 tccgaaatca aagttttttg aaaaaaaacc ttcctttatt gttagattaa taaatctcat
     3661 ttaaagccat cccttctgtg atagtctcta tgccaact
//
LOCUS       DASFRC010000194         3645 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.194, whole genome shotgun sequence.
ACCESSION   DASFRC010000194 DASFRC010000000
VERSION     DASFRC010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3645)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3645)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3645
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.194"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            104..439
                     /gene="gpsB"
                     /locus_tag="U1087_002049"
     CDS             104..439
                     /gene="gpsB"
                     /locus_tag="U1087_002049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division regulator GpsB"
                     /protein_id="HEM4756480.1"
                     /translation="MASIKFTTKDIFEQDFKIGFRGYDQDEVNDFLDDIMKDYDAYEA
                     IIKELKGEIARLKAQAANSPKTTLPTEESNDVLRTERPSSATNFDILRRLNRLEKEVF
                     GKQIVQDQE"
     gene            578..942
                     /gene="rnpB"
                     /locus_tag="U1087_002050"
     ncRNA           578..942
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="U1087_002050"
                     /product="RNase P RNA component class B"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00011"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00011"
     gene            995..2161
                     /locus_tag="U1087_002051"
     CDS             995..2161
                     /locus_tag="U1087_002051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent RNA methyltransferase"
                     /protein_id="HEM4756481.1"
                     /translation="MKKQFELIATVAAGLEAVVGREIRNLGYECQVENGRVRFQGDVK
                     SIIETNIWLRSADRIKIIVGQFPAKTFEELFQGVFNLDWGNYLPLGCKFPISKAKCVK
                     SKLHNEPSVQAISKKAVVKKLQKHFSRPEGVPLQEMGAEFKIEVSILKDVATVMIDTT
                     GSSLFKRGYRVEKGGAPIKENMAAAILQLSNWYPDKPLIDPTCGSGTFCIEAAMLAKN
                     IAPGLKRSFAFEEWPWVEDQLVAALRKEAQASIKTDLVLDIAGSDIDARMIEIAKKNA
                     FAAGVEQDIVFKQMRVQDLRTDKINGVIISNPPYGERLLDDEAIVTLYREMGETFEPL
                     KTWSKFILTSDELFETRFGQQADKKRKLYNGTLKVDLYQFFGQRVKRQVQEVQG"
     gene            2171..3625
                     /locus_tag="U1087_002052"
     CDS             2171..3625
                     /locus_tag="U1087_002052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756482.1"
                     /translation="MGEKNSHHLPLDEEKVLDFDVAKDLTIEEAVKKHKEIEAGVTED
                     DGLLDRYIKQHRAEIESQKFETKINHLPLVEVADEEKNQGHESAEEVEANESSLTEVS
                     EEIAPIVEELSVTPMETLEETVIASTVAMEGLSSVADDSSLELEEDEAEDLDHSEGAD
                     RDQKKKFYFWSAVGLSMIGVMATALVWMNSVNKSNTATSSSSTSTSQTSSTASSSTDA
                     NVTAFEQLYNSFFTDSSLTKLKNSEFGKLAELKVLLEKLDKNSDSYTKAKEQYDHLEK
                     AIAAIQAINGQFDKEVVVNGEIDTTATVKSGESLSATTTGISAVDSLLASVVNFGRSQ
                     QEVASATVASEVAATSNQGADETVSTGVPATTEVASTTVSGSTTDFGIAVPAGVVLQR
                     DRSRVPYNQAMIDDVNNEAWNFNPGILENIVTISQQRGYITGNQYILEKVNIINGNGY
                     YNMFKPDGTYLFSINCKTGYFVGNGAGHSDALDY"
BASE COUNT         1155 a          594 c          882 g         1014 t
ORIGIN      
        1 aatgaggagg ctgaaaattt ttcaaattct gagtgatttg acttgatttt tccctatttt
       61 tttaatataa taggagtagt gacgttttag attagggaga gagatggcaa gtattaaatt
      121 tacgacaaaa gatattttcg agcaagattt taaaattggt tttcgtggct atgatcaaga
      181 tgaagtgaac gattttcttg atgatattat gaaagactat gatgcttatg aagcgattat
      241 caaggaatta aaaggcgaaa ttgctcgatt gaaagcgcag gcagcaaatt ctcccaaaac
      301 aactcttcct actgaagaat cgaatgacgt attgcgtaca gaacgtccat cttcagcgac
      361 aaactttgat attctccgcc gtctgaatcg tctggagaaa gaagtatttg gaaaacaaat
      421 cgttcaggat caagaataga aaattgtaca cctaaactga cactttattc gcagttattt
      481 tcttgtgcac aaatacattc tgtatttgtg tcagagatat tccttgcttt aaagtggctt
      541 gctttgtaga tacaacttct aagataatta aggtgcaatt tttggataat cgcgtggtag
      601 ttttctacca tgaggaaagt ccatgctagc actggctgag atgccagtag tgtttgtgct
      661 aggcgaatca ataagcctag ggacgccctt gggcgttacg gcggttaaaa tggctaagtc
      721 ttttgatatg ccagagtaga tctgaaagtg ccacagtgac gaagttttta tggaaacgta
      781 aaaaatggaa cgcggtaaac ccctcaagct agcaacccaa actttggtcg gggcatggga
      841 tggatggaaa tgaacagaaa tcctgactgt ttagacagta gacagatggt tatcgaaggt
      901 ggtagaacct agtaccaccg gaacaaaaca tggcttacag aaaattgcat aaaataggta
      961 gctagctctg ctagctttta ttgtagagga aaaaatgaaa aaacaatttg agttgattgc
     1021 aacggtagca gctggtctgg aagcggttgt gggtcgagaa attcgtaatc ttggctatga
     1081 atgtcaagtg gaaaatggcc gtgttcgatt ccaaggagat gtaaaatcca ttatcgaaac
     1141 caatatctgg ctgcgttcag cagatagaat taaaatcatt gttggacaat ttccagcaaa
     1201 gacttttgaa gagttgttcc aaggagtttt taacttggac tggggaaatt acttgcctct
     1261 aggctgcaag ttccctattt ccaaggccaa atgtgtcaaa tcgaaattgc ataatgaacc
     1321 aagtgtgcag gctatttcta agaaagcagt tgtaaagaaa ctgcagaaac acttctctcg
     1381 tcccgaaggg gttcccttgc aagagatggg ggcagagttt aaaattgaag tgtcgatttt
     1441 gaaagatgtg gcgacagtca tgattgatac gacaggttct agtttgttca aacgtggtta
     1501 tcgggtggaa aaaggtggcg caccaatcaa agaaaatatg gcagctgcta ttttgcaatt
     1561 atcgaattgg tatccagata aaccgcttat tgacccgact tgcggatcgg gaactttctg
     1621 tattgaggcg gctatgttgg caaaaaatat agctccaggt ttgaagagaa gttttgcatt
     1681 tgaggaatgg ccgtgggttg aggatcaatt ggtagctgca ttacgcaaag aagcgcaagc
     1741 ttctatcaaa acagatttgg tattagatat tgctggatca gatattgatg ctcgtatgat
     1801 tgaaattgcg aagaagaatg catttgcggc aggagttgag caggatattg ttttcaagca
     1861 aatgcgtgtg caagacttgc gtacagataa aattaatggt gtcattattt ctaatccacc
     1921 ttacggagaa cgtttgttgg atgatgaagc cattgttacc ctgtatcgag aaatggggga
     1981 gacttttgaa ccactcaaaa catggtctaa gtttattcta actagtgatg agttgtttga
     2041 aacccgtttt ggacagcaag cggataagaa acgcaaactg tataatggta ccctaaaagt
     2101 ggatctttat caattttttg gtcaacgagt gaaacgtcaa gtgcaagaag tgcaaggata
     2161 ggaggacatc gtgggagaaa aaaatagtca tcatcttcct ttggatgagg agaaagtttt
     2221 agattttgac gtggcgaaag atttaacaat cgaagaagca gtcaaaaaac ataaggagat
     2281 tgaagcgggt gtgacagaag atgatggtct cttggatcgt tacatcaagc aacaccgcgc
     2341 agaaattgaa tctcaaaaat ttgaaaccaa aatcaatcat cttcctttag ttgaggtggc
     2401 tgatgaggaa aaaaatcaag gacatgaaag cgcggaagag gtagaagcaa atgagtcttc
     2461 tcttacggaa gttagtgagg agattgctcc tattgtagaa gaactttcgg taactccgat
     2521 ggaaaccttg gaagaaacag tgattgcaag tactgtagca atggaggggt tatcttcagt
     2581 ggcagatgat tctagtttag aattggaaga agatgaagcc gaagacttgg accatagtga
     2641 gggcgcagat agggaccaga aaaagaaatt ttacttctgg tcagcagtag ggctttcaat
     2701 gattggtgta atggcgacgg cgctggtttg gatgaattcg gttaacaaat cgaatactgc
     2761 gacttcttca agttcaacaa gtacaagcca gacgtcatca acagcatcaa gttcgacaga
     2821 tgcgaatgtg actgcttttg aacagctcta taatagtttc tttacggata gtagtttgac
     2881 caagctaaaa aattcagagt ttggcaaatt agcagaactg aaagtgctgt tggaaaaatt
     2941 ggataagaat tcggacagtt ataccaaagc taaagaacag tatgatcatc ttgaaaaagc
     3001 cattgcagcc attcaggcca ttaatggtca gtttgataaa gaagtcgttg ttaatggtga
     3061 aattgataca acggcgacgg ttaaatcagg agaatctctt tctgcgacaa cgacagggat
     3121 tagtgcggtt gacagtctat tggcatcggt cgtgaatttt ggtcgttcac aacaggaagt
     3181 tgcttcggct acggtagcaa gcgaggttgc agccacaagc aaccaaggtg ctgatgaaac
     3241 tgtatctact ggtgtaccag cgacaacaga agtcgcttca acaacggttt caggctcaac
     3301 aaccgacttt ggtattgccg tgccagctgg tgtcgtcttg caacgtgacc gcagtcgagt
     3361 tccttataat caagcgatga ttgatgatgt aaacaatgaa gcatggaatt tcaatccagg
     3421 tattcttgaa aatattgtga ctatttcgca acaacgtggg tatataacag gcaatcaata
     3481 tatcttggaa aaagttaata ttatcaacgg caatggctac tacaatatgt ttaaaccaga
     3541 tgggacctac ttgttctcta taaattgtaa gacaggttac tttgtcggta atggtgctgg
     3601 tcattctgat gccttggatt attaagtaaa aaagcggttt agtcg
//
LOCUS       DASFRC010000195         3522 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.195, whole genome shotgun sequence.
ACCESSION   DASFRC010000195 DASFRC010000000
VERSION     DASFRC010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3522)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3522)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3522
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.195"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..368
                     /locus_tag="U1087_002053"
     CDS             <1..368
                     /locus_tag="U1087_002053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HEM4756483.1"
                     /translation="LILQSKVDEARNLVRDLRLQGEEEVKLIAIMLTQFRTYLQVQIL
                     VEQGRGEQQIVAELSTIMGRKVNPYQVKYALRDSRHLSIGFLKKVVKLLIDTDFQIKT
                     GQFDKDYLFDLLLLKIATT"
     gene            481..1086
                     /locus_tag="U1087_002054"
     CDS             481..1086
                     /locus_tag="U1087_002054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000974722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HEM4756484.1"
                     /translation="MAIILPDLPYAYDALEPHIDAETMTLHHDKHHATYVANANAALE
                     KHPEIGEDLVALLSDVEQIPADIRQALINNGGGHLNHALFWELLSPEKTGISAELAAD
                     IDATFGSFDAFKEAFTAAATTRFGSGWAFLVVNKEGKLEVISTANQDTPIMQGLKPIL
                     ALDVWEHAYYLNYRNVRPSYIKAFFEVINWDKVNELYKAAK"
     gene            1348..3372
                     /locus_tag="U1087_002055"
     CDS             1348..3372
                     /locus_tag="U1087_002055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional metallophosphatase/5'-nucleotidase"
                     /protein_id="HEM4756485.1"
                     /translation="MKKNIRLKSSILALVAGFSVIATQAVLADELAVQIMGVNDFHGA
                     LDMTGTARLEGETVRNAGTAALLDAYMDDSQAEFEETAAETETPAESIRVQAGDMVGA
                     SPSNSGLLQDEPTVKVFNKMDVEYGTLGNHEFDEGLDEYNRIMTGEAPKKGQFNEIVD
                     NYTREAAKQEIVIANVIDKETGEIPYGWKPYAIKTIPVNDKEAKIGFIGVVTTEIPNL
                     VLKKNYEQYTFLNEAETIAKYARELAEKGVNAIVVLAHVPATSKDGVAAGEAADMIAK
                     LNEIYPEHSVDLVFAGHNHVYTNGTTGKTLIVQATSQGKAYADVRAVYDTDIADFKAV
                     PTAKIIAVAPGQKTPSPEIQAIVDEANTIVKKVTEQKIATASQATDISREVNEFKESA
                     VGNLVTSAQLAIAKKSGYDVDFAMTNDGGIRADLKVQEDGTVTWGAAQAVQPFGNILQ
                     VVQMTGEQIYTALNQQYDEGEKYFLQMSGIKYIYTKADNPTEENPYKVVKAFKEDGTE
                     IVPTETYTLVINDFLFGGGDGFSIFKEAKLIGAINPDTEVFVEYLTDLEKAGQTISAT
                     IPGRKAFVEKYVEEPKAEEKEDNAGTTTDAKTPEKANDGGDSVTNQKANEQPAPSGSM
                     APISNKKTEKASGNQTLPNTGQEALGSLLISLGGLVSLGMAVSVRRKEGE"
BASE COUNT         1181 a          589 c          788 g          964 t
ORIGIN      
        1 agttaattct acaatccaag gtagacgagg ctcgcaactt agttcgtgac ttgcggttgc
       61 aaggggagga agaggttaag ttgattgcca ttatgttaac ccaatttcga acctatctac
      121 aagtgcaaat actagtagag caaggccgag gggaacagca gatagtagct gagttatcaa
      181 ctattatggg gcgtaaggtg aatccatacc aagtaaagta tgctttgcgt gattcacgcc
      241 atctgtccat tgggtttttg aaaaaagtcg tcaagctcct aatcgataca gattttcaaa
      301 ttaaaaccgg ccaatttgat aaggattatt tatttgattt gctattatta aaaatcgcaa
      361 ctacatagta aaaagagtat ttttagattg agggtcaacc gtggtttcag acaaataaat
      421 tgaaaagtct ctcacattgg agtagaatag aactatcact tagtatagga gaaaacgaaa
      481 atggcaatta ttttaccaga ccttccatac gcatacgatg ccttggaacc acatattgat
      541 gcagaaacaa tgacccttca ccacgataag caccatgcga cttatgttgc aaatgctaat
      601 gcagcacttg aaaaacatcc tgaaattggc gaagacttgg tagctctttt gtcagatgtg
      661 gagcaaattc cagctgacat ccgccaagct ttgatcaaca acggtggtgg tcatttgaac
      721 catgctcttt tctgggaatt gctttcacct gaaaaaacag gaatttcagc agaattggca
      781 gcagatattg atgcaacctt tggttcattt gatgctttca aagaagcctt cactgcagca
      841 gcaacaactc gtttcggttc aggttgggct ttcttggttg ttaataaaga aggcaagttg
      901 gaagttatct caactgctaa ccaagacaca ccaatcatgc aaggtttgaa accaatcttg
      961 gcattggacg tttgggaaca tgcttactac cttaactacc gcaatgtccg tccaagctac
     1021 atcaaagcct tctttgaagt aatcaactgg gacaaggtta acgaacttta taaagcagct
     1081 aaataagaac agttctcttc cgtttggaag agatttttaa gttgtgagga gtattttgga
     1141 gagaactgtg taagggcaga gggatgattt ttcgtattat ggataaaaac aacaagatat
     1201 tttcagaaaa atgatgtaaa agtaagaata aacgaatatt tttataattt tttgttataa
     1261 atgactgatt taatattgaa aagctgtaaa aaaaggatta ttatagatat gtcaatataa
     1321 aaaaatagaa ggagcattgt tttgcttatg aaaaagaata ttcggttgaa aagcagtata
     1381 ctagctcttg tagctggttt tagcgttatt gcaacacaag ctgttttggc agatgaatta
     1441 gctgtccaaa ttatgggagt taatgatttc catggtgcgc ttgatatgac ggggacagcg
     1501 cgattggaag gggaaacagt tcgtaatgca ggaactgctg ctttacttga tgcttacatg
     1561 gatgattcac aagcagaatt tgaagaaaca gcagcagaaa cagagacacc tgcagagtct
     1621 atccgtgttc aagctgggga tatggttggt gcaagtccat cgaattctgg acttttgcaa
     1681 gatgaaccaa ctgtaaaagt ctttaataaa atggatgttg aatacggaac tttggggaac
     1741 catgagtttg atgagggact tgatgagtat aaccgtatca tgactggtga agctccaaaa
     1801 aaaggtcagt ttaatgagat tgtagataat tatactcgtg aagctgctaa acaggagatt
     1861 gttattgcta acgttattga caaagaaacg ggtgaaattc cgtatggttg gaagccctac
     1921 gctattaaga ctattcccgt gaatgataag gaagctaaga ttggctttat tggtgtagtt
     1981 acgacagaaa ttcctaatct tgttttgaag aaaaactatg agcagtacac ttttttgaat
     2041 gaggcagaga cgattgctaa atatgcgcgt gagttagctg aaaaaggtgt aaatgcgata
     2101 gttgtactgg ctcacgttcc ggctacaagc aaggatggtg tggctgctgg cgaagctgca
     2161 gatatgattg ctaagctaaa tgaaatctat cctgaacact cagttgacct tgtatttgct
     2221 ggccataacc atgtctatac aaacggtaca acgggcaaaa ccttgattgt tcaagctacc
     2281 tcacaaggta aggcttacgc agatgttagg gctgtttatg atacagatat tgccgacttt
     2341 aaagctgttc cgactgcgaa aattattgca gtagcaccag ggcagaaaac accaagtccg
     2401 gaaattcagg caattgtaga tgaggcaaat accattgtta aaaaagtaac tgagcaaaaa
     2461 attgctacag ctagtcaagc gacagatatt tcacgcgaag tgaatgaatt taaagaaagt
     2521 gctgtaggta atctagtaac atcggctcaa ttagctatcg ctaagaaatc gggttatgat
     2581 gttgactttg caatgacaaa cgatggcggg attcgggcag atttgaaggt ccaagaagat
     2641 ggaacagtta cttggggagc agcacaggct gttcaaccat ttgggaatat cctacaagtc
     2701 gttcaaatga ccggtgagca gatttataca gccttaaatc aacaatatga tgaaggtgaa
     2761 aaatatttcc ttcaaatgtc tggaattaaa tatatctaca cgaaggctga caatccaacg
     2821 gaagaaaatc cttataaggt tgttaaagcc ttcaaagaag atgggacgga gattgttccg
     2881 acagaaacct atacacttgt catcaacgac ttcttatttg gtggtgggga tggcttctcg
     2941 attttcaaag aagctaaact gattggtgct atcaatccag atacagaagt atttgtggag
     3001 tacttgactg atttagaaaa agcaggtcaa accattagtg caacaattcc aggtagaaaa
     3061 gcatttgtag agaagtacgt agaagaacca aaagcagaag aaaaagaaga taatgctggg
     3121 acaactactg atgcgaaaac acctgagaaa gcaaatgacg gtggcgatag tgtaacaaat
     3181 cagaaagcaa acgagcaacc ggcaccatct ggaagtatgg ctcctatttc aaataagaaa
     3241 actgaaaaag catcaggaaa tcaaacactt ccaaataccg gtcaagaagc cctaggctca
     3301 cttcttatta gcttgggtgg cttagtttca ctcggaatgg ctgtctcagt gagacgtaag
     3361 gaaggggagt aggaatcaag cataaaaacg acaaactttc gaagtacatt ctagaattac
     3421 ttcttttaga gactattatg agagaaatac ataaaaacaa ttgtgtttta tcttagagta
     3481 ggttctgctt tttgtaaaga tttggaaaaa cttatataca cg
//
LOCUS       DASFRC010000196         3460 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.196, whole genome shotgun sequence.
ACCESSION   DASFRC010000196 DASFRC010000000
VERSION     DASFRC010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3460)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3460)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3460
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.196"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(22..504)
                     /locus_tag="U1087_002056"
     CDS             complement(22..504)
                     /locus_tag="U1087_002056"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HEM4756486.1"
                     /translation="MKKEVTVESFELDHTIVKAPYIRLISEEVGPKGDIITNFDIRLI
                     QPNENAMDTAGLHTIEHLLAKLIRQRIDGLIDCSPFGCRTGFHMIMWGKQDSEKIAQV
                     IKSSLEEIAEGITWEDVPGTTIESCGNYKDHSLHSAKEWAKLILSQGISTDAFERKPI
                     "
     gene            633..2246
                     /locus_tag="U1087_002057"
     CDS             633..2246
                     /locus_tag="U1087_002057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009659039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HEM4756487.1"
                     /translation="MNIITVVVTLVSALIGLVLGYFAISLKMKSAKETAELTLLNAEQ
                     EASNVRGRAEEQAEVILKTAERDRQTLKKELLLEAKEEARKYREEIAEEFKSERQELK
                     QIESRLTERATSLDRKDDNLTNKEKTLEQKEQSLTDKAKHIDEREQEVVKLEEQKALE
                     LERVAALSQEEAKEIILTDTRDKLTHEIATRIKEAEREVKERSDKMAKDLLAQAMQRI
                     SGEYVAEQTITSVHLPDDAMKGRIIGREGRNIRTFESLTGIDVIIDDTPEVVVLSGFD
                     PIRREIARMTMETLLQDGRIHPARIEELVEKHRVEMDNRIREYGEAAAYEVGAPNLHP
                     DLIKIMGRLHFRTSYGQNVLRHSIEVAKLAGVLAAELGENVNLARRAGFLHDVGKAID
                     REVDGSHVEIGTELAKKYKENPIVINAIASHHGDVEATSTIAVIVAAADALSAARPGS
                     RRESMEAYIKRLQDLEEIANSFEGIKQSYAIQAGREIRIIVHPNKVTDDQITILAHDV
                     REKIENNLDYPGNIKITVIRETRATDVAK"
     gene            2401..3027
                     /gene="gmk"
                     /locus_tag="U1087_002058"
     CDS             2401..3027
                     /gene="gmk"
                     /locus_tag="U1087_002058"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HEM4756488.1"
                     /translation="MKERGLLIVFSGPSGVGKGTVRKEIFESSDNKFEYSVSMTTRPQ
                     RPGEVDGVDYFFRSREEFEDLIRQGQMLEYAEYVGNYYGTPLTYVNETLDKGIDVFLE
                     IEVQGALQVKKKVPDGVFIFLTPPDLEELQDRLIGRGTDSEEVIAQRIERAKEEIALM
                     REYDYAVVNDEVPLAAERVKRIIEAEHFRVDRVIGRYDEMIREQIAER"
     gene            3051..3365
                     /locus_tag="U1087_002059"
     CDS             3051..3365
                     /locus_tag="U1087_002059"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001817694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HEM4756489.1"
                     /translation="MMLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGAKPTQEFTSV
                     KSTLRALEEIESGNVVIHPDPEAKREAVRRRAEEAKRLAEEEERKIKAQIAKEKEEGE
                     KI"
BASE COUNT         1063 a          602 c          839 g          956 t
ORIGIN      
        1 gcggtgtatc cgcttttttt gttagattgg ttttctttca aaggcatcgg tagagattcc
       61 ctgagaaagg attagtttgg cccattcttt agctgaatga aggctgtggt ctttgtagtt
      121 accacatgat tcaatggttg ttccaggaac atcctcccaa gtgatgcctt ctgcaatttc
      181 ttccaaactc gatttgatga cttgagcaat cttttcagag tcttgttttc cccacataat
      241 catgtggaaa cctgtccgac acccgaaagg agagcagtcg attagcccat cgatgcgctg
      301 gcgaattagt ttagctaata gatgctcaat ggtatgtaga ccagctgtat ccattgcatt
      361 ttcgttgggt tggataaggc gaatatcaaa gtttgtaata atgtctcctt ttggtccgac
      421 ttcttcagaa attaagcgga tgtaaggtgc ttttacaata gtgtggtcta gctcgaagct
      481 ttcgacagtg acttcttttt tcatggtttc ctccaaataa gtgatgaatt tattatacca
      541 tatttgacaa tttggaattg tgaaatcgtt tcaaatatga taaaatagat acagattttg
      601 tgaaaatcga attataaaaa agaggtagaa atatgaatat cattacagta gtagtgacac
      661 ttgtttctgc tctcattggt ttagtattag gttactttgc catttctttg aagatgaaat
      721 ctgcaaaaga aactgcagaa ttgacacttt taaacgcaga acaagaagct agtaatgttc
      781 gtggtcgagc agaagagcaa gctgaggtta ttctaaaaac agctgagcgc gatcgccaga
      841 ccttgaaaaa agaattactc ttggaagcta aggaagaagc tcgtaagtac cgagaagaaa
      901 ttgcagaaga atttaagtca gaacgtcaag agttgaagca aattgaatca cgcttgacag
      961 agcgtgcgac cagtttggac cgcaaagacg ataatttgac caacaaggaa aagactttgg
     1021 aacaaaagga acaaagtctg accgataaag ctaagcacat tgatgagcgt gaacaagaag
     1081 ttgtaaaact cgaagaacaa aaagctttgg agttagaacg agtggcggcc ctcagtcaag
     1141 aagaagcaaa ggaaatcatc cttaccgata cacgtgataa actgacgcat gaaattgcga
     1201 ctcgtatcaa ggaagcagag cgtgaagtaa aagaacgttc tgacaagatg gcaaaggact
     1261 tgttagccca agcgatgcaa cgtatatcag gtgaatatgt ggctgagcag acgattacat
     1321 cggttcattt accggatgat gcgatgaagg gacggattat tggacgtgag ggtcgaaata
     1381 ttcgtacctt tgaaagtctc acaggtatcg atgttatcat tgatgataca ccagaagtgg
     1441 ttgttctatc aggttttgat ccgattcgcc gtgagattgc ccgtatgacc atggagacct
     1501 tgcttcaaga tggtcgtatt catccagctc gtattgagga gttggttgag aaacatcgtg
     1561 tagagatgga taaccgtatt cgtgagtacg gggaagctgc tgcttatgaa gttggggcac
     1621 caaaccttca tccagacttg attaaaatca tggggcgttt gcatttccgt acctcttatg
     1681 gacaaaatgt tcttcgccac tcaatcgaag ttgctaaatt agcaggtgta cttgctgctg
     1741 aattgggcga gaatgtgaat ttggcacgtc gagctggttt cctacatgac gttggtaaag
     1801 ctattgaccg tgaggtggat ggaagccacg ttgaaatcgg tacagaatta gctaagaaat
     1861 ataaagagaa tccaattgtt atcaatgcga ttgctagtca ccatggcgat gtagaagcaa
     1921 caagtactat tgcagtcatt gtggctgcgg cagatgctct gagcgctgct cgtccaggtt
     1981 cacgtcgtga atctatggaa gcctacatca aacgtctgca agacttggaa gaaatcgcca
     2041 acagttttga agggattaaa caatcctatg ctattcaggc tggtcgtgaa attcggatta
     2101 tcgttcatcc taacaaggtc actgatgatc agattaccat cttggcccat gatgttcgtg
     2161 agaaaattga aaataatctg gattatccag gaaatatcaa aatcacagtt atccgtgaaa
     2221 caagagcaac agatgttgct aagtaaatgt agaagagtcc gaagggctct ttttctactg
     2281 gctcaaagtt cgttttgggt tgggaataga aaatagaaaa tattttaatc gtatttaaaa
     2341 gcagttgaaa ttcatgctaa attttgttac actagaatga aagatttaaa aggagatatc
     2401 atgaaagagc gaggcttact cattgtcttt tctggtccat ctggtgttgg aaaaggaaca
     2461 gttcgaaagg aaatttttga aagctctgat aataaatttg aatattctgt atccatgacg
     2521 acacgtccac agagaccggg agaagttgat ggagttgact atttcttccg tagtcgtgag
     2581 gaatttgaag atttgattcg ccagggtcaa atgttggaat atgcagagta cgttggaaat
     2641 tactatggaa cacctctgac ctatgtcaat gaaactcttg ataagggaat tgatgtcttt
     2701 ttagaaattg aagtacaggg tgccctccaa gtgaagaaaa aggttccaga tggggtgttc
     2761 attttcttga caccacctga cttggaggag ttgcaggatc gcttgattgg tcgcggaacg
     2821 gatagtgagg aagttattgc tcaacgtatc gaacgtgcca aggaagagat cgccttgatg
     2881 cgtgagtatg attatgcagt tgtgaacgat gaagtcccgt tggctgctga gcgtgtcaag
     2941 cgtattatcg aagcagaaca tttccgtgta gaccgagtga ttggtcgcta cgatgaaatg
     3001 attcgtgaac agatagcaga acgataaaag aaagaagaga gaatcgcatt atgatgttga
     3061 agccgtcaat tgataccttg ttggataagg taccatctaa gtattctttg gttattcttg
     3121 aggctaagcg tgcccatgaa ttggaagcag gtgccaagcc aactcaagaa ttcacctcag
     3181 tgaaatccac cctacgcgcc ttggaagaaa ttgaatcagg taatgtagtc atccacccag
     3241 acccagaagc gaaacgtgag gctgttcgtc gccgtgccga agaggctaaa cgtttggcgg
     3301 aagaagaaga gcgtaaaatc aaagctcaaa ttgctaaaga aaaagaagaa ggcgaaaaga
     3361 tttagaaaca agactcggtt gggattgcca tccgggtttc ttttcacttt cggaatgatg
     3421 aaagttttga cagaaaggag gcaggtcatt tagtttatct
//
LOCUS       DASFRC010000197         3390 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.197, whole genome shotgun sequence.
ACCESSION   DASFRC010000197 DASFRC010000000
VERSION     DASFRC010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3390)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3390)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3390
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.197"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            431..790
                     /locus_tag="U1087_002060"
     CDS             431..790
                     /locus_tag="U1087_002060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756490.1"
                     /translation="MGQEIKLIRKQFRITRQEEKQIKEMMREQKLDSFSEFLRQNLLK
                     KNYQDRIFESWFSLWQSQKFEQISRDVHEVLVVARENHQVTQEHVSILLTCVQELIAE
                     VNQVQPLSRRFREKYMR"
     gene            800..1165
                     /locus_tag="U1087_002061"
     CDS             800..1165
                     /locus_tag="U1087_002061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000263054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="HEM4756491.1"
                     /translation="MVYRYRTNLKKVFLTDSELHQLNERIDKSHCQNFSVYARKVLLN
                     PNMSFVTINTDTYDQLVFELRRIGNNINQIARAINQSHLISQEQLQELSKGVSELITG
                     VEKEFQVEVKRLREFHGSH"
     gene            1152..3014
                     /locus_tag="U1087_002062"
     CDS             1152..3014
                     /locus_tag="U1087_002062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="HEM4756492.1"
                     /translation="MVVTKHFATHGKKYRRRLIKYILNPGKTDNLKLVSDFGMSNYLD
                     FPSYEEMVEMYNVNFTNNDKLYESRNNRQEKHQQNIHAHHLIQSFSPEDNLTPEEINR
                     IGYDTMMELTGGRFKFIVATHTDKDHVHNHILINAIDRNSDKKLIWNYALERNLRMIS
                     DRISKIAGAKIIEKRFSYRDYQKYRQSSHKFELKQRLYFLMQHSKSFDDFLEKAVQLH
                     VHIDFSQKHSRFMMTDRAMTKPIRGRQLSKRDLYDEEFFRTYFAKQEIESRLEFLLGR
                     VNSLEALLTKAKELNLTIDLKQKNVVFTLEENGKQISLSHKKISEKKLYDAAFFQNYF
                     EDKELVSSEVVESLREQYHAFQEERDKEKVATEDIEEAFEEFKKKRDAVHEFEAELAE
                     HQIEKLVDEGIYIKVSFGIKQSGLVFIPNYQLDIIEEDNQKKYKVYIRETTSYFVYNQ
                     EYSDKNQYIKGQTLIRQLTNDSRKIPYRRPTIEKLQEKISEINFLIELTETDKKYQDI
                     KDELVAGIAELDIVLNQTNEKIATLNKMAEVLINLKSDDPSSRKLARYEFSKLNLTEL
                     ITLEQVTEEIRVLQEELGHYLDEYEGLVKKLEMFVKVLNDKDFDKKFSIEILLE"
     gene            complement(3058..>3390)
                     /locus_tag="U1087_002063"
     CDS             complement(3058..>3390)
                     /locus_tag="U1087_002063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000837481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rgg/GadR/MutR family transcriptional regulator"
                     /protein_id="HEM4756493.1"
                     /translation="MLKNYVYSTLNKTNKRLVTQLAINCLIVSIDKEEFQNCNFLIKE
                     VKKLLNNELNYYEQTVFLYTCGYFEFKCNPANGIEKMKKALQVFEILGEHNIKAQYQE
                     HYDKYINQ"
BASE COUNT         1195 a          513 c          652 g         1030 t
ORIGIN      
        1 tataagaatg cttaaaagtt ttatagagaa agatattttt caaataattt tcgaagaatt
       61 gcttagaaaa aatagtagtt tgacataaat atatttccga gagcgttcag ctctcttttt
      121 tcttactctc atttttcata ctgtgataac ttttccaaat catccctgtt atccttatat
      181 cattcctaag aaaatcaagt cttgattttc tactgggggt ttgggggcga agccaccaag
      241 ttatcttatc gttggctgtc aaaactggaa ggtttttgtc agctggcgat atgatttttt
      301 gggtattgtg accacaatgc ctgagctcgc aaagaccgaa caagaagaga gtgaggtctt
      361 taggaagcgt actgacaatg tgaggcagcc tgacattgtc agacaagtat aatgttgaaa
      421 ggatagtagg atgggacaag aaattaagtt aatccgtaag caatttagga tcacgagaca
      481 agaagaaaaa cagataaaag aaatgatgag ggaacaaaaa ctggatagtt tctcagaatt
      541 tcttcgtcaa aatttattga aaaagaatta tcaggataga atttttgaaa gttggttttc
      601 cctttggcaa tctcaaaagt ttgaacaaat tagtcgagat gtgcatgaag ttctagttgt
      661 cgcaagagaa aatcaccaag taactcaaga acacgtttca atcttattga cctgcgttca
      721 agaattgatt gcggaagtca atcaagtaca gccgctcagt cgtaggtttc gtgaaaaata
      781 tatgagatag ggggctacta tggtttatcg ttatcgtacc aatctcaaaa aagtatttct
      841 aactgattca gagttacatc aattgaatga gcgaatcgac aagagtcact gtcaaaattt
      901 ttcagtctat gccagaaaag ttttgcttaa tcccaatatg tcatttgtca ccattaacac
      961 tgatacctat gaccagttag tatttgaatt gagacggatt ggaaataaca ttaatcaaat
     1021 tgcgcgtgcc attaatcaaa gtcatctgat ttctcaagaa cagttacaag aattaagtaa
     1081 gggagttagt gagttgatta ctggagtgga gaaagaattt caagtggaag tgaaaagact
     1141 gagggagttt catggtagtc actaagcact ttgcaacgca cgggaaaaaa taccgtaggc
     1201 gtctgattaa gtatatcctc aatcccggta aaacggacaa tttgaaattg gtatctgatt
     1261 ttggcatgag caattactta gactttccta gctatgaaga aatggtagaa atgtacaatg
     1321 tcaactttac caataacgac aagttgtacg aatccagaaa taaccgacaa gaaaaacatc
     1381 aacaaaatat ccatgcccat cacctcattc aatcattttc tcctgaagat aatctgacac
     1441 ctgaagaaat taaccgtatt ggttatgata ccatgatgga attaacagga ggtcgcttta
     1501 agtttatcgt agcgactcat acagacaaag atcatgttca taatcacatc ctaatcaacg
     1561 ccattgaccg taattcagat aaaaagttga tatggaatta tgccttggaa cgaaaccttc
     1621 gtatgatttc agaccgaatt tctaagattg ctggagcgaa aattattgaa aaacgtttct
     1681 cctaccgtga ctatcaaaaa tataggcagt ctagtcataa atttgaattg aagcaacgtc
     1741 tttatttttt gatgcagcac tcaaagtcct ttgatgattt tttagaaaaa gcggtgcagt
     1801 tacatgttca tattgatttt agtcagaagc atagtcgatt catgatgaca gatagagcta
     1861 tgacaaagcc aattcgagga cgccaactca gtaaacgaga tttatatgat gaagaatttt
     1921 ttcgtacata ttttgccaag caagagattg aaagtcgatt agaatttctt ttggggcgtg
     1981 tcaattcttt agaagcatta ctgacaaaag cgaaagaatt gaatctaacc attgacttga
     2041 aacaaaaaaa tgttgtcttt actcttgaag aaaatggcaa gcagataagt ctgagtcata
     2101 aaaaaataag tgagaaaaag ttgtatgatg ctgccttttt tcagaattat tttgaagata
     2161 aggagttggt ttcctcagaa gtagttgaaa gtcttcgaga acaatatcat gcttttcaag
     2221 aagaacgtga taaggagaag gtagccactg aagacattga ggaagccttt gaggaattta
     2281 agaagaagcg agatgccgtt catgagtttg aagcggagct tgcagaacac caaattgaga
     2341 agttagttga tgaggggatt tatatcaagg tgtcttttgg tattaagcag agtggccttg
     2401 ttttcattcc caactatcaa ctagacatta ttgaagaaga caatcagaaa aaatataaag
     2461 tttatattcg tgagacaact tcatactttg tctataacca agaatattcg gataagaatc
     2521 agtacatcaa ggggcaaact ttgattagac agttgaccaa cgatagtcgg aagattccat
     2581 acagacgacc aactattgaa aaacttcaag aaaaaatttc tgagattaac tttttgattg
     2641 agttgaccga gacagataaa aaatatcaag atattaaaga cgaactggtc gcaggaatag
     2701 cagaactaga catagtatta aatcaaacca atgaaaaaat cgccacctta aacaagatgg
     2761 cggaagtgct tatcaatttg aagagtgatg atccgagcag tcgaaaacta gcaaggtatg
     2821 aattttcaaa actaaattta acagaattaa ttacactaga acaagtgacc gaagaaataa
     2881 gagtattgca ggaggaactc ggtcattatc ttgatgagta tgagggatta gtaaaaaagc
     2941 tagaaatgtt tgtaaaagta ctgaatgata aggattttga taaaaaattt agtatagaaa
     3001 tactattgga ataacaagaa ctaatcctat ggtggttaaa gattaactat ctttatgcta
     3061 ttgattaata tatttgtcat agtgctcttg gtactgtgct tttatattat gttctcctag
     3121 aatttcaaat acctgaagtg cttttttcat cttttcgatt ccgttcgcag gattgcactt
     3181 aaattcaaaa tatccacatg tatataagaa gacggtttgt tcataatagt ttaattcatt
     3241 atttagtaat ttttttactt ctttgattag aaaattacaa ttttgaaatt cttctttatc
     3301 aatactaaca attaggcaat tgattgccaa ttgtgtaaca agccgtttat ttgtcttatt
     3361 caatgttgaa tagacataat tttttaacat
//
LOCUS       DASFRC010000198         3348 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.198, whole genome shotgun sequence.
ACCESSION   DASFRC010000198 DASFRC010000000
VERSION     DASFRC010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3348)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3348)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3348
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.198"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..829
                     /locus_tag="U1087_002064"
     CDS             <1..829
                     /locus_tag="U1087_002064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transketolase family protein"
                     /protein_id="HEM4756494.1"
                     /translation="SSMATNKLSSVLGGRYVNVGIMEQEMVGVAAGLSLLGYNPYIHT
                     FGPFASRRVYDQVFISLAYAQLNATVIGSDAGVSAEMNGGTHMPFEELGLMRLIPKAR
                     VYEVSDDIQFHAVLEETTQLDGLKYIRTIRKAPTAIYQGGEDFSKGYCVLRQGEDMTL
                     LASGIMVEQALKAADQLEAQGVSVQVIDLFRIKPIHEDIPALLSGRPVLTVENHNRIG
                     GLGSSICELMATDLTTPVHRIGIEESFGQVGQQAYLMDVYGLTAEHIVKQAQSMLQQ"
     gene            complement(917..1465)
                     /locus_tag="U1087_002065"
     CDS             complement(917..1465)
                     /locus_tag="U1087_002065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM4756495.1"
                     /translation="MITIAPMTEDYLHTLWKIGHREAAPRWKEFAAPYFDDYQACATF
                     EDFQALELYQWLQKDCVRAILVDQLPIGFVSYYWECQPTRWLEIGIEIYDDKVWGKGY
                     GTAALQLWIDTIFQQFTELEHIGLTTWSGNKGMMRTAEKLGMTKEAHIRKVRYWQGHY
                     HDSIKYGILREEWVENKKKSSS"
     gene            1545..3311
                     /locus_tag="U1087_002066"
     CDS             1545..3311
                     /locus_tag="U1087_002066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HEM4756496.1"
                     /translation="MKKIQREFQKIYYNLDKILLLFFTLFTFMEFVWIPLNSWISEGL
                     LAMTGHAYLSPTNLLAVFAENPLVTGLFILLFFVNIAIAYLELALLFTGVWQLLDEKV
                     KHLPDYLRDVRDSMVAIIRHSSLPKVLFLLFYSVILLPSLRRVLNIYYFNKIVVPQFI
                     VDYLSNTVWLGILILFVLLLFFWLASRFMYALPNIYFEHRSVKESIAYSWKKTKGRKQ
                     VSSFFRLIWLVTFPVLLFTGIGILLYLVQLVAEPYLPDTGPSYWLAVVCYAILKLAYY
                     GVVALFMMGFVSLLTGKQLPNYRRKRLRHRLRLAILLVSSLVFGTQGALALYYPFDTL
                     PVTISHRGVDNGNAVQNSIEALEKTSQLKPDYIEMDVQETKDGQFIVMHDTDLLALTG
                     NPGGTHDYTLAELTGMTASENGMVAPVPSFDEYLEKADELGQKLLVEIKVTKADSPKL
                     TQNFLKKYGQRLIAKGHQMQSLDYRTIIEIKQYSEKLVSFFILPFNSIYPTTVADGYT
                     MEYTSLDQNFMTKSWIRGKSVYAWTPNEEESMTKMLLLQVDGIITDNMTDLQSLMEEM
                     KENRRYPDLFFQQFQSLIYNFE"
BASE COUNT          921 a          686 c          720 g         1021 t
ORIGIN      
        1 tagctctatg gccacaaata aactgtcctc tgttctgggt ggacgttatg tcaatgttgg
       61 cattatggag caggaaatgg tgggggtagc ggctggtttg tcccttctgg gttataatcc
      121 atatattcac acctttggcc cctttgcaag tcgtcgtgtt tacgaccaag tatttatttc
      181 cttggcttat gcccagctta atgccacggt cattggttcc gatgcgggag tatcagctga
      241 gatgaatggc ggtacgcata tgccatttga agagttggga ctaatgcgac tgattccaaa
      301 agctcgtgtt tatgaagtca gtgacgatat ccagttccat gctgtccttg aggaaacaac
      361 acagctagac ggcctcaagt atattcgcac gattcggaaa gcgccaacgg ctatttatca
      421 aggtggagaa gattttagca aaggctactg tgttcttagg caaggggagg atatgacctt
      481 gcttgcgagt ggtattatgg tagagcaggc attaaaggcg gcggatcagt tagaggctca
      541 aggagtatct gttcaagtca ttgatctttt tcgtatcaaa ccaattcatg aagacatacc
      601 agctctatta tcaggaaggc cagtattaac tgtagaaaat cataatcgaa ttggtggact
      661 aggtagtagc atttgtgaat taatggctac agatttaacg accccagtac atcgaattgg
      721 tattgaggaa tcttttggtc aagttgggca acaagcttac ttaatggatg tatatggttt
      781 gacagcagag catattgtta aacaagcaca atcaatgtta caacaatagt gagatagtga
      841 ttcgtatttt atgtagcctt tcgatttact ttggcttgga aatagtagag caaatcaaaa
      901 gtaaaaaatc aagctcttag gaacttgatt ttttcttatt ctctacccat tcttctctta
      961 aaattccata tttgatagaa tcatgataat gcccttgcca gtatcgaacc ttgcggatat
     1021 gggcttcttt ggtcatgcct aatttttcag cggttctcat catgcccttg ttgccagacc
     1081 aggtagtgag cccgatgtgt tctaattctg taaattgctg gaaaatggta tcaatccaga
     1141 gttggagagc agctgtgcca tatccttttc cccagacctt atcgtcatag atttcaatcc
     1201 cgatttcgag ccagcgtgtt ggctggcact cccagtaata gctcacaaat ccaataggca
     1261 gctgatccac taggattgct ctgacacaat ctttttgtaa ccactggtag agttcaagtg
     1321 cttgaaaatc ttcaaaagtg gcgcaggcct ggtagtcatc aaaataggga gcagcaaatt
     1381 ccttccagcg aggtgcagct tcacgatggc caatcttcca aagtgtatgc aaataatctt
     1441 cagtcatcgg tgcaatcgta atcatgagaa cctcctttat ttttctagtc tagcatattt
     1501 gatgaaggct tgcaattcct gtcagaatat gggacactag aatcatgaaa aagatacagc
     1561 gtgaatttca aaaaatatat tacaacttag acaagattct tttgctcttt tttaccctgt
     1621 ttacctttat ggaatttgtt tggataccgc tcaattcatg gatttctgag ggactcttag
     1681 ctatgacagg gcatgcctac ctttcaccga cgaatttgtt ggcggtgttt gctgaaaatc
     1741 cgctcgtgac aggcttgttt attctcctct tttttgtcaa cattgccatt gcctatctag
     1801 aattagctct attgttcaca ggggtttggc aactgttgga tgaaaaagtc aagcacctcc
     1861 ccgactattt acgggatgta cgagatagta tggtggcgat tatccgtcac agcagcctac
     1921 caaaggtttt atttctgctc ttttactcag ttattcttct cccgtcttta cgacgggtat
     1981 taaatatcta ttattttaat aaaatcgtag taccccaatt tatcgtagat tacctatcca
     2041 acacagtttg gctaggaata ttgattttgt tcgttctcct cttgttcttc tggctcgcat
     2101 cacgctttat gtacgctctg ccgaacattt actttgaaca caggagtgtg aaggagtcca
     2161 tcgcttattc ttggaaaaag accaagggaa gaaaacaagt cagttccttt ttccgtctga
     2221 tttggctggt cacttttcca gtcctcctat tcacaggaat agggatattg ctctatctag
     2281 tacaactagt ggctgaacct tatctaccag acacaggtcc ttcatattgg ctggcagttg
     2341 tttgttatgc aatcctaaaa ttagcctact acggagtagt tgcactcttt atgatgggat
     2401 ttgtaagtct cttaacaggg aaacaattgc caaactaccg ccgtaaacgc ctccgtcatc
     2461 gcctgcgatt ggcaattttg ctagtatcca gtctggtatt cggtacacaa ggagcgcttg
     2521 cactctacta tcccttcgat accctgccag ttaccatttc ccatcgcggt gttgacaatg
     2581 gcaatgctgt ccagaactct atcgaggccc tagagaaaac ctctcaactc aagccagatt
     2641 atattgagat ggatgttcag gagacgaagg atggtcagtt tattgtcatg catgatacgg
     2701 atttattggc tttgacgggc aatcccggag gtacacatga ctatactctt gcagagttga
     2761 cagggatgac tgcatcagaa aacggcatgg tagctccagt tccttctttt gatgaatatc
     2821 ttgaaaaagc ggatgagctg ggacagaaat tattggtaga aattaaagtg accaaggcag
     2881 attcgccaaa actcacccag aatttcttaa aaaaatacgg tcaacgtttg attgccaaag
     2941 gacaccagat gcaatcatta gattaccgta ctattatcga aataaagcag tatagcgaga
     3001 aattagtatc cttctttatt cttccgttca attcaattta tccgacgacg gttgctgatg
     3061 gttatacaat ggaatacact tcgctggatc aaaattttat gaccaagtct tggattcgag
     3121 ggaagtcggt ttatgcttgg acaccgaatg aagaagagag tatgaccaag atgttgctgc
     3181 tacaagtgga cggtatcatc actgacaaca tgaccgacct ccaaagtctg atggaggaaa
     3241 tgaaagagaa tcgacgctat ccagacctct ttttccagca atttcagtct ttgatttata
     3301 attttgaata aaaaaatcgc gagaggagag tatccaatcg cgttttct
//
LOCUS       DASFRC010000199         3309 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.199, whole genome shotgun sequence.
ACCESSION   DASFRC010000199 DASFRC010000000
VERSION     DASFRC010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3309)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3309)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3309
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.199"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(740..1882)
                     /gene="tgt"
                     /locus_tag="U1087_002067"
     CDS             complement(740..1882)
                     /gene="tgt"
                     /locus_tag="U1087_002067"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HEM4756497.1"
                     /translation="MTDVPIKYRLIKKEKHTGARLGEIITPHGTFPTPMFMPVGTQAT
                     VKTMSPEELKEMGSGIILSNTYHLWLRPGDELVARAGGLHKFMNWDQPILTDSGGFQV
                     YSLADSRNISEDGVTFKNHLNGSKMFLSPEKAISIQNNLGSDIMMSFDECPQFYQPYD
                     YVKKSIERTSRWAERGLKAHRRPHDQGLFGIVQGAGFEDLRRQSAHDLVSMDFPGYSI
                     GGLAVGETHDEMNAVLDFTTPLLPENKPRYLMGVGAPDSLIDGVIRGVDMFDCVLPTR
                     IARNGTCMTSRGRLVVKNAQFAEDFTPLDPECDCYTCKNYTRAYLRHLLKADETFGIR
                     LTSYHNLYFLINLMKNVRQAIMDDNLLEFRQDFMEKYGYGKNGRNF"
     gene            2202..3044
                     /locus_tag="U1087_002068"
     CDS             2202..3044
                     /locus_tag="U1087_002068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF975 family protein"
                     /protein_id="HEM4756498.1"
                     /translation="MFTISNIRERARQTLNETPGIYQVAVIPVTISVIVQLISFSRNS
                     LAGVTTEELASPSYFISTSLFPIFYGLLLGLLHLSIICTIFHLIKGVKTSTSFNDVLM
                     IFNHKDFWKIFRTYILTSFLLFLWGLLFYLGIGLLIGAGTMITIIAASSQSLDPDALP
                     MEILAILGLMAMGGILLMVLGIALYIPQFYAYSQVEYILFEQLEREEYTGAFSIIRSS
                     RKLMKGYKFKRFTLDLSFIGWFLLVIITFGLAGLYVWPYHYAAQLHFHEEILDDQAKK
                     MSYV"
BASE COUNT         1010 a          674 c          582 g         1043 t
ORIGIN      
        1 aggctttcca aatggaaatc atgattgaaa tctgctgtaa cattgatgtc taccagtaat
       61 ccatattggt tgaattctat acaggacact atataccaat aaacctaaga aaattcagaa
      121 taaattcgga ataacaactt agccccatca aaaggctcaa actttgtaat acgtcgtata
      181 agacagtctt gtacaaaagc tggtgagaga ttctacgtag attacttgat caatcgagaa
      241 ttcacagccc aaaaccaaat attgaataat gatatcacat aattacaata cagtttaggt
      301 gtcagaactt atctcaatgc tattaaatag aaatatgatt gtgttctatc atctcttatg
      361 agaattgtca tcataatgtt agcccactag atatgaagac cattaagaag gcattggagc
      421 taaatccagg tgcaacacct ctgattcaca gcgatcgtgt agccagcata cttacaatta
      481 atctcaagaa ggttacagaa aacttttgta caaaatttga agaattaact ttcagttaac
      541 accaattaca aaatgtagtg tttagacaat aaaaaaaagc gatttccaaa aatgaactgc
      601 accccaaaag ttagacacaa aatctaacga ttggggtgtt tttcttatga aattaagtta
      661 gaaattatag agccaaatta ttttaatcat gcttattatc gaaagttcat tttcaaatat
      721 tttagggtta ttttcaacgt taaaagtttc taccattctt gccataacca tatttttcca
      781 taaagtcttg acggaactcc aataaattat catccataat ggcttgacgg acatttttca
      841 tcaaattaat caagaagtag aggttgtgat aacttgtcaa acgaatacca aacgtctcgt
      901 cggccttaag taaatggcgg agatacgcac gtgtatagtt tttacatgtg tagcaatcgc
      961 actctggatc taacggtgta aagtcctcag cgaactgagc atttttcacc acaagacgtc
     1021 cacgactggt catacaggtt ccattacgcg caatacgtgt tggtaataca cagtcaaaca
     1081 tatcaacccc acgaatcacg ccatcaatca agctatctgg tgctccaaca cccatgagat
     1141 agcgtggttt attctccggt aaaagagggg tcgtgaagtc cagtacagca ttcatttcat
     1201 cgtgtgtttc accaacagcc aatcctccaa tagagtatcc tggaaaatcc atgctaacca
     1261 aatcatgggc tgattggcga cgaagatctt caaaaccagc accctgtaca ataccaaata
     1321 aaccttggtc atgcggacgg cggtgagcct tgagaccacg ttctgcccaa cgacttgttc
     1381 tttcgatgga tttttttaca taatcataag gctggtagaa ctgcggacac tcatcaaagc
     1441 tcatcatgat gtctgagcct agattgtttt gaatggaaat ggccttttca ggtgacagga
     1501 acatcttact accattgaga tggtttttaa atgtaacacc atcttctgag atattgcgac
     1561 tatcggccaa ggaataaacc tgaaagccac ctgagtcagt caaaatcggt tgatcccaat
     1621 tcataaactt gtgcaaacca cctgcacgcg ccaccaattc gtcacctgga cgaagccaca
     1681 aatgataggt attggacagg ataatgcctg aacccatctc tttcaattct tcaggcgaca
     1741 tggtttttac cgttgcctga gttccaactg gcataaacat tggagttgga aaggtcccgt
     1801 gtggggtaat gatttcgccc aaacgtgcac ctgtgtgctt ttctttctta atcaagcgat
     1861 acttgattgg aacatctgtc atgttttatt tacctcccgc taggaaaaac agtcctagga
     1921 tattagttct ggattcacag ttcagctctt tcatatcatc cataaaagta ctttacctgg
     1981 aaatacagtt tctcaatctt gcatggtcta atccatcaga atgtctttaa tgttctcgct
     2041 tatttcagcg atatttacct tatcttctac ttatttaatg gtaaatagac aggcgcatca
     2101 caacaaactg acaaattacc acagcacctt ccagtctatc aaaaaaagcc tagcttgtca
     2161 tctagaatta tgttacaata ttcagcaagg aggttatgta gatgtttaca atttctaata
     2221 tacgtgagcg ggctcgccaa acactaaacg agacacctgg tatatatcaa gtggccgtca
     2281 tccccgtcac tatttctgtt atcgttcagt taatttcttt ctctcgcaat agccttgctg
     2341 gagtaacaac tgaggaactt gctagtccta gctactttat ttctacctcc ttgtttccaa
     2401 tattttacgg attgctatta ggactactgc acttatccat tatatgcact atatttcatc
     2461 ttatcaaagg ggtaaaaact tccacatcat ttaacgatgt gctgatgatt ttcaatcata
     2521 aagatttctg gaaaatcttt cgaacctaca ttttaacaag tttcttgctc ttcctttggg
     2581 gactactgtt ttaccttggt attggtttac ttatcggtgc tggaacgatg attacaatca
     2641 tagctgcatc cagtcaatcc ttagaccctg atgcacttcc tatggaaatc cttgccatac
     2701 tagggctaat ggccatggga ggtatcctac ttatggtttt aggaattgct ctttatattc
     2761 cacaattcta tgcttattca caggtagaat atatcttgtt tgaacaattg gaacgcgaag
     2821 aatatacagg cgctttttca atcattcggt ctagtcgaaa gttgatgaaa ggttacaagt
     2881 ttaaacgctt tacacttgat ttatccttca ttggctggtt ccttcttgtc attattacat
     2941 ttggcctggc tggtttatat gtatggccgt atcactatgc tgcacaactg cacttccatg
     3001 aagaaatttt agatgatcag gctaagaaaa tgagttacgt ataaaaataa gagcgatatc
     3061 tgctcttatt tttatataca cttttatgtc tatatttaag aaaaaaatat agtagtaatt
     3121 ggtaaaaaca tttggattgt gttatactat gactgaggag cgacaaagaa ctattttagc
     3181 ctgcttggta ttggagcaga tttcttcctt tctatttttt acgccatgtg tagtaatttg
     3241 ttccaattct aagcgctcct ccttagagtc atccggcagt tcaatggttc attgaactgc
     3301 tttttcgat
//
LOCUS       DASFRC010000200         3304 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.200, whole genome shotgun sequence.
ACCESSION   DASFRC010000200 DASFRC010000000
VERSION     DASFRC010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3304)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3304)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3304
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.200"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            160..1236
                     /locus_tag="U1087_002069"
     CDS             160..1236
                     /locus_tag="U1087_002069"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HEM4756499.1"
                     /translation="MTEKTIVFKVGTSSLTQENGSLDRIKIARITNQLAQLHQKGYQI
                     VLVTSGSIAAGFRRLGFDKRPTKIAENQASAAVGQGLLIEEYTQNLMKDGIVSAQILL
                     TQDDFADARRYQNASQALQVLLKQRAIPIINENDTIAIEEIKVGDNDTLSAQVASLLK
                     ADLLVLLTDVDGLYTANPNSDPTAQHLPEIKEITEDLFAMAAGAGTSNGTGGMTTKLQ
                     AAQIATKSGVPVFICSSKEDTALLQAVTQANRGTLFLADGHAMNQRKQWMAFYARTDA
                     AVEVDAGAVDAMLHQGRSLLAAGVKALEGDFEVGQVVEVYSQADHRLIGKGRVKLSSR
                     DLQDQLANGRAEGVLIHRNDWVSL"
     gene            1246..2484
                     /locus_tag="U1087_002070"
     CDS             1246..2484
                     /locus_tag="U1087_002070"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HEM4756500.1"
                     /translation="MTTTQALLDSLLAHKASINLATTEQKNQALSAMADQLVAQTEAI
                     LAGNAIDMEHAQGKISQVMQDRLLLTAERIEAMADGIRALIGLPDPVGLTLEETTRAD
                     GLHIRKKSIPFGLVGMIYESRPNVTSDAAALAIKSGNAVILRGGKEAFHSAQAIVTAL
                     KAGLEEVGLSPKVIELVQDTSRVSATELMTAKGKIDLLVPRGGAGLIQAVVENATVPV
                     IETGTGICHVYVDKDADLDKALRIVVNAKTSRPSVCNAAEVLLVHEEIASQFLPRLEE
                     ALSGQVELRADSQAQALLNQATPAGDQDFDTEFLDYILAVKVVSNVEEAISHIAQHST
                     GHSEAIVTENSQTADRFTLHVDSAAVYVNASTRFTDGGEFGLGCELGISTQKMHARGP
                     MGLREMTTYKYIITGDGHIR"
     gene            2494..3279
                     /gene="proC"
                     /locus_tag="U1087_002071"
     CDS             2494..3279
                     /gene="proC"
                     /locus_tag="U1087_002071"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HEM4756501.1"
                     /translation="MKIGFIGLGNMGAALAQAVSQQPDTQLLLSNHNPAKAQALQAQL
                     GGQLFSNGEIAEQAEIIFLGVKPHLIQSILSGLQDQISQNPSAIWISMAAGVTLDSLA
                     EFVSADKLIRIMPNTPVAIGQGMTTYSLVNQELAPLLEQILEKSGKVQQVPESLIDAA
                     TAIAGCGPAFVYQMIEAMTDAGVQNGLTAQDAKVLAAQTLAGTAQMVLNSDKHPAQLR
                     QEVTSPGGSTIAGVVALEKEGFRYAIIKAVAAALKKTRKLGKK"
BASE COUNT          858 a          792 c          872 g          782 t
ORIGIN      
        1 gccgctgggc tttttgccca gcctctttgt ttccagcgtt ttttaatgct actcatgatt
       61 aggaatctat tccctctctc cttgccgaat aacagtgatt ttctttatga ttaaaatatg
      121 gtataatttt ccaaatatta gtttttgtga gaagagatta tgacagaaaa aacgattgta
      181 tttaaggtag ggaccagctc tctgacccaa gaaaatggca gtttggatcg aattaagatt
      241 gctcggatta ccaatcagtt ggctcagttg catcagaagg gctaccagat tgtgctggtg
      301 acgtcgggct cgattgctgc tggttttcgg agattgggat ttgacaagcg accgaccaag
      361 attgcggaga atcaggcttc tgcggctgtt ggtcagggct tgctgattga ggaatacacg
      421 cagaatttga tgaaagatgg cattgtgtct gctcagattt tgttgaccca ggatgatttt
      481 gcggatgcca gacgttatca gaatgcctct caagccttgc aggtcttgct caaacaacgt
      541 gctattccta ttatcaacga aaatgatacc attgccattg aagagattaa ggtaggggat
      601 aacgatactt tatctgctca ggtggcttct ctcttgaaag cagacctctt ggtgctcttg
      661 acggatgtgg atgggcttta tactgcaaat cccaacagcg atccgactgc ccagcatttg
      721 ccggaaatca aggaaattac ggaagatttg tttgccatgg cagcaggagc aggaacgtcc
      781 aacggaacag gtggcatgac caccaaattg caggcggcac agattgcgac caagtcaggc
      841 gtacctgtct ttatctgctc gtctaaggag gatacggccc ttttacaagc cgttacccaa
      901 gccaaccgtg gcaccctctt tttagctgac ggccacgcca tgaaccaacg caagcagtgg
      961 atggctttct acgctcggac agatgcagca gttgaggtgg atgctggtgc ggttgacgcc
     1021 atgctgcacc aaggccgcag tttgttagct gctggtgtca aagccctgga aggcgacttt
     1081 gaggtaggac aggtcgtgga agtttacagt caagcagacc accgtttgat tggtaaaggg
     1141 cgggtcaaac tctcgtcccg ggacttgcag gaccagctgg caaatggcag agcggaaggc
     1201 gtgttgattc accgcaacga ttgggttagc ctataggaga aagttatgac aacaacacaa
     1261 gcattattag acagtttatt ggcccacaag gcctctatca acctggcaac aaccgaacaa
     1321 aagaaccagg ccttgtcggc tatggcagac cagttggttg cccaaacaga ggcgatccta
     1381 gctggcaatg ctatcgatat ggaacatgcc caaggcaaga ttagccaagt catgcaagac
     1441 agattgctct tgactgctga gcgaattgaa gccatggcag atggtattcg tgccttgatt
     1501 ggcttgccag atccagttgg tttgaccttg gaagaaacca ctcgagcaga cggcttacat
     1561 attcgcaaga aatccattcc ctttggtttg gtggggatga tttacgaaag ccgtccaaat
     1621 gtgacttcag atgccgcagc cttggcgatc aagagcggaa atgcagttat cttgcgtggt
     1681 ggcaaggaag cctttcattc agctcaagct attgtcacag cccttaaagc tggtttggaa
     1741 gaggttgggc tatcacctaa ggtcatcgag ttagtccaag ataccagccg ggtctctgcg
     1801 accgagttga tgactgccaa aggaaagatt gacctcttgg tgccacgtgg tggtgcgggt
     1861 ctgattcaag ccgtcgttga aaatgcgact gtgccagtta tcgaaacagg cacaggtatc
     1921 tgccatgtct atgtggacaa ggatgcggac ttggacaagg ccttgcggat tgtggtcaat
     1981 gccaaaacca gtcgtccctc agtctgcaat gcggcggaag ttttgttggt ccatgaagaa
     2041 attgccagcc aattcctacc tcgcttggaa gaagctcttt ctggtcaggt ggaattacgt
     2101 gccgacagtc aggcccaggc tcttctcaac caagccacac cagcaggcga ccaagatttt
     2161 gacacggaat ttctggacta tatcttggct gtcaaggtcg tttcaaatgt agaagaggct
     2221 atcagtcata tcgctcaaca ctcgactgga cacagcgagg ccattgtgac ggaaaacagc
     2281 caaacggcag atcgtttcac actccatgta gattcggcgg cagtctatgt caatgcctcg
     2341 acccgcttca cagacggtgg cgagttcggt ctgggctgtg aattgggcat ttctacccag
     2401 aagatgcatg ctcgtggtcc aatgggcctg cgtgaaatga ccacttacaa gtacatcatc
     2461 acaggcgacg gccacattcg ttaggaggac aggatgaaga ttggatttat cggactgggc
     2521 aatatgggag cggctctggc ccaagcggtc agccagcagc cagataccca gctcctcctc
     2581 agcaaccaca acccggcaaa agcccaggct ctacaagctc agctgggcgg tcagcttttt
     2641 tctaatgggg aaatagcaga gcaggccgag attattttcc ttggggtcaa gcctcacctg
     2701 attcagtcaa tcttgtcagg cttacaggac cagatcagcc agaatccgtc agctatctgg
     2761 atttctatgg cagcgggagt gacccttgac agcctggcag aatttgtgtc ggcagacaag
     2821 ctcatccgca tcatgcccaa cacaccggtc gctatcggcc aaggcatgac aacctatagc
     2881 ttggtcaatc aagagctcgc tccgctattg gaacaaatcc tagaaaaatc aggcaaggtc
     2941 cagcaggtgc cagagagcct gatcgacgca gcaacggcta tcgcaggctg cggaccagcc
     3001 tttgtctatc agatgattga ggctatgaca gatgccggtg tgcaaaacgg gctcacagct
     3061 caagatgcca aggttctggc tgcacaaacc ttggctggaa ctgcccagat ggtcttgaat
     3121 agcgacaagc acccagctca gctgagacaa gaagtgacct cgccaggcgg ctcgactatc
     3181 gcaggcgtgg tagcccttga aaaagaaggc ttccgttacg ccattattaa ggcagtcgcc
     3241 gccgccctca aaaagactag aaaattaggc aaaaaataga agacagcaaa aaacgggact
     3301 ttta
//
LOCUS       DASFRC010000201         3247 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.201, whole genome shotgun sequence.
ACCESSION   DASFRC010000201 DASFRC010000000
VERSION     DASFRC010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3247)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3247)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3247
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.201"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..2870)
                     /locus_tag="U1087_002072"
     CDS             complement(<1..2870)
                     /locus_tag="U1087_002072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014635954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM4756502.1"
                     /translation="MRKYHFGAASVLLGVSLVLGAGTQVVKAEEAVTSSEPTIASSVA
                     PASTEAVAEEAEKTNAENVGAVATTSTEVEKAKAVLEQVTSESPLLAGLGQKELAKTE
                     DATLAKAIEDAQTKLAAAKAILADSEATVEQVEAQVAAVKAANEALGNELQKYTVDGL
                     LTAALDTVAPDTTASTLKVGDGEGTLLDRTTTATPSMADPNGATIAPHTLRDKVEATK
                     ESGWYTFESYDLNSYNRNQNGSIVGGTAVGAYMRYSLDSDPATSTVLAELVSTKDGEV
                     LESHKLEAGNSVTFSYPKTINAKNSNITLTYDTSTATADIPGSLKFYDDRDAVYSTVV
                     VPAYQVNTTRYVTEDGTVLATYSLQTIAGQTVTSSKVRTFTGYDYVKTTQNAIQGAYP
                     KGTLMLAGVGADKNGNKYYKAIREVVEDNQSVMTLYLLDPTYTGTVDWTGTDTTGFIP
                     LLKTSPTVYTIDRKVYDYNINATILSPYTVDNGFMVFKESATNAQGSKYRVVAQWSGT
                     DETDPTKPEYTGGKYGRIYIGTQVWTTAKELGITENQWRGTADKFDNNGFVPFGTQQY
                     LRNASVATAVETTHVYKVNPKFGDVIVEYYDTEGKQIVSSVVDTPKSALGTKYNTDED
                     RRPDRLVAADGTVYFYKEVKSGSASTTGAVVEGTTTVKYVYEKAGSVNVNFVDINGKV
                     IKAPVSDEKDAKPGYNYDTDLDQKIASITFEGKVYKLVPAGDYPVGKVGTGNNLIEVG
                     NNTAKGIDPTTGKIEAGVNKEVTYVYKAVTGSVVVNYKDTEGNVIKDPETDVSDAPVG
                     DAYTTTDKKPNEIITKDGSRYVLVPSKTDGEENGKVIEGTITVTYVYQKVANWIPEIP
                     NVPETNRPKVPYPFDPTEPDEPIDPTTPGTNGEVPNIPYVPGYTPVDPKDNTPLKPID
                     PNDPGKGYVPPTPENPGVDTPIPYVPVKKVVTNHVDEEGNPIA"
BASE COUNT          906 a          705 c          570 g         1066 t
ORIGIN      
        1 gcaataggat taccttcttc atcaacgtgg ttagttacga cttttttaac tggaacataa
       61 ggaattggtg tatcaacacc tggattttct ggtgttggtg gtacataacc cttacctgga
      121 tcatttggat caattggttt caacggcgtg ttatccttag gatcaaccgg tgtatatcct
      181 ggaacgtaag gaatatttgg aacctcgcca tttgttcctg gtgtcgttgg atcgattggc
      241 tcgtctggct ctgttgggtc aaatgggtaa ggtacttttg gacggtttgt ttctggtaca
      301 tttggaatct ctggaatcca gtttgcaact ttctggtaaa cataagttac tgtgattgtt
      361 ccttcgataa ctttaccatt ttcctcacca tctgtcttag atggaacaag gacatagcgt
      421 gatccatctt ttgtgatgat ttcgtttggt ttcttgtcag ttgtagtata agcatctcca
      481 accggtgcat cagacacatc cgtttctgga tctttaatca cattaccttc tgtatctttg
      541 tagtttacaa ctacagaacc tgtcactgct ttatacacat aggtaacttc tttgttaaca
      601 ccagcttcaa tcttgcctgt tgttgggtca atacctttcg cagtattatt accaacttca
      661 atcaagttat ttccagttcc aactttacca accggataat caccagcagg aacaagtttg
      721 tacaccttgc cttcaaaagt gatggaagct attttctgat ccaagtcggt atcataattg
      781 taaccaggtt tcgcatcttt ttcatctgaa acaggagctt tgattacttt accattgata
      841 tcaacgaagt taacattaac gctaccagct ttttcgtaaa catacttaac agttgtcgta
      901 ccttcgacta ccgcacctgt cgtactagct gaaccagatt tcacttcttt gtagaaatat
      961 actgtgccat cagcagcaac caatctatct ggtctacggt cctcgtcggt attatactta
     1021 gtaccaagag ctgacttagg agtatccaca actgaactta caatttgttt cccttcagta
     1081 tcgtagtact caacaatgac atcaccgaat ttaggattta ctttgtagac atgggttgtc
     1141 tctacagctg tagccactga agcgtttcgg agatattgtt gggtaccaaa tggaacaaaa
     1201 ccattattat caaacttatc cgctgtacct ctccattggt tttcggtaat tcccaattct
     1261 tttgcagttg tccaaacctg agtaccaata tagatacgtc catactttcc tccggtatac
     1321 tctggtttag ttgggtcagt ttcatctgtg cctgaccact gtgcaacgac acgatattta
     1381 ctaccttgag cattggtagc actttccttg aagaccatga aaccattatc aactgtgtaa
     1441 ggagataaaa tagttgcgtt gatattgtaa tcatatactt ttcgatcaat agtataaact
     1501 gttggagatg tctttagcag cggtatgaat cccgtcgtat cagtcccagt ccaatctacg
     1561 gtacccgtat aagttggatc caataagtac aatgtcataa cggattgatt atcttcaaca
     1621 acctcgcgaa tagctttata atatttatta ccatttttgt cagcaccgac accagctagc
     1681 ataagtgtgc ctttaggata agcaccttga atagcatttt gcgttgtttt cacatagtca
     1741 taaccagtaa aagtacgtac tttagatgaa gtaaccgtct gacctgcaat agtttgaaga
     1801 ctgtaagtcg ccaaaactgt gccatcttca gtaacatagc gagtcgtatt aacttgatat
     1861 gcaggcacta caactgtaga atatactgca tctctatcat cataaaattt caacgaacct
     1921 ggaatatcag cggtagctgt tgaagtatca taagtcaaag taatgttgct attcttcgca
     1981 ttaatcgtct tcggataact aaaagtcaca ctattcccag cctcaagttt atggctttct
     2041 aagacttctc catctttagt actcactagc tccgctagta cagttgatgt agctggatcc
     2101 gagtccagag aataacgcat gtaagcgccg acagcagttc caccaacaat tgaaccattc
     2161 tggttccgat tgtaggaatt taaatcatat gattcaaaag tataccaacc agattctttt
     2221 gtagcctcaa ctttatctcg aagtgtatga ggagcaatag tagcaccatt tggatcagcc
     2281 attgaaggtg ttgctgttgt cgttctatct agaagggtac cttcgccatc gccaactttc
     2341 aatgttgatg cagttgtatc aggtgctact gtatcaagtg ctgctgttaa gagaccatct
     2401 acagtgtatt tttgcaattc attccctagc gcctcgttgg ctgctttaac cgctgcgact
     2461 tgcgcttcaa cttgctcaac agttgcttct gagtcagcca aaattgcctt agctgctgca
     2521 agttttgttt gagcatcctc tatagctttt gcaagagttg catcttcagt tttagccaac
     2581 tctttttgac caagaccagc caaaagcggt gattctgatg ttacctgttc aagaacagct
     2641 ttcgcttttt caacttctgt cgaagtcgta gctacagcac ccacattttc agcatttgtt
     2701 ttttctgctt cttctgcaac cgcttctgtc gaagcaggcg ctacactact ggcaatagtt
     2761 ggttctgatg aagtaacagc ttcctcagct ttaacaacct gtgtaccggc acctaaaact
     2821 aacgacacac caagcaaaac acttgctgca ccaaaatgat acttacgaat cgaaaattgt
     2881 tgtttcgtgt gccgtaccag tcaaatgatt ttttatttgc tctacgcata aaaaatcccc
     2941 catataaata ttaatttaat tacacaaatt ttctactctt tgtatcaaag ccttgaaaac
     3001 tcccgcaatc atccgaggta ttatactaca aataacttta aatgccaagt aatattataa
     3061 aattcctcaa aaaaacatta tgaattcgct tcaattcgag aagaaaccag tatattcata
     3121 gttttttaca tattttttaa gaaatttcac ttttgagaat ttctataaaa ttaccgacac
     3181 cgcaaaaata ttagctccat atcttgtatt cttatacata tagccaataa taaatagtca
     3241 ataaatt
//
LOCUS       DASFRC010000202         3200 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.202, whole genome shotgun sequence.
ACCESSION   DASFRC010000202 DASFRC010000000
VERSION     DASFRC010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3200)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3200)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3200
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.202"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            180..1079
                     /locus_tag="U1087_002073"
     CDS             180..1079
                     /locus_tag="U1087_002073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEM4756503.1"
                     /translation="MDHKIIERKSLTVSSVMNGLSGLAGIAVYIMTDLNALLLDGAFS
                     LIAFISSLVAVYISKNSHRKTETFPQGLYFLEPLYAIMKSLATLLLLVFAVLETSATA
                     FAYFVHGIGHQMTTGPVLPYTITMFFVCMGLYLYNRHMSTKVNHLSTIILAEAKGNLV
                     DGLISGAIGIAILLLYLVPINSWFGFLHYTGDFFLTLALAIISFKEPWNLLVASFKEL
                     ANGTIHFPEIHDSIYQLLEPYLKEDSNDVEIHIFKQGMKIRVKINLHNIHHEIIQKLL
                     EDKPQMLYLLKKHHEYISIEYAL"
     gene            complement(1096..1449)
                     /locus_tag="U1087_002074"
     CDS             complement(1096..1449)
                     /locus_tag="U1087_002074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase family protein"
                     /protein_id="HEM4756504.1"
                     /translation="MILFYEYPKCSTCRAAKAELKSLGLEFEAIDIKSTPPSAEELKA
                     WMEATGLELKKYFNTSGNSYRELGLKDKFDSLSLEQALNLLANDGMLIKRPLLIQDGK
                     ILQIGYRTKYENLGL"
     gene            complement(1433..1939)
                     /locus_tag="U1087_002075"
     CDS             complement(1433..1939)
                     /locus_tag="U1087_002075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEM4756505.1"
                     /translation="MLYKQVYHSPLGPMSLIASDKGLRGAWFEGQKYFERGLNEKAIL
                     ASHPILDQTVRLLDQYFSGVQVDFSNLPLEAVGTNFQEHVWQLLKMIPIGQTTTYGQL
                     AQQLGLRSGQAVGGAVGRNPYSIIVPCHRVLNQKGQLTGYAGGLDKKIWLLRHENPEF
                     EVKDDFIL"
     gene            complement(1942..3123)
                     /locus_tag="U1087_002076"
     CDS             complement(1942..3123)
                     /locus_tag="U1087_002076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HEM4756506.1"
                     /translation="MVFSVRTFNNINQIGLKELGNKFQIDGDHAANPDAFIIRSENLH
                     GFDFPENLKAIARAGAGTNNIPIEEATEKGIVVFNTPGANANAVKEAVIASILLSARD
                     YIGATAWANTLSGDDVPKQVEAGKKQFAGTEISGKTLGVIGLGAIGARIANDARRLGM
                     NVLGYDPYVSVETAWTISSHVKRVDDLKEIFTNADYITVHVPLTDKTRGLFNADSFGQ
                     MRKGTTLINFARGELVDNADLFEAIEAGVIKNYITDFGTEEVLNKDNIIVFPHVGGST
                     EEAELNCAIAAGQTIRRFMETGEIINSVNFPNVKQFLDAPYRITLINKNIPNMVATIT
                     TAVSELGINIDNIINKSKGDYAYTLLDLDEADKVKIEQLVAKFEATDAIVKVRVIQNK
                     N"
BASE COUNT          932 a          733 c          546 g          989 t
ORIGIN      
        1 tgatttcaat tatcagataa cagatattaa aggcttaaaa cccgtaggtc tattgcaagg
       61 gttttgagcc tttatttctt atcactctac ctctctacct tgttttaatc cgctcaattt
      121 gaaaacggtg tcattttgtg gtaaaataaa tatatagata tacattaaaa ggagggatta
      181 tggaccacaa aattatcgaa cgcaaatctc taactgtttc ctctgttatg aacggtttat
      241 ctggactagc aggtattgcc gtttatatca tgactgacct aaacgccctc ctcctagacg
      301 gagccttttc tctaatagca tttatttcgt ccttagttgc agtttacata tcaaaaaata
      361 gccatcggaa aaccgagact tttcctcaag gactgtattt tctagaacct ctctacgcta
      421 tcatgaaatc tctcgcaact ctactactcc ttgtatttgc tgtacttgaa actagcgcga
      481 cagcctttgc ttactttgtt catggaatcg gtcatcaaat gactacaggt cccgttctcc
      541 cttataccat aaccatgttt tttgtctgta tggggcttta cctatacaac cgccatatga
      601 gtaccaaagt caatcatctg tctactatca tattagcaga agcaaaaggc aaccttgtag
      661 acggactcat ttcaggtgca attggaattg caattcttct gctctatctt gttcctatca
      721 actcttggtt cggcttcctg cattatactg gtgacttctt tttgacacta gcactagcaa
      781 tcatttcatt taaggaacct tggaacttat tagtggcatc tttcaaggaa cttgccaacg
      841 gaacaatcca tttccctgag atacatgatt ctatctatca gctattggag ccttacttaa
      901 aggaagatag caatgatgtc gaaatccata ttttcaaaca aggcatgaag attcgcgtta
      961 aaatcaatct ccacaatatc catcacgaaa ttatccaaaa actcttagaa gataagcctc
     1021 agatgctcta tcttttgaaa aaacatcatg aatatatttc aatagaatat gcgctataat
     1081 aaacaaaatc tcggcttata aaccgagatt ttcgtatttt gttcgatagc caatctgtaa
     1141 gattttacca tcctgaatta gtaggggacg cttaatcagc ataccatcat tagctagaag
     1201 attaagtgcc tgctccaagc taagactatc aaacttatct ttcaaaccta gttcacgata
     1261 gctattccca gaagtattaa aatacttttt caattctagt cctgtcgcct ccatccaagc
     1321 ttttagctct tcagcactag gcggtgttga cttaatgtca atagcttcaa attccaatcc
     1381 caaactcttc agctccgcct ttgctgctcg gcaagtcgaa cattttggat actcataaaa
     1441 taaaatcatc tttcacctca aattctggat tctcatgtcg caagagccag attttcttat
     1501 ccagtccacc tgcataacct gtcaactgtc ctttctgatt gagaactcgg tgacaaggaa
     1561 caataatcga ataaggatta cgcccaactg ctcctcctac tgcctgacca gaacgaaggc
     1621 ccagttgctg agccagttgt ccataggtag tcgtctgacc aatcggaatc atcttcaata
     1681 attgccagac atgctcttgg aaatttgttc ccacagcttc taatggaagg tttgaaaagt
     1741 ccacctgaac ccctgaaaaa tactggtcaa gcaatcgaac tgtctggtct aaaatgggat
     1801 gggaggctaa aatagctttc tcattcaagc ctcgttcaaa atatttttgt ccctcaaacc
     1861 aggcccctct caatccctta tcactagcaa ttaatgacat ggggccaagt ggactgtgat
     1921 agacttgttt atacagcatg attagttttt attctgaatg acacgcactt tgacaattgc
     1981 atccgttgct tcaaatttag caaccaactg ctcaattttc actttatccg cttcatccaa
     2041 atcaagtaaa gtataggcat agtcaccttt agacttattg atgatattat cgatattgat
     2101 tcccaactca gatacagccg ttgtgatcgt tgccaccata ttaggaatat tcttattaat
     2161 caaggtaata cgatacggtg catctaggaa ttgtttcaca tttgggaagt taactgagtt
     2221 gataatttca cccgtctcca taaaacgacg aatggtctga ccagcagcaa tggcacagtt
     2281 gagctctgct tcctctgttg acccaccaac gtgcgggaag acgataatgt tgtccttgtt
     2341 gagcacttct tctgtcccaa aatccgtgat atagttcttg ataactcctg cctcaattgc
     2401 ttcaaacaaa tcagcattat caaccaattc acctcgggca aagtttatca aggttgttcc
     2461 ttttctcatt tgaccaaagc tatccgcatt gaagagtcct cgtgtcttat ctgtcaaagg
     2521 aacatgaaca gtaatgtaat ccgcattggt aaagatttct ttcaagtcat ccacacgttt
     2581 gacatggctt gaaatggtcc atgcagtttc tactgataca taagggtcgt aaccgagaac
     2641 attcatcccc aaacggcggg catcgttggc aatacgcgca ccgatagcac caagtccgat
     2701 aacaccaaga gtcttacctg aaatttctgt cccagcaaac tgcttcttac ctgcttcaac
     2761 ctgcttaggt acatcatctc ctgacaatgt atttgcccat gcagtcgctc cgatatagtc
     2821 acgtgctgac aaaagaatgg aagcaatgac tgcctctttt acggcattgg cattggcacc
     2881 tggagtgtta aagacaacaa tacctttctc tgttgcctct tcgattggaa tattgttagt
     2941 ccctgcacca gcacgggcaa tagcttttag attttcagga aaatcaaatc catgcaaatt
     3001 ttcagatcga ataataaagg catctggatt tgctgcatga tctccgtcaa tctggaattt
     3061 attgcctaat tccttaagac caatttgatt gatattgtta aaagtacgta cgctaaatac
     3121 catttatttt tacctaaaaa ggggagtggg aaagaactca accactccta gaagagttcg
     3181 tcaacaagtc tttatttcta
//
LOCUS       DASFRC010000203         3185 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.203, whole genome shotgun sequence.
ACCESSION   DASFRC010000203 DASFRC010000000
VERSION     DASFRC010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3185)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3185)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3185
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.203"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(219..884)
                     /locus_tag="U1087_002077"
     CDS             complement(219..884)
                     /locus_tag="U1087_002077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM4756507.1"
                     /translation="MLETFSQRLEWICRKIWILLQAFLLLLLELIPTFILQKSTSPVA
                     QWTAGLSSIGIMVFMCWLAERKGLAIWDRKFLTWKGLGLVALTVLFTSLSTVLGHTIM
                     DLQGIEDTANQIGIDKLLRMIPFGLAFVRIACQAAISEEIIVRGYLFKKFFEKHKILG
                     IVVSGLVFAFLHGPTDLGSWIIYASPGFILAYLYYKTDYLIYPIAVHFINNAWAVVAF
                     YYL"
     gene            complement(895..1356)
                     /locus_tag="U1087_002078"
     CDS             complement(895..1356)
                     /locus_tag="U1087_002078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM4756508.1"
                     /translation="MLVKADLSNAEELLPIQHRAFAAVYETYQNQYNPAIEIMDYFQS
                     RFARPNCTYYKIVEEGHTVGLVRTTVAEDADQGWLGLIGIDPDHRGKSYGHKTMLELE
                     QLYPTVKRWVLCTVLQEAKLVTFYESLGYKAIKTDPEQEGIDMVYMEKWIG"
     gene            complement(1421..2194)
                     /locus_tag="U1087_002079"
     CDS             complement(1421..2194)
                     /locus_tag="U1087_002079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HEM4756509.1"
                     /translation="MTSDVARMIRLARDQARLTTLDYATQLFDDFMELHGDRNFRDDG
                     AVVGGIGFLAGQPVTVIGIQKGKNLQDNLKRNFGQPHPEGYRKALRLMKQAEKFGRPV
                     VTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVAD
                     QVWMLENSMYAVLSPEGFASILWKDGSRAMEAAELMKITSYELENLQVVDRVVLENGR
                     ATKEVLADIKENLVSQFAQLQALPLDELLEKRYQRFRKY"
     gene            complement(2191..3057)
                     /locus_tag="U1087_002080"
     CDS             complement(2191..3057)
                     /locus_tag="U1087_002080"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HEM4756510.1"
                     /translation="MALFRKKDKYIRINPNRSRIESAPQAKPEVPDELFSKCPACKVI
                     LYKNDLGPEKTCQHCSYNFRITAQERLALTVDEGSFKELFTGIETTNPLDFPNYLEKL
                     AATRQKTGLDEAVLTGKATIGGQPVALGIMDSHFIMASMGTVVGEKITRLFELAIEER
                     LPVVLFTASGGARMQEGIMSLMQMAKISAAVKRHSNAGLFYLTVLTDPTTGGVTASFA
                     MEGDIILAEPQTLVGFAGRRVIESTVRENLPDDFQKAEFLQEHGFVDAIVKRQDLPAT
                     ISRLLRMHGGVR"
BASE COUNT          897 a          769 c          653 g          866 t
ORIGIN      
        1 tgatacataa tcaaaggatt atgtaattag cttttgtaat atacttataa tacaacgata
       61 caggatattt gtcaatagaa accaataaaa aatactaagt attcctagta ttttctaaag
      121 cgttgattaa ttatccaata ggaaaatctg atagttccta acaaggttag ttaagagggc
      181 attcttccag ctttcaagag ctatatttta ttgcagtttt ataaatagta gaaagccacc
      241 accgcccaag cattatttat gaaatgaact gctattgggt aaatcagata atctgtctta
      301 tagtacaagt aagccaagat aaaacctgga ctagcataaa taatccaaga gcccaaatct
      361 gttggtccat gcagaaaagc aaataccaaa ccagacacca caattcccaa aatcttgtgc
      421 ttttcaaaaa actttttgaa tagatagcct ctgacaatga tctcctctga aatagctgcc
      481 tgacaggcaa ttctaacaaa ggctaaccca aagggaatca ttcgcaacag cttgtcaata
      541 ccaatctgat tagccgtatc ttcaatccct tgaaggtcca tgatagtatg ccctaagaca
      601 gtagaaaggc tggtaaatag tacggtcagt gcaaccaatc caagtccctt ccaggtcagg
      661 aattttctat cccaaatggc aagccctttc ctttctgcca accaacacat aaagaccatt
      721 attccaatag aagataggcc ggcagtccat tgagcgactg gcgaggtgga tttttgcaat
      781 atgaaagttg gaatgagttc aagaagcaac aatagaaagg cctgcagtaa aatccagatt
      841 ttcctacaaa tccattccaa tcgttgactg aatgtttcta gcatttctaa cctcctatcc
      901 tatccacttc tccatataga ccatatctat accctcctgc tcaggatcgg ttttaatggc
      961 cttgtagcct agactctcat agaaagtaac taactttgct tcctgtaaga ccgtgcagag
     1021 cacccacctc ttaaccgttg gataaagttg ttctaactct aacatagtct tgtgaccata
     1081 gctttttcct ctgtggtctg gatcaatgcc aatcaagcct agccagccct ggtcagcatc
     1141 ttcagcgacc gttgttcgca ctaaaccgac tgtgtgccct tcctcaacaa tcttgtagta
     1201 ggtgcaattt ggtcgtgcaa agcgtgattg gaaatagtcc ataatttcaa tggcaggatt
     1261 atactggttc tgataggttt catacacagc tgcaaatgct cggtgctgaa taggtagcaa
     1321 ttcttctgcg tttgatagat ctgcttttac taacatggaa aacctcctag aaactatttt
     1381 atttattata tcaaatatca caaaaaaata ctaggtcttc ctagtatttt ctgaatcgtt
     1441 gatagcgttt ttcgagtagc tcatcaagtg gcaaggcttg taactgagca aactggctga
     1501 ctaggttttc cttgatgtca gccaagactt ccttagtcgc tctgccattt tccaaaacaa
     1561 cccgatcgac cacttggagg ttctccaact cgtaagaggt aatcttcatg agttctgccg
     1621 cttccatggc ccgactgccg tctttccaga ggatagaggc gaacccttcg gggctgagga
     1681 cggcgtacat ggagttttcc agcatccaga cctggtctgc gactgccagg gcaagtgctc
     1741 caccagagcc gccctcgccg atgataatag cgataatggg caccttgagg tcgctcatct
     1801 ccatgaggtt gcgggcaatg gcctcaccct gtccacgctc ctcggcaccg acaccgggat
     1861 aagctccagc agtattgata aaggtgacaa cgggacggcc gaacttctcc gcctgtttca
     1921 taagacgaag agccttgcgg tagccttctg ggtggggctg accgaagtta cgcttgagat
     1981 tatcctggag gttcttaccc ttttggatac cgataactgt cacaggctga cctgctaaaa
     2041 agccaatccc accgacaacc gctccatcat cacggaaatt ccgatcaccg tgcaattcca
     2101 taaagtcatc aaagagttgt gtggcatagt ccaaggtggt caggcgagcc tggtcacgtg
     2161 ccaaacggat catacgtgct acatcactgg tcatctgaca cctccatgca ttctcaacaa
     2221 gcgactaatg gtcgctggca agtcctgacg tttgacaatg gcatcgacaa agccgtgttc
     2281 ttgtaaaaat tcagccttct ggaaatcatc tggcagattt tcacgcacag ttgactcaat
     2341 aacccgtcgt cctgcaaaac caaccaaggt ctgcggttca gccaggataa tatcaccttc
     2401 catagcaaaa ctagccgtca cacctcctgt tgtggggtct gtcaagaccg tcaggtaaaa
     2461 gaggccagcg ttagaatggc gttttacagc tgccgaaatc ttagccattt gcatcaggct
     2521 catgatgcct tcctgcatgc gagcaccacc ggatgcggta aagaggacaa ctggcaaacg
     2581 ctcttcaatc gccaactcaa agaggcgggt aattttctca ccaactaccg ttcccataga
     2641 ggccatgata aaatgcgaat ccatgattcc aagggcaact ggttgtccgc cgatggtcgc
     2701 cttacctgtc aaaacagcct catccaagcc cgttttttga cgggtggctg ccagtttttc
     2761 gagataattt ggaaagtcca gcggattagt ggtttcaatc cctgtaaaca attccttaaa
     2821 cgagccttca tcaactgtca aagccaaacg ttcctgggct gtaatccgaa aattatagga
     2881 acagtgttga caggttttct ctggtcccaa atcattcttg taaaggatga ccttacaagc
     2941 aggacatttg gaaaagagtt catctggcac ctctggcttt gcttgaggtg ctgactctat
     3001 ccgcgaacga ttgggattga tgcggatata tttgtccttt ttgcgaaaca aagccatagc
     3061 attctcctag tttacttttt ttatcgtcat ttagttgact tttattactt cgacgaatga
     3121 gggagtggga aagaactcga ccattcatag aagagttcgt cttcccaccc ccgcacagtt
     3181 gatta
//
LOCUS       DASFRC010000204         3165 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.204, whole genome shotgun sequence.
ACCESSION   DASFRC010000204 DASFRC010000000
VERSION     DASFRC010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3165)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3165)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3165
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.204"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(65..1453)
                     /locus_tag="U1087_002081"
     CDS             complement(65..1453)
                     /locus_tag="U1087_002081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEM4756511.1"
                     /translation="MGIARKNFIIVAAMISFISVTLLGLLYYAMPIYYNQVKKQELRH
                     DYMTVAKQLDGMPEAKIISEIDDFDIKTPNIIISLFSSDRKIIYPDPNDEMAKKHENE
                     YLENGDFDEIGSWGAEITSAEGVTYYLLFNYGFHSLSDVSQTLVTFYPFILLLIIVLA
                     VSVAFVYSRLSTRRIARISETTRRMQSLESGISCAVAGTDEITILAQDINSLYSKLLS
                     SIDELRTENERAMAREKEKSDFLRITSHELKTPIASMLGLVEGMIYNVGPFKDHDTYL
                     KKCKEILQEQSELVHSILEATNLDMALKESREQIRLDQLIDSSLTSYQSLAEVKGYQF
                     EVELSPVLIEANPVYFLKAIKNILDNAFRYSCKEAIIRVVLRQNQLIIENQVERVLSD
                     EELDQVFRPFYRPDYSRDKKDGGIGIGLFIIQKILEKHGFPYTFYASDTQTMRFMIHL
                     QSQSTANSNELI"
     gene            complement(1455..2105)
                     /locus_tag="U1087_002082"
     CDS             complement(1455..2105)
                     /locus_tag="U1087_002082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM4756512.1"
                     /translation="MSRILVVEDDIVISQVVCEFLKEHGYQVESVFDGKVALERFQEE
                     QFDLIVLDIMIPSMTGLEVLKEIRKTSQIPILMLTAMGDEYTQLISFNQIISDYVVKP
                     FSPTILVKRIENILRGKGETDSIEIGTILIQPTSGAVYMEEEEVQLTKKEYEVLLYLA
                     KRRGKIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLPLKTIVGRGYQIEGT"
     gene            2337..3038
                     /locus_tag="U1087_002083"
     CDS             2337..3038
                     /locus_tag="U1087_002083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM4756513.1"
                     /translation="MWSPKKLTVLKWFDILILTIILFGDGIINSTLQYIALQNQTTTL
                     QENLTFSTMDNYKALALQLVWLTIAIFYLLLRNFDFSIWKKHIFITPWVPLQAVALFI
                     FSALCLDIYNLVSYQFLASNTPSMFQLFPNIDLPLILYSLLNGFYEEIFFLNLCLLVN
                     PKYAKWAFLYSLIIRCSFHTYQGLISALGLGLILGTIFYLLYQKIKPKNLLPFFLAHA
                     AADIIGLTVLSYILY"
BASE COUNT         1021 a          639 c          422 g         1083 t
ORIGIN      
        1 ggaaacggag tttcctctta cgtcgaagta ataaaagaaa aactaaatat tgtctatatt
       61 ttacctatat caattcatta ctattcgctg tactttgtga ttgcaaatga atcataaaac
      121 gcatagtttg tgtatcagaa gcataaaaag tgtacggaaa gccgtgtttt tctaatattt
      181 tctgtataat aaacaaacca atccctatgc caccatcttt cttatcacga ctgtagtctg
      241 gacgatagaa tggacgaaag acttgatcca attcctcgtc acttaaaaca cgttcaacct
      301 gattttcgat tattaattga ttttggcgta gtactacacg aataatagcc tctttacatg
      361 agtaccgaaa ggcattatct aaaatattct taatagcttt taagaaataa acaggatttg
      421 cctcaatgag aaccggtgat agttctactt caaattgata gcccttaacc tctgccaaac
      481 tctgataact tgttaaagag gaatcaatca actgatctaa tcggatttgt tctctgcttt
      541 cctttaaagc catatcaaga tttgtcgctt ctaaaataga atgaactaac tcagattgtt
      601 cctgcaagat ttccttgcat ttttttaaat atgtatcatg gtccttaaat ggccccacat
      661 tataaatcat gccttcgact aaccccaaca tactagctat tggagttttt aattcgtgtg
      721 atgtgatacg gaggaaatca gacttctcct tctcacgtgc catagcacgt tcattttccg
      781 ttcttaattc atcgatactt gacaataact tgctatacag gctgttaata tcctgagcca
      841 atattgttat ttcatcagtt cctgcaacag cacaactgat tccagactct aacgattgca
      901 ttcgtcttgt tgtttctgaa attcttgcta ttctacgagt ggacagtcta ctgtaaacaa
      961 aagctaccga aactgccaga acaataatca acagcaatat gaatggataa aaagttacca
     1021 atgtttgact gacatcagat aacgagtgaa atccataatt aaataacaga taatatgtaa
     1081 ctccttctgc agatgttatc tcggctcccc aagaaccaat ttcatcaaaa tccccatttt
     1141 ctaaatactc gttctcatgc tttttagcca tttcatcatt ggggtctgga taaataattt
     1201 ttctatcact cgaaaaaaga ctaataataa tattcggagt ttttatgtcg aaatcatcaa
     1261 tctcagatat aatcttagct tctggcatcc catccaattg tttagccaca gtcatataat
     1321 cgtgtctcaa ttcctgtttc ttaacctgat tataatatat aggcatagca taatacaata
     1381 accctaacaa tgttacagag atgaaagaaa tcatcgcagc aacaataata aaattttttc
     1441 tggcaatccc catattaagt accctctatt tgataaccac gaccaactat tgtcttcaaa
     1501 ggaagtgacg gcaatttctt acggatattc ttgatatgat tatctaagac acgactatcc
     1561 aattccgtat atccccatat tcccatcatc aagttatcac gactaacaat tttcccacgt
     1621 cgtttagcta aatatagtaa aacttcatat tcttttttcg tcaattgaac ttcttcttct
     1681 tccatataaa ctgccccgct agttggttga ataagaattg ttcctatctc aatgctatct
     1741 gtctctcctt ttcctctcaa aatattctca atccgtttta ccaatatagt tggtgaaaat
     1801 ggtttaacaa cataatcact tataatctga ttaaaactaa taagctgtgt atattcgtca
     1861 cccatggctg tcagcatcaa aattggaatc tgagaagttt tgcgaatttc cttcagtact
     1921 tccaaacctg tcatagatgg aatcatgata tctaaaacaa ttaaatcgaa ttgttcttct
     1981 tgaaaccttt ctaaagcaac ctttccatca aaaacagatt ctacctgata accatgttct
     2041 tttaaaaact cacaaacaac ttgactaata actatgtcat cctctacaac caaaatcctt
     2101 gacattttta tacctcctcg taaagttcta ttataaaata ttattatact tcaattatat
     2161 accgattcgt acaatggtgc aactctatca tagataaata gagcaccatg ttctgctatt
     2221 tcagctttct tttgacttct tttgtttaaa acagataaaa aacagacgaa accgagagca
     2281 tatgtagatt tgtttgataa actgaactaa acaaaaatga aaggaactat cccattatgt
     2341 ggagtccaaa aaaattaacc gtattaaaat ggtttgatat tctcattcta acaattattt
     2401 tatttggaga tggaatcatc aactctactc tccaatacat agccttacaa aatcaaacta
     2461 caactcttca agaaaatttg acattttcaa caatggataa ttataaggct ttggctctac
     2521 agttagtttg gctcacaata gccatcttct atctattact ccgaaatttt gatttctcaa
     2581 tttggaaaaa acatattttt attactcctt gggttccatt acaagctgtt gccttattca
     2641 ttttttctgc attatgcttg gatatctata atctagtatc ctatcagttt ctagcttcca
     2701 acactccatc catgtttcaa ctatttccta acattgattt accactgatc ttgtactcat
     2761 tgttgaacgg attttatgaa gaaattttct tccttaactt gtgcttactg gttaacccta
     2821 aatatgcaaa atgggcattt ttatattcgt taattattcg atgtagtttc catacctatc
     2881 aaggtttaat tagtgcactc ggtttaggct taattctagg aactattttc tatctacttt
     2941 atcaaaaaat aaaacctaaa aatttattac catttttcct agcacatgct gcagctgata
     3001 ttatcggttt aactgttcta tcatatattc tatactagtt atctaacaga taatttgaac
     3061 acaagctatc ctcatatcac caaagactga gtggacccct actagtcatg accacccgtg
     3121 aaaacgggtg gtttattttg tgtaatttag agaaaagagt gccaa
//
LOCUS       DASFRC010000205         3108 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.205, whole genome shotgun sequence.
ACCESSION   DASFRC010000205 DASFRC010000000
VERSION     DASFRC010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3108)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3108)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3108
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.205"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(144..932)
                     /gene="yghU"
                     /locus_tag="U1087_002084"
     CDS             complement(144..932)
                     /gene="yghU"
                     /locus_tag="U1087_002084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-dependent disulfide-bond
                     oxidoreductase"
                     /protein_id="HEM4756514.1"
                     /translation="MTEYTKPLVWKWEDENDNRSGNRPTAGSRFEQDLPKGEKSFQVY
                     SLGTPNGIKVAIMLEELKELGISEADYDLFLINIGQGDQFGSDFVAINPNSKIPAMVD
                     YSEQEPISVFESANILLYLAEKFDAFLPKTWAERTEVLNWLFWQTGAAPFVGGGFGHF
                     FHYAPTAQEYPINRYTMETKRQLDLLDQLLATREYVAGNTYTIADIAIWSWYGRLVQG
                     ELYPGSAEFLDVDSYKHLKTWVEKIAQRPAVQRGLTVKYHSIDN"
     gene            complement(941..1231)
                     /locus_tag="U1087_002085"
     CDS             complement(941..1231)
                     /locus_tag="U1087_002085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756515.1"
                     /translation="MKVAEKEELYKYLSAAYNLPQEAFSEALREKILEVAGQLDKEEN
                     LYILAGHLSRFINAELTALTCRAPKELVQLAHYLQEVQNHYRYASLFPGKVK"
     gene            complement(1336..2025)
                     /gene="rplA"
                     /locus_tag="U1087_002086"
     CDS             complement(1336..2025)
                     /gene="rplA"
                     /locus_tag="U1087_002086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HEM4756516.1"
                     /translation="MAKKSKNLRAALEKIDSTKLYSVEEAVALAKETNFAKFDASVEV
                     AYNLNIDVRKADQQIRGAMVLPNGTGKTSRVLVFARGAKAEEAKAAGADFVGEDDLVA
                     KINGGWLDFDVVIATPDMMAVVGRLGRVLGPRNLMPNPKTGTVTMDVAKAVEESKGGK
                     ITYRADKAGIVQALIGKVSFDADKLVENFKAFHDVMAKAKPATAKGTYMTSVSITTTQ
                     GVGIKVDPNSL"
     gene            complement(2066..2491)
                     /gene="rplK"
                     /locus_tag="U1087_002087"
     CDS             complement(2066..2491)
                     /gene="rplK"
                     /locus_tag="U1087_002087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004226069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HEM4756517.1"
                     /translation="MAKKVEKLVKLQIPAGKATPAPPVGPALGQAGINIMGFTKEFNA
                     RTADQAGMIIPVVISVYEDKSFTFITKTPPAAVLLKKAAGVEKGSGTPNKTKVATVTR
                     AQVQEIAETKMPDLNAASLEAAMRMIEGTARSMGFTVTD"
     gene            2646..3014
                     /locus_tag="U1087_002088"
     CDS             2646..3014
                     /locus_tag="U1087_002088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3397 domain-containing protein"
                     /protein_id="HEM4756518.1"
                     /translation="MFESIIFLKIVAFLFIFLTLAISIIAVKFFRLQNRGWNFADIAF
                     PLYAIEFYLISDKAYYNSLLPQLVLALSLLAIGLCGFFLLKKKNFLYRRFFKVFWRAS
                     FILTFLMYLALVIAVFTLKS"
BASE COUNT          846 a          646 c          586 g         1030 t
ORIGIN      
        1 cgtcgcctag tctaattctg attttcattg agtatcaatt attaatttct atttttggat
       61 tttcacaaag tctaactctt tcattataaa cttttatcat accaaagtaa aagaaaaacc
      121 cacccataag gtgggcaagt caattaatta tcaattgaat gatatttcac tgtcaaccct
      181 cgttgtacag ctgggcgctg agctattttc tctacccagg tctttagatg cttgtaagaa
      241 tcaacatcta aaaattctgc cgaacctgga tatagttctc cttgcaccaa gcgaccatac
      301 caagaccaaa tagcgatatc agcaatagta taagtgttac ctgctacata ttctctagtc
      361 gctaataact gatccaagag atccagctga cgcttagttt ccattgtata gcgattaatc
      421 ggatattctt gcgctgtcgg agcgtaatgg aagaaatgtc caaatcctcc accaacaaat
      481 ggagcggcgc cagtttgcca gaagagccaa ttaagaacct ctgtccgctc tgcccaagtt
      541 tttggtaaaa aggcgtcaaa cttttctgcc aggtaaagta gaatattggc tgattcaaag
      601 accgaaatcg gttcttgctc ggaataatct accatagctg gtattttgga gttggggttg
      661 atggcaacaa aatcggagcc aaattggtct ccttgaccga tattgatgag aaagaggtca
      721 taatcagctt ccgaaatacc taactctttc aactcctcca acataatagc aaccttaatg
      781 ccattcggcg ttcctaatga atagacttgg aaagacttct ctccctttgg taggtcttgc
      841 tcaaagcgac tgcctgctgt tggacggttg ccagatcggt tgtcattttc atcttcccac
      901 ttccaaacga gtggttttgt atattctgtc atgttttctc ctattttacc tttcctggaa
      961 aaagactagc atagcgataa tggttttgaa cctcttgaag gtaatgggct agttgcacca
     1021 attccttagg cgctcgacaa gtcagagctg ttaactctgc attgataaag cgacttaagt
     1081 gtcctgccag tatatagaga ttttcctcct tgtccagctg acctgctacc tccaatattt
     1141 tttcacgcag ggcttctgaa aatgcttcct gcggaaggtt gtaggctgca gaaaggtatt
     1201 tataaagctc ttctttctct gctactttca tcggataact ccttttatgt aaattgaata
     1261 tagtataaat cgaaattaag tgcttgtcaa gaaaatctca aaaaaaagat tgccctaaga
     1321 caatctttct attaattaaa gtgagttagg atcaactttg ataccaacac cttgtgttgt
     1381 tgtaattgat actgaagtca tgtaagtacc tttagctgta gctggtttag ctttagccat
     1441 tacatcgtgg aaagctttga agttttcaac gagtttgtca gcgtcaaatg atactttacc
     1501 gataagagct tgtacaatac ctgctttgtc agcacggtaa gtgattttac cacctttaga
     1561 ctcttcaact gctttagcaa catccattgt tactgtacca gttttagggt ttggcatcaa
     1621 gttacgtgga ccaagtacac gaccaagacg tccaacaaca gccatcatat ctggagttgc
     1681 gataacaacg tcgaagtcca accaaccacc gttgatttta gcaacgaggt catcttcacc
     1741 aacaaagtct gcaccagcag cttttgcttc ttctgcttta gcaccacgtg cgaaaacaag
     1801 aacgcgtgaa gttttaccag taccgtttgg caataccatt gcaccacgga tttgttggtc
     1861 tgctttacgt acgtcgatgt tcaagttgta agcaacttca actgacgcat caaatttagc
     1921 gaagttagtt tcttttgcaa gagcaacagc ttcttctacg ctgtaaagtt ttgtgctgtc
     1981 gattttttca agagcagcac gcaagttttt gcttttttta gccatgttat atgtctcctt
     2041 gtaatcagat aatcttgggt gctacttagt cagtaacagt gaatcccata gaacgagcag
     2101 taccttcgat catacgcatt gcagcttcaa gagatgcagc gttcaagtca ggcattttag
     2161 tttcagcaat ttcttgtact tgtgcacgag taactgttgc aactttagtt ttgtttggtg
     2221 tacctgaacc tttttcaaca cctgcagctt ttttcaaaag aacagcagct ggtggtgttt
     2281 tagtgatgaa agtgaatgat ttatcttcat acacagagat aactactggg atgatcatac
     2341 cagcttggtc agctgtacga gcgttaaact cttttgtgaa tcccatgatg ttgatacctg
     2401 cttgaccaag tgctggtccg actggtggag ctggagtagc tttacctgca ggaatttgaa
     2461 gttttacgag tttttcgact tttttagcca tgatataaaa tcctcctatt gtggttttgg
     2521 cggtaattaa agatttttac ctcccacaaa tatgtgtttt acacatacct tttcattata
     2581 cacgaatttc aaagaaatgc aagctttagg tttacttttt ttcacatttt ttatagaatg
     2641 aatgtatgtt tgaatcgatt atatttttaa aaatagtagc cttcctattt atctttctaa
     2701 ccttggccat ttcgataatt gctgtcaagt tttttaggtt gcaaaaccga ggatggaact
     2761 ttgcagacat tgcctttcct ctctatgcaa ttgaatttta tctgatttcg gacaaggcct
     2821 actataacag tctactgcct cagcttgtcc tagccctctc actactagcg attggtcttt
     2881 gcggtttctt ccttttaaag aaaaagaatt ttttatatcg ccgtttcttc aaggttttct
     2941 ggcgagctag ttttatcttg acctttttga tgtatctagc tttggttatt gcggtcttca
     3001 ctttaaaatc ctaaaatcat ccatcctttc atagatggca taataaatcc ccattgcagg
     3061 cgcagtgggg attctttttt atactaaatc agacaaggcg atgtagat
//
LOCUS       DASFRC010000206         3043 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.206, whole genome shotgun sequence.
ACCESSION   DASFRC010000206 DASFRC010000000
VERSION     DASFRC010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3043)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3043)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3043
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.206"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            191..1363
                     /locus_tag="U1087_002089"
     CDS             191..1363
                     /locus_tag="U1087_002089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000605383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM4756519.1"
                     /translation="MIMKITEVKKKDGSIVYRASVYLGIDAITGKKVKTNVTGRTKKE
                     VKNKTQQAIATFKTDGATRYQSATITSYKELAELWWSSYKHTVKPNTRGNIRGLLKNH
                     VIPLFGAYKLDKLTTPLLQSIVIKLADKANTGEAGAYLHYDKIHALNKRILQYGVVMQ
                     VLPYNPAREVILPRNAKKATRKKVKHFNDEQLKQFLGYLDGLDLTNYRNLYEATLYKF
                     LLATGCRINEALALSWSDIDLNNATINITKTLNRYGSINSPKSNASIRDIDIDSQTVA
                     MLKEYRRRQIQEAWTLGRSETVVFSDFIHDYPEDKTLGNRLTTRLKNIGLPNIGFHGF
                     RHTHASLLLNSGIPYKELQHRLGHSRISMTMDIYSHLSKENAKNAVAFYEKALGNL"
     gene            1501..1884
                     /gene="yaaA"
                     /locus_tag="U1087_002090"
     CDS             1501..1884
                     /gene="yaaA"
                     /locus_tag="U1087_002090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S4 domain-containing protein YaaA"
                     /protein_id="HEM4756520.1"
                     /translation="MEFKLFDDYITLQALLKTTGILYSGGAIKGFLEENTILFNGEDE
                     KRRGKKIRVGDVITLPDHNTSITIVAPSAEEIKQHQEDQAEKERVAAIVKKLNQENKN
                     NKKQVKTPKKATKKTERKPVRFPGM"
     gene            1887..2981
                     /gene="recF"
                     /locus_tag="U1087_002091"
     CDS             1887..2981
                     /gene="recF"
                     /locus_tag="U1087_002091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HEM4756521.1"
                     /translation="MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIY
                     VLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGKVPLDIHLTDKGRVTKVNHLKQA
                     KLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
                     NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREEL
                     TIEYQTSIELTDDVNLIDKFLTELEKSRKRDLFKKNTGVGPHRDDVAFFINGMNAHYA
                     SQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQIKLLETITDTIQTF
                     ITTTSLDHLHKLPDSLKIFHIESGKVTESE"
BASE COUNT         1060 a          645 c          573 g          765 t
ORIGIN      
        1 gttatctttt gcaaccctat caaaacgctc caaattcgcc tgtatcggct tctagctctc
       61 ttctggtata tttaccctac ccactccaaa caaacgaaaa taagggctat tctcgtaagc
      121 ctacgcatga tataaaccaa ctcaatctaa aaccctttta ataacagctt gcctgctgat
      181 ggaaaggttt atgatcatga aaataactga ggtaaaaaag aaagatggta gcattgtcta
      241 ccgtgccagt gtttatctag gaatagatgc catcactggt aagaaagtca agactaatgt
      301 cacgggcagg accaagaagg aggttaaaaa caaaactcag caagctattg caacttttaa
      361 aacagacggg gcaacacgct accaaagcgc caccataacc agttacaaag agttggcaga
      421 attgtggtgg agtagctata agcacacagt aaagccaaat acccgtggga acatcagggg
      481 cttactgaaa aatcatgtta taccactttt cggagcttat aagctcgata aactgacgac
      541 cccactcctc caaagtatcg tcatcaaatt agcagacaaa gcaaatacag gggaagctgg
      601 tgcctatctg cactatgaca aaatccacgc gctgaacaaa cgtatattgc aatacggtgt
      661 tgttatgcaa gttctgccat acaatccagc tcgggaagtc atattgccca ggaacgcaaa
      721 aaaagccact cggaagaagg taaaacattt caacgacgag cagcttaaac agtttcttgg
      781 ctacttggac ggcttagact taaccaatta cagaaatctg tatgaagcca ccctatacaa
      841 gttcttgctg gccactggtt gccgtatcaa tgaagcccta gcgcttagct ggtcagatat
      901 tgacttgaac aacgccacca ttaacatcac aaaaacactc aaccgctacg gctcaataaa
      961 ctccccaaaa tcaaacgcta gcatacgcga tatagacatc gatagccaga cagtagccat
     1021 gctgaaagaa tacagacggc gacagataca agaggcttgg accctcggac gttctgaaac
     1081 ggtagtattt tccgacttta tccatgacta tcctgaggat aagaccttag gaaataggct
     1141 gacaacacgc ctcaagaata ttgggctgcc taatatcggt tttcatggct tccgccacac
     1201 ccacgctagt ctactgctaa actctggaat accctacaag gaactccagc atcgtcttgg
     1261 tcattctaga atatcaatga caatggacat ctatagccac ctctcaaaag agaatgcaaa
     1321 aaacgctgtt gcattttacg aaaaagctct cgggaatctt tgagggtgta caaaaagggg
     1381 aacaaattcg gtttacaagg gtttacacca ctgtaaaaca ccttgatacg actggatttt
     1441 tagcacgtta aacacaaatc ataccatttt gtgatataat attctgtaac gaggtgactt
     1501 atggaattta aattatttga tgactacatc acattacaag cattgttaaa aacgactggt
     1561 attctctatt caggaggtgc cattaaaggt ttcttagaag aaaataccat tcttttcaat
     1621 ggagaggatg aaaaaagacg cggtaaaaaa atccgtgtcg gagatgttat cacactccca
     1681 gaccacaaca ccagcatcac aatcgtcgct cctagtgcag aggaaatcaa acagcaccaa
     1741 gaggatcaag ctgaaaaaga acgtgtggct gcaatcgtta aaaagttaaa tcaagaaaat
     1801 aaaaataata agaaacaggt aaaaactcct aaaaaagcaa ctaaaaagac tgaaagaaaa
     1861 cctgttcgtt tccctggtat gtagacatgt ggctagaacg attagagtta caacattttc
     1921 gcaattacaa ccaattagat attgagttcc acaaagggct caatgtcttt ttaggcgaaa
     1981 acgcccaagg aaaaaccaat attctagaat ctatctatgt tttagcctta acacgaagtc
     2041 atcgaacacg gacagataag gacctactac agtttcaaga aaaggaatta tctatttctg
     2101 gtttactcca tcgcacaagc ggtaaagttc cccttgacat tcacttgaca gacaagggac
     2161 gagtgaccaa ggtcaaccat ctcaaacaag ccaagctttc caactatatc ggccacatga
     2221 atgttgttct cttcgcccct gaagatttac agctgataaa aggtgcgcct gctttgagaa
     2281 gaaagttcat cgatgtcgag ctcgggcaaa tcaagccact ctatctctct gacctatcga
     2341 attataacca cgttttaaaa caaagaaata cttacctcaa atctacagat aagattgatg
     2401 agaacttcct atctgtgtta gatcagcaac ttgctgaata tggtagtcgt gttatccaac
     2461 atcgtattga ctttctaaag aaattagagg aattcggaaa tagaaaagtt caagaaatat
     2521 ctggcaatcg ggaagaattg acaatcgaat accagacctc aatcgaattg acagatgatg
     2581 tcaatttaat tgacaaattc ttgacggaac tagaaaagtc tcgtaaacgt gatttattta
     2641 agaaaaatac aggagttgga ccacatcgag atgatgtagc tttctttata aatggaatga
     2701 atgcccatta tgctagccaa ggtcagcacc gcagtctcgt tctgtcactc aaactagctg
     2761 aaattgagct gatgaaagaa gtcacacgag agtacccaat tctactctta gatgatgtta
     2821 tgagtgagct ggataataat cgtcaaatca aactattaga aactattaca gatacgattc
     2881 aaacatttat tacaacgaca tctttagacc atttacataa gctacctgat agtttaaaaa
     2941 tcttccatat tgagtctggt aaggttactg agtcagaata agattgttta cactatcgtc
     3001 aataaagttt acaaaaaagt aaagaccctg tcaagagggt ctt
//
LOCUS       DASFRC010000207         2993 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.207, whole genome shotgun sequence.
ACCESSION   DASFRC010000207 DASFRC010000000
VERSION     DASFRC010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2993)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2993)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2993
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.207"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            19..521
                     /locus_tag="U1087_002092"
                     /pseudo
     CDS             19..521
                     /locus_tag="U1087_002092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730376.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
     gene            514..981
                     /locus_tag="U1087_002093"
     CDS             514..981
                     /locus_tag="U1087_002093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase"
                     /protein_id="HEM4756522.1"
                     /translation="MARKEMVTLTNMCLIEDKEGKVVVQIRDPKRYRWSGVAFPGGHI
                     EEGENFHDSVVREVFEETGLTIANARLVGIKHWPDKEGYRYIVFLYKATEFTGTIRST
                     EEGEVRWVEKSDLSQMDLAYDLLEILKVMDEPDLSEFFYTRKNDDGEWDKNFR"
     gene            1180..1509
                     /locus_tag="U1087_002094"
     CDS             1180..1509
                     /locus_tag="U1087_002094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003087855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEM4756523.1"
                     /translation="MKKYIMTGLVLLATMTLSAYSGNTTQEDTSLKDVQEKGKLIVAL
                     NPEFPPFEFRTLVDGKDTIVGADIELAKAIGQELGVEVEFSAMSFDNVLNNVQSGQSD
                     ITFCDFN"
     gene            complement(1488..1748)
                     /locus_tag="U1087_002095"
                     /pseudo
     CDS             complement(1488..1748)
                     /locus_tag="U1087_002095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735813.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
     gene            1696..1989
                     /locus_tag="U1087_002096"
     CDS             1696..1989
                     /locus_tag="U1087_002096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018165336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEM4756524.1"
                     /translation="MEKSYTFARSSVAEIPEMVEAVIFEEPIAKAYVAKNDDLVILDT
                     EIKSSYSDAYAIALPKGSTALKEKVDSVITKLVESGQMDQFVQEAYELSISNN"
     gene            2161..2961
                     /locus_tag="U1087_002097"
     CDS             2161..2961
                     /locus_tag="U1087_002097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEM4756525.1"
                     /translation="MKKILALAATVLAGLTLAACSSTSSQSALDKIKEKGTLVVATSP
                     DYAPFEFQALVDGKNEVVGADIMLAQKIADELGVKLEVSAMSFDNVLSSVQNGKADIA
                     IAGLSYSEERAKVFDFSESYYQISDVLLIKKDSANSLTSIDAMSGKTLAVQKGSTQES
                     YAQENISQANIISLTLMGEAVNELKSGKVDAILMDSPVAAGYVSQNSDLAVASVEFPT
                     IDENSKVIALPKGSTELKTAIDKVIAEVKASGEFDTFLEKAATYTSVE"
BASE COUNT          988 a          451 c          677 g          877 t
ORIGIN      
        1 aattcggagg tcctttagat gatgattaaa ccactggaaa cgaaaagtga aatactaggc
       61 aaggcctatg ttcattggaa atcgtggcag gaggcctatg ctgacctgtt acctcaggaa
      121 tttttaaaga aaacttacac cttagaaagc tgtcaagact gggcagttcg gtatcctaag
      181 aatatcttga tagctgtgat ggatgataag gtggttggct ttgcctgtta ctgctcgtct
      241 agtcaggagg atttgcaagg ggcaggggag ctctacgccc tctatgtctt ggcggattat
      301 tatgatcaga agataggcta ccagctcatg caggcagctt tggaaaaatt gcagagctac
      361 gaaaccgtta ctctctgggt attggagggg aatgcgcgtg ctgttgcctt ctatgaaaaa
      421 gtgggcttcc gatttgatgg tgtcaaaaaa cggtcaattt aggcgcagaa cgtacagaat
      481 atagaatgat ttttaaacag aaagagagag aaaatggcta gaaaagaaat ggtcactttg
      541 accaacatgt gtctaatcga agataaggaa gggaaggtcg ttgtacagat tcgagatccc
      601 aagcgttatc gttggtctgg tgttgccttt ccaggtggac atattgaaga aggcgagaat
      661 ttccatgatt cggttgttcg tgaggtcttt gaggagactg gcttgacgat tgcaaatgca
      721 cgactagtcg gaataaagca ttggccggat aaggaagggt atcgttacat tgtatttctc
      781 tataaggcaa cagagtttac aggaactatc cgatcaactg aagaaggcga ggtgcgttgg
      841 gttgagaagt cggatctgtc tcagatggat ttggcctatg acttactaga aatcctgaaa
      901 gtcatggatg agccagattt gtccgagttc ttttatacta gaaaaaatga cgatggagag
      961 tgggacaaga attttaggta gaagctagga atagcttctt ttttatgtca tttgaataaa
     1021 atacaataaa taagttgaca aatgtataca aatgacataa aatgttttta tctttcaaaa
     1081 aaggagaaaa aatatgcatt ttgctacaat gaaagtccga tgttttatat aaaaaacggt
     1141 ataagtatgc acaggattat tttaaaggag aatatgatga tgaaaaaata tattatgaca
     1201 ggattggttt tgttggcaac gatgacccta agtgcttata gtggaaatac tactcaagaa
     1261 gatacttccc tgaaggatgt tcaggaaaag ggaaaactaa ttgttgcatt gaatccagaa
     1321 tttccaccat ttgagtttag aacactggtt gatggcaaag atacaatcgt tggagctgac
     1381 attgagcttg caaaagccat tggtcaagaa ttgggtgtag aagtcgaatt ttcagcgatg
     1441 agttttgata atgttttgaa caatgtccag tcagggcaat cggatattac cttctgtgat
     1501 tttaattgat taatcagctc tccgttcgaa gctagagcaa taaccgtgga agacggaagc
     1561 tgttctttaa taatttgttc ttgaatagaa cctttttgtg ctcctatatt tgcctcagct
     1621 agagaatcaa gcgatgtata ttgtgcaaga tcctctttat ttataataac tttattggtt
     1681 gaggtgtagt aaggaatgga aaaatcatac acttttgcac gctcttcagt ggctgaaatt
     1741 cctgaaatgg tagaagcagt tatttttgaa gagccgattg cgaaagccta tgttgccaaa
     1801 aatgatgact tggttatttt agatactgag ataaaaagta gctattcaga tgcctatgct
     1861 attgccttac caaaaggaag tacagcttta aaggaaaaag ttgactctgt cattacaaaa
     1921 ctagtggaat ctggacagat ggatcaattt gttcaagaag cctatgaatt atccatttcc
     1981 aataattaaa ttttatacga ttaaattgaa taaaaataat attttcttga caaatgtata
     2041 aaaatgaatt aaaatgagaa tacattctga aaaactgcaa gaaaatacaa tgaaaatcaa
     2101 taagcttctg ttttttagaa taagtatttt attaaaataa agagaaggta tttaggaaat
     2161 atgaaaaaaa tcttggcatt agcagcaaca gttttagcag gactgacatt ggcagcttgt
     2221 tcttcgacgt catcacaatc cgcattagat aaaattaaag aaaaaggtac attggtagtg
     2281 gcaactagtc cagactatgc tccattcgag tttcaggcac tagttgatgg aaagaatgaa
     2341 gttgttggtg cagatattat gttggctcaa aaaatagccg acgaacttgg ggttaagctt
     2401 gaagtttcag caatgagttt tgacaatgta ttgtctagcg ttcaaaatgg caaagctgat
     2461 attgcaattg ctggtctatc ttattcggaa gagcgtgcaa aagtttttga tttctctgaa
     2521 agttactatc aaatttctga tgtattactt atcaaaaaag atagcgccaa ttcactcact
     2581 tcaattgatg ctatgagcgg gaaaactctc gcggtacaaa agggttcaac acaggaatcc
     2641 tacgcacagg aaaacattag tcaagctaac ataatttctt taaccttgat gggtgaagct
     2701 gtaaatgagc tcaaatcagg aaaagttgat gctattttaa tggattctcc agttgctgct
     2761 ggttatgttt cacagaattc agatttagcc gttgcatccg ttgaatttcc aacgattgat
     2821 gagaattcga aagtcattgc tttgccaaaa ggtagtacag aactaaaaac tgcgatagac
     2881 aaggttatcg cagaagtaaa agcaagtggt gagtttgata ctttccttga gaaggctgca
     2941 acatatacaa gtgtcgaata agagaaacga gaggctgggt aaaaagtcca aag
//
LOCUS       DASFRC010000208         2934 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.208, whole genome shotgun sequence.
ACCESSION   DASFRC010000208 DASFRC010000000
VERSION     DASFRC010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2934)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2934)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2934
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.208"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..957
                     /locus_tag="U1087_002098"
     CDS             <1..957
                     /locus_tag="U1087_002098"
                     /inference="COORDINATES: protein motif:HMM:NF012744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEM4756526.1"
                     /translation="LSLGGKFFNLPPFNLTTGLRLEKMIYNIIVEEKIDIVHVHDTNS
                     GLFALKAAKRANVKCRILHSRTTNFLPNERNKIIKQAFMKIAPKFATDYFACSFNAGI
                     WGCGKNNADEIVVIKNGIQDDRYQYNSAIRMSIRKELGIENKFVVGTVSRLSPQKNIP
                     FLIKIFNDYYKIDNNSILLIVGGGDEQSVIDEINNYPEIKNNVIIAGPKKNIWDYYMA
                     MDIFCGTSFYEGFGTTAIEAQASGLPTLLSQGFPAEIEVTNFVRRLDIVDTEEWIRNI
                     KEFKNERYSESGIKSIAAYGYSAKKVAKDLENFYLEHYNEFN"
     gene            944..1927
                     /locus_tag="U1087_002099"
     CDS             944..1927
                     /locus_tag="U1087_002099"
                     /inference="COORDINATES: protein motif:HMM:NF013884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HEM4756527.1"
                     /translation="MNLIKYNYQNRISYIDLFKGCGILLMIMGHVGFGHTFEKYIHAF
                     HMPMFFFISGFLFKKKTMDFSNWIIKKFKSLILPYILWGVISLVVWYAFKGIDWKYFR
                     ILFWDNTSGIAISGALWFLMALFISDIIFFLVEYNVYNTFIKLIIYIFISSLGISLPL
                     MGLTLPFAICSACVGTSFMAIGYYIKSNEIILRNFFKLNTIYIFSSFLIGSILVTFNE
                     TVNMRTSNYGNIFLFYTSSLLIILALLYYSRKIDKYLKICPLLVIGSDSITFVCLNQI
                     CIYAIGFLCNRFGLKWDGLFFDFLFLIIVLFILWIVNELIMRSNFKCLIGK"
     gene            1981..2376
                     /locus_tag="U1087_002100"
                     /pseudo
     CDS             1981..2376
                     /locus_tag="U1087_002100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002354396.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="protein CapI"
     gene            2485..2886
                     /locus_tag="U1087_002101"
     CDS             2485..2886
                     /locus_tag="U1087_002101"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756528.1"
                     /translation="MYSKYEITHVACDRKQDVKTVYNEYKANKQQFINKIANCVKDDV
                     LKTYFSRIIHDYDEKIYIDSVERVLKNRELVSQNKDKILKTLKFYDKRNLSDCEFLNE
                     SNVEVYLNSLHINNDRLAFYLKQLNGDYNDA"
BASE COUNT          996 a          333 c          536 g         1069 t
ORIGIN      
        1 ttatctttag gtggaaaatt ctttaattta cccccattta acttgactac tggattgaga
       61 cttgaaaaaa tgatttacaa tattatagtt gaggaaaaaa tagatattgt acatgttcat
      121 gatactaatt caggattgtt tgcattgaag gcagcaaaga gggcaaatgt gaaatgtaga
      181 attttacatt ctaggacgac taatttttta cccaatgaaa ggaataaaat aattaagcaa
      241 gcgtttatga aaatcgctcc caaatttgct acagattatt ttgcatgttc ttttaacgct
      301 ggtatttggg gatgtggaaa aaataatgct gatgagatag ttgttattaa gaatgggatt
      361 caggatgata gataccaata caatagtgca attcgtatga gtataagaaa agagttagga
      421 attgagaata agtttgtagt aggaaccgtt agtcgactat ctcctcaaaa aaatatacct
      481 tttcttatta aaatatttaa tgattactat aaaatagata ataattcaat attattaatt
      541 gttggtggtg gtgatgaaca atctgtaata gatgaaataa ataattatcc tgaaataaaa
      601 aacaatgtaa ttatagccgg acctaaaaaa aatatttggg attattatat ggctatggat
      661 attttttgtg gcacatcttt ttatgaaggt tttggaacaa ctgctatcga agctcaagca
      721 tctggactgc caacccttct ttctcagggg tttccagcag aaatcgaggt aactaacttt
      781 gttaggagat tggatatagt ggatactgag gagtggattc gaaatattaa agaatttaag
      841 aatgaaagat attcagaaag tggaataaag tcaatagctg catatggtta ttctgctaag
      901 aaggtagcaa aggatttaga gaatttttat ttggagcatt ataatgaatt taattaaata
      961 caattatcaa aatagaatat cgtatattga tttatttaaa gggtgcggta ttttattaat
     1021 gataatgggg catgttggat ttgggcatac ttttgaaaaa tatatccacg catttcatat
     1081 gccaatgttc ttttttatat ctggtttttt attcaaaaaa aaaacaatgg atttttccaa
     1141 ttggattatt aaaaaattta aatctctaat acttccgtat attttatggg gagttatcag
     1201 tttagttgtt tggtatgcgt ttaaaggtat agactggaag tattttcgga ttctattttg
     1261 ggacaatacg agtgggattg ctatctctgg tgcattgtgg tttttgatgg cgttgtttat
     1321 ttcagacatc atttttttct tggtagaata taacgtttat aatacattta ttaaattaat
     1381 tatttatata tttatttcta gccttggcat ttcacttcct ttaatgggac taacattacc
     1441 atttgctatt tgttcggctt gtgtaggaac aagttttatg gcgataggtt attatataaa
     1501 aagtaatgag attattctga gaaatttctt caaattgaat accatatata tatttagttc
     1561 ttttttaatt ggttcaatac ttgtaacatt taatgagaca gttaatatga ggacaagtaa
     1621 ttatggtaac atatttttgt tctatacttc atcgctatta ataatattgg ctctacttta
     1681 ttattcaaga aaaattgata aatacttaaa aatttgtccc ctgctcgtaa ttggttcgga
     1741 ttcaattact tttgtatgcc taaatcaaat ttgtatttat gctataggtt ttttgtgtaa
     1801 cagatttggc ttaaaatggg atggtttatt ttttgatttc ctctttttaa taatagtatt
     1861 atttatttta tggattgtaa atgaattgat tatgagatca aattttaaat gtttgatagg
     1921 gaaatagttt aaatatagaa actaatacca tttttatcgg gaatatgtgc aagaaaatta
     1981 attttcaatt atggaaattg caaacgtgat tttacctatg tagatgacat agtagaaggt
     2041 gttaaacgtg tcatgtttgg cgcaccgcag aagagaagcg gaagtgatgg tctcccaatt
     2101 cctccatatg caatttataa tattggcaat agcaatcctg aaaacttatt ggattttgtt
     2161 cacatattga gtgaggaact agttttggca ggagtattgc cagcagattt tgatattgaa
     2221 gcacataaga aacttgtgcc tatgcaagca ggagatgtac cagtgaccta tgctgatacc
     2281 tctgatttgg agagagattt tggttttagc ccctctacca cactcagaga aggcttacgc
     2341 caatttgctc aatggtataa agagtattac aaatagtttt attttgctat tggggcgata
     2401 gccttttgga caaatgttat aatttgtgtc aggattagta agaaaggact aataaataaa
     2461 gttcactgct aataaggagg ttttatgtat agtaagtatg aaattactca cgtagcatgt
     2521 gatagaaaac aggatgtaaa gacagtttat aatgagtaca aggctaataa gcaacaattc
     2581 atcaacaaaa ttgcaaattg tgttaaagat gacgtattaa agacttattt tagtcggatt
     2641 attcatgatt atgatgagaa aatttacatt gattctgtag agagagtttt aaagaatcga
     2701 gaattagtat ctcaaaataa agataaaatt ttaaaaacat tgaaatttta tgataaaaga
     2761 aatctgtctg attgtgagtt tttaaatgag agtaatgtag aagtatatct aaactccctt
     2821 catattaaca atgacaggct tgctttctac ttaaaacagt taaatggtga ttataatgat
     2881 gcttaagttg tatatttgat tttactttct ttttaacaat cattattttg attt
//
LOCUS       DASFRC010000209         2891 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.209, whole genome shotgun sequence.
ACCESSION   DASFRC010000209 DASFRC010000000
VERSION     DASFRC010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2891)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2891)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2891
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.209"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(141..1607)
                     /locus_tag="U1087_002102"
     CDS             complement(141..1607)
                     /locus_tag="U1087_002102"
                     /inference="COORDINATES: protein motif:HMM:NF024832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligosaccharide flippase family protein"
                     /protein_id="HEM4756529.1"
                     /translation="MNKGNKMSSFHKQVGNALKWSSLAEIVAKLITPLSNTILARLLT
                     PEHFGVIATITMIISFADIFSDSGFQKYLVQHEFESEYELDKAANVAFSSNFLISIFL
                     WLFISLLNEQISSIVGNPGLGIVIIVAGFSLPITAFSSIQSALFKRKLEFRVLFYARI
                     LSSLVPLLITVPLAMLGKSYWSIIIGNIIGNIIISVVLSYLSDWKPNFSFNRFIFFEM
                     FSFSTWSLFESIGTWLSSYIGTFIVGSILSQYYLGLYKTSMTTVNGIFAIITSATVSV
                     LFSSLSRLQSDRTEYDFIYLDFINLVSIVIFPTGVGIYIYKNLVTSILLGKQWMEAAS
                     FVGIYGLMCCITLVLGQFASEYFRGLGKPKANVLMTFLHLIVLIPTLILSAEDGFLTL
                     AYASSLIKIQQILIYWLILWFGFKFNPLRIFNYVWKGLFSSLIMGIFGYIFIQINSGI
                     IYQFISIVACVIIYLMCYIYIFKGKLELIRIMKIFTGI"
     gene            complement(1600..2061)
                     /locus_tag="U1087_002103"
     CDS             complement(1600..2061)
                     /locus_tag="U1087_002103"
                     /inference="COORDINATES: protein motif:HMM:NF012360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine acetyltransferase"
                     /protein_id="HEM4756530.1"
                     /translation="MKRKAELVAIKARNYFLAKKYKRATFFSTVLRVVFSCDLPAEVQ
                     FHESIQLVHNGLGCVFHPKTVIAENCKIYQNVTIGGNGKIINGEIISGAPKLEKNVAV
                     FAGACVLGPITIGHDSIVGANAVVTKNVPPHSLVIGNPAQVKELNFEYNFE"
     gene            complement(2051..>2891)
                     /locus_tag="U1087_002104"
     CDS             complement(2051..>2891)
                     /locus_tag="U1087_002104"
                     /inference="COORDINATES: protein motif:HMM:NF016800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HEM4756531.1"
                     /translation="FYNDLRFLYLIGVFCVANQVLFQKFYILITGSVIGHYIIIGQSR
                     VAYGGIMGDFSFATLYLASGCLLILLLYLNDKRFKFWLFFISESFLLLSMLVVSSRTG
                     IVSLVITVVLYFIFNFKKIPKRMLVVLALGCIGVPILIDKILSSRGGQALLETSGRSE
                     NYLQSITFWLEKPLFGYGLGLENLYHSTGLAVPHNFFIQYLLQMGLVGLFLIIIPFII
                     FITNDVLRNNYSKWLFLLVVIGSMFIPDIVSSRFLYGIVLLCTIENRMFDYNNLEVLK
                     SET"
BASE COUNT         1133 a          539 c          356 g          863 t
ORIGIN      
        1 tttattaaga agaactgaac tttctctcta tccatatttc tataccaatc aagcaacctt
       61 gattcgatac caccgccgtg gaatcctggt gtataatgta acacttttat caatttatta
      121 tcccttctag tatactctaa tcaaattcca gtgaagattt tcattatccg aattaattcc
      181 agtttacctt taaaaatata aatataacac attaaatata taataacaca agctacaata
      241 gaaatgaact gatatataat gccactatta atctgaataa atatatatcc gaatattccc
      301 ataatcaacg aagaaaataa ccccttccag acataattaa atattcgaag tggattaaat
      361 ttaaaaccaa accaaagaat caaccaataa ataagtatct gttgaatctt aatcaaagaa
      421 cttgcatatg ccaaagttag aaagccatcc tcagcactca aaatcaatgt tggtattaat
      481 acaatcaaat gaagaaaagt catcaaaaca ttcgctttag gtttccctaa acctctgaaa
      541 tattctgaag caaattgtcc aagaacaagc gttatacagc acattagtcc gtatattcca
      601 acaaaactcg cggcttccat ccattgtttt cctaaaagta tactagttac taaattttta
      661 taaatatata ttccgactcc agttgggaaa attacaatcg aaaccaaatt aataaaatcc
      721 aagtaaataa aatcgtactc agttctatcg ctttgtagcc ttgataatga ggaaaacaat
      781 actgaaacag tagcagaagt aattattgca aatattccat ttactgtagt catgcttgtt
      841 ttatacaatc ctaaataata ttgacttaaa atacttccaa ctataaaagt accaatgtaa
      901 gaagaaagcc aagttcctat ggattcgaac aatgaccatg tactaaagga aaacatttca
      961 aagaaaataa atctattaaa agaaaaattg ggtttccagt cagaaagata agacaaaact
     1021 actgatatta tgatattccc aatgatatta ccaataatta ttgaccaata gctttttcca
     1081 agcattgcca aaggaactgt aattaaaaga ggtactagcg acgataatat tcttgcataa
     1141 aataaaactc tgaattcaag ctttctttta aataatgcac tttggatact ggaaaatgct
     1201 gttattggta acgagaaacc tgcaactata attacaatac ccaagccagg atttccaaca
     1261 attgaagata tttgttcatt taataaagaa ataaatagcc ataaaaatat tgaaatcaaa
     1321 aaattactgc taaaagctac atttgctgcc ttatcaagtt catactcact ttcaaactca
     1381 tgttgaacta agtatttttg aaagccagaa tcactaaata tatcagcaaa acttattatc
     1441 attgtaattg ttgcaatgac gccaaaatgc tctggagtta ataatcttgc aagaatggta
     1501 ttagaaagtg gagttataag ttttgcaact atctcagcaa gcgatgacca tttcaaagca
     1561 tttcctactt gtttgtgaaa actactcatt ttattacctt tattcaaaat tatactcaaa
     1621 gttcaattct ttaacttgtg caggattccc aattaccaag gaatgaggtg gaacattttt
     1681 agtaacaact gcatttgcac caactataga gtcatgaccg attgtaatag gtcctaaaac
     1741 acaagcacca gcaaagaccg caacgttttt ttctaattta ggtgcgccac ttatgatttc
     1801 cccgtttata atcttaccat ttccacctat ggtaacattc tgatatattt tgcaattctc
     1861 cgcgatgact gtctttgggt gaaaaacaca acctaatcca ttatgtacca actgaattga
     1921 ctcatgaaat tgaacttctg ctggtaaatc gcaagaaaat accactctca aaactgtaga
     1981 aaaaaaagtt gctctcttat atttttttgc caaaaaataa ttccttgcct taatagcaac
     2041 caattcagcc ttacgtttca ctttttaata cctccaaatt attatagtcg aacatccgat
     2101 tctcaatcgt acacaacaaa acgattccgt ataaaaatct agaactcact atatcaggaa
     2161 taaacatcga accaattaca actaataaaa acaaccactt gctataatta ttccttaaga
     2221 catcatttgt aataaaaatg atgaatggta taataattag aaacaatcca acaagcccca
     2281 tttgtaataa atattgtata aaaaaattat gaggcactgc taatccggta gagtgatata
     2341 aattttctaa tcctaatcca taaccaaaca aaggcttctc taaccaaaaa gtaatcgatt
     2401 gcaaataatt ttcagatcga ccagatgttt ctaataaggc ttgtcctcct ctagaggaca
     2461 aaattttatc aataagaatc ggaactccta tacaacccaa agctagtaca acaagcatgc
     2521 gcttaggtat ttttttaaaa ttaaaaataa agtaaagcac aactgtaata accaaagaaa
     2581 caataccagt tcgcgaagaa acaacaagca ttgaaagtaa caaaaaactt tcagaaataa
     2641 aaaacaacca aaatttaaat cttttatcat ttaaatataa taacagaatt agtaaacagc
     2701 ctgatgcaag gtacagggtt gcaaaactaa agtctcccat aatcccgcca tacgcaaccc
     2761 tgctttgccc tataataata tagtgtccga taacacttcc tgttattaaa atataaaatt
     2821 tttgaaacaa tacttgattt gcgacacaaa aaactcctat taaatacaaa aaacgtaagt
     2881 cattataaaa a
//
LOCUS       DASFRC010000210         2846 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.210, whole genome shotgun sequence.
ACCESSION   DASFRC010000210 DASFRC010000000
VERSION     DASFRC010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2846)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2846)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2846
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.210"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(134..1594)
                     /locus_tag="U1087_002105"
     CDS             complement(134..1594)
                     /locus_tag="U1087_002105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEM4756532.1"
                     /translation="MDQFFKLKEQGTTVSTEIMAGLTTFFAMSYILFVNPSVLSVAGM
                     PTQAVFLATIIASAVSTLVMGLFANVPYALAPGMGLNAFFTYTVVIGLGFTWQEALAM
                     VFLCGLFNVFITVTKVRKSIIKAIPISLQHAIGGGIGVFVAYLGFKNSNLITFLTSGS
                     DIITVNGVAPAEATAETFSNGVFSVLAGGGVVPSISTFTDPSVLLTVFGLLLTAVLVI
                     KNVRGAILIGIIATTLAGIPAGVVDLSTIDFTNNNIGTAFAELGTTFLAAFDGLSSLF
                     ADSSRLPLVLMTIFAFSLSDTFDTLGTFIGTGRKTGIFSEEDEKALENGTGFNSKMDK
                     ALFADAIGTSIGALFGTSNTTTYVESAAGISAGGRTGLTAVTTAVLFLLSILILPFIG
                     IVPNAATAPALIIVGVMMVSSFLDVDWSQFEDALPAFFAAFFMALCFSISYGIAAAFI
                     FYCLVKVSTGKAKEIHPILWGATALFILNFIILAIL"
     gene            1939..2751
                     /locus_tag="U1087_002106"
     CDS             1939..2751
                     /locus_tag="U1087_002106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM4756533.1"
                     /translation="MKKKIIAIDLDGTLLNNDSQLSDYTISTIKKVRQAGHTVLIATG
                     RPYRMAEKFYQQLELDTPMINFNGSLVHIPGKKWQWEQNILIDKKYLLEFLKEEETFE
                     ADFIAGEYKNKFYITQKNLDKIDPALMGVEQITPDTLIKPELITSDPHSILMQTRATD
                     KYELAKEMNAYFKDELEINTWGGPLNILETCAKGVNKATALSYVLNLYQATPSDLIAF
                     GDEHNDVEMLDLAGTAYAMKNCSDTLRPHADRLTAFANFEDGVARELENLFL"
BASE COUNT         1009 a          588 c          506 g          743 t
ORIGIN      
        1 actccatccg tttacaattt acaatattca atacagcatt atgctgaata aatcacattg
       61 attcccatat attttaatcg taaataaaaa aactgacctt caaatgaaga tcagttcaag
      121 gataataaac agattacaag atagctagaa tgatgaaatt cagaataaat agagctgtag
      181 caccccaaag gattggatga atttctttag ccttacctgt cgaaactttt accaagcaat
      241 agaagataaa ggctgcggca ataccgtaag agatagagaa gcaaagcgcc atgaagaagg
      301 cggcaaagaa ggctggaaga gcgtcttcaa actggctcca atcaacatca aggaaggatg
      361 aaaccatcat gactccgacg ataatcaagg ctggagctgt tgcagcattt ggcacaattc
      421 caatgaatgg taaaatcaaa attgatagta agaagagaac ggcagttgta acagctgtca
      481 gaccagtacg accacctgca gagatacctg cagccgattc aacatacgtt gttgtatttg
      541 aagtaccaaa tagtgcaccg atagaggtac caatcgcatc tgcaaagagc gccttgtcca
      601 tcttagagtt aaagcctgta ccattttcga gagctttttc atcttcttct gagaaaatac
      661 cagtcttacg acctgtaccg ataaaggtac caagtgtatc aaaggtatct gacaagctga
      721 atgcaaagat agtcatcaaa acaagtggta gacggcttga gtcagcaaag agcgaagata
      781 gaccatcaaa agccgctagg aaagttgtac caagctccgc aaaggctgta ccgatattgt
      841 tatttgtaaa atcaattgta gacagatcca caacacctgc tggaattcca gctaaagtcg
      901 ttgcaataat accaatcaaa attgcaccac gcacgttctt aataaccaaa acagctgtca
      961 agaggagacc gaaaacagtc aagagaacac ttggatctgt aaatgttgag atagatggga
     1021 ctacaccacc tcccgccaaa acagagaaga caccatttga aaaagtttct gctgtcgctt
     1081 cagcaggtgc aacaccattg acagtgataa tgtctgatcc agaagtcagg aaagtaatca
     1141 ggtttgaatt tttaaaacca agataggcaa cgaaaacccc gatacctcca ccgatggcat
     1201 gttgcaagct aatcggaatt gctttgataa tactcttacg aacctttgta acggtgataa
     1261 aaacgttaaa caaaccgcag aggaaaacca ttgccaaagc ttcttgccaa gtaaaaccaa
     1321 gaccaataac cactgtatag gtaaagaaag cattcaaccc catacctggt gccaaggcgt
     1381 aaggtacgtt agcaaataat cccataacaa gcgttgatac agcactcgca ataatagtcg
     1441 ctaaaaagac tgcttgagtt ggcatacctg ccacactcaa tacgctcggg ttaacaaaca
     1501 aaatatatga catggcaaag aaagttgtaa gtcctgccat aatttccgta gaaacagtcg
     1561 ttccttgttc tttcaattta aaaaattgat ccattttttc atttctcctt ttaatttacg
     1621 aacgataaaa atattataat caaaaaacat tctaatttca agttttttaa tctcgaaaac
     1681 gttattttat tgattttcga ctcaaaacat acgtaaatcc cgaacgttgc agacttacaa
     1741 aaatctatac aaaatttatc gcttctttgc ttttattatc tccttttgtt atactggaaa
     1801 ttattagttc aagatatggc tacctacaag tcgtattctt tgacgcataa aacaatttct
     1861 cagcaatcta gctactacct aaacattatt cactattaaa agctaacata acgaatctag
     1921 aaaggaatgc tactaaatat gaagaaaaaa atcatagcta tcgatttgga cggcacattg
     1981 ctcaataatg atagccaatt atctgattat accatctcaa ctataaagaa ggtccgccaa
     2041 gcaggacaca ccgttcttat cgccacaggt cgcccctatc gaatggctga aaaattttac
     2101 caacaactag aactggatac tcccatgatt aatttcaacg gttctttagt ccacatccct
     2161 ggaaagaaat ggcaatggga acaaaatatt ttaatcgaca aaaaatacct actcgaattt
     2221 ctaaaagaag aagaaacatt cgaggcagat tttattgctg gtgaatacaa gaataaattc
     2281 tacatcactc aaaagaactt agacaagatc gatccggctc tgatgggggt tgaacagatt
     2341 actccagata cactcatcaa acctgaatta atcactagtg atcctcattc catccttatg
     2401 cagactcgtg caactgataa gtatgaactt gcaaaagaaa tgaatgccta tttcaaggat
     2461 gagttagaaa tcaatacgtg gggcggacca ttgaatatcc tcgaaacttg tgcaaaaggt
     2521 gtcaataagg caaccgctct gagctatgtt cttaacctct accaagccac tcctagcgac
     2581 ttaattgcct tcggcgatga gcacaacgat gttgagatgc tagacctagc aggcacagcc
     2641 tatgccatga aaaattgtag cgatacactt cgtccacatg ccgacagatt gacagcattt
     2701 gctaattttg aagatggtgt cgcacgtgaa ctagaaaacc tatttttata gacatcaaaa
     2761 aacctgataa actgtcaggt ttttatcata ttcattgcat atttttatca cttttctgaa
     2821 acatgattat gaaaagtttt ggaaac
//
LOCUS       DASFRC010000211         2822 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.211, whole genome shotgun sequence.
ACCESSION   DASFRC010000211 DASFRC010000000
VERSION     DASFRC010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2822)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2822)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2822
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.211"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            261..944
                     /gene="tsaB"
                     /locus_tag="U1087_002107"
     CDS             261..944
                     /gene="tsaB"
                     /locus_tag="U1087_002107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HEM4756534.1"
                     /translation="MKILALDSSNQALSVALVEDGRLQAETLLAVKKNHSISLMPVVD
                     FLVAQVGWTPKDLNRIVVAQGPGSYTGLRVAVATAKTLAYTLKIDLVGLSSLQSLVPP
                     SLTGLVVPLIDARRNCVYAGVYENGRAVEPDRYWSFEDLLSSLSGKENITFVGEVANF
                     IEQIEQALPSAQYQASLPSAYQLAVLGQDLPAVDVTSFEPNYLKRVEAEENWLKDNQA
                     GSESYIKRV"
     gene            941..1381
                     /gene="rimI"
                     /locus_tag="U1087_002108"
     CDS             941..1381
                     /gene="rimI"
                     /locus_tag="U1087_002108"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HEM4756535.1"
                     /translation="MIEIKHYDGQENLAEAVLAVMESVYEQSPWTLEQIVTSLASQDE
                     DYYLAYEGQELVGFLAVQTVLDEMEILQIAVKADFQRMGIASQLMAAVMDWDGDIFLE
                     VRESNSAAQALYTRQHFTKIGKRKEYYRHPVEDAVLMKRERDER"
     gene            1371..2378
                     /gene="tsaD"
                     /locus_tag="U1087_002109"
     CDS             1371..2378
                     /gene="tsaD"
                     /locus_tag="U1087_002109"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HEM4756536.1"
                     /translation="MKDRLILAIETSCDETSVAVLRNDAELLSNVIASQIASHQRFGG
                     VVPEVASRHHVEVITACIEEALLEAEVTAEDLTAVAVTYGPGLVGALLVGISAAKAFA
                     WANGLPLIPVNHMAGHLMAARAVKELEFPLLALLVSGGHTELVYVSEAGDYKIVGETR
                     DDAVGEAYDKVGRVMGLPYPAGRVIDELAHEGQDIYDFPRAMIKEDNLEFSFSGLKSA
                     FINLYHNAQQKGETLSNADLSASFQACVMDILMAKTKKALEQYPVKTLVVAGGVAANQ
                     GLRERLAAEITDVEVIIPPLRLCGDSAGMIALAAVSEYNKENLAGWDLNAKPSLAFEN
                     L"
     gene            complement(2415..>2822)
                     /locus_tag="U1087_002110"
     CDS             complement(2415..>2822)
                     /locus_tag="U1087_002110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM4756537.1"
                     /translation="ALVLGHLYLFISCLIDCSLTKTSSKHDENKEFYIREAINFVERN
                     YEKAISVDDLAQVCNLNRHYFSRLFKEQMNISPQQFIIQYRLSEACELLKNTTKTLQE
                     IAEEIGYSNQFNFSTAFKRHYQISPNRWRKIHK"
BASE COUNT          699 a          582 c          791 g          750 t
ORIGIN      
        1 tccgataact aacttgaaat cacaaccgat tcttttcatt atttgaaaaa aacttcaaga
       61 tagcttacaa tagaaagtag cattgaaaag tctttcagtt tacttttagt actagataac
      121 gagctgcggg ctgtactgga gtacggcaaa gcgaattcaa ataatgatga aattatttga
      181 agtgggaaat acggaaacga agtttcctca tacatcgcag taataaaagc aaaccgaatg
      241 acgtacagaa agagaaattt atgaaaatac tagctttaga cagctccaat caggctttat
      301 cagttgcctt ggtggaggac ggtcgtttgc aggcggaaac cctgctggcc gttaagaaaa
      361 atcatagtat cagcctcatg cctgtggtcg attttttggt agcacaggtg ggatggacgc
      421 ccaaagacct gaatcggatt gtggtcgctc agggacctgg ctcctacacg ggtctgcgtg
      481 tggcggtggc gaccgccaag accttggcct acaccctcaa gattgacttg gtggggctat
      541 ccagtcttca gtctctggtt cctcccagcc tgacgggtct ggtggtgcct ctcattgatg
      601 cccgccgtaa ctgcgtctat gcaggtgttt atgaaaatgg cagagcagtc gagccagacc
      661 gctactggtc ttttgaagac ttgctttcta gcctgtctgg taaggaaaat ataacctttg
      721 tcggagaagt agcaaacttt atcgagcaaa tcgagcaagc tctgccgagc gctcagtatc
      781 aagccagtct gccgtctgcc tatcagttgg cggtgcttgg tcaagacttg ccagcagtag
      841 atgtcactag ctttgagccc aactatctca agcgggtaga ggcagaggaa aactggctca
      901 aggacaacca agctggctca gagagttata tcaagcgtgt atgatagaga ttaagcacta
      961 cgacggtcag gaaaatctag cggaagctgt gttggcagtc atggagtcgg tctatgagca
     1021 atcgccttgg accttggaac agattgtgac tagtctagcc agtcaggatg aggattatta
     1081 tctggcctat gagggtcagg aattagttgg atttttggct gttcagacgg tgctggatga
     1141 gatggaaatc ttgcagattg ctgtcaaggc tgattttcag aggatgggaa tcgccagtca
     1201 actgatggct gctgtgatgg actgggatgg agacatcttc ctcgaagtga gggagtccaa
     1261 tagtgcagct caggccctct atacacgcca gcattttacc aaaataggaa aacgaaaaga
     1321 gtactaccgc catcctgtcg aggacgcggt gctaatgaag agagaacgtg atgaaagata
     1381 gattgatttt ggcgatcgag acctcctgtg acgagacctc ggtggctgtt ttgcgaaatg
     1441 acgcggagct tttatccaac gtcattgcca gccagattgc cagccaccag cggtttggtg
     1501 gggtggtgcc cgaggtggcc agccgtcacc atgtggaagt gataacggcc tgtatcgagg
     1561 aggccttgtt ggaggcggaa gtgacggcag aggacctgac ggctgtggct gtgacctatg
     1621 ggcctggctt agttggtgcc ctgttggtcg ggatttcagc tgctaaggcc tttgcctggg
     1681 ctaacggtct gccgctcatt cctgtcaacc acatggcagg gcatttgatg gcggcgcgtg
     1741 cggtcaagga gttggagttt ccgctcttgg ccctcttggt cagcggtgga cacacagaat
     1801 tggtctatgt gtcagaggcg ggcgactata agattgtcgg tgaaacgcga gatgatgcgg
     1861 tcggcgaagc ctatgataag gtggggcggg tcatgggcct gccctatcca gctggtcggg
     1921 tgattgacga attggcacat gaggggcaag acatttatga cttccctcgg gctatgatta
     1981 aagaggataa tttggagttt tctttctctg gtttgaaatc cgcctttatc aacctctacc
     2041 acaatgccca gcagaaaggg gagaccttgt ccaatgcgga cttgtcagcc tctttccaag
     2101 cctgtgttat ggacatcctc atggctaaga ccaagaaggc cttggagcaa taccctgtca
     2161 agaccttggt ggtagcgggc ggtgtggcag ctaatcaggg cttgcgagag cggttggctg
     2221 ctgaaattac cgatgtggag gttatcattc ccccgcttcg cctctgcggt gacagtgcag
     2281 gtatgattgc cttagcagcg gtcagtgagt acaataagga aaaccttgct ggctgggacc
     2341 tcaatgccaa gcctagtctg gcttttgaga atttatagaa taaaaacctc ttacgtcaag
     2401 gatacgtaag aggtttattt gtggattttt cgccagcgat ttggagaaat ttggtaatgt
     2461 cttttaaaag cagttgaaaa attgaattgg ttggagtagc cgatttcttc agcaatttcc
     2521 tgtagtgtct tagtggtgtt ttttaagagt tcgcaggctt cgctgagtcg gtattggatg
     2581 ataaattgtt gaggtgagat gttcatttgc tccttgaata accgactgaa gtagtggcga
     2641 ttgaggttgc atacttgtgc caaatcatcg acggatatag ctttctcata gtttcgttct
     2701 acgaagttga tagcttctcg tatataaaat tccttgtttt catcgtgttt gctacttgtt
     2761 ttggttagcg aacagtcaat gaggcaggag ataaagaggt aaaggtgtcc gagaactaga
     2821 gc
//
LOCUS       DASFRC010000212         2812 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.212, whole genome shotgun sequence.
ACCESSION   DASFRC010000212 DASFRC010000000
VERSION     DASFRC010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2812)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2812)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2812
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.212"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            206..847
                     /locus_tag="U1087_002111"
     CDS             206..847
                     /locus_tag="U1087_002111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1027 domain-containing protein"
                     /protein_id="HEM4756538.1"
                     /translation="MKKEISPEMYNYNKYPGPSFARVGDKVVSENIELDLLEDYKNAF
                     DQTIFGQRFSQLMLKFDYIVGDWGNEQLRLRGFYTDDKNVKSDLKISRLDDYLTEYCN
                     FGCAYFVLANPNPQDLPAEEEDRPRRKRSRSRNRNRNQQRTEPIAPKENKSNRNDRQK
                     KGKQQNKQSEQRHFTMKNAGVKASQTERSQKRERKQSKREMNEVKRNFVIRQK"
     gene            856..1968
                     /gene="rlmN"
                     /locus_tag="U1087_002112"
     CDS             856..1968
                     /gene="rlmN"
                     /locus_tag="U1087_002112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HEM4756539.1"
                     /translation="MKPSIYAFSQANLVDWILENGEKKFRATQIWEWLYRSRVQSFAE
                     MTNLPKSLIEKLEEHFVVNPLKQRIVQESKDGTIKYLFELPDGMLIETVLMHQHYGLS
                     VCVTTQVGCNIGCTFCASGLIPKQRDLTSGEIVAQIMLVQKYLDERNQNERVSHIVVM
                     GIGEPLDNYDNVMTFLRVVNDDKGLAIGARHITVSTSGLAPKIRDFAREGVQVNLAVS
                     LHAPNNDLRSSIMRINRRYPIEVLFEAIEDYIKVTNRRVTFEYIMLNEVNDGVEQAQE
                     LADLTKNIRKLSYINLIPYNPVSEHDQYSRSTKERTLAFFDVLKKNGVNCVVRQEHGT
                     DIDAACGQLRSNTLKKDREKARARIAAAKAKAGIRA"
     gene            1965..2486
                     /locus_tag="U1087_002113"
     CDS             1965..2486
                     /locus_tag="U1087_002113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HEM4756540.1"
                     /translation="MRKFFQADGNLTKLGRQICKTLAGAYALAIVLLCFLPQTWYPQY
                     KDFSTPGIIQIGRLYLLPTPFNSIVNGDKVDSLADLGWIFLQNFTNIFLLFPLVFLLL
                     FLFKKWRSLGAVIRYTFCMSLVIESTQLLLDLLIDAQRVFEVDDLWTNTLGGVLAYLL
                     FIHIKKWVIKFTG"
BASE COUNT          851 a          505 c          628 g          828 t
ORIGIN      
        1 aaaacaaagg gcgagtaaat cgtccttttt tgctagagaa taatattata attgtcagaa
       61 atttctccta tatggtaaag taggagaatt tccagataaa tcgtgttata atgataaggt
      121 taagtgtgag aatttagatt ctgaccagat agattattaa tcaaatgatt tttacgtatg
      181 aagattttat aagataggag gacaaatgaa aaaagaaatt tcacctgaaa tgtataacta
      241 taataaatac cctggtccga gttttgctcg tgtcggagat aaggttgtat ctgaaaatat
      301 tgaattggac cttttggaag attacaagaa tgcttttgac cagacgattt ttggtcaacg
      361 tttttcacaa ctcatgctca agtttgatta tatcgtggga gattggggca atgagcagct
      421 gagattaagg ggattctata cagatgataa aaatgttaaa tcagacttaa aaatcagccg
      481 cttggacgac tatttgacgg agtattgtaa ttttggttgt gcttatttcg tcttagccaa
      541 tccgaatcca caagacttgc ctgctgagga ggaggataga ccgcgtcgga agcggagtcg
      601 ttctcgcaat cggaacagaa atcagcaacg gacggagcct attgcgccaa aagaaaacaa
      661 aagtaatcgc aatgaccgtc agaaaaaagg gaagcagcaa aataaacagt cggaacagcg
      721 tcattttact atgaagaatg ctggtgttaa ggcgagtcaa acagagcgtt ctcaaaaacg
      781 tgagcgtaag cagagcaagc gtgagatgaa tgaagtgaag cgtaactttg ttattcgcca
      841 gaaataggga gaaatatgaa accatcaatt tatgcattta gtcaagccaa tctggttgat
      901 tggattttag aaaacggaga gaagaagttc cgtgccactc aaatttggga atggctttac
      961 cgttctcgtg tccaatcttt tgcggaaatg accaacttgc caaaatcttt gattgaaaag
     1021 ttggaagaac attttgtagt taatccgctc aaacaacgga ttgtacagga gtctaaggac
     1081 ggtactatca aatacctttt tgaactgcca gatggcatgt tgattgagac agttctcatg
     1141 caccagcact atggcctttc agtctgtgta acgacacaag ttggctgtaa tatcggctgt
     1201 acattctgtg catctggatt gattcctaag caacgtgact tgactagcgg tgagattgtg
     1261 gctcagatta tgttggtaca aaagtacttg gatgagcgca atcagaatga gcgtgttagc
     1321 catatcgttg tgatggggat tggtgaaccg cttgataact acgataatgt tatgaccttc
     1381 ttgcgagtgg ttaatgacga caagggcttg gcaattggtg cccgtcacat cactgtttct
     1441 acgtcaggtt tggcaccaaa aatccgtgac tttgcacgtg aaggtgtcca agttaacttg
     1501 gcagtatctc tacatgcgcc aaataatgac cttcgttcga gcattatgcg gatcaaccgc
     1561 cgttatccaa tcgaggtctt gttcgaggca atcgaagact atatcaaggt gaccaaccgc
     1621 cgtgtgacct ttgagtacat catgcttaat gaggtcaacg atggggttga acaggcgcaa
     1681 gaattggctg atttgaccaa gaacatccgt aaattgtctt atatcaactt gattccttat
     1741 aacccagtta gtgaacatga ccagtacagt cgttcaacca aggaacgtac tcttgctttc
     1801 tttgatgttt tgaagaaaaa tggtgttaac tgtgtcgttc gtcaggaaca tggtaccgat
     1861 attgatgcag cctgtggtca attacgctcc aatacgctca agaaagaccg tgaaaaagca
     1921 cgggctcgta tcgcagccgc aaaagcaaag gcaggtattc gagcatgaga aaattcttcc
     1981 aagcagatgg aaacttgacc aagctaggaa gacagatttg taagacctta gctggagcct
     2041 atgctctggc tattgtctta ctttgttttc ttcctcagac atggtaccct caatacaaag
     2101 acttctctac gccaggcatc attcagattg gacgacttta tctacttccc actcccttta
     2161 atagtattgt caacggtgat aaggtagata gtctagcgga tttgggctgg atattcttgc
     2221 agaatttcac caacattttt ctactcttcc ctctggtttt tcttctcctt ttccttttta
     2281 aaaaatggcg gagccttgga gcagtcattc gttatacctt ttgcatgagc ctggttattg
     2341 agtctaccca gttattacta gacctactga ttgatgccca gcgggtattt gaagtggatg
     2401 acctctggac aaatacactt ggtggtgttt tggcttacct attatttatc catattaaaa
     2461 aatgggtcat caagtttaca ggatagactg tgaagagaat cagataatca tgtttgcgac
     2521 tattgagtga attttcaaat tttttagaaa attccaaaaa aacacttgac ctttactaaa
     2581 ttatgacgta taattctatg taatcagaag aattaataaa tggtttagct ttagagaatc
     2641 tatgggtggt gtgaatagat gctagaagtt tatgaaatgg actgatacca aatgtaggaa
     2701 atactttcaa aatcgttttc tagtttacgt ttgggtaagt gaattcgaaa caatgagaat
     2761 tcggtccgca ccccttatcg tgcatctcct tgtcagagga gaaagagtta tg
//
LOCUS       DASFRC010000213         2797 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.213, whole genome shotgun sequence.
ACCESSION   DASFRC010000213 DASFRC010000000
VERSION     DASFRC010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2797)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2797)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2797
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.213"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            363..1235
                     /locus_tag="U1087_002114"
     CDS             363..1235
                     /locus_tag="U1087_002114"
                     /inference="COORDINATES: protein motif:HMM:NF025953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exopolysaccharide biosynthesis protein"
                     /protein_id="HEM4756541.1"
                     /translation="MKRKLPINYLGQFYNLELEEHADIQVDDGIIAKNFCSFEVKNYA
                     TLRIGKQVFFNSSCVLRCMEKVTIGDYCLFGDGVKIYDNNHHYSHHHVEALSFSTAPI
                     HIGNHCWVGANSVILKGVTIGDNVIIGAGCTIYKDVPANTIVTSTGSMAYRPRPQYDK
                     QVTTFTASDTLEHLEYLVTSLPDIAFNILAGTHISPHLNSFRRFSNVNIYSNINDSEL
                     EDEILDRTSIYLDINHWWEVKDILNRCQQKQIPIYSFDTVAHQPELTNTMISSNHPKE
                     MVQAIQDFLKERDT"
     gene            1235..2119
                     /locus_tag="U1087_002115"
     CDS             1235..2119
                     /locus_tag="U1087_002115"
                     /inference="COORDINATES: protein motif:HMM:NF025025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM4756542.1"
                     /translation="MEKPLISIIVPIYNVENYLRQCLDSIIGQTYQNLEILLIDDAST
                     DSSVTICQEYQARDERIYLLKKTCNSGLANSRNLGIENMTGDFVTFVDSDDYLETTFI
                     EDLFTQLTLHEADIVIGEYYGFDENNGIYYIHSQEVRTEVLTIENYFSHLLTVGTITF
                     LTAWGKLFRSHLFTSKEHNRYIRFPNVRVAEDRYTTHLLVLNSHKTVYYSKNLYCYRK
                     RKGSLSDAPCSPVNTLNDIKGYETLIIDMLLAGLDPSLAVDCYKQRLLYHQQQHLTHK
                     VTENDTYRYILQKLGFQS"
     gene            2210..2488
                     /locus_tag="U1087_002116"
     CDS             2210..2488
                     /locus_tag="U1087_002116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756543.1"
                     /translation="MKLKEHLKLHMFWTGLVSLILMLIDNIASSYFGYNISQELNKIE
                     QTICIILNILLFLGILSNKKDSYGQEALDTISHKEEASDRNSSKALKT"
BASE COUNT          913 a          566 c          501 g          817 t
ORIGIN      
        1 taaagtaagt tttccaacag acataagagt ttgtgaggat caattcgtaa tctaccaact
       61 atatctaaaa agtaaaaaaa cgatgtacta ctccttagca ggctactgtt atagaaccag
      121 aacagatggt aacctcacaa gcacgttatc tgatccagaa tctatagaag atattgttga
      181 gagctacctg acacaagttt ttgatttatt cctacacgga tatcctttag aaaatagttt
      241 cccttactat agttatcgaa caagcagata tcttgcgata ctagaagaac gaggaaaaac
      301 aaatacagaa atatcaaata gactattaaa atttgcctat ttgatagaaa atggaaagca
      361 atatgaaacg taaactacca atcaattatt taggccaatt ctataattta gaacttgaag
      421 aacatgctga tattcaggtt gatgatggaa ttattgccaa aaacttttgt agcttcgagg
      481 tcaagaatta tgccacatta cgaatcggca agcaggtctt ttttaactcc tcctgtgttc
      541 taagatgtat ggagaaagtt accatcggtg actattgtct gtttggtgac ggagtcaaaa
      601 tttacgataa caaccatcac tactcccatc accatgttga agcgctctct ttcagcactg
      661 cacctattca tatcggcaat cattgttggg tcggagctaa ttctgttatc ctaaaggggg
      721 tgaccatcgg tgacaatgtg atcatcggag ctggatgtac catctataag gatgtccctg
      781 ctaatactat cgtgacctca actggaagta tggcctaccg accacgacca caatatgaca
      841 aacaggtcac aacctttacg gcatccgata ctctggaaca cttggaatac ctagttactt
      901 ccctgcctga tattgctttc aatatcttgg ctggaaccca tatctctcct catctcaata
      961 gttttcgtcg atttagcaat gtcaatatct atagcaatat caacgattct gaactggaag
     1021 atgagatttt ggatcgaacg tctatctatc tggacatcaa tcactggtgg gaagtcaaag
     1081 acatcctcaa ccgctgtcag caaaaacaaa tccccatcta tagttttgat actgtcgccc
     1141 atcaaccaga gctaacaaat accatgattt cgagtaacca tccgaaagaa atggtgcagg
     1201 ctattcaaga ctttttaaaa gaaagggata cctaatggaa aagccactta tttcaattat
     1261 tgtccccatc tataacgtgg aaaactatct caggcaatgt ttagatagta ttattggtca
     1321 aacctaccaa aacctagaaa ttcttctcat tgatgacgcc tcgacagata gtagcgtaac
     1381 catttgtcaa gaataccaag cacgagatga gcggatttat ttgctaaaaa aaacatgcaa
     1441 ctctggtcta gcaaattcac gaaatttagg tatcgaaaat atgactggtg actttgtcac
     1501 ctttgtggat agcgacgact acctcgaaac aacattcatc gaggatctgt ttacacaact
     1561 taccctccat gaggctgata tcgtcattgg agaatactat ggtttcgatg aaaacaatgg
     1621 catctactat atccattctc aagaagtgag gacagaagta ttgacgattg aaaactattt
     1681 ttcacattta ttgactgtgg gcactattac cttcttaact gcttggggca aattgttccg
     1741 tagtcactta tttacttcaa aagaacacaa tagatacatt cgctttccga atgtgagagt
     1801 agcggaagac aggtatacga cacatttact tgtcctcaac agtcataaaa cagtctatta
     1861 ttctaaaaat ctctattgct accgaaaaag aaagggaagt ctttcagacg ccccttgttc
     1921 ccctgttaat acattaaatg atatcaaagg ctacgaaacc ttgattattg acatgcttct
     1981 tgctggtctt gaccctagcc ttgccgtgga ttgctacaaa cagcgtctct tatatcacca
     2041 acagcagcac ttgactcaca aggtaaccga aaatgatact taccggtata tcctacaaaa
     2101 attagggttt caatcctaat ccgatagtta atcggtctac catcggatta gaaaacagct
     2161 atccttttgg gctatcagga gaaaatttca atgacagaaa gggattcata tgaagctaaa
     2221 agaacatctc aaactccata tgttttggac tggtcttgtt tcccttattc tcatgctgat
     2281 tgacaatatt gcctcaagtt attttggcta caatatcagt caggaattga ataagatcga
     2341 gcaaaccatt tgtattattc tcaatattct tctatttttg ggcatattaa gtaacaagaa
     2401 agacagctat ggtcaagaag cccttgatac catcagccac aaggaagaag cttctgatag
     2461 gaacagcagt aaagctttga aaacttgata gtgattcagg ctgacagctt gtggcggata
     2521 tatagcaaac caaatcaaaa acaggattag ctacgtttat caatttgaga actctaaagt
     2581 tattttagga gtgtgtttct aacactataa ctcaaacttg tcctttccct aattcaaacc
     2641 actataaaaa gctgaccttg ttatccggat tttatactca atgaaaatca aaatcagact
     2701 agccccaaag gtttggggaa actttggggg ttggagatag gcgaacgtag ttcgtttcta
     2761 cttatgcaga tagaaccctg ttactatttt gtttcaa
//
LOCUS       DASFRC010000214         2685 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.214, whole genome shotgun sequence.
ACCESSION   DASFRC010000214 DASFRC010000000
VERSION     DASFRC010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2685)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2685)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2685
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.214"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            41..2620
                     /locus_tag="U1087_002117"
     CDS             41..2620
                     /locus_tag="U1087_002117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhO family protein"
                     /protein_id="HEM4756544.1"
                     /translation="MKKIFTKTSIYYLLSFLIPLTIISIVLAFQGIWWGSDTTILASD
                     GFHQYVIFNQTLRNTLHGDGSLFYTFSSGLGLNFYALSSYYLGSFLSPIVFFFDLQSM
                     PDAIYLVTIVKFGLTGLSTYFSLKGIHKNLKEEWALLLATSFSLMSFSTSQLEINNWL
                     DVFILLPLVLLGLHRLLKKQGPILYYITLTCLFIQNYYFGYMVTIFLTLWTLVQLSWI
                     DSQRIKRFINFTIVSILSALSSMFMLLPTYLDLKTHGETFTKIVNLKTEDSWYLDFFA
                     KNLVGSFDTTKFGSIPMISVGFVPLILALLFFTLKEIKPTVKLSYALFFTFIISSFYL
                     QPLNLFWQGMHAPNMFLYRYAWALSITVIYLAAETLARLHQVSIKNFTLIVSFFLICF
                     TSTFIFRDHYEFLTDVNFLLTLEFLIAYFILFVAMIRYKSSLKWINIVLLFFTFLELG
                     LHSHYQIQGISDEWHFPSRSNYEEKLTDIDSIVKSTKTTTDSFYRIERLLPQTGNDSM
                     KFNYNGISQFSSIRNRASSSVLDKLGFRSDGTNLNLRYQNNTIIADSLFGVKYNLATT
                     DPNKFGFTLNQSQSTINLYENSFNLGLALLTKGIYKDVNFTNLTLDNQTNFLNQLTGL
                     SQKYYHTLSDVVSQNTVELSNRMTVNKVDNEDAAKATFLVNIPANSQVYLNLPNLTFS
                     NENQKKVVITVNNQSSELTLDNAFSFFNVGSFTTDVQVQVNVYFPENNQVSFDKPQFY
                     RLDLLAFQQAISILQEKQVVTKTDGNKVTVDFVTDKESSLLLTLPYDKGWNATIDGKP
                     IKIQKAQDGFMKVDVSPGQTKLVLTFVPNGFYLGLLISFGAVFVFFSYQFIGYYYSKN
                     REY"
BASE COUNT          842 a          507 c          382 g          954 t
ORIGIN      
        1 accggtcaag ttctttccca cttccttttc ttttaaatct atgaaaaaaa tatttacaaa
       61 aacatccatt tattatctct tatctttcct tattccgctg actattattt ctatcgtctt
      121 agcatttcaa ggaatctggt ggggaagtga tacaacaata ttggccagtg atggtttcca
      181 tcagtatgtt atttttaatc aaacattacg aaatacttta cacggagacg gctctttatt
      241 ttacacattt tcaagtggtt taggactcaa tttttatgct ctatcctcct attacctagg
      301 ttcattccta tctccaattg tctttttctt tgatttacaa tccatgcctg acgctatcta
      361 ccttgtcact attgtcaaat ttggattgac tgggttgtca acttatttca gtctaaaggg
      421 tatccataaa aatttgaaag aagaatgggc actattactc gctactagtt tttctctgat
      481 gagttttagt acaagtcaat tagaaataaa caactggcta gacgttttta tactcctccc
      541 actcgttctt cttggattgc atcgattatt aaaaaaacag ggtccgattc tctactacat
      601 aacattaaca tgcttgttta tccaaaacta ttacttcggt tatatggtga ctatttttct
      661 aacattatgg acattggttc aattatcatg gatagatagt cagagaatca aaagatttat
      721 caactttaca atagtgtcaa ttttatctgc tctaagcagc atgttcatgt tgttaccaac
      781 ctacttggat ttaaaaactc atggtgagac atttacaaaa attgtcaacc taaaaaccga
      841 agactcttgg tatctggact tctttgcaaa aaacttagtt ggtagctttg atacaacaaa
      901 attcggttct attcccatga tctctgttgg tttcgttcca ttaatactcg ctttactatt
      961 cttcacatta aaagaaataa aaccaactgt caaactctcc tatgctctat tctttacatt
     1021 cattatttca agtttctacc tacaaccact caatcttttt tggcaaggta tgcatgcgcc
     1081 aaacatgttc ctctatcgtt atgcatgggc tctatcaata accgttatct atttagcagc
     1141 agagacattg gcacgactac atcaagtaag tattaaaaat tttactctga ttgtttcatt
     1201 ttttctcatt tgctttactt ctacctttat ttttagagat cattatgagt ttctaacgga
     1261 tgtaaatttc ctactcacac tagaatttct aatagcctac ttcattcttt ttgtagcaat
     1321 gattcgctat aaatcatcct taaaatggat taatattgtt ttattgttct tcactttctt
     1381 agaacttgga ttacatagtc attatcagat tcaggggatt tctgatgaat ggcattttcc
     1441 tagccgatca aactatgaag aaaaattgac agatattgac agtattgtaa agtctacaaa
     1501 gactacaact gattcatttt atcgtataga acgtctatta ccacaaactg gcaatgatag
     1561 catgaaattc aattacaacg gtatttctca attctcctcc attcgaaatc gtgcttccag
     1621 ctcagtacta gataagctcg gtttccgttc agacggtacc aatttgaatc ttcgttatca
     1681 gaataataca attattgctg atagcctatt cggagtcaaa tataatttag ctactacgga
     1741 cccaaataag tttggtttca cactgaatca gagtcagtct actattaatc tttacgaaaa
     1801 tagttttaat ctagggttag ccctattgac taaagggatt tacaaagatg tcaattttac
     1861 aaatctgact ctcgataatc aaacaaattt tcttaatcaa ctaacagggc tatctcaaaa
     1921 atattaccac actttatcag atgttgtttc acaaaataca gttgaactga gcaatcgaat
     1981 gactgtcaac aaagtggaca atgaggatgc tgcaaaagca actttcttag taaatatacc
     2041 tgcaaatagc caagtatact taaatttgcc aaatttaaca ttctcaaatg agaatcaaaa
     2101 aaaagttgtc attactgtca acaatcagtc aagtgagctt acactagata atgctttctc
     2161 tttcttcaat gtggggagct ttactacaga tgtacaggtt caagtcaatg tatattttcc
     2221 tgaaaataat caagtttctt ttgataaacc acaattttat cgattggact tattagcttt
     2281 ccaacaggct atttccattc tccaagaaaa acaagtagta acaaaaactg atggtaataa
     2341 agtaactgtt gattttgtaa ccgataaaga atcctcactc ctccttactt taccctatga
     2401 taaaggatgg aatgcaacca ttgatggtaa acctatcaaa atccaaaaag cgcaagatgg
     2461 ttttatgaaa gtggatgtaa gtccaggtca aactaaacta gttttaacct ttgtaccaaa
     2521 tggtttctat ctaggtttac tgatttcttt tggtgcagtt tttgtatttt tctcctatca
     2581 attcattgga tactattatt ctaagaaccg agaatactaa actttctcgg ttttttcttg
     2641 taaaaaacaa aaaaccttga tttctcaagg tttcctattc tttat
//
LOCUS       DASFRC010000215         2621 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.216, whole genome shotgun sequence.
ACCESSION   DASFRC010000215 DASFRC010000000
VERSION     DASFRC010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2621)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2621)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2621
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.216"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            92..2587
                     /locus_tag="U1087_002118"
     CDS             92..2587
                     /locus_tag="U1087_002118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pneumococcal-type histidine triad protein"
                     /protein_id="HEM4756545.1"
                     /translation="MKQGKTFLYVAGVSLICAVALMTYQVSNYKEQSSHQKITSIETS
                     QSKQSREIPSDPKKEVPGIDKATDDGFLLTDESQIEEKTDLGIIVNHGDHKHFFFYSD
                     LKNTKWSYLIPENYQEKTHSSQPNRNQRPSGSKQTEDEYIFDPKDIVAEDANGYTVRH
                     GDHYHYILKSSLGGMTHRQLASDSRQSPTVPIIHQQEGIPGIDFQTSDGFLFDGQNIS
                     GVTETGILVRHGKHLHLIHFETLKKSKWSYLVNQYKPNVESDKKSLSEVENTEYQTKL
                     DYLAKELNLEPSRLKKVIVDGQIGLEYPHGDHTHIVLLKEIDTRKPFESPEDRILKQK
                     DGETLEQRKERLIKQYMERFKVKREDITIDGNYMSVRHGDHAHVYKIDPSLPDDPERD
                     VKTETVNLAIEQQSVYGPFYTEGSTENLTRNGVHQKYHPEGLQDIKNFILVTFSTNSD
                     FGDFVVNGKKTKRVYYLVRKDLNWEDLNIAYPQTLQQMGRVFNGWNATLPKSGKMVRE
                     HQSFYDDFDTVYRKPTKNIYTPSDDVTNIDLSDYVPVKYSAIANGRLKLNGEIRAGFI
                     YFVKSDLTWKQAKEQGLVVPEPVPSKDYEFIEFRTVITGGEKDTDYVSATTSLAAFGT
                     TAPRIGPYIAENTDNPTDINDPSRHPNYYWHDPKNYVALAFRAGEGGQLQTHLGTSKT
                     VVYLVRKGLTLNQAGIFPPSLKSDTGYKRDYTKPVIPNVAWDTPILEDTAYDIHFDKV
                     ESDSKDGTVEPGDTWLPGNPLPNTPDVPNGEEDADGWLDDLLTPGSEVETITDIETTT
                     EDTKATESSTVAPIDVPKNPSAGEESSEDSIFP"
BASE COUNT          894 a          418 c          571 g          738 t
ORIGIN      
        1 taagtggatg tggtgatgct attttacaat agttgattac atttatcgtg tcggtaatat
       61 aataatagta agtaaggaga gaaaaagtga tatgaaacaa ggtaagactt ttctttatgt
      121 agcaggagta tcgcttattt gtgctgtagc attgatgacc tatcaagtgt caaattataa
      181 agagcaatcg agtcatcaaa aaataacaag catagaaaca tcgcaatcaa agcaatcaag
      241 agagattcct tcagatccga aaaaggaagt tccagggatt gataaggcga cagatgatgg
      301 ttttttactc actgatgagt cacaaattga ggaaaaaact gatttaggaa ttattgtcaa
      361 tcatggtgat cataagcatt ttttctttta ctcagattta aagaatacaa aatggtccta
      421 tttaattcct gagaactatc aagaaaaaac acattcttct caacctaata gaaatcagcg
      481 accatctggt tcgaaacaga ccgaagatga atacattttt gatcctaaag atattgtcgc
      541 agaggatgca aatggctata ctgttcggca tggggatcat tatcactata ttttaaaatc
      601 aagcttaggt ggtatgacac acaggcaatt ggcctctgat agtcgtcaat cgccaactgt
      661 tcctatcatt caccaacagg aagggattcc ggggattgat tttcaaacga gtgatggttt
      721 cttatttgat gggcaaaata tcagcggtgt aacggaaact gggattctag taaggcatgg
      781 gaaacatttg catcttattc attttgaaac attgaaaaag agtaaatggt cttatcttgt
      841 gaatcagtat aaaccaaatg ttgaatcgga taagaagtca ttgtccgagg tagaaaatac
      901 tgagtatcaa accaaattgg actacttagc aaaagaattg aatttagagc catcacgtct
      961 taagaaagtc atcgttgacg gtcaaattgg attagagtat ccgcatggag atcacacaca
     1021 cattgtttta ttaaaggaaa ttgatacaag gaagccgttt gaaagtccag aagatcgtat
     1081 tcttaagcaa aaggatggag aaactcttga acagagaaaa gaacgtctca ttaagcagta
     1141 catggagcgt tttaaagtca agcgtgagga cattacaatt gacgggaact atatgagtgt
     1201 acgccatggg gaccatgcgc acgtttataa aattgatcct agtttgccag atgatcctga
     1261 gcgtgatgtt aagaccgaaa cggtaaatct tgcaattgag caacaatcgg tatatgggcc
     1321 tttttataca gaaggttcaa cagaaaattt aacacgtaat ggtgtccatc aaaagtatca
     1381 tccggaaggg cttcaggata ttaaaaattt cattctagta acattcagta caaatagtga
     1441 ttttggtgat tttgtcgtta atggtaagaa aacgaagaga gtttattatt tggttcgtaa
     1501 agatttaaat tgggaagatt tgaacatcgc ctatccgcag actcttcaac aaatgggacg
     1561 cgtctttaat ggttggaatg ctactttgcc aaagtctggc aagatggtaa gagaacatca
     1621 gagcttttat gatgattttg atactgttta tcgtaagccg acaaaaaata tttacactcc
     1681 aagtgatgat gttacaaata ttgatctatc agactatgta cctgttaaat atagtgcgat
     1741 agctaatggt cgtttaaaat taaatggtga gattcgagca gggttcatat actttgtgaa
     1801 atctgactta acttggaaac aagctaagga gcaggggctt gttgtaccag aaccggttcc
     1861 aagtaaagat tatgaattca tcgagtttag gacagttatt accggtggag aaaaagatac
     1921 agattatgtt agtgccacaa cgagcttggc agcatttggg acaacagctc ctcgtatagg
     1981 gccatatatt gccgaaaata cggataatcc aacggacatc aatgatccaa gtagacatcc
     2041 aaattactat tggcatgatc caaagaatta tgtagctctt gcatttcgag caggtgaagg
     2101 cggtcaactt cagacccatt tgggaacaag taaaacagtt gtttaccttg ttagaaaagg
     2161 gttaacattg aaccaagctg gaatttttcc gccatctttg aagagtgata caggttataa
     2221 acgagattat acaaaacctg ttattccaaa tgtagcatgg gacacaccta ttttggaaga
     2281 tactgcctac gatattcatt tcgataaagt tgaaagtgat agcaaagatg ggacagttga
     2341 gccaggtgat acttggttgc ctgggaaccc attgccgaat actccagatg tcccgaatgg
     2401 agaagaggat gcagatggct ggttagatga tttgttgaca cctggttcag aagtagaaac
     2461 tataacagac attgaaacta caacagaaga tacaaaagca acagaaagta gtactgttgc
     2521 acccatagat gtccctaaga atccatcagc aggggaagag tctagtgagg attctatatt
     2581 tccttgatgc aatagagatg agtgatttga aatagtggtc t
//
LOCUS       DASFRC010000216         2608 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.217, whole genome shotgun sequence.
ACCESSION   DASFRC010000216 DASFRC010000000
VERSION     DASFRC010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2608)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2608)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2608
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.217"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..770)
                     /gene="recX"
                     /locus_tag="U1087_002119"
     CDS             complement(<1..770)
                     /gene="recX"
                     /locus_tag="U1087_002119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HEM4756546.1"
                     /translation="MRITKIEKKKRLYLLEVDGQDSLYITEDTIVRFMLSKGKEITEQ
                     EFCELRDFAQFSYGKNLALYYLSFKQRTKKEVSDYLKKYEIEENNIVKIVTVLEEEKW
                     LDDGNYVDSYVRQNALNGDKGPAMIRQKLMQKGIPKLLIDKRLAEEDFSELAGKIGEK
                     LVGIYQRKLPLRALQDKVVQGLMGKGFSYETAKQSLGQLELVADEENEDDLIAKELDK
                     QYRKYSRKYEGYELKQRLIQALARKGYDFDRIQAVLRD"
     gene            808..2160
                     /gene="rlmD"
                     /locus_tag="U1087_002120"
     CDS             808..2160
                     /gene="rlmD"
                     /locus_tag="U1087_002120"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HEM4756547.1"
                     /translation="MNLQVNQRIPLKIKRMGINGEGIGFYQKTLVFVPGALKGEEIFC
                     QITSVKRNFVEAKLLKINKESKFRVKPACDIYRACGGCQIMHLRYDKQLDFKQDLLQQ
                     ALKKFKPAGYENYTIYPTIGMDKPSHYRAKLQFQTRSFKDQVKAGLYAENSHRLIGIT
                     NCYVQDAETQEIINGIAKLLTKHRIPIYNERKQHGIRTVMVRKARKTGQVQVIFITSC
                     QVNLIKLIDELTSQFPSIITIALNWNRQKTSDIYGEKTEILWGEQAIDEAVLDYEFSL
                     SPRAFYQLNPQQTEILYGEAVKALDISGDEDLIDAYCGVGTIGFAFAKKVKSVRGMDI
                     IPEAIEDAKANAKRMGLSNTHYEAGKAEEIIPKWYQEGYRADALVVDPPRTGLDEKLL
                     KTILNYKPAKMVYVSCNVSTLARDLVELSKAYKVEYIQSVDMFPHTARTEAVVKLSKK
                     "
     gene            2457..2525
                     /locus_tag="U1087_002121"
                     /pseudo
     CDS             2457..2525
                     /locus_tag="U1087_002121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012677188.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          853 a          577 c          435 g          743 t
ORIGIN      
        1 taatcacgaa ggacagcctg aatccgatca aagtcataac cctttcgagc caaagcctgt
       61 atcaaccttt gcttcaattc gtagccttca tatttacgac tatattttct atactgctta
      121 tccaattcct tggcgattaa atcatcttca ttttcctcat cagccacaag ttccaactga
      181 cccaggcttt gtttggccgt ctcataagaa aaacccttcc ccatcaatcc ctgtacaact
      241 ttatcttgca aagctcgaag aggcaatttt ctttggtata tacccaccaa tttctcccca
      301 atcttcccag caagctctga aaaatcttcc tctgccagcc ttttatcaat cagcagttta
      361 ggaattcctt tctgcatcaa cttctgacga atcatagctg gtcccttatc tccatttaga
      421 gcattctgac ggacatagct atcaacataa ttcccatcgt ccagccattt ttcctcttct
      481 agtaccgtca ctatcttaac aatattgttt tcttcaattt catatttttt tagataatca
      541 ctaacttctt ttttggtacg ttgcttgaag gaaaggtaat aaagtgctag atttttccca
      601 taagaaaact gagcaaaatc gcgaagctca caaaactcct gctccgtgat ttcctttccc
      661 ttactaagca tgaagcgaac aattgtgtct tccgtaatat ataaactatc ctgaccatcc
      721 acttcaagta aataaagacg tttcttcttt tcaatttttg taattctcat tctttcatta
      781 tacaggattt ttcggtaaaa taataatatg aatctacaag taaaccaacg aatcccctta
      841 aaaatcaaac gaatgggcat caacggagaa ggcatcggat tttatcaaaa aacgctagtc
      901 tttgtccctg gtgcccttaa gggggaagaa attttttgtc aaattacctc agtcaaacga
      961 aatttcgttg aagcaaaatt gttaaaaatc aacaaggaat caaaattccg tgtcaagccg
     1021 gcctgtgaca tctatcgagc ctgtggtggt tgtcaaatca tgcacctccg ctatgataaa
     1081 caattagact tcaaacaaga tctcttgcag caggccctaa aaaagttcaa accagctggc
     1141 tacgaaaact atactattta tccaacaatc ggtatggata agcctagcca ctatcgtgcc
     1201 aaattacagt tccagactcg atctttcaaa gatcaagtca aggccggtct ctatgcggaa
     1261 aattcccatc gcttgattgg aattacgaat tgttacgtcc aagatgccga aacacaagag
     1321 attatcaacg gaatcgcaaa gctactcacc aagcaccgta ttcctattta taatgagcgc
     1381 aagcaacatg gaatccgcac ggttatggtc cgcaaggctc gaaaaacagg tcaagttcaa
     1441 gtgatattta tcacctcttg tcaggttaat cttattaaat taattgatga actcaccagt
     1501 caatttccaa gtataatcac tattgctcta aactggaata gacagaaaac gagtgatatt
     1561 tatggtgaaa aaacagaaat tttatgggga gaacaagcta tcgatgaagc tgttttagat
     1621 tacgaattct cactatctcc acgggcattt taccaattaa atccccaaca aacagaaatt
     1681 ctctatggcg aggccgtcaa ggctttggat atttcaggag atgaagactt gattgatgcc
     1741 tactgtggcg tgggtacaat cggcttcgcc tttgctaaaa aggtcaaatc tgttcgaggt
     1801 atggacatta ttccagaagc catcgaggat gctaaagcaa acgctaagcg aatgggacta
     1861 tccaataccc actatgaggc aggtaaagca gaagaaatca ttccaaagtg gtaccaagaa
     1921 ggctacaggg ccgatgcctt ggtagttgat cctccacgaa ctggactcga cgaaaagctc
     1981 ctcaaaacca ttttgaatta caaaccagct aaaatggttt atgtatcctg caacgtctcc
     2041 actcttgcaa gggaccttgt tgagctaagc aaagcctaca aggtagaata cattcaatct
     2101 gttgacatgt ttccccacac agcacggacc gaggcggttg ttaaactaag caaaaaataa
     2161 aaggcactat aagactatga cgggtaaacc cactatggtc atatagagcc tttttgagtg
     2221 tagaaaaaag tcccctacga cctacactga tacccattta aaatcaaaaa tagccaccta
     2281 ccactcaaag tagatatgga gcattttgat tttgttattt tttgagaaaa aaacagctac
     2341 ttgaaatcca caatcctcaa ctcaaactta taaattaagg ttttacatgt tataagtaaa
     2401 ttagacttgc tatttttgat ttttattgag tatgaaaaac aacaaaactc acaatttcca
     2461 acaccaaatc agaaacaact aacaatctca tcaaagtcat taaaagaaat gcctttggat
     2521 tcaggaaaat ggaaactaga aaaacggatt ttgatgcttt gaacagtgaa aagttgagga
     2581 gagctctttt cagctcatct cctaaaaa
//
LOCUS       DASFRC010000217         2608 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.218, whole genome shotgun sequence.
ACCESSION   DASFRC010000217 DASFRC010000000
VERSION     DASFRC010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2608)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2608)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2608
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.218"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            66..1706
                     /locus_tag="U1087_002122"
     CDS             66..1706
                     /locus_tag="U1087_002122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HEM4756548.1"
                     /translation="MSEKVEMQQSKEQATMARGLAWLTAGNILSRLLGVAYVIPWYIW
                     LGEYRAEANALFSMGYQIYANFLLISTAGLPTAIAKQVAKYNVLGKEEVSLYLVREFF
                     KLMLVFGAVFAGVMYLSAPWLADASGSKEKLLPVMYSLVPPLFIFPAMSILRGFFQGR
                     HDMKPYAISQLAEQLVRVIWILAATFMIMKLGSGDYLEAVVQSTFAAFVGMIASVGIL
                     VYTLWKQGYLGKLLHAKKQKISLDTGQLIKETVRDAIPIIILGLTIQLLQFIDQVTFI
                     RVMERITDYSNSELLELYSYMAANPSKITMMIIGISLSLGSVAIPLITEKFVKKDLKA
                     ASHLVADNLQLLFIFTIPAIVGTVLLAGPLYTIFYGPSEPIAITLFIWNLFLILPLGL
                     YSVISVVIQAIFENRRAIYYFLIGMLVKIVLQVPMIYVFKVYGSFISTIFGLGIMLYL
                     FYRRIDKVLHIDERLVIKDIATISWISIVMGLIVWGIEFVLNLILPANGYVSSFIHLA
                     VAGGAGMLVFVILTLKTRQLDRLIGSRAQSLRRKLRLG"
     gene            1873..2607
                     /locus_tag="U1087_002123"
     CDS             1873..2607
                     /locus_tag="U1087_002123"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004253279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEM4756549.1"
                     /translation="MMKPKYERILIKLSGEALAGERGVGIDLKTVQEMAKEIQEVAES
                     GIQIALVIGGGNLWRGEPAAEAGMDRVQADYTGMLGTVMNALVMADSLKQLGVDTRVQ
                     TAIAMQSVAEPYIRGRALRHLEKGRIVIFGAGIGSPYFSTDTTAALRAAEIEADAILM
                     AKNGVDGVYNADPKKDANAVKFNELTHREVISRGLKIMDATASTLSMDNDIDLVVFNM
                     NEPGNIKRVVFGEPIGTTVSNSSEEK"
BASE COUNT          701 a          432 c          625 g          850 t
ORIGIN      
        1 tgattttgat tttcgaagag tatgagtttt tcctgtctta tatttacata gaaagtaata
       61 gaaaaatgtc cgaaaaagtt gaaatgcagc agtccaaaga acaggcgaca atggccagag
      121 gcttggcttg gttgactgct ggaaatattc ttagtcgcct gcttggtgtt gcctatgtta
      181 ttccctggta tatttggtta ggggaatatc gagctgaagc caatgctctc tttagtatgg
      241 ggtatcaaat ctatgccaac ttcttattga tttcaacagc tggtcttccg acagctattg
      301 ccaaacaagt agctaaatac aatgtcttgg gtaaagaaga ggtgtcgctt tacttggtca
      361 gagaattctt caagctcatg ttggtctttg gagctgtctt tgcaggagtc atgtatctaa
      421 gtgctccgtg gttggcagac gcatcggggt cgaaggaaaa gttacttcca gtcatgtata
      481 gtctagtccc gcctctcttt atcttcccag ccatgagtat tttgcgtggt tttttccaag
      541 gtcggcacga tatgaagccc tatgctatca gccagcttgc agagcagctg gtacgggtta
      601 tctggatact ggcagcaaca tttatgatta tgaagttggg tagcggtgac tatcttgaag
      661 cagttgtcca atctaccttt gcagcttttg tcgggatgat tgctagtgtt gggattttag
      721 tttatacttt atggaagcaa ggttaccttg gtaagttgct tcatgctaag aaacaaaaga
      781 tttctttgga tacaggtcaa cttattaagg aaactgttcg agatgcgatt ccaattatca
      841 ttttaggtct aacgattcaa ttattgcagt ttattgacca agtcacgttt attcgtgtta
      901 tggaaagaat tacggattac agtaattcgg aacttttgga actttattca tatatggctg
      961 ccaatccaag taagattacg atgatgatta tcgggatttc actgagtttg ggaagtgttg
     1021 ctattccatt gattacagag aaatttgtca agaaagattt gaaggcggcg tctcatttag
     1081 tggcggataa tctacaatta ctctttatat tcactatacc ggcaattgtt ggaacagtcc
     1141 tgttagctgg gccactctat acgatttttt acggaccgtc agagcctatc gccattactc
     1201 tattcatttg gaacttattt ttaattttac ctctgggact atattctgtc attagtgtgg
     1261 tcattcaagc gatatttgaa aatagaagag ccatttatta tttcttgatt gggatgctag
     1321 tgaaaatcgt tttacaagta ccaatgatct atgtctttaa ggtatatggt agctttatct
     1381 caacgatatt tgggttggga attatgctgt acctcttcta tagacgaatt gacaaggttc
     1441 tgcatattga tgaaagacta gtgataaaag atattgcgac cattagttgg atttctatcg
     1501 taatgggact cattgtatgg gggattgaat ttgtcctgaa tcttatcctt ccagcaaatg
     1561 gctatgtatc tagctttatc cacttggctg ttgcaggtgg agcaggtatg cttgtctttg
     1621 tcatcttgac attgaagact cgtcagctag atcgtttaat tggaagtcgg gctcagagtt
     1681 tacggaggaa attgcgccta ggctagtttg ttttaaagat ctctattttc tactattgaa
     1741 aagctgggaa aaagaggcgt tttagaatgt gagaaggaaa gttcgttgag gattttcctt
     1801 ttttcttgga gatttcagta taaaaaaaac ggtttttgtg gtagaatagt agggataaaa
     1861 aagaggagag agatgatgaa acctaaatac gaacgtattc taatcaaact atctggtgag
     1921 gccttggctg gtgaacgtgg tgtcggtatt gaccttaaaa ctgttcagga aatggcaaag
     1981 gaaattcagg aagtcgcaga atcaggtatt cagattgccc ttgttattgg tggtggtaac
     2041 ctttggcgtg gagaacctgc tgctgaagcg ggtatggatc gagttcaagc agactataca
     2101 ggcatgttgg ggactgttat gaatgctctt gtaatggctg attcccttaa gcagcttggt
     2161 gtggatacac gtgtgcagac agcgattgcg atgcagtcag ttgcagagcc ttatattcgt
     2221 ggtcgtgctc ttcgtcatct tgaaaaaggt cgcattgtta tttttggagc tggtattggt
     2281 tctccgtact tctcaacgga tacgacagcg gctcttcgtg ctgcagaaat tgaagcggat
     2341 gcgattttga tggctaaaaa tggtgtggat ggcgtctaca atgctgatcc gaagaaagat
     2401 gctaatgcag ttaaattcaa tgaattgacc caccgtgaag tgattagtcg tggtttgaaa
     2461 atcatggatg cgacggcatc aactctctca atggacaatg atattgattt ggtcgtgttc
     2521 aatatgaatg aaccaggaaa tattaaacgt gttgtcttcg gtgagccaat cggtactacc
     2581 gtttcaaatt cttcagaaga aaaataaa
//
LOCUS       DASFRC010000218         2565 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.219, whole genome shotgun sequence.
ACCESSION   DASFRC010000218 DASFRC010000000
VERSION     DASFRC010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2565)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2565)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2565
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.219"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..341)
                     /locus_tag="U1087_002124"
     CDS             complement(<1..341)
                     /locus_tag="U1087_002124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM4756550.1"
                     /translation="MKKTSRLFAIPYALWVFLFVLAPVALIIFKSFFDIHGNFTLANY
                     QTYFNSPNMTYLRMSFNSIFYAGIITLVTLLVSYPTAYFLTKLKHRQLWLMLIILPTW
                     VNLLLKAYAFIG"
     gene            complement(325..1479)
                     /locus_tag="U1087_002125"
     CDS             complement(325..1479)
                     /locus_tag="U1087_002125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4756551.1"
                     /translation="MKKPIIEFKNVSKVFEDSGTTVLKDISFELEEGKFYTLLGASGS
                     GKSTILNIIAGLLDASSGDIYLDGQRINDVPTNKRDVHTVFQSYALFPHMTVFENVAF
                     PLKLRKVDKAEIERRVTEALQMVRLSGYENRSIQKLSGGQRQRVAIARAIINQPRVVL
                     LDEPLSALDLKLRTEMQYELRELQQRLGITFVFVTHDQEEALAMSDWVFVMNEGEIVQ
                     SGTPVDIYDEPINHFVATFIGESNILPGRMIEDYLVEFNGKRFEAVDGGMRPNEEVEV
                     VIRPEDLQITLPEEGKLQVKVDTQLFRGVHYEIIAYDDLGNEWMIHSTRKAIVGEVIG
                     LSFEPEDIHIMRLNETEEEFDARIEEYVEVEEVEDGLINAIEEERNEENL"
     gene            complement(1518..2426)
                     /gene="murB"
                     /locus_tag="U1087_002126"
     CDS             complement(1518..2426)
                     /gene="murB"
                     /locus_tag="U1087_002126"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HEM4756552.1"
                     /translation="MKDKIRLELEGIDIRFDEPLKEYTYTKVGGAVDYLAFPRNRYEI
                     VRIVEFAKREGIPWQVLGNSSNIIVRDGGIRGFVIRMDKLNSVTVSGYTIEAETGANL
                     IETTKVALFHSLSGFEFACGIPGSIGGAVYMNAGAYGGEVAHILVSAQILTPAGYVET
                     LDNRELRFGYRSSILQENGAIVLSAKFALKPGNHTVIQQEMARLTHLRELKQPLEYPS
                     CGSIFKRPLGHFAGQLIMDAGLKGYRIGGVEVSEKHAGFMVNIENGTASDYENLIAHV
                     IQVVEKSSGITLEREVRIIGDPADTL"
BASE COUNT          807 a          563 c          476 g          719 t
ORIGIN      
        1 ccgataaagg cataggcttt cagcaaaaga ttgacccagg tcggcaagat aatcaacatg
       61 agccagagct gtctatgctt gagtttggtc aaaaaatagg ctgttgggta ggaaaccaaa
      121 agcgtgacca gagtaataat acctgcgtaa aaaatggagt taaaactcat tcgcagatag
      181 gtcatatttg gcgagttaaa ataggtctgg taattagcca aagtgaaatt gccatgaata
      241 tcaaagaaag atttgaagat aatcaaggca actggagcga gtacaaagag aaagacccat
      301 agggcatagg gaattgcaaa aagcctagag gttttcttca ttgcgttcct cctcaatggc
      361 gttaatcaag ccatcttcta cttcttccac ttccacatat tcttcgatac gggcatcgaa
      421 ttcttcctct gtttcattga gacgcatgat atgaatatct tctggctcaa aacttagtcc
      481 aatcacttct ccgacaatag ccttacgagt tgagtgaatc atccactcat taccgaggtc
      541 gtcataggcg atgatttcat agtgaacccc acggaagagc tgagtatcca cttttacctg
      601 caatttgcct tcctcaggta gggtaatctg caaatcttca ggacggataa caacttcaac
      661 ttcttcatta ggacgcatac cgccatcgac agcttcaaag cgtttgccgt taaactcaac
      721 cagatagtct tctatcatgc gacctggaag gatattggat tcaccgatga aggtagcaac
      781 aaaatggttg attggctcgt cgtaaatgtc cactggcgtc ccagactgaa caatttcacc
      841 ttcattcatg acaaaaaccc agtcactcat ggccagagct tcttcttggt catgggtaac
      901 gaagacgaag gtaattccta gacgttgttg caattcacgc agttcgtact gcatttctgt
      961 ccggagtttc aagtccaggg cagaaagtgg ttcatctagc aagacaacgc gaggctggtt
     1021 gataatcgca cgtgcaatag caacccgctg gcgttgacca ccagacaatt tctgaatgga
     1081 acgattttca taaccagaaa gtcggaccat ttgtaaggct tctgtcacac ggcgttcgat
     1141 ttcagccttg tcaacctttc gtaatttaag aggaaaagcc acattttcaa agacagtcat
     1201 atgtgggaaa agggcatagg actggaaaac agtatggaca tcccgtttat tggtcggaac
     1261 atcattaatc cgttgaccgt ccagataaat atcacctgaa ctcgcatcca ataaaccagc
     1321 aataatgttc aaaatcgttg atttacctga accagaagct cctaaaaggg tataaaattt
     1381 cccctcttcc aattcaaaac taatatcctt taatacagtt gttccactgt cttcaaatac
     1441 ttttgaaacg ttcttaaatt caataattgg ctttttcaat tctcataaat tccttctttt
     1501 ttgtaagagc ctgatggcta gagtgtatca gcaggatcgc cgataatacg aacctctctc
     1561 tccagagtaa ttcctgaaga tttttcaaca acttgaatca catgggcaat caaattttcg
     1621 taatcagatg ctgtaccatt ttctatattg accataaagc cagcgtgttt ttcagaaact
     1681 tcgactccac caattcgata accttttaaa cctgcatcca taatcaactg tcctgcgaag
     1741 tgaccaagtg gacgtttgaa gattgaacca caagatggat attccaaagg ttgcttgagc
     1801 tcgcgtaaat gtgtcaaacg agccatttct tgttgaataa ccgtatgatt acctggcttg
     1861 agggcaaatt ttgcagacaa aacaatcgca ccgttttcct gcaaaataga agaacggtag
     1921 ccaaatcgta actcacgatt gtccaatgtt tcgacataac ctgctggagt caaaatctgc
     1981 gctgaaacta aaatgtgtgc cacttcacct ccgtaagcac ctgcattcat atagacagca
     2041 ccaccaatgc ttcccggaat accacaagca aattcaaatc ctgataaaga atggaaaaga
     2101 gcaacttttg ttgtttcaat cagattggca cctgtttctg cttcaatggt gtatcctgat
     2161 acagtaacgg agttaagttt atccatacgg ataacaaaac cacgaatacc gccatcgcgg
     2221 acaatgatat tacttgaatt tcctaatact tgccatggaa taccttcgcg tttagcaaat
     2281 tctactatac gaacaatctc gtaacgattc cgtggaaaag ctagataatc aacagctcct
     2341 cctacttttg tataggtata ttcttttaaa ggttcatcga atcgaatatc gatgccttct
     2401 aattcaagcc taattttatc tttcataacc ttctcatttc aatttaagat atacaggatt
     2461 tattatacca aaaattacag gagaaaacga ataaaattca acaaaaatac tttcacaagc
     2521 caaattaatt tgtcccaata ttttgaaatg gagaatggaa tgcac
//
LOCUS       DASFRC010000219         2522 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.220, whole genome shotgun sequence.
ACCESSION   DASFRC010000219 DASFRC010000000
VERSION     DASFRC010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2522)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2522)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2522
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.220"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            379..2442
                     /locus_tag="U1087_002127"
                     /pseudo
     CDS             379..2442
                     /locus_tag="U1087_002127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917307.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease"
BASE COUNT          889 a          405 c          515 g          713 t
ORIGIN      
        1 tcttcaattt aagcttttga gccgaaacag ctcctcaaaa actaacgatg actataaaag
       61 attagagttt gccattgttg gagttcatcg ggtatgaaaa agagaaacga gttccacaac
      121 ttttgatgat tattcataag caaggttgaa aatcttttta ttggtgatag tgtagtgata
      181 ttttttaacc agaggaaagt tgttgtttct caattgtatg aaaacgctat atctaaagta
      241 atgatgctga gacactaaag tctataaaaa caggaaaagc acagatagat agcagaaaaa
      301 agatagttaa aagtgttaca attggggtgc aaattttagg ctgggaaatt attctcagaa
      361 gtattatatg gaggacttat gattccaatt caacagcatg gtaagcgctg gcttattttg
      421 acacttaccc tttctacttc agttcttgcg cttgcatcta tcggagcatc acaaccggtt
      481 gtttttgcag atgaaaactt acatttacaa tcacaaaaaa acaccaataa aatagaggtt
      541 ctggactgga aaacattttc taaaaaattg agcgaatact cctcgaacca acgacaattt
      601 catgttttga aattgggatt tgaaaatcgt cttgggacat tatcaactcg ggaagaattg
      661 gaagaatttg gtaaaaacaa caattttttg gtaatcaatg gtaaagttac tcaaaatatt
      721 catgactttc cacatatcct tgttatgaac aagggtgatg ttattgcaca taatgaggaa
      781 gattatcata atcagatgag agagttgagg ttttcgggca atggcgactt acataatagt
      841 atggagccaa aacggattca tgcactattt aagattgaac ttgactccaa taaacggcag
      901 ttattaaatg ctgcgggtct aggaactgct gagaatagtt tgaaaaatat taatggaatg
      961 actatttact cgcatggtct tacagttgat aataagtact atgaggatta tagtaaatat
     1021 actcataatt cagttaaaaa tataaacgtt accaaagagc gttttatagc aaatgatgac
     1081 ttgattcata agttgataga gtcctcagaa gctatgaagc aatcaagtga acgcgataaa
     1141 gttaaggcat ttgttcagta tgttgccaat catacaacat atgattggga agctgctaat
     1201 aaggctgttc aaaattatgc agacatcaat tactacttag gatcagattt gttcgcggtt
     1261 actgaacgtc agaaagcgat gtgtgtaggt ttcagcacta ctgcggcccg tgcatttaat
     1321 atgttagggc ttcctgctta tgttgttgtt gggaaaaatg cagaaggagt cccgcatgct
     1381 acagcgcgtg tttattatga taaaaagtgg cacaccattg acggtacagg ttttattaca
     1441 gatattactg attctaataa gcatcagcgc tcagctaaat atagtgaaaa acacttttct
     1501 actatcggtg aagatagtta tgatgttgtt gaggcaggac aggagcctaa ggcggagcgt
     1561 aactacatga ttattgatag taattatgag agttgggcta tgaaacaaaa aacagcagac
     1621 ttactgttgt tcaacaaaga aaagtccttg gttggtttgg atcatattgc atatgttgag
     1681 ccaacttata taacagaaaa taagaaaaat catttgctag acatctataa agctttgaaa
     1741 ggtaaggtag aagaagcgaa agcaacggat acagatgata aagatgataa acaagagggg
     1801 tataatcgtg ttttacaatt tgtcaattct gatattgata aattgagtac tctctccaag
     1861 attacggaag aagaatttaa agcactcgaa aattcaatgg atttagctcg agtgttcttg
     1921 gggcaaatga atgcgaaggc tggaaaagaa ttttcggaag gagaaactta tcaaagttat
     1981 ctaaagaatc gtcagaaaaa taacacaaat tcggatgatg atagaaaccg aaatgaattg
     2041 caagaaaacc aagctaattc tgatgaagtc gcccaaaatt ccaaggctgc ttcagctcca
     2101 agtgttaatt ctgcacagcg atcagaggag cttgaaggaa ctacttcaac acaggaaaca
     2161 atctcagctg ctccttctca acaaacacca gctcctaagg cactacaagc taaaactgag
     2221 ttagaggata aaacagagac ttcatcttta ggaaatacag agatggtttc accgagttca
     2281 gaaacagctc agaatacagt tgattctaag gaagaaagtg atgctaaatt accatatgtt
     2341 gagccttcat ccaaagaatc gagtgaagcg caggttaata cagtttcctc tccacaagta
     2401 agttcagcat ccccaacttc atcagaaact atttctacag atgtggcaac agcagtatcg
     2461 gaatcaagtg tagttgagag taattcagca cctcaaactt cattggaaat aactcctaca
     2521 ga
//
LOCUS       DASFRC010000220         2511 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.221, whole genome shotgun sequence.
ACCESSION   DASFRC010000220 DASFRC010000000
VERSION     DASFRC010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2511)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2511)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2511
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.221"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(251..1321)
                     /locus_tag="U1087_002128"
     CDS             complement(251..1321)
                     /locus_tag="U1087_002128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM4756553.1"
                     /translation="MKRLYSFFVGIIAIVLVLWGISYKLEADSTQGTTDKLVIYNWGD
                     YIDPELLAEFTAETGIQVDYQTFDSNESMYTKIKQGGTTYDLTIPSEYMISKMTEENM
                     LIKLDKSKIEGIENIDPRFMGLSFDKNNDYSIPYFWGTLGIVYNETMVENPPQEWEDL
                     WSEEYRDNIMLIDGVREVMGFGLQSLGYSLNSNNPTEIEKAAEHLYNLTPNVKAIVAD
                     EIKGYMIQDAAAIAVSFSGEASEMLDGNENLRYVVPSKGSNLWFDNMVIPKTAKNIDG
                     AYAFMSFMLRPENALRNAEYVGYSTPIPAAKAMLDEETQNDESFYPSEETMKKMEVYD
                     NLGPEMLGMYNDLYLQFKMYRK"
     gene            complement(1321..2091)
                     /locus_tag="U1087_002129"
     CDS             complement(1321..2091)
                     /locus_tag="U1087_002129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM4756554.1"
                     /translation="MKKFANIYLTVAFLLLYLPIFYLIFYAFNEGGDMNGFTGFTLEH
                     FSSMLGDSRLMLILAQTFLLAFLSSLIATIIGTFGAIYIYQAKPRFQNALLSVNNILM
                     VAPDVMIGASFLILFTMIGFQLGFVSVLLSHIAFSIPIVVLMVLPRLKEMNADMISAA
                     YDLGATQPQMLKEIMLPYLTPAIIAGYFMAFTYSLDDFAVTFFVTGNGYSNLSVEIYS
                     RARQGISLEINALSTLVFLFSILLVVGYYFISREKEAN"
     gene            complement(2091..>2511)
                     /locus_tag="U1087_002130"
     CDS             complement(2091..>2511)
                     /locus_tag="U1087_002130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019321223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM4756555.1"
                     /translation="FIGLGAQQILFTDFSFIAVAAYIEIPFMILPIFNALDDLDKNLI
                     NASRDLGATPWQTFTKVIFPLSMNGVRSGVQAVFIPSLSLFMLTRLIGGNRVITLGTA
                     IEQHFLTTQNWGMGSTIGVVLILAMLLIMWMTKERKK"
BASE COUNT          814 a          507 c          466 g          724 t
ORIGIN      
        1 ttcataactt ttcctcctag tttttctcct tcattattgg caaagccaat aaatatatta
       61 aaacataaaa ttatcagcat tgcaagtata ttctgaaaat tcagttattt attcaaacta
      121 tagctaggta tagttaatat ttataactgg actctgtgat actgaatgta ttaaatgaac
      181 agtaaaaagc aaccactatt tgcggttgct catactattc tgacttgaaa actagatatg
      241 gatattcaga ctatttccga tacatcttga attggagata gaggtcatta tacattccaa
      301 gcatctctgg tccaagatta tcataaactt ccatcttctt catcgtttct tctgaaggat
      361 agaaggattc gtcgttctga gtttcttcat ccaacatggc ttttgctgca ggaattggtg
      421 ttgagtagcc aacatattct gcattgcgaa gcgcattttc aggacgaagc ataaaactca
      481 taaaggcgta agctccatca atattttttg ctgtttttgg aataaccatg ttatcgaacc
      541 aaaggttaga accttttgat ggtacaacat agcgcagatt ttcatttcca tctaacattt
      601 cactcgcctc acctgagaac gaaacagcaa ttgctgccgc atcttgtatc atataacctt
      661 ttatctcatc agcaacaatt gctttgacat ttggagttaa attatataga tgttcggctg
      721 ccttttcaat ctcggtaggg ttgttggaat tgagactata gcccagtgat tgtagaccaa
      781 agcccatgac ttcacgcaca ccatcaatta acatgatatt gtcacggtac tcctctgacc
      841 acaagtcttc ccattcctga ggaggatttt ctaccatggt ttcattgtaa acaatgccca
      901 aggttcccca gaaatatgga atagaataat cattattctt gtcaaagcta agtcccataa
      961 atcgtggatc aatattttct atcccttcaa tcttagactt atctagcttg attaacatat
     1021 tttcttctgt catcttagaa atcatgtact cagatgggat tgtcaaatcg tatgttgttc
     1081 caccctgctt aatcttggtg tacatcgatt cattggagtc aaaggtctga taatctacct
     1141 gaatacctgt ttcagcagtg aattctgcga gtaattctgg gtcaatataa tcgccccagt
     1201 tatagatgac aagtttatca gttgtccctt gggttgaatc agcttctaac ttataactaa
     1261 ttccccataa aactaggaca atagctataa ttcctacaaa aaatgaatac aatcgtttca
     1321 ttagttggcc tccttttcac gtgagatgaa ataataaccc acgaccaata agatagagaa
     1381 aaggaaaaca agggttgata gggcattgat ttccaaagaa atcccttgac gagcccgcga
     1441 gtagatttca accgaaaggt ttgaatagcc attccctgtc acaaagaagg tcacagcaaa
     1501 gtcatccaag gaataggtaa aggccatgaa gtagcctgca atgatggctg gtgttaggta
     1561 tggcaacatg atttctttca gcatttgtgg ctgagttgcc cccaaatcat aagctgctga
     1621 aatcatatcg gcattcattt ccttcaagcg tggcaaaacc atcaatacta cgattggaat
     1681 agaaaaagca atatgactga gcaatactga gacaaagcca agctggaaac caatcatggt
     1741 aaagagaatt aggaaactcg ccccaatcat gacgtctgga gctaccatca agatattatt
     1801 gacagacaag agtgcatttt gaaaacgagg ttttgcctga tagatataga tggcaccgaa
     1861 agttccgata atggtcgcaa tcaaagaact caagaaggcc aacaagaagg tttgagccag
     1921 aatcagcatt agtcggctat cgccaagcat agatgaaaaa tgctccaagg taaagcctgt
     1981 aaagccattc atatctccgc cttcattaaa ggcataaaaa ataagataga aaatcggtaa
     2041 gtagagaagg agaaaggcaa ctgttaagta gatatttgca aatttcttca ttatttcttc
     2101 ctctctttcg tcatccacat aatcaagagc atggctaaaa tcaagaccac acctatggtt
     2161 gaacccattc cccagttttg tgttgtgaga aagtgttgtt cgatagctgt accaagcgtg
     2221 atcactcggt taccgccaat caaacgggtc aacatgaaga ggctcagact tggaatgaaa
     2281 accgcctgta caccagaacg gacaccattc atagaaagag gaaaaataac ttttgtgaag
     2341 gtctgccaag gagttgcccc caaatcacga ctggcattga ttaggttttt atccaaatca
     2401 tccaaggcgt taaagatcgg caaaatcata aacggaatct cgatataggc tgcaacagca
     2461 ataaaggaga aatctgtgaa aagaatttgc tgagctccta gaccaataaa t
//
LOCUS       DASFRC010000221         2462 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.222, whole genome shotgun sequence.
ACCESSION   DASFRC010000221 DASFRC010000000
VERSION     DASFRC010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2462)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2462)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2462
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.222"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..645)
                     /locus_tag="U1087_002131"
     CDS             complement(<1..645)
                     /locus_tag="U1087_002131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEM4756556.1"
                     /translation="MKNKQIHLRNASFFALAFVILGYVVKFYPTTLAGFDSTVQSAIR
                     GNLPSGASQFWTSITVLGNTVIILAITMILAAIFYYYKKWKIEASFLLASFAAMGVAS
                     TALKYVYQRPRPSIEWLIDTIGYSFPSWHTASTMMIAGAVVIIVHQRMKKGIARLVLQ
                     AMLILLAILVAVSRIYIGVHYPTDIIGGWLLAVTLLQMMYPFYDQKRFEWRFQSK"
     gene            complement(670..1227)
                     /locus_tag="U1087_002132"
     CDS             complement(670..1227)
                     /locus_tag="U1087_002132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HEM4756557.1"
                     /translation="MTNTRKMTIIAILSAVSFLLMYLKFPLIPTASFLEVDFSLVPIL
                     FGLLVLDMKSSFAILLVRTFLKLILNNQGPSTIIGLPMNIAAMSVFILAVAYFWKNDQ
                     ALKNYLKAATIATLGSTAVMLVLNYVYAVPVYAAFANFDIKEILGLTNYLLMMVFPFN
                     LLQGIVLSAIFYICYKAAQPILKKV"
     regulatory      complement(1287..1501)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            complement(1551..2096)
                     /locus_tag="U1087_002133"
     CDS             complement(1551..2096)
                     /locus_tag="U1087_002133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HEM4756558.1"
                     /translation="MNIETLEYIEETAKNHIVLFEPQIPQNTGNIARTCAATNSPLHI
                     IKPMGFPIDDRKMKRAGLDYWDKLDVRFYDNLAEFMDYASKQGRVHLVSKFADKTYSD
                     EDYNDGNIHYFLFGREDKGLPEYFMREHPEKAIRIPMNDEHVRSLNVSNTACMIVYEA
                     LRQQQFAGLDLVHTYDGDKLK"
BASE COUNT          798 a          499 c          451 g          714 t
ORIGIN      
        1 cttactttgg aaacgccatt caaagcgttt ttggtcataa aatggataca tcatttgtaa
       61 aagagtgacg gcaagtagcc aaccaccgat aatatctgtc ggatagtgaa ccccaatata
      121 gatacgggat acagctacca ggatagcaag tagaatcaac atggcttgta gcacaagtct
      181 agctatgcct ttcttcatcc tctggtgaac aataataaca actgctcctg caatcatcat
      241 agttgatgca gtatgccagc taggaaatga gtaaccgatg gtatcaatca accattcaat
      301 acttggacgc ggacgttggt agacatattt cagggctgtg gatgccaccc ccatcgccgc
      361 aaaactagca agtaggaaag aagcttctat cttccatttt ttatagtagt aaaagatagc
      421 agctagaatc atggtaatag ctaaaataat aactgtattt cctaaaacag taatagaggt
      481 ccaaaattga ctggctccac ttggtaaatt tccacgaatg gcagactgga cagtcgagtc
      541 aaaacctgct agggtagtag gataaaattt tactacatag cccaatatca caaaggctag
      601 agcaaaaaaa gatgcgtttc gtaaatggat ttgtttattc ttcatacagt atagtttacc
      661 ttataaaggt taaactttct ttaaaatagg ttgggctgct ttgtaacaga tataaaatat
      721 tgctgaaagc acaatccctt gtaaaagatt aaaaggaaat accatcatca aaagatagtt
      781 agtcagaccc aagatttctt taatatcaaa atttgcaaag gctgcataga caggcaccgc
      841 ataaacgtaa tttaatacca gcatcactgc tgtcgaacca agcgtcgcaa tagtcgctgc
      901 ttttaaataa ttttttaacg cttggtcatt tttccagaaa taagctactg ctaaaatgaa
      961 aactgacata gctgcaatat tcatcggtaa gccaataatt gtcgatggtc cctgattatt
     1021 taaaatcagt ttgagaaaag ttcgtaccaa aaggatagca aaactagact tcatgtctag
     1081 aacaagcaga ccaaataaaa tcggtacgag agaaaaatcc acttccaaga aactggctgt
     1141 tggaatcagc ggaaatttca aatacatgag cagaaaggat actgctgaga gaatggcgat
     1201 aatcgtcatt ttgcgtgtgt ttgtcataag gttcctccaa tttttgaaaa ttgaagaagc
     1261 gtggaagagc aggcaaaaag cctccacttc gtcttctccc atccagactt tactgtcggt
     1321 tgtggaattg caccacatca gctttcgctc gcagactacc aacggtctat tttgttctaa
     1381 tactgcgtta gctcatctcg acatacattc agtatggtct tcgattcgct gcctagtctt
     1441 aaaacaaatt accacgtttt acactgccgg tcgggaattt caccctgccc tgaagactat
     1501 ttcatcatac caaaaaagcc ttgcatttgc aagagcttgg taagttttca ctattttaac
     1561 ttgtccccat catatgtgtg aaccaaatct agaccagcaa actgttgctg ccgaagagcc
     1621 tcatatacaa tcatacacgc tgtattagag acattaagac tacgcacatg ttcatcattc
     1681 attggaatac ggatagcctt ctctggatgt tcacgcataa aatattctgg caagccctta
     1741 tcttcacgac caaataagaa ataatgaata ttcccatcat tatagtcttc atccgaatag
     1801 gttttatcag caaatttaga tactaagtga acacgtcctt gtttgctggc ataatccatg
     1861 aattctgcta aattgtcata gaagcgaaca tctaacttat cccaataatc tagtcctgca
     1921 cgtttcatct tacggtcatc aattggaaat cccataggct taatgatatg gagaggacta
     1981 ttggttgcag cacaagttcg agcaatattg cctgtattct gtggaatctg tggttcaaat
     2041 aagacaatgt ggtttttggc tgtttcttct atatactcta atgtttcaat attcataagg
     2101 acctctctgg tgacatttca ctaaacacga ataccctcga aaatcaaatc caaaccatgt
     2161 cagctgcatt ttaccgtata ccagtacggt ctgttgcttg ttgtctagtt tctttttttg
     2221 attttcattg agtaaaaaga ctcgactgtc tcctatggca agaaagacaa aaaaatagcc
     2281 acactgcccg gagtcaagct cagcaaacag catggtgaat gatgattcat tcacttaact
     2341 cacaacaggt ttgagttaaa tcaatgaaat cgtgatacta ttgtagctta aagaaggctg
     2401 aaaatcaaga gttttgcccc atttttttca aattttcata gaaaatcatg gaggctgggc
     2461 aa
//
LOCUS       DASFRC010000222         2415 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.224, whole genome shotgun sequence.
ACCESSION   DASFRC010000222 DASFRC010000000
VERSION     DASFRC010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2415)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2415)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2415
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.224"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..143
                     /locus_tag="U1087_002134"
     CDS             <1..143
                     /locus_tag="U1087_002134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM4756559.1"
                     /translation="DPELRKEVEKLILENRATGITQIVVTHDMQFAENIADEIIKIEP
                     KH"
     gene            157..999
                     /locus_tag="U1087_002135"
     CDS             157..999
                     /locus_tag="U1087_002135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM4756560.1"
                     /translation="MMMNMKKMMLGAAALVTSFALVACGSSQSTTKSDNWSTYESEKS
                     ITIGFDKTFVPMGFEEADGTYTGFDIDLATAVFDKYGIAIEWQPIDWDLKETELNNGN
                     IDLIWNGYSVTDERKEKVLFTDSYMDNQQVLVTKKSSNISQVSDMKDKILGAQAGSSG
                     YSVFESQPAILKDIVQNNDASQYATFNEALIDLKNDRIDGLLIDRVYANYYLQQEGII
                     ADYNIIDAGFENESFAVGARKSDTTLVENINKAFTELYNEGKFQEISQKWFGEDIATD
                     AVKN"
     gene            complement(1136..2326)
                     /locus_tag="U1087_002136"
     CDS             complement(1136..2326)
                     /locus_tag="U1087_002136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018167465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEM4756561.1"
                     /translation="MKQQIQNLKLAERGAIVSITAYIALSGIKLAAGSMFHSDALTAD
                     AFNNISDIIGNIAVLVGLRMAQKPADTDHKFGHWKMEDLASLITSFIMFVVGFQVLYS
                     TLIKIMSNQTVEIDLTGAIVGIFSALVMVGVYLYNKSLAKKVHSKALEATAKDNLSDA
                     VTSIGTSIAIIAAALNFPIVDKIAAVIITFFILKTAYEIFMESFFTLSDGFDEELLHK
                     YEEDILKLPKIVAVKSQRGRTYGSNIYLDIVLEMNPDLSVYESHEITEQVEQLLTLKH
                     GVFDVDIHVEPTEIPHDELFEHVFDKLYRLESEIQAHEVGYEELIDDNYLLIDAKGRY
                     LNKADMLKAHPVQSTYLSNYQMTSVSQKSKLVTFEIGDYVHTSLWRRHENWTVVFHQI
                     SKKA"
BASE COUNT          762 a          418 c          509 g          726 t
ORIGIN      
        1 tagaccctga attgagaaaa gaagttgaaa aactcattct tgaaaatagg gctactggaa
       61 tcacgcaaat tgtggttacc cacgatatgc aatttgccga aaatatagca gatgaaatca
      121 tcaagattga accgaaacat taagaaaagg aataaaatga tgatgaatat gaaaaaaatg
      181 atgcttggag ctgcggctct tgtaaccagt tttgctcttg ttgcttgtgg ctctagccag
      241 tcaacaacta agtctgacaa ttggtcaact tatgaatctg agaagtctat tactattggt
      301 tttgataaga cctttgtccc aatgggcttt gaagaggctg atggtacata tactggtttt
      361 gatattgatt tggcaacagc agtttttgac aaatatggta ttgcgattga atggcaacct
      421 attgactggg atttgaaaga aactgaatta aacaatggca atattgattt gatttggaat
      481 ggctattctg taactgatga gcgcaaggag aaagtactct ttacggattc gtatatggat
      541 aaccaacaag tacttgtgac gaaaaaatct tcgaatatca gtcaagtttc tgatatgaag
      601 gacaaaattt tgggtgcgca agcaggttct tctggttact cagtctttga atctcaacct
      661 gcaatcttga aagacatcgt tcagaataat gatgcaagtc agtatgcgac atttaacgaa
      721 gccttgattg acttgaaaaa tgatcgtatc gatgggctct tgattgaccg tgtttatgca
      781 aactattact tgcaacaaga gggaattatt gcagactaca atattatcga tgccggtttt
      841 gaaaatgaat cttttgcagt aggtgctcgt aagtcagata cgacacttgt tgagaatatc
      901 aacaaagctt ttaccgaact ttacaatgaa gggaaattcc aagaaatttc acaaaaatgg
      961 tttggtgaag atattgctac agacgcagtg aaaaactaat actcttcgaa aatcaaaaat
     1021 atccattgtc aagagccttg atgaacttca gttctatcgt cggcttcgtt tcctaggcta
     1081 tttttgattt tcattgagta taaataatta taaacgaaaa gccttgtcgc aatgactagg
     1141 cttttttgga tatttgatga aatacaactg tccagttttc atgccgtcgc cagagggatg
     1201 tgtggacgta gtcgccaatt tcgaaggtga ctagtttgga tttctgactg acagaggtca
     1261 tttggtagtt ggagaggtag gtggattgta cagggtgagc ttttaacata tcagccttgt
     1321 tgaggtaacg acctttggca tcaatcaaga gatagttatc atcaattaac tcttcataac
     1381 cgacttcgtg agcttgaatt tctgattcca agcgataaag tttatcgaag acatgttcaa
     1441 acagttcgtc atgcggaatt tcggtgggtt cgacatgaat atcaacatca aaaacaccat
     1501 gttttaaggt gagaagttgc tctacctgtt ctgtaatttc gtggctctca tagaccgata
     1561 gatcaggatt catttccagg acaatatcca gataaatatt tgagccatag gttctgccac
     1621 gttgggattt gacggcaaca attttgggga gtttgagaat atcttcttca tatttatgta
     1681 ggagctcctc gtcaaaacca tctgaaagcg taaagaaact ttccatgaaa atctcatatg
     1741 cagtttttaa gatgaagaag gtaataatca ccgcagcgat tttatcgaca ataggaaagt
     1801 tgagtgctgc tgcaataata gctatagaag taccgataga agtcacggcg tcggagaggt
     1861 tatcttttgc ggttgcttct aaggcttttg aatgaacctt cttagcgagt gatttgttgt
     1921 aaagataaac acctaccatt acaagtgctg agaaaatacc aactattgct ccggtcaaat
     1981 caatctctac agtttggttg ctcatgattt tgataagggt ggagtaaagg acttggaaac
     2041 caaccacaaa cataataaag gaagtaatca gactagccaa atcttccatt ttccagtgtc
     2101 caaacttatg atcagtatcc gctggtttct gagccattcg tagaccgact aggacggcga
     2161 tattgccaat aatatccgaa atattattaa aggcatcggc agtcagtgca tcagaatgga
     2221 acatactccc agcagctagc ttgatacctg agagagcaat ataggctgtg atagagacaa
     2281 tcgcaccacg ctcggcaagt tttaagttct gaatttgttg tttcatagct cctcctaaac
     2341 atattcattt attctaacaa aaagtctacc tgctttcaag aaactcagat agacttttta
     2401 gtttgaagat agcga
//
LOCUS       DASFRC010000223         2326 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.225, whole genome shotgun sequence.
ACCESSION   DASFRC010000223 DASFRC010000000
VERSION     DASFRC010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2326)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2326)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2326
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.225"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            45..130
                     /locus_tag="U1087_002137"
     tRNA            45..130
                     /locus_tag="U1087_002137"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:79..81,aa:Leu,seq:aag)
     gene            365..1246
                     /locus_tag="U1087_002138"
     CDS             365..1246
                     /locus_tag="U1087_002138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001018994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-bisphosphate aldolase"
                     /protein_id="HEM4756562.1"
                     /translation="MPLVSAEKFVQAARDNGYAVGGFNTNNLEWTQAILRAAEAKQAP
                     VLIQTSMGAAKYMGGYKVARNLIANLIETMNITVPVAIHLDHGHYEDALECIEVGYTS
                     IMFDGSHLPVEENLAKAKEVVELAHAKGISVEAEIGTIGGEEDGIVGTGELAPIEDVV
                     AMVATGIDFLAAGIGNIHGPYPANWEGLDLDHLRKLTEAVPGFPIVLHGGSGIPDAQI
                     QEAIKLGVAKVNVNTECQIAFANATRKFAAAYEANEAEYDKKKLFDPRKFLADGVKAI
                     QASVEERIDVFGSANKA"
     gene            1641..1829
                     /locus_tag="U1087_002139"
     CDS             1641..1829
                     /locus_tag="U1087_002139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008536053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HEM4756563.1"
                     /translation="MAKVCYFTGRKTISGNNRSHAMNQTKRAVKPNLQKVTVLIDGKP
                     KKVWASARALKSGKVERV"
BASE COUNT          789 a          393 c          505 g          639 t
ORIGIN      
        1 gttgacaagg ctagttccta atgatatact agttcttgtg ttaagcgggg atggcggaat
       61 tggcagacgc gcaggactaa ggatcctgtg accgctttag gtcgtgtggg ttcaagtccc
      121 actctccgca tagtggacta gctaaggcta gtccttttgc tttgtctaga taagtgcaga
      181 gcacgatata tgctagttca taaattacaa gaatgatacg aaacaggcat tattatggct
      241 ttcatgaaaa gatatgtgaa agttttctca aaactagacg gtttcaacta gcattttcaa
      301 aataaaaatg gtagaataga agagtatgag gtgcaacctc aaaaaatatt aggaggctat
      361 cgaaatgcca ttagtttcag cagaaaaatt tgtccaagca gcgcgtgaca acggttatgc
      421 agttggtgga tttaacacaa acaaccttga gtggactcaa gctatcttgc gtgcagcaga
      481 agcaaaacaa gctccagttc ttatccaaac ttctatgggt gcagcgaagt acatgggtgg
      541 ttacaaagta gctcgtaact tgattgcaaa cttgattgaa acaatgaata ttacagttcc
      601 agttgctatt caccttgacc acggtcacta cgaagatgca cttgagtgta tcgaagttgg
      661 ttacacttct atcatgtttg acggttcaca ccttccagta gaagaaaacc ttgcaaaagc
      721 aaaagaagtt gtagaattgg cgcacgctaa aggtatctca gttgaagctg aaattggtac
      781 tatcggtggt gaagaagatg gtatcgtagg tactggtgaa ttggctccaa ttgaagacgt
      841 agtagcaatg gttgcaactg gtattgactt cttggcagca ggtatcggta acatccacgg
      901 tccataccca gcaaactggg aaggtcttga ccttgaccac ttgcgtaaat tgactgaagc
      961 tgtaccaggt ttcccaatcg tattgcacgg tggttcaggt attccagatg cacaaatcca
     1021 agaagcaatc aaattgggtg ttgctaaagt taacgtaaac actgagtgcc aaatcgcatt
     1081 tgcaaacgca actcgtaagt ttgcagcggc ttatgaagca aacgaagcag agtacgataa
     1141 gaaaaaactc tttgacccac gtaaattctt ggcagacggt gtgaaagcta tccaagcatc
     1201 tgttgaagag cgtatcgacg tattcggttc agcgaacaaa gcttaatgta actgcgaaga
     1261 aatctcagat ttcaagtaaa caaagcacaa gtttcttaga ttaaaccaaa aaggattttc
     1321 tttcgagaat ccttttttta ttatgtagtt gattaagttt gatctagttc tttgccatga
     1381 agaaatctac gatagaagtg agcagagaac agttaaaata taaactgctc caaagttttc
     1441 ataactgtaa taacttagag aacgaagaat tatggatggg gcgcaaactg tagtattaaa
     1501 atatttacct atgagtatag atactttaaa aaaataaaaa tgaaaataat tcttgccaag
     1561 tccaatcttt tctgttagaa taatatggta tgtggtgcta gcacatccga tatatttgat
     1621 caaatgagga ggaagataca atggctaaag tatgttattt cactggtcgt aagactatat
     1681 caggtaacaa ccgttcacac gctatgaacc aaactaaacg cgcagttaaa ccaaaccttc
     1741 aaaaagtaac tgttttgatt gatggtaaac ctaaaaaagt ttgggcttca gcacgtgcac
     1801 taaaatcagg caaagttgaa cgcgtataat gacaaagtcg ttagaaaaat ctagcgactt
     1861 ttgtttttgg aaaaaatagc ctagatataa agtcggtgag gagcaaattc ggccactaca
     1921 taataaacag gaaagaatat cagctatata gctcttcaca ttgttgctga aaagttaaca
     1981 aagaaggaat gttgtcaaaa ataaactgtg tattgatgtg ggagattttc tcaagcacga
     2041 acatataaac ttggattgac attaggagga gcatatctgt actgattcta taagaaggga
     2101 atcacgaact ggaagaatag agagtgttgc tcagtttttc tcagtttttc gccaaatttc
     2161 ataaaaaaat cccaaaaaac cgattgacaa tgcatataag tcgtgataga ctgattgagt
     2221 tgtctcttga gggactggtt aatagagaaa cgaaaaaaag tttcgaaaaa gtgttgacaa
     2281 gaccatcaga agatgataga ataattgagt tgtctcttga gggact
//
LOCUS       DASFRC010000224         2223 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.227, whole genome shotgun sequence.
ACCESSION   DASFRC010000224 DASFRC010000000
VERSION     DASFRC010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2223)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2223)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2223
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.227"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            336..1052
                     /locus_tag="U1087_002140"
                     /pseudo
     CDS             336..1052
                     /locus_tag="U1087_002140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921854.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
     gene            1200..2006
                     /locus_tag="U1087_002141"
                     /pseudo
     CDS             1200..2006
                     /locus_tag="U1087_002141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636218.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
BASE COUNT          777 a          399 c          482 g          565 t
ORIGIN      
        1 attcttagaa aataacaaaa tagataaata ttagataccc tctagaaaaa atttagttta
       61 ggatgttata ctaacgctaa aacaataata tcaatttttg aaaatactag attggaataa
      121 aaatctaatc gccatatttt agaacatgta cttacaagta aagagctttt atgtaagaga
      181 tagtttttcg ctaatcaagt taattttttg agggaatgct ggctgtattt tgaaaaaacg
      241 aacgatgagt agcttaaaaa tgccttagat gggagtgcta acctgtaaat acaggttctt
      301 agtaaattga agtaaataga gtaaaggagc acattatgag caaacaaaaa gttgtgacaa
      361 atctattgct tagtacagct gtactaggtg gttttctaat atgtcacgta tcatctgtaa
      421 gcgcagaaac aggcaatctt caagaaatac ctactgaatc tgctacggtt agctcagaaa
      481 atcaaactgc gaccgcagtc gatggaattt cacctacgga taaccaatta cctacgtcag
      541 aagaaggtga tgaacaggct ccagaagaaa aactagtttc tagcgattct acgagagaag
      601 aaagtgctac gcaggtagcg acggatccgg atgcgccatc tcaatcatta agtgtgtcag
      661 gggcggaaat ttcaacggca gattcaaata ttcaacaagc cgaagagaaa ctgattcaag
      721 aatcgaatta tcatagattt gacactcatc aaggtgaaca gattaggaag gcagtatcta
      781 tagaaaaaat atcggcagat aatgacgaaa ttaagtggaa agtaactttt gatagaaaaa
      841 attggacctt tagtggagag gggagtggct attactttat tcttctaaaa ggcttacaat
      901 taaccaaaat tattgatagc cagtctgaag aggatatttt caataagttc cctaaggatg
      961 tcaatagtga ggcaaattct ggcgggcagc cgtatcgctt ttttagtaga gaaaaaaatg
     1021 ctaataatga tgagcgtagt tttgaaagtc agtggggttg gtctgttgga cgtgtaggag
     1081 gagagctaga aaaatggaag gaagaaagtt ccagcgtcta ttttctacaa gtacagcgag
     1141 attccgttgc taaagaaaaa gcgacatatg aactgacggc acaggtgaca aatcgagaaa
     1201 tgcagacttt cccggtttta gctgtggtga agaattttaa agagcgaata tttttctcca
     1261 gagatgagat tacttctgct gctggtttga gattaaaggt atcggaaagt gctaagccaa
     1321 ataatgaagg gattactatt atcggagatt catctccaga aagcgacagg actcctgaac
     1381 cgcggggaga taggacttcg gatatagttg taccaaaggc agatgttcca aaagttgagc
     1441 aaccaaaacc aaaggaccct gaagttcaac tgcctgctcc taaggctccg gaatctgtgc
     1501 caccaaaagt aatgcctcca gcacccaaag ttccagacgt taagacgcca aaataggcgc
     1561 ctctgccacc aaaaactccg ggcgttgagg ttccgaaagt aacaccaccg acctcgaaag
     1621 ttccagaagt tcaccttcct gctcctaagt ctccagaagt tgaggttccg aaagtaacac
     1681 caccaacctc aaaagttcca gacgttaaga cgccaaaaac tccggaagtt gcgcacccag
     1741 aagttgagaa acccgccgga atccaaccag aaaagggtca acctgaggtt aataaaccca
     1801 atattatcca tccggaggtg cttcaatccg aagttaagaa aacggaatct ggagtttcaa
     1861 tggctccaaa ggtaggaata caaaaagaga ctttaccaaa tacgggtgaa acaagtaata
     1921 ccctagtatg gctaggtggt gctctagctg cccttgcatc aagtttgtat cttttcaaac
     1981 aacacaggca aagagaagag gagtgatttt acgctaatac tatagttttt ggtacaccaa
     2041 taaggcttat ttaccatgga ctaagaaaat ttagaacagt tgtaaataga aaacgttcca
     2101 aaatctgaac tgcaccccaa aagttagagg ttaactctag tttttgaggt gcttttcttg
     2161 taaggtcaag acacaaagac aagattgaaa tttatctctt gcaatgatat gaaggagttg
     2221 gtt
//
LOCUS       DASFRC010000225         2206 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.228, whole genome shotgun sequence.
ACCESSION   DASFRC010000225 DASFRC010000000
VERSION     DASFRC010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2206)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2206)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2206
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.228"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..>2206
                     /locus_tag="U1087_002142"
     CDS             <1..>2206
                     /locus_tag="U1087_002142"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="helicase"
                     /protein_id="HEM4756564.1"
                     /translation="GRRATFEEQKSLALYVGWGGLADVFNEEKTGQWLEARNELTELL
                     SPEEFQAAKESTLTAFYTPPLVIDAIYLGLKNLGFENGNILEPSCGVGNFIGRLPSEM
                     GRSKIYGVELDRISGRIAQELYQKSTIQIQGYEDTSFSNNFFDVAVGNVPFGDFKVSD
                     RDYDREKFLIHDYFFAKSIDKVRSGGVIAFVTSSGTMDKQDSRVRQYLANRCDLLGAI
                     RLPNSTFKGLAGTEVTSDILFLQKRDVIREQDVDWIHLARDENGFTYNKYFVDHPEMV
                     LGKMTEVSGRFGPSLACIPNEENLSVQLTTAVEEIQGEIPNIKLDQQINDGQDILPAL
                     DHVKNFSYTMIDGIPYFREDSVMIRQHMTDKEINRLKNYLAVVESLKEVIQLQKENAS
                     DELIQESQHRLNKAYDTFKVNHDYINSTLNRRNLREDSNYPLVSSIEKLDKGKFAGKG
                     DIFFKRTIAKAKVVEHCESSHEALILSISEKGRVDFDYMTKLTDKPREVLVKELKGEI
                     YLDIPYIYPETKLLPFSEKGMKEMGLTYVPADQYLSGNIREKMAIMDFYIERYQAIEN
                     PDKDVLDNLIELKFQRDKLQGVMPKELTASEISVRLGTTWIPTSDINQFIFDTLQPGY
                     YAKQAINVHFSPFTSEWKIDGKTQDSRNDLANLTYGTSRVNAYRLIEDSLNLRDTRVY
                     DTVYTDGGDKRQVLNKKETMLAGEKQELLKEAFKDWIFNDQRRRHRLEKLYNE"
BASE COUNT          744 a          335 c          481 g          646 t
ORIGIN      
        1 aggtagacgt gctacttttg aagaacagaa atcgcttgcc ttatatgttg gatggggtgg
       61 tctggctgat gtttttaacg aggagaaaac tggacaatgg ttagaagcac gaaatgaact
      121 tacagaattg cttagtccag aagaatttca agcagccaag gaatccacct tgactgcttt
      181 ttatacacca ccattggtca tcgacgctat ttatctggga ttgaagaatc ttggatttga
      241 aaatggtaat atcttggagc cttcttgtgg ggttggaaac ttcatcggtc gcctaccaag
      301 tgaaatgggg cgttcaaaaa tctatggtgt agagttagat agaatcagcg gtaggattgc
      361 acaagaacta tatcaaaaat ccactattca aatacaagga tacgaagata caagcttttc
      421 aaataatttc tttgatgtag cagttggaaa tgttccgttt ggtgatttta aagtttcgga
      481 tagagattat gaccgagaaa aattcttgat acatgattat ttctttgcca agtctatcga
      541 caaggttcgc agtggtggag tgattgcatt tgtgacctct tctggaacca tggacaaaca
      601 agatagtcga gtccgtcagt atctggccaa tcggtgcgat ttattggggg ccattcggct
      661 accaaattca acttttaaag gtttggcagg aactgaagtt accagtgata ttcttttctt
      721 gcagaagcga gatgttattc gagagcaaga tgttgactgg atacatttag caagagatga
      781 gaatggattt acttacaata agtattttgt agatcatcca gagatggtct tgggtaaaat
      841 gacagaagta tctgggagat ttggtccaag tttagcttgt attcctaatg aggaaaattt
      901 gagtgtacaa ttgacaactg ccgttgaaga aattcaaggt gagataccaa atattaaact
      961 agatcaacaa atcaatgatg ggcaagacat acttccagct ttggatcatg ttaagaattt
     1021 ttcttatacc atgatagatg gaattcccta ttttcgtgaa gattcggtga tgattcggca
     1081 acacatgaca gacaaggaaa tcaatagact aaaaaattat ctagcggttg tcgaaagtct
     1141 gaaagaagtc attcaactcc aaaaagaaaa tgctagtgat gagttaattc aagaaagtca
     1201 acataggtta aataaagctt atgatacttt caaagtcaat catgactata ttaactctac
     1261 actaaaccgt aggaatttgc gtgaggatag taactatcca ttagtatcat caattgagaa
     1321 actggataaa ggtaagtttg cagggaaagg ggatattttc tttaaacgga cgattgctaa
     1381 agcaaaagtt gtcgagcatt gtgaatctag tcatgaagct ttgatacttt caatttcaga
     1441 aaagggaaga gttgactttg attatatgac taagttgacc gacaaaccga gagaagttct
     1501 cgtaaaagag ttgaaaggcg agatatatct cgatattccc tacatatatc ctgaaacaaa
     1561 attacttcca ttttcagaga aagggatgaa agaaatggga ttaacgtatg ttccagcaga
     1621 ccaataccta agtggaaata ttcgtgagaa aatggcaatc atggattttt acattgaaag
     1681 gtatcaagca attgaaaatc cagataaaga tgttcttgat aatttaattg aactgaaatt
     1741 tcagcgagat aaacttcagg gagtcatgcc taaagaattg accgcaagtg aaatatcggt
     1801 acgacttggt acaacttgga ttcctacatc agatatcaat cagtttattt ttgatacttt
     1861 acagcctggt tattatgcta aacaagcaat aaatgttcat ttttctcctt ttacatcaga
     1921 gtggaagatt gatggcaaga cccaggatag tcgcaatgac ttagcaaatt tgacttatgg
     1981 gacaagcagg gtaaatgctt atcgacttat tgaagattca ttgaatttgc gtgatactag
     2041 agtgtacgat actgtctata ctgatggtgg tgataagaga caagttctaa acaagaaaga
     2101 aactatgtta gcaggtgaga agcaggaact tctcaaagag gctttcaagg attggatttt
     2161 taatgaccaa aggcgaagac atcgtttaga aaaactctat aatgag
//
LOCUS       DASFRC010000226         2126 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.229, whole genome shotgun sequence.
ACCESSION   DASFRC010000226 DASFRC010000000
VERSION     DASFRC010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2126)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2126)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2126
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.229"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(8..1672)
                     /locus_tag="U1087_002143"
     CDS             complement(8..1672)
                     /locus_tag="U1087_002143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004193336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DAK2 domain-containing protein"
                     /protein_id="HEM4756565.1"
                     /translation="MSKITTSLFQEMVQAASTRLNKQAEYVNSLNVFPVPDGDTGTNM
                     GMTITNGAKEVADKSASTVGEVAQILSKGLLMGARGNSGVITSQLFRGFGQSVKGKIE
                     LDGKDLAQAFQHGVEVAYKAVMKPVEGTILTVSRGAATAALKKAEETDDAVEVMRATL
                     DGANRALKKTPEMLPVLKEVGVVDSGGQGLVYIYEGFLSALTGEYIASEDFEATPAVM
                     SEMINAEHHKSVAGHVATEDITFGYCTEIMVALRQGPTYVKDFDYEEFRNYLNDLGDS
                     LLVVNDDEIVKVHVHTEDPGLVMQAGLQYGSLVKVKVDNMREQHEAQVEKVESFQKPA
                     EQKEYAIIAVAAGEGLTEIFKSQGVDYVISGGQTMNPSTEDFINAIELVNARNVILLP
                     NNKNILMAAQTAAEVAEVAVKVVETKTLPQGFTSLLAFDPSRDLESNFEAMTASLAEV
                     KSGSVTTAVRDTTIDGLEIHENDNLGMVDGKIVVSNPDMMETLVATFDKMLDEDSEIV
                     TIYIGEDGDEELAQTLAKQLEEQFEDVEVEIHQGNQPVYPYLFSVE"
     gene            complement(1675..2040)
                     /locus_tag="U1087_002144"
     CDS             complement(1675..2040)
                     /locus_tag="U1087_002144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018365170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp23/Gls24 family envelope stress response
                     protein"
                     /protein_id="HEM4756566.1"
                     /translation="MTVKINTKDGQIELTDDVIATVVGGATTEIFGVVGMASKSAIKD
                     NFQALLRKENYSKGVVIKTLEDGRIAVDVYTVMSYGVKISEVSRNIQERVKFNLENQL
                     GISVDAVNVFIQNIKVVGE"
BASE COUNT          598 a          527 c          368 g          633 t
ORIGIN      
        1 attttgttta ttctacgctg aaaagatatg gatagactgg ttgatttcct tgatggattt
       61 cgacctcaac atcttcaaat tgttcttcta gctgtttagc aagagtttga gcgagttcct
      121 catcaccatc ttcaccgatg tagatagtca cgatttcgct gtcttcatcc aacattttat
      181 caaaggtagc cacaagtgtc tccatcatat ctggattaga aaccacaatc ttgccatcaa
      241 ccataccaag gttgtcattc tcatggattt caagaccgtc aatggttgta tcgcggaccg
      301 cagttgtcac gctaccactt ttcacctctg cgagagatgc cgtcatcgct tcaaagttgc
      361 tttccaaatc acgacttgga tcaaaagcaa gcaagctagt aaaaccttgt ggtagggtct
      421 tagtttccac aaccttaacc gcaacttctg caacctcagc agccgtctga gcagccatca
      481 agatattttt gttgtttggc aacaagatga cattgcgggc attgaccaat tcaatagcat
      541 tgataaaatc ttctgttgat gggttcatgg tctgaccacc tgaaatcaca tagtcaacgc
      601 cttgtgattt gaagatttct gtcaaacctt ccccagcagc taccgcaata atagcatact
      661 ctttttgttc agccggtttt tggaaacttt ctactttctc aacctgagct tcatgttgct
      721 cacgcatatt gtccactttt accttgacca agctaccata ttgaagaccc gcttgcatga
      781 ccaaacctgg atcttctgta tggacatgga ctttaacgat ctcatcatcg ttgaccacaa
      841 ggagggaatc cccaaggtcg ttaaggtagt tacggaattc ttcataatca aagtccttga
      901 cataagtagg cccctggcga agagctacca tgatttctgt acagtaacca aaggtaatat
      961 cttcagtcgc tacatgacct gcaactgact tgtggtgctc agcattaatc atttcagaca
     1021 taacagcagg tgtcgcctca aaatcttccg aagcaatata ctcacccgtc aaagctgaca
     1081 agaagccttc ataaatgtaa acaagacctt gtccacctga atcgacaact ccaacttcct
     1141 tcaatactgg aagcatctct ggcgttttct taagagcacg attagcacca tcaagagtag
     1201 cacgcatgac ctcaaccgca tcatcagtct cttctgcctt tttcaaagct gcagtggctg
     1261 ccccacgcga aacagtaaga attgtacctt caactggctt cataacggct ttataagcca
     1321 cttctacacc atgttgaaag gcttgcgcca aatccttacc gtccaattca atcttgcctt
     1381 taacagattg cccaaaaccg cggaacaatt gcgacgtaat aacacctgag tttccacgag
     1441 ctcccatcaa caagccctta gaaagaattt gcgcaacttc tccaacagta gaagcagact
     1501 tatctgctac ttctttagca ccgttggtaa tagtcatccc catgttggta ccagtatccc
     1561 catctggaac tgggaaaaca ttgagtgagt tcacatattc ggcttgttta ttcagacgag
     1621 ttgatgctgc ctgcaccatt tcttgaaata aactagttgt aattttagac acaattattc
     1681 tcctacgact ttgatatttt ggataaagac attgacggca tctacagaga tacctagttg
     1741 attttccaag ttgaacttaa cgcgttcttg gatgttgcga gatacttcac tgatttttac
     1801 accgtagctc atcacagtat aaacatcgac tgcaatgcga ccatcttcca aggtcttaat
     1861 cacaacacct ttagaataat tttcttttct caaaagtgct tgaaaattat ccttgatcgc
     1921 agacttacta gccatcccaa caacaccgaa aatctcagtc gtagcaccgc caacaactgt
     1981 ggcaatcacg tcatcagtca attcgatttg gccgtcttta gtattgattt taacagtcat
     2041 aattcgttac ctcaaatagt tttatcactc cattttacca cattttctgc tttctgtaaa
     2101 aaacaagctt gttacatcgg atttta
//
LOCUS       DASFRC010000227         2067 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.230, whole genome shotgun sequence.
ACCESSION   DASFRC010000227 DASFRC010000000
VERSION     DASFRC010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2067)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2067)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2067
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.230"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..543)
                     /locus_tag="U1087_002145"
     CDS             complement(<1..543)
                     /locus_tag="U1087_002145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM4756567.1"
                     /translation="MTESAKTKLQQALILLLDEEDFERISVSKICKEAGVHRSTFYHY
                     YDNQFDLLEDAYQYLTQLFLAEFQSYPANSLPIETDLTGDAYLISYLQFVKDHQKIYQ
                     IYLRHELDFHHKERFEHLVELIFTPRFHAQGIQNPVQIAYVSSFFLAGITQVVSKWVR
                     NGCAESIEEMADIIQICISRK"
     gene            921..1550
                     /locus_tag="U1087_002146"
     CDS             921..1550
                     /locus_tag="U1087_002146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019335829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEM4756568.1"
                     /translation="MKIAVVAANGKAGSLIVKEAVARGFEVTAIVRGENKTVAQQVLQ
                     KDVFDLTADDVIGFDAVVDAVGAWTADTVHMVPDAAKHLAAILKDSQTRLLVVGGAAS
                     LYVNPEHTLTVADVTEFPAEVLPVLNAHKEALEALRQVDDVNWTYVSPAGDFQADGER
                     TGRYILGGEELVLNSKGESVISYADYAIGMIDEIASGNHIKARISLVSE"
     gene            1560..2009
                     /locus_tag="U1087_002147"
     CDS             1560..2009
                     /locus_tag="U1087_002147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEM4756569.1"
                     /translation="MQISNKFTIAIHALAFIHLFQDQQRVTSKVLANSIQANPVIIRS
                     VLSGLKDAGIVDAKQGSGGFRLAKPLDDISLYDIFVTVDNIDKKGLFNFHENPHPDCI
                     VGGNIHAAVDDKLVQVQTAMEKELKTMYMSDVLVDLEKAIEEKAKRT"
BASE COUNT          616 a          378 c          477 g          596 t
ORIGIN      
        1 ctttctagag atacagattt ggataatgtc agccatctct tcaatcgatt cagcacagcc
       61 atttctcacc cacttggata cgacttgtgt tatgcctgcc agaaagaagc tagatacata
      121 ggcaatttgt actggatttt ggatcccttg agcatggaag cgaggagtaa aaatcaattc
      181 taccaagtgt tcaaagcgtt ctttgtggtg aaaatctaat tcgtgacgga gataaatctg
      241 atagattttc tggtggtctt ttacaaattg taggtaggaa atgaggtagg catcgcctgt
      301 tagatcggtt tcaattggta gactattagc gggataagat tggaattcag ctaagaaaag
      361 ttgggtaagg tattgataag catcctctaa caagtcaaat tgattgtcat aataatggta
      421 aaaagtagag cgatgtaccc cagcctcctt gcaaattttg ctgacggaaa tacgttcaaa
      481 atcttcctca tctaagagaa gaatcaatgc ttgttgtagt tttgttttgg ctgattcagt
      541 catagtgtcc gctcccttgg tttcattact tactagttta cctcaacatt ctgtttgaaa
      601 caagtcgctt ttactccttc gtttcattta tgacaattga tacaactgac aagtttctcc
      661 aaatccttaa cttcttcttg gatgaattta actgactagc aaacggcctg tcagccttga
      721 aaccgaggag gaagtagaat agactagaaa agatttgagg ctccatctca gatctttttt
      781 ctgcgataaa tgaacctgtc aacaattttc aaaaaaagtt gtaacaaaac tgttgacaac
      841 tattggggat taggatatac tagtgtacgc aaagttgtaa caaaacaatt tacaacaaaa
      901 acatttcgga ggaaaagaaa atgaaaatag cagtagtagc agcgaacggt aaagcaggta
      961 gcttgattgt gaaagaagcg gtagcacgtg gttttgaagt aacggccatc gttcgtggtg
     1021 aaaataagac agtcgcacag caggttcttc aaaaggatgt ttttgacctg acagccgatg
     1081 atgtgattgg ttttgatgcg gtagtggatg cagtaggtgc ctggacagca gacactgtgc
     1141 atatggttcc tgatgcagcc aaacatttgg cggctatcct aaaagattca caaacacgct
     1201 tgcttgtggt tggtggagca gcaagcctct atgttaatcc agaacatacc ttgactgtgg
     1261 cagatgtgac agagtttcca gcggaagtat tgcctgtgtt aaatgctcac aaggaagcac
     1321 ttgaggccct tcgtcaagta gatgatgtca actggaccta tgtaagtccg gcaggtgatt
     1381 tccaagcaga cggcgaacgg acaggtcgct atattcttgg cggtgaagag ttggtcttga
     1441 acagcaaggg agaaagcgtt atttcctatg cagattatgc gattggtatg attgatgaga
     1501 ttgcatcagg taatcatatc aaagcacgta ttagccttgt cagtgagtag aagagttcta
     1561 tgcagatctc aaataaattt accattgcca ttcatgcctt ggcttttatc catctctttc
     1621 aagatcagca gcgtgttacc agcaaggttt tggcgaacag cattcaagcc aatcctgtta
     1681 tcattcgctc ggttctatct ggtttgaagg atgcgggaat tgtagacgct aagcagggta
     1741 gcggcggttt tcgtttagca aagccacttg atgacattag cctttatgac atctttgtta
     1801 cggttgacaa tatcgataag aaaggcttgt ttaattttca tgaaaatccc catcccgact
     1861 gtatcgtagg ggggaatatc catgctgctg tggacgacaa actcgtccaa gtccagacag
     1921 ctatggagaa agaattgaaa actatgtata tgtctgatgt cctggttgac ctagaaaaag
     1981 ccattgaaga aaaagcgaaa aggacttaaa tgggagtggg aaagaactcg accattcatc
     2041 gaagagttcg tcaacaagtc tttattt
//
LOCUS       DASFRC010000228         2049 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.231, whole genome shotgun sequence.
ACCESSION   DASFRC010000228 DASFRC010000000
VERSION     DASFRC010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2049)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2049)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2049
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.231"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            209..580
                     /locus_tag="U1087_002148"
     CDS             209..580
                     /locus_tag="U1087_002148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756570.1"
                     /translation="MKKLMYTLLVLAYVTVAYLSVYVLPHYYFGAIIGAAGASLGASF
                     KQFKEVKAFPDKALLAYFKRDKKKTSSLLLLLLGIFLFVSLVLEFNWQYGLAFVVAIS
                     YAMLWNVLHIQFLRKYYFKNA"
     gene            complement(602..1939)
                     /locus_tag="U1087_002149"
     CDS             complement(602..1939)
                     /locus_tag="U1087_002149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM4756571.1"
                     /translation="MNDLTKGKPIAVILQFAIPLLIGSFFQLAYNFADSMIVGHTLGK
                     DSFASVGSTASLIFLIIGFAQGVTNGLTIISAQRFGAGDLEGLKKSFVHGLFYASLIS
                     LLLTVSALAFLKPILVLMQTPVSIIDHSHAFLTAMFGGLTFTIFYNFLSSALRSLGNS
                     KTPLLALVIACFINIGLDFFFILVMNWGVFGAGFATILAQACSVLFLIFYIIHKVPHY
                     HIGLADLKLDRGNLKKHAQLAFPMGFQASIIAIGAMTLQFMVNQLGTDAIAAQAIALR
                     TDQLAMLPMVNLGLAIATFTAQNYGAKLYDRIREGVRYSLLLSITWAIVFAVILILGN
                     RFFSGLFLPNASQTVLDLALVYYIINGSCYWIVASLFILRSFIQGLGKGFIPTLAGFG
                     ELIFRAAVAIIGMQYFGFYGTAAANPAAWIGSIIVLIPSSIIFMKKLKAGQSI"
BASE COUNT          649 a          372 c          488 g          540 t
ORIGIN      
        1 atagcaaagc cttgaaaaaa tctctggctc aggctaaaaa aatgctgccc aacagcccac
       61 ttttggttga tgagcaggat tattatagca agctcttgac agaagttgag ttagaaagtc
      121 aattgccata gtagattatt ttgacttgtg tttgcgataa aatttatgtt aaaataggga
      181 cggagacaaa tagataggga ggttggtcat gaaaaaactg atgtatacct tgttggtgct
      241 tgcctatgtt acggtcgctt atttgtcggt ctatgtcctt ccacactatt attttggtgc
      301 aattatagga gcggcaggag caagtcttgg tgctagtttc aaacagttca aggaagtgaa
      361 agcttttcct gataaagcct tattggctta ttttaagagg gataagaaaa agactagtag
      421 tttattattg ctccttctgg gaatattcct ttttgttagc cttgtgttgg aatttaattg
      481 gcaatatggc ttagcttttg tagtggcgat cagctatgct atgctttgga atgtccttca
      541 tatccaattc ttacgaaaat attattttaa aaacgcatga gagtttcatg cgttttcttt
      601 tctaaatact ttgtccagct tttaattttt tcataaagat gatggaactt ggaatcagga
      661 cgatgatgct tccgatccag gcggcggggt tagcggcggc ggttccataa aaaccgaaat
      721 actgcatgcc gatgatggcg actgctgctc ggaaaatcaa ttctccaaag cctgctagtg
      781 ttgggataaa gcccttgcca agtccctgaa taaagctacg aagaataaag agggaagcaa
      841 caatccagta acaagagccg ttaatgatgt agtaaacaag agccaagtcc agcactgttt
      901 ggctggcatt tggcagaaag agaccagaga agaagcgatt gcccaagatg agaatgaccg
      961 caaatacaat ggcccaagta atgctgagga gtaatgagta gcgcactcct tctcgaatac
     1021 ggtcatagag cttggcaccg tagttctgag cagtaaaggt tgcgatagcc aagcccagat
     1081 tgaccatggg cagcatagcc aactggtcag tacgaagggc aatggcctgg gcggcgatgg
     1141 cgtctgttcc tagttggttg accataaact gcaaggtcat ggctccgatg gcgataatac
     1201 tggcttgaaa tcccattgga aaagcaagct gggcatgttt cttgagatta cctctatcca
     1261 attttaaatc agctagtccg atatgatagt gaggtacctt gtggataatg taaaaaataa
     1321 gaaagaggac cgaacaggct tgagcaagga tagttgcaaa gccagctccg aaaacgcccc
     1381 agttcataac taagataaag aaaaaatcca gaccgatatt gataaaacaa gcgataacta
     1441 gagccagtag aggtgtttta gagtttccga gactgcgtag ggctgaagaa agaaaattat
     1501 agaaaatagt aaaggtcaat cctccaaaca tggccgttag aaaggcatgg gagtggtcga
     1561 tgatactcac aggcgtttgc attaagacca agataggttt caaaaaagct aaggctgaga
     1621 ctgttagtaa aaggctgatg agggaagcgt agaagagtcc gtggacaaaa gattttttaa
     1681 gcccctctaa gtcgccagct ccaaagcgtt gggcagaaat aatggttaat ccattggtaa
     1741 caccttgggc aaaaccgatg attaaaaaaa tcaggctggc tgtcgaaccg acactggcaa
     1801 aggaatcctt tcccaaagta tgccccacaa tcatggaatc agcaaaatta taggccagtt
     1861 gaaaaaaaga gccaatcaat aagggaatag cgaattgtaa gatgaccgca atcggctttc
     1921 ctttggttaa atcattcata acgtctcctt ttgacagatg ataagcccac tagataaatg
     1981 atagtctagt aggctttcta gggataaaat atttctcctg aaaacggagt atagggcgta
     2041 aatttgtta
//
LOCUS       DASFRC010000229         2048 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.232, whole genome shotgun sequence.
ACCESSION   DASFRC010000229 DASFRC010000000
VERSION     DASFRC010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2048)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2048)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2048
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.232"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..1315)
                     /locus_tag="U1087_002150"
     CDS             complement(<1..1315)
                     /locus_tag="U1087_002150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEM4756572.1"
                     /translation="MKKVLIHTLLKSYSLLVIGIVIFFASILSYISWYQYDTNRIRIQ
                     QEVADGLKEELDYYQGRVGNYLADYITDRDRLDSLYHYFQLSPSQYQVWLLSHPHLMV
                     KRISLQDSVRTLYLYYPFVEGVDIAPMDANTVFVSTSDLKSGKKVTAENYKAPQHSIS
                     MTLFSPSTTEGIATIYVTIDADLLEQYIQRKTDLPMTVRVQDSLDREFYSLRPDVASP
                     PLSYRMSGDLQIAVGVDQQYAIEKVGSLVGIIFLGSSCLVALLLLVLRRVFKRYEVQV
                     LDIVDTIQQIRGEDRHLRLQTDNKEQEMYLISSEINQMLDAMDQSIQDIYRLQLAQKD
                     ANMRALQAQINPHFLYNTLEFFRMYAVSKQMDELGDMIYEFSSLLRSSVTQAKMTTVA
                     EELSFCEKHSYICQIRYPRSIAYAYQMDPGCERVEIPRFVIQPLVE"
     gene            complement(1312..1917)
                     /locus_tag="U1087_002151"
     CDS             complement(1312..1917)
                     /locus_tag="U1087_002151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF624 domain-containing protein"
                     /protein_id="HEM4756573.1"
                     /translation="MLGWLDRLFTLLFFLMKLSAIYLVLLLLGGVVLGISPANGTILY
                     LYDNYHMDASKYNFREAFGYFKEHFIRLNLGLGLVLLLIGLLFSGIWLLIQLPQTWWM
                     PAVLITNAFGLFYVFALYALFLKLQVHFEFSLKTGLQLAAVSLFLDWKALVKFLLGSL
                     VCGFLLFKLPLILFFFLPVLWLLFLYDAFDPVYKKVDKDYL"
BASE COUNT          681 a          422 c          409 g          536 t
ORIGIN      
        1 tttctaccag aggctggatt acaaaacgag gaatttcaac cctttcgcac ccaggatcca
       61 tttgataggc ataggcaatg gaacggggat agcggatttg acaaatgtag ctatgttttt
      121 cgcaaaatga aagttcttct gccaccgttg tcatttttgc ctgtgtcaca ctactgcgaa
      181 gcaagcttga aaattcataa atcatatccc ctagctcatc catctgcttg ctgactgcat
      241 acatacggaa aaattccaag gtattgtaga gaaaatgggg gttaatctgg gcttgtaagg
      301 ctcgcatatt ggcatctttc tgagctaact gcaagcgata gatgtcttga atactctggt
      361 ccatagcatc cagcatctga ttgatttctg atgaaataag atacatttcc tgctctttat
      421 tgtccgtctg tagacgaaga tgcctgtctt cgccacgaat ctgttgaatg gtatcaacaa
      481 tgtccagtac ttgaacttca tatcgtttaa acacccttct caggaccagt agtaaaagag
      541 caacgagaca actacttcct agaaaaatga ttccgactag gctgccaact ttttcaatag
      601 catactgctg gtcaactcca actgcaattt gcaaatcccc actcattcga taggagagcg
      661 gaggtgaggc aacatctggt cgcagactat aaaattcccg atccagagaa tcttgaactc
      721 taacggtcat ggggagatcc gtcttacgtt gaatatattg ttcgagcaaa tccgcatcga
      781 tggtgacata gatggtcgca ataccttctg ttgtcgatgg agaaaataag gtcatcgaaa
      841 tactatgttg cggagccttg taattttcgg ccgtgacctt tttaccagac tttaagtcag
      901 aggtagaaac aaagacagta tttgcatcca tcggagcaat atcgactcct tctacgaagg
      961 gataatagag atagagagtg cgaacagaat cctgcaagga aatccgtttg accatcaggt
     1021 gtgggtgact cagtaaccag acctggtatt gagaaggaga caattgaaaa tagtgataaa
     1081 gactgtctag acgatccctg tccgtaatgt agtctgctag ataattccca acccgtcctt
     1141 gataataatc caactcctct tttagaccat ctgctacttc ctgttgaatg cggatgcgat
     1201 tggtatcata ctgataccag ctgatgtagg aaagaatact ggcaaagaaa atgacaatcc
     1261 caatcactaa taaagaataa cttttcaaaa gagtatgaat taaaactttt ttcataagta
     1321 atccttgtca actttcttat aaactggatc aaaggcatca tagagaaaca agagccatag
     1381 gaccggtagg aagaagaata aaatcaaggg aagtttgaat agcaagaacc cacagacgag
     1441 actgcctaac aaaaatttga ccagggcttt ccaatcaaga aaaagcgaga cagccgccaa
     1501 ctgtaagcct gtttttagac taaattcaaa atgtacttga agttttaaaa agagcgcata
     1561 gagtgcaaaa acatagaaaa gaccaaaagc atttgtaata agaactgctg gcatccacca
     1621 ggtctggggc aattgaatca agagccaaat gccgctaaat aaaagaccaa tcaataagag
     1681 gacaagacca agtccaaggt taagccgaat aaaatgctct ttaaaatagc caaacgcctc
     1741 tcgaaaatta tacttagatg catccatatg atagttatcg tagaggtaaa gtatcgttcc
     1801 atttgctggt gaaatgccca gcactacgcc tcctagcaat agaagaacca aatagatggc
     1861 actcaatttc atgaggaaga aaagaagagt aaaaagcctg tctaaccacc ctaacattgt
     1921 atattcctcc ttttttatct attttatcaa aaaatcggtg ctttttgtat atattaacat
     1981 aaaacaaatg caaaagaggc tgagcaaaaa gcccagcgcc acttcttaga gttcgtgtcg
     2041 acatctca
//
LOCUS       DASFRC010000230         1963 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.233, whole genome shotgun sequence.
ACCESSION   DASFRC010000230 DASFRC010000000
VERSION     DASFRC010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1963)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1963)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1963
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.233"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(138..1631)
                     /gene="sly"
                     /locus_tag="U1087_002152"
     CDS             complement(138..1631)
                     /gene="sly"
                     /locus_tag="U1087_002152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_095889394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cholesterol-dependent cytolysin suilysin"
                     /protein_id="HEM4756574.1"
                     /translation="MRKSSHLILSSIVSLALVGVTPLSVLADSKQDINQYFQSLTYEP
                     QEILTNEGEYIDNPPATTGMLENGRFVVLRREKKNITNNSADIAVIDAKAANIYPGAL
                     LRADQNLLDNNPTLISIARGDLTLSLNLPGLANGDSHTVVNSPTRSTVRTGVNNLLSK
                     WNNTYAGEYGNTQAELQYDETMAYSMSQLKTKFGTSFEKIAVPLDINFDAVNSGEKQV
                     QIVNFKQIYYTVSVDEPESPSKLFAEGTTVEDLKRNGITDEVPPVYVSSVSYGRSMFI
                     KLETSSRSTQVQAAFKAAIKGVDISGNAEYQDILKNTSFSAYIFGGDAGSAATVVSGN
                     IETLKKIIEEGARYGKLNPGVPISYSTNFVKDNRPAQILSNSEYIETTSTVHNSSALT
                     LDHSGAYVAKYNITWEEVSYNEAGEEVWEPKAWDKNGVNLTSHWSETIQIPGNARNLH
                     VNIQECTGLAWEWWRTVYDKDLPLVGQRKITIWGTTLYPQYADEVIE"
BASE COUNT          568 a          405 c          323 g          667 t
ORIGIN      
        1 tttaggaaaa tataaaagat tctacccaaa atttgaatag aatccttatt ttaataccat
       61 tttcttgtga taagtttctg acgaatagtg tttagctcct agcctctgtg gctaagagag
      121 tataatacat tgccagatta ctctatcacc tcatccgcat actgtgggta taacgttgtt
      181 ccccagatgg ttattttacg ttgaccaaca agtggtaaat ctttgtcata aactgttctc
      241 caccactccc atgctaatcc tgtacattct tgaatattga catgaagatt gcgagcattt
      301 cctggaattt gaatggtttc actccagtgt gaggtcagat ttacaccatt cttatcccaa
      361 gcttttggtt cccaaacttc ttctccagct tcattgtaag atacttcttc ccaagtaatg
      421 ttgtatttcg caacataagc acctgaatga tccaatgtca atgcactgct attatggact
      481 gttgaagttg tttctatgta ctctgaattg ctcaaaatct gagcaggtct attgtctttg
      541 acaaagttgg ttgaatacga aatcggaaca cctggattga gttttccgta tcttgcacct
      601 tcttcaataa tcttcttcag tgtttcaata tttccgctca caacagtagc tgcgctacct
      661 gcatccccac caaaaatata agcagagaat gaagtatttt tcagaatgtc ttgatactca
      721 gcattgccac taatatcaac gcctttgatg gctgctttaa atgcggcttg aacttgggta
      781 ctcctactgc tagtttctaa cttgatgaac atagagcgtc cataagaaac gctggaaaca
      841 taaacaggag gtacctcatc tgttatccca tttcgtttca aatcttctac agttgtccct
      901 tctgcaaaaa gcttgcttgg agattctggt tcatcaacac taactgtata ataaatttgt
      961 ttaaagttaa caatctgaac ctgtttttca cccgaattca cggcatcaaa attgatatct
     1021 aatggtactg caattttttc aaaagaggtt ccgaacttcg tttttaattg tgacatactg
     1081 tatgccattg tttcatcata ttgaagctct gcttgggtat tgccatactc tccagcatac
     1141 gtattattcc atttagacag aaggttattc acccctgttc gaacagtact tcttgttgga
     1201 gaatttacaa cagtgtggct atccccattg gccaaaccag gtaaattcaa actaagcgtc
     1261 agatctcccc gcgcaatact gataagcgtt ggattattat ccagaagatt ttggtcagca
     1321 cgcaataaag cacctggata aatatttgca gccttagcat caataacagc aatatctgca
     1381 ctattgttcg taatattttt cttttctctg cgaagtacca caaaacgtcc gttttctaac
     1441 ataccagttg ttgctggcgg attatcaatg tattctccct catttgtaag aatctcttgt
     1501 ggctcgtaag tcaagctttg aaaatactga ttaatatctt gtttggaatc tgcaagaaca
     1561 ctcaatggtg tgacccctac gagtgccaaa ctgactattg agcttaaaat caagtgcgaa
     1621 ctttttctca taagttttat cctttcatgt tttcactaat gaaatgaata gacataaaaa
     1681 atggtattaa aaaaacaaac gtttgcgagt tcattctgca cctttttaga taagttgtca
     1741 agactccttg agatgaaaaa cagacaaaaa acagattacg cccctctatt tgttgttttt
     1801 ccaacaattt ccggaacatt tctgtaaaca acctattcat tttctgtttt ttctgaattt
     1861 ctgtcagttt tttatacaca ttatcactta taaatatttg caatgataac tagatattat
     1921 agtcgtttag ttcgctttta gtacaaggca acgagctgca ggt
//
LOCUS       DASFRC010000231         1767 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.234, whole genome shotgun sequence.
ACCESSION   DASFRC010000231 DASFRC010000000
VERSION     DASFRC010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1767)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1767)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1767
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.234"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(70..1557)
                     /locus_tag="U1087_002153"
     CDS             complement(70..1557)
                     /locus_tag="U1087_002153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1846 domain-containing protein"
                     /protein_id="HEM4756575.1"
                     /translation="MKKIAFDSTKYLNLQRDHILERIAQFEGKLYMEFGGKMLEDFHA
                     ARVLPGYEPDNKIKLLQELKDQVEIVIAINASNIEHSKARGDLGISYDQEVFRLIDTF
                     NDIDIYVGSVVITQYRNQPAADAFRKQLEKHGIKSYLHYPIKGYPSDIDHIISPEGMG
                     KNDYIETSRNLVVVTAPGPGSGKLATCISQLYHDQLHGVTSGYAKFETFPVWNLPLHH
                     PVNLAYEAATADLDDLNMIDPFHLQTYGKTAVNYNRDIEVFPVLNRTFERILNKSPYA
                     SPTDMGVNMVGYSIVDEEAAIEASKQEIIRRYYQTLVDFKAERVSEQAVKKIELLMNE
                     VGVTPADRKVVIAAREKAELTTSPALAIQLPTGEIVTGKTSDLLKPTATVLLNAIKQI
                     ANIDDETLLIEPNYIRPIQELKADYLDKTNTRLDASEILNALAITAQNSPLAARAMKE
                     LGQLNGSEAHSTVILSDEDKSVLRKLGINLTFDPIYQHNKFYQKN"
BASE COUNT          467 a          335 c          428 g          537 t
ORIGIN      
        1 gcagggaatt gaatccttgc ttttttactg ttcacaaaaa gacttgtcgg agcaagtctt
       61 tttgtgtgct tagtttttct gataaaactt attgtgttgg tagatagggt caaaggtaag
      121 attgatgcct aatttacgaa ggacactctt gtcttcatcg gataggataa cagtcgaatg
      181 agcttcgcta ccatttaatt ggcctaattc tttcatggca cgtgcagcaa gagggctatt
      241 ttgtgcagtg atggcaaggg cgttaaggat ttcgctggcg tccaaacgtg tattggtctt
      301 atccagataa tctgccttca attcttgaat tggacggatg tagtttggtt cgatgagaag
      361 tgtttcatca tcgatgttag caatttgctt gatggcattg agaaggacag ttgcagttgg
      421 cttgaggagg tcggatgtct tacctgttac aatctctcca gttggcaact gaatagcaag
      481 ggcagggcta gttgtcagct ctgctttttc gcgcgcagcg ataacaacct tacgatctgc
      541 tggtgtcaca ccgacttcat tcatgaggag ttcaatcttt ttaactgctt gctcgctcac
      601 ccgctctgcc ttgaaatcaa ccaaggtctg gtagtagcgg cggatgattt cttgcttgga
      661 tgcttcgatc gcagcctctt cgtccacgat ggaatagccc accatgttaa cgcccatgtc
      721 tgtcggtgag gcgtatggtg atttgttcaa aatacgttca aaggtacggt tgaggacagg
      781 gaagacctcg atgtcacggt tgtagttgac cgcagttttg ccgtaagttt gcaggtggaa
      841 ggggtcgatc atgttgaggt cgtccaggtc ggcagttgct gcttcatagg ccaagttaac
      901 gggatggtgg agtggtaagt tccacactgg gaaggtttca aacttggcat agcctgatgt
      961 tacgccatgc agttggtcgt ggtaaagttg ggagatacaa gtcgccaatt tacctgaacc
     1021 aggtccaggt gcggtgacaa cgacgagatt gcgactagtt tcaatgtagt catttttgcc
     1081 cataccttct ggtgaaatga tgtggtcgat atcagaagga taacccttga ttgggtagtg
     1141 gagataggac ttgataccat gtttttccaa ctgtttgcgg aaggcgtctg cggctggttg
     1201 gttgcggtat tgggtaatga cgacagaacc aacataaata tcaatatcat tgaaggtgtc
     1261 aatcaaacgg aagacttctt ggtcataaga aatacccaag tcaccacgtg ccttagaatg
     1321 ttcgatgttg ctggcattga tggcgatgac gatttctact tggtctttta actcttggag
     1381 gagtttgatt ttgttatctg gttcatagcc aggtaaaaca cgggctgcgt ggaaatcttc
     1441 caacattttt ccaccaaatt ccatatagag cttgccttca aattgggcaa tacgctctaa
     1501 aatatggtca cgttgcaaat tcaaatattt agttgaatca aatgcgattt tcttcatcaa
     1561 ataagtcctc caaatgtgta attttctctg ggaaaaacaa aaatagctcc ctaaaactag
     1621 ggagcctttt ctccgacctc tcaaaagagg tgcccgaaca atactataac aaactgtgct
     1681 aatcttgtca agaaaaagtc ggatagaaaa aattaaacaa gtgtttaaaa aatatttaat
     1741 ttttataaaa ttaaatattg actttat
//
LOCUS       DASFRC010000232         1708 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.235, whole genome shotgun sequence.
ACCESSION   DASFRC010000232 DASFRC010000000
VERSION     DASFRC010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1708)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1708)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1708
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.235"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(3..1580)
                     /locus_tag="U1087_002154"
     CDS             complement(3..1580)
                     /locus_tag="U1087_002154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4756576.1"
                     /translation="MKKRNFWLTLTCIFAVALLNVGFLYQYRYIIDAIAAGDRQAFVS
                     YFVLMGLTILVMLVFEYIRQIANVSYLNQVGFQLQATFLGKIFDLPFRQFVDQGAGAY
                     ISQLNNDLETVKEDYYDAFFTIFQGACTFGIASLALLSLDGLTAIFLILISFLPVVIP
                     YLFKKRRRLNQEAISDSQQVYNTRVSDVFLSYLQVKNSHQRQQVLDGLNDRYQAVNDK
                     VNQATRTTVTMRLLVGFVFYLTTLSIIFIGGFQVFSGALTIGGLTAILTISEQLVDPI
                     NSIAAAFLDRHAVKKLKQEFELSTFGQETKGQELASAFQSIQLVKASYAVGEKQVFED
                     LTVAFERGKKYLILGESGSGKSSLALILTKNSQLQAGDIYVDKTSLSDLSYQAIQDKI
                     AYLPQEGSLFHDTVLYNLTMGREIPEDRLMFLIKTMNLDSRFPSYASLSEEISDDSGL
                     SGGQKQRLLLIRALLQDKDILLLDESLSALDQETYAVIENYLTSLADKTLIHISHRMS
                     EEVLSRYDGVVRIGESN"
BASE COUNT          539 a          395 c          332 g          442 t
ORIGIN      
        1 tattaattgc tctccccaat ccgtaccacc ccatcataac ggctaaggac ctcctcggac
       61 atgcggtggg aaatatgaat gagcgtctta tcagctagtg aggtaaggta attttcaatc
      121 actgcatagg tttcctgatc caaggcagac agactttcat ccagcaacaa gatatcctta
      181 tcttgcagca aggcacggat caagagcagg cgttgctttt gtccgccaga cagtccgcta
      241 tcatcactaa tttcctcgct caaagaagca taacttggga aacgactgtc aaggttcatg
      301 gtcttaatga gaaacatcag cctatcttct ggaatctccc gtcccatggt caagttgtat
      361 agaaccgtat catggaaaag ggatccctct tgtggcagat aggcaatctt gtcttgaatg
      421 gcttggtagg ataagtctga aagagaggtt ttatcaacgt aaatatcccc tgcttgcagt
      481 tggctattct tggtcaaaat aagagccaag gaagatttgc cagaaccact ttccccaaga
      541 attaaatact tcttgccacg ctcaaacgct acggtcaggt cttcaaagac ctgtttttca
      601 ccgacagcat aactagcctt gaccagttga atactctgga aagctgaagc tagttcctgt
      661 cccttcgttt cttgaccaaa agtagatagc tcaaactctt gctttaattt cttaacggca
      721 tgcctgtcca aaaaggctgc cgcaatgcta ttaatgggat ccaccaactg ctctgaaatg
      781 gtcagaatag ctgtcaagcc accgatggtc aaggcaccag aaaagacttg aaaaccaccg
      841 ataaagataa tcgaaagagt ggtcagataa aagacaaaac cgactaagag ccgcatggtt
      901 actgtcgttc gagtggcctg attgaccttg tcattgactg cttgatagcg atcgttcaga
      961 ccatctaaaa cttgctgtct ttggtggcta tttttcactt gcaaataact cagaaagaca
     1021 tctgaaactc ttgtattata gacctgctga ctgtccgaaa tcgcttcttg attgagcctt
     1081 ctccgctttt taaacaaata gggaatcaca accggcaaga atgagatcag aatcaagaaa
     1141 atagcggtca gaccatccaa gctaagcaag gccaaactgg caatgccaaa ggtacaagca
     1201 ccttgaaaaa tcgtaaagaa agcgtcgtag tagtcttctt tcaccgtctc caaatcatta
     1261 ttgagctggg aaatataggc ccctgccccc tggtcaacaa actgcctaaa aggtaaatca
     1321 aaaattttcc caagaaaggt cgcctgcaat tggaaaccta cttgattgag atagctgaca
     1381 ttggcaatct gacgaatgta ttcaaaaacc agcatgacaa ggatagttag ccccatcagc
     1441 acaaaatagg acacaaaggc ctgtctatct ccagctgcaa tagcatcaat aatatagcga
     1501 tattggtaca gaaagccaac attgagcagg gctactgcaa aaatacaagt taaggttagc
     1561 caaaaattcc tctttttcat ttctcctcca ctgtttgata gatttctaag caaagcaata
     1621 aaaaaatctg cattaaacac ctttattata ccactccttc ccatatttgt gtccattttc
     1681 acataaagaa aaagaagcta ggcataaa
//
LOCUS       DASFRC010000233         1700 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.236, whole genome shotgun sequence.
ACCESSION   DASFRC010000233 DASFRC010000000
VERSION     DASFRC010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1700)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1700)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.236"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(13..711)
                     /locus_tag="U1087_002155"
     CDS             complement(13..711)
                     /locus_tag="U1087_002155"
                     /inference="COORDINATES: protein motif:HMM:NF021206.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HEM4756577.1"
                     /translation="MRRNYSNYLNDFCNTYGPSGAQVARMVGMAEETIQAIRRGERKP
                     QQATKDKLNRFILNYKKENQPMTPITSQGTQTDIVGIDSRTVAEWTGKQHKELMRDIR
                     QYTEYLKSADLRCTDFWQETTYTASNGKENPCYMITKKGCEFIQHKMTGQKGAVFTAK
                     YINYFWEQGQQLQEATQILLDLSDQPTQPAIELNSDMAYIKNRLSELHSMTTMADIKV
                     GLAKTYRIAELMED"
     gene            complement(726..923)
                     /locus_tag="U1087_002156"
     CDS             complement(726..923)
                     /locus_tag="U1087_002156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017644139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM4756578.1"
                     /translation="MKNNMRVLLAKQRKKVSDVHKATGISKSTLIALYYERTKKPDIE
                     TLQKVANYLGVTIDELLTPEE"
     gene            1086..1670
                     /locus_tag="U1087_002157"
     CDS             1086..1670
                     /locus_tag="U1087_002157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM4756579.1"
                     /translation="MLRNNLAKLMIDRGISATQLFNDTGIARSTISKISNNNTDKISL
                     QTIDKICNYLEVTPEDFFDFWAYEVKIQCGFVNYDSLAEVRKEWEPIPDFNEPAFLLI
                     EFTRGKNTKKILEYKFNYCEEYEPGIPYNNGYLDSIILESPETETSIFDNMPIQFQNE
                     LIEEVKKALSETFDVLSFSPTLRDLDLFTLSGVK"
BASE COUNT          496 a          305 c          301 g          598 t
ORIGIN      
        1 gcttgctcct ttctaatctt ccatcagttc ggcgattctg taagttttcg ctaggcctac
       61 tttaatatct gccatggtgg tcatactatg cagctctgaa agtcggttct tgatgtatgc
      121 catgtcagaa ttcaactcga tagctggctg ggttggttgg tctgataagt ctagtaaaat
      181 ctgtgtagct tcttgcaact gttggccctg ctcccagaaa taattgatat actttgctgt
      241 aaaaactgcg cctttttgac ctgtcatttt gtgctggata aactcacaac cttttttagt
      301 gatcatatag caaggatttt ctttgccatt gcttgcggtg taagtcgttt cttgccaaaa
      361 atcagtacag cgcaaatctg cgctcttcaa atactctgtg tattgtcgga tatcacgcat
      421 caattcttta tgttgcttac ctgtccattc tgcaactgtt cggctgtcaa ttcccacaat
      481 gtccgtttgg gttccctgtg atgtgattgg tgtcattggt tggttctcct ttttgtaatt
      541 taagataaag cggttcagtt tgtccttagt agcctgttgg ggttttcgct ctcctcgcct
      601 aatagcttga atagtttcct cagccattcc aaccattcgg gcaacctgtg cgccactcgg
      661 tccataagtg ttacaaaaat catttaaata gttactgtag tttctcctca tcgcctgtcc
      721 ctttcttatt cctctggcgt tagtagttca tcaattgtca ctcccaaata gtttgcgact
      781 ttttgaagtg tttcaatatc tggcttcttg gtacgttcgt agtacaaagc tatcaaagtg
      841 ctttttgaaa tgcctgtagc tttgtgaacg tcagaaacct ttttgcgttg cttagctagc
      901 aatacacgca tattgttctt catagtttta gacctccttt ttttgaaata tggaaaaaat
      961 gaagcgttaa cgctaaattt atgcttttaa ttatacacta tatttttatt gtgtcaagta
     1021 aaaaaataaa aaaacttgaa aaaaaatagc gtataagcta aaatgatttc aaggagggat
     1081 ttattatgct tcgtaataat ttagcaaagt taatgattga cagaggtatt tctgcaactc
     1141 aattatttaa tgatactggt atagcacgtt ctacaatttc aaaaatttca aataataata
     1201 ctgataaaat cagtttacaa actatagata agatatgtaa ttatctagag gtaactccag
     1261 aagatttttt tgatttttgg gcttatgagg tgaaaataca atgtggattt gtcaattatg
     1321 attcacttgc tgaggtaaga aaagaatggg aaccgattcc agattttaat gaacctgctt
     1381 ttttattgat tgaatttaca agaggaaaaa acacaaaaaa aatccttgaa tacaaattta
     1441 actactgtga agaatacgaa ccaggtatac catataacaa tggttattta gattctataa
     1501 ttcttgaaag tccagaaact gaaaccagta tttttgacaa tatgcctatt cagtttcaaa
     1561 atgaattgat agaagaagta aaaaaagcat tgtcggaaac ttttgatgtt ttatcatttt
     1621 cgccaacctt aagagattta gatttattta ctttaagtgg ggtaaaataa ccacaagccc
     1681 tctcaccacg ttcaaacact
//
LOCUS       DASFRC010000234         1670 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.237, whole genome shotgun sequence.
ACCESSION   DASFRC010000234 DASFRC010000000
VERSION     DASFRC010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1670)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1670)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1670
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.237"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     regulatory      99..203
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            310..1644
                     /locus_tag="U1087_002158"
     CDS             310..1644
                     /locus_tag="U1087_002158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HEM4756580.1"
                     /translation="MLELFKAINNLVWGPPLLLLLVGTGVYFTLRLGIFQISKLPTAF
                     RLIFSSDQSGQGDVSSFAALCTALAATVGTGNIVGVATAITTGGPGALFWMWVAAFFG
                     MATKYAEGFLAIKYRTKDANGQAAGGPMHYITLGMGQKWKPLAVFFAISGVLVALLGI
                     GTFSQVNSITASLETSFGLEPPLVSVITAISIVFVVFGGIEKISDVSTKIVPFMAILY
                     ILASITVLAVHWDQLLPTLALVFKSAFTPAAAVGGFAGATVQQAIQRGIARGVFSNES
                     GLGSAPIAAAAAKSDNPVEQGLISMTGTFIDTLIICTLTGFTILVTDQWSVEGLAGAP
                     LTQAAFSTVFGQPGVLALTISLVLFAYTTILGWSYYGERCIEFLFGTKAILPYRLVFV
                     AMVALGGFLKLDLIWTIADIVNGLMALPNLIALLALSPVIIKETRQYFAKKK"
BASE COUNT          389 a          332 c          409 g          540 t
ORIGIN      
        1 aaatattctt gattttttcg tgaaattaga ttaaaataaa actagataaa actgaataac
       61 cggttgatat tgggtagaag ggaaactgac tgttcaatgg acggaactct ggagagacca
      121 ttttggcacc gaaggggcaa ggtagtcctg cttggaaaag tagagctact gaaactctca
      181 ggtaaaagga cagagcgttg aaaaataggc tttttctgta tttttcacgt tgattctaga
      241 ggttgaagtg ttaagcctct ttttgttttt ccggcagctt tatcgggtta gaaacgctta
      301 ggaggaacta tgttagaact atttaaggct atcaacaatc ttgtttgggg accgcccctc
      361 ttgttactat tggtcggaac gggtgtctat tttaccctac ggttgggaat ctttcaaatc
      421 agtaaattgc cgacggcttt tcgtctgatt ttctccagtg accagtctgg tcagggagat
      481 gtgtccagct ttgcggccct ttgtacagct ttggcagcga cagttggtac aggaaatatt
      541 gtcggagttg cgacagctat tactacaggt ggtcctgggg ctcttttctg gatgtgggtt
      601 gcggcctttt tcggaatggc aaccaagtat gcggaaggat ttttagccat taaataccgt
      661 accaaggatg caaacggtca agcagctggt ggacctatgc actatatcac cttggggatg
      721 ggacagaagt ggaagccctt ggcagttttc tttgctattt caggtgtatt agtagctctc
      781 ttggggattg gaactttttc gcaagttaat tccatcactg cttctttgga aacgagtttt
      841 ggattggaac cgccacttgt cagtgtaata acggctattt caattgtctt cgttgttttt
      901 ggtgggattg aaaaaatctc ggatgtttca accaaaatcg ttcctttcat ggcgattttg
      961 tatatcttag caagtattac tgtcttggcc gtgcattggg atcaactctt gccaaccctg
     1021 gccttagttt tcaaatctgc ctttactcca gcagcggctg tgggcggttt tgcaggtgcg
     1081 actgtgcaac aagcaattca gcgtgggatt gcgcgtgggg ttttctcaaa tgaatctggt
     1141 ttgggttcgg cgcctattgc tgctgcggct gccaagtctg ataatccagt tgaacagggc
     1201 ttgatttcta tgacgggtac ctttattgat acacttatca tctgtacctt aacgggtttt
     1261 acgattctag taactgacca gtggtcggta gagggcttgg caggtgctcc tcttactcag
     1321 gcagcctttt cgacagtatt tggacagcca ggtgtcttgg ccttaaccat cagtctagtt
     1381 ctttttgcct atacaactat tctgggttgg tcttattatg gtgaacgctg tattgagttt
     1441 ctatttggaa ccaaagccat cttaccttac cgtctggtct ttgtagctat ggttgccttg
     1501 ggtggtttcc tcaaactaga cttgatttgg accattgccg atattgtaaa tggtctcatg
     1561 gccctaccaa acttgatcgc cttactagct ctctctcctg ttatcatcaa ggagacacgc
     1621 cagtattttg caaagaagaa ataagataaa agtcagccac ttggctgtct
//
LOCUS       DASFRC010000235         1647 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.238, whole genome shotgun sequence.
ACCESSION   DASFRC010000235 DASFRC010000000
VERSION     DASFRC010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1647)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1647)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1647
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.238"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            169..1584
                     /gene="sufB"
                     /locus_tag="U1087_002159"
     CDS             169..1584
                     /gene="sufB"
                     /locus_tag="U1087_002159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016397186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HEM4756581.1"
                     /translation="MSEERIEPTPIDLGEYKFGFHDENVELVASTGRGLSEDVIREMS
                     RIKGEPEWMLEFRLKSYQTFKKMPMQTWGADLSELDFDDIVYYQKPSDKPARSWDDVP
                     DKIKETFERIGIPEAERAYLAGASAQYESEVVYHNMKEEYDKHGIIFTDTDTALKEHP
                     ELFKKYFGKLVPPSDNKLAALNSAVWSGGTFIYVPKGVKLDIPLQTYFRINNEGTGQF
                     ERTLIIVDEGASVHYVEGCTAPTYSTASLHAAIVEIIAHEGAYMRYTTIQNWSDNVYN
                     LVTKRARAEKNATVEWIDGNLGAKTTMKYPAVYLEGEGARGTMLSIAFANKGQVQDTG
                     AKMIHNAPRTSSSIVSKSIARGGGEVNYRGQVTFAKNSAKSISHIECDTIIMDDISKS
                     DTIPFNEIHNSQVALEHEAKVSKISEEQLYYLMSRGLSESEATEMIVMGFVEPFTKEL
                     PMEYAVELNRLIAYEMEGSVG"
BASE COUNT          500 a          378 c          365 g          404 t
ORIGIN      
        1 aaacaaaaaa tgaaaatcat acagaaagga ttgttcagtt tctgattgga aatgaaattg
       61 aactcgccct agaagctttt gaaaaagata aatctccgcg tgtgtttgca cacgaggtcg
      121 attccctatt tttcatttgc tttcttaagg ggccatgtat cttatattat gtcagaagaa
      181 agaattgaac caaccccgat tgatcttggg gaatacaaat tcggtttcca tgatgaaaac
      241 gtggaactgg tggcttcgac tggtaggggc ttgagcgaag atgtcattcg tgaaatgtcc
      301 cgtatcaaag gcgagcctga atggatgttg gaattccgtt tgaaatccta ccaaaccttc
      361 aagaaaatgc cgatgcagac ctggggagcc gacttgtctg agctggattt tgatgacatt
      421 gtctattacc aaaaaccgtc agataagcca gcacgcagct gggacgatgt gccagacaaa
      481 atcaaagaaa cctttgaacg catcgggatt ccagaagccg agcgtgctta tctggcaggt
      541 gcttctgccc agtacgaatc agaagtggtc taccacaata tgaaggaaga gtatgacaag
      601 cacggcatta tctttacaga taccgacacg gctctcaagg aacatccaga actcttcaaa
      661 aaatactttg gaaaactcgt tccgccgtca gataataaac tagctgccct caactcagcg
      721 gtttggtcag gtggtacctt catctatgta ccaaaaggcg ttaaattgga tattccactc
      781 caaacctatt tccgtatcaa caacgaagga acaggtcagt ttgaacgcac cctcattatc
      841 gtggatgaag gagcaagtgt tcactatgta gaaggctgta ccgctccgac ttactcaacg
      901 gccagccttc acgctgctat tgtggaaatc attgcccacg aaggtgccta tatgcgttac
      961 acgaccattc aaaactggtc agataacgtt tataacctag taaccaagcg tgcccgtgct
     1021 gagaaaaatg ccacagtcga gtggatcgat ggaaaccttg gtgctaagac gaccatgaaa
     1081 taccctgcgg tttacttgga aggcgaaggg gcacgtggaa ctatgttgtc cattgccttt
     1141 gccaacaagg gccaggttca agataccggt gccaagatga ttcacaacgc cccacgcacc
     1201 tcatcttcta tcgtgtccaa atctattgcc cgtggtggtg gagaagttaa ctaccgtggt
     1261 caagtcactt ttgctaaaaa ctcagccaag tctatcagcc acatcgaatg tgacaccatt
     1321 atcatggatg atatttccaa atcagatacc attccattta atgaaatcca taactcacaa
     1381 gtggccctcg aacacgaagc caaagtatca aaaatctcag aagaacagct ctattacctc
     1441 atgagccgtg gcctatccga atcagaagct acagaaatga ttgtcatggg ctttgtcgaa
     1501 ccattcacaa aagaactccc aatggaatac gcagtcgaac tcaacagact gattgcctat
     1561 gagatggagg ggagcgttgg ctaatttgtg tagctccaca tagctaagaa gctatttgga
     1621 gcacacaaat gccaacgctc gttggaa
//
LOCUS       DASFRC010000236         1572 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.239, whole genome shotgun sequence.
ACCESSION   DASFRC010000236 DASFRC010000000
VERSION     DASFRC010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1572)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1572)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1572
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.239"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            13..1503
                     /locus_tag="U1087_002160"
     CDS             13..1503
                     /locus_tag="U1087_002160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HEM4756582.1"
                     /translation="MSNKEFSQEFLKTIIFSKRKELGYSQQELSDLTGINRAMISKLE
                     QGEYLPSIPQLLALSNVLEFEINSLFVSDFPKSIGTLPAKKIAVAGTGYVGLSIAVLL
                     AQHHQLTAVDIIQEKVDLINAKKSPIQDDYIEKYLAEKDLNLVATLDAETAYREAEIV
                     VIAAPTNYDSAKNYFDTSHVEEVIQTVLSVNPQALMVIKSTIPVGFTQSMREKFATDN
                     IIFSPEFLRESKALYDNLYPSRIIVSCEEGTPTSVVEGSRLFASLLQEGALKEDVDVL
                     YMGSTEAEAVKLFANTYLALRVSYFNELDTYAELKGLDTESIIKGVGLDPRIGDHYNN
                     PSFGYGGYCLPKDTKQLLANYNDVPQNMMSAIVESNRTRKDFIADQILKIAGYYDYSS
                     HDQYSQSGEKEVIIGVYRLTMKSNSDNFRQSSIQGVMKRLKAKGAKVIIFEPTLENGS
                     TFFGSKVINNLNQFKSKSHAIVANRYDSVLDDVLDKVYTRDIFRRD"
BASE COUNT          481 a          258 c          331 g          502 t
ORIGIN      
        1 tgaggtgaaa ttatgagtaa caaagaattt tctcaagaat ttcttaaaac tattattttt
       61 tctaaaagaa aagagttagg atattctcag caggaacttt ctgatttgac aggaataaat
      121 agggctatga ttagcaagtt ggagcaaggg gagtatcttc cttcgattcc ccagttattg
      181 gctttgagca atgtgcttga gtttgaaatt aacagtttat ttgtttctga ttttccgaag
      241 tcaatcggca ctcttccggc aaaaaaaatc gctgtcgcag gaacgggcta tgttgggcta
      301 tctattgctg ttttactagc ccagcatcat caactcacag ctgtggatat tatccaagaa
      361 aaagttgatt taatcaatgc aaagaagtct cctattcaag atgattatat agagaaatat
      421 ctcgcggaaa aggacttgaa tttagtagca acacttgatg cagaaacagc ctacagagag
      481 gcagaaattg ttgtgattgc tgctccaacg aactatgata gtgctaagaa ttacttcgat
      541 acaagtcatg tggaagaagt tattcaaaca gtattatcgg tcaaccctca agctttaatg
      601 gttatcaaat caacgattcc tgttggcttt acccaatcta tgcgtgagaa atttgctacg
      661 gacaatatta tttttagccc ggagtttctt agagagtcaa aagcacttta tgataatctt
      721 tacccttcac gaattattgt gtcttgtgaa gaagggactc caacttcggt agtagaaggt
      781 tcaagattat ttgcctcact tctacaagag ggagccttga aggaagatgt tgatgtactc
      841 tatatggggt cgacagaagc agaagcagtc aagctctttg ctaatactta cttagccctg
      901 cgtgtttctt acttcaatga attggatacc tatgcagagt tgaaagggct ggataccgaa
      961 tccattatca agggtgttgg cttagatcca cgtattggtg accactacaa taacccttct
     1021 tttggctatg gtggatactg tctaccaaaa gatactaagc agttgttggc gaattacaat
     1081 gatgttccgc agaatatgat gtctgctatt gtagagtcaa ataggactcg taaggatttt
     1141 attgctgatc aaattttgaa gatagctggt tattatgatt attcgtcaca tgatcaatat
     1201 tctcaatcgg gagaaaaaga agtgatcatc ggtgtgtatc gcttgacaat gaagagtaat
     1261 tctgataatt tccgtcaaag ttctattcag ggagttatga aacgtctaaa agccaaaggg
     1321 gcaaaagtga ttatttttga accgacttta gagaatggtt ccaccttctt tggttcaaaa
     1381 gtgattaata atttgaatca gtttaaatct aaaagtcacg caattgttgc aaatagatac
     1441 gactctgtct tggatgatgt attagataaa gtgtatacgc gtgatatttt tagaagagac
     1501 tagtcttcta aagctacatt tttaattgtg tgtttagatt tctaggggag aaggctcgtt
     1561 gctcttctct ct
//
LOCUS       DASFRC010000237         1549 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.240, whole genome shotgun sequence.
ACCESSION   DASFRC010000237 DASFRC010000000
VERSION     DASFRC010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1549)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1549)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.240"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..757)
                     /locus_tag="U1087_002161"
     CDS             complement(<1..757)
                     /locus_tag="U1087_002161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756583.1"
                     /translation="MKTSTLGKLLELPNFHHFYTVPIRENTESSGNYIIVFEQDKQPV
                     FVDLKNETGHTREVRFASHFDSAGLLVGLGAIPINYWPTCQILGVNKNNNRRGLSLSS
                     LMDGYGRLPIFKEMAERYRARGQSTIYDPYRYSYTIDEKKVIKDNQLTLIPKKEYEKI
                     KDFHPFLQTKHGNVYAVPCFYQDRKRNQITKIYIMGWYFYEKQLKISWKPSHSRKSRW
                     RSSLVSVDKLSDRFFFQGELYKKGTYPVFLEDLT"
     gene            complement(877..1549)
                     /locus_tag="U1087_002162"
                     /pseudo
     CDS             complement(877..1549)
                     /locus_tag="U1087_002162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943206.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          480 a          302 c          281 g          486 t
ORIGIN      
        1 ttgtgagatc ttccaggaac actggatagg ttcctttttt atacaattct ccttgaaaga
       61 agaagcggtc agataattta tcaactgaaa caagagaaga acgccagcgg cttttacgag
      121 agtgagaagg cttccaagat atttttaatt gcttctcata aaagtaccag cccataatat
      181 aaattttagt aatctgattt cgttttctgt cttgatagaa acaaggaact gcataaacat
      241 ttccatgctt tgtttgcaaa aaaggatgga aatcttttat cttttcgtat tctttctttg
      301 gaataagggt taattgatta tccttaataa ccttcttttc atcaatagta tatgaataac
      361 ggtaggggtc ataaatggtt gattgtccac gcgctctata acgctctgcc atttccttaa
      421 aaataggtag acgtccataa ccatccatca gactagatag actaagtcct cgtcgattat
      481 tatttttatt cacaccaaga atctggcagg taggccaata attgatagga atggctccta
      541 atccgaccag aagaccggcg ctgtcaaaat gactggcaaa gcgtacctca cgagtgtgac
      601 cagtctcatt tttcaaatca acaaatacag gttgcttgtc ctgttcaaaa acaattatat
      661 aatttccaga agactccgta ttttctctaa ttggaacggt gtagaagtgg tgaaaatttg
      721 gtaattctag taactttcca agtgttgatg ttttcataac acaagtataa caaaaaatat
      781 ttttcaaatc cacaaagacg tttaatttgt taaacaaaat ataaagaaac tgggaaagac
      841 atccatgacg actttcccac tcccaccgtt tattaaagga taggtgatga ttgtcttatc
      901 taccgaatct tctaaagcct ggcgcgattc ttctgataaa cgcaaatctg caagggtttg
      961 ttctgaaaaa tagtagggat ttagactatc tacaaatgca gaaattgaaa tgacagcttt
     1021 ctccaatatc agggattttt cagtgtaagc aaagggaata gcagaccaat catcactctc
     1081 gaacatttct aaaatatctt tttgaacttg aatttcatcc tcatttttag ctgaaactag
     1141 gattgttttt agtgtagcac gaaaactttc cttgtcttgc accaagtctt ccaaggtcaa
     1201 caagctttca tctgccttct cataaaaaat atctaattcc gtctctgacg aagtagtcac
     1261 acggagccag tcagccttga tactggtttt cattactgca taggcagaag tattttcaaa
     1321 gggactgctg cgcgtttgag gatagagaac aatccactct ttctggaata gattgtcagg
     1381 tttagctatt ttcagttcct cctcagaagc tgtaccaatc cgctggctga tagcagtagt
     1441 gtcatctcgc tgaaagaatc caatgatacg cggattttgc ggaccaccaa tggcatcaat
     1501 ttttgttcct agatcattaa taatgcgtat gttcaaggca tgccactgc
//
LOCUS       DASFRC010000238         1539 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.241, whole genome shotgun sequence.
ACCESSION   DASFRC010000238 DASFRC010000000
VERSION     DASFRC010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1539)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1539)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1539
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.241"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(88..762)
                     /locus_tag="U1087_002163"
     CDS             complement(88..762)
                     /locus_tag="U1087_002163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HEM4756584.1"
                     /translation="MSEQFIPSVLSDLRQDIVQMPEVIKECSGIRIYGRRIRSVLFTT
                     DVSIIANHNADAILAVYPFTPSPAIIKSIMLVASVPVLAGVGGGLTTGMRSANMSLLS
                     ESEGAYAVVVNGPTDVKTIEAINKVVDIPIIYTVVSEKSDLTSRIKAGVDILNVSCGM
                     ETPRVVKKIREAFPDFPIIATGGPTEDSIRRVIEAGANAVSYTAPSNGELFKGKMEKY
                     RKHAKD"
     gene            complement(948..1295)
                     /gene="rplS"
                     /locus_tag="U1087_002164"
     CDS             complement(948..1295)
                     /gene="rplS"
                     /locus_tag="U1087_002164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005590628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HEM4756585.1"
                     /translation="MNPLIQSLTEGQLRTDIPSFRPGDTVRVHAKVVEGNRERIQIFE
                     GVVISRKGQGISEMYTVRKISGGVGVERTFPIHTPRVDKIEVVRYGKVRRAKLYYLRA
                     LQGKAARIKEIRR"
BASE COUNT          476 a          349 c          264 g          450 t
ORIGIN      
        1 ctaatctcac accgtaaaac gataaaaaac agcaagtttc atctagcaat aaaacttact
       61 gtttgcttag cctatctttt ttatgagcta atcctttgca tgtttgcggt atttttccat
      121 tttcccttta aaaagctccc cattacttgg tgctgtatag gagacagcat tggctccagc
      181 ttcgataacc cgacgaatag agtcctcagt cggaccacca gtcgcaataa ttggaaagtc
      241 agggaaagct tctcgaatct tcttcacaac ccttggcgtt tccataccgc aagaaacatt
      301 tagaatatct actccagctt taatccgtga ggttaaatca gacttttcag aaacaacggt
      361 ataaatgata ggaatatcta ctaccttatt gattgcctca attgttttta catccgttgg
      421 tccatttacc acaacagcgt atgctccctc cgactcagac aagagactca tattagctga
      481 acgcatacct gtcgtcaagc ctccaccaac accagccaag actggaactg acgcaaccaa
      541 cataatactt ttgataatag ctggactggg cgtaaatgga taaacagcca aaatagcatc
      601 tgcattgtga ttggcaataa tagacacatc cgttgtaaat aagactgaac gaatgcgacg
      661 accataaata cgaattccac tacattcctt gataacttct ggcatctgaa caatatcctg
      721 ccgtaaatct gataaaacag atggaataaa ctgttcgctc atccgcaacc tcctctatac
      781 tagctacaat aatatatagt ataacatatt atttcatgga agatacacaa aaacaatcca
      841 ttttaccact gctttcacaa tttggtactt tttcaacaga ttttttaaaa aaagagacag
      901 ctttcgctgc ctcccattct ccgaccaaaa tagtctgtag gactatctta acgacggatt
      961 tctttgatac gtgctgcttt accttgcaat gcacgtaggt agtacaattt agcacgacgt
     1021 actttaccgt aacgtactac ttcaatctta tcaacacgtg gagtgtggat tgggaatgta
     1081 cgttcaacac ctacaccacc agagatttta cgtacagtgt acatttctga gatgccttga
     1141 cctttacgag agataacaac accctcgaaa atctggatac gttcgcggtt accttcgaca
     1201 accttagcgt gaacacgcac agtgtcacca ggacggaatg aagggatgtc agtacgaagt
     1261 tgaccttctg tcaaactttg gatcaatgga ttcattttat tctcctatct ttgtcaatct
     1321 taggtgcttt taaacccagc ggataaactg tatttttgtg cgtccattac acgcagacta
     1381 tattatacac caagtaatca cctatgtaaa gcattttgat aaatttatca tggtcaatca
     1441 caccgcttct tttacaagtt aagtcaacaa ggtctgggtt tgattttcga agagtgttaa
     1501 tgatacagat tcctgttgga gaaaaacgaa aagaggctg
//
LOCUS       DASFRC010000239         1514 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.242, whole genome shotgun sequence.
ACCESSION   DASFRC010000239 DASFRC010000000
VERSION     DASFRC010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1514)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1514)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1514
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.242"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            96..1493
                     /locus_tag="U1087_002165"
     CDS             96..1493
                     /locus_tag="U1087_002165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEM4756586.1"
                     /translation="MKKVSFWLGINIALLGIMVSLAVWLFAGLQERQVSQFIEEKQQT
                     ILAKGKGKIQEGNIDTTHVVAALPTDDAGHVLGPVESRMISYVQRRFGHKKPAGKIQK
                     LVFISSIEGKTNFKNITAREIQAEHYKVDNLQIKKQDKLPSERVLLTQDNELFTLEDL
                     LPNLSSAASIIVDHLREALLAQGMKETDVEAIVKKFETLDLNAISFSYGDSQLTLQLP
                     DGYGINQLVLPISDLYPVVKSDYLVDADKVGYDEYMAAQVVDKKHLRQVALTFDDGPN
                     PNTTPVVLDLLKKYNAKATFFVVGKAVAGNKAILRRMVAEGHVIANHTWNHPNLVTIS
                     GEQVQREIQDTQAAITEATGIVPTMVRPPYGSVNQAVVNQMGLPSIYWSVDSKDWKSR
                     NPQAILKEIKEQTCPGSIILMHDIHQSTVDSLESVLQYLTGEGYNMVTVTDLLASPLN
                     PQLIYYSQELSGPAQ"
BASE COUNT          493 a          270 c          317 g          434 t
ORIGIN      
        1 acctaatctt tttatgagtt tttatagaac tgtcttgaca agatccttta aatgatttag
       61 catagtttat atatgttttg aatgggaggc tggatatgaa aaaagttagt ttttggttgg
      121 gaatcaacat cgccttgctc ggcataatgg taagtttggc tgtatggtta tttgcaggac
      181 ttcaagaaag acaggttagt cagtttatcg aggaaaaaca acaaaccatc ctcgctaaag
      241 gcaagggcaa aattcaagag ggaaacattg atacgaccca tgttgtggct gccttaccta
      301 cagatgatgc aggtcatgtc ttaggacctg tagaaagtcg aatgatttcc tacgttcaaa
      361 gacgctttgg tcataaaaaa ccagcaggaa aaattcaaaa actggtcttt atttcatcaa
      421 tagagggaaa aacaaatttt aaaaatataa cagctcgtga aattcaagcg gagcactata
      481 aagtagacaa cttgcaaatt aaaaagcagg ataaactccc gtctgagcgt gtgttgttga
      541 cgcaggacaa tgaattgttt accctggaag atttattacc taatttatcc tctgcagcaa
      601 gtattattgt tgatcatcta agagaagctt tacttgctca aggaatgaaa gagactgatg
      661 tagaagcgat tgtcaaaaaa tttgaaacac tagacttaaa tgctatttcc tttagttatg
      721 gagacagcca attaacctta caattaccag atggttacgg catcaaccag ttggttctac
      781 caatttcaga tttgtaccca gtagtgaaga gtgattatct agtagatgct gataaggttg
      841 gctatgatga gtatatggct gcacaagttg tggataagaa acatttgaga caggttgctc
      901 taacctttga tgatggacca aatccgaaca cgacaccggt agttttagat ttactgaaaa
      961 aatataatgc caaagcaact ttctttgttg ttggtaaggc tgtagctggg aataaagcta
     1021 ttctccgtag aatggtagca gaagggcacg tcatcgccaa ccatacgtgg aatcatccca
     1081 atctagtcac tatttctggg gagcaagtac agagagaaat tcaagataca caggcagcta
     1141 ttactgaagc tacaggtatt gtaccaacaa tggttcgccc tccttatggt tcggttaacc
     1201 aggctgttgt caatcagatg ggacttccat cgatttattg gtcggtcgat tctaaagatt
     1261 ggaagagtcg caatccccaa gccattttga aagaaataaa agaacagact tgtccaggaa
     1321 gtattatcct aatgcatgat attcatcagt caacagttga tagcctcgag tctgtattgc
     1381 aatacttaac aggcgagggc tacaatatgg ttactgtaac agacttactc gccagtcctc
     1441 tcaatcctca attaatctat tattcacaag aattatctgg tccagcccag taagaatgat
     1501 aaaaggctta gaat
//
LOCUS       DASFRC010000240         1473 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.243, whole genome shotgun sequence.
ACCESSION   DASFRC010000240 DASFRC010000000
VERSION     DASFRC010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1473)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1473)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1473
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.243"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(401..1427)
                     /locus_tag="U1087_002166"
                     /pseudo
     CDS             complement(401..1427)
                     /locus_tag="U1087_002166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611577.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
BASE COUNT          465 a          270 c          258 g          480 t
ORIGIN      
        1 ataaaaaaaa ttaagagagc atgtaaatag aaaagggttc cagagtcgac aggactttgg
       61 agcctttttc aatatacctt gttattgggc ggttacgaag aattgatact catttaaaat
      121 caaaattagc tatctactaa tcaaattgaa tatagagaat tttaaatttg aagttttcga
      181 aaagagaatg gctagtcaaa atctatgatt tccaatctga acttagatat tgaaatttta
      241 cacatagaaa ttgatatcaa tatgctatag ttgagtgaat tagaaacagg acatatctaa
      301 gtttgtcaat ttgagaactc caaagttatt tttaggagtg ggttattaac actataactt
      361 aaaattgtcc tttttctaat tcaaaccact ataatactca ttaaaaatca aaaagcctac
      421 ttgtccattc tctatggaca atcgacttca aatcagacca atgcaagccc tgaatagttg
      481 tttgaagctg atcaatcact gattctaatg tcttaaaaac cctattttta aatcctcgtt
      541 tccgaatttc tgcccaaact tgctcaatag gattcatttc aggagtgtaa ggtgggatga
      601 aagtaaaccc gatattatgc gggatttcta atgcttgtgc tttatgccag acagcattat
      661 ccataatcaa taaaagataa tcgttgggat aagctaagga tagctggcga agaaactcat
      721 tcatccactc agtattacag ccccctgcta tcagaaaaaa tgattctcct gtacgagcat
      781 ctactgcgcc ataacaatat cggaattcac ggatatgatg actcggaaca gacggtctag
      841 tcccctttgg tgtccaacac ttcccttgct tactaattct tccgaaacca gcctcatctt
      901 agaacatcaa tcgtacttta ttaaagcgct ttcttatctt cttgaatata gattttattt
      961 ttagacgcta aaatcatatt tgcgtctgct tttttaggat gttccgggcg aggagtcacc
     1021 ttgtgccagc catgacgagc caaaagagag taaaacccta cgcgagtggt ggtttgtcca
     1081 accagtttct gataagcctg atagagagtt gcgatcgtga catattcacc agtcagcgct
     1141 ctttctaatt gatctttcag aaatgcagtt tcctcttcaa acgacagata agcaggatgc
     1201 ctaccacctc gtttttcttg gaggagtatg tcgagaccat gttctttaaa cttcgctaga
     1261 cttcgttgaa tcgtactgat gttacagtct agcaattcag aaatctcttt gtaggtcatt
     1321 ccttttgaac ggaataagat aatttgaagc cgtttatgga atttagaaaa cgaagaatct
     1381 tttaaaagtt ttttgagttg ttgttcatct ttattggtta atttcataac accattatac
     1441 tatgcttttt aatttttatc gagtataaga gag
//
LOCUS       DASFRC010000241         1452 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.244, whole genome shotgun sequence.
ACCESSION   DASFRC010000241 DASFRC010000000
VERSION     DASFRC010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1452)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1452)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1452
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.244"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(36..887)
                     /locus_tag="U1087_002167"
     CDS             complement(36..887)
                     /locus_tag="U1087_002167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HEM4756587.1"
                     /translation="MTKWKIVADSGCDYRQLANLAPNTEFISVPLTIQVGEQAFVDDA
                     SLDIDHMMEVMEASKSAAGSACPSPQAYQAAFEGAENIIVVTITGGLSGSFNAARVAR
                     DMYIEEHPNVNIHLIDSLSASGEMDLLVDEINRLIGAGLDFPQVVEAITHYREHSKLL
                     FVLAKVDNLVKNGRLSKLVGTVVGLLNIRMVGEASAEGKLELLQKARGHKKSVTAAFE
                     EMKKAGYDGGRIVMAHRNNAKFFQQFSELVKASFPTAVIDEVATSGLCSFYAEEGGLL
                     MGYEVKA"
     gene            1014..1418
                     /locus_tag="U1087_002168"
     CDS             1014..1418
                     /locus_tag="U1087_002168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM4756588.1"
                     /translation="MTGRKISPQSLKNLYQSNKEANQLTKESIETALLFLLEKKELKQ
                     ISVSELVRKAGVSRNAFYRNYKSKEEILEIYYERTSSNLKKKWHDLQDKVQKDGVKQS
                     FADFVQEQKRKAEQSKALSNVSQWIKEKTKRD"
BASE COUNT          460 a          340 c          242 g          410 t
ORIGIN      
        1 ctactgttga ttttcattga gtattactct gtgaatcacg ctttcacttc atagcccatc
       61 aaaagtccac cttcttcagc ataaaaactg catagacctg atgttgcaac ttcgtcaata
      121 acagccgttg gaaaacttgc ttttaccaac tctgagaatt gttggaagaa cttagcattg
      181 ttgcggtggg ccatgacaat tcgaccacca tcatagcctg cttttttcat ttcttcaaag
      241 gctgctgtca cagatttctt atgaccacgc gccttttgaa gcaactctaa ttttccttca
      301 gcgcttgcct caccaaccat acggatattg agaagaccaa cgacagtgcc taccaatttg
      361 ctcagtcttc cattcttaac aagattatca accttcgcta aaacaaagag gagcttactg
      421 tgttcccgat aatgagttat cgcttctact acttgtggaa aatctaatcc tgcaccaatt
      481 aagcgattga tttcgtcaac aagtaaatcc atttccccac tggctgacaa actatctatc
      541 aaatggatat tgacattcgg atgctcttcg atatacatat ccctagctac acgtgccgca
      601 ttaaaactac ccgatagccc acctgtaatc gtcacaacga taatgttctc agctccctca
      661 aaagctgcct gataagcctg cggacttggg cacgcagacc ccgctgcaga cttagatgct
      721 tccatcacct ccatcatgtg atcaatatcc aagcttgcat catcaacaaa tgcttgttct
      781 ccaacttgga tggtaagtgg cacactaata aattcagtgt tcggagctag attagctaat
      841 tgacgatagt cacagcccga atctgcaaca attttccatt ttgtcataat attctcattt
      901 ccaattttac ttttttattt gacaataaat ctctatttac ttacaattat atcattaaac
      961 taccccatct gaaagcattt tctttcagat gtgacactcg gaaaaggaaa actatgacag
     1021 gtcgtaaaat ttcaccccaa tctttgaaaa acctctatca atcaaataaa gaagcgaatc
     1081 aactgactaa ggaatcaata gaaactgctc tgctatttct cctagagaaa aaggagctca
     1141 agcaaatttc agtatctgaa ttggttcgta aagcgggagt ttctcgcaac gctttctatc
     1201 gcaattataa gtcaaaagaa gaaattttag agatttatta cgaacggact tccagcaacc
     1261 ttaaaaagaa atggcatgat ttgcaggaca aggttcaaaa ggacggcgtc aagcaaagct
     1321 ttgcagattt tgtccaggaa caaaaacgca aggcagagca aagcaaggcc ctgtccaacg
     1381 tcagtcaatg gatcaaggaa aaaacaaaac gggattaaaa gtccaatgtc attaagttaa
     1441 ctaacctatc ac
//
LOCUS       DASFRC010000242         1436 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.245, whole genome shotgun sequence.
ACCESSION   DASFRC010000242 DASFRC010000000
VERSION     DASFRC010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1436)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1436)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1436
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.245"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            87..1238
                     /locus_tag="U1087_002169"
     CDS             87..1238
                     /locus_tag="U1087_002169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family transcriptional regulator"
                     /protein_id="HEM4756589.1"
                     /translation="MITDKYLIREQNEALVLQTIIENKGLSRAQIAKETGLNKASVSS
                     ITTSLIDSGLVEETGIGQSGKTGGRKPIFVNFCGKAGLVIAFDLGYNYISGAISYLDG
                     TIIRQFRERHLLNRENIIDYIEQYSKELLSAAPLTLHDVVGMTLAIHGIVVDNHIRFT
                     PSYDLKDFPLKKELEKRFYFPIYLENEANLSALGEFTFSQSRDNLISISIHSGIGAGI
                     IQDKRLQTGAHGQAGEIGHTILHPKGKACNCGNLGCLEKYASNLVVYQEFSKHYNLKH
                     ANSDLISQYYLCSDSFTQELINQQIYHQAIGINNLIMLCDPQLVIINSSLYAKIPKLL
                     DKLESEINSQFAQKVSLTISNLGDTATLYGGIATAVQQFLHIPDLTFPR"
BASE COUNT          480 a          277 c          251 g          428 t
ORIGIN      
        1 ttcccctttt attccccttt ttcccctttt tgtggcataa taacagtaaa aacatctaga
       61 aataatctcg tcaaaaggaa atgagaatga ttacagataa atacttaatt cgtgaacaaa
      121 atgaagcctt agtgcttcaa actattattg aaaacaaagg cctgtctaga gctcaaattg
      181 ctaaggaaac cggactcaat aaggctagcg tctcgtctat tactacttct ctcatcgata
      241 gtggccttgt ggaagaaaca ggaattggac aatctggtaa gaccggggga cgaaaaccta
      301 tttttgtcaa tttttgtggc aaggctggtc tggtgattgc ctttgacttg ggctataact
      361 acatcagtgg agcaatcagc taccttgacg gcactattat tcgtcaattt agagaacgtc
      421 atctcttaaa cagagaaaat attatcgatt acatcgaaca atacagcaaa gaattactgt
      481 cagcagcgcc actgacccta cacgatgtgg tcggcatgac tctggccatt catgggattg
      541 tggtggataa tcacatccgt ttcacccctt cttatgattt gaaagatttt cctttaaaaa
      601 aagaactgga aaaacggttc tatttcccta tatacttgga aaatgaggct aatctttcgg
      661 cattaggaga atttaccttc tcacaatcca gagacaatct tatcagcatc agtatccata
      721 gcggtatcgg agcaggtatt attcaggata aacgcttgca gactggagct catggacaag
      781 ctggtgaaat tggacatacc attttacacc ccaaaggcaa ggcttgtaat tgtggtaatt
      841 tgggatgctt agagaaatat gcatcaaatc tagtcgtata tcaagaattc tccaaacact
      901 ataaccttaa gcatgctaat tcggacctaa tttctcaata ttatctttgc tcagattcct
      961 tcactcagga actcataaac caacagatct atcatcaagc tattggtatt aataatctca
     1021 tcatgctttg tgatcctcaa ctagtaatta tcaatagctc gctgtatgct aagataccca
     1081 aacttctaga taaattggaa tcagaaatta atagtcaatt tgcacaaaag gtctccttaa
     1141 caatttcgaa cctaggtgat acagcaacac tatatggagg tattgctaca gctgttcaac
     1201 agtttttaca tataccggat ttaacgtttc ctagataaga aacaaaaaaa ctaagtaggt
     1261 tacaccagct aacaaattac agtaaaaaga tttcaatata taatagggtg gaaaattata
     1321 actacgtggt atttaataga gctttatcca ttctatccaa aaatatgagt catgggaaaa
     1381 ctcagatatg cttaaaagcc tgaaattcaa attacaagta gtattttatt ctattg
//
LOCUS       DASFRC010000243         1427 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.246, whole genome shotgun sequence.
ACCESSION   DASFRC010000243 DASFRC010000000
VERSION     DASFRC010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1427)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1427)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1427
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.246"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(18..1325)
                     /gene="eno"
                     /locus_tag="U1087_002170"
     CDS             complement(18..1325)
                     /gene="eno"
                     /locus_tag="U1087_002170"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002985288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEM4756590.1"
                     /translation="MSIITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTG
                     EHEAVELRDGDKSRYLGLGTQKAVDNVNNVIADAIIGFDVRDQQAIDRAMIALDGTPN
                     KGKLGANAILGVSIAVARAAADYLEVPLYTYLGGFNTKVLPTPMMNIINGGSHSDAPI
                     AFQEFMILPVGAPSFKEGLRWGAEVFHALKKILKTRGLVTAVGDEGGFAPKFEGTEDG
                     VETIIEAIEAAGYEAGENGIMIGFDCASSEFYDKERKVYDYTKFEGEGAAVRTSAEQI
                     DYLEELVNKYPIITIEDGMDENDWDGWKALTERLGKRVQLVGDDFFVTNTDYLARGIK
                     EGAANSILIKVNQIGTLTETFEAIEMAKEAGYTAVVSHRSGETEDSTIADIAVATNAG
                     QIKTGSLSRTDRIAKYNQLLRIEDQLGEVAVYKGLNSFYNLKK"
BASE COUNT          407 a          312 c          303 g          405 t
ORIGIN      
        1 tagtacactg tactaattta ttttttcaag ttgtagaatg agttcaagcc tttgtagact
       61 gcaacttcac caagttgatc ttcgatacga agcaattggt tgtatttagc gatacggtct
      121 gtacgtgaca atgaaccagt cttgatttga ccagcattag ttgcaactgc gatgtcagcg
      181 attgttgaat cttcagtttc acctgaacgg tgtgatacaa cggcagtgta gccagcttct
      241 ttagccattt cgatagcttc aaatgtttca gtaagagtac cgatttggtt aactttgata
      301 aggattgagt tagcagcacc ttctttgata ccacgtgcaa ggtagtcagt gtttgttacg
      361 aagaagtcgt caccaaccaa ttgaacgcgt ttgccaagac gctcagtaag agctttccag
      421 ccatcccagt cgttttcatc cataccatct tcgatagtga tgattgggta tttgttaacc
      481 aattcttcaa ggtagtcaat ttgttctgca gaagtacgaa cagcagcgcc ttcgccttcg
      541 aatttagtgt agtcgtaaac tttacgctct ttgtcgtaga actcagatga cgcacagtcg
      601 aaaccgatca tgatgccgtt ttcgccagct tcgtaaccag cagcttcgat agcttcgatg
      661 attgtttcaa caccgtcttc agttccttcg aacttaggag cgaatccacc ttcgtcacca
      721 acagctgtta ccaaaccacg agttttcaag attttcttca aagcgtggaa tacttcagca
      781 ccccaacgaa gaccttcttt gaatgaagga gcgccaactg gcaagatcat gaattcttgg
      841 aaagcgattg gagcgtctga gtgagaacca ccgttgatga tgttcatcat tggagttggc
      901 aatactttag tgttgaaccc accaaggtaa gtgtaaagtg gcacttcaag gtagtcagca
      961 gcagcacgcg caacagcgat agaaacaccg aggattgcgt ttgcacccaa tttacctttg
     1021 ttaggagtac cgtcaagagc aatcatagcg cggtcgatag cttgttgatc acgaacgtca
     1081 aaaccgatga tagcgtcagc aatcacgtta tttacgttgt caacagcttt ttgagtacca
     1141 agaccaaggt aacgagattt gtcaccgtcg cgaagctcaa ctgcttcgtg ctcaccagta
     1201 gaagctcctg aaggaaccat accacgtccg aaagcacctg attcagtata aacttcaact
     1261 tcaagtgtag ggttaccgcg tgagtcaagg acttcgcgag cgtaaacatc agtaataatt
     1321 gacattatat tactctcctt tgagtttaaa atagttacat agctatcata ccctaaaaga
     1381 agggattttt caagaaaaaa caggttattt tactgaaaga aataatg
//
LOCUS       DASFRC010000244         1423 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.247, whole genome shotgun sequence.
ACCESSION   DASFRC010000244 DASFRC010000000
VERSION     DASFRC010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1423)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1423)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1423
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.247"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..>1423
                     /locus_tag="U1087_002171"
     CDS             <1..>1423
                     /locus_tag="U1087_002171"
                     /inference="COORDINATES: protein motif:HMM:NF019202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1542 domain-containing protein"
                     /protein_id="HEM4756591.1"
                     /translation="EKAIDAATKADEVDAATLAGTKAIAADVLDAAKQDAKNKIAKDV
                     EAANAAIESNPNLSEKEIADAKAAVADEAKKANDAIDAATTPEAVQEKEEEGTKAIAA
                     DVLDAAKLDAKNKIAKDLATVEAAIDANSNLSDGEKEVAKLAAQAKAAEAVANIEKAT
                     TPEAVQTLEDAAVKDLANIEIKAAYDDAVKAIEAADNLSTAAKTQALEDLKKARQAAE
                     EAIKTASTADEVAKGALDGLKSIAKVEAKAAADDAKAAIAQNSNLTDAEKKVYTDAID
                     KALKDTETKIDAATDADTVDAETVLAQKDIAKQEVAAATADAVKGIEANTNLTDAEKD
                     EYKATVTKAAETAEKAITDATTAADIQSKTFDATQDVAKEEVKADAADAIAGIKANDN
                     LSDTAKKEAIAAIEEARNTTLENIENAKTAKEVDTATLDAEKANAKAEIKAAADDAKK
                     AIDENANLPASDKNALKLAIDAEV"
BASE COUNT          560 a          292 c          327 g          244 t
ORIGIN      
        1 gaaaaagcca tcgacgcagc aaccaaagct gatgaagtag atgcagcaac tcttgcaggc
       61 acgaaagcta tcgccgcaga tgttcttgac gcagctaaac aagatgctaa gaacaagatt
      121 gccaaagatg tagaagcagc aaatgcagcg atcgagtcaa atccaaactt gtcagaaaaa
      181 gaaattgcag atgctaaggc agcagtagca gacgaagcta agaaagcaaa cgacgcaatc
      241 gatgcagcaa cgactccaga agcagttcaa gaaaaagaag aagaaggcac gaaagcaatc
      301 gctgcagatg ttcttgacgc agctaaattg gatgctaaga acaagattgc taaagacttg
      361 gcaactgtag aagcagctat cgatgcgaac tcaaacttgt cagacggtga gaaagaagta
      421 gcgaaacttg cagctcaagc taaggcagca gaagcagttg cgaacatcga aaaagcaaca
      481 acaccagaag cagttcaaac cttagaagat gcagctgtaa aagaccttgc aaacatcgag
      541 attaaagcgg cttacgatga cgcagtgaaa gcgatcgaag cagctgacaa cttgtcaaca
      601 gcagctaaaa cacaagcctt agaagacttg aagaaagctc gccaagcagc agaagaagct
      661 attaagacag catcaacggc tgatgaagtt gccaaaggtg cacttgatgg cttgaaatct
      721 attgctaaag ttgaagcaaa agcagcagct gacgatgcaa aagcagctat tgcacaaaat
      781 tcaaacctga cagatgctga gaagaaagtc tacacagatg caatcgataa agcgttgaaa
      841 gatacagaaa ctaagattga cgctgcaacg gatgcagata ctgttgacgc tgaaacagtt
      901 cttgctcaaa aagacatcgc taagcaagaa gtagccgcag ctacagctga tgctgtgaaa
      961 ggtattgaag caaataccaa cttgacagat gctgaaaaag atgaatacaa agcaactgtt
     1021 accaaagcag ctgaaacagc tgaaaaagct attacagatg caacaacagc agctgacatt
     1081 caaagcaaga ccttcgatgc tactcaagat gttgctaaag aagaagtaaa agctgacgca
     1141 gctgatgcaa ttgcgggtat caaggccaac gacaacttgt cagatactgc caaaaaagaa
     1201 gcaattgcag ccattgagga agcaagaaat accactcttg aaaacatcga aaacgcaaaa
     1261 acagcaaaag aagtagatac agcgacactt gacgctgaaa aagcaaatgc taaagcagaa
     1321 atcaaggcag cagccgatga cgctaagaaa gcaatcgacg aaaacgcaaa cttgcctgca
     1381 tctgataaga acgctcttaa attagcgatt gatgcagaag ttg
//
LOCUS       DASFRC010000245         1399 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.248, whole genome shotgun sequence.
ACCESSION   DASFRC010000245 DASFRC010000000
VERSION     DASFRC010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1399)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1399)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1399
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.248"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(161..568)
                     /locus_tag="U1087_002172"
     CDS             complement(161..568)
                     /locus_tag="U1087_002172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArpU family transcriptional regulator"
                     /protein_id="HEM4756592.1"
                     /translation="MIDEKKTIAITKRYLKQYPRLKTIARTTTTLQSNWNVSDKVKSG
                     TTRNTQEDRLLNAIAVSQEVEEIERAISNLDKLHCDILTEKYIKRQKSDYGIHQDMNI
                     SESCFYKTLRTALVDFACIFKNGELLQYKDSQS"
     gene            complement(891..1331)
                     /locus_tag="U1087_002173"
     CDS             complement(891..1331)
                     /locus_tag="U1087_002173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000572369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756593.1"
                     /translation="MTEQEFFEQAEKELEELNQRRANYMADDTPVEVADIPKLLKIGA
                     MLRNEDTSLNAYELYKHPEARAKLFAQITEACYMVIGQTPSQSEKLNFGQYLEGQFQA
                     IVKKMIGQTNTQALGELVAALDLDDKLASQFIRDIAVSGLLAKD"
BASE COUNT          332 a          283 c          260 g          524 t
ORIGIN      
        1 attgctgtaa gtgtattata tcatgttttt actgtttcct actgtgtttt actgtatcta
       61 aaaatttcaa aaagggaaaa ttgtgcacgg aaaggggcgg cgttgtttaa tcacgaacaa
      121 acccaccccc gttttaaaaa gttgggggta tttacgaatt ttagctctga ctgtctttat
      181 actgcaataa ttccccattc ttaaatatac aagcaaagtc taccaaagct gttcgtaatg
      241 ttttgtaaaa acatgactca cttatgttca tatcttggtg tataccgtaa tcggatttct
      301 gtcgcttgat atacttttct gtaagtatgt cacagtgtaa cttatccaag tttgagatag
      361 ctcgctctat ttcttccact tcctgactca ctgcgatagc gttcagcaat ctatcttctt
      421 gcgtgtttcg ggtcgttcct gattttacct tgtccgatac attccaattg ctttgtaaag
      481 tggtggtagt gcgtgctatg gttttcaatc gtggatattg ttttaaatac cgtttagtga
      541 ttgctattgt tttcttctcg tctatcatcg tatctaaaaa aatcaagcta gcgtcctcca
      601 actgtgatat aatagtttta ggtttttact cacagtcagt acaagtgtgc tggctttttt
      661 gtattttctc tttgttcgct ctctgttcaa tcacgcgcca ccatacgttc atctattcgt
      721 cgttttagaa attgccaaag tacttcaact ctatagctat ttcaaactta gtttttctta
      781 gtattgccta tatagatttg attgtagtat tttgtagtat cttatatctg tttttatctg
      841 aggttttctg aggtaagtta aacaacaaaa agaggcgggg cctctcattc tcaatctttg
      901 gctaatagtc cactgactgc aatatctcgg ataaattggc ttgccagctt atcgtctaag
      961 tctaaggctg ccactagctc gcccaaggcc tgtgtattgg tctgaccaat catctttttc
     1021 actattgcct gaaattgtcc ctctaggtac tgcccaaagt tcagtttctc ggattggctt
     1081 ggagtttgac caataaccat atagcaggcc tctgtaatct gtgcaaataa cttagctctg
     1141 gcctctgggt gcttatatag ttcataggcg tttaagctag tatcttcatt ccgtagcatc
     1201 gcaccaattt ttagcaattt tgggatgtcg gcaacttcta caggcgtatc atctgccata
     1261 tagttagcac ggcgctggtt taattcctcc agctcttttt ctgcctgctc aaaaaattct
     1321 tgttcggtca tggtgtttgt tcctcttgtt ttagtctgtt gattgagtag cgtttatcct
     1381 taattgtgaa cgacttgaa
//
LOCUS       DASFRC010000246         1278 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.249, whole genome shotgun sequence.
ACCESSION   DASFRC010000246 DASFRC010000000
VERSION     DASFRC010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1278)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1278)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1278
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.249"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..>1278
                     /locus_tag="U1087_002174"
     rRNA            <1..>1278
                     /locus_tag="U1087_002174"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          381 a          242 c          381 g          274 t
ORIGIN      
        1 aaacatctaa gtagctgcag gaagagaaag caaaagcgat tgccttagta gcggcgagcg
       61 aaacggcagg agggcaaacc gaggagttta ctcctcgggg ttgtaggact gcaatgtgga
      121 cttaaagagt atagaagaac tacctgggaa ggtaggccaa agagagtaac agcctcgtat
      181 ttgaaatatt ctttatacct agcagtatcc tgagtacggc gagacacgcg aaatctcgtc
      241 ggaatccggg aggaccatct cccaacccta aatactctct agtgaccgat agtgaaccag
      301 taccgtgagg gaaaggtgaa aagtaccccg gaaggggagt gaaatagaac ctgaaaccgt
      361 gtgcctacaa caagttcgag cccgttaatg ggtgagagcg tgccttttgt agaatgaacc
      421 ggcgagttac gatatgatgc gaggttaagt tgaagagacg gagccgtagg gaaaccgagt
      481 cttaataggg cggattagta ttatgtcgta gacccgaaac catgtgacct acccatgagc
      541 aggttgaagg tgcggtaaga cgcactggag gaccgaacca gggcacgttg aaaagtgctt
      601 ggatgacttg tgggtagcgg agaaattcca aacgaacttg gagatagctg gttctctccg
      661 aaatagcttt agggctagcg tcgacatttg agaatcttgg aggtagagca ctgtttggat
      721 gagggggcca tctcggttta ctgatttcag ataaactccg aatgccaatg atttatggtc
      781 ggcagtcaga ctgcgagtgc taagatccgt agtcgaaagg gaaacagccc agaccaccag
      841 ctaaggtccc aaaataattg ttaagtggaa aaggatgtgg ggttgcacag acaactagga
      901 tgttagctta gaagcagcta ttcattcaaa gagtgcgtaa tagctcacta gtcgagtgac
      961 cctgcgccga aaatgtaccg gggctaaaac aatttaccga agctgtggat aacacattag
     1021 tgttatggta ggagagcgtt ctatgtgtga agaaggtata ccgtgaggag tgctggaacg
     1081 catagaagtg agaatgccgg tatgagtagc gaaagatggg tgagaatccc atccaccgta
     1141 agactaaggt ttccagggga aggctcgtcc gccctgggtt agtcgggacc taaggagaga
     1201 ccgaagggtg tatccgatgg acaacaggtt gatattcctg tactagagta tgaagtgatg
     1261 gagggacgca gtaggcta
//
LOCUS       DASFRC010000247         1208 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.250, whole genome shotgun sequence.
ACCESSION   DASFRC010000247 DASFRC010000000
VERSION     DASFRC010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1208)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1208)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1208
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.250"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..635
                     /locus_tag="U1087_002175"
     CDS             <1..635
                     /locus_tag="U1087_002175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEM4756594.1"
                     /translation="LSNPSAQRSYTVYIDPGHGGRDSGASYGGVHEKNLALSVSNKLR
                     ENLLQYGINVLMTRTGDYDVDFKTERSRMTNASNADLFISIHFNATGAGVSNATGIET
                     YWYQYDPEYQPKINKEMHNNPTRLAESEILANKVQESLIKETGAVNRGVRRETFAVLR
                     ETAIPAILVELGFMDNPSELQVIKQDSYHTRLAKALAQGVMNWYGAVEGK"
     gene            713..1141
                     /locus_tag="U1087_002176"
     CDS             713..1141
                     /locus_tag="U1087_002176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HEM4756595.1"
                     /translation="MEQSSKANSILSSVMLSQAILESAWGTSYLATHGNNLFGIKADA
                     AWTGATIEIITNEYRDGEKKQEKHLFRKYDSWNESVADYAKFFTSTPWRIKNYQSFRE
                     ATDYQQAILALRQSGYATDPKYGEKLRSIIENYKLYLLDN"
BASE COUNT          398 a          219 c          263 g          328 t
ORIGIN      
        1 acttatcaaa tccgtcggca cagcgatcct acacagtcta tattgaccca gggcatggag
       61 ggcgagactc gggcgcttct tacggtggcg tacatgaaaa aaatcttgct ttgtctgttt
      121 caaataagtt gcgtgaaaat ctcttgcaat atggaatcaa tgttttgatg acccgtacag
      181 gtgattatga tgtagacttc aaaacagaga ggtcacgaat gacgaatgca agcaacgcag
      241 acttatttat tagtatccat tttaatgcga cgggagcagg agtttcgaat gcgactggta
      301 tcgaaacata ctggtatcaa tacgatccgg aataccaacc taaaattaat aaagaaatgc
      361 ataataaccc tactcgttta gctgaaagtg agattttagc caacaaggtt caggagagtt
      421 taattaaaga aacaggtgca gttaaccgtg gcgtaagaag agaaactttt gcagtccttc
      481 gcgagacagc aattcctgcc attctagtgg agctaggatt tatggataat ccttcggaat
      541 tacaagttat caaacaagat tcttatcaca ctcgccttgc gaaagcattg gcacaaggcg
      601 taatgaattg gtatggtgct gttgagggaa agtagaaatt gcaggtacag gtattgaaac
      661 aggaaaactt tctaatgatc aaaaaagttt catagctaat ctagtacctg caattgagca
      721 aagttcaaaa gctaattcta tcctttcgag cgtcatgtta tctcaagcca tcctcgaaag
      781 tgcatgggga acgtcatact tggcgactca tgggaataat ctttttggca tcaaagcgga
      841 tgctgcgtgg acgggtgcta caattgaaat cattaccaat gaataccgtg atggtgagaa
      901 gaagcaagaa aagcacttgt ttagaaaata tgattcatgg aatgaaagtg tagcagacta
      961 tgctaagttc tttacctcta ctccgtggag aataaaaaat taccagagtt tcagagaggc
     1021 aactgattat caacaagcga ttcttgcgct aagacaatca ggatatgcta ctgatccgaa
     1081 atatggtgaa aaattacgat caattatcga gaattacaag ctttatcttt tagataatta
     1141 agttttttgc ccagcctctt tcaggggaca aataaatagc cttgctcaaa aacgagcaag
     1201 gctatttt
//
LOCUS       DASFRC010000248         1190 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.251, whole genome shotgun sequence.
ACCESSION   DASFRC010000248 DASFRC010000000
VERSION     DASFRC010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1190)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1190)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1190
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.251"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            239..>1190
                     /locus_tag="U1087_002177"
     CDS             239..>1190
                     /locus_tag="U1087_002177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001155321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS30 family transposase"
                     /protein_id="HEM4756596.1"
                     /translation="MQGHYTPKGKHLTIDNRRLIERWKLENKSNREIAGLLGKAPQTI
                     HNEIKRGTTLQQVRKGVYKKVYSADYAQTVYHSNRKRSVKKIILTKEMKEKILHYHKQ
                     KFSPEMIVKKKQVKVGISTIYYWFHNGHLGLKKSDMLYPRKGKGGKKQASPNFKPAGK
                     SIEERPEVINLRLENGHYEIDTVLLTRAKNQCLLVLTDRRSRHQIIRLIPSKTAEAVN
                     QALRLLLAEYHILSITADNGSEFKRLSEVFPEEHIYYAHPYSSWERGSNENHNRLIRR
                     WLPKGTKKTTPKEVAFIENWINNYPKKCLDYKSPSEFLLGG"
BASE COUNT          421 a          210 c          247 g          312 t
ORIGIN      
        1 agccacctta ccttagtcaa gaattagatg tttcactatg tttgagtaag ttgatgattt
       61 catttgataa caggcttgaa gctgttaggc tagttgccca aggctaatca tagccttggt
      121 ttagctgaaa aaacagcttc aagggtgcct ggtgtcaaat gaaatgtgat ttaaggtata
      181 agaaaacacc tctgtgctat acttgttgtt caccacaaac acaaggaaag gcacagagat
      241 gcaaggacat tataccccaa aagggaaaca tttgacaata gataaccgtc gcttgattga
      301 gcggtggaaa cttgaaaata agtcaaatcg tgaaattgca ggcttgttag gaaaggcgcc
      361 tcaaacgatt cataatgaaa tcaagcgtgg gacaacctta caacaagtgc gaaaaggggt
      421 ctacaaaaaa gtttattctg ctgattatgc acaaactgtt taccattcca atcgaaaacg
      481 gtcggttaaa aagataatcc taacgaaaga aatgaaagag aagattttac actatcataa
      541 gcaaaaattt tcacctgaaa tgatagtgaa gaagaagcaa gtgaaagtag gtatttcaac
      601 catctactat tggtttcata atggtcattt aggattgaag aaatcggaca tgctttatcc
      661 tagaaaaggg aaaggtggca agaagcaagc tagtccgaac tttaagccag ctggtaaatc
      721 aatcgaagag cgaccagagg tcatcaatct tcgattggaa aacggtcatt atgaaattga
      781 tacagttcta ctaaccagag cgaaaaatca gtgtctttta gtcttaaccg accgacgaag
      841 tagacaccaa atcatacgat taattccaag taaaactgct gaagctgtca atcaggcact
      901 taggttacta ttggctgagt atcatatttt atcaataact gcagataatg gttcggagtt
      961 caaacgattg tctgaggtat ttcctgagga acatatctac tatgcacatc cctactcttc
     1021 atgggaaaga ggttcaaatg aaaaccataa tcgattgatt cggagatggt tacctaaagg
     1081 aaccaagaaa acgactccga aagaagtagc ttttatcgaa aattggatta acaactaccc
     1141 taaaaaatgc ttggactaca agtcgccaag tgaatttctt ttgggtggct
//
LOCUS       DASFRC010000249         1178 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.252, whole genome shotgun sequence.
ACCESSION   DASFRC010000249 DASFRC010000000
VERSION     DASFRC010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1178)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1178)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1178
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.252"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            7..315
                     /gene="yajC"
                     /locus_tag="U1087_002178"
     CDS             7..315
                     /gene="yajC"
                     /locus_tag="U1087_002178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HEM4756597.1"
                     /translation="MEGLLFPVLMLGMIGFMFYSQRKQQKQRQDALSQIKKGDEIVTI
                     GGLFGVVDEIDDKKVVLDVDGVYLTFERGAIRNRVAEAANSVVVEETVETVQESAIEE
                     "
     gene            complement(474..602)
                     /locus_tag="U1087_002179"
                     /pseudo
     CDS             complement(474..602)
                     /locus_tag="U1087_002179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935801.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
BASE COUNT          312 a          184 c          254 g          428 t
ORIGIN      
        1 acacaaatgg aaggattatt atttcctgtt ttgatgcttg gcatgattgg ctttatgttc
       61 tatagccagc gcaaacaaca aaaacagcgc caagatgcac tcagtcaaat taaaaaaggt
      121 gatgaaattg tgaccattgg tgggctattt ggtgttgtcg atgaaatcga tgataagaag
      181 gttgttctcg atgttgatgg tgtttacttg acatttgaac gtggtgctat tcgtaaccga
      241 gtggcagaag cggcgaactc agttgttgtg gaagaaacgg ttgaaacagt tcaagaatct
      301 gcaattgaag agtaagaatt gctagtgaca gtttagcatt ttcgtctaag gctagttttc
      361 agattctcat tattcgtttt tcaacataca gtcaatattt tgaaaaaatc ggttttgatt
      421 agcgaaaatt attccttgta ttgaagtgtt tttacaatta aatatatgtt ttaggttatt
      481 gtatcaaaga tagctatctt acgttttgga cgaattgaga tgagtgggcc gtgtagaata
      541 tagacaacga tgttggcttg atggacatca atatctgcac aagattgata gagaatatcc
      601 atgatagtcc cgtcttctca agtttagtga gcttatctac cgaattttag ttgtattgtt
      661 tatactcatg cctattgcat attttggtgg tgctcgtcag tagagtggat cggtttttcc
      721 tgtgatggct aatagtcttc gagaatcaca agtagacgtt gttgacttga tttgatgaac
      781 tccagttcta tctgcatctg cgtcgtttag tctgattttg attttcattg agtataccat
      841 cattaactct tcaaccataa agccctcact aagatgttac atctagtggg ggttttatgg
      901 ttgctttcat tgttttgtgg gtgagagcag tgctgctatg gatgactttc ccactctctt
      961 ggtcccagtc atgtcgtttt ggaaattata gagcctgttt tccgaggtac ttcttgtccg
     1021 atttttgagc aaaagtgtta ttgttctcat cttctagcat ccaatgaact gtcaaatttt
     1081 ttgaaaaata tttgctcttg tttaactgtt agatagcggt gatttttacc atcatgtgtt
     1141 tcttttacag tagcagataa ccttttctgg aatatagt
//
LOCUS       DASFRC010000250         1155 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.253, whole genome shotgun sequence.
ACCESSION   DASFRC010000250 DASFRC010000000
VERSION     DASFRC010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1155)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1155)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1155
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.253"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..143
                     /locus_tag="U1087_002180"
     CDS             <1..143
                     /locus_tag="U1087_002180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM4756598.1"
                     /translation="DPELRKEVEKLILENRATGITQIVVTHDMQFAENIADEIIKIEP
                     KH"
     gene            170..1000
                     /locus_tag="U1087_002181"
     CDS             170..1000
                     /locus_tag="U1087_002181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000759190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM4756599.1"
                     /translation="MKKMMLGALALVTSLTLVACGSNDSATKSDNWIAYESEKSVTIG
                     FDKTFVPMGFEQTDGSYTGFDIDLANAVFEKYGITVKWQPIDWDLKETELNNGNIDLI
                     WNGYSITDERKEKVLFTNPYMDNQQVLVTKKSSNISQVSDMKDKILGAQAGSSGYSVF
                     ESQPAILKDIVQNNDASQYATFNEALIDLKNDRIDGLLIDRVYANYYLQQEGIIADYN
                     IIDAGFENEAFAVGARKSDTTLVENINKAFAELYKEGKFQEISQKWFGEDVATDAVKK
                     "
BASE COUNT          403 a          189 c          236 g          327 t
ORIGIN      
        1 tagaccctga attaagaaaa gaagttgaga aactgattct tgaaaatagg gctactggaa
       61 tcacgcaaat tgtggtcacc catgatatgc agtttgctga gaatatcgca gatgaaatca
      121 tcaaaattga accgaaacac taagaaaagg aacaaatatg atgatgaata ttaaaaaaat
      181 gatgcttgga gctcttgctc ttgtaacttc tttgactctt gttgcttgtg gctccaatga
      241 ttcggctact aagtctgata attggatagc ctacgagtct gaaaaatccg ttacgattgg
      301 ctttgataag acctttgttc caatgggatt tgaacagaca gatggttctt acacaggttt
      361 cgatattgac ttggctaatg cagtctttga aaaatatgga attactgtaa aatggcaacc
      421 aattgactgg gacttgaaag aaaccgaatt gaataacggg aatattgatt taatttggaa
      481 tggttattct attacagatg agcgtaagga aaaagttctt ttcacaaatc cctacatgga
      541 taaccaacaa gttcttgtaa ctaaaaaatc ttccaatatt agccaagtat ctgatatgaa
      601 ggataagatt ttaggtgcgc aagcaggttc atctggttat tcagtatttg aatcacaacc
      661 agctattttg aaagatattg ttcaaaataa cgatgcaagt cagtatgcga ccttcaatga
      721 agccttgatt gacttgaaaa acgatcgtat tgatggcctt ttgattgacc gtgtgtatgc
      781 aaattattac ttgcaacaag agggaattat cgcagattac aacatcattg atgcaggttt
      841 tgaaaatgaa gccttcgcag ttggtgctcg taaatcagat acgacactcg tagaaaacat
      901 taataaggcg tttgctgaat tatataaaga aggtaaattc caagaaatct cccaaaaatg
      961 gtttggtgag gatgttgcaa ccgatgcagt aaaaaaataa taatgtaaga aaaagtgact
     1021 gaacaagaca tccatgatgg ttacgccctc atccacagaa taatgaaaag aactcgtgaa
     1081 aacggtgggg gtgtacacca atatcattaa cttaagattc tacgaggctg agcaaaaagc
     1141 tcagcgccac ttctc
//
LOCUS       DASFRC010000251         1139 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.254, whole genome shotgun sequence.
ACCESSION   DASFRC010000251 DASFRC010000000
VERSION     DASFRC010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1139)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1139)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1139
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.254"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(45..560)
                     /locus_tag="U1087_002182"
     CDS             complement(45..560)
                     /locus_tag="U1087_002182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="QueT transporter family protein"
                     /protein_id="HEM4756600.1"
                     /translation="MNTSKWTARDMAEIALVAAIYVALTLTPPLNAISFGAVQFRLSE
                     MLNFLAFYNRKYIIAVTIGCMISNLIGFGVIDLFVGGFSTLIFVTLGVILFEKYKKDY
                     LFGGLFNKAFFYFSFFFAATMFTIALELKVLYDLPFFLTWLTTAAGELLSLLVGAVVI
                     DKLSKKINFEK"
     regulatory      complement(558..660)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01054"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="PreQ1 riboswitch class II; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="preQ1"
                     /db_xref="RFAM:RF01054"
     gene            689..1126
                     /locus_tag="U1087_002183"
     CDS             689..1126
                     /locus_tag="U1087_002183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HEM4756601.1"
                     /translation="MKKLFYQLINNEVILYLIAGVAATLVYMITRMGLFLFIPSILLV
                     TLLANAVAILFAFWTNDRFVFKQAREGWPKRLVKFVSARIATLVMDMALAYLLVQAYP
                     QLIGQFVNHDLTLVNAISTLFSQVLVIVLNYVLSKLFVFKDKK"
BASE COUNT          376 a          232 c          197 g          334 t
ORIGIN      
        1 gtctacccac tacagttgac aaagagccca catttattgt atacttactt ttcaaaattt
       61 attttcttgg atagtttatc gataacaaca gctccaacta atagagaaag caattctcct
      121 gctgctgttg tcaaccaagt tagaaagaat ggtagatcat ataagacttt taattctaaa
      181 gcaatggtaa acatagttgc cgcaaaaaag aatgagaaat aaaagaaagc cttgttaaat
      241 aatccaccga atagatagtc cttcttgtat ttttcaaaca gaataactcc caacgtaacg
      301 aagattaatg tcgagaatcc acccacaaag aggtcaatca cgccaaaacc aatcaagttg
      361 gaaatcatgc aaccaatggt cacggcgata atatacttac gattataaaa agccaagaaa
      421 ttgagcattt cagacaaacg aaactgaaca gccccgaagg aaatagcatt caatggcggt
      481 gtcaaggtaa gagcgacata aatcgccgca acaagagcaa tttctgccat atctctggca
      541 gtccatttag atgtattcat aaaattctcc tttagcaaaa aagcttaaaa tatgcttggg
      601 taaagtgagc aagtcccaag ggtcattgaa tttatcaaca acgttgatta gtatagcata
      661 tttttcctaa aaatgataga ctagtcctat gaaaaaacta ttttatcaac tcatcaataa
      721 cgaagttatt ctctatttga ttgcaggtgt ggcagcaacc cttgtttata tgattacccg
      781 tatgggactc tttctgttca tcccatccat tctgctagta actcttttag ccaatgcagt
      841 agctatcctc tttgcctttt ggaccaacga ccgtttcgtt ttcaaacaag ccagagaggg
      901 ttggcctaag cgattggtca agtttgtatc tgcccgcatc gcgaccttgg tcatggatat
      961 ggctctagcc tatttattag tacaagccta cccacaattg attgggcagt ttgtcaacca
     1021 tgatttgaca cttgtcaacg ccatttccac tctcttctct caagtcttgg tcattgtcct
     1081 aaactacgtt ttaagtaaat tatttgtatt taaagataag aaatgaggtt gggcaaaaa
//
LOCUS       DASFRC010000252         1137 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.255, whole genome shotgun sequence.
ACCESSION   DASFRC010000252 DASFRC010000000
VERSION     DASFRC010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1137)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1137)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1137
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.255"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..378
                     /locus_tag="U1087_002184"
     CDS             <1..378
                     /locus_tag="U1087_002184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HEM4756602.1"
                     /translation="DLTQLILQSKVDEARNLVRDLRLQGEEEVKLIVIMLTQFRTYLQ
                     VQILVEQGRGEQQIVAELSTIMGRKVNPYQVKYALRDSRHLSIGFLKKVVRLLIETDY
                     QIKTGRFDKDYLFDLVLLKIATA"
     gene            491..1096
                     /locus_tag="U1087_002185"
     CDS             491..1096
                     /locus_tag="U1087_002185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000974722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HEM4756603.1"
                     /translation="MAIILPDLPYAYDALEPHIDAETMTLHHDKHHATYVANANAALE
                     KHPEIGEDLVALLSDVEQIPADIRQALINNGGGHLNHALFWELLSPEKTEISAELAAD
                     IDATFGSFDAFKEAFTTAATTRFGSGWAFLVVNKEGKLEVISTANQDTPIMQGLKPIL
                     ALDVWEHAYYLNYRNVRPNYIKAFFEVINWDKVNELYKAAK"
BASE COUNT          368 a          220 c          237 g          312 t
ORIGIN      
        1 gatttaacac agttaattct acaatccaag gtagacgagg ctcgcaactt agttcgtgac
       61 ttgcggttgc aaggggagga agaggttaag ttgattgtca tcatgttaac tcaatttcga
      121 acctatctac aagtgcaaat cctagtagag caaggccgag gagaacagca gatagtagct
      181 gagttatcaa ctattatggg gcgtaaggtg aatccatacc aagtaaagta tgctttgcgt
      241 gattcacgcc atctgtccat tggatttttg aaaaaagttg ttcgattatt gatagaaaca
      301 gattatcaaa tcaagacagg acggtttgat aaggattatt tatttgattt ggtattatta
      361 aaaattgcga ctgcatagta aaaagagtat tcttagatcg agggtcaacc gtagtttcag
      421 acaaataaat tgaaaaggct ctcacattgg agtagaatag aactatcact tagtatggga
      481 gaaaacgaaa atggcaatta ttttaccaga ccttccatac gcatacgatg ccttggaacc
      541 acatattgat gcagaaacaa tgaccctgca ccatgacaag caccatgcaa cttatgttgc
      601 aaatgctaat gcagcccttg aaaaacaccc agaaatcggt gaagacttgg tagcactttt
      661 gtcagatgtg gagcaaattc cagctgatat ccgtcaagcc cttatcaaca acggtggcgg
      721 tcaccttaac catgcacttt tctgggaatt actttcacca gaaaaaacag aaatttcagc
      781 tgaattagca gcagatattg atgcgacctt cggttcattt gatgccttca aagaagcctt
      841 tacaactgca gcaacaactc gcttcggttc aggttgggct ttcttggttg tcaacaaaga
      901 aggcaagtta gaggttatct caacagctaa ccaagacaca cctatcatgc aagggttgaa
      961 accaatcttg gcattggatg tttgggaaca tgcttattac ctcaactacc gtaacgtccg
     1021 tccaaactac atcaaagcct tctttgaagt aattaactgg gacaaggtca acgaacttta
     1081 taaagcagct aaataagaac agttctcttc cgtttggaag agatttttta gttgtga
//
LOCUS       DASFRC010000253         1130 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.256, whole genome shotgun sequence.
ACCESSION   DASFRC010000253 DASFRC010000000
VERSION     DASFRC010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1130)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1130)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1130
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.256"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..606
                     /locus_tag="U1087_002186"
     CDS             <1..606
                     /locus_tag="U1087_002186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HEM4756604.1"
                     /translation="GRKEPYTLSSIVAECAEVKHRHLKMLINKHKDRLERFGKVHFKI
                     SPSKSGQNIRDYILNEQQATLLITFLKNTEQVANFKENLVRAFFEMRDEVAEFRYQRT
                     LEKPKRKALHEAIETWQEAPKHAHSTVTNLLLKGTTGMNKRQLVAHRGGFNGVDSLTS
                     QELIRYQALEDMAIAMINLGMTYQEIKNMVFRPLKNAPQGA"
BASE COUNT          408 a          221 c          252 g          249 t
ORIGIN      
        1 ggacggaaag agccgtatac attgagcagt atcgtagcag aatgcgcaga ggttaagcat
       61 agacacttaa aaatgctgat taacaaacac aaggatcgcc tggagcgttt tggaaaggtg
      121 cattttaaaa tttcaccttc aaaatctggg cagaatatac gcgactacat tttaaacgag
      181 caacaggcaa ctttgctgat tacttttcta aagaataccg agcaagttgc aaactttaaa
      241 gagaacctag tccgagcatt ctttgaaatg cgtgacgagg tggcagagtt tcgctaccag
      301 aggacactag agaaaccaaa gcgcaaggca ttgcatgaag ctattgaaac atggcaggaa
      361 gccccaaaac acgcgcacag cacggttaca aaccttttac taaagggaac taccggaatg
      421 aacaaacgcc agctagtggc acaccgtggc ggatttaatg gtgttgatag cctaaccagt
      481 caggagctta tcagatacca ggcactagag gacatggcta ttgctatgat caacttaggc
      541 atgacatacc aagaaattaa aaatatggta ttcagaccac taaaaaacgc accgcaaggc
      601 gcgtgagagc aacaaaaaag gcttatgcaa ccgaccaaag tagcaagcct tttaaccact
      661 aactaaaaca aaattaacaa gcaggcaagc tgttattaaa agggttttag taaagatttt
      721 tatagctaga ttataccata tctaggacac tttgaccata cagagggcgc taacccttaa
      781 aactggagta gaaaagtatt aggtgctggt atcggcatta ggttgcaatg gacccagggc
      841 aatctaaacc accctaagaa aattacacac agctaggcta ttattttggc acaggcttac
      901 atgaccacgg ggcaacctgg taagtttggg gtggttatcc gctgggaata gtctgggcta
      961 ggtatagaaa tcgtatagta aagaaccaat aagcaaagtc ttttgaactc actgagacag
     1021 cccacacggg ccattacaca gaaaatcata aacagaaaaa tgaggtaaaa aaatgaaaca
     1081 gtattttgaa caatttgaag aacggttaca agttgcagaa gaaaaattgg
//
LOCUS       DASFRC010000254         1116 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.257, whole genome shotgun sequence.
ACCESSION   DASFRC010000254 DASFRC010000000
VERSION     DASFRC010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1116)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1116)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1116
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.257"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..254)
                     /locus_tag="U1087_002187"
     CDS             complement(<1..254)
                     /locus_tag="U1087_002187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000564846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase family protein"
                     /protein_id="HEM4756605.1"
                     /translation="MIDFLLSIEEHKEEYDSRQAWKIRYPLSTILFLVFTCQLAGIET
                     WKEMEDFIEMNESILGEYVDLSAGCPSHDTLERVVSMVNP"
     gene            complement(409..999)
                     /locus_tag="U1087_002188"
     CDS             complement(409..999)
                     /locus_tag="U1087_002188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HEM4756606.1"
                     /translation="MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIA
                     QLLFLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGTAASMGTIIA
                     SSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKILADNSGK
                     TVKQIHKDAERDYWMSAEETLAYGFIDQIMDNTKVK"
BASE COUNT          316 a          229 c          211 g          360 t
ORIGIN      
        1 tctggattaa ccatactcac aacacgttcc aaggtgtcat gagaaggaca accagcactc
       61 aagtcaacgt attctcccaa gatagattcg ttcatttcta tgaaatcctc catctctttc
      121 cacgtttcaa tccctgctaa ttgacatgtg aaaaccagaa acagaatagt ggataaggga
      181 tagcgaattt tccaagcttg acggctatcg tattcttctt tgtgctcttc tatggataaa
      241 agaaaatcaa tcattgtagt tcacctctat tctagtgtac tactttgatt gatgtttggg
      301 tatgattttc gatttctgaa aacgaaattt tcttcatgcg tttggcgtga cctgtaaaag
      361 agttggagct aataggaata gtcagtacta ttacatattt gtcactgctt atttgacttt
      421 tgtattgtcc ataatctggt caataaatcc ataagccaag gtttcttcag ctgacatcca
      481 gtaatcacgt tctgcatcct tgtggatttg cttgactgtc ttacctgagt tgtctgccaa
      541 gattttttct agcttattac gtgtttttaa taggtgttct gcagcaatag ccatatctgt
      601 ttgctgagta ccaccaccag ttccacccat tggctggtga atcatgtact ctgcatttgg
      661 caacatgaaa cgtttgccct tggcaccgct tgatgcaatg atggttccca tgctcgcagc
      721 tgttcccata acgatggttt gaacatcagc tttaatgaaa ttcatcgtgt ctacaatggc
      781 aagacctgct gacaccgatc ctcctggcgt attaacatag aggtaaatat cctttgtagg
      841 gtcttgggca tcaaggaaaa gcaattgtgc aatgatagag tttgccatgt tgtcctcaac
      901 tggtcctgtc aacatgataa tgcggtcttt caaaaggcgt gagtaaatat cataagaacg
      961 ctcaccacgg ctagtttgtt caataactac tggaatcata aaattactcc ttttcgaggt
     1021 tttctgtacc cattatatat gaatagtcaa aattggtcaa ataaaaaaca cgatttcagg
     1081 aaatgaaaaa gaaaccagca gagctgattt cttaat
//
LOCUS       DASFRC010000255         1112 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.258, whole genome shotgun sequence.
ACCESSION   DASFRC010000255 DASFRC010000000
VERSION     DASFRC010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1112)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1112)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1112
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.258"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            72..644
                     /locus_tag="U1087_002189"
     CDS             72..644
                     /locus_tag="U1087_002189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018167100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756607.1"
                     /translation="MLKKYAWPLASLILTGAIWFLTPASDPTWIKNSIFAGFLIYLLL
                     LFLFISKLPKPDPDEPFYFGLSEKIYTVTLLAAMGIYGKGIWVITPATNPSWIKDVFL
                     GFGLFLLMAFFLYFAFKKVDEKPDDRFYTNLAKAACLSLCLVLLSLMILTIITFFQPF
                     TLTAGMILIFSATMILAFDFAFFFFEKRGG"
     gene            646..864
                     /locus_tag="U1087_002190"
     CDS             646..864
                     /locus_tag="U1087_002190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018030174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM4756608.1"
                     /translation="MANIITNLKEYRKAKKISQQELAQLVGVRRETIVHLENNRYNPS
                     LEMALKIAEIFDCHVEELFQLKKEAEND"
     gene            869..1048
                     /locus_tag="U1087_002191"
     CDS             869..1048
                     /locus_tag="U1087_002191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002961120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756609.1"
                     /translation="MTCSYCGASNTILCKQPHGYASVTPADKKMAFNGQTLYHDICKN
                     CGTVVRSFIKEPEKL"
BASE COUNT          311 a          281 c          207 g          313 t
ORIGIN      
        1 agttagaaat aaataacatt ttaaaaatga cgaattgaag ctagctcaaa aaataataaa
       61 ggatgattct catgcttaaa aaatacgctt ggcctctggc ctccctcatc ttaactgggg
      121 ctatctggtt tctgacccct gcttccgatc cgacctggat aaaaaacagc atatttgcag
      181 gctttctgat ctacctgctt ctcctctttc ttttcatctc caaacttcct aagccagacc
      241 cagatgagcc cttctatttt ggtttgtctg aaaaaatcta tacggttaca ctcttagccg
      301 ctatgggaat ctatggtaaa ggcatttggg tcatcactcc cgctacaaat cccagctgga
      361 tcaaggatgt cttcctagga tttggactct tcttgttgat ggctttcttc ctctactttg
      421 cttttaaaaa ggtggacgag aagccagacg atcgcttcta taccaatctg gccaaggccg
      481 cttgcctaag cctgtgcctt gtccttctca gcctaatgat tcttactatc attaccttct
      541 tccagccctt cactctcacg gctggtatga ttctgatttt cagcgccact atgattctcg
      601 cctttgactt tgcctttttc ttctttgaaa agagaggtgg ttaagatggc caatatcatc
      661 accaatctca aagaataccg aaaagcaaag aaaatcagcc aacaggaact ggcccaactg
      721 gttggtgtcc gtcgggaaac cattgtccac ctggaaaaca accgctacaa tccctctctc
      781 gagatggcct tgaaaattgc ggaaattttt gactgccatg tcgaagaact ctttcaactc
      841 aaaaaggagg cagaaaatga ctaaaaccat gacttgctcc tattgcggag cttccaatac
      901 tatcctatgt aaacagcccc acggctatgc tagcgtaact cctgcggata aaaaaatggc
      961 ctttaacggt caaacccttt atcatgacat ctgcaaaaat tgcggcaccg tggtccgttc
     1021 ctttatcaag gaacccgaaa aattgtagaa aaggcaacaa gggagtagga cagaactcga
     1081 ccaatccaag aagagttctt ctccgctccc tt
//
LOCUS       DASFRC010000256         1095 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.259, whole genome shotgun sequence.
ACCESSION   DASFRC010000256 DASFRC010000000
VERSION     DASFRC010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1095)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1095)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1095
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.259"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..477)
                     /locus_tag="U1087_002192"
     CDS             complement(<1..477)
                     /locus_tag="U1087_002192"
                     /inference="COORDINATES: protein motif:HMM:NF024751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM4756610.1"
                     /translation="MLQLLSGYPIIYIDETGIDTYLTRPRARAPRRHKVLEKISGRRF
                     ERISVVAGQIGNQFVAPMIYKESMTSDFFMKWFSEELLPSLSETHVIVMDNATFHPKK
                     QLDELCIEHHHFFLPLPPYSPELNPIETAWANLKKAIIELLPQFESINESLDCYFKT"
     gene            complement(515..844)
                     /locus_tag="U1087_002193"
     CDS             complement(515..844)
                     /locus_tag="U1087_002193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM4756611.1"
                     /translation="MAYDLDFRKRVISFVQDEGHTRKEACQLFDISVNTLYLWEQQLK
                     HHGTLAVKKRSSRPRKLPPDQLQKFVSEHPDAFLREIAEHFDCTPQSVWAALKKLKIT
                     LKKDKNL"
     gene            923..>1095
                     /locus_tag="U1087_002194"
     CDS             923..>1095
                     /locus_tag="U1087_002194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM4756612.1"
                     /translation="MKVLLATRLKNRRKELGWSQKELAEGVCDQGQISRIEKGTYMPG
                     ADLLHALAKKLQV"
BASE COUNT          337 a          197 c          224 g          337 t
ORIGIN      
        1 agttttgaaa tagcaatcca atgattcatt tatagattcg aattgcggta ataattctat
       61 gattgctttc tttaagtttg cccaagcagt ttcaattgga tttaattccg gtgaatacgg
      121 aggtaagggc agaaagaagt ggtgatgttc aatacaaagc tcatctagtt gtttcttagg
      181 gtgaaaagtc gcattatcca tcacaataac atgagtttca gataaggagg gtaacagctc
      241 ctctgaaaac cacttcataa aaaaatcact tgtcatactt tctttgtaaa tcatcggagc
      301 tacaaattga tttccaattt gaccagctac aactgaaata cgttcaaacc ttcgtccact
      361 aatcttctcc agaaccttat gcctcctagg agctctcgct cgtgggcgtg ttaaataagt
      421 atcaatgccg gtttcatcaa tgtaaatgat tggatagccg gataggagtt ggagaatggt
      481 tgagaactgc tggacttttc ctgcgtcctg ctctttataa gttcttgtct ttttttaaag
      541 ttattttgag tttctttaaa gcagcccaaa cagactgtgg tgtgcaatca aaatgttcag
      601 ctatttcacg gagaaaggca tctggatgct ctgagacaaa cttctgaagt tgatccggtg
      661 gcaattttct aggacgtgaa gaacgctttt taaccgccaa agtcccgtga tgttttaact
      721 gttgttccca taaatagaga gtgtttacgc taatatcaaa aagctgacaa gcttcttttc
      781 gagtatgacc ttcgtcttga acaaacgaaa tcactcgttt tctaaaatct aaatcgtatg
      841 ccataacttt agtataccat aattactgat ttaaaactga ttaactatat aataaatata
      901 gattggattc tgagaggttg atatgaaagt tttactagca acaaggttaa aaaatagaag
      961 aaaagaattg ggctggtcgc agaaggagtt ggcagaaggg gtctgtgatc aagggcagat
     1021 tagccgcatt gagaagggaa cctacatgcc tggtgcagac ttgcttcatg cccttgctaa
     1081 aaaactccaa gtcag
//
LOCUS       DASFRC010000257         1070 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.260, whole genome shotgun sequence.
ACCESSION   DASFRC010000257 DASFRC010000000
VERSION     DASFRC010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1070)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1070)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1070
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.260"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            27..816
                     /locus_tag="U1087_002195"
                     /pseudo
     CDS             27..816
                     /locus_tag="U1087_002195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612331.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS982 family transposase"
BASE COUNT          351 a          209 c          194 g          316 t
ORIGIN      
        1 aatggaatgt acgccaatta tcacaaattt gtcatcactt ctaccacaac tattgcccgg
       61 attccttcaa atattggcgt aatgttggct tagttaaagt ttcagatcaa tcaatccttg
      121 tctcttactt ttgttacaag ctgaactagg tatgacatca cagcgccatt tctacagcat
      181 ctgccacctc ttcccttgcg gtcagttact agaaagaagc cgtttcaatc gtcggtcaaa
      241 acaattgatt tggctagtcc aattaatccg aaaagctatg agtgaaatgc ttccatctga
      301 taaactagcc attatagata gttttccttt gccactttgc caacctgttt gcaatcacag
      361 agttaccatt tttaaaggat tagccgatat tggctacaac acctctaaac atctttggtt
      421 ctacggcttc aaggttcatc tgctagtgac cttatctggt tatattttga actatgttgt
      481 cacgccagcc tctgttcatg acatcaaggt ggtttatgag ctattagagg ggtgtaagca
      541 atcggttatc ttaggtgatt taggctacct aagtagtgaa ctcaaaaagg acttagagta
      601 agaaggttac catctatgga cgccgtttcg taaaaacatg acagggcccg aagaacataa
      661 caattggaaa gtaatggcca tgagacgaac tattgaaacg aactgtgtcg tctctttgac
      721 atcgaacata cattagctag aagcctagct ggactacagt tacgaattga acaaattaat
      781 ctagctcata acttacgcta ttttgaaatg agctagcaca acgggtaata gttatttatc
      841 acaatcttag aaatatacaa atatagtttt aaacggctag atctttagac acaggcatga
      901 ttctttcaag ccatactggt agtagagcta agaaatgagg agctaaaaac caatataata
      961 actcccttct gaagcagaat acaatatttg ccatagagta tcaatagcaa atgtacttta
     1021 aaaaagaaaa atcaaataaa gtatgctaga caaaaatgtc ctgtagaaag
//
LOCUS       DASFRC010000258         1063 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.261, whole genome shotgun sequence.
ACCESSION   DASFRC010000258 DASFRC010000000
VERSION     DASFRC010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1063)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1063)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1063
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.261"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            126..>1063
                     /gene="manA"
                     /locus_tag="U1087_002196"
     CDS             126..>1063
                     /gene="manA"
                     /locus_tag="U1087_002196"
                     /EC_number="5.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase, class I"
                     /protein_id="HEM4756613.1"
                     /translation="MEPLFLTPVMHEKIWGGNRLRTNYHYDIPSDKTGECWAISAHPN
                     GVTTVSNGQYKGRGLDDLYKNEKHLFGNPTDDVFPLLTKILDADDWLSVQVHPDDSYG
                     LAHEGELGKTECWYILEAEDGAEIIYGHNAQSKEELRQQIEAGDWDKLLTHVPVKKGD
                     FFFVPSGTMHAIGKGILILETQQSSDTTYRVYDFDRRDDAGNLRELHIEKSIDVLTIG
                     PVANSTPAHLKAGNLDSTLLVANPFFTVYKWNIQQEIKMEQTVPYLLVSVIEGEGTIQ
                     VGETSYPLQKGSHFILPADVTDWTFTGQMDIIASHT"
BASE COUNT          337 a          250 c          209 g          267 t
ORIGIN      
        1 tttctttttc tcacaaaatt agcaaaactt ctacagatta aatgcacttc cctcccagtg
       61 ctacatattt ctaacaaatc tgttatactt tatatagatc aatacttact actaaggaga
      121 aaatcatgga accattgttt ctcacacctg ttatgcacga aaaaatttgg gggggcaatc
      181 gcctaagaac caactaccac tacgacattc ctagtgataa gactggtgaa tgctgggcta
      241 tttctgccca tccaaatggc gtaacaacag tctcaaacgg tcaatataaa gggagaggac
      301 tggatgacct ctataagaat gaaaaacatt tatttggcaa tccaacagat gatgtctttc
      361 cattattaac aaaaatcctt gatgcagacg attggcttag cgtccaagtc catcccgatg
      421 atagctatgg cttggctcac gaaggggaac tgggcaagac agaatgttgg tacattttgg
      481 aagccgaaga tggggctgaa atcatttatg gccataatgc ccaatccaaa gaagaactcc
      541 gtcagcaaat cgaagctgga gattgggaca agctgttgac ccatgtaccc gtcaaaaaag
      601 gtgatttctt ctttgtacca agcggcacca tgcacgccat cggtaaggga atcctgattt
      661 tagaaaccca acaatctagt gatacaacct accgtgtcta tgattttgac cgccgtgacg
      721 atgcaggcaa cctccgtgaa ctacacattg agaaatcgat tgatgtactg accatcggac
      781 ctgttgctaa ctccacacct gcccacctca aagcgggcaa tcttgactcg acacttctgg
      841 ttgccaatcc cttctttacc gtatataaat ggaatatcca acaagaaatt aaaatggaac
      901 agacagttcc ttacctgctt gtcagtgtca ttgaagggga aggtaccatc caagtcggtg
      961 aaaccagcta cccacttcaa aaaggaagcc actttatctt accagccgat gtgacagact
     1021 ggacatttac aggacaaatg gacatcatcg caagccacac aaa
//
LOCUS       DASFRC010000259         1057 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.262, whole genome shotgun sequence.
ACCESSION   DASFRC010000259 DASFRC010000000
VERSION     DASFRC010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1057)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1057)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1057
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.262"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..966
                     /locus_tag="U1087_002197"
     CDS             <1..966
                     /locus_tag="U1087_002197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEM4756614.1"
                     /translation="GVYWRPVWHALCDDFELILAQPAHMKAIPGQKTDKKDAHWIAKL
                     TRIGLLPRSFVPDETIQELRELTRQRKHYVESRNRETNRIHKFLQSGGIKLTTYIEDI
                     MGLSGRNLLQLLVDGTPITPRIVHQSVYTSLKKKVPQLLEALDGYFSDHHRFMLKQSL
                     EIYDFYQKQIELLEERITVYLSQYENHVETLDSIPGIDVITASVIISEVGVDMSQFPT
                     SGHLASWAGLCPGNNESAGKKRSTKIRHGNSYLKKCLCQAAFAARNQKGSTLADRFYQ
                     IQSRRGSQKATIALAHQLLKIAYILLKEQMTYPEFLAQKRLLGTS"
BASE COUNT          312 a          218 c          224 g          303 t
ORIGIN      
        1 ggtgtctatt ggcgacctgt ctggcatgct ctctgtgatg acttcgagct gatactcgct
       61 caaccagccc acatgaaggc tattccaggt cagaaaaccg acaagaagga cgctcactgg
      121 attgccaaat taacacggat tggtctgctt cctcggagtt tcgttcccga tgaaaccatt
      181 caagaattga gggagttgac cagacaacga aaacattatg tggaaagtcg caatcgagaa
      241 acaaaccgta tccataaatt tcttcagtca ggtggtatca agctaacaac ctatattgaa
      301 gatattatgg ggctatctgg tcgcaatctc cttcagctac tggttgatgg gacgcctatt
      361 acacctcgca ttgttcatca atccgtttat accagcttga agaagaaagt gccgcagctt
      421 ctggaagcct tggacggtta tttctctgac catcatcgct ttatgttaaa gcagtcctta
      481 gagatttatg atttttatca gaagcagatt gagttgttgg aagagcgaat tactgtctat
      541 ctatcacaat atgaaaacca tgtagaaaca ttggattcca tcccaggcat tgatgtcatt
      601 acagcttctg ttatcatttc tgaggttggt gttgacatga gtcagtttcc gacatctgga
      661 catttagctt cttgggctgg actctgtcca ggtaataatg agagtgctgg taaaaaacga
      721 agtaccaaga ttcgacacgg aaattcttat ttgaagaaat gtttatgtca agccgctttc
      781 gccgctagga accagaaagg aagtacccta gcagaccgat tttatcagat tcaaagtcgg
      841 cgtggctcac aaaaagcaac cattgcactt gcgcatcaac tattaaaaat agcctatatc
      901 cttttaaaag aacagatgac ttatcctgaa tttttagcac aaaaaagact actagggacg
      961 agctagtagc ctaatataaa aattgtttca ctttgattct atcataggga gggagtttct
     1021 gcattctttt gagttttcgt ataagaactc gaccaga
//
LOCUS       DASFRC010000260         1052 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.263, whole genome shotgun sequence.
ACCESSION   DASFRC010000260 DASFRC010000000
VERSION     DASFRC010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1052)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1052)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1052
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.263"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..308)
                     /locus_tag="U1087_002198"
     CDS             complement(<1..308)
                     /locus_tag="U1087_002198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000891751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM4756615.1"
                     /translation="MLELRNLSKRFEDKQIFSNYDLVIPEGKIVAIVGQSGGGKTTLL
                     RMLAGLETIDSGTLMYNGQELPLEELGKRHLLGFVFQDFQLFPHLSVLENLVLSPMKT
                     "
     gene            complement(318..959)
                     /locus_tag="U1087_002199"
     CDS             complement(318..959)
                     /locus_tag="U1087_002199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004228788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM4756616.1"
                     /translation="MDYVLEVLPSLLNGAAVSLQVFFLVLMLSLPLGAVFAFLMQIKF
                     KPLQWLLHFYVLIMRGTPLLLQLIFVYYVLPSVGITFDRMPAVILAFTLNYAAYFSEI
                     FRGGIEAIPKGQYEAAKVLKFTPVQTIRYIVLPQVVKIVLPSVFNEVMTLVKDTSLVY
                     ALGVSDLLLASRTAANRDASLAPMFIAGTIYLLMIGAVTLISKQVEKKFDYYR"
BASE COUNT          377 a          218 c          183 g          274 t
ORIGIN      
        1 tgcgttttca taggagagag aaccaagttt tccaatacgg ataggtgcgg gaaaagctgg
       61 aagtcctgga agacaaagcc cagcaaatgt cgttttccca actcctctaa tggcagttct
      121 tgaccattat acatcaaagt tcctgaatca atagtctcta aaccagccaa catccgtaaa
      181 agagttgtct taccaccgcc agattgacca acgatggcaa caattttccc ttccggaatg
      241 accaaatcat agttggagaa aatctgttta tcttcaaagc gttttgataa attgcgtaac
      301 tctaacatga cttcctccta tctataataa tcaaatttct tttctacttg tttagaaatc
      361 agtgttaccg caccgatcat caataggtag attgtacctg cgataaacat aggcgccaag
      421 ctggcatcac gattggccgc agtacgacta gccaacaaca aatcgctaac cccaagtgca
      481 tagaccaaag aagtatcctt taccaaagtc ataacttcat tgaaaacact tggcagaaca
      541 atttttacaa cctgtggtaa gacaatgtag cgaatggtct gaacaggggt aaatttcaat
      601 accttagcag cttcatactg accttttgga atagcttcaa taccaccacg gaaaatttca
      661 gagaaatagg ccgcatagtt gagcgtaaag gccagaatca cagcaggcat tcggtcaaat
      721 gtaataccca cacttggtaa gacgtaataa acaaaaatta attgtaaaag caagggggtt
      781 cctcgcataa ttaatacata gaaatgcaat aaccattgca agggtttaaa tttaatctgc
      841 attaaaaaag cgaaaacagc tcctaatggc aaggataaca tcaatactag aaaaaatact
      901 tgcaaggaga ctgcagcacc atttagtaga ctgggcagaa cttccaaaac ataatccata
      961 gagctctcct aaaagaatga ttaggttcta gtatatcaaa aaatatcctt aatttcaaag
     1021 aatttttcag aatttttaat aaatttaaca aa
//
LOCUS       DASFRC010000261         1036 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.264, whole genome shotgun sequence.
ACCESSION   DASFRC010000261 DASFRC010000000
VERSION     DASFRC010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1036)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1036)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1036
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.264"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            44..229
                     /locus_tag="U1087_002200"
     CDS             44..229
                     /locus_tag="U1087_002200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756617.1"
                     /translation="MSHPIIPLTVPQSRRFEKRGRNDIMMKIRLGKVELTVFHTINQE
                     TLETILDKVLFYDHPTQ"
     gene            210..560
                     /gene="tnpB"
                     /locus_tag="U1087_002201"
     CDS             210..560
                     /gene="tnpB"
                     /locus_tag="U1087_002201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001846105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HEM4756618.1"
                     /translation="MTIQLSDLGQVYLVCGKTDMRQGIDSLAYLIKSQFNLDPFSGQV
                     YLFCGGRKDRFKALYWDGQGFWLLYKRFENGKLTWPNNEEEVKALTSEQVDWLMKGFS
                     IIPKINVSKSRDFY"
     gene            611..817
                     /locus_tag="U1087_002202"
     CDS             611..817
                     /locus_tag="U1087_002202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM4756619.1"
                     /translation="MSSLEKIIETQSKTIEMMANELTLLREQVDYLRQKLYGKSSEKV
                     VYQPGQLSLFGEESLPEEEADLPS"
     gene            771..>1036
                     /locus_tag="U1087_002203"
     CDS             771..>1036
                     /locus_tag="U1087_002203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase zinc-finger binding
                     domain-containing protein"
                     /protein_id="HEM4756620.1"
                     /translation="MGRKVSLKKKLTYPVETETITYKRKKAKGVRQAIFSQFTPEIVH
                     HELQGEDCTCPDCHGQLKEIGSTVQRQELVFIPAQLKRIDHVQHA"
BASE COUNT          329 a          208 c          223 g          276 t
ORIGIN      
        1 tcctccagta tactgttaga aaaacaaaac tggaggattt attatgtcac accccatcat
       61 tccattgact gttccccaat ctcgccgctt tgagaagcga ggcagaaacg atattatgat
      121 gaaaattcgt ctcggaaaag tggagctcac agtctttcac actatcaatc aagaaacact
      181 agaaacaatc ttagataagg tactgttcta tgaccatcca actcagtgat ttaggtcaag
      241 tttacttggt ctgtggaaaa acagatatgc gtcagggaat tgattccctg gcctatctta
      301 tcaaaagtca gttcaacctg gatcccttct ccggtcaggt ctatctcttc tgcggaggtc
      361 gaaaagaccg gttcaaagct ctttattggg atggacaggg attttggtta ttgtataaac
      421 gttttgaaaa tgggaaattg acctggccaa acaatgaaga agaggtcaag gctctaactt
      481 ccgagcaagt cgactggctc atgaaaggat tttctatcat tccaaaaata aatgtttcaa
      541 aaagtcgtga tttctattga aatcatggct tttctttgtg tataatgaga taaaaagaag
      601 gagattggtt atgtcatcac tagaaaaaat tattgaaaca cagtcaaaaa cgatagagat
      661 gatggctaat gaactcactc tccttcgaga acaggttgac tatctgagac agaaactcta
      721 cggaaaatca tcagagaagg tcgtatatca accaggtcag ctgagcttgt ttggggagga
      781 aagtctccct gaagaagaag ctgacttacc cagttgaaac ggagaccatc acctataaac
      841 gcaagaaagc taagggagtt cgtcaggcta ttttcagcca gttcactcca gagattgtgc
      901 atcacgaatt gcagggcgaa gactgcactt gtccagactg tcatggtcag ctgaaagaga
      961 ttggctcaac tgttcaacga caagagttgg tcttcattcc tgcacaatta aagcggattg
     1021 accatgttca acacgc
//
LOCUS       DASFRC010000262          992 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.265, whole genome shotgun sequence.
ACCESSION   DASFRC010000262 DASFRC010000000
VERSION     DASFRC010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 992)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 992)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..992
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.265"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(362..604)
                     /locus_tag="U1087_002204"
                     /pseudo
     CDS             complement(362..604)
                     /locus_tag="U1087_002204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001107589.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
     gene            753..980
                     /locus_tag="U1087_002205"
     CDS             753..980
                     /locus_tag="U1087_002205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000195665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM4756621.1"
                     /translation="MAQWTLKACRVNAGYTLRQVANKVGKNFQTISKYEKDSTLIPFE
                     LLKDLSELYHVKLDDIFLGDSTKKIELTSEE"
BASE COUNT          337 a          154 c          154 g          347 t
ORIGIN      
        1 gtggaaattc ttcgtcgctt gttggtaatt ttaaattttg cgttatctca tcacaaagat
       61 ggattaattc agaagctacc tctttatttg attcatttat attgatagtt ccctcaatta
      121 aatttaatgc tgtaatgaaa agttgatcgt tttttaatga aagatactct tctctctcag
      181 aaatttcagt taataaatcg agaactttat ttaaattttt actaagattt aagtccaaat
      241 cggaatgtaa attccaaggt gattcgccct cattgataat tatataatct tcttgtgtta
      301 aattcttgat tcctccgtac aaccttccga aatcgaatcc taaaccataa aaagtcgatt
      361 cttcttttgg gataaaacgt aaatctaaat cggatttttt tacatttaaa aaatcagcta
      421 ttttttgaag atttcccggt gtgggtaaag aagatccctt tacgtaccca gttattgtgc
      481 tttttggaat atctgtatta ttatgtaaat caatttgccg gactcctttt tctttcataa
      541 ttctattaag gttatcagaa aagtacgccc tattttttat atcctgtggg ctattctttg
      601 ccatgcgatt ccctccgttc cagaaatttc tattttgatt ataacacaaa aaacgaaata
      661 gtacgaaaaa aataaaactt ttgtttaaaa acacttgaca aagtacgaaa aaattagtac
      721 tatcatttta tcacttttga aaggagcaaa aaatggcaca atggacgcta aaagcgtgtc
      781 gagtaaatgc aggttatacc ttgcgacagg tagctaataa agtaggcaag aattttcaaa
      841 ccatctcaaa gtacgaaaaa gatagtactt tgattccttt tgaattattg aaagacttgt
      901 cagagttgta tcatgttaag ttagacgata tttttttagg cgatagtacg aaaaaaatag
      961 aactaacatc agaagaataa gaaagggaca ag
//
LOCUS       DASFRC010000263          980 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.266, whole genome shotgun sequence.
ACCESSION   DASFRC010000263 DASFRC010000000
VERSION     DASFRC010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 980)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 980)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..980
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.266"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..637
                     /locus_tag="U1087_002206"
     CDS             <1..637
                     /locus_tag="U1087_002206"
                     /inference="COORDINATES: protein motif:HMM:NF019142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="G5 domain-containing protein"
                     /protein_id="HEM4756622.1"
                     /translation="VDPVDEVVSVGILETKVADTAPEQVIKPELKWTTTIVPIPFQTR
                     YIVDNQLKLGEEIILVPGRNGQRQVIALVNGSVVGRNDEEIISDIVLLDPIEQIIKIG
                     NRSTDKAIDLPSKKEKTDISNLGLTLPNNKVSSTPIKLAETPKSIQYLTDRKYDSTVS
                     PSQLQQTNGVILPKTGEQKENFLARLGYISLLSLEFCWAISTLLKNKRKSK"
BASE COUNT          349 a          197 c          160 g          274 t
ORIGIN      
        1 agttgaccct gttgacgagg tggtaagtgt cgggatttta gagaccaaag ttgcagatac
       61 tgcccctgag caggttataa aacctgaact aaaatggact acaacaattg ttccgattcc
      121 tttccaaacg agatacatag tggataatca attgaagctt ggtgaagaga tcatccttgt
      181 tccaggaaga aatggtcaac gacaagttat tgctcttgta aatggctcag tcgttggaag
      241 aaacgatgaa gaaatcattt ctgatattgt tctcctcgat ccgatcgaac aaattatcaa
      301 aatcggaaac cgcagtaccg ataaagcaat agatctccca agcaaaaaag aaaaaacaga
      361 tatttcaaat cttggactaa cattaccaaa taataaagta agctctactc caattaaact
      421 cgcagagaca ccaaaatcaa ttcaatatct gactgacagg aagtatgatt caacagtttc
      481 tccgagccag cttcaacaaa ccaatggcgt aatattacca aaaacaggtg aacaaaaaga
      541 aaacttcctg gccagattgg gatacatttc cctattatct ttagaatttt gttgggctat
      601 ctcaactctt ctcaaaaata aaaggaagag taaataatat gtatttccat cccaaaaaaa
      661 gttagacttt tccatcccaa aaaaagttag acttttccgt ctaacttttt gagacagttc
      721 aacatagggt tacttctaat tcttatgaca ttgacgactc cttccttctt atgggaactt
      781 ttgaaagtcg accagatcta tactaatcgt ctacctcctc tcccaagaga taaaaaaact
      841 ctttggaaat aagaaaacag tattgagtag aatagcataa acttactaat aggcctatgc
      901 cacccaactc ccttaaagga ctctataatt tctatagtgg gcaaatccac tgtagaaatt
      961 atagatcctt tttttcatat
//
LOCUS       DASFRC010000264          972 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.267, whole genome shotgun sequence.
ACCESSION   DASFRC010000264 DASFRC010000000
VERSION     DASFRC010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 972)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 972)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..972
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.267"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(16..839)
                     /locus_tag="U1087_002207"
                     /pseudo
     CDS             complement(16..839)
                     /locus_tag="U1087_002207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009659387.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
BASE COUNT          342 a          231 c          165 g          234 t
ORIGIN      
        1 acagacttta acaaattatc ctagagcaac atccaaaatc atcatgatga taaaaccagc
       61 cattaagccc agagttgcaa tatccgtatt gccgtttgtc tgcgattctg gaatgagctc
      121 ttctacaacg acaaaaatca tggctcctgc cgcaaaggag agggcataag gtaaaatagg
      181 tgtcataaag gtgaccgcaa aagccccgat gactgctgca atcggctcga caattgctga
      241 cattgatccc cagtaaaaag ctttccacct agatgcgccg tctgtacgaa ttggaatagc
      301 taaggctgca ccttcaggaa tattttgata ccgatcccaa tagcaagacc gattgcgccg
      361 ataaaagctg ctggactata gttagaagct agtgcaccaa atgtcacacc gaccgccaag
      421 ccttcaggaa tattgtgaat tgtaatagct aagaagagca gggctgtttt ggatagattt
      481 tttctatcct tctcaccacc accttctgcc ttatctttat catttcccaa atgcaaatgc
      541 ggaacccagg catctaccaa gcgtaaaaaa ataccacctg ctgcaaaacc tactgccgct
      601 ggtatccaag ccagattacc gtatgaactt tcagcatact caatcgatgg ggctaataaa
      661 gaccaaaaag aagccgcaat cataacacca gctgcaaagc ctagcatggt atctagcaaa
      721 cgacgactaa ctgtcttaaa gaaaaataca acggcagacc ccataatcgt acaaaaccat
      781 gtgaataaac cacctagcaa agcctgtaga actacagact gattagtaac ccaagtcata
      841 actaacatcc tatcctgttt aatcttgcat atcctataaa gtaagatacc ctaatttatt
      901 ataaaattca agctttttca cttaaataaa taagaaaata tctaaaaaat aaaagaccta
      961 aaactacatt aa
//
LOCUS       DASFRC010000265          972 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.268, whole genome shotgun sequence.
ACCESSION   DASFRC010000265 DASFRC010000000
VERSION     DASFRC010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 972)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 972)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..972
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.268"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            756..>972
                     /locus_tag="U1087_002208"
     CDS             756..>972
                     /locus_tag="U1087_002208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HEM4756623.1"
                     /translation="MAEAGKPSLKTLRPDLEESVDFDKSENIFITGDNLEVLKVLQES
                     YLGKIDMIYIDPPYNTGKDFVYSDKFQM"
BASE COUNT          300 a          198 c          211 g          263 t
ORIGIN      
        1 agttgagttc tttcccactc cctaaaagtt gcactaattc gatttttgaa aaatattgtt
       61 tcaaaaatct catgtcgatg ccagagacaa tcagcatctc tattgatttt actctaacta
      121 atgtctgtcg cagaagcctt cgggctgatg tttcagttta gcacgttgct aatcgtgcta
      181 ctgacattta tttttaacaa tcgtaaaaaa taaaagacag ccaaccgcta cgaaactttg
      241 accgagtgaa ctagcaggtt gactgtaatc ttcatttgtc ccgtctttaa aatgttcaaa
      301 cagtctggga gactgtttga ggtcgtttct cgaaaacgga aggaaacgat actgggattg
      361 agttggcgct caatcccttt tccaaaacta ttataccaca aaccaaaatc gtttgacaat
      421 tttttatcta catcatcaaa aacggcttga cagcctaaga aaaggagaat accatgagca
      481 gagcagagca gagcagagca gagcagagca gagcagagca gaagcttgga gactacactc
      541 aagttgaaaa gctagaccta aggtcaaaag atgttttatc agacaacatt gcaaaaattg
      601 gtcagctttt tcctgaggtt ctaacagaaa gtagcgatga aaatggcagg ttgcgtccag
      661 ctattgactt tgacaagcta cgccaattcc tttcaagaga tattgttgaa gggcgggagt
      721 cctacgagtt tacctgggtc ggcaaacgcg gagcgattgc cgaggctggt aaacccagcc
      781 tcaaaaccct ccggccagat cttgaggaaa gtgttgattt tgacaagtct gagaatatct
      841 ttataactgg ggacaacctg gaagtcctca aggtcttgca ggagtcttat ctgggtaaga
      901 ttgatatgat ttacattgac ccgccttaca atacaggcaa ggactttgtc tactcggata
      961 aattccagat ga
//
LOCUS       DASFRC010000266          955 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.269, whole genome shotgun sequence.
ACCESSION   DASFRC010000266 DASFRC010000000
VERSION     DASFRC010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 955)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 955)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..955
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.269"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..>955
                     /locus_tag="U1087_002209"
     rRNA            <1..>955
                     /locus_tag="U1087_002209"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          235 a          226 c          287 g          207 t
ORIGIN      
        1 atcttaccag aaagggacgg ctaactacgt gccagcagcc gcggtaatac gtaggtcccg
       61 agcgttgtcc ggatttattg ggcgtaaagc gagcgcaggc ggtttgataa gtctgaagta
      121 aaaggctgtg gcttaaccat agtacgcttt ggaaactgtc aaacttgagt gcagaagggg
      181 agagtggaat tccatgtgta gcggtgaaat gcgtagatat atggaggaac accggtggcg
      241 aaagcggctc tctggtctgt aactgacgct gaggctcgaa agcgtgggga gcgaacagga
      301 ttagataccc tggtagtcca cgccgtaaac gatgagtgct aggtgttggg tcctttccgg
      361 gactcagtgc cgcagctaac gcattaagca ctccgcctgg ggagtacgac cgcaaggttg
      421 aaactcaaag gaattgacgg gggcccgcac aagcggtgga gcatgtggtt taattcgaag
      481 caacgcgaag aaccttacca ggtcttgaca tcccgatgac cgccctagag atagggtttc
      541 tcttcggagc atcggtgaca ggtggtgcat ggttgtcgtc agctcgtgtc gtgagatgtt
      601 gggttaagtc ccgcaacgag cgcaacccct attgttagtt gccatcattc agttgggcac
      661 tctagcgaga ctgccggtaa taaaccggag gaaggtgggg atgacgtcaa atcatcatgc
      721 cccttatgac ctgggctaca cacgtgctac aatggctggt acaacgagtc gcaagtcggt
      781 gacggcaagc taatctctta aagccagtct cagttcggat tgtaggctgc aactcgccta
      841 catgaagtcg gaatcgctag taatcgcgga tcagcacgcc gcggtgaata cgttcccggg
      901 ccttgtacac accgcccgtc acaccacgag agtttgtaac acccgaagtc ggtga
//
LOCUS       DASFRC010000267          951 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.270, whole genome shotgun sequence.
ACCESSION   DASFRC010000267 DASFRC010000000
VERSION     DASFRC010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 951)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 951)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..951
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.270"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..747)
                     /locus_tag="U1087_002210"
     CDS             complement(<1..747)
                     /locus_tag="U1087_002210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Arm DNA-binding domain-containing protein"
                     /protein_id="HEM4756624.1"
                     /translation="MIKQYQLKDGSVRYSYIAYVGIDPLTGKEKRVKKSGFKTQKEAR
                     IAESQLLLKVEQDGFFDEPDRITFEEVYKIWLEHYKNTVKASTYARQKAQADLHIIPA
                     FGACYVDKISLPVYQKQAQEWFKSYKKYANFIGMTKMVLDFAVNLGYIHDNPMKKIIK
                     PRKSSEVDEEEKKKENFYSREDLQKFLDCVAKEDKEEIACIFRLLAFTGMRKSEVLAL
                     RWKDLDFFTSRLSVSQIVAYGENNTIVYQTP"
BASE COUNT          233 a          186 c          181 g          351 t
ORIGIN      
        1 gggtgtttga tagacaatag tgttattttc tccgtaggct actatttggc taactgataa
       61 acgtgaggta aagaagtcta agtctttcca ccgtagggca agaacttcgc tttttctcat
      121 acctgtaaag gcgagtaagc ggaaaataca ggctatttct tccttgtctt cctttgctac
      181 gcagtctagg aacttttgca agtcttcacg gctgtagaag ttttcttttt tcttttcttc
      241 ttcatcgact tcagaggatt tacggggctt tattatcttc ttcatggggt tgtcatgaat
      301 atagcccaga tttaccgcaa aatctagtac catttttgtc ataccgataa agttagcata
      361 tttcttgtag ctcttaaacc attcttgtgc ctgtttttgg tacactggta ggcttatttt
      421 atccacgtag cacgcgccaa atgctggaat gatgtgtagg tctgcttgtg ccttttgtct
      481 ggcgtatgta ctagccttta cggtgttttt atagtgttcc agccatatct tatagacttc
      541 ctcaaaggtt attctatctg gctcgtcaaa aaatccgtct tgctccactt ttagaagtag
      601 ctggctttca gctattcggg cttctttttg agttttaaaa ccgctctttt ttacgcgctt
      661 ttctttgcct gtaagtgggt ctatacctac ataagcaata taagagtatc taacagagcc
      721 gtcttttaat tggtattgtt taatcatttg tgtatccttc ctattggttt ccccacctaa
      781 tcgaaagaat aaaatagtgt gcgcgtgttt ataagtggtt tctaatagtg ttctaagtat
      841 gaaaaaagtg cctagcaaaa ctagacacct cacgcaaata tacaccctca ggcgttataa
      901 atgctttctc cgtttatcta gtttatagta tttgggatta aatatcaatt a
//
LOCUS       DASFRC010000268          911 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.271, whole genome shotgun sequence.
ACCESSION   DASFRC010000268 DASFRC010000000
VERSION     DASFRC010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 911)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 911)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..911
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.271"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            139..>911
                     /locus_tag="U1087_002211"
     CDS             139..>911
                     /locus_tag="U1087_002211"
                     /inference="COORDINATES: protein
                     motif:HMM:TIGR01167.1,HMM:TIGR01168.1"
                     /note="The YSIRK form of extended signal peptide directs
                     nascent proteins to the cross-wall site, while signal
                     peptides lacking YSIRK direct proteins instead to the cell
                     pole. A large fraction of YSIRK proteins are surface
                     proteins anchored by sortase-mediated processing of a
                     C-terminal LPXTG motif; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YSIRK-type signal peptide-containing protein"
                     /protein_id="HEM4756625.1"
                     /translation="MFWKEKQNKFSIRKFNRGVASVIIGMTAALFFVPNLAIKAELTA
                     LAHTNVAREQISYKYVLYSELTSDEKARIQATIPARQVGDTHTYYMVYRPKTNLPQTG
                     DIPTFTSSLVGLGLLIIGLSLTKDRKKRIVRSLIILTATGSLSVAAISTGSLSGFDKQ
                     FSLAIGEALPQAVISIDQHEFVGYILEGHVNSEAITVSEAIIDEQGSLSELILPNILV
                     EGISKHSEAPIVDDIIPEEPTVPVVPSNPVTEQPEEPETP"
BASE COUNT          305 a          150 c          178 g          278 t
ORIGIN      
        1 tagatcaaga tataaataat tatgtaaata acaccgaata tagtatattg agccatattt
       61 tgtttgtttt aaaacagtat attattagaa aaatatgcta tacttttaag taagaagaaa
      121 caaacgaagg agcttcatat gttttggaaa gaaaagcaaa ataagttttc tattcgcaaa
      181 tttaatagag gcgttgcatc agttattatt ggtatgactg ccgccttatt ttttgtacca
      241 aatttggcta ttaaagcaga attgacagct cttgcccata caaatgtagc aagagaacag
      301 atttcctata aatatgtcct ttattcggaa ctgacatcag atgagaaggc acgaattcaa
      361 gcgaccattc cagcaaggca ggttggggat acccatactt actatatggt ctatcggcca
      421 aagacaaatt tgcctcaaac aggagatata ccgactttta caagtagtct ggttggttta
      481 gggctattga ttatcggtct atctcttaca aaagatagga aaaaacgaat tgttagaagt
      541 ctgattattt taactgctac aggtagtctt tcagtggctg caatttctac aggtagcctc
      601 tcaggttttg ataaacaatt tagccttgcc ataggtgaag ctttgccaca agcagtgatt
      661 tctatagatc aacatgaatt tgtaggttat attttagaag ggcatgttaa ttctgaagca
      721 atcacagtta gcgaagcaat tattgatgag caagggtcat tgagcgaatt gatattgcca
      781 aatatattgg ttgagggaat atctaagcat tcagaagctc ccattgttga tgatattatt
      841 cctgaggaac caacagtgcc tgttgtccca agtaacccag ttactgaaca accagaagaa
      901 ccggaaactc c
//
LOCUS       DASFRC010000269          892 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.272, whole genome shotgun sequence.
ACCESSION   DASFRC010000269 DASFRC010000000
VERSION     DASFRC010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 892)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 892)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..892
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.272"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            108..389
                     /locus_tag="U1087_002212"
     CDS             108..389
                     /locus_tag="U1087_002212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000492138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HEM4756626.1"
                     /translation="MFSLSRESEQDLTNGLLDMVGKYLEAREKVKPRTLGLITAQQVK
                     DELGIKDKTLKRWEDNGLRRYQPPLEDTRKIFYRVSDVLKFLGVENGKN"
     gene            376..>892
                     /locus_tag="U1087_002213"
     CDS             376..>892
                     /locus_tag="U1087_002213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage replisome organizer N-terminal
                     domain-containing protein"
                     /protein_id="HEM4756627.1"
                     /translation="MAKTKIYFWLKIDKKFFDNIFIKRLKTIPGGYTMTVIYIRLMLE
                     SLESDCILYYEGYFENLKEELALKLDVSEDDIDMTMAYFTKCGLIQIDEDQNAELPQA
                     KAMVMSETNWASYKREQRQNKERLDNVQKSLTNSNLCPTEKELEKEIELEKEIELEQQ
                     QEEKNAAAGVGK"
BASE COUNT          319 a          143 c          219 g          211 t
ORIGIN      
        1 tgagcgactt gccggagtgc taccgctcca acgacaatac gaccaggaac ataagcgtat
       61 tcacgcgctt ttgactgctg acttagaaga ctggaggaag tatagagatg tttagcctaa
      121 gcagagagag cgagcaagat ctaactaatg gcttgctgga tatggttgga aagtacctgg
      181 aggcgcgtga gaaagtcaaa ccaaggacac ttggactaat cacagcccaa caggttaaag
      241 atgaactagg cataaaggat aagactttga aacgctggga agataacggg ctaagacgtt
      301 accagccccc gctagaagat actagaaaaa tcttctatag ggtcagtgat gttttgaaat
      361 ttttgggggt ggagaatggc aaaaactaaa atatattttt ggttgaagat tgataaaaaa
      421 ttttttgata atattttcat taagagactg aagacaattc caggtggtta cactatgaca
      481 gtaatttaca tccgtcttat gcttgaaagt ttagaaagtg attgcattct ctactacgaa
      541 ggttattttg aaaatctcaa ggaagaattg gctttgaagt tggatgtgtc ggaagatgat
      601 atcgatatga ccatggcata ctttacaaaa tgcgggctaa ttcagattga cgaagaccaa
      661 aacgcagaat taccacaggc taaagctatg gttatgagtg aaacaaactg ggctagctac
      721 aaacgggaac aacgacaaaa caaagagagg ttggacaatg tccaaaagtc tttgactaat
      781 tccaacttgt gtccaacaga gaaagagcta gagaaagaga tagagctaga gaaagagata
      841 gagctagagc aacagcaaga agaaaaaaat gcggctgctg gagttggtaa aa
//
LOCUS       DASFRC010000270          878 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.273, whole genome shotgun sequence.
ACCESSION   DASFRC010000270 DASFRC010000000
VERSION     DASFRC010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 878)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 878)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..878
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.273"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(41..114)
                     /locus_tag="U1087_002214"
     tRNA            complement(41..114)
                     /locus_tag="U1087_002214"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(78..80),aa:Pro,seq:tgg)
     gene            complement(162..235)
                     /locus_tag="U1087_002215"
     tRNA            complement(162..235)
                     /locus_tag="U1087_002215"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(199..201),aa:Arg,seq:acg)
     gene            complement(254..337)
                     /locus_tag="U1087_002216"
     tRNA            complement(254..337)
                     /locus_tag="U1087_002216"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(301..303),aa:Leu,seq:taa)
     gene            complement(345..416)
                     /locus_tag="U1087_002217"
     tRNA            complement(345..416)
                     /locus_tag="U1087_002217"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(382..384),aa:Gly,seq:gcc)
     gene            complement(429..501)
                     /locus_tag="U1087_002218"
     tRNA            complement(429..501)
                     /locus_tag="U1087_002218"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(466..468),aa:Thr,seq:tgt)
     gene            complement(520..601)
                     /locus_tag="U1087_002219"
     tRNA            complement(520..601)
                     /locus_tag="U1087_002219"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(565..567),aa:Leu,seq:tag)
     gene            complement(605..677)
                     /locus_tag="U1087_002220"
     tRNA            complement(605..677)
                     /locus_tag="U1087_002220"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(642..644),aa:Lys,seq:ttt)
     gene            complement(743..815)
                     /locus_tag="U1087_002221"
     tRNA            complement(743..815)
                     /locus_tag="U1087_002221"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(780..782),aa:Asp,seq:gtc)
BASE COUNT          232 a          259 c          188 g          199 t
ORIGIN      
        1 acgctctagc cagctgagct acaccgccaa aataatataa tcgggaagac aggattcgaa
       61 cctgcgacac cttggtccca aaccaagtac tctaccaagc tgagctactt cccgatacta
      121 ttaaaaataa agctccccta acgtctccat taagcgagtg atgcacccta gaggattcga
      181 acctctaacc gcctgattcg tagtcaggta ctctatccag ttgagctaag ggtgctaact
      241 attataatct tcatgccgag gaccggaatc gaaccggtac gatgttgcca tcgcaggatt
      301 ttaagtcctg tgcgtctgcc agttccgcca ccccggcctc tcaaagcgaa cgacgggatt
      361 cgaacccgcg acccccacct tggcaaggtg gtgttctacc actgaactac gttcgcaatc
      421 tttcctaatg ccggctacat gacttgaaca cgcgaccctc tgattacaaa tcagatgctc
      481 taccaactga gctaagccgg ctaaattata tttctcctat gcgggttaag ggacttgaac
      541 ccccacgccc gaaagcgcca gatcctaaat ctggtgcgtc tgccaattcc gccaaacccg
      601 catatgactc gtgctgggct cgaaccagcg acccattgat taaaagtcaa ttgctctacc
      661 aactgagcta acgagtcgaa aatatgaagc aaactccgtt tgctctatct ccaatttcaa
      721 atagtctccc agactatttg aacggtcccg acgggaatcg aacccgcgat cttcgccgtg
      781 acagggcgac gtgataaccg ctacactacg ggacctatgg gagttaacgg gatcgaaccg
      841 ctgaccctct gcttgtaagg cagatgctct cccagctg
//
LOCUS       DASFRC010000271          864 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.274, whole genome shotgun sequence.
ACCESSION   DASFRC010000271 DASFRC010000000
VERSION     DASFRC010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 864)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 864)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..864
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.274"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(11..712)
                     /locus_tag="U1087_002222"
     CDS             complement(11..712)
                     /locus_tag="U1087_002222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756628.1"
                     /translation="MKTVGKFFAKKLASLMVLLLVLGLGIIWFRNSIFAWFQGIHKVQ
                     YEFVIKKFEAESKLVVAGAEVATTANQTFENNKLEEWPDWTEPITKLFVGREMSVDIP
                     VQTEFKLVLEGIEQSDVHIQNNTLTFKQPVLVEVDSQQHGQIKISNNSNGLLDKAVDA
                     FTSGQKAQEFLNEKSQEAIYKTSEEVLNDAERQEKVAAFAETALENLLNLNSEEKLEV
                     EIEVSDLNFQIVDKK"
BASE COUNT          248 a          184 c          142 g          290 t
ORIGIN      
        1 tttaaaaaaa ctatttctta tccacaatct ggaaattcaa gtcgctcact tctatctcaa
       61 cctcaagttt ttcttcggag ttcagattga ggaggttttc taaagccgtt tctgcaaaag
      121 cagcgacttt ttcctgacgt tctgcatcat tcaagacttc ctcacttgtc ttgtaaatgg
      181 cttcttggga tttttcattt agaaattcct gagccttttg tccagaggtg aaagcatcta
      241 ctgccttatc taaaagacca ttgctattat tgctaatttt gatttgacca tgctgttgag
      301 aatcaacttc gacaaggaca ggttgcttga atgtcaaggt gttattttga atgtgaacat
      361 ctgactgctc aattccttcc aagaccagtt tgaactccgt ctggacagga atatctacag
      421 acatttcccg tccaacaaag agcttggtaa taggctctgt ccagtctggc cattcttcta
      481 atttattgtt ttcaaaggtc tggttggcag tggttgctac ctcagctcct gccacaacca
      541 gtttactttc cgcttcaaac ttcttgataa caaattcata ctgaaccttg tggatacctt
      601 ggaaccaagc aaaaatacta tttctaaacc agataatgcc tagacctaaa accagtagca
      661 agaccataag gctagccaac tttttcgcga aaaactttcc aactgtcttc atacagttct
      721 ccttcatatt tgaattatcg gaacttgtcc tacaaccatt atatatatat atatatgctg
      781 tcaagtattt ttggcatttt tttgaacatt ttagaaaact cactttgaga agttaggagg
      841 ataaaaatct gacaaatttg acaa
//
LOCUS       DASFRC010000272          853 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.275, whole genome shotgun sequence.
ACCESSION   DASFRC010000272 DASFRC010000000
VERSION     DASFRC010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 853)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 853)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..853
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.275"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            90..371
                     /locus_tag="U1087_002223"
     CDS             90..371
                     /locus_tag="U1087_002223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008808933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HEM4756629.1"
                     /translation="MARKESMAERNFKMKKDIHPEYRTVVFMDTTTGYKFLSGSTKKS
                     NETVEFEGETYPLIRVEISSDSHPFYTGRQKFTQADGRVDKFNKKYGLK"
     gene            complement(474..>853)
                     /locus_tag="U1087_002224"
     CDS             complement(474..>853)
                     /locus_tag="U1087_002224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM4756630.1"
                     /translation="RTITLDPITVSILKKWEKTRQFLNFPQRVKPTDLVFPAETGNAH
                     SFDYINYNLRCILKKYDLPYITPHGFRHTHCSLLFEAGASIKEVQERLGHEDIKTTMN
                     IYAHVTENTKEKTAEKFAQFLGM"
BASE COUNT          276 a          154 c          166 g          257 t
ORIGIN      
        1 cgtactataa cttgaaaaaa tattaaaaaa ataggtaaaa agacttgcca taagaacaaa
       61 cttttggtaa acttaaatgg ttataatcta tggctcgaaa agagtccatg gcagaaagga
      121 attttaaaat gaaaaaagat atccatccag aatatcgcac tgttgtcttc atggacacaa
      181 ctactggcta caagttcctt agcggttcaa ctaagaaatc taacgaaaca gttgaattcg
      241 aaggtgaaac ttacccattg atccgtgtgg aaatttcatc agactcacac ccattctata
      301 ctggacgtca aaagttcact caagcagatg gacgtgtgga caagttcaac aaaaaatacg
      361 gtctcaaata atcagcgtta taaaatcgtt agaaacgttg atttcaagcc attcccgagc
      421 cgtgggagtg gttttctttt tggaatggta acggaaatgg taacggctga gcgttacatt
      481 cccaaaaatt gggcaaactt ttcagccgtt ttttcttttg tattttccgt aacgtgagcg
      541 taaatattca tagttgtttt aatatcttca tgccctaatc tttcttgtac ttccttaatc
      601 gatgccccag cttcaaataa taaactacaa tgagtatggc ggaaaccgtg gggcgttata
      661 taaggcaagt catatttttt cagaatacaa cgtagattat agtttatata atcaaaacta
      721 tgggcgttgc ctgtttctgc tggaaaaact aggtcagttg gtttcactcg ctgggggaag
      781 tttaaaaact gtctagtctt ttcccatttt ttcagaatag acacggtaat agggtcaagc
      841 gtgatagtgc gct
//
LOCUS       DASFRC010000273          846 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.276, whole genome shotgun sequence.
ACCESSION   DASFRC010000273 DASFRC010000000
VERSION     DASFRC010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 846)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 846)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..846
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.276"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            109..182
                     /locus_tag="U1087_002225"
     tRNA            109..182
                     /locus_tag="U1087_002225"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:143..145,aa:Arg,seq:tct)
     gene            complement(180..>846)
                     /locus_tag="U1087_002226"
     CDS             complement(180..>846)
                     /locus_tag="U1087_002226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1275 domain-containing protein"
                     /protein_id="HEM4756631.1"
                     /translation="RVFEGLRIACSLTFISGYLNAFTFVTQGGRFAGVQSGNVISLAY
                     FLAKGDFAQVVNFSIPILFFVFGQFFTYLARRYFEKQTWSWHFGSSVMMLVLILLTII
                     LSPIMPASFTIASLAFVASIQVETFRRLRGAPYANVMMTGNVKNAAYLWFKGLIEKDS
                     ELRKTGRNILLTIIGFMLGVIISTHLSFQFEEYALIGLILPVLYINYELWQEKRPTRG
                     RSK"
BASE COUNT          303 a          153 c          142 g          248 t
ORIGIN      
        1 tttagaacaa taactagtat aatacatgtg actttgtttg tcaatacatt ttttgatttt
       61 ttattgtatt gacagagtgc tttgtttaat gtaaaataaa atggttaagg ttccatagct
      121 cagctggata gagcattcgc cttctaagcg aacggtcgca ggttcgaatc ctgctggaat
      181 catttagacc tacctcgagt aggtcttttt tcttgccata attcataatt aatatataaa
      241 actggcaaaa tcagaccaat aagggcatat tcttcaaatt ggaaggatag gtgagtagat
      301 atgatgacac ctagcataaa ccctataata gtcaataaga tgtttctacc tgtttttcta
      361 agttctgaat ctttttcaat aagtccttta aaccagagat aagcagcatt tttgacattc
      421 cctgtcatca tcacattggc atacggagca cctcgtaacc ttctaaatgt ttctacttga
      481 atagaggcta cgaaggctag actagcaatt gtaaaagacg caggcataat aggtgagaga
      541 atgatagtta gtaaaataag aactaacatc attacactac taccaaagtg ccaagaccat
      601 gtttgttttt caaaatacct tcttgctaag taggtaaaaa attgtccgaa tacaaaaaat
      661 aaaatgggaa tggaaaaatt aactacctgc gcaaaatcac ctttagctaa aaaataagct
      721 agggaaataa catttccaga ttgtacgcca gcaaagcgac caccctgagt cacaaaagta
      781 aaggcattta aataaccact gataaacgtt aatgaacaag caattctcaa tccctcaaaa
      841 acacga
//
LOCUS       DASFRC010000274          834 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.277, whole genome shotgun sequence.
ACCESSION   DASFRC010000274 DASFRC010000000
VERSION     DASFRC010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 834)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 834)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..834
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.277"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            108..392
                     /locus_tag="U1087_002227"
     CDS             108..392
                     /locus_tag="U1087_002227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HEM4756632.1"
                     /translation="MKLELTAQSEADLKTGILELIENYLEARERVKPKLTGLITAQQL
                     KSELDIEYKTLQRWEKHGLGRYQPPIEDTKKIFYRVSDILKFLGVENGKN"
     gene            379..>834
                     /locus_tag="U1087_002228"
     CDS             379..>834
                     /locus_tag="U1087_002228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage replisome organizer N-terminal
                     domain-containing protein"
                     /protein_id="HEM4756633.1"
                     /translation="MAKTKIYFWLKIDKKFFDNIFIKRLKTIPGGYTMTVIYIRLMLE
                     SLESDCILYYEGYFENLKEELALKLDVSEDDIDMTMAYFTKCGLIQIDEDKNAELPQA
                     KALVQQETNQAAYMREYRKQQQEKKENLTMLTENLTALTTCKTEKEIEIE"
BASE COUNT          309 a          145 c          190 g          190 t
ORIGIN      
        1 agaacgactt gcaggagtgc taccgcttca acgacaatat gaccaagaac acaagcgtat
       61 tcacgcgcta ctgaccgcag acttgcaaga ctggaggaag tacagagatg aagcttgaat
      121 taaccgcaca gagtgaagca gacctaaaaa cgggcattct ggagcttata gagaactatc
      181 tggaagcgcg tgagagggtt aagccaaaac ttactggact gattacagcc caacagttga
      241 agagtgagct agacatagaa tacaagactt tgcaacggtg ggaaaagcac gggctgggac
      301 gataccaacc gccgatagag gatactaaga aaatcttcta cagggtcagt gatattctga
      361 aatttttggg ggtggagaat ggcaaaaact aaaatatatt tttggttgaa gattgataaa
      421 aaattttttg ataatatttt cattaagaga ctgaagacta ttccaggcgg ttacactatg
      481 acagtaatct atatccgtct aatgcttgaa agtcttgaaa gtgactgcat tctctactac
      541 gaaggttatt ttgaaaatct caaggaagaa ttggctttga agttggatgt atcggaagat
      601 gatattgata tgaccatggc atactttaca aaatgcggac taattcagat tgacgaagac
      661 aaaaacgcag aattaccaca ggccaaagcc ttggtacaac aagaaaccaa ccaagctgca
      721 tacatgcgag aatatcgaaa acagcaacaa gaaaaaaagg aaaatcttac aatgttaacc
      781 gaaaatctta cagcgttaac tacgtgtaag acagagaaag agatagagat agag
//
LOCUS       DASFRC010000275          829 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.278, whole genome shotgun sequence.
ACCESSION   DASFRC010000275 DASFRC010000000
VERSION     DASFRC010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 829)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 829)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..829
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.278"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..453)
                     /locus_tag="U1087_002229"
     CDS             complement(<1..453)
                     /locus_tag="U1087_002229"
                     /inference="COORDINATES: protein motif:HMM:NF017102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HEM4756634.1"
                     /translation="MTTVFEVINFAKDLANRGQGVDYDGWYGNQCVDLPNWICGKFFG
                     KALWGNAIDLIKSAKRHGFEVHYMPTSERPRPGAIFVKNYWAGDGINYGHTGLIIGVS
                     GNTVQTIEQNLVGNLSVGGPAQYSSQQISNLVGWFYPPYSDSTAVATQS"
     gene            complement(450..785)
                     /locus_tag="U1087_002230"
     CDS             complement(450..785)
                     /locus_tag="U1087_002230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin"
                     /protein_id="HEM4756635.1"
                     /translation="MNLQKIIIGSATGILAIVAGMIVHEVKKYLIAKGGKRAVEITEI
                     LARNAVNAVEQITKLDQDKHVDKLDMAKRRVTGQLAKYNIYMTDTQLETFIESAVKQM
                     NDAWKETDK"
BASE COUNT          219 a          202 c          164 g          244 t
ORIGIN      
        1 tgactgcgtt gccactgcag tagagtcgct ataaggtgga taaaaccagc cgacaagatt
       61 gctgatttgc tgactagaat actgagcagg accaccgacg gacaaattac ctaccaggtt
      121 ctgctcgatt gtttggacgg tattgccact aacaccgata atcaatccgg tgtgcccata
      181 gttgataccg tcacctgccc agtaattctt gacaaagata gcccctggac gtggacgttc
      241 tgaggtaggc atataatgca cctcgaatcc gtgtcgcttt gctgatttaa tcaaatcaat
      301 ggcgttgccc caaagagctt tgccgaaaaa cttgccacaa atccagttag gtaggtctac
      361 acattgatta ccgtaccaac catcatagtc tacaccttga ccacgattgg caaggtcttt
      421 ggcgaagttg ataacttcaa atactgttgt catttgtcag tctccttcca ggcatcgttc
      481 atttgcttca ctgctgattc gataaaggtc tctaactgtg tatcagtcat atagatgttg
      541 tatttagcaa gctgacctgt tacacgacgt ttggccatat ctagcttatc gacgtgctta
      601 tcttggtcta atttggtaat ctgctcaact gcgttgacgg cattccgcgc cagaatctct
      661 gtaatttcga ctgctcgctt accacctttg gcaatcagat acttcttgac ttcatggaca
      721 atcataccag caacgatagc taagatacct gtagcagacc caataataat tttctgtaag
      781 ttgattcata tcaattctcc ttcttcaatg gcaactcaca atatatgcc
//
LOCUS       DASFRC010000276          780 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.279, whole genome shotgun sequence.
ACCESSION   DASFRC010000276 DASFRC010000000
VERSION     DASFRC010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 780)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 780)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.279"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            411..>780
                     /locus_tag="U1087_002231"
     CDS             411..>780
                     /locus_tag="U1087_002231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756636.1"
                     /translation="MEQYFKQFEERLQVAEEKLDILSEWHIAKRHKGATEIAEECRTA
                     VTSLWMEFYRLSEAYKEAEADHEEFYQANVDYLLGELRQHDNEVLELAIKIHGERPNY
                     LLFDYLDKEQRIFENPDNLAT"
BASE COUNT          288 a          135 c          180 g          177 t
ORIGIN      
        1 aaaaaatgac taaaacacaa atcagcaggc aagccgtaag ggttttagta aatgttttat
       61 agctagatta tagcataatc aaggcatttt gaccagacag aggggcgcta acccttaaaa
      121 ctggagcaga aaagtattag gtgctggtat cgccattagg ttgcaatgga cctaacaacc
      181 taaaccaccc taagaaaatc acacacagct aggctattat tttgggacag gcttacacga
      241 ccacagggcg acctggtaag tctggggcgg gcaaccgctg gggatagtct aggctaacaa
      301 agaaatgtat aaagaaaaaa gtatagtaaa gaaatcaagc cttttacaaa caggataaag
      361 cccactaggg ccattacaca gacacaataa aaaaacgagg taagaactac atggaacagt
      421 attttaaaca atttgaagaa cggttacaag ttgcagaaga aaaattggac attctgagcg
      481 agtggcatat agccaaacgt cacaagggag ctactgaaat tgctgaagag tgtaggacag
      541 cagttacatc gctttggatg gagttttaca gactatcaga ggcatataaa gaggctgagg
      601 cggaccatga agagttttat caagcgaatg tggattattt gttaggggaa ttaagacaac
      661 acgataatga ggtgctagaa cttgcgataa aaattcacgg agaacgcccc aactatcttt
      721 tatttgatta tctggataaa gaacagcgga tttttgaaaa tcctgacaat ttagcaacag
//
LOCUS       DASFRC010000277          778 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.280, whole genome shotgun sequence.
ACCESSION   DASFRC010000277 DASFRC010000000
VERSION     DASFRC010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 778)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 778)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.280"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            14..778
                     /locus_tag="U1087_002232"
                     /pseudo
     CDS             14..778
                     /locus_tag="U1087_002232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014407787.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ISAs1 family transposase"
BASE COUNT          222 a          142 c          194 g          220 t
ORIGIN      
        1 ttttctttta tccatagaag agcacaaaga ggagtacaac agccgtcaag catggaaaat
       61 tcgttatccc ttatccacta ttctgtttct agttttcgct tgtcaattgg caggggttga
      121 aacgtggaaa gagatggaag atttcataga aatgaacgag tctgttttgg gagaatacgt
      181 tgacttgagt gtcggctgtc tttctcatga caccttggaa cgtgttgtga gtatggtcaa
      241 tccagatttc ttaaaggaac tgaaactgtc cttcgaagct agttcggaaa caactgattt
      301 ttcaaaattg attgccgttg acggaaaaac gattcggggg aaccgaggga aataccaatc
      361 tcctactcat attgtcactg cttatgatgg tggtaatcgg attagccttg ggcaggtagc
      421 tgttgaggat aaaagtaatg aaatcacagc cattcctcgc ctcttgtgtc agctagacct
      481 tcgtaagagt gttgtcacga ttgatgccat gggcacctag acagacattg cggatgtgat
      541 tatcagcggt aagggtgatt attgcttggc agtcaaagga aatcaaggca atctccatga
      601 ggatattgac ctctatttta gtgacgccaa attgttatct acgttgacag agaaaggctg
      661 tcattatcag accattgaaa aggcacgcag tcagattgag gtgagggact actgggtttc
      721 tcacgatgtg aaatggctga gccaacgaca tccgaaatgg aaaaaacttc gtgggatt
//
LOCUS       DASFRC010000278          748 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.281, whole genome shotgun sequence.
ACCESSION   DASFRC010000278 DASFRC010000000
VERSION     DASFRC010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 748)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.281"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            152..334
                     /gene="rpmF"
                     /locus_tag="U1087_002233"
     CDS             152..334
                     /gene="rpmF"
                     /locus_tag="U1087_002233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000290417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HEM4756637.1"
                     /translation="MAVPARRTSKAKKNKRRTHYKVAAPTVKFDETTGDYSRSHRVSL
                     KGYYKGRKIAKAASAE"
     gene            350..499
                     /gene="rpmG"
                     /locus_tag="U1087_002234"
     CDS             350..499
                     /gene="rpmG"
                     /locus_tag="U1087_002234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001265622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEM4756638.1"
                     /translation="MRVNITLEHKESGERLYLTSKNKRNTPDRLQLKKYSPKLRKHVI
                     FTEVK"
     gene            complement(593..>748)
                     /locus_tag="U1087_002235"
     CDS             complement(593..>748)
                     /locus_tag="U1087_002235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HEM4756639.1"
                     /translation="FCFINTSLNVIREFVGHSEDGKEIVKIYLHVIQKGKRKIEQAML
                     DLAEIII"
BASE COUNT          278 a          136 c          113 g          221 t
ORIGIN      
        1 acaaattttg acaaattttt tcaaaaaatc tgtcaagtaa ctttacttta caaaaaattt
       61 ttgttatact gttaaagttg acgaaagtca tacgcactat ttttagatta aaaaagggct
      121 tggccctgac atttaatgga ggaagaaaga aatggcagta cctgcacgtc gcacttcaaa
      181 agcgaagaaa aacaaacgtc gtactcacta taaagtagca gctccaactg tgaaatttga
      241 tgaaactact ggagattact cacgttcaca ccgtgtatct ttgaaaggat actacaaagg
      301 acgtaaaatt gccaaggctg cttcagctga ataatagaag ggagatacca tgcgcgtaaa
      361 tattacactt gaacacaaag aatctggtga gcgtttgtac cttacttcaa aaaacaaacg
      421 taacactcca gaccgtcttc aattgaaaaa atactcacca aaattgcgta agcacgtgat
      481 ttttactgag gtaaaataag acaacataca gaaagcctat gaaatcaacg tttcaaaggc
      541 ttttttcttt tgtttttgac aaaataactg aattttaact gattaaaata aatcaaatga
      601 taatttctgc taaatctagc atagcctgtt caatcttacg ttttcctttt tgtattacat
      661 gaagatagat tttcactatc tccttaccat cctcagaatg tcctacaaat tctcgaataa
      721 cattcaaact agtattgata aaacaaaa
//
LOCUS       DASFRC010000279          738 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.282, whole genome shotgun sequence.
ACCESSION   DASFRC010000279 DASFRC010000000
VERSION     DASFRC010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 738)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.282"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..636)
                     /locus_tag="U1087_002236"
     CDS             complement(<1..636)
                     /locus_tag="U1087_002236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011680908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM4756640.1"
                     /translation="MEQLNLITNLLRIKDKNIVITDEYDMGTHLELHGHLDYTAPKCP
                     SCKGQMAKYDFQKASKIPYLETAGYPLLIRLKKRRFKCKECGKMVVAETPLVKKNHQI
                     SVAVNQKIAQLLIENQAMTHIAHRLSISTSSVIRKLNEFKFETDWNTLPEVMSWDEYG
                     FKKGKMSFIAQDFDSLKVISILDGRTQATIRNHFLRYSRQARNRVKVITMDM"
BASE COUNT          183 a          134 c          165 g          256 t
ORIGIN      
        1 catgtccata gtgatgactt taacgcggtt tctagcctgt ctggagtagc gtaggaagtg
       61 gtttctaatc gtggcttgcg tgcgtccatc gaggatagag atgactttta gcgagtcgaa
      121 atcctgagcg atgaaactca tttttccctt cttgaagcca tattcatccc agctcatcac
      181 ctcaggtaag gtattccaat ctgtttcaaa cttgaactca ttgagttttc gaataactga
      241 tgatgttgag atagatagcc tgtgtgcaat atgtgtcatt gcttgatttt cgatgagtaa
      301 ttgggcgatt ttctggttaa ccgcgacaga aatttggtgg ttcttcttga caagaggtgt
      361 ttcagcgaca accattttcc cacattcttt acacttgaac cgacgctttt taaggcggat
      421 aaggagtgga taaccagctg tttctaggta gggaattttg gaggcttttt ggaaatcgta
      481 tttggccatt tgtcccttgc aggaagggca tttaggggct gtataatcca agtgaccgtg
      541 gagttctaag tgagttccca tatcatattc atcagtgata acaatatttt tgtctttaat
      601 tctgagaaga tttgtgataa gatttagttg ttccatatga accctttcta atgtgagttt
      661 cgtcgctttt cattataggt catatgggac ttttttctat actcaaaaaa gctccataat
      721 ttccatggtg gatttacc
//
LOCUS       DASFRC010000280          702 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.283, whole genome shotgun sequence.
ACCESSION   DASFRC010000280 DASFRC010000000
VERSION     DASFRC010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 702)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.283"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..>702
                     /locus_tag="U1087_002237"
     rRNA            <1..>702
                     /locus_tag="U1087_002237"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          171 a          157 c          216 g          158 t
ORIGIN      
        1 ccttgtgtta tggctactct aacccggata ggttatccct atcggagaca gtgtctgacg
       61 ggcagtttga ctggggcggt cgcctcctaa aaggtaacgg aggcgcccaa aggttccctc
      121 agaatggttg gaaatcattc gcagagtgta aaggtataag ggagcttgac tgcgagagct
      181 acaactcgag cagggacgaa agtcgggctt agtgatccgg tggttccgta tggaagggcc
      241 atcgctcaac ggataaaagc taccctgggg ataacaggct tatctccccc aagagttcac
      301 atcgacgggg aggtttggca cctcgatgtc ggctcgtcgc atcctggggc tgtagtcggt
      361 cccaagggtt gggctgttcg cccattaaag cggcacgcga gctgggttca gaacgtcgtg
      421 agacagttcg gtccctatcc gtcgcgggcg taggaaattt gagaggatct gctcctagta
      481 cgagaggacc agagtggact taccgctggt gtaccagttg tcttgccaaa ggcatcgctg
      541 ggtagctatg tagggacggg ataaacgctg aaagcatcta agtgtgaaac ccacctcaag
      601 atgagatttc ccataacttt atgttagtaa gagccctgag agatgatcag gtagataggt
      661 tggaagtgga agtgtggcga cacatgtagc ggaccaatac ta
//
LOCUS       DASFRC010000281          698 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.284, whole genome shotgun sequence.
ACCESSION   DASFRC010000281 DASFRC010000000
VERSION     DASFRC010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 698)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.284"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            49..456
                     /locus_tag="U1087_002238"
     CDS             49..456
                     /locus_tag="U1087_002238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HEM4756641.1"
                     /translation="MHILIAPDSFKESLSATKVAEAIKKGFSKVYPQAGYDLIPLGDG
                     GEGTVESLMQALSLDGTQTWVTGPFGDKIKVSYAVKDDLPEFPFENICVAFPIIASVE
                     SLEDTLQKAEKNLVRTAEQVARILQLGGQQRWN"
     gene            447..677
                     /locus_tag="U1087_002239"
     CDS             447..677
                     /locus_tag="U1087_002239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756642.1"
                     /translation="MELVKSMAIILFIFICLAKLVFVRRLSKKERGTETNVIKANGAM
                     FFFNEKNERGRLLGILCLTCIIFTLIFILLYR"
BASE COUNT          226 a          114 c          146 g          212 t
ORIGIN      
        1 tgtccttttc ctaattcaaa taactataat ataaaggagg ttagtatcat gcatattctc
       61 attgctccgg attcatttaa agagtctctt tcagctacaa aggttgctga agcgattaaa
      121 aaaggatttt ctaaggttta cccacaagca gggtatgact taattcccct aggagatggt
      181 ggcgaaggga cagttgagag tctaatgcag gccttatcct tggatggaac ccagacttgg
      241 gtgacaggtc catttggaga taaaatcaag gtttcctatg cggttaaaga tgatcttccc
      301 gagtttcctt ttgaaaatat ctgcgtcgct tttccgataa ttgcaagcgt tgaaagtttg
      361 gaggacacgc ttcaaaaagc agaaaaaaac ctggtccgca cggcagagca ggtggcaaga
      421 attcttcagt taggaggcca acaaagatgg aattagtgaa atctatggct attatcttat
      481 ttatttttat ttgtcttgca aagctagtat tcgttaggag actttccaaa aaagaaagag
      541 gaacggaaac gaatgtaata aaggcaaatg gagcaatgtt ctttttcaat gaaaaaaatg
      601 aaagaggcag attgctagga atcctttgtc taacctgtat tatttttact ttaatattta
      661 tactgcttta tcgataaata agtctaacca aataaatt
//
LOCUS       DASFRC010000282          697 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.285, whole genome shotgun sequence.
ACCESSION   DASFRC010000282 DASFRC010000000
VERSION     DASFRC010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 697)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.285"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            230..697
                     /locus_tag="U1087_002240"
     CDS             230..697
                     /locus_tag="U1087_002240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM4756643.1"
                     /translation="MTIRKARQSDIPILNELLQDILQVHHQARPDIFKSAGQKFSEAE
                     LVALLENPDKPIFVFELEGQVVGHLFCELSTATGDVLEPVKTLFIDDLCVANSARGQR
                     IGEQLYEFALSYAKEQGCHNLTLDVWADNAGAVRFYERQGMKPQKFRMEQIIE"
BASE COUNT          224 a          116 c          141 g          216 t
ORIGIN      
        1 cattttgcac aaaagaggga gaagctttag taattttcta cactacacat tctcgtttta
       61 agacaacaaa aaaccagcct tggccagctg attttttagg agatttatga aaaattttag
      121 gatacaccta tagtatactc gaattttcag attcttcatc ggtctgtaga cctattttgt
      181 taaaaaatga acatgtgcta taataataaa aactcaaaag gagagtatta tgacaatccg
      241 taaagctaga caatctgaca ttccgatatt aaatgaattg cttcaagata ttttacaggt
      301 gcatcaccaa gcacgaccag atatttttaa aagtgcaggt caaaaatttt ctgaggctga
      361 attagtagca cttttagaaa atccagataa gcctattttt gtctttgagt tagagggaca
      421 agtggttggg catctttttt gtgaattatc taccgcaaca ggcgatgttt tagaaccagt
      481 taaaaccttg tttattgatg atttgtgtgt agccaattcg gcgcgtggtc aaagaattgg
      541 cgagcagctt tatgaatttg ctctttccta tgctaaggag cagggttgcc acaatcttac
      601 cttggatgta tgggctgaca atgcaggagc tgtccgtttt tatgaacgcc aaggaatgaa
      661 accacaaaag ttccgtatgg agcaaataat agagtga
//
LOCUS       DASFRC010000283          696 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.286, whole genome shotgun sequence.
ACCESSION   DASFRC010000283 DASFRC010000000
VERSION     DASFRC010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 696)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 696)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.286"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(29..>696)
                     /locus_tag="U1087_002241"
     CDS             complement(29..>696)
                     /locus_tag="U1087_002241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014635840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM4756644.1"
                     /translation="VSDKAPDITVFKRLVDKALFTRSYDQLAYLVEAEKQKEAVHSQE
                     SSEYLTYLACIVDFHHYHKEDIAIVRMEELSHRISKKSSFYLDVCNSLVNFYALTSRD
                     EDLDGLYEGISEKLSHLDISNTESFHKYIKIRYNHAHYLFKRKRQSQAIDELTDLIET
                     LRAKKSCYLLADTLCLIANVGEGFLSKDEILSYYREAECLFKFFGPQNSYLSLKEYLL
                     KDI"
BASE COUNT          228 a          144 c          100 g          224 t
ORIGIN      
        1 tttttataaa agaatctata cttgattatt aaatatcttt taatagatat tctttcaagc
       61 taagataact attttgcgga ccaaaaaatt tgaatagaca ttccgcttct cgatagtagg
      121 agagaatctc atcttttgac aaaaatccct ctccgacatt tgcgattaaa caaagcgtat
      181 cagccaaaag ataacaactc ttcttagctc gcaatgtttc aattaggtct gtcaattcat
      241 caattgcctg tgactgcctc ttccttttaa aaagatagtg agcgtgattg tagcgaatct
      301 tgatatactt atgaaaactc tctgtgtttg atatatccaa gtggctaagt ttttctgaaa
      361 tcccctcata caaaccgtct aaatcctcat ctcgagaagt caaggcataa aaattaacca
      421 agctattgca tacatccaga taaaaactag atttcttact gattcgatga ctaagttctt
      481 ccatacgtac aattgcaata tcctccttat gataatgatg aaagtccact atacaagcca
      541 gataagttaa atattcacta ctttcctgcg aatgaacagc ttctttctgc ttctctgcct
      601 ctacaagata agccagttga tcataggaac gagtgaacaa agctttgtcc accaatcgtt
      661 taaataccgt aatatcaggc gctttatctg atacac
//
LOCUS       DASFRC010000284          694 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.287, whole genome shotgun sequence.
ACCESSION   DASFRC010000284 DASFRC010000000
VERSION     DASFRC010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 694)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.287"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..169)
                     /locus_tag="U1087_002242"
     CDS             complement(<1..169)
                     /locus_tag="U1087_002242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM4756645.1"
                     /translation="MSEKEVYFSEAEPADAAAFIDFMNQVARETDYLVMDETGFRFSV
                     DEMETIFEAGIE"
     gene            complement(162..638)
                     /gene="tsaE"
                     /locus_tag="U1087_002243"
     CDS             complement(162..638)
                     /gene="tsaE"
                     /locus_tag="U1087_002243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HEM4756646.1"
                     /translation="MTNYWGYGIIKDMYSQNENKLIAIGERIGKACKPNQVLVLSGDL
                     GAGKTTLTKGLAKGLKIEQMIKSPTYTIVREYEGTMPLYHLDVYRIGDDPDSIDLDDF
                     LYGGGLTVIEWGELLDVSLFDDYLLIRIEKEGDGRRLTVESHGAQSSDLAKEFQNV"
BASE COUNT          205 a          179 c          102 g          208 t
ORIGIN      
        1 tttcgattcc tgcttcgaag atggtctcca tttcatcaac actaaatcga aaaccagtct
       61 catccatgac cagataatcc gtttctctag caacttgatt cataaaatca ataaaagctg
      121 ctgcatcagc tggttcagct tcactaaaat acacttcttt ttcagacatt ttggaactcc
      181 ttcgctaaat cgctactttg agctccatga gattcgactg tcaatcgtcg accatctccc
      241 tctttctcta tacgaatgag caaatagtca tcaaatagac tgacatccag taattctccc
      301 cactcgataa ccgttagacc tcctccatag agaaaatcat ccaaatcaat cgagtcaggg
      361 tcatctccaa ttcgataaac atctaagtga tagagtggca tggtcccctc atactctcgc
      421 acaatcgtat aagtaggact cttaatcatc tgttcaattt ttaaaccctt ggccaaaccc
      481 ttggtcagag ttgttttccc agcacccaaa tcccctgata atactagaac ttgatttggc
      541 ttacaggctt ttccaattct ctcaccaatg gcaatcaatt tattttcatt ctgactatac
      601 atgtctttaa ttataccata gccccagtag tttgtcatag gtctactgga aattgtagac
      661 aagtcgacag aaaaaatcgc aagccagagc ctgc
//
LOCUS       DASFRC010000285          679 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.288, whole genome shotgun sequence.
ACCESSION   DASFRC010000285 DASFRC010000000
VERSION     DASFRC010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 679)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.288"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..>679
                     /locus_tag="U1087_002244"
     CDS             <1..>679
                     /locus_tag="U1087_002244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEM4756647.1"
                     /translation="PTVEDEQVKEYIRMRTDHKVALKKIKQQILAFCLRHDFRYTEGS
                     SNWTQKHVRWLRSLNPDGLYAEILTEYLLTYEKLVDQIERYDARIEQLGQSDSYQEKV
                     SRLSCFIGIKTLTALSIVTEIGDFNRFATAQHFASYLGLTPSENSSGDKERRGAITKA
                     GNSHVRRLLIEAAQSLAKGTIGYKSKELKRRQSGNRVEVIAYADKANERLRRRYRTLV
                     LGKNKKQN"
BASE COUNT          226 a          129 c          154 g          170 t
ORIGIN      
        1 tcctactgtt gaggatgaac aagtcaaaga atatatccgc atgagaacag accacaaagt
       61 ggctctgaag aaaatcaaac aacaaattct tgccttctgt ctccgacatg attttcgcta
      121 taccgaggga agcagtaatt ggacacagaa acatgtccgc tggctccgtt ccctaaatcc
      181 tgatggactt tacgcagaga ttttgacaga atatctattg acctatgaga aattagtaga
      241 tcaaatagaa cggtatgatg cacgaattga gcaactgggt caaagcgaca gttatcaaga
      301 gaaggtctca cggctttctt gctttattgg cattaaaaca ctaactgctc tttccattgt
      361 gacagaaatc ggtgatttta atcgctttgc gacagctcaa cattttgctt cttatcttgg
      421 gctaactcct agcgaaaatt ctagcggcga caaggagaga agaggtgcta tcaccaaagc
      481 tgggaatagc catgtgagac gacttctgat agaagctgca caatcattgg ctaaggggac
      541 gattgggtat aaatccaaag aattgaaaag gagacaaagt ggaaaccgag tggaggtgat
      601 tgcttatgcg gataaggcta atgaacgctt aagaagacgt tatcgcacac ttgttctagg
      661 aaaaaataag aaacaaaat
//
LOCUS       DASFRC010000286          678 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.289, whole genome shotgun sequence.
ACCESSION   DASFRC010000286 DASFRC010000000
VERSION     DASFRC010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 678)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 678)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..678
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.289"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            49..>678
                     /locus_tag="U1087_002245"
     CDS             49..>678
                     /locus_tag="U1087_002245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756648.1"
                     /translation="MAIFKGTRIQTVDGTNAVVPVTVTNGFSSVRLYRTRADRTASEE
                     ETDSGFTITPSTGRFSGTASATYNGVGVYSRSLSFTDSSGRATPLQDFKIWVMDATVN
                     NTSLTNRLYNHTPSQQEVLDAVTVLTGGSTIGYEKKLVSPIPTTNGTATVRITTRQGV
                     YKDVHVPITYRANQVPTVTVSDQFVDRGGKTAINVSTGVTVTDVEDDRYP"
BASE COUNT          203 a          145 c          160 g          170 t
ORIGIN      
        1 agtgcaagta cgtcagctag tgccccgacc gtaactggca ttaacaatat ggccatcttt
       61 aagggtacaa ggattcagac agtggatggg acaaatgcag ttgttcccgt tactgtaacg
      121 aatggttttt caagtgttcg tctctacaga acgcgagcag atagaacggc aagtgaagaa
      181 gaaacggatt caggttttac aatcaccccg tcaaccggga gattttcagg aactgcaagt
      241 gcgacctata acggggttgg tgtgtattca agaagtttga gttttacgga ttcctctgga
      301 cgtgcaacac cgcttcagga cttcaaaatc tgggtgatgg atgcgacagt aaacaacacc
      361 tcactaacga atcgtttgta taatcatact ccgtctcaac aggaagtatt ggatgcagta
      421 acagttttaa ctggtggaag tacgatcggt tacgaaaaga aattagtatc acctattcct
      481 acgacaaatg gtacagcaac agttcgtatc accacacgtc aaggcgtcta taaggatgtt
      541 cacgttccaa ttacctaccg agctaaccaa gtacctacag tgacagtttc tgaccaattc
      601 gttgaccgtg gtggaaaaac agcgattaac gtctccactg gtgttactgt gacggatgtg
      661 gaagatgaca gataccca
//
LOCUS       DASFRC010000287          673 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.290, whole genome shotgun sequence.
ACCESSION   DASFRC010000287 DASFRC010000000
VERSION     DASFRC010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 673)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.290"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..632
                     /locus_tag="U1087_002246"
     CDS             <1..632
                     /locus_tag="U1087_002246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939803.1"
                     /note="similar to YegS from E. coli; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HEM4756649.1"
                     /translation="FHQEHYFINIAAAGTLTELTYSVPSQLKTMFGYLAYVVKGAELL
                     PQVQFTPVRVEHDEGVFEGSVSMIFVALTNSIGGFEQIVPDAKLDDGNFTLLMVKTGN
                     LFEILHLIRQVLDGGKHIESDLVEYIKTKSLSIENLNPDNRLLLNLDGEFGGEAPVRL
                     YNLSNHIEFFADTDLVSDHAITLDTDQMNREDMAKRFIEETDHIDEAIK"
BASE COUNT          210 a          119 c          135 g          209 t
ORIGIN      
        1 gttttcatca agaacattat tttatcaata ttgctgcggc aggtacactt acggaattga
       61 cctacagtgt tcccagtcaa cttaagacca tgtttggcta tttggcctat gtagtaaaag
      121 gagcagagct cctgccacaa gtacaattta cacctgttcg tgtagagcat gacgagggag
      181 tatttgaagg ctcggtttca atgatttttg ttgccttaac caattcaatt ggtggttttg
      241 aacagattgt tcccgatgct aaattagatg atggtaattt taccttattg atggttaaaa
      301 cagggaattt atttgaaatt ctgcatctga ttcgtcaagt cttagacggt ggcaaacaca
      361 ttgagagtga tttagttgaa tacataaaaa ccaagagcct atctatcgaa aatctgaacc
      421 cagataaccg tctactgctc aatctagatg gagagtttgg tggggaagcc cctgttcgtc
      481 tgtacaacct atcaaaccat atagagtttt tcgcagatac agatctggtt tctgaccatg
      541 caatcactct tgatactgat cagatgaatc gagaagatat ggccaaacga ttcattgaag
      601 aaacagacca tattgatgaa gctattaaat aggaagaaaa gatgaaatac tcttttcttt
      661 ttattttaca aaa
//
LOCUS       DASFRC010000288          644 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.291, whole genome shotgun sequence.
ACCESSION   DASFRC010000288 DASFRC010000000
VERSION     DASFRC010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 644)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.291"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..520)
                     /locus_tag="U1087_002247"
     CDS             complement(<1..520)
                     /locus_tag="U1087_002247"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756650.1"
                     /translation="MFVFKGTRIQREYGKNTLFPVYARASEGFSSIRLYRTGDYREIT
                     EEETDSGFTIDQSIGEFSGTPSAIYNEIGGYPRALIYTDSSGRTSPPQHFRIFVVDTA
                     VDNTLLTNRLYNHTPSEEEVLDAVTVLDAGYLLDSEKRLMSPIPTTDGTATVRIVIHE
                     GVYKDVDVPITYQ"
BASE COUNT          177 a          140 c          134 g          193 t
ORIGIN      
        1 cttggtaggt aattggaacg tcaacatcct tatagacccc ttcatgtatg acgatacgaa
       61 ctgttgctgt accatctgtc gtaggaatag gtgacattaa tcgcttttcg gaatctaaca
      121 aatatccagc atctaaaact gttactgcat ccaatacttc ctcttcagac ggagtatgat
      181 tatacaaacg attcgttagt aaggtgttgt ctactgccgt atctaccaca aagattctga
      241 agtgctgagg cggtgatgta cgtccagagg aatccgtata aatcaaagct cttggatagc
      301 caccaatctc gttatagatc gcacttggag ttcctgaaaa ttccccgatt gactggtcga
      361 ttgtaaaacc tgaatccgtt tcttcttcag tgatttctct atagtctccc gttctgtaga
      421 gacgaatact tgaaaaacct tcactagctc gtgcataaac gggaaaaagt gtatttttcc
      481 catactctct ctgaatcctt gtacccttaa agacgaacat attgctagtg ctagatcgga
      541 acccgggtat agttgatgca gaggtacttg cgctggttgt agacgcatca attatcggcg
      601 agaaaagtgc ctggttcaag tttgtgtaat cgagcccttc agat
//
LOCUS       DASFRC010000289          631 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.292, whole genome shotgun sequence.
ACCESSION   DASFRC010000289 DASFRC010000000
VERSION     DASFRC010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 631)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.292"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            27..497
                     /locus_tag="U1087_002248"
     CDS             27..497
                     /locus_tag="U1087_002248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEM4756651.1"
                     /translation="MEFEKVYASVKGIVNKARKEFYIKLWDRDDWEQEGMMTLFELLE
                     DQPWLVDEQVQLYCYFKVKFRNRIKDRIRKQESQKRKFDRMPHEDIHELSHAIQSPGL
                     INDELLMLRGALRDYRKNLSNDQLDKYEKLISGQCFNGRREMIRDLQIHLKDFR"
BASE COUNT          246 a           90 c          128 g          167 t
ORIGIN      
        1 aaccatcaac aaaaggagat taagaaatgg aattcgaaaa agtgtacgca agcgtcaaag
       61 gcattgtaaa caaggctcga aaagagtttt acattaaact atgggatcga gatgattggg
      121 aacaagaagg aatgatgacc ttgtttgaat tgttggaaga tcaaccgtgg ctagttgatg
      181 aacaagttca attatattgt tatttcaaag tcaagttcag aaatcgaatc aaggatcgta
      241 tccgcaaaca ggaaagtcaa aaacgcaagt ttgaccgtat gccacatgaa gatattcacg
      301 aattatctca cgcaatacaa tcaccgggat tgataaacga tgaattatta atgttgagag
      361 gtgccttgag agattatcga aaaaatctga gcaatgatca acttgataaa tacgaaaaat
      421 taattagcgg acaatgtttt aatggtcgcc gtgaaatgat acgtgattta caaattcatt
      481 tgaaagactt tcgctaaagc tagttactaa catcacgtta atcgaattaa gaaattgggc
      541 agaagcacca taaaaagttc tgttcagttt ctttttatat aggttatagc aaagagaaga
      601 aggaatagga gaaaaaacaa attatctaca t
//
LOCUS       DASFRC010000290          622 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.293, whole genome shotgun sequence.
ACCESSION   DASFRC010000290 DASFRC010000000
VERSION     DASFRC010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 622)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.293"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..544)
                     /locus_tag="U1087_002249"
     CDS             complement(<1..544)
                     /locus_tag="U1087_002249"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756652.1"
                     /translation="MVIFKGTSIQTEDGRNAVSPVAALNPNGFSSIRLYRTGANGLEE
                     ETDSGFKLDQSTGVLTGVLTGVFSGTISVTYNEVGVYSRSLIYTDSASGYAYPPVEFK
                     IRVIDTTVNNSLTNRLHKHIPSEEEVLNAVTVLTGGEFVYYNMKVMSPIPATDGTATV
                     RIITEQGVYKDVQVPITYRPN"
BASE COUNT          168 a          145 c          122 g          187 t
ORIGIN      
        1 ggttaggtcg gtaggtaatt ggaacttgaa catccttata gacgccttgt tctgtgatga
       61 tacgaactgt tgctgtacca tctgtcgcag gaataggtga cattactttc atattgtaat
      121 agacaaactc tccaccagtt aaaactgtta ctgcattcaa tacttcctct tcagacggaa
      181 tatgcttatg caaacgattc gttagtgagt tgtttactgt cgtatctatc acccggattt
      241 tgaactccac aggcgggtat gcatatccag aggcggaatc cgtataaatc aaacttcttg
      301 aatacacacc aacctcgtta taggtcacac ttatagttcc tgaaaatacc ccggttaata
      361 ccccggttaa taccccggtt gactggtcga gtttaaaacc tgaatccgtt tcttcttcaa
      421 gaccatttgc tcccgttctg tagagacgaa tacttgaaaa accattcgga tttagtgcag
      481 caacgggaga aactgcattt ctcccatcct ctgtctgaat acttgtaccc ttaaagatga
      541 ccatatcggt attgatagct aggaacccgg cactttcggt aaaacttggt gtatagctag
      601 tcgttgccgt caaaccttcc gc
//
LOCUS       DASFRC010000291          612 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.294, whole genome shotgun sequence.
ACCESSION   DASFRC010000291 DASFRC010000000
VERSION     DASFRC010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 612)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.294"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            105..488
                     /locus_tag="U1087_002250"
     CDS             105..488
                     /locus_tag="U1087_002250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002962841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM4756653.1"
                     /translation="MKIEHVAIYTQDLEGMRNFFENYFNATSNQLYHNLKTSFKSYFL
                     TFEDGARLEIMTRDDVVDKPSQLNYLGLIHLAFSLGSEEAVDELTERLVAAGYLLLSG
                     PRITGDGYYESCVLGFDDIQIELTV"
BASE COUNT          179 a          106 c          130 g          197 t
ORIGIN      
        1 gacttgctat ctttcacaaa cttcttcaat tttttatatt tttaggagtt tgtctaggtt
       61 ctgagacggc actttgccgt tttctattag ggaaaggttt gaaaatgaaa atagaacatg
      121 tagcaatcta cactcaggat ttggaaggta tgcgtaattt ctttgaaaac tacttcaatg
      181 ccacatccaa tcagctctac cataatctaa aaaccagttt caagtcctat tttcttacct
      241 ttgaagacgg ggctcgtttg gaaattatga ccagagacga tgtggtcgac aaaccaagtc
      301 aactcaatta tctaggactt attcatttag cctttagtct agggagtgag gaagctgtgg
      361 atgagttaac agagcgactt gttgctgcag gctacttgct tcttagtgga ccacgaataa
      421 ctggggacgg ctactatgaa tcgtgtgtgt tgggatttga tgatatacaa attgaattaa
      481 cagtgtaatg ttggcaagta atactgctag gtcaatgttt taacggatag gctagcaagt
      541 ctcattcatt agcaatttcc ttactgttac ggaaaaaact gcaatggtga tcgatgtaaa
      601 cgtttgctaa ac
//
LOCUS       DASFRC010000292          612 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.295, whole genome shotgun sequence.
ACCESSION   DASFRC010000292 DASFRC010000000
VERSION     DASFRC010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 612)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.295"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..330
                     /locus_tag="U1087_002251"
     CDS             <1..330
                     /locus_tag="U1087_002251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM4756654.1"
                     /translation="VETSEKQMPSVVNENAVTPEKQMANKEKENIETSKKQIPVNENN
                     QNGTVEENSNTKPTTEKTDKQETSTFKTETAKQILPVTGEKGSLWLLTSGIIGLAIAL
                     FTRKRKL"
BASE COUNT          223 a          117 c          111 g          161 t
ORIGIN      
        1 gttgaaacct ctgaaaaaca gatgccgagt gttgtgaacg aaaatgccgt aacacctgaa
       61 aagcaaatgg ctaataaaga gaaggaaaat atcgaaacct ctaaaaaaca gatacctgtt
      121 aatgagaaca accaaaatgg tacagtcgaa gaaaattcaa atactaaacc aacaactgaa
      181 aaaacagaca agcaggagac ttcaacattt aaaaccgaaa ctgctaagca aatcttacca
      241 gtaactggtg agaaaggaag tttatggtta ttgacaagtg gtattatcgg gcttgcaatt
      301 gcgttattta cacgtaaacg taaattataa taatcaccta actgatacag ttctaaagga
      361 tgagaacaag cccagtactg cttctctaga ttcgcatcaa catctcgcac aacttacaga
      421 gtgtgacaga cttaaaatca accacaaagc cctcgctaag cttatacatc tagcgagggc
      481 tttatattta ttttttataa tcttttagtt ttcggttagt atagccattt cgtttgcttt
      541 tagtactcgc ttcaaaggtt ctccgaacct ttgaaggctg gagataagtc gaagcaagtt
      601 tgcctcaata gc
//
LOCUS       DASFRC010000293          607 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.296, whole genome shotgun sequence.
ACCESSION   DASFRC010000293 DASFRC010000000
VERSION     DASFRC010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 607)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 607)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.296"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
BASE COUNT          185 a          109 c          117 g          196 t
ORIGIN      
        1 actagtgcac aaatcataaa atacgtatca aggctttcag ctattcttta aataattact
       61 atattaagta tagaaaaggc tacttgtaat tctgtttgtg tctgcgtatt gtcgtaagct
      121 gcctgtgtgg tatgccagcc aatagttaag ggctttttta gttttatcat aacaaaaagg
      181 taggatataa gtttattctg ccttttattg ttattctacg atgttacgga aaaacgccaa
      241 ccccagcagg tcggcgcgtg gaaatataca aattgattga catataacct ataatggggg
      301 tataatcatg gtgtaaagaa ttgttgtgag gacaattcta gcactaaatc aaaaaagccc
      361 ccaacgtgcc agcgttgagg gtttttgttt gcccctgttt ggggttagtc gtcgttatcg
      421 tctaaataat acttaactac ttcagtcaag atattaacca ataacggcgc tagaatactt
      481 gtgaggataa gtctagcaac taaatcacct cccttcagta aattcaaggg gggcttgtat
      541 atcttatcag ataatttatt ttgttgtcaa attctccccg cttacacatg gtaacatgta
      601 agcaacc
//
LOCUS       DASFRC010000294          593 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.297, whole genome shotgun sequence.
ACCESSION   DASFRC010000294 DASFRC010000000
VERSION     DASFRC010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.297"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..506
                     /locus_tag="U1087_002252"
     CDS             <1..506
                     /locus_tag="U1087_002252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HEM4756655.1"
                     /translation="LSDQQILVLDGSALTLVAKQNRKNFPCKQVILTPHQKEWERLSA
                     IPVADQTSQRNLEALQSFQENTILVAKSSATQILKNQPNQVTPIGAGGPYQATGGMGD
                     TLAGMIAGFAVQFPHVQLYERILVATYLHSYIADQLAQDYYLVKPTDISRNIQKTMLQ
                     FQTQTTA"
BASE COUNT          207 a          142 c           97 g          147 t
ORIGIN      
        1 atttatctga ccagcagatt ttagttcttg atggctcagc ccttacctta gtcgcaaagc
       61 aaaacagaaa gaacttcccg tgtaaacaag tcatcctgac accccaccag aaagaatggg
      121 aacggttatc agccattccg gttgctgacc aaacaagcca aagaaatctt gaagccctgc
      181 aatcttttca agaaaataca atccttgtag ctaaaagttc tgctactcaa atcctaaaaa
      241 accagccaaa ccaagtcacc ccaattggag ctggtggtcc ctaccaagca acaggaggta
      301 tgggagatac tcttgcaggt atgattgcag gatttgctgt acaatttccc catgttcaac
      361 tatatgaaag aatccttgta gcaacctacc tccactccta tattgctgac caactggctc
      421 aagattatta tcttgtaaag ccaactgata tctcaagaaa catccaaaag acaatgcttc
      481 aatttcaaac acaaacaacc gcctaatcaa tgattaagcg gtcttttata taacaaactc
      541 gtgattaaag cctgacaaat ggtagaaaat gatactcaat gcaaatcaaa agt
//
LOCUS       DASFRC010000295          584 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.298, whole genome shotgun sequence.
ACCESSION   DASFRC010000295 DASFRC010000000
VERSION     DASFRC010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 584)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.298"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..>584
                     /locus_tag="U1087_002253"
     CDS             <1..>584
                     /locus_tag="U1087_002253"
                     /inference="COORDINATES: protein motif:HMM:NF019202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1542 domain-containing protein"
                     /protein_id="HEM4756656.1"
                     /translation="TEKSIAKAEVKAAAEDALQAIDENANLTDDEKAKAKADVYVELS
                     KAEKAIDKATTADAIDNATLVGEKAFATAELEAAADDAKKAIDANTHLTDDQKQAAKD
                     AVDAELAKAKEAVVAAKTADEVDAATLVGEKAIAKEEIKAAADDAKKAIDANSNLTDD
                     EKATAKAAVDDEVAKANEAIDKAATADAVDTATL"
BASE COUNT          220 a          124 c          148 g           92 t
ORIGIN      
        1 aacagaaaaa tcaattgcta aggcagaagt caaagccgct gcagaagatg cattgcaagc
       61 tatcgatgaa aatgctaact tgacagacga tgagaaagca aaagcgaaag cagatgtcta
      121 cgttgaattg agcaaggctg aaaaagcaat cgataaagca accacagcgg atgctatcga
      181 caacgcaacg cttgtaggtg aaaaagcatt cgctactgca gaacttgaag cagcagccga
      241 cgatgctaag aaagccatcg atgccaacac tcacttgaca gacgaccaga agcaagctgc
      301 taaggatgca gtcgatgctg aattggcaaa agctaaggaa gccgttgtag cagcgaaaac
      361 agctgatgaa gttgatgcag caactcttgt aggtgagaaa gcaatcgcta aagaagaaat
      421 caaggcagcc gcagacgatg ctaagaaagc tatcgatgct aacagcaact tgacagacga
      481 cgagaaagca accgctaagg cagctgtaga tgatgaagta gcgaaagcta acgaagcaat
      541 cgacaaggca gcaacagccg atgcagtaga cacagctaca ctcg
//
LOCUS       DASFRC010000296          580 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.299, whole genome shotgun sequence.
ACCESSION   DASFRC010000296 DASFRC010000000
VERSION     DASFRC010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 580)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.299"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(1..509)
                     /locus_tag="U1087_002254"
                     /pseudo
     CDS             complement(1..509)
                     /locus_tag="U1087_002254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007520189.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
BASE COUNT          193 a           91 c           67 g          229 t
ORIGIN      
        1 acggattttt tttgaaacat gactgaaata tcttaaatat aaatcacttt caaatattcc
       61 ctcctttatt tcagtaacaa cttcttccca aggataatca attacttttt tataggttgt
      121 atcgaatgaa atcaaagatc tgattaacct aaaactatgc tatgtttcag agttagattt
      181 gttagttttt gttttcttaa ataatttgaa aatgaatatt tttgaggtat tgataagcat
      241 agatttcttc tgaattgagt tgggacatac gctcctttta gtagattttc aaaaaattta
      301 ttactttcaa acccgtcatt tgtaacatca atgtagagaa taaacgcttc tttatcatga
      361 ctgtaaactt gttgacaaac ctctttgatt aactcggttt taccactacc acttaagcca
      421 ttaataatat ataaactatt tttatcatta ctggaaaatt taaaatgctg ttttaattct
      481 tctatttcag tatcgcgacc gtaatacata aaacatctcc taccgataac aatttattat
      541 cagtagtata ccataatcta catttgtttt atagatttta
//
LOCUS       DASFRC010000297          571 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.300, whole genome shotgun sequence.
ACCESSION   DASFRC010000297 DASFRC010000000
VERSION     DASFRC010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 571)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.300"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..>571
                     /locus_tag="U1087_002255"
     CDS             <1..>571
                     /locus_tag="U1087_002255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000564846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISAs1 family transposase"
                     /protein_id="HEM4756657.1"
                     /translation="QVAVEDKSNEITAIPRLLRQLDLRKSVVTIDAMGTQTDIADVII
                     RGKGDYCLAVKGNQGTLHEDIDLYFSDAKLLSKLTEKGCHYQTIEKARSQIEVRDYWV
                     SHDVKWLSQRHPKWKKLRGIGMTKNTIDKYGVVTEEVRYFILSFKGDVQTFSQVVRGH
                     WSVESLHWLLDVVYREDKNQTLDKQAAFNL"
BASE COUNT          171 a          101 c          144 g          155 t
ORIGIN      
        1 caggtagctg ttgaggataa aagcaatgaa atcacagcca ttcctcgcct cttgcgtcag
       61 ctagaccttc gtaagagtgt tgtcacaatt gatgccatgg gcacccagac agacattgcg
      121 gatgtgatta taaggggcaa aggagattat tgcttggcag tcaaaggaaa tcaaggcact
      181 ctccatgagg atattgacct ttattttagt gatgccaaat tattatctaa gttgacagag
      241 aaaggctgtc attatcagac cattgaaaag gcacgcagtc agattgaggt gagggactac
      301 tgggtttctc acgatgtgaa atggctgagc caacggcatc caaaatggaa aaaacttcgt
      361 gggattggga tgactaagaa taccattgat aaatatggtg tcgtcacgga agaagtgcga
      421 tactttatcc tcagtttcaa gggggatgtg caaacttttt ctcaggttgt tcgtggtcat
      481 tggtcggttg agagcctaca ttggttgtta gatgtggttt accgagaaga taagaaccaa
      541 accttagata aacaagctgc tttcaattta a
//
LOCUS       DASFRC010000298          533 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.301, whole genome shotgun sequence.
ACCESSION   DASFRC010000298 DASFRC010000000
VERSION     DASFRC010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 533)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.301"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..>533
                     /locus_tag="U1087_002256"
     CDS             <1..>533
                     /locus_tag="U1087_002256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012677188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM4756658.1"
                     /translation="AKIVLDRFHIVQHLSRAMNRVRIQIMNQLDRKSQEYRALKRYWK
                     LIQQDSRKLSDKRFYRPMFRMHLTNKEILEKLLSYSDELRQHYELYQFLLFHFQEKNS
                     VHFFDLIEQEIANVNPIFQTVFKTFLKDKDKVLNAMELPYSNAKLEATNNLIKVIKRN
                     AFGFRNFENFKKRILIA"
BASE COUNT          178 a          117 c           85 g          153 t
ORIGIN      
        1 gccaaaatcg tccttgatcg ctttcatatt gtgcaacacc tcagccgtgc tatgaaccgt
       61 gtccgcattc aaatcatgaa tcaactcgat agaaaatcgc aggaatatcg tgctttgaaa
      121 cgctactgga aattgataca acaagatagc cgtaaactca gcgataaacg attttatcgc
      181 cctatgtttc gcatgcactt gactaacaag gaaattctag aaaaactcct atcctactca
      241 gacgaactcc gacagcacta tgaactctat caatttctct tgttccattt ccaagagaaa
      301 aactcagttc atttctttga ccttatcgaa caggaaatag ccaatgttaa tcctattttc
      361 cagacggtat ttaagacatt tctaaaggat aaagacaagg ttttaaacgc catggaattg
      421 ccttattcaa acgccaaact ggaagctacc aacaatctca tcaaagtcat taagagaaat
      481 gcctttggtt tcaggaactt tgaaaatttt aaaaaacgga ttttgattgc ttt
//
LOCUS       DASFRC010000299          527 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.302, whole genome shotgun sequence.
ACCESSION   DASFRC010000299 DASFRC010000000
VERSION     DASFRC010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 527)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 527)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.302"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            310..>527
                     /locus_tag="U1087_002257"
     CDS             310..>527
                     /locus_tag="U1087_002257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017648441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec-dependent serine-rich glycoprotein
                     adhesin"
                     /protein_id="HEM4756659.1"
                     /translation="MKHKRFNKDFDEVGRKSRVKMHKSGKNWIRTVMSQLSLLRVIRG
                     KGQETVSVPLVDSSERLESQRYQYLKAI"
BASE COUNT          180 a           78 c           89 g          180 t
ORIGIN      
        1 cacctaattt tatcaatttg agaaccctaa agttattgtg ggagcgggtt actgacagca
       61 taactcaaga ttgtcctttt tctaattgaa atcaccatat ttcttatata caagcacttc
      121 acttgtgaat ataacttcct taagaagcaa aaattaattt gtttgaaata ttctatcaat
      181 tatggtaaaa tgaattcatt gtactcatga tatatatata tatacaacgt ttttatggtt
      241 ctctttgtaa cttgcgtagg atatatagta tatattttta ggcattaaat ttatatacta
      301 ggagtcaaca tgaaacataa acgatttaac aaagattttg atgaagtcgg acgtaagagt
      361 cgtgttaaaa tgcataaatc aggtaaaaac tggattcgga ctgtcatgtc tcagctcagt
      421 cttttgcgtg ttattcgagg aaaaggacag gaaacagttt cagtacctct tgtagatagt
      481 tcagaacgat tagaaagtca acgttaccag tacctgaaag ctatatt
//
LOCUS       DASFRC010000300          512 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.303, whole genome shotgun sequence.
ACCESSION   DASFRC010000300 DASFRC010000000
VERSION     DASFRC010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 512)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 512)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.303"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..>512
                     /locus_tag="U1087_002258"
     rRNA            <1..>512
                     /locus_tag="U1087_002258"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          145 a          115 c          142 g          110 t
ORIGIN      
        1 aagcttctag cgatgtatca tactctaccc gtaccgcaaa ccgacacagg tagtcgaggc
       61 gagtagcctc aggtgagcga gagaactctc gttaaggaac tcggcaaaat gaccccgtaa
      121 cttcgggaga aggggtgctg acttaaagtc agccgcagtg aataggccca agcaactgtt
      181 tatcaaaaac acagctctct gctaaatcgt aagatgatgt atagggggtg acgcctgccc
      241 ggtgctggaa ggttaagagg agggtttagc gcaagcgaag atctgaattg aagccccagt
      301 aaacggcggc cgtaactata acggtcctaa ggtagcgaaa ttccttgtcg ggtaagttcc
      361 gacccgcacg aaaggcgtaa tgatttgggc actgtctcaa cgagagactc ggtgaaattt
      421 tagtacctgt gaagatgcag gttacccgcg acaggacgga aagaccccat ggagctttac
      481 tgcagtttga tattgagtat ctgtaccaca tg
//
LOCUS       DASFRC010000301          506 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.304, whole genome shotgun sequence.
ACCESSION   DASFRC010000301 DASFRC010000000
VERSION     DASFRC010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 506)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 506)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.304"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..>506
                     /locus_tag="U1087_002259"
     CDS             <1..>506
                     /locus_tag="U1087_002259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HEM4756660.1"
                     /translation="YEQDPEKVELFLKELNNLSHLTPVYIDETGFETCFHREYGRSLK
                     GQLIKGKVSGRRYQRISLVAGLINGALIAPMTYKDTMTSGFFEAWFKTFLLPTLAKPS
                     VIIMDNAKFHRMSKLKDLCEEQGHRLLPLPPYSPEYNPIEKIWAHIKKHIRRVLTNCD
                     TFLEVLSS"
BASE COUNT          163 a           96 c          102 g          145 t
ORIGIN      
        1 tatgaacaag accctgaaaa agtagaactg ttccttaaag aattgaataa cttaagccac
       61 ttgactcctg tttatattga cgagacaggg tttgagacat gttttcatcg agaatatggt
      121 cgctctttga aaggtcagtt gataaaaggt aaggtctctg gaagaagata ccagcggata
      181 tctttagtgg caggtctcat aaatggtgcg cttatagccc cgatgacata caaagatact
      241 atgacgagtg gctttttcga agcttggttc aaaacattct tactacccac tttagctaaa
      301 ccatctgtta tcatcatgga caatgcaaag tttcatagga tgagtaagct aaaagattta
      361 tgcgaggagc agggacatag acttttacca cttcctcctt actcaccgga atataatccc
      421 attgagaaaa tatgggctca catcaaaaaa cacatcagaa gagtattgac aaattgcgat
      481 acttttcttg aggtactttc gtcctg
//
LOCUS       DASFRC010000302          495 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.305, whole genome shotgun sequence.
ACCESSION   DASFRC010000302 DASFRC010000000
VERSION     DASFRC010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 495)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 495)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..495
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.305"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            57..>495
                     /locus_tag="U1087_002260"
     CDS             57..>495
                     /locus_tag="U1087_002260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1694 domain-containing protein"
                     /protein_id="HEM4756661.1"
                     /translation="MNDLNTTILQKASSETRLNPDEQRLYMGTYRERVVLLVSFDDLS
                     SEVVGNKFDTICQKLANSYSPLFLKLSPALSDKQQISLLKIAQNFGITTAIIDEKIGQ
                     SPYALVFHTNHAVDNEEVSLESIFPNLISKPEEKKEDVKPSFWK"
BASE COUNT          171 a          112 c           80 g          132 t
ORIGIN      
        1 gaaataatgt aaacgccttc cttttcaaag ttaactgagt atgttatact gaaactatga
       61 acgatttaaa tactaccata ctacagaaag cctctagcga aacacgattg aatccagatg
      121 aacagcgtct atacatggga acctatcgtg aacgggttgt cctgctcgtt tcctttgacg
      181 atttgagtag tgaagtcgtc ggaaataagt tcgatacaat ttgccaaaaa ctagcaaaca
      241 gctactctcc tctattcctc aaactctcgc cagccctgtc tgacaagcaa caaatttcac
      301 tactaaaaat tgctcagaac ttcggcatta ctaccgctat catcgatgaa aaaatagggc
      361 aatctcccta cgcacttgtc tttcacacaa atcacgctgt ggataatgaa gaagttagct
      421 tagaatccat atttccaaat cttatctcaa aaccagaaga aaaaaaggaa gatgtaaaac
      481 cttccttctg gaaaa
//
LOCUS       DASFRC010000303          489 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.306, whole genome shotgun sequence.
ACCESSION   DASFRC010000303 DASFRC010000000
VERSION     DASFRC010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 489)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 489)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.306"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..>489
                     /locus_tag="U1087_002261"
     CDS             <1..>489
                     /locus_tag="U1087_002261"
                     /inference="COORDINATES: protein motif:HMM:NF019202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1542 domain-containing protein"
                     /protein_id="HEM4756662.1"
                     /translation="SYEALYLAHPQNKVAVFDSAKLTTSEKEQVKQNIYDANPNLSTG
                     VAPAIKAIDISDKGEATVTFDDDTVVKVSSATLTYEDKATARSNAKAEIEKEATEKSD
                     AIEASNLTEEEKTARLTEVQDANDRANNAIDKAATTEDLTEAISDGTAAIKAVSTTNT
                     IKT"
BASE COUNT          184 a           98 c          103 g          104 t
ORIGIN      
        1 tcctatgagg cactgtatct tgcgcatcca caaaacaagg tagctgtatt tgatagtgca
       61 aagttaacaa cttccgagaa agaacaggtc aagcaaaata tatatgatgc aaaccctaat
      121 ttaagtacag gggttgcgcc agccatcaaa gcgattgaca tatccgataa aggtgaagct
      181 actgtaacat ttgatgatga taccgtagtt aaagtttcat ccgcaactct cacctacgaa
      241 gacaaggcta ctgctagaag caatgccaaa gcagaaattg aaaaagaggc aacggaaaag
      301 agtgatgcca tcgaggcctc aaatctcact gaagaagaga aaacagccag actgacggaa
      361 gttcaagatg caaacgaccg agctaataat gcaattgata aagctgctac tactgaagac
      421 ttaactgagg ctatttcgga tggtacagca gcgattaaag cagttagcac aactaatact
      481 ataaaaaca
//
LOCUS       DASFRC010000304          473 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.307, whole genome shotgun sequence.
ACCESSION   DASFRC010000304 DASFRC010000000
VERSION     DASFRC010000304.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 473)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 473)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.307"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..339
                     /locus_tag="U1087_002262"
     CDS             <1..339
                     /locus_tag="U1087_002262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM4756663.1"
                     /translation="AKKVVTNHVDEEGNPIAPQEDGTTPKRQISGYEYVRTVVDEEGN
                     TTHIYRKLSNKPTTPEKETPAKPQAGKTASGKAQLPNTGEASSVAGALGTAMLVATLA
                     FARKRRRNED"
BASE COUNT          159 a           98 c           98 g          118 t
ORIGIN      
        1 gctaagaaag ttgtgactaa ccacgttgat gaagaaggta accctattgc tccacaagag
       61 gatgggacaa caccaaaacg tcaaatttca ggttacgagt atgtgcgtac tgtagttgat
      121 gaagaaggta acacgacaca tatttatcgc aaactttcta ataaaccaac aacacctgag
      181 aaggaaactc ctgcaaaacc tcaagcaggt aaaaccgctt caggtaaagc tcaattgcca
      241 aatactggtg aggcttcatc tgtggcaggt gcgcttggta cagcaatgct tgtcgcaaca
      301 cttgcgtttg caagaaaacg tcgtcgtaac gaagattagt caaaattctt tatacagact
      361 ttattccccc atatagaaag tataagaatt gtacgtaaca tgcaggattg cctttccgaa
      421 aaaatgaggc tgtgcaaaaa gtccagagtt acatcttaga gttcgctcca ttt
//
LOCUS       DASFRC010000305          472 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.308, whole genome shotgun sequence.
ACCESSION   DASFRC010000305 DASFRC010000000
VERSION     DASFRC010000305.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 472)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 472)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.308"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..415)
                     /locus_tag="U1087_002263"
     CDS             complement(<1..415)
                     /locus_tag="U1087_002263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family ligand binding domain-containing
                     protein"
                     /protein_id="HEM4756664.1"
                     /translation="MKIQPEFYVFNNRSYVDFYPIQFGMEACKPLHSFGPTMKQHYLF
                     HYIISGSGTFYDTSDQREYHLTAGQGFLISPDAICSYEADEKDPWTYIWLEFDGLKTE
                     HFLRQAGLSKEQPIFSQREMPTSSPVYHEMKQILAL"
BASE COUNT          126 a           78 c          126 g          142 t
ORIGIN      
        1 ggagcgcgag aatttgtttc atttcatggt agacagggct agaggtgggc atttctcgtt
       61 gtgaaaagat aggttgttct ttcgagagcc ctgcctgtct gagaaaatgc tcagttttca
      121 gaccgtcaaa ttcaagccag atataggtcc aggggtcctt ttcgtctgct tcgtagctac
      181 agatggcgtc tggggagata aggaagccct gtcctgcggt taggtggtat tcacgttggt
      241 cggaggtatc gtaaaaagta cctgaaccag agatgatgta gtgaaacagg tagtgttgtt
      301 tcatagttgg gccgaatgag tgaagtggct tacaggcttc catgccaaat tggatggggt
      361 aaaaatctac ataggatctg ttattaaaga cgtaaaattc aggttgtatt ttcatcgtat
      421 tctccatacc aaaagtgtaa aggcttacaa ttagtatagc atatttatat gt
//
LOCUS       DASFRC010000306          467 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.309, whole genome shotgun sequence.
ACCESSION   DASFRC010000306 DASFRC010000000
VERSION     DASFRC010000306.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 467)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 467)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..467
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.309"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(249..>467)
                     /locus_tag="U1087_002264"
     CDS             complement(249..>467)
                     /locus_tag="U1087_002264"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756665.1"
                     /translation="ADVLADVEAEVLALVDAEVLADVDAEVLALVDADVLALADTELD
                     IKLLSVTSKRYVSSVLAPAESVTVTVTK"
BASE COUNT          137 a          114 c           99 g          117 t
ORIGIN      
        1 gatgattacg ttccaactcc ctactaccca gataaccaac cacctgtagt ggaggtttct
       61 gagcaatccg ttgaccgtgc tggaaaaaaa acgattgacg tctccactgg tgttgctgtg
      121 atgcatctga gatatgacat agacccttct gcaaccactg ttatctataa ggtagaggat
      181 ttacaagatg atattgttta tcaaggaagc aatccgaaag tcccagtaga gattttagta
      241 agaggaatct attttgtaac tgtaacagtg acagattccg ccggtgctag cactgaggaa
      301 acgtatcgtt tagatgttac tgacagtaat tttatatcta actcagtatc agccagcgca
      361 agtacgtccg cgtcaaccag cgcaagtact tcagcatcga cgtcagcaag cacctctgca
      421 tcaaccagcg caagtacctc agcctcaaca tcggcaagca cgtccgc
//
LOCUS       DASFRC010000307          455 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.310, whole genome shotgun sequence.
ACCESSION   DASFRC010000307 DASFRC010000000
VERSION     DASFRC010000307.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 455)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 455)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.310"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..>455
                     /locus_tag="U1087_002265"
     CDS             <1..>455
                     /locus_tag="U1087_002265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEM4756666.1"
                     /translation="FYQNLTEDIVRAKNRLHKVLQVTFPELETILSTPTGEQYGNLVV
                     AFPCKDFVLDLSKDELSESIRQSTSKRISDKRVAYLAEKLIALANQSYCAVKKTSPML
                     EEVRYYAQELLRLSERRKAVLDQMVELAQPLPEYDILLSIPGIAETTAT"
BASE COUNT          130 a          109 c           95 g          121 t
ORIGIN      
        1 ttctatcaga acttaactga ggacattgtt cgggctaaaa accgcctaca caaggtccta
       61 caggtcactt tcccagagtt ggagactatc ttatcaacgc caactgggga acaatacggg
      121 aacttagtcg tagcctttcc ttgcaaggac ttcgttcttg atttaagcaa ggacgaactc
      181 tcagagagca tccgtcagtc cacttcaaaa cgcatatctg acaagcgtgt ggcttactta
      241 gctgagaaac ttatagcact agctaatcag tcttattgtg ccgttaagaa aacctctcca
      301 atgctggaag aggtccgtta ttatgctcag gaattgctca gactttctga acgcaggaaa
      361 gctgtcctag accaaatggt ggaactagct caacctttac cagaatatga cattctgctt
      421 tctattcctg gtatcgctga gacgactgca acaag
//
LOCUS       DASFRC010000308          424 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.311, whole genome shotgun sequence.
ACCESSION   DASFRC010000308 DASFRC010000000
VERSION     DASFRC010000308.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 424)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 424)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.311"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(<1..>424)
                     /locus_tag="U1087_002266"
     rRNA            complement(<1..>424)
                     /locus_tag="U1087_002266"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT           88 a          130 c           92 g          114 t
ORIGIN      
        1 ttacaacaga gctttacgat ccgaaaacct tcttcactca cgcggcgttg ctcggtcagg
       61 gttgccccca ttgccgaaga ttccctactg ctgcctcccg taggagtctg ggccgtgtct
      121 cagtcccagt gtggccgatc accctctcag gtcggctatg tatcgatgcc ttggtgagcc
      181 gttacctcac caactagcta atacaacgca ggtccatctc atagtgaagc aattgctcct
      241 ttcaagtatc taccatgcgg taaatactgt tatgcggtat tagctatcgt ttccaatagt
      301 tatcccccgc tatgaggcag gttacctacg cgttactcac ccgttcgcaa ctcatccgtc
      361 tagtgcaagc accagacttc agcgttctac ttgcatgtat taggcacgcc gccagcgttc
      421 gtcc
//
LOCUS       DASFRC010000309          420 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.denovo.312, whole genome shotgun sequence.
ACCESSION   DASFRC010000309 DASFRC010000000
VERSION     DASFRC010000309.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 420)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 420)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.denovo.312"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
BASE COUNT          171 a           66 c           54 g          129 t
ORIGIN      
        1 atttttttga aaaaacatac aaaaaacaaa gaaaaaataa tttattacat taccctgtat
       61 aagggataaa ttgattttag tagtgatttg cagattgtaa cttatttaaa attgaacatc
      121 ctccaacttt agatttttag aaacgcataa actactccta tctagcgata aatcggagaa
      181 gaaatatttc ctaacgaatg atagaaaagt tctttaaata taacgtagaa cctgtatttg
      241 ataacaaatg tttctaacta aatactattc acaaacctct atcactctta tgtgggtata
      301 tgagttttat cctattatta ctcagataag actaggagta aaaccgttcc attagcaatt
      361 cgtcccacaa tcacctaaaa cattataaac acaaaatgga agagagaaag aactagacag
//
LOCUS       DASFRC010000310         2668 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.guided.215, whole genome shotgun sequence.
ACCESSION   DASFRC010000310 DASFRC010000000
VERSION     DASFRC010000310.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2668)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2668)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2668
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.guided.215"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            371..2290
                     /gene="tet(O)"
                     /locus_tag="U1087_002267"
     CDS             371..2290
                     /gene="tet(O)"
                     /locus_tag="U1087_002267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032490535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance ribosomal protection
                     protein Tet(O)"
                     /protein_id="HEM4756667.1"
                     /translation="MKIINLGILAHVDAGKTTLTESLLYTSGAIAEPGSVDKGTTRTD
                     TMNLERQRGITIQTAVTSFQWEDVKVNIIDTPGHMDFLAEVYRSLSVLDGAVLLVSAK
                     DGIQAQTRILFHALQTMKIPTIFFINKIDQEGIDLPMVYQEMKAKLSSEIIVKQKVGQ
                     HPHINVTDNDDMEQWDAVIMGNDELLEKYMSGKPFKMSELEQEENRRFQNGTLFPVYH
                     GSAKNNLGIRQLIEVIASKFYSSTPEGQSELCGQVFKIEYSEKRRRFVYVRIYSGTLH
                     LRDVIKISEKEKIKITEMCVPTNGELYSSDTACSGDIVILPNDVLQLNSILGNEMLLP
                     QRKFIENPLPMLQTTIAVKKSEQREILLGALTEISDGDPLLKYYVDTTTHEIILSFLG
                     NVQMEVICAILEEKYHVEAEIKEPTVIYMERPLRKAEYTIHIEVPPNPFWASVGLSIE
                     PLPIGSGVQYESRVSLGYLNQSFQNAVMEGVLYGCEQGLYGWKVTDCKICFEYGLYYS
                     PVSTPADFRLLSPIVLEQALKKAGTELLEPYLHFEIYAPQEYLSRAYHDAPRYCADIV
                     STQIKNDEVILKGEIPARCIQEYRNDLTYFTNGQGVCLTELKGYQPAIGKFICQPRRP
                     NSRIDKVRHMFHKLA"
     gene            2342..2515
                     /locus_tag="U1087_002268"
     CDS             2342..2515
                     /locus_tag="U1087_002268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine-rich KTR domain-containing protein"
                     /protein_id="HEM4756668.1"
                     /translation="MMKCEWILCPVCGSKTRNKIRKDTVLENYPLYCPKCRQERLIKV
                     DNLKITVIKEPDA"
BASE COUNT          871 a          436 c          599 g          762 t
ORIGIN      
        1 ataaacagat gattagtggc agggggaaat cctgccgctt tttctgcttt agtttgtcag
       61 cttgacaaat aaagggttaa ggaatataat tagattcagt attatacaag gagttaataa
      121 atatgcggca aggtattctt aaataaactg tcaatttgat agtgggaaca aaaagtagca
      181 gtcccgtttc acttttaata tggggcttgg ttttttgtac ccagtttaaa aatgctttta
      241 tcatgtaatt ttatatgccc gaaaacatat aagtgttttg gggctattgg agttatttac
      301 ccagtgatag gagtatttat cactgggtat ttttatgccc ttttttgggt gttgatagga
      361 ggaaaatcac atgaaaataa ttaacttagg cattctggct cacgttgacg caggaaagac
      421 aacattaacg gagagtttat tgtataccag tggtgcaatt gcagaaccag ggagcgtaga
      481 taaaggcaca acaaggacag atacaatgaa tttggagcgt caaaggggaa tcactatcca
      541 gacagcagtg acatcttttc agtgggagga tgtaaaagtc aacattatag atacgccagg
      601 ccatatggat tttttggcgg aagtataccg ttctttatcc gtattagacg gagcagtatt
      661 attagtttct gcaaaggatg gcatacaggc acagacccgt atactgtttc atgcactaca
      721 gacaatgaag attccgacaa tttttttcat caataaaatt gaccaagagg ggattgattt
      781 gccaatggta tatcaagaaa tgaaagcaaa gctttcttcg gaaattatag tgaagcaaaa
      841 ggttgggcag catccccata taaatgtaac ggacaatgac gatatggaac agtgggatgc
      901 ggtaattatg ggaaacgatg aactattaga gaaatatatg tcagggaaac cgtttaaaat
      961 gtcagaactg gaacaggaag aaaacaggag attccaaaac ggaacgttat ttcccgttta
     1021 tcacggaagt gctaaaaaca atctggggat tcggcagctt atagaagtga ttgccagtaa
     1081 gttttattca tcaacgcctg aaggtcaatc tgaactatgc gggcaggttt ttaagattga
     1141 atattcagag aaaaggcggc gttttgttta tgtgcgtata tatagcggaa cattgcattt
     1201 gagggatgtt attaaaatat ctgaaaaaga gaaaataaaa atcacagaga tgtgtgttcc
     1261 gacaaacggt gaattatatt catccgatac agcctgctct ggtgatattg taattttacc
     1321 aaatgatgtt ttgcagctaa acagtatttt ggggaacgaa atgctgttgc cgcagagaaa
     1381 atttattgaa aatcctctcc ctatgctcca aacaacgatt gcagtaaaga aatctgaaca
     1441 gcgggaaata ttgcttgggg cacttacaga aatttcagat ggcgaccctc ttttaaaata
     1501 ttatgtggat actacaacgc atgagattat actttctttt ttggggaatg tgcagatgga
     1561 agtcatttgt gccatccttg aggaaaaata ccatgtggag gcagaaataa aagagcctac
     1621 tgttatatat atggaaagac cgcttagaaa agcagaatat accatccaca tagaagtccc
     1681 gccaaatcct ttctgggctt ctgtcgggtt gtccatagag ccgctcccta ttggaagcgg
     1741 agtgcagtat gaaagcagag tttcacttgg atatttaaat caatcgttcc aaaatgcggt
     1801 tatggagggg gttctttatg gctgcgagca ggggctgtat ggatggaaag tgacagactg
     1861 taaaatctgt tttgaatatg gattgtatta tagtcctgta agtacccccg cagactttcg
     1921 gctgctttcc cctatcgtat tggagcaggc tttaaaaaaa gcaggaacag aactattaga
     1981 gccatatctc cactttgaaa tttatgcacc gcaggaatat ctctcacggg cgtatcatga
     2041 tgctccaagg tattgtgcag atattgtaag tactcagata aagaatgacg aggtcattct
     2101 gaaaggagaa atccctgcta gatgtattca agaatacagg aacgatttaa cttatttcac
     2161 aaatgggcag ggagtctgct tgacagagtt aaaaggatac cagccagcta ttggtaaatt
     2221 tatttgccaa ccccgccgcc cgaatagccg tatagataag gttcggcata tgttccacaa
     2281 gttagcttaa cagcttgcaa aagtcatata aaatgagatt tgaaaggatt agagactaat
     2341 tatgatgaaa tgcgaatgga tattgtgtcc tgtttgtggg agcaaaaccc gtaataaaat
     2401 taggaaggac actgttttgg agaattatcc cctttattgt ccaaaatgca gacaagaaag
     2461 attgattaaa gttgacaact tgaagataac tgtcatcaaa gagccagacg cttaagacgc
     2521 agagccgatg aaattgtgga acaattcacg aatcatcggc tctttttgtt tcgtatttga
     2581 aagaacaaac tcaccaaata aaaaaaacga tattcgggtg ggttattttg ttatacccta
     2641 aattaccctc tgaatttgtt tttaaatt
//
LOCUS       DASFRC010000311         2443 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.guided.223, whole genome shotgun sequence.
ACCESSION   DASFRC010000311 DASFRC010000000
VERSION     DASFRC010000311.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2443)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2443)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2443
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.guided.223"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            89..298
                     /locus_tag="U1087_002269"
     CDS             89..298
                     /locus_tag="U1087_002269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000527318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-binding protein"
                     /protein_id="HEM4756669.1"
                     /translation="MGNLGAQKAKRNDTPISAKKDIMGDKTVRVRADLHHIIKIETAK
                     NGGNVKEVMDKALEEYIRKYLPDKL"
     gene            315..470
                     /locus_tag="U1087_002270"
                     /pseudo
     CDS             315..470
                     /locus_tag="U1087_002270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002333002.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin"
     gene            508..1245
                     /gene="erm(B)"
                     /locus_tag="U1087_002271"
     CDS             508..1245
                     /gene="erm(B)"
                     /locus_tag="U1087_002271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011018369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2058)-N(6))-methyltransferase
                     Erm(B)"
                     /protein_id="HEM4756670.1"
                     /translation="MNKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLT
                     TKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRYKIVGNIP
                     YHLSTQIIKKVVFESHASDIYLIVEEGFYKRTLDIHRTLGLLLHTQVSIQQLLKLPAE
                     CFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYFVSKWVNREYRQLFTKNQFHQAMKHA
                     KVNNLSTVTYEQVLSIFNSYLLFNGRK"
     gene            1391..1675
                     /locus_tag="U1087_002272"
     CDS             1391..1675
                     /locus_tag="U1087_002272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002326770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="topoisomerase DNA-binding C4 zinc finger
                     domain-containing protein"
                     /protein_id="HEM4756671.1"
                     /translation="MPTKRSGPLVGKCPKCGNNIVLKKSFYGCSNYPECTFTLAEHFR
                     KKKLTKTNVKELLEGKETLVKGIKTKDRKSYNAVVKIGEKGYIDFISFSK"
     gene            complement(1704..1865)
                     /locus_tag="U1087_002273"
                     /pseudo
     CDS             complement(1704..1865)
                     /locus_tag="U1087_002273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004844629.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase"
     gene            complement(1920..2183)
                     /locus_tag="U1087_002274"
     CDS             complement(1920..2183)
                     /locus_tag="U1087_002274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000253176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stage II sporulation protein R"
                     /protein_id="HEM4756672.1"
                     /translation="MVSDWQGGDISKLFPALSGKEDLSMGEDKKADKKRKRIVPKAPV
                     QMIISREYVGTQTVTEAFVPIISEDIRKKIAEGDTFDNEGLSA"
     gene            complement(2183..2413)
                     /locus_tag="U1087_002275"
     CDS             complement(2183..2413)
                     /locus_tag="U1087_002275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001206986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM4756673.1"
                     /translation="MREIQYEIVKEIAVLSTGDSGYTKEINLISWNGKEPKYDIRSFS
                     PNREKCGKGITLNADEAAALLKALQKELNSED"
BASE COUNT          815 a          457 c          439 g          732 t
ORIGIN      
        1 tcacaagtga ttaatcacaa atcacttgtg atttgtgatt gttgatgata aaataagagt
       61 aagaagaaat agaaagaagt gagtggttgt gggaaattta ggcgcacaaa aagcaaaacg
      121 aaatgataca ccaatcagtg caaaaaaaga tattatgggg gataagacgg ttcgtgttcg
      181 tgctgacttg caccatatta taaaaatcga aacagcaaag aatggcggaa acgtaaaaga
      241 agttatggat aaagccttag aagaatatat tcggaaatat ttacctgaca aactttaaaa
      301 ggagtgaaaa tgaaatggca gttacttatg aaaaaacatt tgaaatagag atcattaacg
      361 aattatcggc aagcgtttat aatcgagtat taaactatgt tttgaatcat gaattaaata
      421 aaaatgactc tcaattattg gaagtcaatt tattaaacca attaaagctt agatgctaaa
      481 aatttgtaat taagaaggag tgattacatg aacaaaaata taaaatattc tcaaaacttt
      541 ttaacgagtg aaaaagtact caaccaaata ataaaacaat tgaatttaaa agaaaccgat
      601 accgtttacg aaattggaac aggtaaaggg catttaacga cgaaactggc taaaataagt
      661 aaacaggtaa cgtctattga attagacagt catctattca acttatcgtc agaaaaatta
      721 aaactgaata ctcgtgtcac tttaattcac caagatattc tacagtttca attccctaac
      781 aaacagaggt ataaaattgt tgggaatatt ccttaccatt taagcacaca aattattaaa
      841 aaagtggttt ttgaaagcca tgcgtctgac atctatctga ttgttgaaga aggattctac
      901 aagcgtacct tggatattca ccgaacacta gggttgctct tgcacactca agtctcgatt
      961 cagcaattgc ttaagctgcc agcggaatgc tttcatccta aaccaaaagt aaacagtgtc
     1021 ttaataaaac ttacccgcca taccacagat gttccagata aatattggaa gctatatacg
     1081 tactttgttt caaaatgggt caatcgagaa tatcgtcaac tgtttactaa aaatcagttt
     1141 catcaagcaa tgaaacacgc caaagtaaac aatttaagta ccgttactta tgagcaagta
     1201 ttgtctattt ttaatagtta tctattattt aacgggagga aataattcta tgagtcgctt
     1261 ttgtaaattt ggaaagttac acgttactaa agggaatgta gataaattat taggtatact
     1321 actgacagct tccaaggagc taaagaggtc cctagcgcct acggggaatt tgtatcgata
     1381 aggggtacaa attcccacta agcgctcggg accccttgta ggaaaatgtc ctaagtgtgg
     1441 caacaatatt gtattaaaaa aatcgtttta tggttgttca aattatcctg aatgtacctt
     1501 cactttagct gaacatttta gaaagaaaaa actcaccaaa acaaatgtaa aagaattact
     1561 agagggaaaa gaaaccctgg taaaaggaat caaaacgaaa gatagaaagt cctacaatgc
     1621 cgttgtaaaa atcggagaaa agggatatat tgattttata tctttctcaa aataaacata
     1681 aaagcccttt aaagagggct tttatacgtt tttgctatgt gccatccctg ctttttcaca
     1741 taatccgtga ggatggattt ctgtgtcgca atgctcgcac tctcgttatc cgtaccatcg
     1801 tctttagata agcggcaata aatgccgact aaatagattt tcttttcttc tttgattcct
     1861 gccatactgt aaaacctccg tatctgtcct atctgttttc atgtcccatt gcgtacattc
     1921 taagcggaca gcccctcatt gtcgaaggtg tcgccctcgg caatcttctt ccgaatatcc
     1981 tcggagataa tcgggacaaa cgcttctgta acggtctgtg tgccgacata ttcacggctg
     2041 attatcatct gcactggtgc ttttggcacg atacgctttc tctttttatc tgctttctta
     2101 tcctcgccca tacttaaatc ttcctttcca gacagggcag ggaagagttt ggaaatgtcc
     2161 ccgccctgcc aatcagatac cattaatcct cgctgtttaa ttctttctgt aatgctttaa
     2221 ggagtgccgc cgcttcatca gcgttcagcg tgattccctt gccgcacttt tcacggttcg
     2281 gggaaaagct gcggatgtca tacttcggct ctttcccatt ccatgaaatg agattgattt
     2341 cctttgtgta gccactgtcg cccgtagaca atactgcgat ttcctttacg atttcatact
     2401 ggatttctct cattctccat acctcaactc tctgtattta ctt
//
LOCUS       DASFRC010000312         2274 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate 79-1672
            SAMN09459731-rid19048563.guided.226, whole genome shotgun sequence.
ACCESSION   DASFRC010000312 DASFRC010000000
VERSION     DASFRC010000312.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09459731
            Sequence Read Archive: SRR7369667
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2274)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2274)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001847144.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001847144.1
            Genome Coverage       :: 31x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 00:01:24
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 48 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 11 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2274
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09459731-rid19048563.guided.226"
                     /isolate="79-1672"
                     /isolation_source="lung"
                     /host="Sus scrofa"
                     /db_xref="taxon:1307"
                     /country="Australia"
                     /collection_date="2013"
     gene            <1..287
                     /locus_tag="U1087_002276"
     CDS             <1..287
                     /locus_tag="U1087_002276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4756674.1"
                     /translation="RAFLREPDLLILDDSLSAVDARTERQIIQNIQKERAGKTNVIVT
                     HRLSAVNHADWVLVLDEGRIVEEGRPADLLAQRGWYYEQYQRQQSQEGGE"
     gene            287..2026
                     /locus_tag="U1087_002277"
     CDS             287..2026
                     /locus_tag="U1087_002277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM4756675.1"
                     /translation="MTILGFLLRQIRRVKWLFIVAVGFYLLASTMVRLAPLLIQQAID
                     GPITDLSKGLPFDEAVFLNQSVQYMGMIILGAIGFYLSMRLLMHCANRIAENLRNQAY
                     DVMQRLPISYFDDKPAGKIATRIVNDTETLRTQFYGTLVNAFNNIVRLLFTYGVLFYM
                     NRSLGWLMLLLIPLYIGIQFAYKKMTDKPMKDFYDARSDVNTQVNETMNGASLIQLFG
                     QEERIMKEFEVTADKMRRADNKIIWAQSLATWNLSGFLQNLVIAAILTVVGYQFLAGQ
                     DGVTAGKLFVYVNYIEGVFIALGALVQQFPNMLRSFETGKRLMALLEEELEDDCDRIL
                     EVEQGQVVFEHVNFSYEENRPVLKDITIRSEKGETVALVGHTGSGKSSIMNLLYRFYD
                     PQEGRVLIDGKNIRDYSRESLRSHMGIVLQDPYLFTGTIASNVSMNEEEADRTRIMQA
                     LEKVGAGPMLSRLEKGIDEPVVEKGAAFSSGERQLIAFARTLYSDPKILILDEATSHI
                     DTETEEIIQHAMEVVKEGRTTFIIAHRLSTIQNADQILVLDQGRIIEHGKHEELVARG
                     GVYAQMHEIQAKV"
     gene            2080..>2274
                     /locus_tag="U1087_002278"
     CDS             2080..>2274
                     /locus_tag="U1087_002278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM4756676.1"
                     /translation="MKALIFDVDDTLYDQIQPFERALERHIEVAREQIEPLYLSFRRY
                     ADEVFEATAIGKMSLKDSHIY"
BASE COUNT          645 a          410 c          549 g          670 t
ORIGIN      
        1 cccgtgcttt cctgcgagag ccagatttgc taattctaga tgattctttg tcggcagtgg
       61 atgctcggac agaacgccag attatccaaa atattcaaaa agaacgtgca ggcaaaacca
      121 atgtcatcgt gacccatcgt ctatctgctg tcaaccatgc agattgggta ctagtcttgg
      181 atgaggggcg tatcgttgag gaagggcgtc cagctgattt gcttgcccaa agaggttggt
      241 actatgaaca ataccaacga caacaaagcc aggaaggagg agagtaatga ctattttagg
      301 ttttttatta agacaaatcc gtcgagtcaa gtggctattt atagtagctg tcggcttcta
      361 tctattggct tcgaccatgg ttcgattggc tcctctactg attcagcagg cgattgatgg
      421 gccgattacg gatttgagca agggtttgcc ttttgatgaa gctgttttct taaaccagtc
      481 agttcaatac atgggaatga ttattctggg agctattggc ttctacctat ctatgcgttt
      541 actcatgcat tgcgccaatc gtattgctga aaatctacgt aatcaagcct atgatgttat
      601 gcaacggttg cctatttctt attttgatga taagcccgct ggaaaaattg caactagaat
      661 tgtcaatgat acagaaactc tgcggacaca attttatggg accttagtta atgcctttaa
      721 caatattgtt cgtttgctct ttacatacgg tgtcctattt tacatgaata ggagtcttgg
      781 ttggctgatg ttactcttga taccactcta tatcggtatt caatttgctt acaagaaaat
      841 gacagacaag ccgatgaagg atttttatga tgcaaggagt gacgtcaata cgcaggtgaa
      901 tgagaccatg aatggtgcaa gtttgattca actttttgga caagaagagc gcatcatgaa
      961 agaatttgaa gtgactgctg acaagatgcg tcgggcagat aataagatta tctgggccca
     1021 gtctcttgcc acgtggaatc tgagtggttt tcttcaaaat ttggtcattg ctgcgatttt
     1081 aacggtagtc ggctatcaat ttcttgcggg acaggatgga gttacagctg ggaaactctt
     1141 tgtttatgtc aactatatcg aaggagtctt cattgctttg ggagcgctgg ttcaacagtt
     1201 cccaaatatg cttcgctcgt ttgaaacagg taagcgtcta atggcccttc tagaagaaga
     1261 gctggaggac gactgtgatc gtattttgga agttgaacaa gggcaagtcg tgtttgaaca
     1321 tgtgaacttt agctatgaag aaaacagacc agttttgaaa gatattacca ttcggtcaga
     1381 aaaaggagaa acagttgctc tggttgggca tactgggtct ggtaagtctt ctattatgaa
     1441 cctcctctat cgtttctatg atccacagga gggacgtgta ctgattgatg ggaaaaatat
     1501 ccgtgattat tctcgtgaaa gcctgcgcag tcacatgggg attgttttgc aagatcccta
     1561 tctctttaca gggacgattg ccagcaatgt ttccatgaat gaagaggaag cagatagaac
     1621 aagaatcatg caggcgttag aaaaagttgg tgcagggcct atgctatctc gcttagagaa
     1681 agggattgat gaaccggttg ttgagaaggg ggcggccttt tcaagtgggg aacgtcagtt
     1741 gattgccttt gcgcggacac tctactctga tcctaaaatt ctgatattgg atgaagcaac
     1801 ttctcatatt gatacggaga cggaagaaat tatccaacat gccatggaag tggtgaaaga
     1861 aggtcggaca acctttatca ttgcccaccg actttctacc attcaaaatg cagaccagat
     1921 tcttgtctta gatcaaggtc gaattattga acatgggaag catgaagaat tggttgcacg
     1981 tggtggagta tatgctcaaa tgcatgagat tcaagcaaag gtgtaataag cagttaaaaa
     2041 ttccaagctt tggctggaat tttttgctat aattgactca tgaaagcctt aatttttgat
     2101 gtagatgata cgctttatga tcagattcaa ccgtttgaac gtgctttgga aagacacatt
     2161 gaagtagcaa gggagcaaat tgaaccactc tacctttcct ttcgcagata tgcggatgaa
     2221 gtatttgaag cgacagcaat tggaaagatg agtttgaaag acagtcatat ttat
//
